Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 62 of 138
Found at i:12683214 original size:26 final size:26
Alignment explanation
Indices: 12683175--12683228 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
12683165 GATCTAATCT
*
12683175 TAGAATGGGAATGAACTCCGTATGCC
1 TAGAATGGGAATGAACTCCATATGCC
* *
12683201 TAGACTGGGGATGAACTCCATATGCC
1 TAGAATGGGAATGAACTCCATATGCC
12683227 TA
1 TA
12683229 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCATATGCC
Found at i:12683940 original size:26 final size:26
Alignment explanation
Indices: 12683902--12683954 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12683892 GGCTCATAAT
** *
12683902 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
12683928 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
12683954 C
1 C
12683955 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:12684334 original size:159 final size:157
Alignment explanation
Indices: 12683927--12684373 Score: 398
Period size: 159 Copynumber: 2.8 Consensus size: 157
12683917 AACTCCGTAT
* *
12683927 GCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
12683992 CTGGCCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCAGTCCCCCCTACATGCTGTCGATCC
66 CT-GCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTACATGCTGCCGATCC
* ** * * *
12684057 TGCTACCGTAACCCTTGGTCTAATCTGA
130 CGCTACCACAACCATCGGTCTAAGCTGA
* * * * * * * *
12684085 TCTTACAC-TCAGAATGAACTCCGTATGCATAAGTCAACCCCCGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
12684149 GCCTGTCGAAGAGGCATAATGTGCAAGTCAAGGATCGACTCGGT-CCCCCTCAGCATGCTGCCGG
65 G-CTGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCT-A-CATGCTGCCGA
* * *
12684213 TCCCGCTGCCACAACCATCGGTCT-GGCTGGG
127 TCCCGCTACCACAACCATCGGTCTAAGCT-GA
* * ** *
12684244 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCACGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*** * * * * *
12684309 -TCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATC
66 CT-G-CCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTACATGCTGCCGATC
12684373 C
129 C
12684374 TACTGCCGCA
Statistics
Matches: 223, Mismatches: 57, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 7 0.03
158 99 0.44
159 110 0.49
160 7 0.03
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTACATGCTGCCGATCCC
GCTACCACAACCATCGGTCTAAGCTGA
Found at i:12684439 original size:26 final size:26
Alignment explanation
Indices: 12684403--12684455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12684393 TCGGTTCGAT
12684403 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12684429 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12684455 C
1 C
12684456 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12685292 original size:158 final size:157
Alignment explanation
Indices: 12684797--12685298 Score: 486
Period size: 158 Copynumber: 3.2 Consensus size: 157
12684787 ACTCCGTATG
* *
12684797 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
** * * * * * *
12684861 CC-AGTTGGAGAGGCAGAATACGCAAGCTGGGGACCGACCCAGTCCCCCCTGTGTGCTATCGATC
65 CCGA-CAGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
* * * * * *
12684925 TTACTACCGCAACCCTCAGTCTGGTCTGAT
129 CTGCTGCCACAACCCTC-GTCCGGTTTGAT
* * * ** *
12684955 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
* * * * * * * * *
12685020 TGACCGAAAAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCTCTCTGCGTGCTGTTGGTCC
66 CGACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC-CCCTGCGTGCTGTCGATCC
* * **
12685085 TGCTGCCACAACCCTCGATCCGGCTGGGG
130 TGCTGCCACAACCCTCG-TCCGGTTTGAT
*** * * * * * *
12685114 CTTAGAAAAGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
* * * **
12685179 CGACAGGAGAGGTAGAATGCGTAAGCCGAGGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
*
12685244 GCTGCCATAACCCTCTGTCCGGTTTGAT
131 GCTGCCACAACCCTC-GTCCGGTTTGAT
12685272 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
12685299 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 72, Indels: 10
0.77 0.21 0.03
Matches are distributed among these distances:
157 1 0.00
158 148 0.55
159 118 0.44
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
CGACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGTCCGGTTTGAT
Found at i:12685301 original size:26 final size:26
Alignment explanation
Indices: 12685272--12685324 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12685262 CCGGTTTGAT
12685272 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12685298 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12685324 C
1 C
12685325 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12686710 original size:26 final size:26
Alignment explanation
Indices: 12686672--12686727 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12686662 CTGGTTCGAT
12686672 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12686698 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12686724 CTTA
1 CTTA
12686728 AGGCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12687717 original size:26 final size:26
Alignment explanation
Indices: 12687688--12687737 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12687678 CCGGTCCGAT
12687688 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
* *
12687714 CTTAGACTGGGGATTAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
12687738 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:12688062 original size:26 final size:26
Alignment explanation
Indices: 12688024--12688076 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12688014 GGTACAAAAT
12688024 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12688050 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
12688076 C
1 C
12688077 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12688711 original size:343 final size:342
Alignment explanation
Indices: 12688215--12689671 Score: 1335
Period size: 343 Copynumber: 4.2 Consensus size: 342
12688205 TATCTTAGAT
* * ** * *
12688215 TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACAAGCGTACGGGCGCTGAGCCGACC-G
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCAG
* * ** *
12688279 AAGAGGCATAATGTGCAACCCT-GGGATCAGCCCGATCCCCCTCTGTGTGCTGTCAGTCCCGCTA
66 -AGAGGCATAATGCGCAA-GCTAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTA
*
12688343 CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
129 CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * * *
12688408 GAAATGGGCGTGTGGGCGCTCAGTCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGG
194 GAAACGAGTGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA
* * * * *
12688473 TCTGCCCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAA
259 TC-CCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAA
* *
12688538 TGAACTCCATATGCTTAAAT
323 TGAACTCCGTATGCTTAAAC
* * * * *
12688558 TGGGGATGAACTCTGTATGGCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAGCCGACCAA
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCAG
* * * * *
12688623 AGAGGCATAATGCGTAAGCTATGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTACC
66 AGAGGCATAATGCGCAAGCTAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTACC
** ** *
12688688 ACAACCCTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCACGA
131 ACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* ** * *
12688753 AACGAGTGTGCGGGCGCTCAGCCGGTC-AGAGAGAAAGAATGCGCAAGCCGGGGACCGGCCCAAT
196 AACGAGTGTGCGGGCGCTCAGCCGATCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT
* * * * * * *
12688817 CCCCCCTGCATGCTGTTGATCTTGCTGCCGCAACCTTCAGT-TCGATTCGATCTTAGACTAGGAA
260 -CCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCT-GGTTCGATCTTAGACTGGGAA
* *
12688881 TGAACTTCGTATTCTTAAAC
323 TGAACTCCGTATGCTTAAAC
* *
12688901 TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCAGCCGA
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT--G--AGCC--
* * *
12688966 AGAGGCCGGCCAGAGAGGCATAATGCGCAAG-TTGAGGATCAGCCCGATCCCCCTCTACATACTG
60 -GA------CCAGAGAGGCATAATGCGCAAGCTAG-GGATCAGCCCGATCCCCCTCTGCATGCTG
* * *
12689030 TCGATCCCGCTGCCAGTCCTACTGCGACAACCCTCAGTCCGGCTGGGGCTTAGAGATGGAATGAA
117 TCG-----G-T-CCCG--CTAC--C-ACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAA
* * * * * * *
12689095 CTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGTGCTCAACCGATCGGAGAGGCAGAA
170 CTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAA
* * * * * *
12689160 TACGCAAGCTGGGGATTGGCCCGATCACCCCTTGCGTGCTGTTGATCCTGCTGTTGCAACCCTCG
235 TGCGCAAGCCGGGGATCGGCCCGATC-CCCC-TGCGTGCTGTCGATCCTGCTGTCGCAACCCTCA
* *
12689225 GTCCGGTTGGATCTTAGACT-GG---G-A------ATG----AAC
298 GTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAAC
* ** *
12689255 ------T---CT--GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGTCGGTCGG
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCAG
* * * * * * *
12689309 AGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTGTGCGTGCTGGT-GGTCCTGCTGC
66 AGAGGCATAATGCGCAAGCTAGGGATCAGCCCGATCCCCCTCTGCATGCT-GTCGGTCCCGCTAC
* * * *
12689373 CATAACCCTCGGTCCAACTGGGGCTTCGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
130 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
12689438 AAACGAGTGTGCGGGCACTCAGCCGGTCTG-AGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGG
195 AAACGAGTGTGCGGGCGCTCAGCCGATC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA
* * *
12689502 TACCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCAGTCCT-GTCCGATCTTTGACTGGGA
259 T-CCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGT-CTGGTTCGATCTTAGACTGGGA
*
12689566 ATGAACTCCGTATGCTTAGAC
322 ATGAACTCCGTATGCTTAAAC
* * * * *
12689587 TGGGGATGAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAACCA
1 TGGGGATG-AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCA
*
12689652 GAGAGGCAGAATGCGCAAGC
65 GAGAGGCATAATGCGCAAGC
12689672 CGAGGATCGA
Statistics
Matches: 895, Mismatches: 152, Indels: 133
0.76 0.13 0.11
Matches are distributed among these distances:
317 43 0.05
318 116 0.13
319 3 0.00
321 4 0.00
322 1 0.00
323 3 0.00
324 1 0.00
325 1 0.00
328 3 0.00
330 43 0.05
331 4 0.00
332 2 0.00
336 1 0.00
338 1 0.00
339 3 0.00
341 1 0.00
342 6 0.01
343 365 0.41
344 61 0.07
345 3 0.00
347 4 0.00
348 1 0.00
350 2 0.00
354 3 0.00
355 1 0.00
356 47 0.05
358 2 0.00
361 1 0.00
362 1 0.00
363 3 0.00
364 1 0.00
365 5 0.01
367 2 0.00
368 114 0.13
369 43 0.05
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (342 bp):
TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCAG
AGAGGCATAATGCGCAAGCTAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTACC
ACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGAGTGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATC
CCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAAAC
Found at i:12689355 original size:159 final size:158
Alignment explanation
Indices: 12689087--12689580 Score: 587
Period size: 159 Copynumber: 3.1 Consensus size: 158
12689077 GCTTAGAGAT
* * * * *
12689087 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGTGCTCAACCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAG
* * *
12689152 AGGCAGAATACGCAAGCTGGGGATTGGCCCGATCACCCCTTGCGTGCTGTTGATCCTGCTGTTGC
66 AGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTC-CCCCTTGCGTGCTGTTGATCCTGCTGTCGC
*
12689217 AACCCTCGGTCCGGTTGGATCTTAGACTG
130 AACCCTCGGTCCAGTTGGATCTTAGACTG
* * * * *
12689246 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAG
* * * * * **
12689311 AGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTGTGCGTGCTGGTGGTCCTGCTGCCAT
66 AGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCT-TGCGTGCTGTTGATCCTGCTGTCGC
** ** *
12689376 AACCCTCGGTCCAACTGGGGCTTCGACAT-
130 AACCCTCGGTCCAGTTGGATCTTAGAC-TG
* * * *
12689405 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGCCGGTCTGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAG
* * * *
12689470 AGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTACCCCC-TGCGTGCTATCGATCCTGCTGTCGC
66 AGGCAGAATGCGCAAGCTGGGGATTGGCCCGGT-CCCCCTTGCGTGCTGTTGATCCTGCTGTCGC
* * ** *
12689534 AACCCTCAGTCCTGTCCGATCTTTGACTG
130 AACCCTCGGTCCAGTTGGATCTTAGACTG
12689563 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
12689581 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 56, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 58 0.21
159 210 0.76
160 6 0.02
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCTTGCGTGCTGTTGATCCTGCTGTCGCA
ACCCTCGGTCCAGTTGGATCTTAGACTG
Found at i:12696191 original size:26 final size:26
Alignment explanation
Indices: 12696153--12696204 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12696143 GGCTCAAAAT
12696153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12696179 CTTAGACAT-GGAATGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12696205 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12696390 original size:26 final size:26
Alignment explanation
Indices: 12696349--12696401 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12696339 CCAGTTCGAT
12696349 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
** *
12696375 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
12696401 C
1 C
12696402 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:12696757 original size:26 final size:26
Alignment explanation
Indices: 12696728--12696779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12696718 CCGGTCCAAT
12696728 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12696754 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12696780 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12697161 original size:159 final size:157
Alignment explanation
Indices: 12696753--12697195 Score: 430
Period size: 159 Copynumber: 2.8 Consensus size: 157
12696743 AACTCCGTAT
* * *
12696753 GCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAAC-GAACGTGCAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGA-GTGC-GGCGCTCA
* * * * * * **
12696817 GCCAGCCAGAGAGGCAGAACGCATAAGCCGGGGACCGGTCTGGTCCCTTCTGTGTGCTGTCGATC
64 GCCGGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCTCTGCATGCTGTCGATC
* *
12696882 CTGCTACCGCAACCCTTGGTCTGATTCGA
129 CTGCTACCACAACCCTTGGTCCGATTCGA
* * * * *
12696911 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTA-TG-GGCGTT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AG-G-AGTGCGGCGCT
* * * ** * * *
12696973 GAGCCGACC-GAAGAGGCATAATGTGTAAGCCGCGGATTGGCCCGATCCCACTCTGCATGCTGTC
62 CAGCCGGCCAG-AGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCC-CTCTGCATGCTGTC
* * * *
12697037 GAT-CTCGCTGCCACAACCCTTGGTCCGGTTGGG
125 GATCCT-GCTACCACAACCCTTGGTCCGATTCGA
* * *
12697070 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGAGTGCGGCTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGAGTGCGGC-GCTCAG
* **
12697135 CCGGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCCCTGGGTGCTGTCG
65 CCGGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCTCTGCATGCTGTCG
12697196 CAACCCTCGA
Statistics
Matches: 223, Mismatches: 49, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 97 0.43
159 114 0.51
160 5 0.02
162 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGAGTGCGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCTCTGCATGCTGTCGATCCT
GCTACCACAACCCTTGGTCCGATTCGA
Found at i:12697258 original size:26 final size:26
Alignment explanation
Indices: 12697218--12697269 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12697208 CGGTCTGATT
* *
12697218 TTAGATTTGGAATGAACTTCGTATGC
1 TTAGATTGGGAATGAACTCCGTATGC
*
12697244 TTAGATTGGGGATGAACTCCGTATGC
1 TTAGATTGGGAATGAACTCCGTATGC
12697270 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (26 bp):
TTAGATTGGGAATGAACTCCGTATGC
Found at i:12698150 original size:26 final size:26
Alignment explanation
Indices: 12698114--12698169 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12698104 CTGACCCGAT
12698114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12698140 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12698166 CTTA
1 CTTA
12698170 AGTCAACCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12698523 original size:26 final size:26
Alignment explanation
Indices: 12698494--12698546 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12698484 CCGATCTAAT
12698494 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
12698520 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12698546 C
1 C
12698547 CTAAGCCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12698762 original size:209 final size:209
Alignment explanation
Indices: 12698402--12698781 Score: 555
Period size: 209 Copynumber: 1.8 Consensus size: 209
12698392 CTGGAGAGAG
* * *
12698402 AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTACTGGTCTTA
1 AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGCCAATCCTACTACTGGTCTTA
* * * *
12698467 CTACCGCAACCCTTGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA
66 CTACCGCAACCCTCGGTCCGATCTAATCTTAGACTGGAAATGAACTCCATAAGCTTAGACATGGA
* *
12698532 ATGAACTTCGTATGCCTAAGCCGACCCACGAAACGAGCGTGTGGGTGCTCAACCGGCTAGAGGGG
131 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAACCGGCTAGAGGGG
12698597 CCGATCGAAAAGGT
196 CCGATCGAAAAGGT
* * * * *
12698611 AGAATGCGCAAGTCGGGGATC-AGCCCGATCCTCTCTGCGTGCTGCCAATCCTACTGCTGGTCTT
1 AGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCATGCTGCCAATCCTACTACTGGTCTT
* * * * * *
12698675 GCTATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGAAATGAACTCCATAAGCTTAGACATGG
65 ACTACCGCAACCCTCGGTCCGATCTAATCTTAGACTGGAAATGAACTCCATAAGCTTAGACATGG
*
12698740 AATGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTG
130 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
12698782 CGGGCACTCA
Statistics
Matches: 149, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
208 1 0.01
209 148 0.99
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (209 bp):
AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGCCAATCCTACTACTGGTCTTA
CTACCGCAACCCTCGGTCCGATCTAATCTTAGACTGGAAATGAACTCCATAAGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAACCGGCTAGAGGGG
CCGATCGAAAAGGT
Found at i:12699133 original size:552 final size:548
Alignment explanation
Indices: 12698296--12699892 Score: 1690
Period size: 552 Copynumber: 2.9 Consensus size: 548
12698286 TGTCGGTCTT
* * * *
12698296 GCTACCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAA
1 GCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAAC-TCACTATGCCTAAGCCAA
** * * ** ** * * * * *
12698360 CCCATGAAAC-GAGCGTGCGGGGGCTCAGCTAGCTGGAGAGAG-AGAATGCGCAAGCCGGGGATC
65 CCCACAAAACAG-GCATACGGGCACTCAGCCGGCCGAAAAG-GCAGAATGCGTAAGCCAGGGATC
* * * * * *
12698423 GACCCGATCCCCCCTGCATGCTGTCGATCCTGCTACTGGTCTTACTACCGCAACCCTTGGTCCGA
128 GACCCGGTCTCCCCTACATGCTATCGATCCTG---CT-G--------CCGCAACCCTCGCTCCGA
* *
12698488 -TCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT-TCGTATGCCTAA
181 TTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCT-GTATGCCTAA
* * * * * * * *
12698551 GCCGACCCACGAAACGAGCGTGTGGGTGCTCAACCGGCTAGAGGGGCCGATCGAAAAGGTAGAAT
243 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAACC-GCTGGAGAGGCCGATCGGAGAGGCAGAAT
** * * * ** *
12698616 GCGCAAGTCGGGGATCAGCCCGATCCTCTCTGCGTGCTGCCAATCCTACTGCTGGTCTTGCTATC
307 GCAAAAGTCGGGGATC-GCCTGATCCCCCCTGCGTGCTGCTGATCCTGCTGCTGGTCTTGCTATC
* * * * * *
12698681 GTAACCCTCGGTCTGGTCTGATCTTAGACTGGAAATGAACTCCATAAGCTTAGACATGGAATGAA
371 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAA
* * *
12698746 CTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCACTCAACTGACTGGAGAGGCAGAA
436 CTCCGTATGCCTAAGCCAAC-CACGAAACGAGCGTGCGGGCACTCAACCGACCGGAAAGGCAGAA
* * * * *
12698811 TGCGCAAGTCAG-GGATCGGCCCGATCCCCCTCTACTTTTTGTCAGTCCC
500 TGCACAAG-CAGAGGATCGACCCGATCCCACTCTACGTTCTGTCAGTCCC
* * * *
12698860 GCTGCCACAACCCTC-GATCTAGCTGGGGCTTAGACATGGAATGAACTCACTGTGCCTAAGCCAA
1 GCTACCACAACCCTCAG-TCCAGCTAGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAA
* ** * *
12698924 CCCACGAAACAGGCATACGGGTGCTCAGCCGGCCGAAAAGGCATAATGCGTAAG-CTGCGGATCG
65 CCCACAAAACAGGCATACGGGCACTCAGCCGGCCGAAAAGGCAGAATGCGTAAGCCAG-GGATCG
* * * * *
12698988 ACCCGGTC-CCCCTTGCGTGCTA-CTGATCCTGCTGTCGCAACCCTCGGTCC-AGTTTGATCTTA
129 ACCCGGTCTCCCC-TACATGCTATC-GATCCTGCTGCCGCAACCCTCGCTCCGA-TTCGATCTTA
* * *
12699050 GATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGA
191 GACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCACGA
* ** * *
12699115 AACGAGCATGCGGGTGCTCTTCCAGCCGGACAGGCCGATCGGAGAGGCAGAATGCAAAAGTCAGG
255 AACGAGCGTGCGGGTGCTCAACC-GCTGGAGAGGCCGATCGGAGAGGCAGAATGCAAAAGTC-GG
* * *
12699180 GGTTGGCCTGATCCCCCCTGCGTGCTGCTGATCCTGCTACTGGTCTTGCTATCGCAACCCTCGGT
318 GGATCGCCTGATCCCCCCTGCGTGCTGCTGATCCTGCTGCTGGTCTTGCTATCGCAACCCTCGGT
* * *
12699245 CCGGTCCGATCTTAGACTGGGAATCAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCT
383 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
* * * * * * *
12699310 AAGCCTACCCATGAAATGAGCGTACGGGCGCTCAGCCGACCGGAAAGGCAGAATGCACAAGCTGA
448 AAGCC-AACCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAAAGGCAGAATGCACAAGCAGA
* *
12699375 GGATCGACCCGATCCCACTCTGCGTTCTGTCGGTCCC
512 GGATCGACCCGATCCCACTCTACGTTCTGTCAGTCCC
* * *
12699412 GCTACCATAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAAC
* * * * * *
12699477 CCACAAAACGGGCGTACGGGCACTTAGCCGGCCGAAGAGGTAGAGTGCGTAAGCCAGGGATCGAC
66 CCACAAAACAGGCATACGGGCACTCAGCCGGCCGAAAAGGCAGAATGCGTAAGCCAGGGATCGAC
* *
12699542 CCGGTCTCCCCTACATGCTATCGATCCTGCTGCCGTAACCCTCTCTCCGATTCGATCTTAGACTG
131 CCGGTCTCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGCTCCGATTCGATCTTAGACTG
* * **
12699607 GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCCAAGTCAACCCACGAAAAAA
196 GGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
* * * * * **
12699672 GGGTGCAGGTGCTCAGCCGATCGGAGAGGCCG-GCTGGAGAGGCAGAATGCAAAAGTTAGGGATC
260 GCGTGCGGGTGCTCAACCGCT-GGAGAGGCCGATC-GGAGAGGCAGAATGCAAAAGTCGGGGATC
* * * *
12699736 GACCTGGTCCCCCCTGCGTGCTACTGATCCTGCTGCTGGTCCTGCTATTGCAA-CCTCGGTCCGG
323 G-CCTGATCCCCCCTGCGTGCTGCTGATCCTGCTGCTGGTCTTGCTATCGCAACCCTCGGTCCGG
* *
12699800 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGG
387 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
*
12699865 CAACCGACAAAACGAGCGTGCGGGCACT
452 CAACC-ACGAAACGAGCGTGCGGGCACT
12699893 TAGCTTGGTC
Statistics
Matches: 868, Mismatches: 142, Indels: 59
0.81 0.13 0.06
Matches are distributed among these distances:
550 3 0.00
551 100 0.12
552 613 0.71
553 18 0.02
560 1 0.00
561 2 0.00
563 11 0.01
564 119 0.14
565 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (548 bp):
GCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAAC
CCACAAAACAGGCATACGGGCACTCAGCCGGCCGAAAAGGCAGAATGCGTAAGCCAGGGATCGAC
CCGGTCTCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGCTCCGATTCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGTGCTCAACCGCTGGAGAGGCCGATCGGAGAGGCAGAATGCAAAAGTCGGGGATCGCC
TGATCCCCCCTGCGTGCTGCTGATCCTGCTGCTGGTCTTGCTATCGCAACCCTCGGTCCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CACGAAACGAGCGTGCGGGCACTCAACCGACCGGAAAGGCAGAATGCACAAGCAGAGGATCGACC
CGATCCCACTCTACGTTCTGTCAGTCCC
Found at i:12699293 original size:26 final size:26
Alignment explanation
Indices: 12699255--12699307 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
12699245 CCGGTCCGAT
12699255 CTTAGACTGGGAATCAACT-TCGTATG
1 CTTAGACTGGGAATCAACTCT-GTATG
*
12699281 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATCAACTCTGTATG
12699307 C
1 C
12699308 CTAAGCCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTGTATG
Found at i:12699628 original size:26 final size:26
Alignment explanation
Indices: 12699598--12699650 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12699588 CCGATTCGAT
12699598 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
12699624 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
12699650 C
1 C
12699651 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:12699844 original size:26 final size:26
Alignment explanation
Indices: 12699806--12699858 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12699796 CCGGTCCGAT
*
12699806 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12699832 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12699858 C
1 C
12699859 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12700321 original size:26 final size:26
Alignment explanation
Indices: 12700270--12700322 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12700260 TCGGTCCGAT
*
12700270 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12700296 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12700322 C
1 C
12700323 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12701875 original size:26 final size:26
Alignment explanation
Indices: 12701824--12701876 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12701814 GGCTCAAACT
*
12701824 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12701850 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12701876 C
1 C
12701877 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12702678 original size:159 final size:154
Alignment explanation
Indices: 12702267--12702697 Score: 402
Period size: 154 Copynumber: 2.8 Consensus size: 154
12702257 CTCTGTATGT
* * **
12702267 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAATC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
* * * ** *
12702332 -AGCTGGAGAGGCAGAATGAACAAGTCGGGGATCAACCCGATTCCCCCCTGCGTGCTGTCGATCC
66 GATC-GGAGAGGCAGAATGCACAAGACGGGGATCGGCCCGAGTCCCCCCTGCGTGCTGTCGATCC
** * **
12702396 TGCTACCACAATCCTCGATCCATTT
130 CCCTACCACAACCCTCGATCCATGC
** * ** * * * * *
12702421 TTAGACCGGGAATGAGCTCCGTATGCCTAAGATAAACTACGAAACGAGCGTTCGGGCGTTGAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
* * * ** * *
12702486 GGTTGGAGAGGCATAATGCACAAGATAGTGATCGGCCCG-GTCCCCCTCTGTGTGCTGTCGATCC
66 GATCGGAGAGGCAGAATGCACAAGACGGGGATCGGCCCGAGTCCCCC-CTGCGTGCTGTCGATCC
*
12702550 CCCTACCACAACCCTCGGTCCGACTGGGGC
130 CCCTACCACAACCCTCGATCC-A-T---GC
* * * *
12702580 TTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAAC-AGGCGTACGGCCGCTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCGCTCAGC
* * *
12702644 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC-AATCCCCCCTGCGTG
65 CGATCGGAGAGGCAGAATGCACAAGACGGGGATCGGCCCGAGTCCCCCCTGCGTG
12702698 TTACTGATCC
Statistics
Matches: 212, Mismatches: 56, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
153 6 0.03
154 112 0.53
155 1 0.00
156 1 0.00
158 7 0.03
159 85 0.40
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (154 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
GATCGGAGAGGCAGAATGCACAAGACGGGGATCGGCCCGAGTCCCCCCTGCGTGCTGTCGATCCC
CCTACCACAACCCTCGATCCATGC
Found at i:12702766 original size:26 final size:26
Alignment explanation
Indices: 12702737--12702789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12702727 CCGGTGCAAT
*
12702737 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12702763 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12702789 C
1 C
12702790 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12702995 original size:26 final size:25
Alignment explanation
Indices: 12702945--12702996 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12702935 CTGGTTTGAT
*
12702945 CTTAGACTGGAATGAACTCTATATG
1 CTTAGACTGGAATGAACTCCATATG
*
12702970 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
12702996 C
1 C
12702997 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:12703469 original size:25 final size:26
Alignment explanation
Indices: 12703441--12703492 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12703431 CTGATTCGAT
*
12703441 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12703466 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12703492 C
1 C
12703493 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12703698 original size:26 final size:25
Alignment explanation
Indices: 12703648--12703699 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12703638 CTGGTTTGAT
*
12703648 CTTAGACTGGAATGAACTCTATATG
1 CTTAGACTGGAATGAACTCCATATG
*
12703673 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
12703699 C
1 C
12703700 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:12703701 original size:703 final size:704
Alignment explanation
Indices: 12702002--12704218 Score: 3171
Period size: 703 Copynumber: 3.2 Consensus size: 704
12701992 CCTCGGTCCA
* * * *
12702002 TGCTATCGATCCTACTACCACAACCCTCGATCCGGTTCGATCTTAGATTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTACTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTA
* * **
12702067 TGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
66 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCA
* * * * * * * * * * *
12702132 ACCGGTAGGAGAAGCCAGTCGGAGGGGCAGAATGCGCAAGCCGAGGATCGGCCCGGGCCTCCGTA
131 ACCGATCGGGGAGGCCGGTCGAAGAGGCAAAATACGCAAGCCGTGGATCGGCCCGGGCC-CCCTA
* * *
12702197 CATGCT-TTCGAT-C--TTGTT-G------T--CGCAACCCTCGGTCCGGTTTGATCTTAGATTG
195 CATGCTGTT-GATCCTGTTGTTGGTCCTACTGCCGCAACCCTCAGTCTGGTTTGATCTTAGACT-
* * * * *
12702249 GGAATGAACTCTGTATGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
258 GGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGA
* * * * * * * * ** *
12702314 GCGTGCGGGTGCTCAATC-AGCTGGAGAGGCAGAATGAACAAGTCGGGGATCAACCCGATTCCC-
323 GCGTGAGGGCGCTCAGTCGATC-GGAGAGGTAGAATGCATAAGCCGGGGATCGGCCCG-GTCCCT
** * * ** * * * * * * * *
12702377 CCCTGCGTGCTGTCGATCCTGCTACCACAATCCTCGATC-CATTTTTAGACCGGGAATGAGCTCC
386 CATTGCGTGCTATCAATCCTATTGCCACAATCTTCGGTCTGA-TCTTAAACTGGGAATGAGTTCC
* * * * * * * *
12702441 GTATGCCTAAGATAAACTACGAAACGAGCGTTCGGGCGTTGAGCCGGTTGGAGAGGCATAATGCA
450 GTATGCCTAAGACAACCCACGAAATGAGCGTTCGGGCGTTGAGCCAGCTAGAGAGGCATAATGCG
* * * * ** * * * * * * *
12702506 CAAGATAG-TGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGATCCCCCTACCACAACCCTCGGTC
515 TAAG-TCGATGATCGGCTCGATCCCCCTCTGCATGCTATCGGTCTCGCTGCGACAACCCTCGATC
* * * * * * * **
12702570 CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACAGGCGTACGG
579 TGGCTAGGGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGG
** * * * * * ** ** *
12702635 CCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTGCG
644 GTGCTTAGCTGATCGGAGAGGTAGAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCCTGGG
* * * * *
12702696 TG-T-TACTGATCCTACTGCCGCAACCCTCGATCCGGTGCAATCTTAGATTGGGAATGAACTCCG
1 TGCTGT-C-GATCCTACTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCG
*
12702759 TATGCTTAGACTGGGGATGAACTCCGTATGCCTCAGTCAACCCATGAAACGAGCATGCGGGCACT
64 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACT
12702824 CAACCGATCGGGGAGGCCGGTCGAAGAGGCAAAATACGCAAGCCGTGGATCGGCCCGGGCCCCCT
129 CAACCGATCGGGGAGGCCGGTCGAAGAGGCAAAATACGCAAGCCGTGGATCGGCCCGGGCCCCCT
12702889 ACATGCTGTTGATCCTGTTGTTGGTCCTACTGCCGCAACCCTCAGTCTGGTTTGATCTTAGACTG
194 ACATGCTGTTGATCCTGTTGTTGGTCCTACTGCCGCAACCCTCAGTCTGGTTTGATCTTAGACTG
12702954 GAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAG
259 GAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAG
12703019 CGTGAGGGCGCTCAGTCGATCGGAGAGGTAGAATGCATAAGCCGGGGATCGGCCCGGTCCCTCAT
324 CGTGAGGGCGCTCAGTCGATCGGAGAGGTAGAATGCATAAGCCGGGGATCGGCCCGGTCCCTCAT
12703084 TGCGTGCTATCAATCCTATTGCCACAATCTTCGGTCTGATCTTAAACTGGGAATGAGTTCCGTAT
389 TGCGTGCTATCAATCCTATTGCCACAATCTTCGGTCTGATCTTAAACTGGGAATGAGTTCCGTAT
12703149 GCCTAAGACAACCCACGAAATGAGCGTTCGGGCGTTGAGCCAGCTAGAGAGGCATAATGCGTAAG
454 GCCTAAGACAACCCACGAAATGAGCGTTCGGGCGTTGAGCCAGCTAGAGAGGCATAATGCGTAAG
12703214 TCGATGATCGGCTCGATCCCCCTCTGCATGCTATCGGTCTCGCTGCGACAACCCTCGATCTGGCT
519 TCGATGATCGGCTCGATCCCCCTCTGCATGCTATCGGTCTCGCTGCGACAACCCTCGATCTGGCT
12703279 AGGGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGCT
584 AGGGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGCT
*
12703344 TAGCTGATCGGAGAGGTAGAATGCGTAAGTCGAGGATTAGCCCGGTCCCCCCTGGG
649 TAGCTGATCGGAGAGGTAGAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCCTGGG
* * * *
12703400 TGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGATTCGATCTTAGACT-GGAATGAACTTCGTA
1 TGCTGTCGATCCTACTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTA
*
12703464 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCACTCA
66 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCA
12703529 ACCGATCGGGGAGGCCGGTCGAAGAGGCAAAATACGCAAGCCGTGGATCGGCCCGGGCCCCCTAC
131 ACCGATCGGGGAGGCCGGTCGAAGAGGCAAAATACGCAAGCCGTGGATCGGCCCGGGCCCCCTAC
12703594 ATGCTGTTGATCCTGTTGTTGGTCCTACTGCCGCAACCCTCAGTCTGGTTTGATCTTAGACTGGA
196 ATGCTGTTGATCCTGTTGTTGGTCCTACTGCCGCAACCCTCAGTCTGGTTTGATCTTAGACTGGA
12703659 ATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCG
261 ATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCG
12703724 TGAGGGCGCTCAGTCGATCGGAGAGGTAGAATGCATAAGCCGGGGATCGGCCCGGTCCCTCATTG
326 TGAGGGCGCTCAGTCGATCGGAGAGGTAGAATGCATAAGCCGGGGATCGGCCCGGTCCCTCATTG
12703789 CGTGCTATCAATCCTATTGCCACAATCTTCGGTCTGATCTTAAACTGGGAATGAGTTCCGTATGC
391 CGTGCTATCAATCCTATTGCCACAATCTTCGGTCTGATCTTAAACTGGGAATGAGTTCCGTATGC
12703854 CTAAGACAACCCACGAAATGAGCGTTCGGGCGTTGAGCCAGCTAGAGAGGCATAATGCGTAAGTC
456 CTAAGACAACCCACGAAATGAGCGTTCGGGCGTTGAGCCAGCTAGAGAGGCATAATGCGTAAGTC
12703919 GATGATCGGCTCGATCCCCCTCTGCATGCTATCGGTCTCGCTGCGACAACCCTCGATCTGGCTAG
521 GATGATCGGCTCGATCCCCCTCTGCATGCTATCGGTCTCGCTGCGACAACCCTCGATCTGGCTAG
**
12703984 GGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGATGTGTGGGTGCTTA
586 GGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGCTTA
*
12704049 GCTGATCAGAGAGGTAGAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCCTGGG
651 GCTGATCGGAGAGGTAGAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCCTGGG
* * *
12704103 TGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATTCGATCTTAGACT-GGAATGAACTTCGTA
1 TGCTGTCGATCCTACTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTA
* * *
12704167 TGCTTAGATTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGC
66 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
12704219 GTGCAGCCGC
Statistics
Matches: 1389, Mismatches: 113, Indels: 33
0.90 0.07 0.02
Matches are distributed among these distances:
692 1 0.00
693 15 0.01
694 168 0.12
696 5 0.00
697 1 0.00
703 766 0.55
704 399 0.29
705 33 0.02
706 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (704 bp):
TGCTGTCGATCCTACTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCA
ACCGATCGGGGAGGCCGGTCGAAGAGGCAAAATACGCAAGCCGTGGATCGGCCCGGGCCCCCTAC
ATGCTGTTGATCCTGTTGTTGGTCCTACTGCCGCAACCCTCAGTCTGGTTTGATCTTAGACTGGA
ATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCG
TGAGGGCGCTCAGTCGATCGGAGAGGTAGAATGCATAAGCCGGGGATCGGCCCGGTCCCTCATTG
CGTGCTATCAATCCTATTGCCACAATCTTCGGTCTGATCTTAAACTGGGAATGAGTTCCGTATGC
CTAAGACAACCCACGAAATGAGCGTTCGGGCGTTGAGCCAGCTAGAGAGGCATAATGCGTAAGTC
GATGATCGGCTCGATCCCCCTCTGCATGCTATCGGTCTCGCTGCGACAACCCTCGATCTGGCTAG
GGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGCTTA
GCTGATCGGAGAGGTAGAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCCTGGG
Found at i:12704560 original size:25 final size:26
Alignment explanation
Indices: 12704511--12704562 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
12704501 CTGGTCCGAT
12704511 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
*
12704537 CTTAGACTGG-GATGAAC-TCTGTATG
1 CTTAGACTGGAAATGAACTTC-GTATG
12704562 C
1 C
12704563 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 2 0.08
25 12 0.50
26 10 0.42
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:12705509 original size:26 final size:25
Alignment explanation
Indices: 12705480--12705529 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
12705470 CCGATCCGAT
*
12705480 CTTAGCCTGGAAATGAACTCCGTATG
1 CTTAGACTGG-AATGAACTCCGTATG
*
12705506 CTTAGACTGGGATGAACTCCGTAT
1 CTTAGACTGGAATGAACTCCGTAT
12705530 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:12706238 original size:26 final size:25
Alignment explanation
Indices: 12706200--12706278 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 25
12706190 GGCTCAAAAT
12706200 CTTAGAC-TGGGAATGAACTCGATATG
1 CTTAGACAT-GGAATGAACTCG-TATG
*
12706226 CTTAGACATGGAATGAACTATGTATG
1 CTTAGACATGGAATGAACT-CGTATG
12706252 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACT-CGTATG
12706278 C
1 C
12706279 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
26 46 0.96
27 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCGTATG
Found at i:12707768 original size:26 final size:26
Alignment explanation
Indices: 12707732--12707784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12707722 CCATTCCAAT
*
12707732 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12707758 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12707784 C
1 C
12707785 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12708495 original size:26 final size:27
Alignment explanation
Indices: 12708457--12708555 Score: 136
Period size: 26 Copynumber: 3.8 Consensus size: 27
12708447 GGCTCAAAAT
**
12708457 CTTAGAC-TGGGAATGCAA-TTTGTATG
1 CTTAGACAT-GGAATGCAACTCCGTATG
12708483 CTTAGACATGGAAT-CAACTCCGTATG
1 CTTAGACATGGAATGCAACTCCGTATG
12708509 CTTAGACATGGAATG-AACTCCGTATG
1 CTTAGACATGGAATGCAACTCCGTATG
12708535 CTTAGACATGGAATG-AACTCC
1 CTTAGACATGGAATGCAACTCC
12708556 ATCTGCCTAA
Statistics
Matches: 68, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
25 3 0.04
26 64 0.94
27 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (27 bp):
CTTAGACATGGAATGCAACTCCGTATG
Found at i:12708848 original size:184 final size:184
Alignment explanation
Indices: 12708509--12708964 Score: 605
Period size: 184 Copynumber: 2.5 Consensus size: 184
12708499 ACTCCGTATG
* * * * *
12708509 CTTAGAC-ATGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATCTGCCTAAGCCAAC
1 CTTAGACTA-GGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
12708572 CCACGAAACGTGCGTGCGGCCACTCAGTCGATCGGAGAGGCAGAATACGCAAGCCGAGGATCGAC
64 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACACAAGCCGAGGATCGAC
* * * *
12708637 CTGGTTCCCCATGTGTGCTATCGATCCTACTATCACAACCCTCAGTCTGGTCCGAT
129 CTGGTTCCCCATGCGTGCTACCGATCCTACTACCACAACCCTCAATCTGGTCCGAT
*
12708693 CTTAGACTAGGAATGAACTCCATATGCTTGGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * *
12708758 ATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTCC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACACAAGCCGAGGATC-GACC
* * * *
12708823 -GG-TCCTCCCTGCGTGCTACCGATCCTGCTACCACAACCCTTAATCTGGTCTGAT
130 TGGTTCC-CCATGCGTGCTACCGATCCTACTACCACAACCCTCAATCTGGTCCGAT
* *
12708877 CTTAGACTGGGAATGAACTCCATATGCATAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
*
12708942 ACGAAACGAGCGTACGGGCGCTC
66 ACGAAACGAGCGTGCGGGCGCTC
12708965 GGTCGACCAA
Statistics
Matches: 239, Mismatches: 29, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
183 4 0.02
184 231 0.97
185 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (184 bp):
CTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACACAAGCCGAGGATCGACCT
GGTTCCCCATGCGTGCTACCGATCCTACTACCACAACCCTCAATCTGGTCCGAT
Found at i:12708918 original size:26 final size:26
Alignment explanation
Indices: 12708879--12708929 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12708869 GGTCTGATCT
12708879 TAGACTGGGAATGAACTCCATATGCA
1 TAGACTGGGAATGAACTCCATATGCA
* *
12708905 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
12708930 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:12710014 original size:159 final size:157
Alignment explanation
Indices: 12709644--12710131 Score: 367
Period size: 159 Copynumber: 3.1 Consensus size: 157
12709634 AGATATGGAT
* * * * * * ** * *
12709644 TGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTGTGGTCGTTCAGCCG-GCGGGACAGG
1 TGAACTCCCTATGCATAAGCCAACCCATGAAACGAGCGTGCGGCCACTCAGCCGATC-GGAAAGG
* ** * * * * * * * *
12709708 CAGCATGTGCAAGTTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCATAACC
65 CAGAATACGTAAGTCGGGGAACGGCCCGG-CCCCCCTGCATGCTATCGATCCTGCTGCCACAACC
* * ** ****
12709773 CTTGATACGGTTCAATCTTAGACTGGGAA
129 CTCGATCCGACTGGGGCTTAGACTGGGAA
* * * * *
12709802 TGAACTCCGTATGCATGAGTCAACCCATGAAACGAGCGTGCGGCCATTGAGCCGATC-GAAGAGG
1 TGAACTCCCTATGCATAAGCCAACCCATGAAACGAGCGTGCGGCCACTCAGCCGATCGGAA-AGG
* * * * *
12709866 CATAATGCGT-AGGCTGGGGATCGGCCCGATCCCCCTCTGCATGCTATCGATCCTGCTGCCACAA
65 CAGAATACGTAAGTC-GGGGAACGGCCCG-GCCCCC-CTGCATGCTATCGATCCTGCTGCCACAA
*
12709930 CCCTCGGTCCGACTGGGGCTTAGACAT-GGAA
127 CCCTCGATCCGACTGGGGCTTAGAC-TGGGAA
* * * *
12709961 TGAACTCCCTATGGC-TAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCCGGTCGGAAAGG
1 TGAACTCCCTAT-GCATAAGCCAACCCATGAAACGAGCGTGCGGCCACTCAGCCGATCGGAAAGG
* * * * * *
12710025 TAGAATACGTAAGTCGGGGAACGGCCCGGCCCCCCTGCGTGCTGTTGATCCTGCTGTCGCAACCC
65 CAGAATACGTAAGTCGGGGAACGGCCCGGCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCC
* **
12710090 TCGATCCGGTCT-GATCTTAGACTGGGAA
130 TCGATCC-GACTGGGGCTTAGACTGGGAA
*
12710118 TGAACTCCATATGC
1 TGAACTCCCTATGC
12710132 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 57, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 59 0.23
158 80 0.31
159 111 0.42
160 9 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
TGAACTCCCTATGCATAAGCCAACCCATGAAACGAGCGTGCGGCCACTCAGCCGATCGGAAAGGC
AGAATACGTAAGTCGGGGAACGGCCCGGCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCT
CGATCCGACTGGGGCTTAGACTGGGAA
Found at i:12710141 original size:26 final size:26
Alignment explanation
Indices: 12710105--12710157 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12710095 CCGGTCTGAT
12710105 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12710131 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12710157 C
1 C
12710158 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12710827 original size:158 final size:157
Alignment explanation
Indices: 12710498--12710843 Score: 387
Period size: 158 Copynumber: 2.2 Consensus size: 157
12710488 AACTCCATAT
*
12710498 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCACTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCACTCAAC
* * * **
12710563 AGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCTATCCCCCCTGCATGCTGTCGATCCT
66 AGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCGATCCT
* * * * * *
12710628 ATTGCCACATCCCTTGTTCCGACTGGG
131 ACTGCCACAACCCTCGATCCGACTCGA
* * *
12710655 GCTTAGACATGGAATGAACTACC-TATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCACTCA
* * **
12710719 TACA-ATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCCCCTCTGTGTGCTACCGA
64 -ACAGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCCTGCATGCTACCGA
* * * *
12710782 TCTTACTGTCACAACCCTCGATCTG-GTCCGA
127 TCCTACTGCCACAACCCTCGATCCGACT-CGA
*
12710813 TCTTAGAC-TGGGAATGAACTCCGTATGCCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTA
12710844 GACTGAGGAT
Statistics
Matches: 158, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
157 55 0.35
158 101 0.64
159 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCACTCAAC
AGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCGATCCT
ACTGCCACAACCCTCGATCCGACTCGA
Found at i:12710845 original size:26 final size:26
Alignment explanation
Indices: 12710816--12710869 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
12710806 GGTCCGATCT
12710816 TAGACTG-GGAATGAACTCCGTATGCC
1 TAGACTGAGG-ATGAACTCCGTATGCC
12710842 TAGACTGAGGATGAACTCCGTATGCC
1 TAGACTGAGGATGAACTCCGTATGCC
12710868 TA
1 TA
12710870 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGAGGATGAACTCCGTATGCC
Found at i:12712442 original size:26 final size:26
Alignment explanation
Indices: 12712404--12712456 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12712394 CCAGTCTGAT
12712404 CTTAGACTAGGAATGAACCCCATATG
1 CTTAGACTAGGAATGAACCCCATATG
* *
12712430 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACCCCATATG
12712456 C
1 C
12712457 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCATATG
Found at i:12712773 original size:159 final size:158
Alignment explanation
Indices: 12712429--12712786 Score: 414
Period size: 158 Copynumber: 2.3 Consensus size: 158
12712419 AACCCCATAT
* * *
12712429 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAACGAGGGTGCAGGCGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTGAA
* * * * *
12712494 CCGATCGGAGAGGCAAAATGCACTAGCCGGGGATCGAACCGGTCCCCCTTACGTGCTGTCGATCC
66 CCGATCGAAGAGGCAAAATGCACAAGACGGGGATCGAACCGATCCCCCTTACATGCTGTCGATCC
* * *
12712559 TGCTGCCGCAACCCTCGGTCTGGCCTGA
131 CGCTGCCACAACCCTCGGTCCGGCCTGA
* * * * * * * *
12712587 TCTTAGAC-TGGGAATAAACTCTGTATGCATAAGTCAACGCATGAAATGAGCGTGCAGGCTCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTGA
* * * * ** *
12712651 GCCGGTTGAAGAGGCATAATGTGCAAGACGGGGATCGACCCGATCCCCCTTTACATGCTGTCGAT
65 ACCGATCGAAGAGGCAAAATGCACAAGACGGGGATCGAACCGATCCCCC-TTACATGCTGTCGAT
* *
12712716 CCCGCTGCCACAACCCTTGGTCCGG-CTAGG
129 CCCGCTGCCACAACCCTCGGTCCGGCCT-GA
*
12712746 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
12712787 CGAAGCTCAG
Statistics
Matches: 161, Mismatches: 35, Indels: 7
0.79 0.17 0.03
Matches are distributed among these distances:
157 1 0.01
158 91 0.57
159 68 0.42
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTGAA
CCGATCGAAGAGGCAAAATGCACAAGACGGGGATCGAACCGATCCCCCTTACATGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCGGCCTGA
Found at i:12713309 original size:26 final size:26
Alignment explanation
Indices: 12713271--12713323 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12713261 TCGGTCTAAT
* *
12713271 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12713297 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12713323 C
1 C
12713324 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12713802 original size:26 final size:26
Alignment explanation
Indices: 12713773--12713824 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12713763 CCGGTCTGAT
12713773 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
12713799 CTTAGACTGGGGATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
12713825 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:12714144 original size:869 final size:864
Alignment explanation
Indices: 12711533--12716106 Score: 4589
Period size: 869 Copynumber: 5.2 Consensus size: 864
12711523 GTGGCTCAAA
*
12711533 ATCTTAGACTGGGAATGAACTCCGTATGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * *
12711598 CTACGAAACAAGCATGTGGAG-GCACAGCCGG-CTGGAGAGGCAAAATGCATAAGCTGGGGATCA
66 CCACGAAACGAGCGTGCGG-GCGCTCAGCCGGTC-GGAGAGGCAGAATGCATAAGCCGAGGATCG
* * * ** * *
12711661 GCCCGGTCCCCCCTGCGT-CTTGTCGATCCTGCTACTGGAACCCTCACTCTGGTCAGATCTTAGG
129 GCCCGGTCCCCCCTACGTGC-TGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGT
* * * * **
12711725 CTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGTAGGCCG
193 CTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCG
* ** * * *
12711790 AAGAGGCAGAATGCGTAAGCT-GAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCTCGCTA
258 AAGAGGCATAATGCACAAGTTAG-GGATCGGCCCGAT-CCCCTCTGCGTGCTGCCGGTCCCGCTG
* * * *
12711854 CCACAACCCTCGGTTCGGCTGGGACTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCTC
321 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
12711919 AAAATGGGCGTGTGGGCGCTCAACCGACCGGAGAGGCAGAATCCGCAAGCC-GAGGATCGGCCCG
386 GAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCAG-GGATCGGCCCG
* * * * * * * *
12711983 ATCCCTCTTGCGTGCTATCGATCCTACTACGGCAGCCCTCGATTCAGATC-GATCTTAGACTGGG
450 GTCCCCCCTGCGTGCTATCGATCCTACTGCTGCAACCCTCG-GTCCGATCTGATCTTAGACTGGG
* * * *
12712047 AATGAACTCCGTATGCTTAGATTTGGGATGAACTTTGTATGCCTATGTTAACCCATGAAACGAGC
514 AATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * * * * * * * *
12712112 GTGCGGACGCTCAGCCGGCTGGAGAGGCGGTCATACGCAAGCCAGGGATCAGCCTGATCCCCCTC
579 GTGCGGGCTCTCAGTCGACCGGAGAGGC-ATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTC
* * * * *
12712177 TGTGTGCTGTCGATCCCGCTATCGGTCTTGCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACA
643 TGCGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCACAACCC-TCGTCCGGCTGGGGCTTAGACA
* * ** *
12712242 TGGAATGAACTCCGTATGCCTAAGCCAGCCCAC-AAAAGCAATGTGCAGGCGCTCAGCCGACCGA
707 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCAGCCG-CCGA
* * * * * ** * *
12712306 AGAGGCAGAATGCACAAGTCAGGGATCAGCCCGGTCCCTCCTGCGTGCTACCGATCCTACTACTG
770 AGAGGTAGAATGCGCAAGCCAGGGATCGGCCC-GTCCCCCCTGCGTGCTGTCGATCCTGCTGCTG
12712371 GT-CTGACTA-CGACAACCCTCGGTCCAGTCTG
834 GTCCTG-CTACCG-CAACCCTCGGTCCAGTCTG
* * *
12712402 ATCTTAGACTAGGAATGAACCCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * * * * *
12712467 CCGTGAAACGAGGGTGCAGGCGCTTAACCGATCGGAGAGGCAAAATGCACT-AGCCGGGGATCGA
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCA-TAAGCCGAGGATCGG
* * * * *
12712531 ACCGGTCCCCCTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGCCTGATCTTAGACT
130 CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGTCT
* * * * * * **
12712596 GGGAATAAACTCTGTATGCATAAGTCAACGCATGAAATGAGCGTGCAGGCTCTGAGCCGGTTGAA
195 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCGAA
** *** * * * * * *
12712661 GAGGCATAATGTGCAAGACGGGGATCGACCCGATCCCCCTTTACATGCTGTCGATCCCGCTGCCA
260 GAGGCATAATGCACAAGTTAGGGATCGGCCCGAT-CCCCTCTGCGTGCTGCCGGTCCCGCTGCCA
* *
12712726 CAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-A
324 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * * *
12712790 A-------------GCTCAGTCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGATCC
389 ACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCCCGGTCC
** * * * * *
12712842 CCCCTATGTGCTATCAATCCTACTG-TCGCAACCCTCGGTTCGAACCGATCTTACACTGGGAATG
454 CCCCTGCGTGCTATCGATCCTACTGCT-GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
* *
12712906 AACTCTGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTC
518 AACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
* *
12712971 GGGTGCTCAGTCGGTCGGAGAGGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGG
583 -GG-GCTC--TCAGTC---GA--CC-G--G-AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGG
* * * * *
12713036 TCCCCCTCTACGTGCTGTCGAT-GCGCTACCAGTCCTGCAGTCACAACCCTCGGTCCGGCTGGGG
635 TCCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCACAACCCTC-GTCCGGCTGGGG
* * *
12713100 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCATGCGGGCACTCAGC
699 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
12713165 CGGTCGAAGAGGTAGAATGCGCAAGCC-GAGGATCGGCCCGATCCCTCTCTGCGTGCTGTCGATC
764 C-GCCGAAGAGGTAGAATGCGCAAGCCAG-GGATCGGCCCG-TCCC-CCCTGCGTGCTGTCGATC
* * * * * * * *
12713229 CTACTGCGGGTCCTACTTCCACAACCCTCGGTTCGGTCTA
825 CTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCAGTCTG
* *
12713269 ATCTTAGACTGGGAATTAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
12713334 CTATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCATAAGCCGAGGATTGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCCGAGGATCGGC
* * *** *
12713399 CCAGTCCCCCCTACGTGTTGTCGATCCTGCTATTACAACCCTCGGT-TCGATCTGATCTTAGTCT
131 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCT-GGTCTGATCTTAGTCT
* * *
12713463 GGGAATGAACT-CGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGACCGAA
195 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCGAA
* * * **
12713527 GAGGCATAATGCCCAAGTTAGGGATCGGCCCGGTCCACCTCTGTGTGCTGTAGGTCCCGCTGCCA
260 GAGGCATAATGCACAAGTTAGGGATCGGCCCGATCC-CCTCTGCGTGCTGCCGGTCCCGCTGCCA
* * *
12713592 CAGCCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAA
324 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * *
12713657 ACGGGTGTGCGGGCGCTCAGTC-AGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACGCCCGG
389 ACGGGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATACGCAAGCCAGGGATCG--GCCCGG
* * * * * * *
12713721 TCCCTCCTGCTTGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTACACTGGGAA
451 TCCCCCCTGCGTGCTATCGATCCTACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
* * * *
12713786 TGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGACTAAGTCAACACATGAAACGACCGT
516 TGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* * *
12713851 GCGGGCTCTCAGTCGACCGGAGAGGCATAATTCGTAAGCTGGGGAAT-AGCCCGGTCCCCCTCTG
581 GCGGGCTCTCAGTCGACCGGAGAGGCATAATGCGCAAGCCGGGG-ATCAGCCCGGTCCCCCTCTG
* * * ** * *
12713915 CATGCTGCCGATCCTGCTACCGGTTTTGCTGCCACAACCCTCATTCGGCTGGGGCTTAGACATGG
645 CGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGG
* * * * *
12713980 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACTAGTCGGAGAG
710 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-CGCCGAAGAG
* *
12714045 GTAGAATGCGTAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACTGGTC
774 GTAGAATGCGCAAGCCAGGGATCGGCCC-GTCCCCC-CTGCGTGCTGTCGATCCTGCTGCTGGTC
* *
12714110 CTGCTACCGCAACCTTCGGTCCAGTTTG
837 CTGCTACCGCAACCCTCGGTCCAGTCTG
* * *
12714138 ATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACATGGAATGGACTCCTTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** *
12714203 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCC-AGGGATTGG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCCGA-GGATCGG
** * * * * * ** **
12714267 CCTAGTCCACCCCTACGTGCTATCGATCTTGCTACTGTAACCCTCAGTCCAGTCCAATCTTAGAT
130 CCCGGTCC-CCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAG-T
* * * * *
12714332 -TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATTCGGGCACTGAGCCGGCCG
193 CTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCG
* * * * * * *
12714396 GAGGGGCATAATGCATAAG-TCGGGGTCAGCCCGATCCCCGTCTGTGTGCTGCCGGTCCCGCTGC
258 AAGAGGCATAATGCACAAGTTAGGGATCGGCCCGATCCCC-TCTGCGTGCTGCCGGTCCCGCTGC
* * *
12714460 CACAACCCTCGGTCTGGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
322 CACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
12714525 AAACGGGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCTCGGT
387 AAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCCCGGT
* * * * *
12714590 CCCCCCTGCGCGCTACCAATCCTACTGCCGCAACCCTCGGTTCGGA-CTGATCTTAGACTGGGAA
452 CCCCCCTGCGTGCTATCGATCCTACTGCTGCAACCCTCGG-TCCGATCTGATCTTAGACTGGGAA
* * * *** *
12714654 TGAACTCTGTATGCTTAGATTGGGGATGAAATTCATATGCCTAAGTCAACCCGCAAAACGAGCAT
516 TGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* * ** *
12714719 G-GGGGTGCTCAGCGGGTCGGAGAGGCCGGTCAAAGAGGCATAATGCACAAGCCGATGAGCAGCC
581 GCGGGCT-CTCA----GTC---GA--CCGG----AGAGGCATAATGCGCAAGCCGGGGATCAGCC
* * * * * * * * *
12714783 CAGTCCTCCTCTGCGTGCTGTCAATCCCACTGCCGAT-C--CAGCCACAACCCTTAGTCCGACTG
632 CGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCACAACCC-TCGTCCGGCTG
* * *
12714845 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCAAAACGAGCGTGCGGGGGCTC
696 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * ** * *
12714910 AGCCGGCTGAAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGACCCCCCTGCGTGCTGTCGATC
761 AGCC-GCCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGTCCCCCCTGCGTGCTGTCG---
** * *
12714975 CTACTGCTGGTCCTGCTGCTGGTCCTGCTGTCGCAACCCTCGGTCTAGTCCG
822 --A-------TCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCAGTCTG
* *
12715027 ATCTTTGACTGGGAATTAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * **
12715092 CCACAAAACAAGCGTGCGGGGGCTCAGCCGG-CTGGAGAGACAGAATACGCAAGCC-AGGGATCG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC-GGAGAGGCAGAATGCATAAGCCGA-GGATCG
* * *
12715155 GCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGTC
129 GCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGTC
* * * * **
12715220 TGGGAATGAACTCCGTATGAACAAGTCAACCCACGAAACGAGCGTGCGGGCCCTGAGCCGATCGA
194 TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCGA
* * * *
12715285 AGAGGCATAATGCACAAGTCAGGGAT-GGCCCGATCCCTCTCTGCGTGTTACAGGTCCCGCTGCC
259 AGAGGCATAATGCACAAGTTAGGGATCGGCCCGATCCC-CTCTGCGTGCTGCCGGTCCCGCTGCC
* * * *
12715349 ACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTACCTACGCCTAAGCCAACCCACGA
323 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * *
12715414 AATGGGTGCGCCGGTGCTCAGCCGACCGGAGAGGCAGAATACGTAAGCCAGGGA-CTGGCCCGGT
388 AACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCAGGGATC-GGCCCGGT
* * * * * * *
12715478 CCCCCATGCGTGCTGTCGATCCTACTGCCAGTAACCCTCGGTCCGATCTGATCCTAGGCTAGGAA
452 CCCCCCTGCGTGCTATCGATCCTACTG-CTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
* * * *
12715543 TGAACTCCATATGCTTAGATTGGGGATGAACTCCGTAT-CCTTAAGTCAACCCATGAAACAAGCA
516 TGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCC-TAAGTCAACCCATGAAACGAGCG
* ** ** * * * *** *
12715607 TGCGGGCGCTCAACCGGTCGGAGAGGCATAATGTGTAAGCCGAGGATCAGCCCGGTCCATTTTTG
580 TGCGGGCTCTCAGTCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTG
* ** * *
12715672 CATGCTACCGATCCCGCTGCCGGTCCTG-TAGCCATAACCCTCGGTCCGGCTGGGGCTTAGACAT
645 CGTGCTGTCGATCCCGCTACCGGTCCTGCT-GCCACAACCCTC-GTCCGGCTGGGGCTTAGACAT
* * * * * *
12715736 GGCATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGTGTGCGAGCGCTCAGCCGGCCGGAG
708 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCGAAG
* ** * * * *
12715801 AGGTAGAATGCGCGAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCTAGT
772 AGGTAGAATGCGCAAGCCAGGGATCGGCCC-GTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGT
* *
12715866 CCTGCTACTGCAACCCTCGGTTC-GATCTG
836 CCTGCTACCGCAACCCTCGGTCCAG-TCTG
* *
12715895 ATCTTAGACTGGGAATG-ACTCCATATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * * *
12715959 CCTCGAAGCGGGCGTGCGGCCGTTCAGCTGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCCGAGGATCGGC
* * * *
12716024 CCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCCGTCTGGTCTGATCTTAGACTG
131 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGTCTG
*
12716089 GGAATGAACTCTGTATGC
196 GGAATGAACTCCGTATGC
12716107 TTAGACTGGG
Statistics
Matches: 3054, Mismatches: 540, Indels: 224
0.80 0.14 0.06
Matches are distributed among these distances:
854 4 0.00
855 147 0.05
856 3 0.00
857 2 0.00
859 4 0.00
862 1 0.00
864 1 0.00
865 6 0.00
866 270 0.09
867 433 0.14
868 176 0.06
869 640 0.21
870 227 0.07
871 60 0.02
872 4 0.00
873 2 0.00
875 5 0.00
876 52 0.02
877 18 0.01
878 23 0.01
879 209 0.07
880 63 0.02
881 52 0.02
882 118 0.04
883 1 0.00
885 1 0.00
887 2 0.00
888 282 0.09
889 245 0.08
890 3 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (864 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCCGAGGATCGGC
CCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGTCTG
GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCGAAG
AGGCATAATGCACAAGTTAGGGATCGGCCCGATCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACA
ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCCCGGTCCCC
CCTGCGTGCTATCGATCCTACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
CTCTCAGTCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCT
GTCGATCCCGCTACCGGTCCTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAA
CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCGAAGAGGTAGAAT
GCGCAAGCCAGGGATCGGCCCGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCG
CAACCCTCGGTCCAGTCTG
Found at i:12714191 original size:26 final size:26
Alignment explanation
Indices: 12714140--12714192 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12714130 CCAGTTTGAT
*
12714140 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12714166 CTTAGACAT-GGAATGGACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12714192 C
1 C
12714193 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12714667 original size:158 final size:157
Alignment explanation
Indices: 12714166--12714667 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 157
12714156 AGTCCGTATG
* * * * *
12714166 CTTAGACATGGAATGGACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
* * ** * * * *
12714231 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCTAGTCCACCCCTACGTGCTATCGATCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCC-GGTCC-CCCCTGCGTGCTACCGATCC
* * * * * * * **
12714296 TGCTACTGTAACCCTCAGTCCAGTCCAAT
129 TGCTGCCGCAACCCTCGGTTCGGACTGAT
* * * * * *
12714325 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * ** * * * * * *
12714389 CCGGCCGGAGGGGCATAATGCATAAGTCGGGG-TCAGCCCGATCCCCGTCTGTGTGCTGCCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCGGTCCCC-CCTGCGTGCTACCGATC
* * **
12714453 CCGCTGCCACAACCCTCGG-TCTGGA-TGGGG
128 CTGCTGCCGCAACCCTCGGTTC-GGACT-GAT
* *
12714483 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
* * * *
12714548 CGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGCGCTACCAATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGC-CGGTCCCCCCTGCGTGCTACCGATCCT
*
12714613 ACTGCCGCAACCCTCGGTTCGGACTGAT
130 GCTGCCGCAACCCTCGGTTCGGACTGAT
*
12714641 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
12714668 TTAGATTGGG
Statistics
Matches: 262, Mismatches: 70, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.02
158 164 0.63
159 94 0.36
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCGGTCCCCCCTGCGTGCTACCGATCCTG
CTGCCGCAACCCTCGGTTCGGACTGAT
Found at i:12714993 original size:12 final size:12
Alignment explanation
Indices: 12714973--12715004 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
12714963 GTGCTGTCGA
*
12714973 TCCTACTGCTGG
1 TCCTGCTGCTGG
12714985 TCCTGCTGCTGG
1 TCCTGCTGCTGG
12714997 TCCTGCTG
1 TCCTGCTG
12715005 TCGCAACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.34, G:0.28, T:0.34
Consensus pattern (12 bp):
TCCTGCTGCTGG
Found at i:12715347 original size:158 final size:158
Alignment explanation
Indices: 12715064--12715555 Score: 367
Period size: 158 Copynumber: 3.1 Consensus size: 158
12715054 GCTTAGACAT
* ** *
12715064 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGGGCTCAGCCGGCTGGAG
1 GGAATGAACTCCGTATGACTAAGCCAACCCACAAAACAAGCGTGCGGGCCCTCAGCCGGCTGAAG
* *
12715129 AGACAGAATACGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACA
66 AGACAGAATACACAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCCGCTGCCACA
12715194 ACCCTCGGTCTGGTCTGATCTTAGTCTG
131 ACCCTCGGTCTGGTCTGATCTTAGTCTG
* * * * *
12715222 GGAATGAACTCCGTATGAAC-AAGTCAACCCACGAAACGAGCGTGCGGGCCCTGAGCC-GATCGA
1 GGAATGAACTCCGTATG-ACTAAGCCAACCCACAAAACAAGCGTGCGGGCCCTCAGCCGGCT-GA
* * * * * * *
12715285 AGAGGCATAATGCACAAGTCAGGGAT-GGCCCGATCCCTCTCTGCGTG-T-TACAGGTCCCGCTG
64 AGAGACAGAATACACAAGCCAGGGATCGGCCCGATCCC-CCCTACGTGCTGT-C-GATCCCGCTG
* * ** *
12715347 CCACAACCCTCGATCCGG-CTAGGGCTTAGACAT-
126 CCACAACCCTCGGTCTGGTCT-GATCTTAGTC-TG
* * * * * ** * *
12715380 GGAATGAACTACC-TACGCCTAAGCCAACCCAC-GAA-ATGGGTGCGCCGGTGCTCAGCCGACCG
1 GGAATGAACT-CCGTATGACTAAGCCAACCCACAAAACAAGCGTGCG--GGCCCTCAGCCGGCTG
* * ** * * * **
12715442 GAGAGGCAGAATACGTAAGCCAGGGA-CTGGCCCGGTCCCCCATGCGTGCTGTCGATCCTACTGC
63 AAGAGACAGAATACACAAGCCAGGGATC-GGCCCGATCCCCCCTACGTGCTGTCGATCCCGCTGC
* * * * * *
12715506 CAGTAACCCTCGGTCCGATCTGATCCTAGGCTA
127 CA-CAACCCTCGGTCTGGTCTGATCTTAGTCTG
*
12715539 GGAATGAACTCCATATG
1 GGAATGAACTCCGTATG
12715556 CTTAGATTGG
Statistics
Matches: 258, Mismatches: 56, Indels: 39
0.73 0.16 0.11
Matches are distributed among these distances:
156 7 0.03
157 20 0.08
158 181 0.70
159 47 0.18
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GGAATGAACTCCGTATGACTAAGCCAACCCACAAAACAAGCGTGCGGGCCCTCAGCCGGCTGAAG
AGACAGAATACACAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCCGCTGCCACA
ACCCTCGGTCTGGTCTGATCTTAGTCTG
Found at i:12715934 original size:25 final size:26
Alignment explanation
Indices: 12715897--12715948 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
12715887 TCGATCTGAT
12715897 CTTAGACTGGGAATG-ACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12715922 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12715948 C
1 C
12715949 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12716109 original size:26 final size:26
Alignment explanation
Indices: 12716080--12716132 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12716070 CTGGTCTGAT
*
12716080 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTGGGGAA-AAACTCTGTATG
12716106 CTTAGACTGGGGAAAAACTCTGTATG
1 CTTAGACTGGGGAAAAACTCTGTATG
12716132 C
1 C
12716133 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGAAAAACTCTGTATG
Found at i:12716841 original size:26 final size:26
Alignment explanation
Indices: 12716803--12716855 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12716793 GGCTCAAAAT
12716803 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12716829 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
12716855 C
1 C
12716856 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12717189 original size:26 final size:26
Alignment explanation
Indices: 12717146--12717198 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12717136 CCGATCCAAT
12717146 CTTAGACTGGGAACGAAC-TCTGTATG
1 CTTAGACTGGGAACGAACTTC-GTATG
* * *
12717172 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTTCGTATG
12717198 C
1 C
12717199 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTTCGTATG
Found at i:12717440 original size:356 final size:356
Alignment explanation
Indices: 12716800--12717617 Score: 868
Period size: 356 Copynumber: 2.3 Consensus size: 356
12716790 CGTGGCTCAA
12716800 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCA
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCA
* * * *
12716864 ACCAACGAAACGAGCATGCGGGCGCTCAGCCGGTC-G-GA---GAGGCATAATGTACAAGGCAGG
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCGAGGCATAATGCACAAGCCAGG
* * *
12716924 GATCAGCTCGATCCCCCTCTGCGTGCTGTCAATCTCGCTACCACAACCCTCGGTCCAGCTGGGGC
130 GATCAACTCGATCCCCCTCTGCGTGCTGTCAATCTCACTACCACAACCCTCGGTCCAGCTAGGGC
* * * *
12716989 TCAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGTGCTCAGCC
195 TCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
12717054 GGCTGGAGAGGCAGAATGCACAAACCGGGGATCAGCCCGGTCCCCCCTGTATGCTACTGAT-C-C
260 GACTGGAGAGGCAGAAAGCACAAACCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCGC
12717117 TGCT-G-T-C-G-C-AACCCTTGGTCC-GATCC
325 TGCTGGTTGCTGCCGAACCCTTGGTCCAG-TCC
* * * *
12717143 AATCTTAGACTGGGAACGAACTCTGTATGCTTAGA-TTGGGGATGAACTTCGTATGCCTAAGTCA
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCA
* *
12717207 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCAGAGAGGCCGACCTGAGCAACATAATGCGC
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGG-CGA---G-G---CATAATGCAC
* * *
12717272 AAGCC-GAGGATCAACTCGGTCCCCTTCTGCGTGCT-TCCAATC-CTACTGCCACAACCCTCGGT
122 AAGCCAG-GGATCAACTCGATCCCCCTCTGCGTGCTGT-CAATCTC-ACTACCACAACCCTCGGT
* * * *
12717334 CC-GACTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
184 CCAG-CTAGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC
* * *** * * ** *
12717398 GGGCGCTC-GATCGATTGGAGAGGCAGAAAGTGTAAGCCGGGGATCGGTTCGGTCCCCCCTGCGT
248 GGGCGCTCAG-CCGACTGGAGAGGCAGAAAGCACAAACCGGGGATCAGCCCGGTCCCCCCTGCAT
* *
12717462 GCTGCCGATCCTGCTGCTGGTCTTGCTGCCGTAACCCTTGGTCCAGTCT
312 GCTACCGATCC-GCTGCTGG--TTGCTGCCG-AACCCTTGGTCCAGTCC
* * ** *
12717511 GATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
* * * *
12717576 CCCACGAAACGAGCGAGCGAGCGCTCAACCGGCCAGAGAGGC
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGC
12717618 AGAATGCGTA
Statistics
Matches: 387, Mismatches: 54, Indels: 44
0.80 0.11 0.09
Matches are distributed among these distances:
342 1 0.00
343 87 0.22
344 3 0.01
345 2 0.01
349 2 0.01
352 1 0.00
353 1 0.00
355 5 0.01
356 167 0.43
357 1 0.00
359 5 0.01
360 1 0.00
363 1 0.00
364 1 0.00
365 1 0.00
366 1 0.00
367 1 0.00
368 104 0.27
369 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (356 bp):
AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCGAGGCATAATGCACAAGCCAGGG
ATCAACTCGATCCCCCTCTGCGTGCTGTCAATCTCACTACCACAACCCTCGGTCCAGCTAGGGCT
CAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
ACTGGAGAGGCAGAAAGCACAAACCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCGCT
GCTGGTTGCTGCCGAACCCTTGGTCCAGTCC
Found at i:12717676 original size:356 final size:343
Alignment explanation
Indices: 12716800--12717764 Score: 861
Period size: 356 Copynumber: 2.7 Consensus size: 343
12716790 CGTGGCTCAA
*
12716800 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
12716865 CCAACGAAACGAGC-ATGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGTACAAGGCAGGGATCA
66 CCCACGAAACGAGCGA-GCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAA-GCAGGGATCA
*
12716929 GCTCGATCCCCCTCTGCGTGCTGTCAAT-CTCGCTA---CCACAACCCTCGGTCC-AGCTGGGGC
129 GCTCG-T-CCCCTCTGCGTGCTGTCAATACT-GCTACTGCCACAACCCTCGGTCCGA-CTAGGGC
* * * * * *
12716989 TCAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGTGCTCAGCC
190 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
12717054 GGCTGGAGAGGCAGAATGCACAAACCGGGGATCAGCCCGGTCCCCCCTGTATGCTACTGATCCTG
255 GACTGGAGAGGCAGAAAGCACAAACCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCTG
12717119 CTGTCGCAACCCTTGGTCCGATCC
320 CTGTCGCAACCCTTGGTCCGATCC
* * * * *
12717143 AATCTTAGACTGGGAACGAACTCTGTATGCTTAGA-TTGGGGATGAACTTCGTATGCCTAAGTCA
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* *
12717207 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCAGAGAGGCCGACCTGAGCAACATAATGCGC
65 ACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGTCAGAGA-G--G--C--AG------AATGCGC
* *
12717272 AAGCCGAGGATCAACTCGGTCCCCTTCTGCGTGCT-TCCAAT-C--CTACTGCCACAACCCTCGG
117 AAGCAG-GGATCAGCTC-GTCCCC-TCTGCGTGCTGT-CAATACTGCTACTGCCACAACCCTCGG
* *
12717333 TCCGACTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
178 TCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
* * *** * * ** *
12717398 GGGCGCTC-GATCGATTGGAGAGGCAGAAAGTGTAAGCCGGGGATCGGTTCGGTCCCCCCTGCGT
243 GGGCGCTCAG-CCGACTGGAGAGGCAGAAAGCACAAACCGGGGATCAGCCCGGTCCCCCCTGCAT
* *
12717462 GCTGCCGATCCTGCTGCTGGTCTTGCTGCCGTAACCCTTGGTCC-AGTCT
307 GCTACCGAT-C--CTGCT-G---T-C-G-C--AACCCTTGGTCCGA-TCC
* * **
12717511 GATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
12717576 CCCACGAAACGAGCGAGCGAGCGCTCAACCGGCCAGAGAGGCAGAATGCGTAAGCTAGGGATCGG
66 CCCACGAAACGAGCGAGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGC-AGGGATCAG
* * * * * **
12717641 CCCAGTCCCC-CTACGTGCTGTCGATACTGCTACTG---CAACCCTCGGTCCG-GTCCGATCTTA
130 CTC-GTCCCCTCTGCGTGCTGTCAATACTGCTACTGCCACAACCCTCGGTCCGACT-AGGGCTTA
* * * * * *
12717701 TAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCAGGCACTGAGCCGA
193 GACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
12717765 TCAAGGAGGC
Statistics
Matches: 501, Mismatches: 75, Indels: 82
0.76 0.11 0.12
Matches are distributed among these distances:
342 1 0.00
343 91 0.18
344 1 0.00
346 1 0.00
348 1 0.00
350 1 0.00
352 2 0.00
353 84 0.17
354 3 0.01
355 32 0.06
356 162 0.32
357 3 0.01
359 5 0.01
360 1 0.00
361 2 0.00
363 2 0.00
364 1 0.00
365 2 0.00
366 1 0.00
367 2 0.00
368 102 0.20
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGAGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCAGGGATCAGC
TCGTCCCCTCTGCGTGCTGTCAATACTGCTACTGCCACAACCCTCGGTCCGACTAGGGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACTGG
AGAGGCAGAAAGCACAAACCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCTGCTGTCG
CAACCCTTGGTCCGATCC
Found at i:12724960 original size:158 final size:159
Alignment explanation
Indices: 12724644--12725350 Score: 583
Period size: 159 Copynumber: 4.4 Consensus size: 159
12724634 GCTCAAGTGG
* * *
12724644 CCCGAACGCCTCGATTTTGTGGGTTGAACTTAGGCATAACG-AGTGGCATTTCCAGTCTAAGAT-
1 CCCGAACG-CTCG-TTTCGTGGGTTG-ACTTAGGCAT-ACGAAGT-TCATTCCCAGTCTAAGATC
* * ** * * *
12724707 GGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACCCAAGAAGGGAAC-GGGCCAGT-CCC
61 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA-CGTAGAGGGGGACTGGGCCAATCCCC
* * *
12724770 TGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCA
125 AG-CTTGCACATTCTGCCTCTCCGGCCAGCTGAGCA
* *
12724806 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC
1 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
* * **
12724871 GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG-GGGGGACTAGGTCGGTCCCCAGCTTG
66 GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACTGGGCCAATCCCCAGCTTG
* *
12724935 CACATTCTGCCTCTCCGGCCGGCTGAGCG
131 CACATTCTGCCTCTCCGGCCAGCTGAGCA
* * * * * * * * **
12724964 CCCGTATGC-CTGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATT-CCATGTCTAAG-CCCCA
1 CCCGAACGCTC-GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGGA
** * * * * * ** *
12725026 GCCGGACATAGTGTTGTGGCAG-TGAGACCGATAGCACACAGAGGGGGACCGGGCCAATCCCCAG
64 -CCGGACCGAGGGTTGCGGCAGCAG-GATCGACAGCACGTAGAGGGGGACTGGGCCAATCCCCAG
* * *
12725090 CTTGCGCATTATGCCTCTCCGGCCGGCAT-AGCA
127 CTTGCACATTCTGCCTCTCCGGCCAGC-TGAGCA
12725123 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
1 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
* ** * * * * *
12725188 GAACTAAGGGTTGCGGTAGCAAGATCGACAGCACGTAG-GGGGGACTGGACCGATCCCCGGCTAG
66 GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACTGGGCCAATCCCCAGCT--
* * *
12725252 CGCATTCTACCTCTCCAATCAGCCTCTCCGACCAGCTGAGCG
129 TGCA--C-A--T-T-C--T--GCCTCTCCGGCCAGCTGAGCA
* *
12725294 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAG
1 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAG
12725351 CATACGGAGT
Statistics
Matches: 435, Mismatches: 81, Indels: 49
0.77 0.14 0.09
Matches are distributed among these distances:
157 12 0.03
158 148 0.34
159 168 0.39
160 20 0.05
161 4 0.01
162 8 0.02
163 1 0.00
165 1 0.00
166 1 0.00
169 1 0.00
170 2 0.00
171 69 0.16
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (159 bp):
CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACTGGGCCAATCCCCAGCTTG
CACATTCTGCCTCTCCGGCCAGCTGAGCA
Found at i:12725360 original size:26 final size:26
Alignment explanation
Indices: 12725324--12725376 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12725314 GTTGACTTAG
12725324 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12725350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12725376 G
1 G
12725377 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12725694 original size:26 final size:26
Alignment explanation
Indices: 12725660--12725712 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12725650 ATTGGCTTAG
*
12725660 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12725686 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12725712 G
1 G
12725713 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12726429 original size:26 final size:26
Alignment explanation
Indices: 12726393--12726445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12726383 GTTGACTTAG
*
12726393 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12726419 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12726445 G
1 G
12726446 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12727078 original size:316 final size:317
Alignment explanation
Indices: 12726419--12727237 Score: 952
Period size: 316 Copynumber: 2.6 Consensus size: 317
12726409 CCCAGTCTAA
* * * * ** * * *
12726419 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTATGGCACCAGAATCTG-C
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACAGTAGCAGGAT-TGAC
* * * **
12726483 TGCACGTA-GAGGGGACC-AGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGGTTGAGC
65 AGCACGCAGGA-GGGACCGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGC
* * * * **
12726546 ACCTGCACACCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGT
128 ACCCGCACGCCCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * *
12726611 CAGACCGAGGGTTGTGGCAGCGAGACCAACAACATGCAGAGGGGGACTGGGCCGATCCCCAGCTT
193 CAGACCGAGGGTTGTGGCAGCGAGACCAACAACACGCAGAGGGAGACCGAGCCAATCCCCAGCTT
* *
12726676 GCACATTATGCCTCTACAGCCGGCATAGTGCCCAAACGCTCGTTTCATGGGTTGACTTAG
258 GCACATTATGCCTCTACAGCCAGCATAGTGCCCAAACGCTCATTTCATGGGTTGACTTAG
* * *
12726736 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTAC-G-ATGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACAGTA-GCAGGATTGAC
* * * * *
12726799 AGGACGCAGGAGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGA-TCGACTGAGCA
65 AGCACGCAGGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACT-GACTGAGCA
*
12726863 CCCGCACGCCCATTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
129 CCCGCACGCCCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
* * ** * *
12726928 AGATCGAGGGTTGTGGCAGCGAGATCGGCAGCACGCAGAGGGAGACCGAGCCAATCCCCGGCTTG
194 AGACCGAGGGTTGTGGCAGCGAGACCAACAACACGCAGAGGGAGACCGAGCCAATCCCCAGCTTG
** * * ** * *
12726993 TGCATTATGCCTCTTC-GACCAGC-TCTGTGCCCGCACGCTCATTTCTTGGGTTGACTTAT
259 CACATTATGCCTCTACAG-CCAGCAT-AGTGCCCAAACGCTCATTTCATGGGTTGACTTAG
*
12727052 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACAGTAGCAGGATTGACA
* * * * * *
12727117 GCATGCAGGGGGGACCGAGCCAATCCCCGGCTTGCACATTTTGCCTCTCCGGCTGACTGAGCACC
66 GCACGCAGGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGCACC
* * * * * *
12727182 CGCAGGCTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
131 CGCACGCCCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
12727238 ATACGGAGTT
Statistics
Matches: 423, Mismatches: 69, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
315 6 0.01
316 258 0.61
317 157 0.37
318 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACAGTAGCAGGATTGACA
GCACGCAGGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGCACC
CGCACGCCCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAG
ACCGAGGGTTGTGGCAGCGAGACCAACAACACGCAGAGGGAGACCGAGCCAATCCCCAGCTTGCA
CATTATGCCTCTACAGCCAGCATAGTGCCCAAACGCTCATTTCATGGGTTGACTTAG
Found at i:12727214 original size:158 final size:156
Alignment explanation
Indices: 12726419--12727236 Score: 520
Period size: 159 Copynumber: 5.2 Consensus size: 156
12726409 CCCAGTCTAA
* * * * * *
12726419 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTATG-GCACCAGAATCT-
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAGGG-T-TGCG-AGCAGGAT-TG
* * * * * * * * **
12726481 GCTGCACGTAGAGGGGACC-AGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGGTTGAG
61 GCAGCACGCAGGGGGGACCGA-GCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGACTGAG
* * * * *
12726545 CACCTGCACACCCGTTTCATGGGTTGGCTTAG
125 CACCCGCACGCTCATTTCATGGGTTGACTTAG
** * * * *
12726577 GCATA-GAGAGTTCATTCCATGTCTAAGCCCCAGTCAG-ACCGAGGGTTGTG-GCAGCGA--GAC
1 GCATACG-GAGTTCATTCCATGTCTAAG-ATCAGACCGAACCGAGGGTTGCGAGCAG-GATTG-G
* * * * * * * * * *
12726637 CAACAACATGCAGAGGGGGACTGGGCCGATCCCCAGCTTGCACATTATGCCTCTACAGCCGGCAT
62 CAGC-AC--GCAG-GGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGAC-T
** ** *
12726702 -AGTGCCCAAACGCTCGTTTCATGGGTTGACTTAG
122 GAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
12726736 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGAACTGAGGGTTACGATGCAGGATTGGCA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAGGGTTGCGA-GCAGGATTGGCA
* * * * ** * *
12726800 GGACGCAGGAGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTC-GATCGACTGAGCAC
64 GCACGCAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCT-GACTGAGCAC
* * *
12726864 CCGCACGCCCATTTCATGGATTGGCTTAG
128 CCGCACGCTCATTTCATGGGTTGACTTAG
* ** * * *
12726893 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC-AGATCGAGGGTTGTG-GCAGCGAGATCG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGA-ACCGAGGGTTGCGAGCA--G-GATTG
* * * * *
12726955 GCAGCACGCAGAGGGAGACCGAGCCAATCCCCGGCTTGTGCATTATGCCTCTTCGACCAGCTCTG
61 GCAGCACGCAG-GGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTTCG-GCTG-ACTG
* * *
12727020 TG--CCCGCACGCTCATTTCTTGGGTTGACTTAT
123 AGCACCCGCACGCTCATTTCATGGGTTGACTTAG
*
12727052 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGCAGTAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAGGGTTGC-G-AGCAGGATTGGC
* * * *
12727116 AGCATGCAGGGGGGACCGAGCCAATCCCCGGCTTGCACATTTTGCCTCTCCGGCTGACTGAGCAC
63 AGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGACTGAGCAC
* * * * *
12727181 CCGCAGGCTCGTTTCGTGGTTTGGCTTAG
128 CCGCACGCTCATTTCATGGGTTGACTTAG
*
12727210 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12727237 CATACGGAGT
Statistics
Matches: 504, Mismatches: 115, Indels: 82
0.72 0.16 0.12
Matches are distributed among these distances:
155 8 0.02
156 15 0.03
157 107 0.21
158 140 0.28
159 204 0.40
160 16 0.03
161 10 0.02
162 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACCGAGGGTTGCGAGCAGGATTGGCAGC
ACGCAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGACTGAGCACCCG
CACGCTCATTTCATGGGTTGACTTAG
Found at i:12727985 original size:26 final size:26
Alignment explanation
Indices: 12727933--12727985 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12727923 GTTGACTTAG
**
12727933 GCATACAGAGTTCATCCCTAGTTTAA
1 GCATACAGAGTTCATCCCTAGCCTAA
* *
12727959 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACAGAGTTCATCCCTAGCCTAA
12727985 G
1 G
12727986 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGCCTAA
Found at i:12728312 original size:26 final size:26
Alignment explanation
Indices: 12728278--12728328 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12728268 TGACTTAGGC
*
12728278 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
12728304 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12728329 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:12728598 original size:171 final size:171
Alignment explanation
Indices: 12728304--12728670 Score: 441
Period size: 171 Copynumber: 2.1 Consensus size: 171
12728294 ATGTCTAAGT
* *
12728304 ATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCAGCAGCACGACCAGCAGT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCAGCAGCACGACCAGCAGC
* * * * * * *
12728369 AGGATCAGCAGCACACAGAGGGGGACCAGGTTGATCTCCGACTTGCGCATTCTGCCTCTCTGGCT
66 AGGATCAGCAGCACACAGAGGGGGACCAGGCTGATCCCCGAATTACGCATTATGCCTCTCCGACT
* * *
12728434 GGCTGAGCGCCTGCATGCTCGTTTCGTGGCTTGGCTTAGGC
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGC
* * * ** * * *
12728475 ATACGGAGTTCATT-CCATGTCTAAGCTCTAGCCAGATCGAGGGTTGTGGTAGCATGACCAGTAG
1 ATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGATCGAGGGTTGCAGCAGCACGACCAGCAG
* * * *
12728539 CGGGATCGGCTA-CACGCAGAGGGGGACCGGGCTGATCCCCGAATTACGCATTATGCCTCTCCGA
65 CAGGATCAGC-AGCACACAGAGGGGGACCAGGCTGATCCCCGAATTACGCATTATGCCTCTCCGA
* * *
12728603 CTGGGTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGC
129 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGC
* *
12728646 ATACGGAGTTCATCCCCAATCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12728671 CATACGAGTT
Statistics
Matches: 164, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
170 3 0.02
171 157 0.96
172 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (171 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCAGCAGCACGACCAGCAGC
AGGATCAGCAGCACACAGAGGGGGACCAGGCTGATCCCCGAATTACGCATTATGCCTCTCCGACT
GGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGC
Found at i:12728682 original size:25 final size:26
Alignment explanation
Indices: 12728644--12728695 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12728634 GTTGACTTAG
12728644 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
12728670 GCATAC-GAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12728695 G
1 G
12728696 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12729908 original size:26 final size:26
Alignment explanation
Indices: 12729878--12729930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12729868 GTTGACTTAG
12729878 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
12729904 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
12729930 G
1 G
12729931 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:12730249 original size:26 final size:26
Alignment explanation
Indices: 12730220--12730272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12730210 ATTGACTTAG
12730220 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12730246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12730272 G
1 G
12730273 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12736579 original size:26 final size:26
Alignment explanation
Indices: 12736529--12736581 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12736519 GTTGACTTAG
*
12736529 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
12736555 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
12736581 G
1 G
12736582 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:12737107 original size:12 final size:12
Alignment explanation
Indices: 12737090--12737120 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
12737080 GTAGTAGGAC
12737090 CGGCAGCGAGAT
1 CGGCAGCGAGAT
12737102 CGGCAGCGAGAT
1 CGGCAGCGAGAT
12737114 CGGCAGC
1 CGGCAGC
12737121 ATGGATAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.42, T:0.06
Consensus pattern (12 bp):
CGGCAGCGAGAT
Found at i:12737262 original size:26 final size:26
Alignment explanation
Indices: 12737226--12737278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12737216 GTTGACTTAG
12737226 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
12737252 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12737278 G
1 G
12737279 ATCGTACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12737572 original size:159 final size:158
Alignment explanation
Indices: 12737389--12737753 Score: 398
Period size: 158 Copynumber: 2.3 Consensus size: 158
12737379 CCCGCACACC
* * *
12737389 CGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAATTGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAACGAATTGAGGG
* * * * *
12737454 TTG-TGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGGGTC-GAT-CCTCGGCTTGCGCATTA
66 TTGCT-GCAGCAGGACCGACAGCACACA-AGGGGGACCGGGCCAG-TCCCT-GGCTTACGCATTA
** *
12737516 TGCCTCTCCGATCGACTCAAC-ACCCGAACGCT
127 TAACTCTCCGACCGACTCAACGA-CCGAACGCT
* * ** * *
12737548 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAGATCGAAACGGATTGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAAACGAATTGAGG
* * * *
12737612 GTTGCTGCAGTAGGATCGACAGCACGCAAGGGGGACCGGGCCAGTCCCTGGCTTACGCATTCTAA
65 GTTGCTGCAGCAGGACCGACAGCACACAAGGGGGACCGGGCCAGTCCCTGGCTTACGCATTATAA
* * * * *
12737677 CTCTCCGGCCGACTGAGCGACCGTACGTT
130 CTCTCCGACCGACTCAACGACCGAACGCT
*
12737706 CGTTTCGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12737754 AAACGGAGTT
Statistics
Matches: 170, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
158 89 0.52
159 80 0.47
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAACGAATTGAGGG
TTGCTGCAGCAGGACCGACAGCACACAAGGGGGACCGGGCCAGTCCCTGGCTTACGCATTATAAC
TCTCCGACCGACTCAACGACCGAACGCT
Found at i:12737725 original size:158 final size:158
Alignment explanation
Indices: 12737252--12737752 Score: 504
Period size: 159 Copynumber: 3.2 Consensus size: 158
12737242 CCCAATCTAA
* *
12737252 GCATACGGAGTTCATTCCCA-GTCTAAGATCGTACCGGATCGAGGGTTGC-GACAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGATTGAGGGTTGCTG-CAGTAGGATCGG
*
12737315 CAGCA-GC-AGGGGGAACCGGGCCGATCTCCAT--CTTGTGCATTCTACCTCTCCGACC-AGCTG
64 CAGCACGCAAGGGGG-ACCGGGCCGATC-CC-TGGCTTGCGCATTCTACCTCTCCGACCGA-CTG
* * * * *
12737375 AGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAA
125 AGCGACCGAACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * ** *
12737409 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAATTGAGGGTTG-TGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGATTGAGGGTTGCT-GCAGTAGGATCGGC
* * * * * * * *
12737473 AGCACACAGAGGGGGATCGGGTCGAT-CCTCGGCTTGCGCATTATGCCTCTCCGATCGACTCAAC
65 AGCACGCA-AGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTACCTCTCCGACCGACTGAGC
*
12737537 -ACCCGAACGCTCGTTTCGTGGGTTGACTTAG
128 GA-CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * *
12737568 GCATACGAAGTTCATTCC-TAGTCTAAGATCGAAACGGATTGAGGGTTGCTGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGAACCGGATTGAGGGTTGCTGCAGTAGGATCGGC
* * *
12737632 AGCACGCAAGGGGGACCGGGCC-AGTCCCTGGCTTACGCATTCTAACTCTCCGGCCGACTGAGCG
65 AGCACGCAAGGGGGACCGGGCCGA-TCCCTGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCG
* *
12737696 ACCGTACGTTCGTTTCGTGGGTTGGCTTAG
129 ACCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
12737726 GCATACGGAGATCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12737753 CAAACGGAGT
Statistics
Matches: 275, Mismatches: 52, Indels: 33
0.76 0.14 0.09
Matches are distributed among these distances:
156 4 0.01
157 54 0.20
158 91 0.33
159 118 0.43
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGATTGAGGGTTGCTGCAGTAGGATCGGCA
GCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGAC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12741400 original size:158 final size:159
Alignment explanation
Indices: 12741053--12741665 Score: 589
Period size: 159 Copynumber: 3.9 Consensus size: 159
12741043 CGAACACTCA
* * *
12741053 TTTCGTGGGTTGACTTAGGCATACGAAGTTTATTTCCAATCTAAGATCAGACCAGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTT
* ** * * * *
12741118 GCGGCAACAGGATCGACAGCACCCAAGGAGGGAAC-AGGCCGGT-CCCTGACTTGCGCATTCTAC
66 GCGGCAGCAGGATCGACAGCACCGTAGG-GGGGACTAGGCCGATCCCCAG-CTTGCGCATTCTGC
*
12741181 CTCTCCGATC-AGCTGAGCACCCGCATGCTCG
129 CTCTCCGATCGA-CTGAGCGCCCGCATGCTCG
12741212 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTT
* * *
12741277 GCGGCAGCAGGATCGACAGCA-TGTAGGGGGGACTAGGTCGGTCCCCAGCTTGCGCATTCTGCCT
66 GCGGCAGCAGGATCGACAGCACCGTAGGGGGGACTAGGCCGATCCCCAGCTTGCGCATTCTGCCT
* *
12741341 CTCCGATCGACTGAGCGCCAGCATGCCCG
131 CTCCGATCGACTGAGCGCCCGCATGCTCG
** * * * * * ** * *
12741370 TTTTATGGGTTGGCTTAGGAATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGT
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTAAGATCAAACCAGACCGAGGGT
* ** * * * ** * *
12741434 TGTGGCAGTGGGACCGATAGCA-CGCAGAGGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGC
65 TGCGGCAGCAGGATCGACAGCACCGTAG-GGGGGACTAGGCCGATCCCCAGCTTGCGCATTCTGC
* * * * * *
12741498 CTCTCC-AGCCGACTTAACGCCCGAACGCTCA
129 CTCTCCGA-TCGACTGAGCGCCCGCATGCTCG
* * * **
12741529 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACC-GAACTAAGGGT
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAG-ACCGAGGGT
* * * * * * *
12741593 TGCGGTAGCAGGATCGACAACA-CTTAGGGGGGACT-GAACCGATCCTCGGCTAGCGCATTCTGC
65 TGCGGCAGCAGGATCGACAGCACCGTAGGGGGGACTAG-GCCGATCCCCAGCTTGCGCATTCTGC
12741656 CTCTCCGATC
129 CTCTCCGATC
12741666 AGCCTTTCCG
Statistics
Matches: 367, Mismatches: 77, Indels: 21
0.79 0.17 0.05
Matches are distributed among these distances:
157 9 0.02
158 154 0.42
159 202 0.55
160 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (159 bp):
TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTT
GCGGCAGCAGGATCGACAGCACCGTAGGGGGGACTAGGCCGATCCCCAGCTTGCGCATTCTGCCT
CTCCGATCGACTGAGCGCCCGCATGCTCG
Found at i:12741747 original size:26 final size:26
Alignment explanation
Indices: 12741718--12741770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12741708 GTTGATTTAG
*
12741718 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
12741744 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12741770 G
1 G
12741771 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12742094 original size:26 final size:26
Alignment explanation
Indices: 12742060--12742112 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12742050 GTTGGCTTAG
*
12742060 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12742086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12742112 G
1 G
12742113 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12742821 original size:26 final size:26
Alignment explanation
Indices: 12742792--12742844 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12742782 GTTGACTTAG
12742792 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12742818 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12742844 G
1 G
12742845 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12743328 original size:26 final size:26
Alignment explanation
Indices: 12743291--12743343 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12743281 GTTGGCTTAG
12743291 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12743317 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12743343 G
1 G
12743344 ATTTTTAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12744023 original size:26 final size:26
Alignment explanation
Indices: 12743994--12744046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12743984 GTTGACTTAG
12743994 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12744020 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12744046 G
1 G
12744047 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12744521 original size:158 final size:156
Alignment explanation
Indices: 12744020--12744510 Score: 408
Period size: 158 Copynumber: 3.1 Consensus size: 156
12744010 CCCAGTCTAA
* * * * * * * *
12744020 GCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACTAAGGGTTGCAGAAACAAGATCAAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGAAGCAGGATCGAC
* * * * * * *
12744084 AGCACGCAGGATGGG-TCGGGTCGATCTCTGGCTTACACATTCTGCCTCTCCGGCTAGCTGAGCG
65 AGCATGCA-GAGGGGATC-GGTCGATCTTTGGCTTGCGCATTCTGCCTCTCCGCCGA-CTGAGCG
* *
12744148 CCCGTATGGCT-GTTTCATGGGTTGGCTTAG
127 CCCGCAT-GCTCATTTCATGGGTTGGCTTAG
* ** * * * *
12744178 GCATA-GGTAGTTCATT-CCATGTGTAAGCCCCA-ACCAGACCGAGGGTTGTGGCAGCGGGA-CT
1 GCATACGG-AGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGAAGCAGGATC-
* * * * * * * *
12744239 GACAGCATGCAGAGGGGGA-CTGGGCTGGTCCTCGACTTGTGCATTATGCCTAC-CCTGTC-AGC
62 GACAGCATGCAGA-GGGGATC-GGTC-GATCTTTGGCTTGCGCATTCTGCCT-CTCC-GCCGA-C
* * * **
12744301 TCAGCACCCGCACGCTCATTTCATGGGTTAACTTAG
121 TGAGCGCCCGCATGCTCATTTCATGGGTTGGCTTAG
* *
12744337 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGAAGCAGGATCGACA
12744402 GCATGCAGAGGGGATCGAGTCGATCTTTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCATGCAGAGGGGATCG-GTCGATCTTTGGCTTGCGCATTCTGCCTCTCCG-CCGACTGAGCGCC
12744467 CGCATGCTCATTTCATGGGTTGGCTTAG
129 CGCATGCTCATTTCATGGGTTGGCTTAG
12744495 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
12744511 TCATGTCTAA
Statistics
Matches: 256, Mismatches: 57, Indels: 40
0.73 0.16 0.11
Matches are distributed among these distances:
157 10 0.04
158 132 0.52
159 106 0.41
160 8 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGAAGCAGGATCGACA
GCATGCAGAGGGGATCGGTCGATCTTTGGCTTGCGCATTCTGCCTCTCCGCCGACTGAGCGCCCG
CATGCTCATTTCATGGGTTGGCTTAG
Found at i:12744912 original size:26 final size:26
Alignment explanation
Indices: 12744875--12744927 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12744865 GTTGACTTAG
*
12744875 GCATACAGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12744901 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
12744927 G
1 G
12744928 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12752369 original size:159 final size:158
Alignment explanation
Indices: 12752084--12752369 Score: 358
Period size: 159 Copynumber: 1.8 Consensus size: 158
12752074 GATCAGACCA
* *
12752084 GACCGAGGGTTGTCGCAACAGGATCGGCACCACGCATGGGGGACCGAGCCAATCCCCGACTTGCT
1 GACCGAGGGTTGTCGCAACAGGACCGGCACCACGCATGGGGGACCGAGCCAATCCCCGACTTGCA
* * * * * * *
12752149 CATTCTGCCTTTCCAGTCGGCTGAGTGCCCGCACGCCCATTTCGTATGTTGGCTTAGGCATAGGG
66 CATTATGCCTCTCCAGTCGGCTCAGCGCCCGCACGCCCATTTCGTAGGTTGACTTAAGCATAGGG
12752214 AGTCCATTCCATGTCTAAGCCCTAGCTG
131 AGTCCATTCCATGTCTAAGCCCTAGCTG
* * * * * * * *
12752242 GACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCA-GAAGGGGATCGGGCCGATCCTCGGCTTG
1 GACCGAGGGTTGTCGCAACAGGACCGGCACCACGCATG--GGGGACCGAGCCAATCCCCGACTTG
* * * *
12752306 CACATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATA
64 CACATTATGCCTCTCCAGTCGGCTCAGCGCCCGCACGCCCATTTCGTAGGTTGACTTAAGCATA
12752370 TGATGTTAAT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 32 0.30
159 72 0.69
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (158 bp):
GACCGAGGGTTGTCGCAACAGGACCGGCACCACGCATGGGGGACCGAGCCAATCCCCGACTTGCA
CATTATGCCTCTCCAGTCGGCTCAGCGCCCGCACGCCCATTTCGTAGGTTGACTTAAGCATAGGG
AGTCCATTCCATGTCTAAGCCCTAGCTG
Found at i:12753201 original size:159 final size:158
Alignment explanation
Indices: 12752867--12753386 Score: 487
Period size: 159 Copynumber: 3.3 Consensus size: 158
12752857 CAGCATCCGA
* * * *
12752867 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAA--TATCAGACCGG
1 ACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATT-CCATGTCTAAGCCAT-AG-CCGG
* *** ** * * * *
12752929 ACCGAGGGTAACGGCAGCAAGATCGTCAGCACGC-AGGGGGGACCAGGCT-GATCCCCAGCTTGC
63 ACCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCA--CTCGATCCCCAGCTTAC
* * ** * * ** * *
12752992 GCATTCTGCCT-TTCTGATCGGATGAGCGGCTAC
126 GCATTATGCCTCTAC-GGCCGGCTCAATGCCCAC
* * * * ** * * *
12753025 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCGTAGCCGGATC
1 ACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCATGTCTAAGCCATAGCCGGACC
* * *
12753090 GAAGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACC-CTCCTGATCCCCAGCTTATGCA
66 GAAGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCACT-C-GATCCCCAGCTTACGCA
*
12753154 TTATGCCTCTACGGCCGGCTCAGTGCCCAC
129 TTATGCCTCTACGGCCGGCTCAATGCCCAC
*
12753184 ACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCATGTCTAAGCCATAGCCGGACC
1 ACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCATGTCTAAGCCATAGCCGGACC
* ** * * *
12753249 GAGGGTTGTGGCAGCGGGACCGGTAGCACGCAAAGGGGGACCGAGTCGATCCCCGGCTTGCGCAT
66 GAAGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACC-ACTCGATCCCCAGCTTACGCAT
*
12753314 TATGCCTCTTCGGCCGGCTCAATGCCCAC
130 TATGCCTCTACGGCCGGCTCAATGCCCAC
* *
12753343 ACACTCATTTTATGGGTTGACTTATGCATACAGAGTTCATTCCA
1 ACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCA
12753387 ATCTAAGATC
Statistics
Matches: 297, Mismatches: 55, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 3 0.01
158 69 0.23
159 218 0.73
160 4 0.01
161 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
ACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCATGTCTAAGCCATAGCCGGACC
GAAGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCACTCGATCCCCAGCTTACGCATT
ATGCCTCTACGGCCGGCTCAATGCCCAC
Found at i:12754981 original size:26 final size:26
Alignment explanation
Indices: 12754945--12754997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12754935 GTTGACTTAG
*
12754945 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12754971 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12754997 G
1 G
12754998 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12755300 original size:26 final size:26
Alignment explanation
Indices: 12755270--12755322 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12755260 GTTGGCATAG
*
12755270 GCATAC-AGAGTTCATTCTATGTCTAA
1 GCATACGA-AGTTCATTCCATGTCTAA
12755296 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
12755322 G
1 G
12755323 ATCGAGTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:12756824 original size:26 final size:26
Alignment explanation
Indices: 12756795--12756847 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12756785 CTTGACTTAG
*
12756795 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12756821 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12756847 G
1 G
12756848 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12757294 original size:26 final size:26
Alignment explanation
Indices: 12757265--12757317 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12757255 GTTGGCTTAG
12757265 GCATACGGACTTCATTCCCTA-TCTAA
1 GCATACGGACTTCATTCCC-AGTCTAA
* * *
12757291 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
12757317 G
1 G
12757318 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:12758032 original size:26 final size:26
Alignment explanation
Indices: 12757996--12758048 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12757986 GTTGACTTAG
*
12757996 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12758022 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12758048 G
1 G
12758049 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12764161 original size:26 final size:26
Alignment explanation
Indices: 12764110--12764162 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12764100 GTTGGCTTAG
*
12764110 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
12764136 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
12764162 G
1 G
12764163 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:12764203 original size:12 final size:12
Alignment explanation
Indices: 12764186--12764215 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
12764176 GAGGGTTGCG
12764186 GCAGCAGGACTA
1 GCAGCAGGACTA
*
12764198 GCAGCAGGACTG
1 GCAGCAGGACTA
12764210 GCAGCA
1 GCAGCA
12764216 CGCAGGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.27, G:0.37, T:0.07
Consensus pattern (12 bp):
GCAGCAGGACTA
Found at i:12764543 original size:26 final size:26
Alignment explanation
Indices: 12764491--12764543 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12764481 GTTGACTTAG
*
12764491 GCATACAGAGTTCATGCCCAGTATAA
1 GCATACAGAGTTCATGCCCAATATAA
* *
12764517 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATGCCCAATATAA
12764543 G
1 G
12764544 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATGCCCAATATAA
Found at i:12765263 original size:188 final size:184
Alignment explanation
Indices: 12764946--12765311 Score: 450
Period size: 188 Copynumber: 2.0 Consensus size: 184
12764936 GTTGACTTAG
* * * * *
12764946 GCATACGGAGTTCATTACCAGTCAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGATAG
1 GCATACGGAGTTCATTACCAATCAAGATCAGAACGGATCGAGGGTTGCGACAGCAGGATCGATAA
* * * * *
12765011 CACGTAGGGGGGGATCGGGCCGATACGCGGCTTGCACATTCTGCCTTTTCAGCCGACTGAGCACC
66 CACGTAGGGGGGGACCGAGCCGATACCCGGCTTACACATTCTGCCTTCTCAGCCGACTGAGCACC
* *
12765076 CGAACACTTGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATATCAAA
131 CG--CAC--GCTCATTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCATATCAAA
* * **
12765134 GCATACGGAGTTTATTCCCAATCTAAGATC-GAACTGGATCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTACCAATC-AAGATCAGAAC-GGATCGAGGGTTGCGACAGCAGGATCGAT
* * * *
12765198 AACATGTA-GGGGGGACCGAGCCGATCCCCGGCTTACACATTCTGCC-TCTCTGGCCGGCTGAGC
64 AACACGTAGGGGGGGACCGAGCCGATACCCGGCTTACACATTCTGCCTTCTC-AGCCGACTGAGC
* *
12765261 ACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
128 ACCCGCACGCTCATTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCAT
12765312 GTCTAAGCCC
Statistics
Matches: 153, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
184 40 0.26
186 2 0.01
187 3 0.02
188 71 0.46
189 37 0.24
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTACCAATCAAGATCAGAACGGATCGAGGGTTGCGACAGCAGGATCGATAA
CACGTAGGGGGGGACCGAGCCGATACCCGGCTTACACATTCTGCCTTCTCAGCCGACTGAGCACC
CGCACGCTCATTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCATATCAAA
Found at i:12765500 original size:26 final size:26
Alignment explanation
Indices: 12765463--12765515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12765453 GTTGACTTAG
*
12765463 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12765489 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12765515 G
1 G
12765516 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12765795 original size:344 final size:348
Alignment explanation
Indices: 12765019--12765833 Score: 856
Period size: 356 Copynumber: 2.3 Consensus size: 348
12765009 AGCACGTAGG
* * * * * * *
12765019 GGGGGATCGGGCCGATACGCGGCTTGCACATTCTGCCTTTTC-AGCCGACTGAGCACCCGAACAC
1 GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGA-CCGACTCAGCACCCG--CAC
* * * * * * * *
12765083 TTGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATATCAAAGCATACGGAGTTTA
63 --GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGAAGTTCA
* ** * * *
12765148 TTCCCAATCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAGGATCGATAACATGTAGGGGGGA
125 TTCCCAATCTAAGATCGAACTGGATCAAGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGA
* * * * * * *
12765213 CCGAGCCGATCCCCGGCTTACACATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCTCATTTC
190 CCGAGCCAATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCCGAGCACCCGCACGCCCATTTC
* **
12765278 ATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCTGACCGAGGGTTGCGA
255 ATGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAAACCGAGGGTT-CGA
* ***
12765343 TGGTAGGACTGGTAGCGGGATCGACAGCATGTAGA
319 TGGTAGGAC--G-A--GGGACCGACAGCACACAGA
* * * ** *
12765378 GGGGGACCGGGCTGATCCCCGGTTTGCACATTATGCCTCTCCGATCGGTTGAGCACCCGCACGCT
1 GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCACCCGCACGCT
* *
12765443 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCGC
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGAAGTTCATTCCC
* * * * *
12765508 AGTCTAAGATCAGATC-GGA-CTAAGGGTTGCGACAGCAGGATTGACAGCACGCAGGGGGGAACT
130 AATCTAAGATC-GAACTGGATC-AAGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGG-ACC
* * * * **
12765571 GGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCCGAGTGCCCGCACGCCCATTTCAT
192 GAGCCAATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCCGAGCACCCGCACGCCCATTTCAT
** *
12765636 GGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAAACTGAGGGTT-G-TGG
257 GGGTTGGCTTAAGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAAACCGAGGGTTCGATGG
12765699 TA-G-C-A-GGACCGACAGCACACAGA
322 TAGGACGAGGGACCGACAGCACACAGA
* * * *
12765722 GGGGGACCTGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCTACTCAGCACCCGCACGCT
1 GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCACCCGCACGCT
*
12765787 CGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
12765834 ATCAGATCGG
Statistics
Matches: 383, Mismatches: 67, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
344 112 0.29
345 1 0.00
347 1 0.00
351 1 0.00
352 1 0.00
353 5 0.01
354 2 0.01
355 97 0.25
356 113 0.30
357 3 0.01
359 46 0.12
360 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (348 bp):
GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGAAGTTCATTCCCA
ATCTAAGATCGAACTGGATCAAGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGACCGAGC
CAATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCCGAGCACCCGCACGCCCATTTCATGGGT
TGGCTTAAGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAAACCGAGGGTTCGATGGTAGG
ACGAGGGACCGACAGCACACAGA
Found at i:12765994 original size:159 final size:158
Alignment explanation
Indices: 12765486--12765994 Score: 567
Period size: 159 Copynumber: 3.2 Consensus size: 158
12765476 ATCCCCAGTC
* * * * *
12765486 TAAGCATACGAAGTTCATTCGCAGTCTAAGATCAGATCGGACTAAGGGTTGCGACAGCAGGATTG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCG
* ** * * * * * *
12765551 ACAGCACGCAGGGGGGAACTGGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCCGAG
66 ACAGCACACAGGGGGG-ACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAG
** * * * *
12765616 TGCCCGCACGCCCATTTCATGGGTTGGCT
130 CACCCGCACGCTCGTTTCGTGGGTTGACT
* ** ** * * *
12765645 TAAGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAAACTGAGGGTTGTGGTAGCAGGAC
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGCGGCAGCAGGAT
* * *
12765708 CGACAGCACACAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCT-ACT
64 CGACAGCACACAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACTGACT
*
12765772 CAGCACCCGCACGCTCGTTTCGTGGGTTGACT
127 GAGCACCCGCACGCTCGTTTCGTGGGTTGACT
* *
12765804 TATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCG
* * *
12765869 ACAGCACACATGGGGGGACCAAGCTGATCCCCGGCTTGCGTATTCTGCCTCTCC-AGCTGACTGA
66 ACAGCACACA-GGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CTGACTGA
*
12765933 GCACCCGCACGCTCGTTTCGTGGGTTGCCT
129 GCACCCGCACGCTCGTTTCGTGGGTTGACT
* *
12765963 TAGGCATACAGAGTTCATTCCCAGTCTAAGAT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT
12765995 TTTGAGTGAC
Statistics
Matches: 290, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
158 7 0.02
159 269 0.93
160 14 0.05
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (158 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCG
ACAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGC
ACCCGCACGCTCGTTTCGTGGGTTGACT
Found at i:12766700 original size:26 final size:26
Alignment explanation
Indices: 12766664--12766716 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12766654 GTTGACTTAG
12766664 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12766690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12766716 G
1 G
12766717 ATCAGATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12767217 original size:158 final size:157
Alignment explanation
Indices: 12766827--12767229 Score: 429
Period size: 158 Copynumber: 2.5 Consensus size: 157
12766817 CTCGCATGCC
* * *
12766827 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGACCGAGGG
* ** * *
12766892 TTTTGCAGCGGGACCGACAGCACGCAAAAGGGGATCAGGTCGATCCCCGACTTGCACATTATGCC
65 TTTAGCAGTAGGATCGACAGCACACAAAAGGGGATCAGGTCGATCCCCGACTTGCACATTATGCC
** * **
12766957 TCTCCGATTGGCTCAATGCCTGAACGCT
130 TCTCCGACCGGCTCAACGCCCCAACGCT
* **
12766985 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CC-GACCGAG
* * ** ** *
12767048 CGTTACAGCAGTAGGATCGACAGCACAC-AGGGGGGATC-GAGTCGATCCCCGGTTTGCACATTC
63 GGTT-TAGCAGTAGGATCGACAGCACACAAAAGGGGATCAG-GTCGATCCCCGACTTGCACATTA
* *
12767111 TGCCTCTCCGACCGG-TCGAGCGCCCCCACGCT
126 TGCCTCTCCGACCGGCTC-AACGCCCCAACGCT
* *
12767143 CGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGTACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG-ACCGAGGG
* *
12767208 TTGTGGCAGTAGGATCGGCAGC
65 TT-TAGCAGTAGGATCGACAGC
12767230 GGGGTCGGTA
Statistics
Matches: 201, Mismatches: 36, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
157 9 0.04
158 171 0.85
159 21 0.10
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGACCGAGGGT
TTAGCAGTAGGATCGACAGCACACAAAAGGGGATCAGGTCGATCCCCGACTTGCACATTATGCCT
CTCCGACCGGCTCAACGCCCCAACGCT
Found at i:12767383 original size:26 final size:26
Alignment explanation
Indices: 12767347--12767425 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12767337 GTTGACTTAG
* *
12767347 GCATACAGAGTGCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12767373 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12767399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12767425 G
1 G
12767426 ATCGGATCAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12768113 original size:26 final size:26
Alignment explanation
Indices: 12768083--12768135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12768073 GTTGACTTAG
12768083 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
12768109 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12768135 G
1 G
12768136 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12768620 original size:26 final size:26
Alignment explanation
Indices: 12768584--12768636 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12768574 GTTGGCTTAG
12768584 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
12768610 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
12768636 G
1 G
12768637 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:12768948 original size:26 final size:26
Alignment explanation
Indices: 12768910--12768965 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12768900 TGAGTTGACT
12768910 TAAGCATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACGGAGTTCATTCCC-AGTC
*
12768936 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12768962 TAAG
1 TAAG
12768966 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12769255 original size:158 final size:159
Alignment explanation
Indices: 12768946--12769282 Score: 383
Period size: 158 Copynumber: 2.1 Consensus size: 159
12768936 TAAGCATATG
* ** *
12768946 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCATTACGGTAGCGGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGCATTACGGTAGCAAGATCGACAGCATACA
* * *** * * *
12769011 GAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTTAACGCCTGAATG
66 GAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGACTGAACGCCCGAACG
*
12769076 CTCGTTTCGTGGGTTGACTTAGGCATACA
131 CTCATTTCGTGGGTTGACTTAGGCATACA
* ** ** *
12769105 GAGTTCATTCCCAGTCTCAGATC-GAACCGAATCGAGGGTTGTGGTGGCAAGATCGACAGCATAC
1 GAGTTCATTCCCAGTCTAAGATCAG-ACCGAATCGAGCATTACGGTAGCAAGATCGACAGCATAC
* * * * * * *
12769169 AG-GGGGGACCGGGCCGGTCCCCGGTTTGGGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCAC
65 AGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGACTGAACGCCCGAAC
* *
12769233 GCTCATTTCGTGGGTTGGCTTAGGCATACG
130 GCTCATTTCGTGGGTTGACTTAGGCATACA
12769263 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
12769283 CATACAGAGT
Statistics
Matches: 147, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.02
158 90 0.61
159 54 0.37
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGCATTACGGTAGCAAGATCGACAGCATACA
GAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGACTGAACGCCCGAACG
CTCATTTCGTGGGTTGACTTAGGCATACA
Found at i:12770726 original size:158 final size:156
Alignment explanation
Indices: 12770522--12770936 Score: 413
Period size: 158 Copynumber: 2.6 Consensus size: 156
12770512 GATCAAGTCG
** *
12770522 ATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGTTAAGTGCCCGCACACCCGTTTCATGGGTTG
1 ATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGG-CGAGCG-CCGCACACCCGTTTCATGGGTTG
* * * * *
12770587 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCA-AGTCGGACCGAGGGTTATGGCAGTGGG
64 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGA-TCGGACCGAGGGTTACGACAATAGG
** * *
12770651 ACCGGTAACATACAGAGGGGATCGGGCCA
128 ACCGACAACACACAGAGGGGACCGGGCCA
* * * *
12770680 ATCCCCGGCTTGCACATTATGCCTCTTCGGCCAGCGCAGCGTCCGCACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCG-AGCG-CCGCACACCCGTTTCATGGGTTG
* * * ** * * *
12770745 ACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCGATAATAGG
64 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGATCGGACCGAGGGTTACGACAATAGG
* * * *
12770809 ATCGACAGCACATAGGGGGGACCGGGCCA
128 ACCGACAACACACAGAGGGGACCGGGCCA
* * * * *
12770838 ATCCTCGACTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGCC-CACACGCTCGTTTCGTGGGTT
1 ATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGC-GAGCGCCGCACAC-C-CGTTTCATGGGTT
* *
12770902 GGCTTAGGCATATGGAGTTCATTCGATGTCTAAGC
63 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12770937 ATACGGAGTT
Statistics
Matches: 206, Mismatches: 44, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.02
157 4 0.02
158 193 0.94
159 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (156 bp):
ATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCGAGCGCCGCACACCCGTTTCATGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGATCGGACCGAGGGTTACGACAATAGGACC
GACAACACACAGAGGGGACCGGGCCA
Found at i:12770958 original size:26 final size:26
Alignment explanation
Indices: 12770909--12770961 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12770899 GTTGGCTTAG
* *
12770909 GCATATGGAGTTCATTCGATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12770935 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
12770961 G
1 G
12770962 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12777846 original size:158 final size:158
Alignment explanation
Indices: 12777510--12777874 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 158
12777500 CCTGCACACC
* * *
12777510 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGACAGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ACCAGTCGGACAGAGGG
** * ** ** * * *
12777575 TTGTGGTAGCGGGACCGTCAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGTGCATTATGC
65 TTGTGACAGCAGGACCAACAGCACGCAGAGGGGGACCAAGCCGATCATCGGCTTGTGCATTATAC
* * *
12777640 CTCTCCGGTCAACTCAGTGCCCGTACGCT
130 CTCTCCAGCCAACTCAGTGCCCGCACGCT
* ** * *
12777669 CATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAG-TCGGACAGAGGG
* * * * * *
12777734 TTGTGACAGCAGGATCAACAGCACGTAG-GGGGGATCAAGCCGATTATGGGCTTGTGCATTCTAC
65 TTGTGACAGCAGGACCAACAGCACGCAGAGGGGGACCAAGCCGATCATCGGCTTGTGCATTATAC
* * * *
12777798 CTCTCTAGCCGACTGAGTGCCTGCACGCT
130 CTCTCCAGCCAACTCAGTGCCCGCACGCT
**
12777827 GGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCT-GTCTAAGA
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGA
12777875 ATAGGAGTTC
Statistics
Matches: 168, Mismatches: 36, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
158 91 0.54
159 77 0.46
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (158 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGTCGGACAGAGGGT
TGTGACAGCAGGACCAACAGCACGCAGAGGGGGACCAAGCCGATCATCGGCTTGTGCATTATACC
TCTCCAGCCAACTCAGTGCCCGCACGCT
Found at i:12778253 original size:26 final size:26
Alignment explanation
Indices: 12778224--12778274 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12778214 TTGACTTAGG
*
12778224 CATACGAAGTTCATCCCCAATCTAAC
1 CATACAAAGTTCATCCCCAATCTAAC
*
12778250 CATACAAAGTTCATTCCCAATCTAA
1 CATACAAAGTTCATCCCCAATCTAA
12778275 GATTGGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.37, C:0.31, G:0.06, T:0.25
Consensus pattern (26 bp):
CATACAAAGTTCATCCCCAATCTAAC
Found at i:12779116 original size:26 final size:26
Alignment explanation
Indices: 12779087--12779139 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12779077 GTTGGCTTAG
12779087 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12779113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12779139 G
1 G
12779140 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12779650 original size:159 final size:158
Alignment explanation
Indices: 12779458--12779824 Score: 432
Period size: 158 Copynumber: 2.3 Consensus size: 158
12779448 GCACCCACAT
* * *
12779458 GCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAA-ACCCCAGCTGGACTG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCAGC-GGACTG
** * *
12779522 AGGGTTGTGGCAGTGGGACCGACAGCATGCAGAGGGGGACCGAGCCGATCCCTAGCTTACGCATT
65 AGGGTTGTGGCAGCAGGACCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCAGCTTACGCATT
*
12779587 ATGCCTCTCCAACCGACTCAGAACCCGCAC
129 ATACCTCTCCAACCGACTCAGAACCCGCAC
* * * ** *
12779617 TCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCCAGCGGACTG
* ** * * * * ** *
12779681 AGGGTTGTGGTAGCAGGATTGATAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTC
65 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACGCATTA
* * *
12779746 TACCTCTCCGACCGACTGAGCACCCGCAC
130 TACCTCTCCAACCGACTCAGAACCCGCAC
* *
12779775 GCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
12779825 CATACGGAGT
Statistics
Matches: 175, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
157 3 0.02
158 93 0.53
159 72 0.41
160 7 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCAGCGGACTGA
GGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACGCATTAT
ACCTCTCCAACCGACTCAGAACCCGCAC
Found at i:12779789 original size:158 final size:157
Alignment explanation
Indices: 12779326--12779824 Score: 518
Period size: 159 Copynumber: 3.1 Consensus size: 157
12779316 GTCTAAGCAC
* * *
12779326 ACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCCGAGGGTTGCGGCAATAGGATTGACAGC
1 ACGGAGTTCATT-CCATGTCTAAGATCGGACCGGA-CTGAGGGTTGTGGCAGTAGGATTGACAGC
* ** * * * ** * *
12779390 ACACAAAGGTGACTGGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCACCCA
64 ACGCAGGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCG
* *
12779455 CATGCTCGTTTCGTGGGTTGGCTTAGGCAT
128 CACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * ** * * **
12779485 AGGGAGTTCATTCCATGACTAA-ACCCCAGCTGGACTGAGGGTTGTGGCAGTGGGACCGACAGCA
1 ACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACTGAGGGTTGTGGCAGTAGGATTGACAGCA
* * ** * * * * * *
12779549 TGCAGAGGGGGACCGAGCCGATCCCTAGCTTACGCATTATGCCTCTCCAACCGACTCAGAACCCG
65 CGCAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCG
*
12779614 CACTCTCGTTTCGTGGGTTGACTTAGGCAT
128 CACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
12779644 ATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGTGGTAGCAGGATTGATAGCA
1 ACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGTAGGATTGACAGCA
*
12779708 CGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGACTGAGCACCCGC
65 CGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGC
* *
12779773 ACGCTCGTTTCATGGGTTGCCTTAGGCAT
129 ACGCTCGTTTCGTGGGTTGACTTAGGCAT
12779802 ACGGAGTTCATTCCATGTCTAAG
1 ACGGAGTTCATTCCATGTCTAAG
12779825 CATACGGAGT
Statistics
Matches: 269, Mismatches: 64, Indels: 15
0.77 0.18 0.04
Matches are distributed among these distances:
157 3 0.01
158 125 0.46
159 134 0.50
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
ACGGAGTTCATTCCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGTAGGATTGACAGCAC
GCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCAT
Found at i:12779844 original size:23 final size:25
Alignment explanation
Indices: 12779798--12779847 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
12779788 GTTGCCTTAG
*
12779798 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTT-ATCCCATGTCTAA
12779824 GCATACGGAGTT-TCCCA-GTCTAA
1 GCATACGGAGTTATCCCATGTCTAA
12779847 G
1 G
12779848 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 7 0.30
24 4 0.17
26 12 0.52
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTATCCCATGTCTAA
Found at i:12780179 original size:196 final size:191
Alignment explanation
Indices: 12779704--12780212 Score: 617
Period size: 196 Copynumber: 2.6 Consensus size: 191
12779694 CAGGATTGAT
* * *
12779704 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGACTGAGCAC
1 AGCACGCAGGGGGGATCGGG-TGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGC
* *
12779769 CCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
65 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
* ** * * * *
12779834 TTTCCCAGTCTAAGATCAGACTGGACGAGGGTTACGGTATTAGGACCAGCAGCAGGATCGAT
130 TTTCCCAGTCTAAGATCAGACAGGACGAGGGTTACGGTAGCAAGACAAGCAGCAAGATCGAC
* * * ** * * *
12779896 AGCACGCAGGGGGGACCGAGCTGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCTG-TTGAGCG
1 AGCACGCAGGGGGGATCG-GGTGATCCCCGGCTTGTGCATTCTGCCTCTCC-GACCGACTGAGCG
* * *
12779960 CTCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTACGCATACAGA
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* *
12780025 GTTCATTCCTAGTCTAAGATCAGACAGGACCGAGGGTTGCGGTAGCAAGACAAGCAGCAAGAGT-
129 G-T--TTCCCAGTCTAAGATCAGACAGGA-CGAGGGTTACGGTAGCAAGACAAGCAGCAAGA-TC
*
12780089 GGC
189 GAC
* *
12780092 AGCAAGCAAGGGGGATCGGGTAGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGC
1 AGCACGCAGGGGGGATCGGGT-GATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGC
* * * * **
12780157 CCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATAGGGCGTTCATTCTGTGTCTAAG
65 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
12780213 TCCCAGCCAG
Statistics
Matches: 263, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
192 108 0.41
193 5 0.02
195 27 0.10
196 122 0.46
197 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (191 bp):
AGCACGCAGGGGGGATCGGGTGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGT
TTCCCAGTCTAAGATCAGACAGGACGAGGGTTACGGTAGCAAGACAAGCAGCAAGATCGAC
Found at i:12780294 original size:705 final size:702
Alignment explanation
Indices: 12778898--12780554 Score: 1752
Period size: 705 Copynumber: 2.3 Consensus size: 702
12778888 CGGTTGAGCG
* * * * *
12778898 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCTCTAGTCTAAGATCAGAC
1 CCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTC-CCAGTCTAAGATCGGAC
* * * ** * * * *
12778962 CAGACCAAGGGTTGCGCCAGTAGGATCGATAGCACACAGGGGGGGATCGGGCAGATACCCGACTT
65 CGGACCGAGGGTTGTGAAAGCAGGATCGATAGCACGCA-GGGGGGATCGGGCAGATCCCCGGCTT
* * * * * *
12779027 ACGCATTCTGCCTCTCCGATTGGTTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATA
129 GCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
*
12779092 CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
194 CGGAGTTCATTCCATGTCTAAGCATACGGAGTT-ATTCCCAGTCTAAGATCAGACCAGACCGAGG
** *
12779157 GTTGTAACAGCAGGACCAGCAGCAGGATCGACAGCACAAAGGGGGGATCGGACTGATCCTCGGCT
258 GTTACAACAGCAGGACCAGCAGCAGGATCGACAGCACAAAGGGGGGACCGGACTGATCCTCGGCT
* * * * *
12779222 TGCACTTTTTGCCTCTCCAATCGGCCTTTCCGATCGGCTGAGCGCCCATACGCTTATTTAATGGG
323 TACACATTCTGCCTCTCC-A-CGGCCTTT-CGAGCGGCT--GCGCACATACG--T-TTTAATGGG
* *
12779287 TTGATTTAGGCATACAGAGTTCATCCCCAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAGATC
380 TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCACACAGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
12779352 GGACCGGACCCGAGGGTTGCGGCAATAGGATTGACAGCACACAAAGGTGACTGGGCCGATCCTCG
445 AGACAGGACCCGAGGGTTGCGGCAACAGGAGTGACAGCACACAAAGGGGACTGGGCAGATCCCCG
** * * *
12779417 GCTTGCACATTCTACCTCTCCGGTCGGCTGAGCACCCACATGCTCGTTTCGTGGGTTGGCTTAGG
510 GCTTGCACATTCTACCTCTCCGACCGACTGAGCACCCACACGCTCGTTCCGTGGGTTGGCTTAGG
** * * *
12779482 CATAGGGAGTTCATTCCATGACTAAACCCCAGCTGGACTGAGGGTTGTGGCAGTGGGACCGACAG
575 CATAGGGAGTTCATTCCATGACTAAACCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCAACAG
* * * *
12779547 CATGCAGAGGGGGACCGAGCCGATCCCTAGCTTACGCATTATGCCTCTCCAACCGACTCAGAA
640 CACGCAGAGGGGGACAGAGCCGATCCCGAGCTTACACATTATGCCTCTCCAACCGACTCAGAA
*
12779610 CCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC
1 CCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * * *
12779675 GGACTGAGGGTTGTGGTAGCAGGATTGATAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGT
66 GGACCGAGGGTTGTGAAAGCAGGATCGATAGCACGCAGGGGGGATCGGGCAGATCCCCGGCTTGC
* * * * * *
12779740 GCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACG
131 GCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
**
12779805 GAGTTCATTCCATGTCTAAGCATACGGAG-T-TTCCCAGTCTAAGATCAGACTGGA-CGAGGGTT
196 GAGTTCATTCCATGTCTAAGCATACGGAGTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
*** ** * **
12779867 ACGGTATTAGGACCAGCAGCAGGATCGATAGCACGCAGGGGGGACC-GAGCTGATCCTCGGCTTA
261 ACAACAGCAGGACCAGCAGCAGGATCGACAGCACAAAGGGGGGACCGGA-CTGATCCTCGGCTTA
* * * *
12779931 CGCATTCTGCCTCT-C-CGGTCTGTT-GAGC-GCT-CGCACACT-CG-TTTCATGGGTTGGCTTA
325 CACATTCTGCCTCTCCACGGCCT-TTCGAGCGGCTGCGCACA-TACGTTTTAATGGGTTGACTTA
* * * * *
12779989 GGCATACGGAGTTCAT-TCCATGTCTACGCATACAGAGTTCATTCCTAGTCTAAGATCAGACAGG
388 GGCATACAGAGTTCATCCCCA-GTCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCAGACAGG
* * *
12780053 A-CCGAGGGTTGCGGTAGCAAGACAAGCAGCAAGAGTGGCAGCA-AGCAAGGGGGA-TCGGGTAG
452 ACCCGAGGGTTGC----G---G-CAA-CAG---GAGTGACAGCACA-CAAAGGGGACT-GGGCAG
** * * *
12780115 ATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTCCGTGGGTTG
503 ATCCCCGGCTTGCACATTCTACCTCTCCGACCGACTGAGCACCCACACGCTCGTTCCGTGGGTTG
* ** * **
12780180 GCTTAGGCATAGGGCGTTCATTCTGTGTCTAAGTCCCAGCCAGACCGAGGGTTGT-GCAAGCGGG
568 GCTTAGGCATAGGGAGTTCATTCCATGACTAAACCCCAGCCAGACCGAGGGTTGTGGC-AGCGGG
* * * * ****
12780244 ACCAATAGCACGTAGAGGGGGACTAG-GCCGATCCCCGA-CTTGCACATTATGCCTCTTCGGTTG
632 ACCAACAGCACGCAGAGGGGGAC-AGAGCCGAT-CCCGAGCTTACACATTATGCCTCTCCAACCG
* *
12780307 GCTCAGGA
695 ACTCAGAA
* * * *
12780315 CCTGCAAAT-GCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
1 CCCGC-ACTCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * **
12780379 CGGACCGAGGGTTGTGAAAGCAGGATCGGTAGCACGTAGGGGGGATCAGGCTGATCCTTGGCTTG
65 CGGACCGAGGGTTGTGAAAGCAGGATCGATAGCACGCAGGGGGGATCGGGCAGATCCCCGGCTTG
* * * *
12780444 CACATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATAT
130 CGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* *
12780509 GGAATTCATTCCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAA
195 GGAGTTCATTCCATGTCTAAGCATACGGAGTT-ATTCCCAGTCTAA
12780555 AATTTTGAGC
Statistics
Matches: 785, Mismatches: 134, Indels: 56
0.81 0.14 0.06
Matches are distributed among these distances:
693 14 0.02
694 67 0.09
697 1 0.00
698 7 0.01
699 1 0.00
700 1 0.00
701 6 0.01
702 5 0.01
703 5 0.01
704 6 0.01
705 367 0.47
706 11 0.01
707 68 0.09
708 33 0.04
710 1 0.00
711 106 0.14
712 84 0.11
713 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (702 bp):
CCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC
GGACCGAGGGTTGTGAAAGCAGGATCGATAGCACGCAGGGGGGATCGGGCAGATCCCCGGCTTGC
GCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGGAGTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
ACAACAGCAGGACCAGCAGCAGGATCGACAGCACAAAGGGGGGACCGGACTGATCCTCGGCTTAC
ACATTCTGCCTCTCCACGGCCTTTCGAGCGGCTGCGCACATACGTTTTAATGGGTTGACTTAGGC
ATACAGAGTTCATCCCCAGTCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCC
GAGGGTTGCGGCAACAGGAGTGACAGCACACAAAGGGGACTGGGCAGATCCCCGGCTTGCACATT
CTACCTCTCCGACCGACTGAGCACCCACACGCTCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTT
CATTCCATGACTAAACCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAGGG
GGACAGAGCCGATCCCGAGCTTACACATTATGCCTCTCCAACCGACTCAGAA
Found at i:12780389 original size:159 final size:157
Alignment explanation
Indices: 12780222--12780520 Score: 359
Period size: 158 Copynumber: 1.9 Consensus size: 157
12780212 GTCCCAGCCA
* *
12780222 GACCGAGGGTTGTGCAAGCGGGACCAATAGCACGTAGAGGGGGA-CTAGGCCGATCCCCGACTTG
1 GACCGAGGGTTGTGAAAGCAGGACCAATAGCACGTAG-GGGGGATC-AGGCCGATCCCCGACTTG
* * * * * *
12780286 CACATTATGCCTCTTCGGTTGGCTCAGGACCTGCAAATG-CGTTTCGTGGGTTGACTTATGCATA
64 CACATTATGCCTCTCCGGTCGGCTCAGCACC--CAAACGCCATTTCGTGGGTTGACTTAGGCATA
*
12780350 TGGAGTTCATTCCCAGTCTAAGATCGGACCG
127 TGGAATTCATTCCCAGTCTAAGATCGGACCG
* ** * ** *
12780381 GACCGAGGGTTGTGAAAGCAGGATCGGTAGCACGTAGGGGGGATCAGGCTGATCCTTGGCTTGCA
1 GACCGAGGGTTGTGAAAGCAGGACCAATAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGCA
* * * *
12780446 CATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATATGG
66 CATTATGCCTCTCCGGTCGGCTCAGCACCCAAACGC-CATTTCGTGGGTTGACTTAGGCATATGG
12780511 AATTCATTCC
130 AATTCATTCC
12780521 ATGTTTAAGC
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
156 4 0.03
158 80 0.68
159 33 0.28
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
GACCGAGGGTTGTGAAAGCAGGACCAATAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGCA
CATTATGCCTCTCCGGTCGGCTCAGCACCCAAACGCCATTTCGTGGGTTGACTTAGGCATATGGA
ATTCATTCCCAGTCTAAGATCGGACCG
Found at i:12780507 original size:158 final size:159
Alignment explanation
Indices: 12780114--12780520 Score: 410
Period size: 159 Copynumber: 2.6 Consensus size: 159
12780104 GGATCGGGTA
* ** ** * * * *
12780114 GATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTCCGTGGGTT
1 GATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCTCGTTTCGTGGGTT
* * *** * *
12780179 GGCTTAGGCATAGGGCGTTCATTCTGTGTCTAAGTCCCAGCCAGACCGAGGGTTGTGCAAGCGGG
66 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGTCCCAGCCAGACCGAGGGTTGTGAAAGCAGG
12780244 ACCAATAGCACGTAGAGGGGGACTAGGCC
131 ACCAATAGCACGTAGAGGGGGACTAGGCC
* * * * * * *
12780273 GATCCCCGACTTGCACATTATGCCTCTTCGGTTGGCTCAGGACCTGCAAATG--CGTTTCGTGGG
1 GATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACC--CACACGCTCGTTTCGTGGG
* * ** *
12780336 TTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGTGAAAGC
64 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG-TCCCAGCCAGACCGAGGGTTGTGAAAGC
* ** *
12780400 AGGATCGGTAGCACGTAG-GGGGGA-TCAGGCT
128 AGGACCAATAGCACGTAGAGGGGGACT-AGGCC
** * *
12780431 GATCCTTGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCTCATTTCGTGGGTT
1 GATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCTCGTTTCGTGGGTT
*
12780496 GGCTTAGGCATATGGAATTCATTCC
66 GGCTTAGGCATATGGAGTTCATTCC
12780521 ATGTTTAAGC
Statistics
Matches: 196, Mismatches: 46, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
156 4 0.02
157 1 0.01
158 80 0.41
159 105 0.54
160 3 0.02
161 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
GATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCTCGTTTCGTGGGTT
GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGTCCCAGCCAGACCGAGGGTTGTGAAAGCAGG
ACCAATAGCACGTAGAGGGGGACTAGGCC
Found at i:12781577 original size:26 final size:26
Alignment explanation
Indices: 12781541--12781594 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
12781531 GGTTGGCTTT
12781541 AGCATACGGAGTTCATT-CCATGTCTA
1 AGCATACGGAGTTCATTCCCA-GTCTA
12781567 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
12781593 AG
1 AG
12781595 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:12781928 original size:26 final size:26
Alignment explanation
Indices: 12781898--12781950 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12781888 GTTGGCTTAG
12781898 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12781924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12781950 G
1 G
12781951 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12782074 original size:184 final size:191
Alignment explanation
Indices: 12781835--12782306 Score: 553
Period size: 184 Copynumber: 2.5 Consensus size: 191
12781825 TGATCCTCGG
* * **
12781835 CTTACGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGC
1 CTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
*
12781900 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCA
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCA
* * *** *
12781965 AGGG-T-T-G-AGG-TA-A-CAGGATCAACAGCACGCAGGGGATATTGGGTCAATCCCTGA
131 AGGGTTGTAGCAGGACACAGCAGGATCAACAGCACGCAGGGGAGACCAGGTCAATCCCCGA
* * *
12782019 CTTATGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGC
1 CTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* * * * * ***
12782084 ATACAGAGTTTATTCCATGTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATCGAACCGGATTG
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCA
* * *
12782149 AGGGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCG
131 AGGGTT---GTAGCAGGA-CA-CAGCAGGATCAACAGCACGCAGGGGAGACCAGGTCAATCCCCG
12782214 A
191 A
* * * * * *
12782215 CTTGCGCATTCTACCTCTCCGACTGGCTGAGCCGCCCGCACTCCCATTTCGTGGGTTGGCTTAGG
1 CTTACGCATTCTGCCTCTCCGACCGGCTGAG-CGCCCGCACGCTCATTTCATGGGTTGGCTTAGG
*
12782280 CATAGGGAGTTCATTCCATGTCTAAGC
65 CATACGGAGTTCATTCCATGTCTAAGC
12782307 CCCAGCCGGA
Statistics
Matches: 238, Mismatches: 37, Indels: 13
0.83 0.13 0.05
Matches are distributed among these distances:
184 118 0.50
185 1 0.00
189 1 0.00
190 1 0.00
191 3 0.01
193 1 0.00
195 1 0.00
196 59 0.25
197 53 0.22
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (191 bp):
CTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCA
AGGGTTGTAGCAGGACACAGCAGGATCAACAGCACGCAGGGGAGACCAGGTCAATCCCCGA
Found at i:12782118 original size:26 final size:26
Alignment explanation
Indices: 12782082--12782134 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12782072 GTTGGCTTAG
*
12782082 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12782108 GCATTCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12782134 G
1 G
12782135 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12782431 original size:540 final size:532
Alignment explanation
Indices: 12781384--12782464 Score: 1261
Period size: 540 Copynumber: 2.0 Consensus size: 532
12781374 GTTGACTTAG
* * * * *
12781384 GCATACGGAGTTCATTCCCAGTCTACGATCGAACCAGACCGAGGGTTGTGACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGAGACAACAGGATCAACA
* * * *
12781449 GCATGCAGGAAGGGCTGAGTCGATCCCCGACTTATGCATTCTACCTCTCCGAGCGGCTGAGCGCC
66 GCACGCAGG-AGGACTGAGTCAATCCCCGACTTATGCATTCTACCTCTCCGAGCGGCTGAGCACC
* * * * * * *
12781514 TGTACACTCGTTTCGTTGGTTGGCTTTAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
130 CGCACACTCATTTCATGGGTTGGCTTTAGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGT
*
12781579 TCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGGTAGCAGGATCGACAGGACGCAGGGG
195 TCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGGTAGCAGGACCGACAGGACGCAGGGG
* * * * * * *
12781644 GGTACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGTACGCTCG
260 GGGACCAAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCA
* * *
12781709 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTT
325 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * * *
12781774 TTGGCAATAGGACCGACAACGGGATCAGCAGCACGTAGAGGGGGATCGAGCTGATCCTCGGCTTA
390 GTGGCAATAGG--CGAC-AC-GGAT---CAGCACGTAGAGAGAGACCGAGCTGATCCTCGGCTTA
* * * * * *
12781839 CGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAC
448 CACATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATAA
*
12781904 GGAGTTCATT-CCATGTCTAA
513 AGAGTTCATTCCCA-GTCTAA
**
12781924 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGAGGTAACAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGAGACAACAGGATCAACA
* * * *
12781989 GCACGCAGG-GGATATTGGGTCAATCCCTGACTTATGCATTCTGCCTCTCCG-GCCGGCTGAGCA
66 GCACGCAGGAGG--ACTGAGTCAATCCCCGACTTATGCATTCTACCTCTCCGAG-CGGCTGAGCA
* * *
12782052 CCCGCACGCTCATTTCATGGGTTGGC-TTAGGCATACAGAGTTTATTCCATGTCTAAGCATTCAG
128 CCCGCACACTCATTTCATGGGTTGGCTTTA-GCATACAGAGTTCATTCCATGTCTAAGCATACAG
12782116 AGTTCATTCCCAGTCTAAGATC-GAACCGGATTGAGGGTTACGGTAGCAGGACCAGCAGCAGGAT
192 AGTTCATTCCCAGTCTAAGATCAG-ACCGGATTGAGGGTTACGGTAGCAGGACC-G-A-CA-G--
* *
12782180 CGACAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGA-CTGGCTG
250 -GAC-GCA-G--GGGGGGACCAAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATC-GGCTG
* *
12782244 AGCCGCCCGCACTCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
309 AG-CGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* *
12782309 CAGCCGGACCAAGGGTTGTGGCAGT-GG-GAC-C-GAT-AGCACGTAGAGAGAGACCGAG-TCGA
373 CAGCCAGACCAAGGGTTGTGGCAATAGGCGACACGGATCAGCACGTAGAGAGAGACCGAGCT-GA
* ** * * * **
12782368 TCC-CTGGCTTGCACATTATGCCTCTTTGGCCAGCTCAGCGCCTGCATGCTCGTTTTGTGGGTTG
437 TCCTC-GGCTTACACATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTG
12782432 ACTTAAGCATAAAGAGTTCATTCCCAGTCTAA
501 ACTTAAGCATAAAGAGTTCATTCCCAGTCTAA
12782464 G
1 G
12782465 AGCAGACCGA
Statistics
Matches: 459, Mismatches: 61, Indels: 42
0.82 0.11 0.07
Matches are distributed among these distances:
538 2 0.00
539 7 0.02
540 303 0.66
541 4 0.01
542 1 0.00
543 2 0.00
544 4 0.01
546 1 0.00
547 3 0.01
548 6 0.01
549 1 0.00
550 1 0.00
551 48 0.10
552 76 0.17
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (532 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGAGACAACAGGATCAACA
GCACGCAGGAGGACTGAGTCAATCCCCGACTTATGCATTCTACCTCTCCGAGCGGCTGAGCACCC
GCACACTCATTTCATGGGTTGGCTTTAGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGGTAGCAGGACCGACAGGACGCAGGGGG
GGACCAAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTG
TGGCAATAGGCGACACGGATCAGCACGTAGAGAGAGACCGAGCTGATCCTCGGCTTACACATTAT
GCCTCTCCGACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATAAAGAGTTCA
TTCCCAGTCTAA
Done.