Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 63 of 138
Found at i:12782821 original size:26 final size:26
Alignment explanation
Indices: 12782791--12782843 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12782781 GTTGACTTAG
12782791 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
12782817 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12782843 G
1 G
12782844 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12784718 original size:26 final size:26
Alignment explanation
Indices: 12784682--12784735 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
12784672 TGGGTTGACT
*
12784682 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCAGACGGAGTTCATCCCCAGTC
*
12784708 TAGGCAGACGGAGTTCATTCCCAGTC
1 TAGGCAGACGGAGTTCATCCCCAGTC
12784734 TA
1 TA
12784736 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGGCAGACGGAGTTCATCCCCAGTC
Found at i:12786065 original size:26 final size:26
Alignment explanation
Indices: 12786035--12786087 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12786025 GTTGGCTTAG
12786035 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12786061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12786087 G
1 G
12786088 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12786461 original size:26 final size:26
Alignment explanation
Indices: 12786411--12786463 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
12786401 GTTGACTTAG
*
12786411 GCATACGAAGTTCATCCCCGATCTAA
1 GCATACGAAGTTCATCCCAGATCTAA
12786437 GCATAC-AGAGTTCATTCCCAG-TCTAA
1 GCATACGA-AGTTCA-TCCCAGATCTAA
12786463 G
1 G
12786464 ATCCCCAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 18 0.75
27 5 0.21
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAGATCTAA
Found at i:12787294 original size:26 final size:26
Alignment explanation
Indices: 12787257--12787309 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12787247 GTTGACTTAG
*
12787257 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
* *
12787283 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
12787309 G
1 G
12787310 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:12789800 original size:26 final size:26
Alignment explanation
Indices: 12789748--12789800 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12789738 GTTGGCTTCG
*
12789748 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
12789774 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
12789800 G
1 G
12789801 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:12796357 original size:26 final size:26
Alignment explanation
Indices: 12796321--12796373 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12796311 GTTGACTTAG
12796321 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
12796347 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12796373 G
1 G
12796374 ATCGATCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12796825 original size:158 final size:157
Alignment explanation
Indices: 12796347--12796847 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 157
12796337 TCCAGTCTAA
* *
12796347 GCATATGGAGTTCATTCCCA-GTCTAAGATC-GATCAGACCGAGGGTTGCGGCAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGA-CGAGGGTTGTGGCAACAGGATCGAC
* * * * *
12796410 AGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGTGCATTCTACCTCTTC-GACTGGCTAAGCA
64 AGCACGCAGAGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGAC-GGCTAAGCG
* *
12796474 CCCGCACA-CCCGTTTCGTGGGTTGGCTTAG
128 CCCGCA-AGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * * *
12796504 GCATAGGGAGTTAATTCCATGTCTAAGCCCCA-ACCAGACTGAGGGTTGTGGTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGAC-GAGGGTTGTGGCAACAGGATCGAC
* * * * * *
12796568 AGCACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCGCATTAC-GCCTCTTCGGCCGGCTCAGC
64 AGCACGCAGAG-GGGACCGGGCCAATCCCCGGCTTGCGCATT-CTGCCTCTTCGGACGGCTAAGC
* * *
12796632 GGCCGCACGCTCATTTCGTGGGTTGACTTAG
127 GCCCGCAAGCTCATTTCGTGGGTTGGCTTAG
* *
12796663 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCAGATCGAGGGTTGTGGCAACAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGA-CGAGGGTTGTGGCAACAGGATCGAC
* * * * * * * ** * *
12796727 AGCATGTAGTGGGGACCGGGCCAATCCCCGGCTTACACATTCTGCCTCTCCGGTCGATTGAGTGC
64 AGCACGCAGAGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGACGGCTAAGCGC
*
12796792 CCGCAAGATCATTTCGTGGGTTGGCTTAG
129 CCGCAAGCTCATTTCGTGGGTTGGCTTAG
12796821 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12796848 CTCCAGCCTG
Statistics
Matches: 274, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 26 0.09
158 124 0.45
159 114 0.42
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACGAGGGTTGTGGCAACAGGATCGACAG
CACGCAGAGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGACGGCTAAGCGCCC
GCAAGCTCATTTCGTGGGTTGGCTTAG
Found at i:12798064 original size:159 final size:159
Alignment explanation
Indices: 12797879--12798237 Score: 402
Period size: 159 Copynumber: 2.3 Consensus size: 159
12797869 TGCCCGTTTT
* * * *
12797879 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAGGCCCCAG-TCGGACTGAGGGTTGTG
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAG-ACCAGATCGAACTGAGGGTTGTG
* * * *
12797943 GTAGCGAGACC-AGCAGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCT
65 GCAGCAAGACCGA-CAGCACGCAGAGGGGAACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCT
**
12798007 CCGACTGGCACAGCGCTGGCACGCTCATTTC
129 CCGACTGGCACAGCGCCCGCACGCTCATTTC
* * ***
12798038 GTGGTTTGACTTAGGCATACGGAGTTCATTCCCAA--TCTAAGATTGGATCGAACTGAGGGTTGT
1 GTGGGTTGGCTTAGGCATACGGAGTTCATT--CAATGTCTAAGACCAGATCGAACTGAGGGTTGT
* * * * * *
12798101 GGCAGCAAGATCGACAGCACGCAGAGGGGAACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCT
64 GGCAGCAAGACCGACAGCACGCAGAGGGGAACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCT
** * *
12798166 CCGACTGGCTGAGTGCCCGCAGGCTCATTTC
129 CCGACTGGCACAGCGCCCGCACGCTCATTTC
* * *
12798197 ATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAG
12798238 CATATGGAGT
Statistics
Matches: 164, Mismatches: 30, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 1 0.01
159 157 0.96
160 1 0.01
161 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (159 bp):
GTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGACCAGATCGAACTGAGGGTTGTGG
CAGCAAGACCGACAGCACGCAGAGGGGAACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCC
GACTGGCACAGCGCCCGCACGCTCATTTC
Found at i:12798566 original size:171 final size:170
Alignment explanation
Indices: 12798272--12798605 Score: 427
Period size: 171 Copynumber: 2.0 Consensus size: 170
12798262 AGATCGAGTC
** * *
12798272 GGACCGAGGGTTACGGCAGCAGGACCATTAGGAGGATCGACAGCACGCAAGGGGGATCGGGCCGA
1 GGACCGAGGGTTACGGCAGCAGGACCAGCACGAGGATCGACAGAACGCAAGGGGGATCGGGCCGA
* * * * *
12798337 TCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCACCTGCACGCTCATTTCATGGGTTGG
66 TCCCCGGCTTGCACATTATGCCTCTTCGACCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGA
*
12798402 CTTAGGCATACGGAGTTCAT-TCTAAGTCTAAGCCCTAATG
131 CTTAGGCATACGGAGTTCATCACT-AGTCTAAGCCCTAATG
** * * **
12798442 GGACCGAGGGTTGTGGCAGCAGGACCGGCACTAGGATCGACAGAACGCAGAGGGGGATCGGGTTG
1 GGACCGAGGGTTACGGCAGCAGGACCAGCACGAGGATCGACAGAACGCA-AGGGGGATCGGGCCG
* ** * * *
12798507 ATCCCTGGCTTGCACATTATGCCTCTTCGACTGGCTGAGCACCCGTATGCTCGTTTCATGGGTTG
65 ATCCCCGGCTTGCACATTATGCCTCTTCGACCAGCTGAGCACCCGCACGCTCATTTCATGGGTTG
* *
12798572 ACTTTGTCATACGGAGTTCATCACTAGTCTAAGC
130 ACTTAGGCATACGGAGTTCATCACTAGTCTAAGC
12798606 ATATGGAGTT
Statistics
Matches: 138, Mismatches: 24, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
170 41 0.30
171 95 0.69
172 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (170 bp):
GGACCGAGGGTTACGGCAGCAGGACCAGCACGAGGATCGACAGAACGCAAGGGGGATCGGGCCGA
TCCCCGGCTTGCACATTATGCCTCTTCGACCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGA
CTTAGGCATACGGAGTTCATCACTAGTCTAAGCCCTAATG
Found at i:12798626 original size:26 final size:26
Alignment explanation
Indices: 12798579--12798630 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12798569 TTGACTTTGT
*
12798579 CATACGGAGTTCATCACTAGTCTAAG
1 CATACGGAGTTCATCACCAGTCTAAG
*
12798605 CATATGGAGTTCATTC-CCAGTCTAAG
1 CATACGGAGTTCA-TCACCAGTCTAAG
12798631 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCACCAGTCTAAG
Found at i:12798633 original size:367 final size:355
Alignment explanation
Indices: 12798109--12798822 Score: 842
Period size: 367 Copynumber: 2.0 Consensus size: 355
12798099 GTGGCAGCAA
* ** *
12798109 GATCGACAGCACGCAGAGGGGAACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTGG
1 GATCGACAGAACGCAGAGGGGAACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACTGG
** *
12798174 CTGAGTGCCCGCAGGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 CTGAGCACCCGCAGGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
*
12798239 ATATGGAGTTCATTCCCAGTATAAGATC-GAGTCGGACCGAGGGTTACGGCAGCAGGACCATTAG
131 ATATGGAGTTCATTCCCAGTATAAGATCAGA-CCGGACCGAGGGTTAC-G-A-CA-G--CA-T--
* * * *
12798303 GA-GGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGC
186 GATGG---G-CAGCACGCAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCAGC
* * * * *
12798367 CAGCTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTAAGTCTA
247 CAACTAAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTA
**
12798432 AGCCCTAATGGGACCGAGGGTTGTGGCAGCAGGACCGGCACTAG
312 AGCCCTAACCGGACCGAGGGTTGTGGCAGCAGGACCGGCACTAG
* * * * *
12798476 GATCGACAGAACGCAGAGGGGGATCGGGTTGATCCCTGGCTTGCACATTATGCCTCTTCGACTGG
1 GATCGACAGAACGCAGAGGGGAACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACTGG
* * * * * *
12798541 CTGAGCACCCGTATGCTCGTTTCATGGGTTGACTTTGTCATACGGAGTTCA-T-CACTAGTCTAA
66 CTGAGCACCCGCAGGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCA-T-GTCTAA
* *
12798604 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCATGATGGGCA
129 GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTACGACAGCATGATGGGCA
* * * * * * **
12798669 GCATGTAGGGGGGACCGAGTCGATCCCCGGCTTGTGCATTCTACCTTTTCAGCCAACTAAGTGCC
194 GCACGCAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCAGCCAACTAAGCACC
* * * * *
12798734 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCGG
259 CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCTAACCGG
*
12798799 ACCGAGGGTTGTGGCAGCGGGACC
324 ACCGAGGGTTGTGGCAGCAGGACC
12798823 AACAGCACAT
Statistics
Matches: 297, Mismatches: 46, Indels: 20
0.82 0.13 0.06
Matches are distributed among these distances:
355 131 0.44
356 1 0.00
358 2 0.01
359 2 0.01
360 1 0.00
361 2 0.01
363 1 0.00
364 2 0.01
365 3 0.01
366 3 0.01
367 147 0.49
368 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (355 bp):
GATCGACAGAACGCAGAGGGGAACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACTGG
CTGAGCACCCGCAGGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
ATATGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTACGACAGCATGATGGGCAGC
ACGCAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCAGCCAACTAAGCACCCG
CACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCTAACCGGAC
CGAGGGTTGTGGCAGCAGGACCGGCACTAG
Found at i:12798924 original size:159 final size:159
Alignment explanation
Indices: 12798604--12799107 Score: 378
Period size: 158 Copynumber: 3.2 Consensus size: 159
12798594 ACTAGTCTAA
* * * * ****
12798604 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCATGATGGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCATTAGACCGGACCGAGGGTTGCGGCAGCAGGACCAA
*** * * * * * * * * * *
12798667 CAGCATGTAGGGGGGACC-GAGTCGATCCCCGGCTTGTGCATTCTACCTTTTCAGCCAACT-AAG
65 CAGCACACAAGGGGGACCAG-GCCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCAGCTCAA-
* * * * *
12798730 TGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CGCCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * *
12798762 GCATAGGGAGTTCATTCCATGTCTAAGCCTTAG-CCGGACCGAGGGTTGTGGCAGCGGGACCAAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATTAGACCGGACCGAGGGTTGCGGCAGCAGGACCAAC
* *
12798826 AGCACATATAGGGGGACC-GAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAAC
66 AGCACACA-AGGGGGACCAG-GCCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCAGCTCAAC
* * *
12798890 GCTCGAACGCTCATTTTGTGGGTTGACTTAG
129 GCCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * ***
12798921 GCATACGAAGTTCATTCC-TAATCTAAG-ATTGGACTGGACTGAGGGTTGCGGCAGTAGGATTGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCATTAGACCGGACCGAGGGTTGCGGCAGCAGGACCAA
* * * ** * * * * * *
12798984 TAGCACGCAGGGGGGACCAGGTTGATCCCCGACTTGCGCATTTTGCCTCTCTAGTCTGTTGAGCG
65 CAGCACACAAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCAGCTCAACG
* *
12799049 CCCGCACGCTCATTTCGTGGGTAGGCTTAG
130 CCCGAACGCTCATTTCGTGGGTTGGCTTAG
12799079 GCATACGG-GTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
12799108 ACGGAGTTCA
Statistics
Matches: 272, Mismatches: 65, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 18 0.07
158 134 0.49
159 118 0.43
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATTAGACCGGACCGAGGGTTGCGGCAGCAGGACCAAC
AGCACACAAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCAGCTCAACGC
CCGAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12799120 original size:26 final size:25
Alignment explanation
Indices: 12799079--12799130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
12799069 GTAGGCTTAG
12799079 GCATACGGGTTCATT-CCATGTCTAA
1 GCATACGGGTTCATTCCCA-GTCTAA
12799104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGG-GTTCATTCCCAGTCTAA
12799130 G
1 G
12799131 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.32
26 14 0.56
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGGTTCATTCCCAGTCTAA
Found at i:12800740 original size:159 final size:156
Alignment explanation
Indices: 12800360--12800747 Score: 379
Period size: 159 Copynumber: 2.5 Consensus size: 156
12800350 ATCTCCAGTC
* * *
12800360 TAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATC-
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTACGGCAGCAGGATCG
* * *
12800424 AGCAGCACGCAGGGGGATTAGGCCAATCCCCAGCTTGTGCATTCTACCTCTCCGACCGGCTAAGC
66 A-CAGCACACAGGGGGATTAGGCCAATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTAAG-
* * * *
12800489 ACCCGCATGCCCATTTCGTGGGTTGGCT
129 ACCCACACGCCCATTTCATGGGTTGACT
* * * ** * ** *
12800517 TAGGCATAGGGAGTTCATT-CCATGTGTAAG-CCACAGTCGGACCGAGGGTTGTGGCAGCGGGAT
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCA-AACCGAACCGAGGGTTACGGCAGCAGGAT
* *** * * *
12800580 CGACAGCACACAGAGGGGGATTGGGGTGATCCCCGGCTTGCGTATTATGCCTCTCCGACCGGCTC
64 CGACAGCACAC--AGGGGGATTAGGCCAATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCT-
* *
12800645 AATG-CCCATACGCTCATTTCATGGGTTGACT
126 AA-GACCCACACGCCCATTTCATGGGTTGACT
* * * *
12800676 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTACAGCAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTACGGCAGCAGGATCG
*
12800741 ATAGCAC
66 ACAGCAC
12800748 GTAGGGGGGC
Statistics
Matches: 182, Mismatches: 40, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
156 5 0.03
157 53 0.29
158 1 0.01
159 115 0.63
160 7 0.04
161 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (156 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTACGGCAGCAGGATCG
ACAGCACACAGGGGGATTAGGCCAATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTAAGAC
CCACACGCCCATTTCATGGGTTGACT
Found at i:12800887 original size:26 final size:26
Alignment explanation
Indices: 12800837--12800889 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12800827 GTTGGCTTAG
*
12800837 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12800863 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12800889 G
1 G
12800890 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12801013 original size:184 final size:184
Alignment explanation
Indices: 12800679--12801048 Score: 447
Period size: 184 Copynumber: 2.0 Consensus size: 184
12800669 GTTGACTTAG
* * *
12800679 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTACAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCAAACCGAGGGTTACAGCAGCAGGATCGATA
* * * * ** *
12800744 GCACGTAGGGGGGCTGGGCTGATTCTCCGGTTTGTGCATTCTGCCTCTCTGGTCGACTGAGCGCC
66 GCACGCAGGGGGGCCGGGCTGATTCCCCGGCTTACGCATTCTGCCTCTCTGATCGACTGAGCGCC
** *
12800809 CGCACGTTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*** * * * *
12800863 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCAAACCGAGGGTTACAGCAGCAGGATCGATA
** * * *
12800928 GCTTGCAGGGGGGACCGTGCTGA-TCCCCGGCTTACGCATTCTGCCTCT-TCGATTGGCTGAGCG
66 GCACGCAGGGGGG-CCGGGCTGATTCCCCGGCTTACGCATTCTGCCTCTCT-GATCGACTGAGCG
* * * *
12800991 TCCGCATGCCCATTTCGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12801047 GC
1 GC
12801049 CCCAGCCGGA
Statistics
Matches: 155, Mismatches: 29, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
183 1 0.01
184 147 0.95
185 7 0.05
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAAACCAAACCGAGGGTTACAGCAGCAGGATCGATA
GCACGCAGGGGGGCCGGGCTGATTCCCCGGCTTACGCATTCTGCCTCTCTGATCGACTGAGCGCC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:12802242 original size:26 final size:26
Alignment explanation
Indices: 12802213--12802265 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12802203 TTTGACTTTT
*
12802213 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12802239 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12802265 G
1 G
12802266 ATTGAACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12802952 original size:26 final size:26
Alignment explanation
Indices: 12802916--12802968 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12802906 GTTGACTTAG
12802916 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
12802942 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12802968 G
1 G
12802969 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12803059 original size:196 final size:195
Alignment explanation
Indices: 12802686--12803321 Score: 573
Period size: 196 Copynumber: 3.3 Consensus size: 195
12802676 GCCTCTCTAG
* * *
12802686 TCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCAT-GTC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TCCCTAGTC
* * * * ** * **
12802750 TAAGC------GTTCATTTCCAGTCCATGATCGGATTGGACCGAGGGTTGCGACAGCAAAACCAA
65 TAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGCAGCAGGACCAA
* *
12802809 CAGCAGGATCGACAGCACATAGGGGGGACCAGGCCGATCCTTGACTTGCGCATTCTACCTCTTCG
130 CAGCAGGATCGACAGCACATAGGGGGGACCAGGCCGAACCTTGACTTACGCATTCTACCTCTTCG
12802874 A
195 A
* *
12802875 TCGGCTGAGCGCTCGC-CTGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTC
1 TCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCTAGTC
* ** *
12802939 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGACTA
65 TAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGCAGCAGGACCA
* * * ** * *
12803004 GCAGCAGGATCGGCATCATGTAGGGGGGACC-GAGCCGAACCTT-AGCTTACGCATTCTGCTTCT
129 ACAGCAGGATCGACAGCACATAGGGGGGACCAG-GCCGAACCTTGA-CTTACGCATTCTACCTCT
*
12803067 TCGG
192 TCGA
* * * *
12803071 TTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCTA-GTC
* * * ***
12803135 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGTGTTATGGCAGCAGGATTG
65 TAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGCAGCAGGACCA
* * * * * * * **
12803200 ACAGC---A-C-ACAG--GA-A---GGGATCGGGCTGGACCCTGGCTTGTGCATTCTACCTC-TC
129 ACAGCAGGATCGACAGCACATAGGGGGGACCAGGCCGAACCTTGACTTACGCATTCTACCTCTTC
*
12803253 CA
194 GA
* *
12803255 GTCGACTGAGCGGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGT
1 -TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TCCCTAGT
12803319 CTA
64 CTA
12803322 CGATCGGACC
Statistics
Matches: 365, Mismatches: 65, Indels: 38
0.78 0.14 0.08
Matches are distributed among these distances:
184 2 0.01
185 80 0.22
186 5 0.01
188 6 0.02
189 57 0.16
191 2 0.01
192 1 0.00
193 1 0.00
195 3 0.01
196 207 0.57
197 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (195 bp):
TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCTAGTCT
AAGCATAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGCAGCAGGACCAAC
AGCAGGATCGACAGCACATAGGGGGGACCAGGCCGAACCTTGACTTACGCATTCTACCTCTTCGA
Found at i:12803142 original size:26 final size:26
Alignment explanation
Indices: 12803112--12803164 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12803102 GTTGGCTTAG
12803112 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12803138 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12803164 G
1 G
12803165 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12803510 original size:26 final size:26
Alignment explanation
Indices: 12803480--12803532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12803470 GTTGACTTAG
12803480 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12803506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12803532 G
1 G
12803533 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12804404 original size:26 final size:26
Alignment explanation
Indices: 12804375--12804427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12804365 GTTGGCTTAG
*
12804375 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
12804401 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12804427 G
1 G
12804428 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12805093 original size:26 final size:26
Alignment explanation
Indices: 12805063--12805115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12805053 GTTGACTTAG
12805063 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
12805089 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12805115 G
1 G
12805116 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12805599 original size:26 final size:26
Alignment explanation
Indices: 12805569--12805621 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12805559 GTTGGCTTAG
*
12805569 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12805595 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12805621 G
1 G
12805622 GTCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12805820 original size:26 final size:26
Alignment explanation
Indices: 12805790--12805842 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12805780 GTTGACTTAG
*
12805790 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
12805816 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12805842 G
1 G
12805843 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12806857 original size:26 final size:26
Alignment explanation
Indices: 12806821--12806873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12806811 GTTGACTTAG
12806821 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12806847 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12806873 G
1 G
12806874 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12807266 original size:158 final size:157
Alignment explanation
Indices: 12806847--12807347 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 157
12806837 CCCAGTCTAA
* *
12806847 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG-AACAGGATCGACA
* * * * * * * *
12806912 -ATGCGCAGGGGGGACTGGGCCGATCCCCGAC-TAGCACATTCTACCTCTCTGACCTGCTGAGTG
65 GA-ACGTAGGGGGGACCGGGCCGATCCCCGACTTA-CGCATTCTGCCTCTCCGGCCGGCTGAGTG
* *
12806975 CCCGCATGCCCATTTCATGGGTTGGCTTAG
128 CCCGCATGCTCATTTCATGGGTTGACTTAG
* ** ** * * * *
12807005 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCCACCGGACTGAGGGTTGTGGCAGC-GGACCTG-
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGG-AACAGGATC-GA
* * ** * * * * * * *
12807067 TAGAACATAGAATGGGATCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGT
63 CAGAACGTAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGT
*
12807132 GCCCGCATGCTCATTTCCTGGGTTGACTTAG
127 GCCCGCATGCTCATTTCATGGGTTGACTTAG
* *
12807163 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGTAATAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG-AACAGGATCGACA
* * * * * **
12807228 GCACGTAGGGGGGACCGGGTCGGTCCCCAACTTACGCATTCTGCCTCTTCGGTAGGCTGAGTGCC
65 GAACGTAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
* * * *
12807293 CACACGCTCGTTTCATGGGTT-AGCTTAT
130 CGCATGCTCATTTCATGGGTTGA-CTTAG
*
12807321 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12807348 CATACGAAGT
Statistics
Matches: 265, Mismatches: 68, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 15 0.06
158 235 0.89
159 15 0.06
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGAACAGGATCGACAG
AACGTAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGTGCCC
GCATGCTCATTTCATGGGTTGACTTAG
Found at i:12807351 original size:26 final size:26
Alignment explanation
Indices: 12807321--12807373 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12807311 GTTAGCTTAT
12807321 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
12807347 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12807373 G
1 G
12807374 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12808210 original size:26 final size:26
Alignment explanation
Indices: 12808180--12808232 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12808170 GTTGACTTAG
*
12808180 GCATACAGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12808206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12808232 G
1 G
12808233 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12808685 original size:158 final size:159
Alignment explanation
Indices: 12808254--12808708 Score: 486
Period size: 159 Copynumber: 2.9 Consensus size: 159
12808244 CCGGACCGAA
* *
12808254 GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCTGATCCTCGACTTGCACATTCTG
1 GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGACTTGCGCATTCTG
* * *
12808319 CCTCTCCGGTCGGTTGAGCACCCGCACACC-CATTTCATGGGTTGGCTTAGGCATAGGGGGTTCA
66 CCTCTCCGATCGGTTGAGCACCCGCAC-CCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * * *
12808383 TT-CCATGTCTAAGCCTCAGCCAAACCGAG
130 TTCCCATGTCCAAGACTCACCCAAACCAAG
* ** * * * * * * *
12808412 GGTTGTGGCAGTGGGATCGGCAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTAT
1 GGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGATCAGGCCGATCCTCGACTTGCGCATTCT
* * * * * * * * * *
12808477 GCCTCTCTGTTTGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
65 GCCTCTCCGATCGGTTGAGCACCCGCACCCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * *
12808542 TTCCCAT-TCCAAGATTGACCCAGACCAAG
130 TTCCCATGTCCAAGACTCACCCAAACCAAG
* * * * * * *
12808571 GGTTGCGACAGCAGGATCGATAGCATGCAGGGGGGACCAGGCCGATCCCCGACTTGCGGACTCTG
1 GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGACTTGCGCATTCTG
* * *
12808636 CCTCTCCGACCGGTTGAGCACCCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
66 CCTCTCCGATCGGTTGAGCACCCGCACCCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
12808701 T-CCATGTC
131 TCCCATGTC
12808709 TAAGCCCCAG
Statistics
Matches: 232, Mismatches: 61, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
157 4 0.02
158 107 0.46
159 117 0.50
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGACTTGCGCATTCTG
CCTCTCCGATCGGTTGAGCACCCGCACCCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCCATGTCCAAGACTCACCCAAACCAAG
Found at i:12808731 original size:158 final size:158
Alignment explanation
Indices: 12808247--12808733 Score: 510
Period size: 158 Copynumber: 3.1 Consensus size: 158
12808237 GATCGGACCG
* * *
12808247 GACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCTGATCCTCGACTTGCA
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGACTTGCG
* *
12808312 CATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACACC-CATTTCATGGGTTGGCTTAGGCATAGG
66 CATTCTGCCTCTCCGATCGGTTGAGCACCCGCAC-CCTCATTTCATGGGTTGGCTTAGGCATACG
*
12808376 GGGTTCATTCCATGTCTAAGCCTCAGCCA
130 GAGTTCATTCCATGTCTAAGCCTCAGCCA
* * ** * * * * * *
12808405 AACCGAGGGTTGTGGCAGTGGGATCGGCAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTAC
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGATCAGGCCGATCCTCGACTTGC
* * * * * * * * * * *
12808470 GCATTATGCCTCTCTGTTTGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACA
65 GCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACCCTCATTTCATGGGTTGGCTTAGGCATACG
* ** * *
12808535 GAGTTCATTCCCAT-TCCAAGATTGACCCA
130 GAGTTCATT-CCATGTCTAAGCCTCAGCCA
* * * * * *
12808564 GACCAAGGGTTGCGACAGCAGGATCGATAGCATGCAGGGGGGACCAGGCCGATCCCCGACTTGCG
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGACTTGCG
* * * * *
12808629 GACTCTGCCTCTCCGACCGGTTGAGCACCCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGG
66 CATTCTGCCTCTCCGATCGGTTGAGCACCCGCACCCTCATTTCATGGGTTGGCTTAGGCATACGG
* ***
12808694 AGTTCATTCCATGTCTAAGCCCCAGTTG
131 AGTTCATTCCATGTCTAAGCCTCAGCCA
12808722 GACCGAGGGTTG
1 GACCGAGGGTTG
12808734 TGATAGTAAG
Statistics
Matches: 252, Mismatches: 73, Indels: 8
0.76 0.22 0.02
Matches are distributed among these distances:
157 4 0.02
158 127 0.50
159 117 0.46
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGACTTGCG
CATTCTGCCTCTCCGATCGGTTGAGCACCCGCACCCTCATTTCATGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCTCAGCCA
Found at i:12809242 original size:26 final size:26
Alignment explanation
Indices: 12809212--12809264 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12809202 GTTGGCTTAG
12809212 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12809238 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12809264 G
1 G
12809265 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12809969 original size:26 final size:26
Alignment explanation
Indices: 12809933--12809985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12809923 GTTGACTTAG
12809933 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12809959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12809985 G
1 G
12809986 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12810460 original size:159 final size:156
Alignment explanation
Indices: 12809959--12810461 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 156
12809949 CCCAGTCTAA
* *
12809959 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGTAGGATCGGC
* * * *
12810023 AGCACGCAATGGGGATCGGGTCAATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCAC
65 AGCACGCAAGGGGGATCGGG-CCATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC-G
*
12810088 CCGTGCGCC-CGTTTCGTGGGTTGGCTTAG
128 CC-TGCACCTCGTTTCGTGGGTTGGCTTAG
* ** * ** * * *
12810117 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGTAGGATCGGCA
* * * * * * * * * *
12810182 GCATGCAGAGGGGGACCGAGTCGATCCTCGGCTTGCTCATTATGCCTCTCCGACCGGCTCAGCGC
66 GCACGCA-AGGGGGATCG-GGCCATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
* * * * **
12810247 CCGCATGCTCGTTCCATGGGTTCACTTAG
129 CTGCA-CCTCGTTTCGTGGGTTGGCTTAG
* * * *
12810276 GCATACGAAGTTCATTCC-TAGTCTAAGATCAAACCGGACCGAGGGTTACGACAGTAGGATAGGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGTAGGATCGG-
* * * *
12810340 CAACACGTAAGGGGGATCGGGCCCATTCCT-AACTTGCGCATTCTGCCTCTTCGGCCAGCTGAGC
64 CAGCACGCAAGGGGGATCGGG-CCA-TCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
*
12810404 GCCTGCACACTCATTTCGTGGGTTGGCTTAG
127 GCCTGCAC-CTCGTTTCGTGGGTTGGCTTAG
* *
12810435 GCATACAGAGTTCATTCCATTTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12810462 CATACGGAGC
Statistics
Matches: 267, Mismatches: 67, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 62 0.23
159 188 0.70
160 12 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGTAGGATCGGCA
GCACGCAAGGGGGATCGGGCCATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCT
GCACCTCGTTTCGTGGGTTGGCTTAG
Found at i:12811756 original size:26 final size:26
Alignment explanation
Indices: 12811720--12811772 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12811710 GTTGACTTAG
12811720 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
12811746 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12811772 G
1 G
12811773 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12811933 original size:26 final size:26
Alignment explanation
Indices: 12811903--12811955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12811893 GTTGACTTAG
12811903 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12811929 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12811955 G
1 G
12811956 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12812271 original size:26 final size:26
Alignment explanation
Indices: 12812235--12812287 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12812225 GTTGGCATAG
*
12812235 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12812261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12812287 G
1 G
12812288 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12812577 original size:159 final size:159
Alignment explanation
Indices: 12812261--12812760 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 159
12812251 CCTAGTCTAA
* * ** * *
12812261 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GAACCAGATCGAGGGTTGCCACAGCAGGATTGG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAG-ACCAGACCGAGGGTTGTGACAGCAGGACTGA
* * * * * * ** *** * * *
12812324 TAGCACGTAG-GGGGGACTGGGCAGATCCCCGACTTGTGCATTCTGCCTC-TCTGGCCGGCTGAG
64 CAACATGCAGAGGGGGACCGGACCCATCCCCGACTTACACATTATACCTCTTC-GGCCGGCTCAG
* * **
12812387 TGCCCGCACGCCCATTTCATGGGTTGGCTTAG
128 TGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * *
12812419 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAGCAGGACCTG-
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AGACCAGACCGAGGGTTGTGACAGCAGGA-CTGA
* * * *
12812482 CAACATGCAGAGGGGGATCGGATCGATCCCC-AGCTTACATATTATACCTCTTCGGCCGGCTCAG
64 CAACATGCAGAGGGGGACCGGACCCATCCCCGA-CTTACACATTATACCTCTTCGGCCGGCTCAG
* *
12812546 TGCCCGGACGCTCGTTTTGTGGGTTGACTTAG
128 TGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * *
12812578 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCTGACTGAGGGTTGTGACAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGACAGCAGGACTGAC
* * * * * * * * * *
12812642 AGCATGGAGGGGGGGACCGGGCCCATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGTTCAGCG
65 AACATGCAGAGGGGGACCGGACCCATCCCCGACTTACACATTATACCTCTTCGGCCGGCTCAGTG
12812707 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * *
12812737 ACATACAGAGCTCATTCCATGTCT
1 GCATACGGAGTTCATTCCATGTCT
12812761 CAACATACAG
Statistics
Matches: 274, Mismatches: 56, Indels: 23
0.78 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 59 0.22
159 205 0.75
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGTGACAGCAGGACTGACA
ACATGCAGAGGGGGACCGGACCCATCCCCGACTTACACATTATACCTCTTCGGCCGGCTCAGTGC
CCGCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:12813146 original size:26 final size:26
Alignment explanation
Indices: 12813116--12813168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12813106 GTTGGCTTAG
12813116 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12813142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12813168 G
1 G
12813169 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12813305 original size:26 final size:26
Alignment explanation
Indices: 12813274--12813326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12813264 GTTGACTTAG
12813274 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12813300 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12813326 G
1 G
12813327 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12813367 original size:158 final size:158
Alignment explanation
Indices: 12813079--12813390 Score: 466
Period size: 158 Copynumber: 2.0 Consensus size: 158
12813069 CTCCGATCGG
* * * *
12813079 CTGAGCTCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* *
12813144 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATAGCAGTAGGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTAGAGCAGTAGGATCGACAGC
* *
12813209 ACGCAGGGGGGACCGAGCCGATCCCCGA
131 ACGCAAGGCGGACCGAGCCGATCCCCGA
* *
12813237 CTGAGCGCCCATACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
*
12813302 ATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACCGAGGGTT-GCGACAGTAGGATCGACA
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTAGAG-CAGTAGGATCGACA
* * *
12813365 GCATGCAAGGCGGACCGGGCCTATCC
129 GCACGCAAGGCGGACCGAGCCGATCC
12813391 TCAATTTTTG
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
157 2 0.01
158 136 0.99
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTGAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTAGAGCAGTAGGATCGACAGC
ACGCAAGGCGGACCGAGCCGATCCCCGA
Found at i:12813494 original size:26 final size:26
Alignment explanation
Indices: 12813458--12813510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12813448 GTTGGCTTAG
*
12813458 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
12813484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
12813510 G
1 G
12813511 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:12813596 original size:184 final size:183
Alignment explanation
Indices: 12813237--12813656 Score: 472
Period size: 184 Copynumber: 2.3 Consensus size: 183
12813227 CGATCCCCGA
** * * *
12813237 CTGAGCGCCCATACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCACAGTCTAAGC
* *
12813302 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGACAGTAGGATCGACAGC
65 ATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGCGACAGCAGGATCGACAGC
** * ** * * * *
12813367 ATGCAAGGCGGACCGGGCCTATCCTCAATTTTTGCATTTTGCCTCTCCGATCGG
130 ACACAAGGCGGACCAGGCAGATCCTCAACTTGTGCATTCTGCCTCTCCGACCGG
* * * *
12813421 CTGAGTGCCCGCACGCTCGTTACATGGGTTGGCTTAGGCATACGGAGTTCATTCATAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCACAGTCTAAGC
* **
12813486 ATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAG-ATCGAGGGTTGCGACAGCAGGATCGGTA
65 ATACGGAGTTCATTCCCAGTCTAAGATCAG-A-CAGAACCGAGGGTTGCGACAGCAGGATCGACA
* * * ** *
12813549 GCACACAGGGGGGATCAGGCAGATCC-CTGGCTTGTGCATTCTGCCTCTCCGGCCGG
128 GCACACAAGGCGGACCAGGCAGATCCTC-AACTTGTGCATTCTGCCTCTCCGACCGG
* *
12813605 CTGAGCGCCCGCATGC-CTGTTTCGTGGGTTGACTTAGGCATA-GAGTTCATTC
1 CTGAGCGCCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGAGTTCATTC
12813657 CATGTCTCAA
Statistics
Matches: 197, Mismatches: 35, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
182 10 0.05
183 3 0.02
184 182 0.92
185 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (183 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCACAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGCGACAGCAGGATCGACAGCA
CACAAGGCGGACCAGGCAGATCCTCAACTTGTGCATTCTGCCTCTCCGACCGG
Found at i:12813939 original size:159 final size:157
Alignment explanation
Indices: 12813484--12813976 Score: 498
Period size: 159 Copynumber: 3.1 Consensus size: 157
12813474 CATAGTCTAA
* * * **
12813484 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
** * * *
12813549 GCACACAGGGGGGATCAGGCAGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
65 GCATGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC-CC
*
12813614 C-GCATGC-CTGTTTCGTGGGTTGACTTAG
129 CTGCACGCTC-GTTTCGTGGGTTGACTTAG
* * * * * * *
12813642 GCATA--GAGTTCATTCCATGTCTCAA-ACCTAG-CCGGATTGAGGGTTGTGGTAGCCGGA-CTG
1 GCATACGGAGTTCATTCCA-GTCT-AAGA-TTGGACCAGATCGAGGGTTGCGGCAGCAGGATC-G
* * * * *
12813702 ACAGCATGCAGAGGGGGATCGGGCCGACCCCTGGCTTGCACATTATGCCTCTCTGGCCGGCTCA-
62 ACAGCATGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* *
12813766 CCGCCTGAACGCTCGTTTCGTGGGTTGACTAAAG
126 CC-CCTGCACGCTCGTTTCGTGGGTTGACT-TAG
* * * *
12813800 ACATACGGAGTTCATTCCTAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * **
12813865 GCATGTAGGGGGTATTGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCCCC
65 GCATGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCCC
*
12813930 TGCACGCTCGTTTCGTGGGTTGGCTTAG
130 TGCACGCTCGTTTCGTGGGTTGACTTAG
12813958 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
12813977 TGTTTAAGCA
Statistics
Matches: 267, Mismatches: 52, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
155 5 0.02
156 45 0.17
157 67 0.25
158 31 0.12
159 70 0.26
160 47 0.18
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAG
CATGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCCCT
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12815031 original size:159 final size:158
Alignment explanation
Indices: 12814843--12815368 Score: 533
Period size: 159 Copynumber: 3.3 Consensus size: 158
12814833 CACCCACACG
** * * *
12814843 CTCGTTTCATGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGTCCTAACTGGATCGAG
1 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCTAACCGGATCGAG
* * * * * * *
12814908 GGTTGTGGCAGTGGGATCGACAGCATGTAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTAT
66 GGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTAT
*
12814973 GCCTCATCGGTCGGCTCGACGCCCGTACA
131 GCCTC-TCGGTCGGCTCGACGCCCGCACA
* * *
12815002 CCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGATCGAG
1 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCTAACCGGATCGAG
* * * * *
12815067 GGTTGTGGTAGCGGGATTGACAGCACGCAGAGGGGGATTGGGCCAATCCCCGGCTTATGCATTAT
66 GGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTAT
* *
12815132 GCCCCTCCGGTCGGCTC-AGCGTCCGCACA
131 GCCTCT-CGGTCGGCTCGA-CGCCCGCACA
** * * ** * *
12815161 CTCGTTTCATGGATTGACTTAGGCATACTAAGTTTATTCCCA-GTCTAAGAT-C-AGACCGGACC
1 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-TCCTA-ACCGGATC
* ** * * * *
12815223 AAGGGTTGCAGCAGTAGGATCGACAGCACGCAG-GGGGGCATCGGACCGATCCCCGGCTTGTGGA
63 GAGGGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGG-ATCGGGCCGATCCCCGGCTTATGCA
* * * * * *
12815287 TTTTACCTCTCTGATCAGCT-GAAAGCCCGCACG
127 TTATGCCTCTC-GGTCGGCTCG-ACGCCCGCACA
12815320 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
12815369 CATACGGAGT
Statistics
Matches: 298, Mismatches: 59, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
158 12 0.04
159 282 0.95
160 4 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCTAACCGGATCGAG
GGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTAT
GCCTCTCGGTCGGCTCGACGCCCGCACA
Found at i:12815378 original size:26 final size:26
Alignment explanation
Indices: 12815342--12815394 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12815332 GTTGGCTTAG
12815342 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12815368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12815394 G
1 G
12815395 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12816022 original size:26 final size:26
Alignment explanation
Indices: 12815970--12816022 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12815960 GTTTGCTTAG
*
12815970 GCATACAGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
12815996 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
12816022 G
1 G
12816023 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:12816656 original size:158 final size:159
Alignment explanation
Indices: 12816225--12817484 Score: 969
Period size: 158 Copynumber: 8.0 Consensus size: 159
12816215 AAAATCAAAT
* * * * **
12816225 CGGACCGAGGGTTGCGGCAGCAGGATCGACAACATGCAG-GAGGGACTGGGCCGATCCCCAACTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTT
* * * * * * *
12816289 GCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATA
66 GCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * **
12816354 GGGAGTTCATTCCATGTCTAAGCCCCATT
131 CGGAGTTCATTCCATGTCTAAGCACCAGC
* * ** * * * * *
12816383 CGAACCGAGGGTTGTGGCAGTGGGACCGACAGCATGCAGAGGGGGACCGGGCCAATCCCCGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTT
* ** * ** * * * * * *
12816448 GCGCATTATGCCTCATCGGCCTGCTCAATGCCTGTACACTCCTTTTGTGGGTTGTCTTAGGCATA
66 GCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
*
12816513 -GGAGTTCATTCCATGTCTAAGCCCCAGC
131 CGGAGTTCATTCCATGTCTAAGCACCAGC
* * * * * *
12816541 CGGACTGAGGGTTGGGGCAGCAGGACCGACAGCATGCAGAGAGGGATCGAGCTGATCCCCGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTT
* * * * * *
12816606 GCACATTATGCCTCTTCGATCGGTTCAGCACTCGTACGCTCATTTCGTGGGTTGACTTATGCATA
66 GCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * *
12816671 CGAAGTTCATTCC-TAGTCTAAG-ATCAGAT
131 CGGAGTTCATTCCAT-GTCTAAGCACCAG-C
* * * * * * * * * *
12816700 CAGACCAAGGGTTACGGTAGTAGGATCGACAGCACGTAG-GGGGGACCGGGTCGATCCCTGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTT
* * * * * * *
12816764 GCGCATTCTACCTCTTAGATTGGCTCAGCGCCCG-AGTGCTCAATTCCTGGGTTGACTTAGGCAT
66 GCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCA-CGCTCATTTCGTGGGTTGACTTAGGCAT
* *
12816828 ACGAAGTTCATTCCCA-GTCTAAG-ATCAGAC
130 ACGGAGTTCATT-CCATGTCTAAGCACCAG-C
* * ** ** * * *
12816858 TGGATCGAGGGTTGCGGCAATAGGATCGACAGCACATAGCGAGGAACCGAG-CGATCCCCAGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTT
* * * *
12816922 GCACATTATGCCTAC--CGGTTGGCTCAGCGTCCCGAACGCTCATTTCGTGGGTTGACTTAGGCA
66 GCGCATTATGCCT-CTTCGATCGGCTCAGCG-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
*
12816985 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
129 TACGGAGTTCATT-CCATGTCTAAGCACCAG-C
** * * * * * * *
12817016 CAAACCGAGGGTTGCAGCAGCAGGATCGACAGCAAGTA-A-CGGGACCCAACCGATCCCCGACTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTT
* * * * * * * * *
12817079 GCGCATTCTGCCTCTCCGACCGACTAAGTGCCCGCACGCCCATTTCGTGGGGTGGCTTAGGCATA
66 GCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* *
12817144 GGGAGTTCATTCCATGTCTAAGCCCCAGC
131 CGGAGTTCATTCCATGTCTAAGCACCAGC
* * * * * * * * *
12817173 CGGATCGATGGTTGTGGCAGC-GAGACCGACAGCACGCAAAGTGGGATCGGGCCAATCCCCGGCT
1 CGGACCGAGGGTTGCGGCAGCAG-GATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCT
* * * * *
12817237 TGCGCATTATGCCTCTTTG-GCTGGCTCAGCGCCCGGATGCTCATTTCATGGGTTGACTTAGGCA
65 TGCGCATTATGCCTCTTCGATC-GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * **
12817301 TATGGAGTTCATTCCCA-GTCTAAG-ATCGAAT
129 TACGGAGTTCATT-CCATGTCTAAGCA-CCAGC
* * * * * * ** *
12817332 CAGACCGAGGGTTACGACAGCAGGATCGATAGCAAGCAG-GGGGGGTCGAGCCGGTCCCCGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTT
* * * * * *
12817396 GTGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCTCGA-TTCGTGGGTTGGCTTAGGCAT
66 GCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCAT
* *
12817460 ATGGAGTTCATTCCATGTGTAAGCA
130 ACGGAGTTCATTCCATGTCTAAGCA
12817485 TACAGAGTTC
Statistics
Matches: 874, Mismatches: 201, Indels: 53
0.77 0.18 0.05
Matches are distributed among these distances:
156 11 0.01
157 114 0.13
158 501 0.57
159 244 0.28
160 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTT
GCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCACCAGC
Found at i:12816770 original size:316 final size:316
Alignment explanation
Indices: 12816225--12817483 Score: 1129
Period size: 316 Copynumber: 4.0 Consensus size: 316
12816215 AAAATCAAAT
* * * * * *
12816225 CGGACCGAGGGTTGCGGCAGCAGGATCGACAACATGCAG-GAGGGA-CTGGGCCGATCCCCAACT
1 CGGATCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGATC-GAGCCGATCCCCAGCT
* * * * * *
12816288 TGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC-ACACGCTCATTTCATGGGTTGGCTTAGGCA
65 TGCACATTATGCCTCTTCGATCGGCTCAGCGCCCGA-ACGCTCATTTCATGGGTTGACTTAGGCA
* ** * ** ** *
12816352 TAGGGAGTTCATT-CCATGTCTAAGCCCCA-TTC-GAACCGAGGGTTGTGGCAGTGGGACCGACA
129 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAG-ACCGAGGGTTACGGCAGCAGGATCGACA
* * * *
12816414 GCATGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCATCGGCCTGCTCAATGC
191 GCAAGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCGGCCTGCTCAATGC
* * * * * *
12816479 CTGTACACTCCTTTTGTGGGTTGTCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGC
254 CCGCACGCTCCATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
12816541 CGGA-CTGAGGGTTGGGGCAGCAGGACCGACAGCATGCAGAGAGGGATCGAGCTGATCCCCGGCT
1 CGGATC-GAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGATCGAGCCGATCCCCAGCT
* * * * * *
12816605 TGCACATTATGCCTCTTCGATCGGTTCAGCACTCGTACGCTCATTTCGTGGGTTGACTTATGCAT
65 TGCACATTATGCCTCTTCGATCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCAT
* * * * * *
12816670 ACGAAGTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGTTACGGTAGTAGGATCGACAGCAC
130 ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAGGATCGACAGCAA
* * * * * ** ** **
12816735 GTAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTTAGATTGGCTCAGCGCCCG-A
195 GCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGGCCT-GCTCAATGCCCGCA
* * * * * **
12816799 GTGCTCAATTCCTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGAC
259 -CGCTCCATTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-C
* ** * ** * * *
12816858 TGGATCGAGGGTTGCGGCAATAGGATCGACAGCACATAGCGAGGAACCGAG-CGATCCCCAGCTT
1 CGGATCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGATCGAGCCGATCCCCAGCTT
* * *
12816922 GCACATTATGCCTAC--CGGTTGGCTCAGCGTCCCGAACGCTCATTTCGTGGGTTGACTTAGGCA
66 GCACATTATGCCT-CTTCGATCGGCTCAGCG-CCCGAACGCTCATTTCATGGGTTGACTTAGGCA
* * * *
12816985 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAGCAGCAGGATCGACAGCA
129 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAGGATCGACAGCA
* ** * * * *
12817050 AGTA-ACGGGACCCAACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACC-GACT-AAGTGCCC
194 AGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CGGCCTG-CTCAA-TGCCC
* *
12817112 GCACGC-CCATTTCGTGGGGTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
256 GCACGCTCCA-TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * *
12817173 CGGATCGATGGTTGTGGCAGC-GAGACCGACAGCACGCAAAGTGGGATCGGGCCAATCCCCGGCT
1 CGGATCGAGGGTTGCGGCAGCAG-GACCGACAGCACGCAGAGAGGGATCGAGCCGATCCCCAGCT
* * * * *
12817237 TGCGCATTATGCCTCTTTG-GCTGGCTCAGCGCCCGGATGCTCATTTCATGGGTTGACTTAGGCA
65 TGCACATTATGCCTCTTCGATC-GGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCA
* * *
12817301 TATGGAGTTCATTCCCAGTCTAAGATC-GAATCAGACCGAGGGTTACGACAGCAGGATCGATAGC
129 TACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAGACCGAGGGTTACGGCAGCAGGATCGACAGC
** * * * * * *
12817365 AAGCAGGGGGGGTCGAGCCGGTCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCG
193 AAGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCGGCCTGCTCAATGCCCG
* * *
12817430 CACGCTCGATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTGTAAGC
257 CACGCTCCATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12817484 ATACAGAGTT
Statistics
Matches: 753, Mismatches: 157, Indels: 65
0.77 0.16 0.07
Matches are distributed among these distances:
314 8 0.01
315 128 0.17
316 333 0.44
317 271 0.36
318 13 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (316 bp):
CGGATCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGATCGAGCCGATCCCCAGCTT
GCACATTATGCCTCTTCGATCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAGGATCGACAGCAAG
CAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGGCCTGCTCAATGCCCGCACG
CTCCATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:12817696 original size:26 final size:26
Alignment explanation
Indices: 12817666--12817718 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12817656 GTTGACTTAG
12817666 GTATACGGAGTTCA-TCCTCAGTCTAA
1 GTATACGGAGTTCATTCCT-AGTCTAA
*
12817692 GTATATGGAGTTCATTCCTAGTCTAA
1 GTATACGGAGTTCATTCCTAGTCTAA
12817718 G
1 G
12817719 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GTATACGGAGTTCATTCCTAGTCTAA
Found at i:12818052 original size:158 final size:158
Alignment explanation
Indices: 12817818--12818199 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 158
12817808 GCTGGCTGAG
* * * * * * **
12817818 CGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCC
1 CGCCCGTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGG
* ** *
12817881 AGCC-GAACTGAGGGTTATTGCAGCAAGA-CAGACAACACGCAGAGAGGGA-TTGGGCCGAT-CC
65 A-CCAGATC-GAGGGTTATACCAGCAAGATC-GACAACACGCAG-GAGGGACTT-AGCCGATCCC
* *
12817942 CGGCTTGCAG-ATTATAACTCTCCGGCTGGGTCAA
125 CGGCTTGC-GCATTATAACTCTCCGACCGGGTCAA
* * * *
12817976 CGCCCGTACGCTCATTTCATGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * *
12818041 CCAGATCGAGGGTTGTACCAGTAGGATCGACAGCACGCAGGGGGGACTTAGTCGATCCCCGGCTT
66 CCAGATCGAGGGTTATACCAGCAAGATCGACAACACGCAGGAGGGACTTAGCCGATCCCCGGCTT
*
12818106 GCGCATTATTACTCTCCGACCGGGTCAA
131 GCGCATTATAACTCTCCGACCGGGTCAA
* * * *
12818134 CGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGCGTTCATTCTCAGTCTAAGATCGGA
1 CGCCCGTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
12818199 C
66 C
12818200 TGGACCGAGG
Statistics
Matches: 185, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
157 11 0.06
158 166 0.90
159 8 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CGCCCGTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGATCGAGGGTTATACCAGCAAGATCGACAACACGCAGGAGGGACTTAGCCGATCCCCGGCTT
GCGCATTATAACTCTCCGACCGGGTCAA
Found at i:12818209 original size:158 final size:157
Alignment explanation
Indices: 12817936--12818245 Score: 415
Period size: 158 Copynumber: 2.0 Consensus size: 157
12817926 GGGATTGGGC
* * *
12817936 CGATCCCGGCTTGCAGATTATAACTCTCCGGCTGGGTCAACGCCCGTACGCTCATTTCATGGGTT
1 CGATCCCGGCTTGCAGATTATAACTCTCCGACCGGGTCAACGCCCGTACACTCATTTCATGGGTT
* * * * * *
12818001 GACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGTACCAGTAGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCACCAGCAGG
12818066 ATCGACAGCACGCAGGGGGGACTTAGT
131 ATCGACAGCACGCAGGGGGGACTTAGT
* * *
12818093 CGATCCCCGGCTTGC-GCATTATTACTCTCCGACCGGGTCAACGCCCGTACACTCGTTTCGTGGG
1 CGAT-CCCGGCTTGCAG-ATTATAACTCTCCGACCGGGTCAACGCCCGTACACTCATTTCATGGG
* * ** ***
12818157 TTGACTTAGGCATACGGCGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCA
64 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCACCAGCA
*
12818222 GGATCGATAGCACGCAGGGGGGAC
129 GGATCGACAGCACGCAGGGGGGAC
12818246 CGAGTTGGTC
Statistics
Matches: 131, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
157 5 0.04
158 126 0.96
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
CGATCCCGGCTTGCAGATTATAACTCTCCGACCGGGTCAACGCCCGTACACTCATTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCACCAGCAGG
ATCGACAGCACGCAGGGGGGACTTAGT
Found at i:12818306 original size:158 final size:157
Alignment explanation
Indices: 12817972--12818350 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 157
12817962 TCCGGCTGGG
* * * * *
12817972 TCAACGCCCGTACGCTCATTTCATGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGAT
1 TCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGAT
* * * * **
12818037 TGGACCAGATCGAGGGTTGTACCAGTAGGATCGACAGCACGCAGGGGGGACTTAGTCGATCCCCG
65 CGGACCAGACCGAGGGTTGCACCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCG
* * **
12818102 GCTTGCGCATTATTACTCTCCGACCGGG
130 ACTTGCGCATTACTACTCTCCGACCGAC
* * *
12818130 TCAACGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGCGTTCATTCTCAGTCTAAGAT
1 TCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGAT
** *** * * * *
12818195 CGGACTGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCGAGTTGGTCGCCG
65 CGGACCAGACCGAGGGTTGCACCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCG
* *
12818260 ACTTGCGCATT-CTACCTCTTCGATCGAC
130 ACTTGCGCATTACTA-CTCTCCGACCGAC
* * * * * * *
12818288 TGAGCGCCTGCACGCTCGTTTCGTGGATTGGCTTATGCATACGAAGTTCATTCCATGTCTAAG
1 TCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG
12818351 CATATAAAGT
Statistics
Matches: 181, Mismatches: 37, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
157 5 0.03
158 176 0.97
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (157 bp):
TCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATC
GGACCAGACCGAGGGTTGCACCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGA
CTTGCGCATTACTACTCTCCGACCGAC
Found at i:12818752 original size:26 final size:26
Alignment explanation
Indices: 12818715--12818767 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12818705 GTTAGCTTAG
*
12818715 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
12818741 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
12818767 G
1 G
12818768 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:12819093 original size:26 final size:26
Alignment explanation
Indices: 12819064--12819116 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12819054 GTTGGCTTAG
*
12819064 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12819090 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12819116 G
1 G
12819117 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12825579 original size:26 final size:26
Alignment explanation
Indices: 12825543--12825593 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12825533 GTTGACTTAG
*
12825543 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12825569 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
12825594 TGATCGGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12826081 original size:159 final size:159
Alignment explanation
Indices: 12825688--12826241 Score: 436
Period size: 159 Copynumber: 3.4 Consensus size: 159
12825678 AGCAGGGACA
* * * * *
12825688 CTGAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
** * * * * *
12825753 CATAGTCGAACCGAAGGTTGTGGCAGCGGGACCAGTAGCACACAGAAGGGGATCGGGCCGATCTT
66 CCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCACACAGAAGGGGACCGAGCCGATCTT
* * * *
12825818 CGGCTTGTGCATTATGCCTCTTCGGCCGG
131 CGGCTTGCGCATTATGCCTCTCCGACCAG
* * ** ** * *
12825847 CTCAGCGACCGCACGCTCGTTTCGTGGGTTGAATTATACATACAGAGTTAATTCCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* ** * * * * ** * *
12825911 -TCGGGATCGGACCGAGGGTTGAGGTAGCAGGATCGGTAGCACGTAG-GGGTGGACCGAGCTGAT
65 CCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCACACAGAAGG-GGACCGAGCCGAT
*
12825974 CTTCGGCTTGCGCATTCTGCCTCTCCGACCAG
128 CTTCGGCTTGCGCATTATGCCTCTCCGACCAG
* *
12826006 CTGAGCGCCCGCACGCTCGTTTCTTGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
12826071 CCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAACACGCAAAGGGGGAC
66 CCCAGTCGGACCGAGGGTTGTGGCAGCAGGA-C--CA---GTAGC-AC-ACA-G--AA-GGGGAC
** * * * *
12826136 C-AGGCTAATC-CCTGGCTTACGCATTATGCCTCTCCGGCGAG
119 CGA-GCCGATCTTC-GGCTTGCGCATTATGCCTCTCCGACCAG
* * * * *
12826177 CTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTCGGCATACGGAGTTCA-TCCCTAGTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG
12826241 C
65 C
12826242 ATACGAAGTT
Statistics
Matches: 304, Mismatches: 70, Indels: 30
0.75 0.17 0.07
Matches are distributed among these distances:
158 6 0.02
159 188 0.62
160 5 0.02
162 1 0.00
165 3 0.01
166 2 0.01
167 1 0.00
168 1 0.00
170 6 0.02
171 89 0.29
172 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCACACAGAAGGGGACCGAGCCGATCTT
CGGCTTGCGCATTATGCCTCTCCGACCAG
Found at i:12826244 original size:26 final size:26
Alignment explanation
Indices: 12826214--12826266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12826204 GTTGACTTCG
* *
12826214 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCATAGTCTAA
*
12826240 GCATACGAAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATCCATAGTCTAA
12826266 G
1 G
12826267 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCATAGTCTAA
Found at i:12828878 original size:26 final size:25
Alignment explanation
Indices: 12828856--12828925 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 25
12828846 TCCTAGATTG
*
12828856 GGAATGAACTCCGTATGCTTAGACT
1 GGAATGAACTCCGTATGCTTAGAAT
*
12828881 AGGAATGAACTCCGCATGCTTAGACAT
1 -GGAATGAACTCCGTATGCTTAGA-AT
*
12828908 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
12828926 CAAAGCCGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 38 0.97
27 1 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (25 bp):
GGAATGAACTCCGTATGCTTAGAAT
Found at i:12829065 original size:210 final size:210
Alignment explanation
Indices: 12828688--12829109 Score: 558
Period size: 210 Copynumber: 2.0 Consensus size: 210
12828678 TTCGGCTGGG
* * * *****
12828688 GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCATCAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCATCAAACAAGCATGCCACCACTCAG
* * * *
12828753 CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCCTGCGTACTGTCGATCC
66 CCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTACTGTCGATCC
* * * *
12828818 TGTTGCTGCAACCCTCTGTCTGATCCGATCCTAGATTGGGAATGAACTCCGTATGCTTAGACTAG
131 TATTGCTGCAACCCTCGGTCCGATCCAATCCTAGATTGGGAATGAACTCCGTATGCTTAGACTAG
12828883 GAATGAACTCCGCAT
196 GAATGAACTCCGCAT
* * *
12828898 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCGACCCATGAAACGAGCATGCCACCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCATCAAACAAGCATGCCACCACTCAG
* * * * *
12828963 TCGGTCGGAGAGGTAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTACTGTCGATCC
* * * *
12829028 TATT-ATCGCAACCCTCGGTCCGTTCTAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTA
131 TATTGCT-GCAACCCTCGGTCCGATCCAATCCTAGATTGGGAATGAACTCCGTATGCTTAGACTA
* *
12829092 GGGATGAACTCCGTAT
195 GGAATGAACTCCGCAT
12829108 GC
1 GC
12829110 CTAAGTCAAC
Statistics
Matches: 181, Mismatches: 30, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
209 1 0.01
210 180 0.99
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (210 bp):
GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCATCAAACAAGCATGCCACCACTCAG
CCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTACTGTCGATCC
TATTGCTGCAACCCTCGGTCCGATCCAATCCTAGATTGGGAATGAACTCCGTATGCTTAGACTAG
GAATGAACTCCGCAT
Found at i:12829817 original size:26 final size:27
Alignment explanation
Indices: 12829779--12829857 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 27
12829769 GGCTCAAAAT
*
12829779 CTTAGAC-TGGGAATTCAA-TTCGTATG
1 CTTAGACAT-GGAATTCAACTCCGTATG
*
12829805 CTTAGACATGGAA-TGAACTCCGTATG
1 CTTAGACATGGAATTCAACTCCGTATG
* *
12829831 CTTAGACATGGAA-TGAACTCCATATG
1 CTTAGACATGGAATTCAACTCCGTATG
12829857 C
1 C
12829858 CTAAACCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 3 0.06
26 44 0.92
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACATGGAATTCAACTCCGTATG
Found at i:12830025 original size:26 final size:26
Alignment explanation
Indices: 12829989--12830041 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12829979 CTGGTCTGAT
12829989 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12830015 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12830041 C
1 C
12830042 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12830146 original size:184 final size:184
Alignment explanation
Indices: 12829805--12830276 Score: 597
Period size: 184 Copynumber: 2.6 Consensus size: 184
12829795 AATTCGTATG
* * **
12829805 CTTAGACAT-GGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAACCAAC
1 CTTAGAC-TGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAAC
* * * * * *
12829868 CCACGAAACGTACATGCGGGCACTCAACCGATCGGAGAGGCAGAATACACAAGCCGGGGATCAGC
64 CCACGAAACGAACGTGCGGGCACTCAACCAACCGAAGAGGCAGAATACACAAGCCAGGGATCAGC
* * * * * * * *
12829933 CCGATCCTCTCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGGTCTGAT
129 CCGATCCCCCCTGCGTACTGCCAATCCTGCTACCACAACCCTCAATCTGGTCTGAT
*
12829989 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
** * * * * * **
12830054 ATAAAACGAACGTGCGGGCACTCAGCCAACCGAAGAGGTAGAATGCACAAGCTAGGGATCGGTTC
66 ACGAAACGAACGTGCGGGCACTCAACCAACCGAAGAGGCAGAATACACAAGCCAGGGATCAGCCC
* *
12830119 GGTCCCCCCTGCGTACTGCCAATCCTGCTACCGCAACCCTCAATCTGGTCTGAT
131 GATCCCCCCTGCGTACTGCCAATCCTGCTACCACAACCCTCAATCTGGTCTGAT
12830173 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
* ** * *
12830238 ACGAAACGAGCGTGCGGGTGCTCAACCGACCAAAGAGGC
66 ACGAAACGAACGTGCGGGCACTCAACCAACCGAAGAGGC
12830277 GGGATGCGCA
Statistics
Matches: 246, Mismatches: 40, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
183 2 0.01
184 244 0.99
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (184 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
ACGAAACGAACGTGCGGGCACTCAACCAACCGAAGAGGCAGAATACACAAGCCAGGGATCAGCCC
GATCCCCCCTGCGTACTGCCAATCCTGCTACCACAACCCTCAATCTGGTCTGAT
Found at i:12830209 original size:26 final size:26
Alignment explanation
Indices: 12830173--12830225 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12830163 CTGGTCTGAT
12830173 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12830199 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12830225 C
1 C
12830226 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12830922 original size:26 final size:26
Alignment explanation
Indices: 12830893--12830945 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12830883 CACTCAAAAT
12830893 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12830919 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12830945 C
1 C
12830946 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12832739 original size:26 final size:26
Alignment explanation
Indices: 12832710--12832762 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12832700 TTGATCCGAT
* *
12832710 CTTAGAC-TGGGAATTAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
12832736 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
12832762 C
1 C
12832763 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:12833214 original size:158 final size:157
Alignment explanation
Indices: 12832736--12833236 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 157
12832726 ACTCCGTATG
* * *
12832736 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
12832800 CCGATCGGAGAGGCAGAATGCGTAAACCAAGGATTGGCCCGGTCCCCCTTACGTGTTGTCGACCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCTAGGGA-TGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
*
12832865 TGCT-ATCGCAACCCTC-AGTCCGATCTGAT
129 TGCTGCT-GCAACCCTCGA-TCCGATCTGAT
* * * * *
12832894 CTTAGTCTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * ** * * * * * * * * * *
12832959 TGACCAAAAAGGCATAATGCGC-AGTTGGGGATCGACCCAGTCCACCTCTGTGTGCTGTAGGTCC
66 CGATCGGAGAGGCAGAATGCGCAAGCTAGGGAT-GGCCCGGTCC-CCCCTGCGTGCTGTCGATCC
* ** * **
12833023 CGCTGCCACAACCCTCGATCCG-GCTGGGG
129 TGCTGCTGCAACCCTCGATCCGATCT-GAT
* * * *
12833052 CTTAGACAT-GGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTTAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* ** *
12833116 CC-AGTCGGAGAGGCAGAATGCACAAGCTAGGGACTGGCTTGGTCCCCCCTGCGTGCTGCCGATC
65 CCGA-TCGGAGAGGCAGAATGCGCAAGCTAGGGA-TGGCCCGGTCCCCCCTGCGTGCTGTCGATC
12833180 CTGCTGCTGCAACCCTCGATCCGATCTGAT
128 CTGCTGCTGCAACCCTCGATCCGATCTGAT
*
12833210 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
12833237 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 70, Indels: 24
0.74 0.20 0.07
Matches are distributed among these distances:
156 1 0.00
157 17 0.07
158 225 0.86
159 17 0.07
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCTAGGGATGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCTGCAACCCTCGATCCGATCTGAT
Found at i:12833239 original size:26 final size:26
Alignment explanation
Indices: 12833210--12833262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12833200 CCGATCTGAT
12833210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12833236 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12833262 C
1 C
12833263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12833504 original size:159 final size:158
Alignment explanation
Indices: 12833248--12833538 Score: 368
Period size: 159 Copynumber: 1.8 Consensus size: 158
12833238 TAGACTGGGG
* * * *
12833248 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTCAGCCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTCAACCAGCCGGAGAGG
* * * * *
12833313 CATAATTCACAAGCTGGGGAATAGCCCGGTCCCCCTCTACATGCTGCCGATCCTACTGCCACAAC
66 CAGAATGCACAAGCTAGGGAATAGCCCAGTCCCCC-CTACATGCTGCCGATCCTACTACCACAAC
12833378 CCTCGATCCGGCTGGGGCTTAGATATGGA
130 CCTCGATCCGGCTGGGGCTTAGATATGGA
* * ** *
12833407 ATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACTAGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTCAACCAGCCGGAGAGG
* * * * * * *
12833472 CAGAATGCGCAAGCTAGGG-ATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAAC
66 CAGAATGCACAAGCTAGGGAAT-AGCCCAGTCCCCCCTACATGCTGCCGATCCTACTACCACAAC
12833536 CCT
130 CCT
12833539 TGGTCCGGTC
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 28 0.25
159 82 0.75
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTCAACCAGCCGGAGAGG
CAGAATGCACAAGCTAGGGAATAGCCCAGTCCCCCCTACATGCTGCCGATCCTACTACCACAACC
CTCGATCCGGCTGGGGCTTAGATATGGA
Found at i:12833685 original size:343 final size:342
Alignment explanation
Indices: 12833025--12833708 Score: 890
Period size: 343 Copynumber: 2.0 Consensus size: 342
12833015 GTAGGTCCCG
12833025 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACC
* * * * * * *
12833090 CACGAAATGGGCGTGCGGGCGCTTAGCCAGTCGGAGAGGCAGAATGCACAAGCTAGGGACTGGCT
66 CACGAAACGAGCGTGCAGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCTAGGGACTGGCC
** * * *
12833155 TGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGATCCGATCTGATCTTAGACTGG
131 CAGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGG
* * * *
12833220 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAG
* * * * * **
12833285 CGTGCAGGCACTCAGCCGGTCGGAGAGGCATAATTCACAAGCTGGGGAATAGCCCGGTCCCCCTC
261 CGTGCAGGCACTCAGCCGATCGAAAAGGCAGAATGCACAAGCCAGGGAATAGCCCGGTCCCCC-C
12833350 TACATGCTGCCGATCCTA
325 TACATGCTGCCGATCCTA
* * * *
12833368 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGATATGGAATGAACTTCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACC
* * *
12833433 CACGAAACGAGCGTGCAGGTGCTCAACTAGCCGGAGAGGCAGAATGCGCAAGCTAGGGA-TCGGC
66 CACGAAACGAGCGTGCAGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCTAGGGACT-GGC
* * * *
12833497 CCAGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTG
130 CCAGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTG
* *
12833562 GGAATGAACTCCGTATTCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACG
195 GGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAAC-
* ** ** *
12833626 AA-CGTGCGGGCGTTCAGCCGATCGAAAAGGCAGAATGCGTAAGCCAGGG-ATCGGCCCGGTCCC
258 AAGCGTGCAGGCACTCAGCCGATCGAAAAGGCAGAATGCACAAGCCAGGGAAT-AGCCCGGTCCC
* * *
12833689 CCCTGCGTGCTGTCGATCCT
322 CCCTACATGCTGCCGATCCT
12833709 GCTACTGTAA
Statistics
Matches: 292, Mismatches: 45, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
342 18 0.06
343 271 0.93
344 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (342 bp):
CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACC
CACGAAACGAGCGTGCAGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCTAGGGACTGGCC
CAGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAG
CGTGCAGGCACTCAGCCGATCGAAAAGGCAGAATGCACAAGCCAGGGAATAGCCCGGTCCCCCCT
ACATGCTGCCGATCCTA
Found at i:12833711 original size:184 final size:184
Alignment explanation
Indices: 12833395--12833761 Score: 529
Period size: 184 Copynumber: 2.0 Consensus size: 184
12833385 CCGGCTGGGG
* * * * * *
12833395 CTTAGATATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACGTGCAGGCGCTCAAC
* * * *
12833460 TAGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
66 GAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
* *
12833525 GCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATT
131 GCTACCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACGCCGTATT
* * * *
12833579 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAACGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACGTGCAGGCGCTCA-A
* * *
12833644 CGA-TCGAAAAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CGAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCC
* *
12833708 TGCTACTGTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACGCCGTAT
130 TGCTACCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACGCCGTAT
12833762 GCCTAAGTCA
Statistics
Matches: 161, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
184 159 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACGTGCAGGCGCTCAAC
GAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACGCCGTATT
Found at i:12834086 original size:26 final size:26
Alignment explanation
Indices: 12834050--12834102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12834040 CCGGACTGAT
*
12834050 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
* *
12834076 CTTAGATTGGGGATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
12834102 C
1 C
12834103 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATTCGTATG
Found at i:12834942 original size:26 final size:26
Alignment explanation
Indices: 12834903--12834953 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12834893 AGTTCGATCC
*
12834903 TAGACTGGGAATGAACTCCTTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
12834929 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
12834954 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:12835242 original size:171 final size:171
Alignment explanation
Indices: 12834926--12835295 Score: 412
Period size: 171 Copynumber: 2.2 Consensus size: 171
12834916 AACTCCTTAT
* * *
12834926 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGAGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGAGCTCAA
* * * **
12834991 CCAGCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCACTTCTGCATGCTACTGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCACCCCTGCATGCTACTGATC
* *
12835056 TCGCTGCCAGTCCTGCAGCCATAACCCTCGGTCCG-GCTGGG
131 TCGCTGCCAGTCCTGCAGCCACAACCCTCGGTCCGAGCT-GA
* **
12835097 GCTTAGACAT-GGCATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCA-CTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGG-AGCTC
* * * * *
12835160 AGCC-GACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCC-AGTCCCCCCCTGCGTGCTGCC
64 AACCAG-CCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGA-TCCACCCCTGCATGCT-AC
** * * *
12835223 T-ATC-CTGCTGCTGGTCCTGCAGCCGCGACCCTCGGTCCGATCTGA
126 TGATCTC-GCTGCCAGTCCTGCAGCCACAACCCTCGGTCCGAGCTGA
*
12835268 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
12835296 TTAGACATGG
Statistics
Matches: 167, Mismatches: 24, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
170 4 0.02
171 157 0.94
172 6 0.04
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.18
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGAGCTCAA
CCAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCACCCCTGCATGCTACTGATC
TCGCTGCCAGTCCTGCAGCCACAACCCTCGGTCCGAGCTGA
Found at i:12835298 original size:26 final size:26
Alignment explanation
Indices: 12835269--12835321 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12835259 CCGATCTGAT
*
12835269 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
12835295 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
12835321 C
1 C
12835322 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:12835482 original size:26 final size:26
Alignment explanation
Indices: 12835453--12835505 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12835443 CTGGTCCGAT
12835453 CTTAGACTGG-GAATGAAC-TCTGTATG
1 CTTAGACTGGAG-ATGAACTTC-GTATG
12835479 CTTAGACTGGAGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTTCGTATG
12835505 C
1 C
12835506 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTTCGTATG
Found at i:12835537 original size:184 final size:184
Alignment explanation
Indices: 12835228--12835578 Score: 492
Period size: 184 Copynumber: 1.9 Consensus size: 184
12835218 CTGCCTATCC
* * *
12835228 TGCTGCTGGTCCTGCAGCCGCGACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGCTGATCCTGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
12835293 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAGCGGGTGTGCGGGCGCTCA
66 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
12835358 GCCGACCGGAGAGGC-AGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCTTACG
131 ACCGACCAGAGAGGCAAG-ATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTACG
* * *
12835412 TGCTGCTGATCCTGCTA-CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGT
1 TGCTGCTGATCCTGC-AGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
* * *
12835476 ATGCTTAGAC-TGGAGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
65 ATGCTTAGACATGGA-ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
*
12835540 CAACCGACCAGAGGGGCAAGATGCGCAAGCCGGGGATCG
129 CAACCGACCAGAGAGGCAAGATGCGCAAGCCGGGGATCG
12835579 AACGGGTGGT
Statistics
Matches: 146, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
183 4 0.03
184 139 0.95
185 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.19
Consensus pattern (184 bp):
TGCTGCTGATCCTGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
ACCGACCAGAGAGGCAAGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTACG
Found at i:12836529 original size:26 final size:26
Alignment explanation
Indices: 12836493--12836545 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12836483 CCGATCCGAT
12836493 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
12836519 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12836545 C
1 C
12836546 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12836902 original size:26 final size:26
Alignment explanation
Indices: 12836873--12836925 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12836863 CCAGTCCGAT
12836873 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
12836899 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
12836925 C
1 C
12836926 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:12837198 original size:158 final size:157
Alignment explanation
Indices: 12836899--12837399 Score: 356
Period size: 158 Copynumber: 3.2 Consensus size: 157
12836889 ACTCCATATG
* * * *
12836899 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGAGTG--CTC
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCCTGC-AG-GCACTC
* ** * * * * * * * * *
12836961 AGCCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTG-TCGA
63 AGCCAGCCAAAAAGACAGAATACGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGCT-GA
* * **
12837025 TACTG-CTACTGCAACCCTCAGTCCGGTCCGAT
127 TCCTGTC-GCCACAACCCTC-GTCCGGTCCGAT
* *
12837057 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCACTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCAGGCACTCAGC
* * ** *
12837122 C-GACCAAAAAGGCATAATACGCAAGCCGGGGATTGGCCCGGTCCCCTTTACGTGCTG-TCGGT-
66 CAG-CCAAAAAGACAGAATACGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGCT-GATC
* ** **
12837184 CTCG-CAGCCACAACCCTCGATCCGATTGGGG
129 CT-GTC-GCCACAACCCTCG-TCCGGTCCGAT
* ** * * * ** *
12837215 CTTAGACAT-GGAATGAACTCCCCATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCAGGCACTCAG
* * * ** * *
12837279 CCAGTCGAAAAGACAGAATGCGCAAGTTGGGGATTGGCCCGGTCCCCCCTGCGTGTTGCTGATCC
65 CCAGCCAAAAAGACAGAATACGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGCTGATCC
*
12837344 TGTCGCCACAACCCTCGGTCCGGTCTGAT
130 TGTCGCCACAACCCTC-GTCCGGTCCGAT
* *
12837373 CTTAGATTGGAAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTTCGTATGC
12837400 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 252 0.94
159 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCAGGCACTCAGC
CAGCCAAAAAGACAGAATACGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGCTGATCCT
GTCGCCACAACCCTCGTCCGGTCCGAT
Found at i:12839059 original size:317 final size:317
Alignment explanation
Indices: 12838473--12839292 Score: 927
Period size: 317 Copynumber: 2.6 Consensus size: 317
12838463 CCCAGTCTAA
* * * * * * * * *
12838473 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGATGGTTACGGCACCAGGATCTGC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGGC
* * * * * * **
12838537 AGCACGCAGGAGGGACCAGGTCGAT-CCTGACTTGCGCATTCTACCTCTCCGACTGGTTGAGCAC
65 AGCACGCAGGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
* * * *
12838601 CCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
129 CCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCG
* * * *
12838666 GACTGAGGGTTGTGGCAGCGGGACCGACAACATGCAGAGAGGAGACTGGGTCGATCCCCGGCTTG
194 GACTGAAGGTTGTGGCAGCGAGACCGACAACACGCAGAGAGGAGACCGGGTCGATCCCCGGCTTG
* *
12838731 CGCATTATGCCT-TTAC-AGCCGACAT-AGTGCCCAAACGCTCGTTTCATGGGTTGACTTAG
259 CGCATTATGCCTCTT-CGA-CCGAC-TCAGCGCCCAAACGCTCATTTCATGGGTTGACTTAG
* * *
12838790 GCATACGAAGTTCATTCCCA-TATTAAGATCAGATCGAACTGAGGGTTGCGACAGCAGGATCGGC
1 GCATACGAAGTTCATTCCCAGT-CTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGGC
* * * * *
12838854 AGCACACAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGACTGAGCAT
65 AGCACGCAGGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
*
12838919 CCGCACGCCCATTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCG
129 CCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCG
* * * *
12838984 GA-TCGAAGGTTGTGGCAGCGAGACCGGCAGCACGCAGAG-GGGGACCGGGTCGATCCTCGGCTT
194 GACT-GAAGGTTGTGGCAGCGAGACCGACAACACGCAGAGAGGAGACCGGGTCGATCCCCGGCTT
* * ** * * *
12839047 GCGCATTATGCCTCTTCGACCGGCTCTGCGCCCGCATGCTCATTTCTTGGGTTGACTTAT
258 GCGCATTATGCCTCTTCGACCGACTCAGCGCCCAAACGCTCATTTCATGGGTTGACTTAG
* * * * *
12839107 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGATAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGGCA
* * * * * * *
12839172 ACACGCAAGGGGGACTGGGCCAATCCCCGGCTTGCACATTTTGCCTCTCCGATCGACTGAGCACC
66 GCACGCAGGGGGGAC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
** * * *
12839237 CGCACGCTTGTTTCGTGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
130 CGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
12839293 ATATGGAGTT
Statistics
Matches: 422, Mismatches: 72, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
316 3 0.01
317 293 0.69
318 126 0.30
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (317 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGGGGGGACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCC
GCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGA
CTGAAGGTTGTGGCAGCGAGACCGACAACACGCAGAGAGGAGACCGGGTCGATCCCCGGCTTGCG
CATTATGCCTCTTCGACCGACTCAGCGCCCAAACGCTCATTTCATGGGTTGACTTAG
Found at i:12839289 original size:158 final size:160
Alignment explanation
Indices: 12838567--12839293 Score: 625
Period size: 158 Copynumber: 4.6 Consensus size: 160
12838557 TCGATCCTGA
* * * * ** * *
12838567 CTTGCGCATTCTACCTCTCCGACTGGTTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTTCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * * *
12838632 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGACCGACAA
66 ATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACCGAGGGTTGTGACAGCAGGACCGACAA
* * *
12838696 CATGCAGAGAGGAGACTGGGTCGATCCCCGG
131 CACGCAGAG-GGGGACTGGGCCGATCCCCGG
** ** *
12838727 CTTGCGCATTATGCCT-TTAC-AGCCGACAT-AGTGCCCAAACGCTCGTTTCATGGGTTGACTTA
1 CTTGCGCATTATGCCTCTT-CGA-CCGAC-TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTA
* * * * * *
12838789 GGCATACGAAGTTCATTCCCATAT-TAAG-ATCAGATCGAACTGAGGGTTGCGACAGCAGGATCG
63 GGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGAACCGAGGGTTGTGACAGCAGGACCG
* * * *
12838852 GCAGCACACAG-GGGGGA-TCAGGCCGATCCCCGG
127 ACAACACGCAGAGGGGGACT-GGGCCGATCCCCGG
* * * * * * * *
12838885 CTTACGCATTCTGCCTCTTCGGCCGACTGAGCATCCGCACGCCCATTTCGTGGATTGGCTTAGGC
1 CTTGCGCATTATGCCTCTTCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * * * *
12838950 ATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGATCGAAGGTTGTGGCAGC-GAGACCGGCA
66 ATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACCGAGGGTTGTGACAGCAG-GACCGACA
* * * *
12839013 GCACGCAGAGGGGGACCGGGTCGATCCTCGG
130 ACACGCAGAGGGGGACTGGGCCGATCCCCGG
* ** * * * * * *
12839044 CTTGCGCATTATGCCTCTTCGACCGGCTCTGCGCCCGCATGCTCATTTCTTGGGTTGACTTATGC
1 CTTGCGCATTATGCCTCTTCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * *
12839109 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGTGATAGTAGGATCGACA
66 ATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGAACCGAGGGTTGTGACAGCAGGACCGACA
*
12839172 ACACGCA-AGGGGGACTGGGCCAATCCCCGG
130 ACACGCAGAGGGGGACTGGGCCGATCCCCGG
* * * * * * *
12839202 CTTGCACATTTTGCCTCTCCGATCGACTGAGCACCCGCACGCTTGTTTCGTGGTTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTTCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
*
12839267 ATACGAAGTTCATTCCATGTCTAAGCA
66 ATACGGAGTTCATTCCATGTCTAAGCA
12839294 TATGGAGTTC
Statistics
Matches: 441, Mismatches: 107, Indels: 39
0.75 0.18 0.07
Matches are distributed among these distances:
157 11 0.02
158 200 0.45
159 127 0.29
160 97 0.22
161 6 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (160 bp):
CTTGCGCATTATGCCTCTTCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACCGAGGGTTGTGACAGCAGGACCGACAA
CACGCAGAGGGGGACTGGGCCGATCCCCGG
Found at i:12840041 original size:26 final size:26
Alignment explanation
Indices: 12839989--12840041 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12839979 GTTGACTTAG
**
12839989 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
12840015 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
12840041 G
1 G
12840042 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:12840361 original size:26 final size:26
Alignment explanation
Indices: 12840332--12840384 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12840322 GTTGACTTAG
12840332 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12840358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12840384 G
1 G
12840385 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12840726 original size:171 final size:169
Alignment explanation
Indices: 12840358--12840726 Score: 382
Period size: 171 Copynumber: 2.2 Consensus size: 169
12840348 CCATGTCTAA
** *
12840358 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCAAGACCAGTA
1 GCATACGGAGTTCA-TCCCAGTCTAAGCCCAGACCAGACTGAGGGTTACGACAGCAAGACCAGCA
* * *
12840423 GTAGGATCAGCAGCACGCAGGGGGGACCAGGTCGATCTCCGATTTGCACATTCTGCCTCTCCGGG
65 GTAGGATCAGCAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTGCACATTATGCCTCTCCGGG
* * *
12840488 CGGCTGAGTGCCTGCATGCTCGTTTCGTGGCTTGGCTTAG
130 CGGCTGAGCGCCTGCATGCTCGTTTCATGGCTTGACTTAG
* * * * * ** * *
12840528 GTATACGAAGTTCATTCCATGTCTAAGCCCTGGCCAGACTGAGGGTTGTGGCAGCATGACCAGCA
1 GCATACGGAGTTCATCCCA-GTCTAAGCCCAGACCAGACTGAGGGTTACGACAGCAAGACCAGCA
* * ** * ** *
12840593 GTGGGATCGGCTA-CACGCAGAGGGGGACTGGGTTGATCCCCGACTTGTGCATTATGCCTGTCCG
65 GTAGGATCAGC-AGCACGCAG-GGGGGACCAGGTCGATCCCCGACTTGCACATTATGCCTCTCCG
** * *
12840657 GTTGGGTGAGCG-CTCGCATGCTCGTTTCATGGGTTGACTTAG
128 GGCGGCTGAGCGCCT-GCATGCTCGTTTCATGGCTTGACTTAG
* *
12840699 GCATATGGAGTTCATCCCCAATCTAAGC
1 GCATACGGAGTTCAT-CCCAGTCTAAGC
12840727 ATACGAGTTC
Statistics
Matches: 159, Mismatches: 35, Indels: 9
0.78 0.17 0.04
Matches are distributed among these distances:
169 4 0.03
170 66 0.42
171 86 0.54
172 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (169 bp):
GCATACGGAGTTCATCCCAGTCTAAGCCCAGACCAGACTGAGGGTTACGACAGCAAGACCAGCAG
TAGGATCAGCAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTGCACATTATGCCTCTCCGGGC
GGCTGAGCGCCTGCATGCTCGTTTCATGGCTTGACTTAG
Found at i:12840906 original size:354 final size:341
Alignment explanation
Indices: 12839960--12841067 Score: 1118
Period size: 354 Copynumber: 3.2 Consensus size: 341
12839950 GGCTGAGTGC
* *
12839960 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTTTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* ** * * ** *
12840025 TTCATTCCCAGCCTAAGATTGGACCGGA-TCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGG
66 TTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTACGGTAGTAGGATCGACAGCACGCAGG
* * * * * * *
12840089 GGGGATCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGGCCTCCTGAGCGCCCGCACGCCC
130 GGGGACCAGGTCGATCCCCGACTTGCACATTTTGCCTCTCCGGACTGCTGAGCGCCCGCACACCT
* * *
12840154 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAT-CTGGACCAATGG
195 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC-CC-TGCCGGACCGAGGG
* *
12840218 TTGTGGCAGCGGGACCGGCAGGACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC
258 TTGTGGCAGCAGGACCGGCAGGACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGC
*
12840283 CTCTCCGATCGGTTCAGCG
323 CTCTCCGATCGGGTCAGCG
* * *
12840302 CCGGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGG
1 CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGG
12840366 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCAAGACCAGTAGTAGGATC
64 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT-----A-C--G----GTAGTAGGATC
* * * * *
12840431 -AGCAGCACGCAGGGGGGACCAGGTCGATCTCCGATTTGCACATTCTGCCTCTCCGGGCGGCTGA
117 GA-CAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTGCACATTTTGCCTCTCCGGACTGCTGA
* * ** * * * *
12840495 GTGCCTGCA-TGCTCGTTTCGTGGCTTGGCTTAGGTATACGAAGTTCATTCCATGTCTAAGCCCT
181 GCGCCCGCACACCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
* * * *
12840559 GGCCAGACTGAGGGTTGTGGCAGCATGACCAGCAGTGGGATCGGCTACACGCAGAGGGGGA-CTG
245 -GCCGGACCGAGGGTTGTGGCAGCAGGA-C--C---GGCA--GG----ACGCAGAGGGGGATC-G
** * * * * *
12840623 GGTTGATCCCCGACTTGTGCATTATGCCTGTCCGGTTGGGTGAGCG
296 GGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGGTCAGCG
* * * *
12840669 CTCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATAC-GA
1 C-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
*
12840733 GTTCATTCCCTA-TCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
65 GTTCATTCCC-AGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATCGACAGCACGCAG
* *
12840797 GGGGGACCAGGTCGATCCCCGACTTGCTCATTTTTCCTCTCC-GACTAGCTGAGCGCCCGCACAC
129 GGGGGACCAGGTCGATCCCCGACTTGCACATTTTGCCTCTCCGGACT-GCTGAGCGCCCGCACAC
*
12840861 CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
193 CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCTGCCGGACCGAGG
* ** * * * * ** * *
12840926 GTTGTGGTAGTGGGACTGGCAGCACGCAGAGGGGGACCAGGCCGATAGCCGGCTTGCACATTATG
257 GTTGTGGCAGCAGGACCGGCAGGACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATG
** ** *
12840991 CCTCTTTGGCCGGCTCAGCG
322 CCTCTCCGATCGGGTCAGCG
* * *
12841011 CCTGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCACTCTAAG
1 CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
12841068 ATTAGACCGG
Statistics
Matches: 623, Mismatches: 102, Indels: 82
0.77 0.13 0.10
Matches are distributed among these distances:
341 1 0.00
342 98 0.16
343 87 0.14
344 1 0.00
346 1 0.00
348 3 0.00
349 1 0.00
351 1 0.00
353 4 0.01
354 136 0.22
355 136 0.22
356 1 0.00
358 2 0.00
360 1 0.00
361 4 0.01
363 2 0.00
366 39 0.06
367 101 0.16
368 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (341 bp):
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATCGACAGCACGCAGGG
GGGACCAGGTCGATCCCCGACTTGCACATTTTGCCTCTCCGGACTGCTGAGCGCCCGCACACCTG
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTGCCGGACCGAGGGTTG
TGGCAGCAGGACCGGCAGGACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTC
TCCGATCGGGTCAGCG
Found at i:12841177 original size:159 final size:155
Alignment explanation
Indices: 12840725--12841217 Score: 428
Period size: 159 Copynumber: 3.1 Consensus size: 155
12840715 CCCAATCTAA
* * *
12840725 GCATAC-GAGTTCATTCCCTATCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCC-ATCTAAGATCAGACCGGAC-GAGGGTTGCGGTAGTAGGATCGACA
* * * * *
12840789 GCACGCA-GGGGGGACCAGGTCGATCCCCGACTTGCTCATTTTTCCTCTCCGACT-AGCTGAGCG
64 GCACGCAGGGGGGGACCAGGTCGAT-CCCGGCTTGCACATTATTCCTCTCC-TCTCGGCTGAGCG
*
12840852 CCCGCACAC-CTGTTTCGTGGGTTGGCTTAG
127 -CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * *
12840882 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGTGGGA-CTG
1 GCATACGGAGTTCATTCCCA--TCTAAG-ATCAGACCGGA-CGAGGGTTGCGGTAGTAGGATC-G
* * * * * * *
12840944 GCAGCACGCAGAGGGGGACCAGGCCGATAGCCGGCTTGCACATTATGCCTCT-TTGGC-CGGCTC
61 ACAGCACGCAGGGGGGGACCAGGTCGAT-CCCGGCTTGCACATTATTCCTCTCCT--CTCGGCTG
* *
12841007 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAT
123 AGCGCC-GCACGCTCGTTTCGTGGGTTGGCTTAG
* **
12841041 GCATACGGAGTTCATTCCCACTCTAAGATTAGACCGGATCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCA-TCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGTAGGATCGACA
* * * * * *
12841106 GCACGTAGGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTTCCTCTCCTCTCGGTTGAGCTC
64 GCACGCAGGGGGGGACCAGGTCGATCC-CGGCTTGCACATTATTCCTCTCCTCTCGGCTGAGCGC
* * *
12841171 TCGCACGCTCATTTCATGGGTTGGCCTAG
128 -CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
12841200 GCATACGGAGGTCATTCC
1 GCATACGGAGTTCATTCC
12841218 ATGTCTAAGC
Statistics
Matches: 264, Mismatches: 53, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 50 0.19
159 198 0.75
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCATCTAAGATCAGACCGGACGAGGGTTGCGGTAGTAGGATCGACAGC
ACGCAGGGGGGGACCAGGTCGATCCCGGCTTGCACATTATTCCTCTCCTCTCGGCTGAGCGCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12841953 original size:26 final size:26
Alignment explanation
Indices: 12841923--12841975 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12841913 GTTGACTTAG
12841923 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12841949 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12841975 G
1 G
12841976 ATCGGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12842475 original size:18 final size:18
Alignment explanation
Indices: 12842449--12842490 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
12842439 ACACCCTGGG
*
12842449 CGGGCGTGCCAGGCACAT
1 CGGGTGTGCCAGGCACAT
12842467 CGGGTGTGCCAGGCACAT
1 CGGGTGTGCCAGGCACAT
*
12842485 CAGGTG
1 CGGGTG
12842491 CACCAACAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.17, C:0.29, G:0.40, T:0.14
Consensus pattern (18 bp):
CGGGTGTGCCAGGCACAT
Found at i:12848617 original size:26 final size:26
Alignment explanation
Indices: 12848587--12848639 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12848577 GTTGACTTAG
12848587 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12848613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12848639 G
1 G
12848640 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12848967 original size:159 final size:158
Alignment explanation
Indices: 12848621--12848976 Score: 344
Period size: 159 Copynumber: 2.2 Consensus size: 158
12848611 AAGCATACGG
* *
12848621 AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGTAGCAGAATCGACAGCACGCAG
* ** * * * *
12848686 GGGGAACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGACCGGCTGAGCGCCTGCACGTC
66 GGGGAACCAGGCCGATCCCCAGCTTAAGCATTATACCTCTCTGACCGACTCAGCGCCCGCACGTC
* *
12848751 CGTTCCGTGGGTTAGCTTAGGCATAAGG
131 CGTTCCATGGGTTAGCTTAGGCATAAGA
* ** * * * * *
12848779 AGTTCATT-CCATGTCTAGGCCCCAGTCAGACCGAGGGTTGTGGTAGCAGAATCGACAGTACGTA
1 AGTTCATTCCCA-GTCTAAGATCAAATCAGACCGAGGGTTGCGGTAGCAGAATCGACAGCACGCA
* * * * * * *
12848843 GAGGGGGACCAGGCCGATCCTCGGCTTAAGCATTATGCCTCT-TCGATCGACTCAGTGCCCGTAC
65 G-GGGGAACCAGGCCGATCCCCAGCTTAAGCATTATACCTCTCT-GACCGACTCAGCGCCCGCAC
* *
12848907 G-CTCGTTTCATGGGTT-GACTTATGCATACA-A
128 GTC-CGTTCCATGGGTTAG-CTTAGGCATA-AGA
** *
12848938 AGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTT
1 AGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTT
12848977 ACGACAGCAG
Statistics
Matches: 156, Mismatches: 35, Indels: 13
0.76 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 54 0.35
159 95 0.61
160 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGTAGCAGAATCGACAGCACGCAG
GGGGAACCAGGCCGATCCCCAGCTTAAGCATTATACCTCTCTGACCGACTCAGCGCCCGCACGTC
CGTTCCATGGGTTAGCTTAGGCATAAGA
Found at i:12849145 original size:158 final size:156
Alignment explanation
Indices: 12848647--12849154 Score: 441
Period size: 158 Copynumber: 3.2 Consensus size: 156
12848637 AAGATCAAAC
* * * *
12848647 CAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGAACCAGGTCGATCCCCAGCTTG
1 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGG-ACCAGGTCGATCCTCGGCTTA
** * * * * * *
12848712 CGCATTCTACCTCTCTGACCGGCTGAGCGCCTGCACGTCCGTTCCGTGGGTTAGCTTAGGCATA-
65 CGCATTCTATGTCTTTGACCGGCTGAGTGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAC
*
12848776 AGGAGTTCATTCCATGTCTAGGCCCCAGT
130 A-GAGTTCATTCCATGTCTAAG-CCCAGT
* * * * * *
12848805 CAGACCGAGGGTTGTGGTAGCAGAATCGACAGTACGTAGAGGGGGACCAGGCCGATCCTCGGCTT
1 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG--CAGGGGGACCAGGTCGATCCTCGGCTT
* * * * * * * * * *
12848870 AAGCA-T-TATGCCTCTTCGATCGACTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTATGCA
64 ACGCATTCTATG--TCTTTGACCGGCTGAGTGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCA
* ** *
12848933 TACAAAGTTCATTCCCA-GTCTAAGATCGGAT
127 TACAGAGTTCATT-CCATGTCTAAGCCCAG-T
* * * * * * * * *
12848964 CAGATCGAGGGTTACGACAGCAGGATCAATAGCACGCACGGAGGATCAAGTCGATCCTTGGCTTA
1 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-GGGGGACCAGGTCGATCCTCGGCTTA
* * *
12849029 CGCATTCTATGTCTTTGGCCGGCTGAGTACCCACACGTTCGTTTCGTGGGTTGGCTTAGGCATAC
65 CGCATTCTATGTCTTTGACCGGCTGAGTGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAC
*
12849094 AGAGTTCATTCCATGTCTAAGCCCTTGT
130 AGAGTTCATTCCATGTCTAAGCCC-AGT
* *
12849122 CAGACAGAGGGTTGTGGCAGCAGGA-CTGACAGC
1 CAGACCGAGGGTTGCGGCAGCAGGATC-GACAGC
12849155 GAGATCGGCA
Statistics
Matches: 267, Mismatches: 70, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 7 0.03
158 144 0.54
159 102 0.38
160 14 0.05
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACCAGGTCGATCCTCGGCTTAC
GCATTCTATGTCTTTGACCGGCTGAGTGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACA
GAGTTCATTCCATGTCTAAGCCCAGT
Found at i:12849308 original size:26 final size:26
Alignment explanation
Indices: 12849272--12849324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12849262 GTTGACTTAG
*
12849272 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12849298 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12849324 G
1 G
12849325 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12849822 original size:26 final size:26
Alignment explanation
Indices: 12849772--12849824 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12849762 GTTGGCTTAG
* **
12849772 GCATACGGAGTTCATTTCATTTCTAA
1 GCATACGGAGTTCATTCCAGATCTAA
*
12849798 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCAGATCTAA
12849824 G
1 G
12849825 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGATCTAA
Found at i:12854112 original size:159 final size:159
Alignment explanation
Indices: 12853831--12854453 Score: 527
Period size: 159 Copynumber: 3.9 Consensus size: 159
12853821 CCGGTTCAGT
* ***
12853831 GCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTTTAGTCTAAGATC-GAA
1 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-A
* * * * * * *** * * **
12853895 CCAGACCGAGGGTTGCGATAGCATGATCGATAGCACCCAAAGAGGGAATGGGCTGGTCCTTGACT
65 CCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACT
**
12853960 TGCGCATTCTGCCTCTCCAATCAGCTGAGC
130 TGCGCATTCTGCCTCTCCGGTCAGCTGAGC
* * *
12853990 ACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
1 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
* * ** * * * *
12854055 CAGATCGAGGGTTGCGGTAGCAGGATCAACAGCACATAGGGGGGGACTAGGCCGGTCCCCAACTT
66 CAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTT
* * * * * *
12854120 GTGCATTTTGCCTTTCTGGCCAACTGAGC
131 GCGCATTCTGCCTCTCCGGTCAGCTGAGC
* * * * * * * **
12854149 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATT-CAATGTCTAAGCCCCAG
1 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAG
* * ** * * * ** *
12854213 -CCAGACCGAGGGTTGTGGCAGTGGGACCGATAGCATGCAGAGGAAGACCGGGCCCGATCCCC-A
64 ACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGG-CCGATCCCCGA
* * * *
12854276 GCTTGTGCATTATGCCTCTCCGGTCGGCTTAGC
128 -CTTGCGCATTCTGCCTCTCCGGTCAGCTGAGC
* * * *
12854309 GCCCGAACGTTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCTGAC
1 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * * *
12854374 CAAACTAAGGGTTGCGGTAGCAGGATCGACAGCACGTAG-GGGGGACCAGACCGATCCCTGGCTA
66 CAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTT
12854438 GCGCATTCTGCCTCTC
131 GCGCATTCTGCCTCTC
12854454 TGATCAACCT
Statistics
Matches: 356, Mismatches: 100, Indels: 17
0.75 0.21 0.04
Matches are distributed among these distances:
158 26 0.07
159 217 0.61
160 111 0.31
161 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTT
GCGCATTCTGCCTCTCCGGTCAGCTGAGC
Found at i:12854547 original size:26 final size:26
Alignment explanation
Indices: 12854511--12854563 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12854501 GTTGACTTAG
12854511 GCATACAGAGTCCATCCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
* * *
12854537 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
12854563 G
1 G
12854564 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCCAGTCTAA
Found at i:12854883 original size:26 final size:26
Alignment explanation
Indices: 12854849--12854901 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12854839 GTTGGCTTAG
*
12854849 GCATGCAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
12854875 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
12854901 G
1 G
12854902 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:12855885 original size:159 final size:159
Alignment explanation
Indices: 12855665--12856068 Score: 440
Period size: 159 Copynumber: 2.5 Consensus size: 159
12855655 TCGACTAGTG
* * * * **
12855665 CATTCTGCCTCTCCGGTCGACTGAGCGCCCGTACGCCCGTTTCATGAGTTGGCTTAGGCATAGGG
1 CATTATGCCTCTCCGGTCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
* * * *
12855730 AGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGG-CAGCA-CA
66 AGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGA-CGGACAGCAGCA
*
12855792 CAGACGGGGACCGAGCCGATCCCCGACTTGCG
130 C-G-CGGGGACCGAGCCGATCCCCGACTTGCA
* * * * * * *
12855824 TATTATGCCTCTTCGGTTGACTTAGCACCCGTACGCTCGTTTCATGGGTTGACTTATGCATACTG
1 CATTATGCCTCTCCGGTCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
* * *
12855889 AGTTCATTCTCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATGGACAGCATGC
66 AGTTCATTC-CATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGACGGACAGCA-GC
* * * *
12855952 ACGGGGGGATCGGGCCGATCCCCGGCTTGCA
129 ACGCGGGGACCGAGCCGATCCCCGACTTGCA
* * * * * * *
12855983 CATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGTTCATTTCGTAGGTTGGCTTAGGCATACAG
1 CATTATGCCTCTCCGGTCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
12856048 AGTTCATTCCATGTCTAAGCA
66 AGTTCATTCCATGTCTAAGCA
12856069 TACGGAGTTC
Statistics
Matches: 200, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
158 6 0.03
159 187 0.94
160 4 0.02
161 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
CATTATGCCTCTCCGGTCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
AGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGACGGACAGCAGCAC
GCGGGGACCGAGCCGATCCCCGACTTGCA
Found at i:12856076 original size:26 final size:26
Alignment explanation
Indices: 12856040--12856092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12856030 GTTGGCTTAG
12856040 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12856066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12856092 G
1 G
12856093 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12857647 original size:26 final size:26
Alignment explanation
Indices: 12857616--12857668 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12857606 GTTGACTTAG
* *
12857616 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12857642 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12857668 G
1 G
12857669 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12857949 original size:159 final size:158
Alignment explanation
Indices: 12857649--12858145 Score: 427
Period size: 158 Copynumber: 3.1 Consensus size: 158
12857639 TAAGCATACA
* * * * * *
12857649 GAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGC-GACAGCAGGATCGGCAGCAC
1 GAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAG-CAACAAGACCGACAGCAC
* * * * * * * * *
12857711 ACAGGGGGGATCGGGCCGACCCCCGACTTGCACTTTCTGCCTCTCCAGCCAGCTGAGCGCCTGCA
64 GCAAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-GGCGGCTGAGCGCCCGCA
* * *
12857776 CGCCCATTTTGTGGGTTGGCTTAGGCATAAG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATAAG
* * ** ** **** *
12857807 AAGTTCATTCCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGCAGTGGGACC-AGCAGCATG
1 GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAACAAGACCGA-CAGCACG
* * *
12857870 CAGAGGGGGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCA
65 CA-AGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCGCCCGCA
* * *
12857935 CGCTCGTTTCGTGGGTTGACTTAGGTATATG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATAAG
* * * * *
12857966 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCAGTAACAAGATCGATAGCACG
1 GAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAACAAGACCGACAGCACG
* * * *
12858029 CAAGGGGGA-CAGGGCTGATCCCC-AGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCACCCGC
65 CAAGGGGGATC-GAGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCGCCCGC
*
12858092 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAAG
*
12858124 GACTTCATTCCATGTCTAAGCA
1 GAGTTCATTCCATGTCTAAGCA
12858146 TACGGAGTTC
Statistics
Matches: 270, Mismatches: 55, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
157 9 0.03
158 139 0.51
159 118 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAACAAGACCGACAGCACGC
AAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATAAG
Found at i:12858787 original size:26 final size:26
Alignment explanation
Indices: 12858758--12858810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12858748 GTTGACTTAG
*
12858758 GCATACAGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
12858784 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12858810 G
1 G
12858811 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12859352 original size:26 final size:26
Alignment explanation
Indices: 12859323--12859375 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12859313 GTGGACTTAG
*
12859323 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12859349 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12859375 G
1 G
12859376 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12859835 original size:158 final size:155
Alignment explanation
Indices: 12859464--12860132 Score: 380
Period size: 158 Copynumber: 4.2 Consensus size: 155
12859454 CTGCCTCTCT
* * **
12859464 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCGAACTGAAGGTTGTGGCAG
1 GGTTGGCTTAGGCATAGGGAGTTCATT-CATGTCTAAGCCT-AGCCGGAC-GAGGGTTGCAGCAG
* * * * * * *
12859529 TGGGACTGATAGCACGCAAAGGGGGTCGAGCCGATCCCTGGCTTACGTATTATGCCTCTTCGATC
63 TAGGACTGACAACACGCAAAGGGGGACCAGCCGATCCCCGGCTTACGCATTATGCCTCTTCGATC
* * *
12859594 GGCTCAGTACCCGTACGCTCGTTTCGTT
128 GGCTCAGCACCCGCACGCTCGTTTCGTG
* * * * * ** * *
12859622 GGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATTGGACCAGATCGAGGGTTGCAGCAG
1 GGTTGGCTTAGGCATAGGGAGTTCATTCAT-GTCTAAGCCTAG-CCGGA-CGAGGGTTGCAGCAG
* * * * *
12859687 TAGGA-TCGACAACATGC-AGGGGGGACCAGATCGATCCCCGGCTTACGCATTCTGCCTCTCTGG
63 TAGGACT-GACAACACGCAAAGGGGGACCAG-CCGATCCCCGGCTTACGCATTATGCCTCT-TCG
* *
12859750 CT-GGCTGAGCACCCGCACGC-CTGTTTCGTG
125 ATCGGCTCAGCACCCGCACGCTC-GTTTCGTG
**
12859780 GGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCGGACAGAGGGTTGTGGCAG
1 GGTTGGCTTAGGCATAGGGAGTTCATT-CATGTCTAAG-CCTAGCCGGAC-GAGGGTTGCAGCAG
** * ** * * * ** * * * * **
12859845 CGGGACCGGTAGCACGCAGAGGGGGACTAGGCCGATCCTTGACTTGCACATTATGCCTCTCCCCT
63 TAGGACTGACAACACGCAAAGGGGGACCA-GCCGATCCCCGGCTTACGCATTATGCCTCTTCGAT
** *
12859910 CGGCTCAGTGCCCGCACGCTCGTTTTGTG
127 CGGCTCAGCACCCGCACGCTCGTTTCGTG
* ** * * ** * * * *
12859939 GGTTGACTTAGGCATACAGACTTCATTCCTAGTCTAAGATTGGACCAGACCGAAGGTTACAGCAG
1 GGTTGGCTTAGGCATAGGGAGTTCATTCAT-GTCTAAGCCTAG-CCGGA-CGAGGGTTGCAGCAG
* * * ** * * * * * *
12860004 TAGGA-TCGAGAGCACG--TAGGGAGGACTGGGCTGATCCCCGGTTTACGTATTCTGCCTCTCCA
63 TAGGACT-GACAACACGCAAAGGG-GGAC-CAGCCGATCCCCGGCTTACGCATTATGCCTCTTCG
* * * *
12860066 ATCGGTTGAGTACCCGCACGCTCGTTTCTTG
125 ATCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * *
12860097 GGTTGGCTTAGGCATACGGACTTTATTCCATGTCTA
1 GGTTGGCTTAGGCATAGGGAGTTCATT-CATGTCTA
12860133 CGCATACGGA
Statistics
Matches: 383, Mismatches: 106, Indels: 44
0.72 0.20 0.08
Matches are distributed among these distances:
157 19 0.05
158 245 0.64
159 116 0.30
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (155 bp):
GGTTGGCTTAGGCATAGGGAGTTCATTCATGTCTAAGCCTAGCCGGACGAGGGTTGCAGCAGTAG
GACTGACAACACGCAAAGGGGGACCAGCCGATCCCCGGCTTACGCATTATGCCTCTTCGATCGGC
TCAGCACCCGCACGCTCGTTTCGTG
Found at i:12860042 original size:317 final size:316
Alignment explanation
Indices: 12859464--12860132 Score: 835
Period size: 317 Copynumber: 2.1 Consensus size: 316
12859454 CTGCCTCTCT
*
12859464 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCGAACTGAAGGTTGTGGCAG
1 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCGAACAGAAGGTTGTGGCAG
* * * * ** * *
12859529 TGGGACTGATAGCACGCAAAGGGGGTCGAGCCGATCCCTGGCTTACGTATTATGCCTCTTCGATC
66 CGGGACCGATAGCACGCAAAGGGGGACGAGCCGATCCCTGACTTACACATTATGCCTCTCCCATC
* * * *
12859594 GGCTCAGTACCCGTACGCTCGTTTCGTTGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAA
131 GGCTCAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAACTTCATTCCTAGTCTAA
* * * * *
12859659 GATTGGACCAGATCGAGGGTTGCAGCAGTAGGATCGACAACATGCAGGGGGGACCAGATCGATCC
196 GATTGGACCAGACCGAAGGTTACAGCAGTAGGATCGACAACACGCAGGGAGGACCAGATCGATCC
***
12859724 CCGGCTTACGCATTCTGCCTCT-CTGGCTGGCTGAGCACCCGCACGC-CTGTTTCGTG
261 CCGGCTTACGCATTCTGCCTCTCCAATC-GGCTGAGCACCCGCACGCTC-GTTTCGTG
* * *
12859780 GGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCC-CTAGCCGGACAGAGGGTTGTGGCA
1 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTC-AGCCGAACAGAAGGTTGTGGCA
* * * * * *
12859844 GCGGGACCGGTAGCACGCAGAGGGGGACTAGGCCGATCCTTGACTTGCACATTATGCCTCTCCCC
65 GCGGGACCGATAGCACGCAAAGGGGGACGA-GCCGATCCCTGACTTACACATTATGCCTCTCCCA
* *
12859909 TCGGCTCAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC-AGACTTCATTCCTAGTC
129 TCGGCTCAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-ACTTCATTCCTAGTC
* * * * **
12859973 TAAGATTGGACCAGACCGAAGGTTACAGCAGTAGGATCGAGAGCACGTAGGGAGGA-CTGGGCTG
193 TAAGATTGGACCAGACCGAAGGTTACAGCAGTAGGATCGACAACACGCAGGGAGGACCAGATC-G
* * * * *
12860037 ATCCCCGGTTTACGTATTCTGCCTCTCCAATCGGTTGAGTACCCGCACGCTCGTTTCTTG
257 ATCCCCGGCTTACGCATTCTGCCTCTCCAATCGGCTGAGCACCCGCACGCTCGTTTCGTG
* * *
12860097 GGTTGGCTTAGGCATACGGACTTTATTCCATGTCTA
1 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
12860133 CGCATACGGA
Statistics
Matches: 300, Mismatches: 47, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
315 1 0.00
316 86 0.29
317 210 0.70
318 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (316 bp):
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCGAACAGAAGGTTGTGGCAG
CGGGACCGATAGCACGCAAAGGGGGACGAGCCGATCCCTGACTTACACATTATGCCTCTCCCATC
GGCTCAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAACTTCATTCCTAGTCTAA
GATTGGACCAGACCGAAGGTTACAGCAGTAGGATCGACAACACGCAGGGAGGACCAGATCGATCC
CCGGCTTACGCATTCTGCCTCTCCAATCGGCTGAGCACCCGCACGCTCGTTTCGTG
Found at i:12861078 original size:158 final size:157
Alignment explanation
Indices: 12860590--12861158 Score: 487
Period size: 158 Copynumber: 3.6 Consensus size: 157
12860580 CGGACTGATA
* * * * * * *
12860590 CTCGGCTTGCGCATTCTACCTCTTTGGTCGGCTGAGCGCCTGCATGCCTGTTTCGTGGGTTGGTT
1 CTCGACTTACGCATTATGCCTCTCTGGTCGGCTCAGCGCCTGCATGCCTGTTTCGTGGGTTGGCT
* * * * *
12860655 TAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTG
66 TAGGCATAGGGAGTTCATTCCATGTCTAA-CCCTAGTCGGACCGA-GGTT-TGGCAGTGGGACCG
* * *
12860720 ACAGCACGTAGAGAGGGATCGGGCCGATCC
128 ACAGCACGTAGAGGGGGACCAGGCCGATCC
* * * * *
12860750 CTCG-CTTACGCATTATGCCTCT-TCAGTCAGCTCAGTGCCCGCACGCTCAT-TTT-GTGGGTTG
1 CTCGACTTACGCATTATGCCTCTCT-GGTCGGCTCAGCGCCTGCATGC-C-TGTTTCGTGGGTTG
* * * ** * * *
12860811 ACTTATGCATACGGAGTTCATTCCCA-GTCTAA-GATCAGATCAGAACGAGGGTT-GCAGTAGCA
63 GCTTAGGCATAGGGAGTTCATT-CCATGTCTAACCCT-AG-TCGGACCGAGGTTTGGCAGT-G--
* * * *
12860873 GGATCGACAGCACGCAG-GGGGGACAAGGCCAATCC
122 GGACCGACAGCACGTAGAGGGGGACCAGGCCGATCC
* * * * *
12860908 C-CGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCTGCATGCCTGTTTCATGGGCTGGCT
1 CTCGACTTACGCATTATGCCTCTCTGGTCGGCTCAGCGCCTGCATGCCTGTTTCGTGGGTTGGCT
*
12860972 TAGGCATAGGGAGTTCATTGCATGTCTAACCCTAGTCGGACCGATGGTTATGGCAGTGGGACCGA
66 TAGGCATAGGGAGTTCATTCCATGTCTAACCCTAGTCGGACCGA-GGTT-TGGCAGTGGGACCGA
*
12861037 CAGCACGTAGAGGGGGACCAGGTCGA-CC
129 CAGCACGTAGAGGGGGACCAGGCCGATCC
* * * * * *
12861065 CTCGACTTACGCATTATGCCTCTCCGGTCGGTTCAGCGCCTGTA-GGCTCATTTCGTGGGTTGAC
1 CTCGACTTACGCATTATGCCTCTCTGGTCGGCTCAGCGCCTGCATGCCT-GTTTCGTGGGTTGGC
**
12861129 TTAGGCATACAGAGTTCATTCCCA-GTCTAA
65 TTAGGCATAGGGAGTTCATT-CCATGTCTAA
12861159 GATCAGACCA
Statistics
Matches: 319, Mismatches: 68, Indels: 46
0.74 0.16 0.11
Matches are distributed among these distances:
156 5 0.02
157 38 0.12
158 171 0.54
159 88 0.28
160 16 0.05
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
CTCGACTTACGCATTATGCCTCTCTGGTCGGCTCAGCGCCTGCATGCCTGTTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAACCCTAGTCGGACCGAGGTTTGGCAGTGGGACCGACA
GCACGTAGAGGGGGACCAGGCCGATCC
Found at i:12861291 original size:159 final size:158
Alignment explanation
Indices: 12860595--12861317 Score: 534
Period size: 159 Copynumber: 4.6 Consensus size: 158
12860585 TGATACTCGG
* ** * * * **
12860595 CTTGCGCATTCTACCTCTTTGGTCGGCTGAGCGCCTGCATGC-CTGTTTCGTGGGTTGGTTTAGG
1 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGG
* * ** * * * * * *
12860659 CATAGGGAGTTCATTCCATGTTTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CTGAC
65 CATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGAACGAGGGTTGCGACAGCAGGATC-GAC
* * *
12860722 AGCACGTAGAGAGGGATC-GGGCCGATCCCTCG-
128 AGCACGTAG-GGGGGA-CAAGGTCGATCCC-CGA
* * * * * * * * *
12860754 CTTACGCATTATGCCTCTTCAGTCAGCTCAGTGCCCGCACGCTCATTTTGTGGGTTGACTTATGC
1 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
*
12860819 ATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGAACGAGGGTTGC-AGTAGCAGGATCGACA
66 ATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGAACGAGGGTTGCGA-CAGCAGGATCGACA
* * *
12860882 GCACGCAGGGGGGACAAGGCCAATCCCCGA
129 GCACGTAGGGGGGACAAGGTCGATCCCCGA
* * * * * * *
12860912 CTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCTGCATGC-CTGTTTCATGGGCTGGCTTAGG
1 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGG
* * ** * * * ** * ** *
12860976 CATAGGGAGTTCATTGCATGTCTAA-CCCTAG-TCGGACCGATGGTTATGGCAGTGGGACCGACA
65 CATACGGAGTTCATTCCATGTCTAAGATC-AGATCAGAACGAGGGTTGCGACAGCAGGATCGACA
*
12861039 GCACGTAGAGGGGGACCAGGTCGA-CCCTCGA
129 GCACGTAG-GGGGGACAAGGTCGATCCC-CGA
* * * * * * *
12861070 CTTACGCATTATGCCTCTCCGGTCGGTTCAGCGCCTGTAGGCTCATTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * * *
12861135 ATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGATAG
66 ATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGAACGAGGGTTGCGACAGCAGGATCGACAG
** *
12861199 CACGTAGGTGGGGACTGGGTCGATCCCCGG
130 CACGTAGG-GGGGACAAGGTCGATCCCCGA
* ** ** * * * *
12861229 CTTGCGCATTCTACCTCTCCGACCAACTGAGGGCCCGCACGCTCGTTTCCTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
12861294 ATACGGAGTTCATTCCATGTCTAA
66 ATACGGAGTTCATTCCATGTCTAA
12861318 AGATATGAAG
Statistics
Matches: 433, Mismatches: 111, Indels: 40
0.74 0.19 0.07
Matches are distributed among these distances:
157 38 0.09
158 176 0.41
159 211 0.49
160 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCATGTCTAAGATCAGATCAGAACGAGGGTTGCGACAGCAGGATCGACAGC
ACGTAGGGGGGACAAGGTCGATCCCCGA
Found at i:12861695 original size:26 final size:26
Alignment explanation
Indices: 12861659--12861711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12861649 GTTGACTTAG
*
12861659 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
12861685 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12861711 G
1 G
12861712 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12862165 original size:158 final size:156
Alignment explanation
Indices: 12861685--12862186 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 156
12861675 CTCAGTCTAA
* * * *
12861685 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGACAGTAGCATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTGCGACAGTAGGAACGAC
** * * * * * * *
12861749 AGCACACAGAGGGGATCGGGCTAATCCCTGGCTTGTGCATTCTGCCTCTCTGGTGGGTTGAGCGC
65 AGCATGCAGGGGGGA-CGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGC
*
12861814 CCGCACGCCCGTTTCGTTGGTTGGCTTAG
129 CCGCACGCTCGTTTCG-TGGTTGGCTTAG
* * ** * * * * *
12861843 GGATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGATCGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGCGACAGTAGGAACGA
* * * *
12861906 CAGCATGCAGAGGGGGACGGGGTCGATCCCCGGCTTGCGCATTATACCTCT-TCGATCGGCTCAG
64 CAGCATGCAG-GGGGGACGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCT-GATCGGCTGAG
* * * * *
12861970 CACCCGCACGCTTGTTTCATGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGT-GGTTGGCTTAG
* ** * *
12862002 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGATCGAGGGTTGCGAAAGTAGGAACGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGTAGGAACGACA
* * * *
12862067 GCATGTAGGGGGGACCGAGCTGATCCCCGGCTTGCACATTCTGCCTCTCTGATCAGCTGAGCGCC
66 GCATGCAGGGGGGA-CGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCC
* *
12862132 CGTACGCTCGGTTCGTGAGTTGGCTTAG
130 CGCACGCTCGTTTCGTG-GTTGGCTTAG
12862160 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12862187 CATACAGAGT
Statistics
Matches: 270, Mismatches: 61, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 142 0.53
159 118 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGTAGGAACGACA
GCATGCAGGGGGGACGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGTTGGCTTAG
Found at i:12865403 original size:21 final size:21
Alignment explanation
Indices: 12865377--12865421 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
12865367 TTTGGCTCAT
12865377 CTTGGACTCCTAGTCACGATC
1 CTTGGACTCCTAGTCACGATC
12865398 CTTGGACTCCTAGTCACGATC
1 CTTGGACTCCTAGTCACGATC
12865419 CTT
1 CTT
12865422 CCCATTGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.31
Consensus pattern (21 bp):
CTTGGACTCCTAGTCACGATC
Found at i:12866411 original size:26 final size:26
Alignment explanation
Indices: 12866375--12866427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12866365 GTTGACTTAG
*
12866375 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
12866401 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12866427 G
1 G
12866428 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12866927 original size:26 final size:26
Alignment explanation
Indices: 12866875--12866927 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12866865 GTTGGCTTAG
* *
12866875 GCATACAGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCACGTCTAA
* *
12866901 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
12866927 G
1 G
12866928 GTCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:12868511 original size:26 final size:26
Alignment explanation
Indices: 12868475--12868527 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12868465 GTTGACTTAG
*
12868475 GCATACGGAGTTAATCCCCAATGTAA
1 GCATACGGAGTTAATCCCCAATCTAA
* * *
12868501 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTAATCCCCAATCTAA
12868527 G
1 G
12868528 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAATCTAA
Found at i:12868810 original size:159 final size:158
Alignment explanation
Indices: 12868535--12869005 Score: 539
Period size: 160 Copynumber: 3.0 Consensus size: 158
12868525 AAGATCGGAT
* * * *
12868535 CGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGC-AGGGGGGACTGGGTCGATCCTCGACTT
1 CGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTCGATCCTCGACTT
* * * * * * *
12868599 ATGCATTTTACCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTAATGGGTTGGCTTAGGCATA
66 ACGTATTATGCCTCTCCGA-CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
12868664 GGGAGTTCATTCCATGTCTAAGCCCCAAC
130 GGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * *
12868693 CGGACTGAGGGTTGTGACAGCAGGACCGACAGTACGCAAAGGGGGACCGGGTCGATCCCCGGCTT
1 CGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTCGATCCTCGACTT
* * * *
12868758 GCGTATTCTGCCTCTCCGGCGGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATA
66 ACGTATTATGCCTCTCCGAC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
*
12868823 CGGAAGTTCATTCCATGTCTAAGCCCCAAC
130 -GGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * * * * * ** *
12868853 TGGACCGAGGGTTGTGGCAGCGGGTTCGACAGCACACAGAGGTGGACCAGACCGATCCTCGATTT
1 CGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTCGATCCTCGACTT
* * * * *
12868918 ACGTATTATGCCTTTTCAGTCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
66 ACGTATTATGCC-TCTCCGACGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
** *
12868983 CAGAGTTCATTCCATGCCTAAGC
130 GGGAGTTCATTCCATGTCTAAGC
12869006 ATATGGAGTT
Statistics
Matches: 261, Mismatches: 48, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
158 33 0.13
159 95 0.36
160 128 0.49
161 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
CGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTCGATCCTCGACTT
ACGTATTATGCCTCTCCGACGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAAC
Found at i:12869470 original size:159 final size:156
Alignment explanation
Indices: 12869070--12869518 Score: 467
Period size: 159 Copynumber: 2.8 Consensus size: 156
12869060 GGACCAACAA
* * * *
12869070 CAGGATCGACAGCACGTA-AGGGGGTCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC
1 CAGGATCGATAGCACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC
* * * * *
12869134 AGCCGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAA
66 GGCTGA--GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
12869199 GCCCTAGTCAGACCGAGGGTTGTGGCAG
129 GCCCTAGCCAGACCGAGGGTTGCGGCAG
* ** * * * * *
12869227 CGGGATCGATAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCG-G
1 CAGGATCGATAGCACGTAGA-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGAT
* * * * * *
12869291 CTGGCTCAACGCCCGTACGCTCGCTTCATGGGTTGACTTAGGCATACGAAATTCATT-CATAGTC
65 C-GGCT-GA-GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTC
* *
12869355 TAA--CATCAGACCGGACCGAGGGTTGCGGCAG
126 TAAGCCCT-AG-CCAGACCGAGGGTTGCGGCAG
* * * *
12869386 TAGGATCGATAGCACGTAGGAGGGGATCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTTCGAT
1 CAGGATCGATAGCACGTA-GAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGAT
*
12869451 CGGCTGAGCACCGACACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTA
65 CGGCTGAGC-CCG-CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
12869516 AGC
128 AGC
12869519 ATACGGAGTT
Statistics
Matches: 232, Mismatches: 46, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
157 18 0.08
158 11 0.05
159 196 0.84
160 7 0.03
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (156 bp):
CAGGATCGATAGCACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC
GGCTGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCTAGCCAGACCGAGGGTTGCGGCAG
Found at i:12869523 original size:26 final size:26
Alignment explanation
Indices: 12869493--12869543 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12869483 TGGCTTAGGT
12869493 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGGAGTTCATTCCTA-GTCTAAGC
12869519 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
12869544 ATTGGATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:12869769 original size:23 final size:24
Alignment explanation
Indices: 12869736--12869790 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
12869726 CCGAGGGTTG
*
12869736 TGGCAGTAGAACC-ACAACGGGAT
1 TGGCAGCAGAACCAACAACGGGAT
12869759 TGGCAGCAGAACCAACAACGGGAT
1 TGGCAGCAGAACCAACAACGGGAT
12869783 TGGCAGCA
1 TGGCAGCA
12869791 CGCAGAAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 12 0.40
24 18 0.60
ACGTcount: A:0.35, C:0.24, G:0.31, T:0.11
Consensus pattern (24 bp):
TGGCAGCAGAACCAACAACGGGAT
Found at i:12869925 original size:26 final size:26
Alignment explanation
Indices: 12869895--12869947 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12869885 GTTGACTTAG
12869895 GCATACAAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
** * *
12869921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
12869947 G
1 G
12869948 ATCCGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:12870256 original size:157 final size:159
Alignment explanation
Indices: 12870003--12870350 Score: 407
Period size: 157 Copynumber: 2.2 Consensus size: 159
12869993 GGAGTGATCA
** * * * *
12870003 GGTCGATCCCTCCTTTGCGCATTCTGCCTCTTCGACCGTCTGAGCGCTCTGCCTGCCCATTTTAT
1 GGTCGATCCC-CGATTGCACATTCTGCCTCTCCGACCGTCTGAGCGCTCCGCCTGCCCATTTCAT
* * * *
12870068 GGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGCTATGGCA
65 GGGTAGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGCTATGGCA
* *
12870133 GCGGGATCGACAGCACATAG-GGGGGACCG
130 GCAGGACCGACAGCACATAGAGGGGGACCG
* * *
12870162 GGTCGATCCCCGATTGCCCATTCTGCCTCTCCGGCCAG-CTGAGCGC-CCGCGC-GCCCATTTCG
1 GGTCGATCCCCGATTGCACATTCTGCCTCTCCGACC-GTCTGAGCGCTCCGC-CTGCCCATTTCA
* * * *
12870224 TGGGTAGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTTTGGT
64 TGGGTAGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGCTATGGC
** *
12870289 AGCAGGACCGACAGCATGTAGAGGGGGATCG
129 AGCAGGACCGACAGCACATAGAGGGGGACCG
* * *
12870320 GGCCGATCCCCAGCTTGCACATTATGCCTCT
1 GGTCGATCCCC-GATTGCACATTCTGCCTCT
12870351 TCGGTCGGCT
Statistics
Matches: 160, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
157 85 0.53
158 48 0.30
159 27 0.17
ACGTcount: A:0.17, C:0.30, G:0.29, T:0.24
Consensus pattern (159 bp):
GGTCGATCCCCGATTGCACATTCTGCCTCTCCGACCGTCTGAGCGCTCCGCCTGCCCATTTCATG
GGTAGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGCTATGGCAG
CAGGACCGACAGCACATAGAGGGGGACCG
Done.