Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 64 of 138
Found at i:12870422 original size:159 final size:157
Alignment explanation
Indices: 12870057--12870423 Score: 421
Period size: 157 Copynumber: 2.3 Consensus size: 157
12870047 CGCTCTGCCT
* *
12870057 GCCCATTTTATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
1 GCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
* * * * * *
12870122 GGGCTATGGCAGCGGGATCGACAGCACATAGGGGGGACCGGGTCGATCCCCGATTGCCCATTCTG
66 AGGCTATGGCAGCAGGACCGACAGCACATAGGGGGGACCGGGCCGATCCCCGATTGCACATTATG
* * *
12870187 CCTCTCCGGCCAGCTGAGCGCCCGCGC
131 CCTCTCCGGCCAGCTCAGCACCCGCAC
* * * *
12870214 GCCCATTTCGTGGGTAGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
1 GCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
* * * ** * *
12870279 AGGTTTTGGTAGCAGGACCGACAGCATGTAGAGGGGGATCGGGCCGATCCCCAGCTTGCACATTA
66 AGGCTATGGCAGCAGGACCGACAGCACATAG-GGGGGACCGGGCCGATCCCC-GATTGCACATTA
* * * *
12870344 TGCCTCTTCGGTCGGCTCAGCACCCGTAC
129 TGCCTCTCCGGCCAGCTCAGCACCCGCAC
* * * * *
12870373 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 GCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
12870424 ATAGGGAGTT
Statistics
Matches: 173, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 82 0.47
158 18 0.10
159 70 0.40
160 3 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
GCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
AGGCTATGGCAGCAGGACCGACAGCACATAGGGGGGACCGGGCCGATCCCCGATTGCACATTATG
CCTCTCCGGCCAGCTCAGCACCCGCAC
Found at i:12870426 original size:26 final size:26
Alignment explanation
Indices: 12870396--12870448 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12870386 GTTGACTTAG
*
12870396 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
12870422 GCATAGGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
12870448 G
1 G
12870449 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:12870616 original size:26 final size:26
Alignment explanation
Indices: 12870580--12870632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12870570 GTTGGCTTAG
*
12870580 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
12870606 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12870632 G
1 G
12870633 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12871842 original size:26 final size:26
Alignment explanation
Indices: 12871806--12871858 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12871796 GTTGGCTTAG
*
12871806 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTAATTGCC-TGTCTAA
*
12871832 GCATATAGAGTTAATTGCCTGTCTAA
1 GCATACAGAGTTAATTGCCTGTCTAA
12871858 G
1 G
12871859 ATTGCATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTAATTGCCTGTCTAA
Found at i:12872117 original size:13 final size:13
Alignment explanation
Indices: 12872099--12872123 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12872089 TACGCATTAT
12872099 GCCTCTTCGACCA
1 GCCTCTTCGACCA
12872112 GCCTCTTCGACC
1 GCCTCTTCGACC
12872124 GGCTGAATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.48, G:0.16, T:0.24
Consensus pattern (13 bp):
GCCTCTTCGACCA
Found at i:12872199 original size:26 final size:26
Alignment explanation
Indices: 12872163--12872215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12872153 GTTGACTTAG
12872163 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12872189 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12872215 G
1 G
12872216 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12872234 original size:357 final size:357
Alignment explanation
Indices: 12871756--12872720 Score: 856
Period size: 368 Copynumber: 2.7 Consensus size: 357
12871746 ACGTATTTTA
** * * *
12871756 CCTCTCTGATAGGCTGAGTGCCCGCACGCTCGTTTCGTGTGTTGGCTTAGGCATACAGAGTTCAT
1 CCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * *
12871821 -TCCATGTCTAAGCATATAGAGTTAATTGCCT-GTCTAAGATTGCATCAGACCGAGGGTTGTGGC
66 CCCCA-GTCTAAGCATACAGAGTTCATT-CCTAGTCTAAGATCGAACCGGACCGAGGGTTGT---
* * * * *
12871884 AGCAATACCAACAGCAGGATCGACAGCACGCAAGGGGAGATCGGGTCGATCCCCGGCTTGCGTAA
126 -G--------ACAGCAGGATCGACAGCACGC-AGGGGAGACCGGGCCAATCCCCGGCTTACGCAA
* * **
12871949 TCTATCTCTCCAGTTGGCTGAGCGCACGCACGCTTGTTTCGTGGGTTGG-TTCAGGCATACGAAG
181 TCTACCTCTCCAGTCGGCTGAGCGCACGCACGCCCGTTTCGTGGGTTGGCTT-AGGCATACGAAG
* *
12872013 TTCATTCCATGTCTAAG-CT-CCAG-TC-GG-AT-C-G-AGG-G-T-T-G-TGGCAGCACGCAGA
245 TTCATTCCATGTCTAAGCCTACCAGACCGGGTATGCAGCAGGCGATATGGATGACAGCACGCAGA
*
12872065 GGAAGACCGAGCTGATCCCCAGCTTACGCATTATGCCTCTTCGACCAG
310 GGAAGACCGAGCTGATCCCCAGCTTACGCACTATGCCTCTTCGACCAG
*
12872113 CCTCT-TCGACCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 CCTCTCT-GACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
12872177 TCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGATCGAGGGTTGTGACA
65 TCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGTGACA
* * * * * *
12872242 GCAGGATCGGCAGCATGCAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGGT
130 GCAGGATCGACAGCACGCAGGGGAGACCGGGCCAATCCCCGGCTTACGCAATCTACCTCTCCAGT
* * * *
12872307 CGGCTGAGTGCTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
195 CGGCTGAGCGCACGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
* **
12872372 AGCCCCTACCAGACCGAGGGTTGTGGCAGCAGGACCGATAGTGGGATTGACAGCACGCAGAGGGG
260 AG--CCTACCAGACC--GGG-TAT-GCAGCAGG--CGATA-T-GGA-TGACAGCACGCAGAGGAA
* * * *
12872437 GACCGAGCTGATCCTCGGCTTACGTACTATGCCTCTTCGACCGG
314 GACCGAGCTGATCCCCAGCTTACGCACTATGCCTCTTCGACCAG
** * * * * *
12872481 CCTCTCTGGTCGACTGAGCGCCCGTACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
12872546 CCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTG-CAGCA
66 CCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGTGA-CA
** * * * * * * *
12872610 ATAGGATCGGCAGCACGCAGGGG-GAACCAGACCGATCCTCGGCTTGA-GCATTCTACCTCT-CT
130 GCAGGATCGACAGCACGCAGGGGAG-ACCGGGCCAATCCCCGGCTT-ACGCAATCTACCTCTCCA
* * * ** * *
12872672 GACCGACTGAGCGCCCGCACGCATGTTTTGTAGGTTGGCTTAGGCATAC
193 G-TCGGCTGAGCGCACGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAC
12872721 AGGGTTCATT
Statistics
Matches: 498, Mismatches: 77, Indels: 55
0.79 0.12 0.09
Matches are distributed among these distances:
344 94 0.19
345 21 0.04
347 2 0.00
348 4 0.01
349 1 0.00
352 2 0.00
353 1 0.00
354 1 0.00
356 5 0.01
357 100 0.20
358 6 0.01
361 1 0.00
362 1 0.00
364 1 0.00
366 1 0.00
367 4 0.01
368 251 0.50
369 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (357 bp):
CCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGTGACAG
CAGGATCGACAGCACGCAGGGGAGACCGGGCCAATCCCCGGCTTACGCAATCTACCTCTCCAGTC
GGCTGAGCGCACGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
GCCTACCAGACCGGGTATGCAGCAGGCGATATGGATGACAGCACGCAGAGGAAGACCGAGCTGAT
CCCCAGCTTACGCACTATGCCTCTTCGACCAG
Found at i:12872372 original size:344 final size:356
Alignment explanation
Indices: 12871894--12872732 Score: 875
Period size: 368 Copynumber: 2.4 Consensus size: 356
12871884 AGCAATACCA
* * * * * * * *
12871894 ACAGCAGGATCGACAGCACGCAAGGGGAGATCGGGTCGATCCCCGGCTTGCGTAATCTATCTCTC
1 ACAGCAGGATCGGCAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTC
* * * * *
12871959 CAGTTGGCTGAGCGCACGCACGCTTGTTTCGTGGGTTGG-TTCAGGCATACGAAGTTCATTCCAT
65 CGGTCGGCTGAGCGCACGCACGCATGTTTCGTGGGTTGGCTT-AGGCATAAGGAGTTCATTCCAT
* *
12872023 GTCTAAG-CT-CCAG-TC-GG-AT-C-G-AGG-G-T-T-G-TGGCAGCACGCAGAGGAAGACCGA
129 GTCTAAGCCTACCAGACCGGGTATGCAGCAGGCGATATGGATGACAGCACGCAGAGGAAGACCGA
* * *
12872075 GCTGATCCCCAGCTTACGCATTATGCCTCTTCGACCAGCCTCT-TCGACCGGCTGAATGCCCGCA
194 GCTGATCCCCAGCTTACGCACTATGCCTCTTCGACCAGCCTCTCT-GACCGACTGAACGCCCGCA
* * *
12872139 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
258 CGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
* * *
12872204 TCCTAGTCTAAGATCAAACCGGATCGAGGGTTGTG
323 TCCAAGTCTAAGATCAAACCGGACCGAGGGTTG-C
* * *
12872239 ACAGCAGGATCGGCAGCATGCAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCC
1 ACAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCC
* * ** *
12872304 GGTCGGCTGAGTGCTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GGTCGGCTGAGCGCACGCACGCATGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
*
12872369 CTAAGCCCCTACCAGACCGAGGGTTGTGGCAGCAGGACCGATAGTGGGATTGACAGCACGCAGAG
131 CTAAG--CCTACCAGACC--GGG-TAT-GCAGCAGG--CGATA-T-GGA-TGACAGCACGCAGAG
** * * * * ** *
12872434 GGGGACCGAGCTGATCCTCGGCTTACGTACTATGCCTCTTCGACCGGCCTCTCTGGTCGACTGAG
185 GAAGACCGAGCTGATCCCCAGCTTACGCACTATGCCTCTTCGACCAGCCTCTCTGACCGACTGAA
*
12872499 CGCCCGTACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
250 CGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
**
12872564 GAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGC
315 GAGTTCATTCCAAGTCTAAGATCAAACCGGACCGAGGGTTGC
** * * * *
12872606 AGCAATAGGATCGGCAGCACGCAGGGGGAACCAGACCGATCCTCGGCTTGA-GCATTCTACCTCT
1 A-CAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT-ACGCATTCTACCTCT
* ** * * * *
12872670 CTGACCGACTGAGCGCCCGCACGCATGTTTTGTAGGTTGGCTTAGGCATACAGG-GTTCATTCC
64 CCGGTCGGCTGAGCGCACGCACGCATGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCC
12872733 CAGCCTAAGA
Statistics
Matches: 402, Mismatches: 63, Indels: 35
0.80 0.13 0.07
Matches are distributed among these distances:
344 94 0.23
345 21 0.05
347 2 0.00
348 4 0.01
349 1 0.00
352 2 0.00
354 1 0.00
356 1 0.00
357 1 0.00
358 3 0.01
361 1 0.00
362 1 0.00
364 1 0.00
366 1 0.00
367 1 0.00
368 263 0.65
369 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (356 bp):
ACAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCC
GGTCGGCTGAGCGCACGCACGCATGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
CTAAGCCTACCAGACCGGGTATGCAGCAGGCGATATGGATGACAGCACGCAGAGGAAGACCGAGC
TGATCCCCAGCTTACGCACTATGCCTCTTCGACCAGCCTCTCTGACCGACTGAACGCCCGCACGC
TCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCC
AAGTCTAAGATCAAACCGGACCGAGGGTTGC
Found at i:12872524 original size:368 final size:368
Alignment explanation
Indices: 12872054--12872732 Score: 925
Period size: 368 Copynumber: 1.8 Consensus size: 368
12872044 AGGGTTGTGG
*
12872054 CAGCACGCAGAGGAAGACCGAGCTGATCCCCAGCTTACGCATTATGCCTCTTCGACCAGCCTCTT
1 CAGCACGCAGAGGAAGACCGAGCTGATCCCCAGCTTACGCACTATGCCTCTTCGACCAGCCTCTT
* * * *
12872119 CGACCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
66 CGACCGACTGAACGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
* * * * *
12872184 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGATCGAGGGTTG-TGACAGCAGGA
131 TCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAAACCGGACCGAGGGTTGCAG-CAACAGGA
* * * * * ** *
12872248 TCGGCAGCATGCAGGGGGGACCGGGCCAATCCCCGGCTT-ACGCATTCTGCCTCTCCGGTCGGCT
195 TCGGCAGCACGCAGGGGGAACCAGACCAATCCCCGGCTTGA-GCATTCTACCTCTCCGACCGACT
* * * * *
12872312 GAGTGCTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGGAGTTCATTCCATGTCTAAGCC
259 GAGCGCCCGCACGCACGTTTCGTAGGTTGGCTTAGGCATACAGG-GTTCATTCCATGTCTAAGCC
12872376 CCTACCAGACCGAGGGTTGTGGCAGCAGGACCGATAGTGGGATTGA
323 CCTACCAGACCGAGGGTTGTGGCAGCAGGACCGATAGTGGGATTGA
** * * * *
12872422 CAGCACGCAGAGGGGGACCGAGCTGATCCTCGGCTTACGTACTATGCCTCTTCGACCGGCCTC-T
1 CAGCACGCAGAGGAAGACCGAGCTGATCCCCAGCTTACGCACTATGCCTCTTCGACCAGCCTCTT
** * *
12872486 CTGGTCGACTGAGCGCCCGTACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
66 C-GACCGACTGAACGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
** *
12872551 GTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAATAGGA
130 GTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAAACCGGACCGAGGGTTGCAGCAACAGGA
* * *
12872616 TCGGCAGCACGCAGGGGGAACCAGACCGATCCTCGGCTTGAGCATTCTACCTCTCTGACCGACTG
195 TCGGCAGCACGCAGGGGGAACCAGACCAATCCCCGGCTTGAGCATTCTACCTCTCCGACCGACTG
* *
12872681 AGCGCCCGCACGCATGTTTTGTAGGTTGGCTTAGGCATACAGGGTTCATTCC
260 AGCGCCCGCACGCACGTTTCGTAGGTTGGCTTAGGCATACAGGGTTCATTCC
12872733 CAGCCTAAGA
Statistics
Matches: 266, Mismatches: 41, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
367 2 0.01
368 260 0.98
369 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (368 bp):
CAGCACGCAGAGGAAGACCGAGCTGATCCCCAGCTTACGCACTATGCCTCTTCGACCAGCCTCTT
CGACCGACTGAACGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
TCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAAACCGGACCGAGGGTTGCAGCAACAGGAT
CGGCAGCACGCAGGGGGAACCAGACCAATCCCCGGCTTGAGCATTCTACCTCTCCGACCGACTGA
GCGCCCGCACGCACGTTTCGTAGGTTGGCTTAGGCATACAGGGTTCATTCCATGTCTAAGCCCCT
ACCAGACCGAGGGTTGTGGCAGCAGGACCGATAGTGGGATTGA
Found at i:12872561 original size:26 final size:26
Alignment explanation
Indices: 12872531--12872583 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12872521 GTTGACTTAG
* *
12872531 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
*
12872557 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
12872583 G
1 G
12872584 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:12873453 original size:26 final size:26
Alignment explanation
Indices: 12873423--12873475 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12873413 GTTGACTTAG
12873423 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
12873449 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12873475 G
1 G
12873476 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12873780 original size:159 final size:159
Alignment explanation
Indices: 12873576--12873951 Score: 422
Period size: 159 Copynumber: 2.4 Consensus size: 159
12873566 CAGTTGAGCC
* * * * *
12873576 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAATC
** ** *
12873641 GGGGTGAGGGTTGTAGCAGTGGGACCGATAGCATGCAGA-G-GGGGACCAAGTC-ATTCCCCGGC
66 GGACTGAGGGTTGTAGCAGCAGGACCGACAGCA--CAGAGGAGGGGACCAAGTCGA-TCCCCGGC
* * *
12873703 TTGCGCATTATGCCTCTTCGG-TCGGCTCAGTG
128 TTACGCATTATGCCTCTCCGGCT-GGCTCAGCG
* * **
12873735 CCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAAAT
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAAT
* ** * **
12873799 CGGACTGAGGGTTGTGGCAGCAGGATTGACAGCACATAGGAGGGGACCGGGTCGATCCCCGGCTT
65 CGGACTGAGGGTTGTAGCAGCAGGACCGACAGCACAGAGGAGGGGACCAAGTCGATCCCCGGCTT
* *
12873864 ACGCATTCTGCCTCTCCGGCTGGCTGAGCG
130 ACGCATTATGCCTCTCCGGCTGGCTCAGCG
*
12873894 CCCGCACGCTCGTTTCGTGGGTT-AGGTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12873952 ATACGGAGTT
Statistics
Matches: 181, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
157 3 0.02
158 5 0.03
159 168 0.93
160 5 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAATC
GGACTGAGGGTTGTAGCAGCAGGACCGACAGCACAGAGGAGGGGACCAAGTCGATCCCCGGCTTA
CGCATTATGCCTCTCCGGCTGGCTCAGCG
Found at i:12874687 original size:26 final size:26
Alignment explanation
Indices: 12874657--12874709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12874647 GTTGACTTAG
12874657 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
** *
12874683 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12874709 G
1 G
12874710 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12875364 original size:196 final size:197
Alignment explanation
Indices: 12875008--12875366 Score: 451
Period size: 196 Copynumber: 1.8 Consensus size: 197
12874998 GGGTTACAGT
* * *
12875008 AGCAGGATCGACAGCACGTAGAGGGGGATCGGGCCAGTCCCTGACTTGCACATTCTGCCTCTCCG
1 AGCAGGATCGACAGCACGTAGAGGGGGACCAGGCCAGTCCCTGACTTGCACATTCTGCCTCTACG
* * * * *
12875073 ACCGACTGAGAGCTCGCACCCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCAATGTC
66 ACCGACTGAGAGCCCGCACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCAATGTC
* *
12875138 TAAGCATAAGGAATTCATTCCTAGTCTAAGATCAGACCAGACCGAAGGTTACGATAGCAGGACCA
131 TAAGCATAAGGAATTCATTACTAATCTAAGATCAGACCAGACCGAAGGTTACGATAGCAGGACCA
12875203 GC
196 GC
** *
12875205 AGCAGGATCTG-CAGCACGTAG-GGGGGACCAGGCC-GATCCCT-AGCTTGTGCATTCTGCCTTT
1 AGCAGGATC-GACAGCACGTAGAGGGGGACCAGGCCAG-TCCCTGA-CTTGCACATTCTGCCTCT
* * ** *
12875266 ACGATCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCA
63 ACGACCGACTGAGAGCCCGCACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCAA
* *
12875331 -GTCTAAGCATATGGAGTTCATTTAC-AATCTAAGATC
127 TGTCTAAGCATAAGGAATTCA-TTACTAATCTAAGATC
12875367 GAACCGAACC
Statistics
Matches: 137, Mismatches: 20, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
195 2 0.01
196 110 0.80
197 24 0.18
198 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (197 bp):
AGCAGGATCGACAGCACGTAGAGGGGGACCAGGCCAGTCCCTGACTTGCACATTCTGCCTCTACG
ACCGACTGAGAGCCCGCACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCAATGTC
TAAGCATAAGGAATTCATTACTAATCTAAGATCAGACCAGACCGAAGGTTACGATAGCAGGACCA
GC
Found at i:12875849 original size:26 final size:26
Alignment explanation
Indices: 12875812--12875864 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12875802 GTTGGCTTCG
*
12875812 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12875838 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12875864 G
1 G
12875865 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12876874 original size:159 final size:159
Alignment explanation
Indices: 12876684--12877060 Score: 420
Period size: 158 Copynumber: 2.4 Consensus size: 159
12876674 TCGGTTGAGC
* * *
12876684 GCCCGCACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 GCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * ** * *
12876748 CCAGACTGAGGGTTGTGGCAGCAGGGTCGACGGCATGCAGAAGGCGACCGGGTCGATCCCCGACT
66 CCAGACCGAGGGTTGCGGCAGCAGGGTCGACAACACGCAG-AGGCGACCGGGCCGATCCCCGACT
* * *
12876813 TGCGCATTATGCCTCTCCAGCCGGCTAAAT
130 TGCGCATTATACCTCTCCAACCGACTAAAT
* * * **
12876843 GCTCGCACGCTCGTTTCCTAGGTTGAG-TTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATTA
1 GCCCGCACGCTCGTTTCGTAGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA
* * * * ** *
12876905 GACCTGACCGAGGGTTGCGGTAGCAGGGTCGACAACACGCAGGGGGGATTGGGCCGGTCCCCGAC
64 GACCAGACCGAGGGTTGCGGCAGCAGGGTCGACAACACGCAGAGGCGACCGGGCCGATCCCCGAC
* * * *
12876970 TTGCGCATTCTACCTCTCCAATCGACTGAGT
129 TTGCGCATTATACCTCTCCAACCGACTAAAT
* * *
12877001 TCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12877061 TACGGAATTC
Statistics
Matches: 178, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
157 4 0.02
158 89 0.50
159 81 0.46
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CCAGACCGAGGGTTGCGGCAGCAGGGTCGACAACACGCAGAGGCGACCGGGCCGATCCCCGACTT
GCGCATTATACCTCTCCAACCGACTAAAT
Found at i:12877034 original size:158 final size:158
Alignment explanation
Indices: 12876627--12877060 Score: 469
Period size: 159 Copynumber: 2.7 Consensus size: 158
12876617 CGATAGCCTA
* * * * * * *
12876627 CAGGGGGGACTGGGCCGATCCTCGGCTTGCACATTCTACCTCTTCGGTCGGTTGAGCGCCCGCAC
1 CAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGCAC
* * * *
12876692 GCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGA
66 GCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGA
* ** *
12876757 GGGTTGTGGCAGCAGGGTCGACGGCATG
131 GGGTTGCGGCAGCAGGGTCGACAACACG
* * * * * * * * * *
12876785 CAGAAGGCGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGGCTAAATGCTCGCA
1 CAG-GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGCA
* * ** *
12876850 CGCTCGTTTCCTAGGTTGAG-TTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATTAGACCTGA
65 CGCTCGTTTCGTAGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGA
*
12876912 CCGAGGGTTGCGGTAGCAGGGTCGACAACACG
127 CCGAGGGTTGCGGCAGCAGGGTCGACAACACG
* * * * *
12876944 CAGGGGGGATTGGGCCGGTCCCCGACTTGCGCATTCTACCTCTCCAATCGACTGAGTTCCCGCAC
1 CAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGCAC
* *
12877009 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12877061 TACGGAATTC
Statistics
Matches: 219, Mismatches: 50, Indels: 13
0.78 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 92 0.42
159 119 0.54
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGCAC
GCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGA
GGGTTGCGGCAGCAGGGTCGACAACACG
Found at i:12877071 original size:26 final size:26
Alignment explanation
Indices: 12877032--12877084 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12877022 GTTGGCTTAG
*
12877032 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
12877058 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12877084 G
1 G
12877085 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:12877400 original size:342 final size:334
Alignment explanation
Indices: 12876973--12877944 Score: 1019
Period size: 342 Copynumber: 2.9 Consensus size: 334
12876963 CCCCGACTTG
* * * ** * *
12876973 CGCATTCTACCTCTCCAATCGACTGAGTTCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTATGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
* *
12877038 GGAGTTCAT-TCCATGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCGGATCGGACTGAGG
66 GGAGTTCATCCCCA-GTCTAAGCATAC-GAATTCATTCCCAGTCTAAGATCGGACCGGACTGAGG
* *
12877102 GTTGTGACAGCAATACCAGTAGCAGGATCGGTAGCACACAGGGGGGACTGGGCCGATCATCGACT
129 GTTGTG-CAG----A-CAGTAGCAGGATCGGCAGCACACAGGGGGGACTGGGCCGATC-CCGACT
* * *
12877167 TTTGCATTCTGCCTCTCCGGCCGACTGAGCGCTCGCACGCTCATTTTGTGGGTTGGCTTAGGCAT
187 TTTGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGC-CATTTCGTGGGTTGGCTTAGGCAT
* * * *
12877232 ACGTAGTTCACTCCATGTCTAA-CCCCAGCCAGACCGAGGGTTGTGGCAGCACGCAGAGGGGGAC
251 AGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCACGCAGAGGGGGAC
*
12877296 CGGGCTAATCTTCAGCTTA
316 CGGGCTAATCCTCAGCTTA
* * * * * * **
12877315 CGCATTATGCCTCTCCGGTCGGCTGGGCGCCTGCACGTTCGTTTCATGGGTTGACTTAGAAATAC
1 CGCATTATGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
* * *
12877380 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGTGGG
66 GGAGTTCATCCCCAGTCTAAGCATAC-GAATTCATTCCCAGTCTAAGATCGGACCGGACTGAGGG
* * ** * *
12877445 TTGT---GAC---AGCAGGATTGGCAGCACGCAGGGGGGA-TCAAGCCGGTCCCCAGC--TTGCA
130 TTGTGCAGACAGTAGCAGGATCGGCAGCACACAGGGGGGACT-GGGCCGATCCCGA-CTTTTGC-
* * *
12877501 AATTCTGCCTCTCTGGCCGGCTGAGTGCCCACACGCCTATTTCGTGGGTTGGCTTAGGCATAGGG
192 -ATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCC-ATTTCGTGGGTTGGCTTAGGCATAGGG
* * * *
12877566 AGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTATCAGTAGCATGCAGAGGGGGATC
255 AGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTG--T-GGCAGCACGCAGAGGGGGACC
* * * *
12877631 GGGTTGATCCTCGGCTTG
317 GGGCTAATCCTCAGCTTA
* *
12877649 CGCATTATGGCTCTCCAGTCGACTGAGCGCCCGAACGCTCATTTCAT-GGTTGACTTAGGCATAC
1 CGCATTATGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
* * * *
12877713 AGAGTTCATCCTCAGTCTAAGCATACGAAGCTCATTCCCAGTCTAAGATCGGACCGGACTGAGTG
66 GGAGTTCATCCCCAGTCTAAGCATACGAA-TTCATTCCCAGTCTAAGATCGGACCGGACTGAGGG
* * * * **
12877778 -T-TGCAG-CAGT---AGGATCGACAGAACATA-GGGGGACTGGGCCGATCCCCGGCTTGCGCAT
130 TTGTGCAGACAGTAGCAGGATCGGCAGCACACAGGGGGGACTGGGCCGAT-CCCGACTTTTGCAT
* * * *
12877836 TCTACCTCTTTGGTCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTGGGCATAGGGAGT
194 TCTGCCTCTCTGGCCGACTGAGCGCCCGCACG-CCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
* * *
12877901 TCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGATGTGGCAGC
258 TCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGC
12877945 CAGACCGTCA
Statistics
Matches: 519, Mismatches: 89, Indels: 57
0.78 0.13 0.09
Matches are distributed among these distances:
328 4 0.01
329 8 0.02
330 103 0.20
331 21 0.04
332 106 0.20
333 91 0.18
334 73 0.14
338 1 0.00
342 109 0.21
343 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (334 bp):
CGCATTATGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
GGAGTTCATCCCCAGTCTAAGCATACGAATTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGT
TGTGCAGACAGTAGCAGGATCGGCAGCACACAGGGGGGACTGGGCCGATCCCGACTTTTGCATTC
TGCCTCTCTGGCCGACTGAGCGCCCGCACGCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCACGCAGAGGGGGACCGGGCTAATC
CTCAGCTTA
Found at i:12877410 original size:26 final size:26
Alignment explanation
Indices: 12877376--12877426 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12877366 TGACTTAGAA
*
12877376 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
12877402 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
12877427 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:12877770 original size:333 final size:330
Alignment explanation
Indices: 12876973--12877944 Score: 920
Period size: 332 Copynumber: 2.9 Consensus size: 330
12876963 CCCCGACTTG
* * * ** * * * **
12876973 CGCATTCTACCTCTCCAATCGACTGAGTTCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTATGCCTCTCCAGTCGACTGAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGAAATAC
* * * ** * *
12877038 GGAGTTCAT-TCCATGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCGGATCGGACTGAGG
66 AGAGTTCATCCCCA-GTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATCAGACCGGACTGAGG
** * ** **
12877102 GTTGTGACAGCAATACCAGTAGCAGGATCGGTAGCACACAGGGGGGACTGGGCCGATCATC-GAC
130 G-T-TG-CAG------C---AGCAGGATCGACAGAACACA-GGGGGACTAAGCCGATCCCCAG-C
* * *
12877166 TTTTGC--ATTCTGCCTCTCCGGCCGACTGAGCGCTCGCACG-CTCATTTTGTGGGTTGGCTTAG
181 --TTGCAAATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCCT-ATTTCGTGGGTTGGCTTAG
* * * * *
12877228 GCATACGTAGTTCACTCCATGTCTAA-CCCCAGCCAGACCGAGGGTTGTGGCAGCACGCAGAGGG
243 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTAGCAGCACGCAGAGGG
*
12877292 GGACCGGGCTAATCTTCAGCTTA
308 GGACCGGGCTAATCCTCAGCTTA
* * * * * * *
12877315 CGCATTATGCCTCTCCGGTCGGCTGGGCGCCTGCACGTTCGTTTCATGGGTTGACTTAGAAATAC
1 CGCATTATGCCTCTCCAGTCGACTGAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGAAATAC
* * *
12877380 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGTGGG
66 AGAGTTCATCCCCAGTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * * * *
12877445 TTG-TGACAGCAGGATTGGCAGCACGCAGGGGGGA-TCAAGCCGGTCCCCAGCTTGCAAATTCTG
131 TTGCAG-CAGCAGGATCGACAGAACACA-GGGGGACT-AAGCCGATCCCCAGCTTGCAAATTCTG
* * *
12877508 CCTCTCTGGCCGGCTGAGTGCCCACACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
193 CCTCTCTGGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * * * *
12877573 TCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTATCAGTAGCATGCAGAGGGGGATCGGGTTGA
258 TCCATGTCTAAGCCCTAGCCAGACCGAGGGTTG--T-AGCAGCACGCAGAGGGGGACCGGGCTAA
* *
12877638 TCCTCGGCTTG
320 TCCTCAGCTTA
* **
12877649 CGCATTATGGCTCTCCAGTCGACTGAGCGCCCGAACGCTCATTTCAT-GGTTGACTTAGGCATAC
1 CGCATTATGCCTCTCCAGTCGACTGAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGAAATAC
* * *
12877713 AGAGTTCATCCTCAGTCTAAGCATAC-GAAGCTCATTCCCAGTCTAAGATCGGACCGGACTGAGT
66 AGAGTTCATCCCCAGTCTAAGCATACAG-AGCTCATTCCCAGTCTAAGATCAGACCGGACTGAGG
* * ** * ** *
12877777 GTTGCAGCAGTAGGATCGACAGAACATAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACC
130 GTTGCAGCAGCAGGATCGACAGAACACAGGGGGACTAAGCCGATCCCCAGCTTGCAAATTCTGCC
* * * *
12877842 TCTTTGGTCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTC
195 TCTCTGGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * *
12877907 CATGTCTAAGCCCTAGTCGGACCGAGGGATGTGGCAGC
260 CATGTCTAAGCCCTAGCCAGACCGAGGGTTGTAGCAGC
12877945 CAGACCGTCA
Statistics
Matches: 525, Mismatches: 92, Indels: 39
0.80 0.14 0.06
Matches are distributed among these distances:
328 4 0.01
329 5 0.01
330 103 0.20
331 23 0.04
332 115 0.22
333 93 0.18
334 70 0.13
338 1 0.00
340 2 0.00
341 1 0.00
342 105 0.20
343 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (330 bp):
CGCATTATGCCTCTCCAGTCGACTGAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGAAATAC
AGAGTTCATCCCCAGTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
TTGCAGCAGCAGGATCGACAGAACACAGGGGGACTAAGCCGATCCCCAGCTTGCAAATTCTGCCT
CTCTGGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
ATGTCTAAGCCCTAGCCAGACCGAGGGTTGTAGCAGCACGCAGAGGGGGACCGGGCTAATCCTCA
GCTTA
Found at i:12878244 original size:26 final size:26
Alignment explanation
Indices: 12878208--12878260 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12878198 GTTGGCTTAG
12878208 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12878234 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12878260 G
1 G
12878261 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12878998 original size:26 final size:26
Alignment explanation
Indices: 12878948--12879000 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12878938 GTTGGCTTAG
* *
12878948 GCATACGGAGTTCATCACTAGTCTAA
1 GCATACGGAGTTCATCACCAATCTAA
12878974 GCATACGGAGTTCATTC-CCAATCTAA
1 GCATACGGAGTTCA-TCACCAATCTAA
12879000 G
1 G
12879001 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAATCTAA
Found at i:12879278 original size:158 final size:157
Alignment explanation
Indices: 12879114--12879514 Score: 432
Period size: 158 Copynumber: 2.5 Consensus size: 157
12879104 CATACGCCCG
* * *
12879114 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTC-GACTGAGGGTT
* * * *
12879179 GTGGCAGCGGGATCGGCAGCAT-GCAGAAGTGGACCGGGTTGATCCCTGACTTACG-ATTATGCC
65 GAGGCAGCAGGATCGACAGC-TCGCAGAAG-GGACCGGGCTGATCCCTGACTTACGTATTATGCC
* *
12879242 TCTCCGATCGGTTCAGCGCCCGCAAACTCA
128 TCTCCGATCAGCTCAGCGCCCGCAAACTCA
* * ** *
12879272 TTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCC-TAGTCTAAG-ATCAGATCGGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT-GTCTAAGCCCCAG-TC-GACTGAGGG
* * * * * * * *
12879335 TTGCGGCAGTAGGATCAACAGCTCGCAGGAGGGATCGGGCTGATCCCTGGCTTGCGTATTCTGCC
63 TTGAGGCAGCAGGATCGACAGCTCGCAGAAGGGACCGGGCTGATCCCTGACTTACGTATTATGCC
* * * ** *
12879400 TCTTCGGTCAGCTGAGCGCCCGCACGCTCG
128 TCTCCGATCAGCTCAGCGCCCGCAAACTCA
* *
12879430 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCTAAGCCCCAGTCGAACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCG-ACTGAGGGTT
*
12879495 GAGGTAGCAGGATCGACAGC
65 GAGGCAGCAGGATCGACAGC
12879515 GGATCGACAG
Statistics
Matches: 198, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
157 27 0.14
158 167 0.84
159 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGACTGAGGGTTG
AGGCAGCAGGATCGACAGCTCGCAGAAGGGACCGGGCTGATCCCTGACTTACGTATTATGCCTCT
CCGATCAGCTCAGCGCCCGCAAACTCA
Found at i:12879667 original size:26 final size:26
Alignment explanation
Indices: 12879631--12879686 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12879621 GTTGACTTAG
*
12879631 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATATGGAGTTCA-TCCTCAATCTAA
12879657 GCATATGGAGTTCATCCTCAATCTAA
1 GCATATGGAGTTCATCCTCAATCTAA
12879683 GCAT
1 GCAT
12879687 TGGGGGTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 3 0.11
26 25 0.89
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCTCAATCTAA
Found at i:12886635 original size:158 final size:156
Alignment explanation
Indices: 12886154--12886646 Score: 483
Period size: 159 Copynumber: 3.1 Consensus size: 156
12886144 AAGCAAACGA
** *
12886154 AGTTCATTCCCA-GTCTAAGATCAGA-CTGGA-TCGAGGGTTGCGGCAGTAGGATCGATAGCACG
1 AGTTCATT-CCATGTCTAAGATCAGATC-GGACT-GAGGGTTGCGGCAACAGGATCGATAGCACA
* * * * * * *
12886216 CAGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTGCCTTTCCGGTCGGCTGAGCGCCCGTACA
63 CAGGGGGACCAGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
* *
12886281 CCCGTTTCATGGGTTAGCTTAGGCATAGGG
128 CTCGTTTCATGGG-TAGCTTAGGCATACGG
** * * * * *
12886311 AGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAACGGGACCGGTAGCACGTA
1 AGTTCATTCCATGTCTAAG-ATCAGATCGGACTGAGGGTTGCGGCAACAGGATCGATAGCAC--A
* * * * * * * * * * *
12886375 GAAGGGGACCAGGCCGATCCTCGACTTGCACATTATGCCTCTCTGATTGGCTCAACGCCCGCACG
63 CAGGGGGACCAGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
*
12886440 CTCGTTTCATGGGTTGACTTAGGCATACGG
128 CTCGTTTCATGGGTAG-CTTAGGCATACGG
*
12886470 AGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCGGCAACAGGATTGATAGCACACA
1 AGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAACAGGATCGATAGCACACA
** * * * * *
12886534 GGGAGGATTAGGCTGGTCCCCGACTTATGCATTCTACCTCTCCGATCGGCTGAGTGCCCGCATGC
65 GGG-GGACCAGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC
* *
12886599 TTGTTTCGTGGGCTAGCTTAGGCATACGG
129 TCGTTTCATGGG-TAGCTTAGGCATACGG
12886628 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
12886647 CATACGAAGT
Statistics
Matches: 264, Mismatches: 60, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 48 0.18
158 92 0.35
159 118 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAACAGGATCGATAGCACACAG
GGGGACCAGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTAGCTTAGGCATACGG
Found at i:12886649 original size:26 final size:26
Alignment explanation
Indices: 12886620--12886671 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12886610 GCTAGCTTAG
*
12886620 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
12886646 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
12886672 TATTGGATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:12887023 original size:26 final size:26
Alignment explanation
Indices: 12886984--12887039 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12886974 TGGGTTGACT
*
12886984 TAAGCAAACGGAGTTCATCCCCAGTC
1 TAAGCAAACCGAGTTCATCCCCAGTC
* *
12887010 TAAGCATACCGAGTTCATTCCCAGTC
1 TAAGCAAACCGAGTTCATCCCCAGTC
12887036 TAAG
1 TAAG
12887040 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCAAACCGAGTTCATCCCCAGTC
Found at i:12887498 original size:158 final size:157
Alignment explanation
Indices: 12887013--12887534 Score: 512
Period size: 158 Copynumber: 3.3 Consensus size: 157
12887003 CCCAGTCTAA
* * * * * *
12887013 GCATACCGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGATAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGACCA-ACCGGACCGAGGGTTACGATAGCAGGATCGAT
* * *
12887077 AGCACGCT-GAGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGTG
64 AGCACG-TAGAGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTG
* * * *
12887141 CCCACTCGCCCGTTTTGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * * *
12887171 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGCTATGGTAGCGGGATTGAGA
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AACCGGACCGAGGGTTACGATAGCAGGATCGATA
* * * * * *
12887236 GCACGCAGAGGGGGACCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGC
65 GCACGTAGA-GGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGC
* * *
12887301 CCGAACGCTCATTTCGTGGGTTGACTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
12887330 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACCGAGGGTTACGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGA-CCAACCGGACCGAGGGTTACGATAGCAGGATCGAT
* * * * * * *
12887394 AGCACGTAG-GGGGTATCAGCCCGGTCCTTGGCTTACACATTCTGCCTCTCCGATCGACTGAGCG
64 AGCACGTAGAGGGG-ACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTG
* * *
12887458 CCTGCACGCTCGTTCCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
12887488 GCATATGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAACCGGACCGAGGGTT
12887535 GTGGTAGCAG
Statistics
Matches: 287, Mismatches: 68, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 10 0.03
158 150 0.52
159 123 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAACCGGACCGAGGGTTACGATAGCAGGATCGATAG
CACGTAGAGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12887694 original size:26 final size:26
Alignment explanation
Indices: 12887658--12887707 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12887648 GTTGACTTAG
*
12887658 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
12887684 GCATAAGGAGTTCATTCCCAGTCT
1 GCATAAGGAGTTCATCCCCAGTCT
12887708 GAGATCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:12888668 original size:26 final size:26
Alignment explanation
Indices: 12888594--12888671 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
12888584 GTTGACTTAG
*
12888594 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12888620 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12888646 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12888672 CATCAGACCA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12889537 original size:26 final size:26
Alignment explanation
Indices: 12889500--12889552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12889490 GTTGACTTAG
*
12889500 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12889526 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12889552 G
1 G
12889553 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12890033 original size:26 final size:26
Alignment explanation
Indices: 12890003--12890055 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12889993 GTTGGCTTAT
*
12890003 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12890029 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12890055 G
1 G
12890056 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12891774 original size:158 final size:158
Alignment explanation
Indices: 12891546--12891834 Score: 400
Period size: 158 Copynumber: 1.8 Consensus size: 158
12891536 GCACGCATAA
* ** **
12891546 GGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTCTTCGACCGGTTCAGCGGCCGCACGCTT
1 GGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTTCGACCGACTCAGCACCCGCACGCTT
*
12891611 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGA-CGGGATCGAGGG
66 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATC-GGATCAAGGG
12891675 TTTCGACAGCAGGATCGACAGCACGTAGG
130 TTTCGACAGCAGGATCGACAGCACGTAGG
* * * * * *
12891704 GGGGACCGGGTCGGTCCCTGACTTGCGCATTCTGCCTCTTCGACTGACTGAGCACCCGCACGCTT
1 GGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTTCGACCGACTCAGCACCCGCACGCTT
* * * * * *
12891769 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTTTAAGATTGGATCGGATCAAGGGT
66 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGATCAAGGGT
12891834 T
131 T
12891835 GTGGCAGTAG
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
158 111 0.99
159 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
GGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTTCGACCGACTCAGCACCCGCACGCTT
GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGATCAAGGGT
TTCGACAGCAGGATCGACAGCACGTAGG
Found at i:12892280 original size:159 final size:158
Alignment explanation
Indices: 12892037--12892329 Score: 396
Period size: 159 Copynumber: 1.8 Consensus size: 158
12892027 GGGTTACGGT
* * * * *
12892037 AGTAGGATCGACAGCACGCAGGGGGGACCAGGCTGATCCTCGGCTTGCGCATTCTACCTTTTCGG
1 AGTAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGG
* * *
12892102 CTCGCTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 CTCGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCT
12892167 AAGCCCCAATTGGATCATGGGTTGTGGC
131 AAGCCCCAATTGGATCATGGGTTGTGGC
*
12892195 AGTAGGA-CTGACAGCACACAGAGGGGGACC-GTGCCGATCC-CTGGCTTGCACATTCTGCCTCT
1 AGTAGGATC-GACAGCACACAG-GGGGGACCAG-GCCGATCCTC-GGCTTGCACATTCTACCTCT
** * *
12892257 CCGG-TCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCA
62 CCGGCTCG-CTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCA
12892321 TGTCTAAGC
126 TGTCTAAGC
12892330 ATATGGAGTT
Statistics
Matches: 117, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
157 1 0.01
158 23 0.20
159 93 0.79
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
AGTAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGG
CTCGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCT
AAGCCCCAATTGGATCATGGGTTGTGGC
Found at i:12892338 original size:26 final size:26
Alignment explanation
Indices: 12892302--12892354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12892292 GTTGGCTTAG
12892302 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
*
12892328 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
12892354 G
1 G
12892355 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:12893233 original size:26 final size:26
Alignment explanation
Indices: 12893203--12893253 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12893193 TTTGACATAG
12893203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12893229 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12893254 GGATCAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12893591 original size:159 final size:159
Alignment explanation
Indices: 12893229--12894685 Score: 857
Period size: 159 Copynumber: 9.2 Consensus size: 159
12893219 CCCAGTCTAA
* * * *
12893229 GCATACGGAGTTCATTCCCA-GTCTAGGATCAAATC-GATCCGAGGGTTGTGGCAGCAGGA-TCG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGA-CCGAGGGTTGTGGCAGCAGGACT-G
** * * * * *
12893291 ACAGCACGCAG-GGGGGACCATGCCGTTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAG
63 ACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAG
* * * * *
12893355 TGCCTGTATGCTCGTTTCGTCGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
12893387 GCATAGGGAGTTCATTCCACATCTAAGCCCCA-ACC-GAACCGAGGGTTGTGGCAGCGGGACTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAG-ACCGAGGGTTGTGGCAGCAGGACTGA
* ** ** * * * * *
12893450 TAGCACGTTGAGGGGGATTGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGC
64 CAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
* *
12893515 GCCTGCACGCTCGTTTCGTGGGTTGACTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
12893546 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGA-TCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACT-GA
* * * * * * *** * *
12893609 TAGTACGCA-AGCTGGGATCGGG-TCGGTCCTCGGCTTATACATTCTGCCTCTTCGATCGACTGA
64 CAGCACGCAGAG-GGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGA
* * *
12893672 GCGCCCGCACGCCCATTTCATGGGTTGGCTTAG
127 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
12893705 GCATAGGGAGTTCTTTCCATGTCTAAGCGCCAG--CAGGATCGAGGGTTGTGGCAGCATGA-TCG
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCA-GACCGAGGGTTGTGGCAGCAGGACT-G
* * * * ** * * * ** * * *
12893767 GCAACGCGTAGAGGGGGGTCGGGGTAATCCCCAGCTTGAACATTCTGCCTCTCCAACCGGTTGAG
63 ACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAG
* * * *
12893832 CACCCACACGCTTGTTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** ** *
12893864 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGATCGAGGGTTACGGCAATAGGAC-CAG
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGTGGCAGCAGGACTGA-
** * * * * **
12893927 CAGCACGCAG-GAGGGGACCAAGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCAACCGATTGAG
64 CAGCACGCAGAG-GGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAG
* * * *
12893991 CACCCGGACACTCGTTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * *
12894023 CCATACAGAATTCATTCCATGTCTAAGCCCTAG-CCAGATCGAGGGCTGTGGCAGC-GACACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AGACCAGACCGAGGGTTGTGGCAGCAG-GACTGA
* ** * * * * * * * *
12894086 CAACACGCAGAAAGGGACCAGGTTGATCCCCGAG-TTGCGCATTATCCCTCTTCAATCAGCTCAG
64 CAGCACGCAGAGGGGGACCGGGCTGATCCCCG-GCTTGCGCATTCTGCCTCTTCGACCGGCTGAG
* ** * * * *
12894150 TGCCCAAACGCTCATTTCGGGGGTTGACTTTG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
12894182 GCATACGAAGTTCATTCCCA-GTCTAAGATC-GAACTGAACCGAGGGTTGCGACAGCAGGA-TCA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAG-ACCGAGGGTTGTGGCAGCAGGACT-G
* * * * * * ***
12894244 ACAGCAC-CTA-ATGGGGGACCGGACCGGTCCCCGGCTTGTGCATACTGCCTCTCCGGTTGGCTG
63 ACAGCACGC-AGA-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTG
* * * *
12894307 AGCGCCCGTACGCTCCTTTCGCGGGTTGACTTAG
126 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ****
12894341 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTACAACAGCAGGA-TCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACT-GA
* ** * * * *
12894404 CAGCACGTA-AGGGGGATTGGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
64 CAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
* * *
12894468 GCCCGCATGCCCGTTTCGTGGGTTGGCTTAA
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * ** * *
12894499 GAATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCAAACCGAGGGTTGTGGTAGTGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AGACCAGACCGAGGGTTGTGGCAGCAGGACTGAC
* * * * * * *
12894563 AGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGCTGGCTTAGCT
65 AGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
* * *
12894628 CCCGAACGCTCATTTCGTGGGTTGACTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
12894658 GCATACAGAGTTCGTTCCCA-GTCTAAGA
1 GCATACGGAGTTCATT-CCATGTCTAAGA
12894686 TCGGATCGGA
Statistics
Matches: 1003, Mismatches: 256, Indels: 79
0.75 0.19 0.06
Matches are distributed among these distances:
157 7 0.01
158 183 0.18
159 790 0.79
160 23 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACTGACA
GCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12894511 original size:158 final size:159
Alignment explanation
Indices: 12894157--12894525 Score: 422
Period size: 158 Copynumber: 2.3 Consensus size: 159
12894147 CAGTGCCCAA
* * ** * *
12894157 ACGCTCATTTCGGGGGTTGACTTTGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGAACC
1 ACGCTCCTTTCGCGGGTTGACTTAAGAATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACC
* * * *
12894222 GAGGGTTGCGACAGCAGGATCAACAGCACCTAATGGGGGACCGGACCGGTCCCCGGCTTGTGCAT
66 GAGGGTTACAACAGCAGGATCAACAGCACCTAATGGGGGACCGGACCGGTCCCCAGCTTGCGCAT
* * *
12894287 ACTGCCTCTCCGGTTGGCTGAGCGCCCGT
131 ACTGCCTCTCCGATCGGCTGAGCGCCCGC
* * *
12894316 ACGCTCCTTTCGCGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCGGAC
1 ACGCTCCTTTCGCGGGTTGACTTAAGAATACGAAGTTCATTCCCAGTCTAAGATCGA-ACCGAAC
* * * ** *
12894380 TGAGGGTTACAACAGCAGGATCGACAGCACGTAA-GGGGGATTGGGCCGGTCCCCAGCTTGCGCA
65 CGAGGGTTACAACAGCAGGATCAACAGCACCTAATGGGGGACCGGACCGGTCCCCAGCTTGCGCA
* *
12894444 TTCTGCCTCTTCGATCGGCTGAGCGCCCGC
130 TACTGCCTCTCCGATCGGCTGAGCGCCCGC
* * * * *
12894474 ATGC-CCGTTTCGTGGGTTGGCTTAAGAATAGGGAGTTCATT-CCATGTCTAAG
1 ACGCTCC-TTTCGCGGGTTGACTTAAGAATACGAAGTTCATTCCCA-GTCTAAG
12894526 CCCTAGTCAA
Statistics
Matches: 180, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
157 5 0.03
158 89 0.49
159 86 0.48
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
ACGCTCCTTTCGCGGGTTGACTTAAGAATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACC
GAGGGTTACAACAGCAGGATCAACAGCACCTAATGGGGGACCGGACCGGTCCCCAGCTTGCGCAT
ACTGCCTCTCCGATCGGCTGAGCGCCCGC
Found at i:12895783 original size:26 final size:26
Alignment explanation
Indices: 12895747--12895799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12895737 GTTGACTTAG
12895747 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12895773 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12895799 G
1 G
12895800 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12896114 original size:159 final size:158
Alignment explanation
Indices: 12895773--12896114 Score: 366
Period size: 159 Copynumber: 2.2 Consensus size: 158
12895763 CCCAGTCTAA
* *
12895773 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATTTGCA
1 GCATACAGAGTTCATTCCTAGTCTAAGACCAGATCGAACCGAGGGTTACGGCAGCAGGATTTGCA
* * * * ***
12895838 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCAACTGGTTGAGCAAC
66 ACACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTACAACCGGCACAGCAAC
* *
12895903 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGAACGCCCGTTTCATGGGTTGACTTAG
** * ** * *
12895931 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTGGTAGCGGGA-TTG
1 GCATACAGAGTTCATTCCTA-GTCTAAG-ACCAGATCGAACCGAGGGTTACGGCAGCAGGATTTG
* * * * * * *
12895993 ACAACACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTACGACCGGCACAG
64 -CAACACGCAG-GGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTACAACCGGCACAG
*** *
12896058 TGCCCGAACGCTCGTTTCATGGGTTGACTTAG
127 CAACCGAACGCCCGTTTCATGGGTTGACTTAG
12896090 GCATACAGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATTCCTAGTCTA
12896115 TGATTAGACC
Statistics
Matches: 148, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.03
158 53 0.36
159 90 0.61
160 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCTAGTCTAAGACCAGATCGAACCGAGGGTTACGGCAGCAGGATTTGCA
ACACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTACAACCGGCACAGCAAC
CGAACGCCCGTTTCATGGGTTGACTTAG
Found at i:12896284 original size:26 final size:26
Alignment explanation
Indices: 12896248--12896300 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12896238 GTTGGCTTAG
*
12896248 GCATACGGAGTTCATTCCCT-GTCTAA
1 GCATACGGAGTTCAAT-CCTAGTCTAA
*
12896274 GCATATGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
12896300 G
1 G
12896301 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:12898010 original size:26 final size:26
Alignment explanation
Indices: 12897971--12898023 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12897961 GTTGACTTAG
12897971 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
12897997 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12898023 G
1 G
12898024 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12898313 original size:159 final size:158
Alignment explanation
Indices: 12898031--12898340 Score: 363
Period size: 159 Copynumber: 2.0 Consensus size: 158
12898021 AAGATCGGAC
*
12898031 CGGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAGGGGGGACCAAGCCGATCTCCGGCTTG
1 CGGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAGCGGGGACCAAGCCGATCTCCGGCTTG
* * * ** *
12898096 TGCATTTTCCCTCTCCGGTCGGCTGAGTGCCCTCATACCCATTTCACGGGTTCGCTTAGGCATAG
66 CGCATTATCCCTCTCCGGCCGGCTGAGTGCCCGAACACCCATTTCACGGGTTCGCTTAGGCATAG
* *
12898161 GGAGTTCATTCCCTGTCTAAGCCCCAGT
131 GGAATTCATTCCCAGTCTAAGCCCCAGT
* ** * * * *
12898189 CGGACTGAGGGTTGTGGCAGCAGGATCGGTAGCATGCAGACGGGGACCAAGCCGTTC-CCTGGCT
1 CGGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAG-CGGGGACCAAGCCGATCTCC-GGCT
* * * * * **
12898253 TGCGCATTATGCCTTTCTGGCCGGCTTAGTGCCCGAACACTCATTTCTTGGGTT-GACTTAGGCA
64 TGCGCATTATCCCTCTCCGGCCGGCTGAGTGCCCGAACACCCATTTCACGGGTTCG-CTTAGGCA
*
12898317 TATGGAATTCATTCCCAGTCTAAG
128 TAGGGAATTCATTCCCAGTCTAAG
12898341 ATCGAACCAA
Statistics
Matches: 125, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 36 0.29
159 89 0.71
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
CGGACCGAGGGTTACGGCAGCAAGATCGATAGCACGCAGCGGGGACCAAGCCGATCTCCGGCTTG
CGCATTATCCCTCTCCGGCCGGCTGAGTGCCCGAACACCCATTTCACGGGTTCGCTTAGGCATAG
GGAATTCATTCCCAGTCTAAGCCCCAGT
Found at i:12898360 original size:159 final size:158
Alignment explanation
Indices: 12897997--12898486 Score: 410
Period size: 158 Copynumber: 3.1 Consensus size: 158
12897987 CCCAGTCTAA
* * ** *
12897997 GCATACGGATTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAAGATCGATA
1 GCATACGGAATTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * *
12898062 GCACGCAGGGGGGACCAAGCCGATCTCCGGCTTGTGCATTTTCCCTCTCCGGTCGGCTGAGTGCC
66 GCACGCAGCGGGGACCAAGCCGATCTCCGGCTTGCGCATTATCCCTCTCCGGCCGGCTGAGTGCC
** *
12898127 CTCATACCCATTTCACGGGTTCGCTTAG
131 CGAACACCCATTTCACGGGTTCGCTTAG
* * * ** * ** * *
12898155 GCATAGGGAGTTCATTCCCTGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAATTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * * *
12898220 GCATGCAGACGGGGACCAAGCCGTTC-CCTGGCTTGCGCATTATGCCTTTCTGGCCGGCTTAGTG
66 GCACGCAG-CGGGGACCAAGCCGATCTCC-GGCTTGCGCATTATCCCTCTCCGGCCGGCTGAGTG
* **
12898284 CCCGAACACTCATTTCTTGGGTT-GACTTAG
129 CCCGAACACCCATTTCACGGGTTCG-CTTAG
* ** * * * *
12898314 GCATATGGAATTCATTCCCAGTCTAAGATCGAACCAAACCAAGGGTTGTGACAGTAGGATCGACA
1 GCATACGGAATTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* *** ** * * * * * * *
12898379 GCACGCAGGGGGGACTGGGTTGGTCTCCAGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGTGCC
66 GCACGCAGCGGGGACCAAGCCGATCTCCGGCTTGCGCATTATCCCTCTCCGGCCGGCTGAGTGCC
* * ** *
12898444 CGCAA-GCTCATTTCGTGGGTTGGCTTAG
131 CG-AACACCCATTTCACGGGTTCGCTTAG
*
12898472 GCATACGGAGTTCAT
1 GCATACGGAATTCAT
12898487 CCATGTCTAA
Statistics
Matches: 260, Mismatches: 66, Indels: 12
0.77 0.20 0.04
Matches are distributed among these distances:
158 134 0.52
159 126 0.48
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAATTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGCGGGGACCAAGCCGATCTCCGGCTTGCGCATTATCCCTCTCCGGCCGGCTGAGTGCC
CGAACACCCATTTCACGGGTTCGCTTAG
Found at i:12898901 original size:26 final size:26
Alignment explanation
Indices: 12898865--12898917 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12898855 GTTGGCTTAG
12898865 GCATAAGGAGTTCATTCC-ATGTCTAA
1 GCATAAGGAGTTCATTCCTA-GTCTAA
12898891 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
12898917 G
1 G
12898918 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:12898963 original size:184 final size:182
Alignment explanation
Indices: 12898643--12899260 Score: 532
Period size: 184 Copynumber: 3.4 Consensus size: 182
12898633 TCTCCAGCCA
* * * *
12898643 GCTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACA-GTGTTCA-TCC-TCGATCT
1 GCTGAGCGCACGCATGCTCATTTCATGGGTTGACTTAGGCATA-AGGAGTTCATTCCAT-G-TCT
* * ** * * *
12898705 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTGGCAGCAGGATCGA
63 AAGCATA-AGAGTTCATTCCCAGTCTAAGATCGGATCGGACTAAGGGTTGCGGCAGCAGGATCGG
* * * *
12898770 TAGCACGCAGGGGGGATCGGGCCGATCCCAGGCTTACGCATTCTACCTTTTCGATCG
127 TAGCACGCAGGGGGGACCGGGCCGATCCCA-GCTTACGCATTCTACCTCTCCGACCG
* * * *
12898827 GCTGATCGCAGGCATGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCACGCATGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAG
* * * *
12898892 CATAAGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGTAGGATCGGTAG
66 CATAA-GAGTTCATTCCCAGTCTAAGATCGGATCGGACTAAGGGTTGCGGCAGCAGGATCGGTAG
* * * * * **
12898957 CACGCAGGGGGGGCTGAGCTGATCCCCAGCTTTCGCATTCTGTCTCTCCGACCG
130 CACGCAGGGGGGACCGGGCCGAT-CCCAGCTTACGCATTCTACCTCTCCGACCG
* * * * *
12899011 GCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCA-GTCTAA
1 GCTGAGCGCACGCATGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCAT-TCCATGTCTAA
* * * * * *
12899075 GCATGCAGAGTTCATTCCCAATCTAGGAT-GTGATTGGACTAAGGGTTACGGTAGCAGGATCGGT
65 GCAT-AAGAGTTCATTCCCAGTCTAAGATCG-GATCGGACTAAGGGTTGCGGCAGCAGGATCGGT
* * * ** * ***
12899139 AGCTCACAGGGGGGACCAGGCCGATCCTTGGCTTTTACG--TTCTACCTCTCTGGTTG
128 AGCACGCAGGGGGGACCGGGCCGATCC-CAGC--TTACGCATTCTACCTCTCCGACCG
* * * * * * * *
12899195 GTTGAGCACCCGTACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GCTGAGCGCACGCATGCTC-ATTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAA
12899259 GC
65 GC
12899261 CCCAGCTGGA
Statistics
Matches: 348, Mismatches: 73, Indels: 26
0.78 0.16 0.06
Matches are distributed among these distances:
183 9 0.03
184 322 0.93
185 12 0.03
186 5 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (182 bp):
GCTGAGCGCACGCATGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAG
CATAAGAGTTCATTCCCAGTCTAAGATCGGATCGGACTAAGGGTTGCGGCAGCAGGATCGGTAGC
ACGCAGGGGGGACCGGGCCGATCCCAGCTTACGCATTCTACCTCTCCGACCG
Found at i:12899995 original size:26 final size:26
Alignment explanation
Indices: 12899959--12900008 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12899949 TTGGCTTAGG
12899959 ATACGGAGTTCATT-CCATGTCTAATC
1 ATACGGAGTTCATTCCCA-GTCTAATC
12899985 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
12900009 GATCGAACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAATC
Found at i:12900373 original size:26 final size:26
Alignment explanation
Indices: 12900337--12900389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12900327 GTTGACTTAG
*
12900337 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
12900363 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12900389 G
1 G
12900390 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12900863 original size:158 final size:158
Alignment explanation
Indices: 12900363--12900864 Score: 407
Period size: 158 Copynumber: 3.2 Consensus size: 158
12900353 CCTAGTCTAA
** * * *
12900363 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAACAGGATC-AGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGA-T
* * * * * * * * *
12900427 AGCACGCAAGGGGGA-TCGGGTCGATTCTCGACTTACGCATTCTGCTTCTCC-G-ACCGACTGAG
65 AGCACACAGGGGGGACT-AGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTA--GGCTAAG
* *
12900489 CGCCCGCATGCCCGTTTCATGGGTTGGCTTAG
127 CGCCCGAATGCTCGTTTCATGGGTTGGCTTAG
** ** *
12900521 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCGGT-G-A-GAC
1 GCATACAGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGG-T-T-GCGGTAGCAGGAT
* ** * * * * * *
12900581 CGGTAGCACTTAGAGGGGGACCGAGCT-GATCCCTGGCTTGCGCATTATGCCTCTCCAACTA-GC
61 CGATAGCACACAG-GGGGGA-CTAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCC-AGTAGGC
* * * *
12900644 TTAGTGCCCGAATGCTCATTTCATGGGTTGACTTAG
123 TAAGCGCCCGAATGCTCGTTTCATGGGTTGGCTTAG
* * * * *
12900680 GCATACTGAGCTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
* *
12900745 GCACACAGGGGGGACTAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCAGTAGGCTAAACGCC
66 GCACACAGGGGGGACTAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTAGGCTAAGCGCC
* * *
12900810 CGTACGCTCGTTTCGTGGGTTGGCTTAG
131 CGAATGCTCGTTTCATGGGTTGGCTTAG
12900838 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
12900865 CATACGGAGT
Statistics
Matches: 262, Mismatches: 62, Indels: 40
0.72 0.17 0.11
Matches are distributed among these distances:
156 5 0.02
157 15 0.06
158 127 0.48
159 105 0.40
160 6 0.02
161 3 0.01
162 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACACAGGGGGGACTAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTAGGCTAAGCGCC
CGAATGCTCGTTTCATGGGTTGGCTTAG
Found at i:12900874 original size:26 final size:26
Alignment explanation
Indices: 12900838--12900890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12900828 GTTGGCTTAG
12900838 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12900864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12900890 G
1 G
12900891 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12901077 original size:26 final size:26
Alignment explanation
Indices: 12901047--12901099 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12901037 GTTGATTTAG
12901047 GCATACAGAGTTCATCTCC-AGTCTAA
1 GCATACAGAGTTCAT-TCCTAGTCTAA
12901073 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12901099 G
1 G
12901100 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12902415 original size:26 final size:26
Alignment explanation
Indices: 12902369--12902421 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12902359 GTTGACTTAG
*
12902369 GCATACGGAGTTCATCTCCAGTTTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
12902395 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
12902421 G
1 G
12902422 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:12902697 original size:159 final size:158
Alignment explanation
Indices: 12902435--12902739 Score: 430
Period size: 159 Copynumber: 1.9 Consensus size: 158
12902425 TAACTGGATT
* *
12902435 GAGGGTTACGGTAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATT
1 GAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCCGGCTTGCGCATT
* * * * *
12902500 CTGCCTCTCCGGCCGACTGTGTGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
12902565 CAGTACATGTCTAAGCCCCAGCGGGACC
131 CAGTACATGTCTAAGCCCCAGCGGGACC
* * * * * *
12902593 GAGGGTTATGGTAGCGGGATCGACAGCACGTAGAGGGGGACCGGGTCAATCCCTGGCTTGCGCAT
1 GAGGGTTACGGTAGCAGGATCGACAGCACGCAG-GGGGGACCAGGCCAATCCCCGGCTTGCGCAT
** **
12902658 TCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* *
12902723 TCATTCCATGTCTAAGC
130 TCAGTACATGTCTAAGC
12902740 ATACGGAGTT
Statistics
Matches: 127, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
158 29 0.23
159 98 0.77
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
GAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCCGGCTTGCGCATT
CTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CAGTACATGTCTAAGCCCCAGCGGGACC
Found at i:12902713 original size:440 final size:441
Alignment explanation
Indices: 12901917--12902743 Score: 1140
Period size: 440 Copynumber: 1.9 Consensus size: 441
12901907 TTCGTTTCGT
*
12901917 GGGTTGACTTAGGCATACGAAGTTTATCCCCAGCCGAAGCAAACGGAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGCCGAAGCAAACGGAGTTCATTCCCAGTCTAAG
* * *
12901982 ATCAGACTGAACCGAGGGTTACGGTAGCAGGATCGACAGCACGCATGGGGGACCGGGTCGATCCC
66 ATCAGACTGAACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCC
* **
12902047 CGGCTCGCGCATTCTGCCTCTCCGATAGACTAAGCGCCCGCACGCTTGTGTCATGGGTTGGCTTA
131 CGGCTCGCGCATTCTGCCTCTCCGACAGACTAAGCGCCCGCACGCCCGTGTCATGGGTTGGCTTA
* * * *
12902112 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGCTGTGGCAGCGGGACCGGC
196 GGCATAGGGAGTTCAGTACATGTCTAAGCCCCAGTCGGACCGAGGGCTATGGCAGCGGGACCGAC
* * * **
12902177 ATCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTATTCGGTCGGTTCAACG
261 AGCACACAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTATCCGACCGGTTCAACG
**
12902242 CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATACCT
326 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGCATACCT
12902305 GGCTTGCTCATCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTTGTTGTAG
390 GGCTTGCTCATCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTTGTTGTAG
* * *** *
12902357 GGGTTGACTTAGGCATACGGAGTTCATCTCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGCCGAAGCAAACGGAGTTCATTCCCAGTCTAAG
* ** *
12902422 ATCTA-ACTGGATTGAGGGTTACGGTAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCGATCC
66 ATC-AGACTGAACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCC
* * * ** * * *
12902486 CCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGTGTGCTCGCACGCCCGTTTCATGGGTTGGCTT
130 CCGGCTCGCGCATTCTGCCTCTCCGACAGACTAAGCGCCCGCACGCCCGTGTCATGGGTTGGCTT
* * *
12902551 AGGCATAGGGAGTTCAGTACATGTCTAAGCCCCAG-CGGGACCGAGGGTTATGGTAGCGGGATCG
195 AGGCATAGGGAGTTCAGTACATGTCTAAGCCCCAGTC-GGACCGAGGGCTATGGCAGCGGGACCG
** * * * * * *
12902615 ACAGCACGTAGAGGGGGACCGGGTCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAG
259 ACAGCACACAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTATCCGACCGGTTCAA
** * *
12902680 CGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
324 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAC
12902744 GGAGTTCATT
Statistics
Matches: 332, Mismatches: 51, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
439 4 0.01
440 323 0.97
441 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (441 bp):
GGGTTGACTTAGGCATACGAAGTTCATCCCCAGCCGAAGCAAACGGAGTTCATTCCCAGTCTAAG
ATCAGACTGAACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCC
CGGCTCGCGCATTCTGCCTCTCCGACAGACTAAGCGCCCGCACGCCCGTGTCATGGGTTGGCTTA
GGCATAGGGAGTTCAGTACATGTCTAAGCCCCAGTCGGACCGAGGGCTATGGCAGCGGGACCGAC
AGCACACAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTATCCGACCGGTTCAACG
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACCTG
GCTTGCTCATCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTTGTTGTAG
Found at i:12902742 original size:26 final size:25
Alignment explanation
Indices: 12902712--12902763 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
12902702 GTTGGCTTAG
12902712 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
12902738 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
12902763 G
1 G
12902764 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:12903373 original size:26 final size:26
Alignment explanation
Indices: 12903344--12903396 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12903334 GTTGACTTAG
12903344 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12903370 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12903396 G
1 G
12903397 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12905017 original size:159 final size:160
Alignment explanation
Indices: 12904811--12905187 Score: 440
Period size: 159 Copynumber: 2.4 Consensus size: 160
12904801 CGGCTGAGCA
* * *
12904811 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* *
12904875 CGGACAGAGGGTAGTGGTAGCGA-GATCGACAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCT
66 CAGACAGAGGGTAGTGGTAGC-ATGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCTGGCT
* * * *
12904939 T-GGACATTATGCCTCTTCGGCCGATTCAGTG
130 TAGG-CATTATGCCTCTCCAGCCGACTCAGCG
* * * ** * * *
12904970 CTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTAATTCCCA-GTGTAAG-ATCAGA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * * * *
12905033 CCAGACCGAGGGTTGTGGTAGCATGATCGATAGCACGCAGGGAGGGACTGAGCCGGTCCCTGGCT
65 CCAGACAGAGGGTAGTGGTAGCATGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCTGGCT
* * * *
12905098 TATGCATTCTGCCTCTCCAGTCGACTGAGCG
130 TAGGCATTATGCCTCTCCAGCCGACTCAGCG
*
12905129 CCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12905188 TACAGAGTTC
Statistics
Matches: 177, Mismatches: 35, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
158 7 0.04
159 165 0.93
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACAGAGGGTAGTGGTAGCATGATCGACAGCACGCAGAGAGGGACCGAGCCGATCCCTGGCTT
AGGCATTATGCCTCTCCAGCCGACTCAGCG
Found at i:12905195 original size:26 final size:26
Alignment explanation
Indices: 12905159--12905211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12905149 GTTGGCTTAG
*
12905159 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12905185 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12905211 G
1 G
12905212 ATCGAACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12905575 original size:26 final size:26
Alignment explanation
Indices: 12905539--12905591 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12905529 GTTGGCTTAG
12905539 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12905565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12905591 G
1 G
12905592 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12906289 original size:26 final size:26
Alignment explanation
Indices: 12906259--12906308 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12906249 GTTGACTTAG
12906259 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
12906285 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
12906309 GAGATCGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12906822 original size:158 final size:157
Alignment explanation
Indices: 12906379--12906824 Score: 445
Period size: 158 Copynumber: 2.8 Consensus size: 157
12906369 CTGATCTCTG
* * *
12906379 GCTTGCACATTCTGCCTCTTCGATCGGCTGAGCGCCCGCAGCCCGTTTCATGGATTGGCTTAGGC
1 GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCAGCTCGTTTCATGG-TTGGCTTAGGC
* ** * * * * **
12906444 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GACCAATGGTTATGGCAGCGGGACTGACAAT
65 ATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGTAGCAGGACCGACAGC
* * *
12906508 ATGCGGAGGGGGACCAGACCGATCCCCA
130 ACGCAGAGGGGGACCAGACCGAACCCCA
* * * * * *
12906536 GCTTGCGCATTATGCCTCTCCGGTCGGTTCAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCA-GCTCGTTTCAT-GGTTGGCTTAGG
* ** * * *
12906601 CATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGA-TCGAGGGTTACGGTAGCAGGATCGA
64 CATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACT-GAGGGTTATGGTAGCAGGACCGA
* * ***
12906663 CAGCACGCAG-GGGGGATCGGGTTGAACCCCA
126 CAGCACGCAGAGGGGGACCAGACCGAACCCCA
* *
12906694 GCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCA-GCTCGTTTCAT-GGTTGGCTTAGG
* *
12906759 CATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGT-GATAGGACCGACA
64 CATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGTAG-CAGGACCGACA
12906823 GC
128 GC
12906825 GGGATCAGCA
Statistics
Matches: 229, Mismatches: 50, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 40 0.17
158 156 0.68
159 33 0.14
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCAGCTCGTTTCATGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTATGGTAGCAGGACCGACAGCA
CGCAGAGGGGGACCAGACCGAACCCCA
Found at i:12906971 original size:26 final size:26
Alignment explanation
Indices: 12906942--12906994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12906932 GTTGACTTAG
*
12906942 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12906968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12906994 G
1 G
12906995 ATCGAACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12907467 original size:26 final size:26
Alignment explanation
Indices: 12907416--12907468 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12907406 GTTGGCTTAG
*
12907416 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
12907442 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
12907468 G
1 G
12907469 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:12914058 original size:26 final size:26
Alignment explanation
Indices: 12914022--12914074 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12914012 GTTCACTTAG
*
12914022 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12914048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12914074 G
1 G
12914075 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12914527 original size:158 final size:158
Alignment explanation
Indices: 12914048--12914549 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 158
12914038 CCCAGTCTAA
** *
12914048 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGA-TCGAGGGTTGCGGCAGTAGGATC-A
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGA
* ** * * * * * * *
12914110 GCAGCACACAGGAAGCACCGGGCCAAACCCCGGCTTATGCATTCTGCCTATCCGATCGGCCAAGT
64 -CAGCACATAGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAGT
* *
12914175 GCCCGCACGCCCGTTTCGTGGGTTGGCCTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
12914206 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACAGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATC-GA
* * * * * *
12914269 CAGCACACATA-GGGGGACCAGGTCGATCCTCGGCTTGCT-CATTTTGCCTCTCCGGTTGGCTTA
64 CAG--CACATAGGGGGGACCGGGCCGATCCTCGGCTTG-TGCATTCTGCCTCTCCGATCGGCTAA
* * * *
12914332 GCGCCCGCATGCTCGTTTCGTGGGTTGACTTAA
126 GTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
12914365 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
12914429 AGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTCTGACCAGCTGAGTGC
65 AGCACATAGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAGTGC
* *
12914494 CCGCACGCTCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
12914523 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12914550 CATACAGAGT
Statistics
Matches: 272, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 13 0.05
158 137 0.50
159 112 0.41
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACATAGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12914553 original size:26 final size:26
Alignment explanation
Indices: 12914523--12914575 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12914513 GTTGGCTTAG
*
12914523 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12914549 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12914575 G
1 G
12914576 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12914760 original size:196 final size:196
Alignment explanation
Indices: 12914420--12914942 Score: 805
Period size: 196 Copynumber: 2.7 Consensus size: 196
12914410 TTACGGTAGC
* * * * * *
12914420 AGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTCTGACCA
1 AGGATTGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCA
12914485 GCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
12914550 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGACCAGCAG
131 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAACAGGACCAGCAA
12914615 T
196 T
*
12914616 AGGATTGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCA
1 AGGATTGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCA
* * *
12914681 GCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTCTAAG
66 GCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
*
12914746 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAACAGGACCAGCAA
131 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAACAGGACCAGCAA
12914811 T
196 T
* ** * * *
12914812 AGGATTGACAGCATGCAGGGGGGACCGAACCGATCCCCAGCTTACGTATTCTACCTCTCCGACC-
1 AGGATTGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCA
** * * * *
12914876 GACTGAGCACCTGCATGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAA
66 G-CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12914941 GC
130 GC
12914943 CCCAGCCGGA
Statistics
Matches: 297, Mismatches: 29, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
195 1 0.00
196 296 1.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
AGGATTGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCA
GCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAACAGGACCAGCAA
T
Found at i:12914768 original size:26 final size:26
Alignment explanation
Indices: 12914719--12914771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12914709 GTTGGCTTAG
*
12914719 GCATACAGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
12914745 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
12914771 G
1 G
12914772 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:12915476 original size:158 final size:158
Alignment explanation
Indices: 12915164--12915766 Score: 553
Period size: 159 Copynumber: 3.8 Consensus size: 158
12915154 AGGGTCACGA
* * * *
12915164 CAGTAGGATCAACAGCACGCTA-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 CAGTGGGATCAGCAGCACGC-AGGGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCC
* * *
12915228 GGTCGACTGAGTGCCCTGCATGCCCGTTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATG
65 GGTCGACTGAGTGCCC-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * **
12915293 TCTAAGCCACAGCCGGATTGAGGGTTGTGG
129 CCTAAGCCACAGCCAGACCGAGGGTTGTGG
* *
12915323 CAGTGGGATCAGCAGCACGTC-GGGGGGACCGGGCTGATCCTTGGCTTGCACATTCTGCCTCTCC
1 CAGTGGGATCAGCAGCACG-CAGGGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCC
* *
12915387 GG-CCAGCTGAGTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
65 GGTCGA-CTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
*
12915451 CCTAAGCCCCAGCCAGACCGAGGGTTGTGG
129 CCTAAGCCACAGCCAGACCGAGGGTTGTGG
* * * * *
12915481 TAGCGGGA-CCGACAGCACGCAGAGGGGGACCAGG-TCGATCCTCGGCTTGCGCATTATGCCTCT
1 CAGTGGGATCAG-CAGCACGCAG-GGGGGACCGGGCT-GATCCTCGGCTTGCGCATTCTGCCTCT
* * * ** ** * *
12915544 TCGGTCGACTCAGTGCACGCACGCTTGTTTCGTGGGTTAACTTATGCATACGGAGTTCATTCCCA
63 CCGGTCGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCA
* * * *
12915609 -GTCTAAG--ATCGGACCAGACAGAGGGTTGCGG
127 TGCCTAAGCCA-CAG-CCAGACCGAGGGTTGTGG
* * * * ** *
12915640 TAG-GCAGGATC-GACAGTACGCAGAGGGGACCGGGCCCGATCC-CCACTTGCGCATTCTGTCTC
1 CAGTG--GGATCAG-CAGCACGCAGGGGGGACCGGG-CTGATCCTCGGCTTGCGCATTCTGCCTC
* ** * * * * * *
12915702 TCTGGTCGACTGAGCACCCGCACGCTCGTTTCGTAGTTTAGCTTAGGCATACGAAGTTCATTCCA
62 TCCGGTCGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
12915767 CGTTTAAGCA
Statistics
Matches: 369, Mismatches: 59, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.01
158 92 0.25
159 248 0.67
160 25 0.07
161 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CAGTGGGATCAGCAGCACGCAGGGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCG
GTCGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCC
TAAGCCACAGCCAGACCGAGGGTTGTGG
Found at i:12915800 original size:26 final size:26
Alignment explanation
Indices: 12915748--12915800 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12915738 TTTAGCTTAG
*
12915748 GCATACGAAGTTCATTCCACGTTTAA
1 GCATACGAAGTTCATTCCACGTCTAA
*
12915774 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGAAGTTCATTCCAC-GTCTAA
12915800 G
1 G
12915801 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCACGTCTAA
Found at i:12916511 original size:26 final size:26
Alignment explanation
Indices: 12916472--12916524 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12916462 GTTGACTTAG
*
12916472 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
* *
12916498 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
12916524 G
1 G
12916525 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAGTCTAA
Found at i:12916861 original size:159 final size:158
Alignment explanation
Indices: 12916498--12916990 Score: 368
Period size: 158 Copynumber: 3.1 Consensus size: 158
12916488 CCCAGTCTAA
* ** * * * * ** *
12916498 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCTGTAGGATTGGC
1 GCATACAG-AGTTCATTCCCAGTCTAACATTAGACCGAACCGAGGGTTACGGCAGCAGGACCGAC
* ** * * * * * * **
12916562 AACACGC-AGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTG
65 AGCACGCAAG-GGGGACCGGATCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGACTGAGCC
* * * *
12916626 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCCGCATGCTCGTTTCGTGGGTTGACTTAG
** * *** * * ** * * *
12916656 GCATAGGGAGTTCATT-CCATGTGTAAGCCCCAG-CTGGACCGAGGGTTGTGGTAGCGGGGCC-A
1 GCATACAGAGTTCATTCCCA-GTCTAA-CATTAGACCGAACCGAGGGTTACGGCAGCAGGACCGA
* * * ** * * * *
12916718 GCAGCATGCAGAGGGGGACCGG-GCTGGTCCGTGACTTGTGCATTATGCCTCTTCGGCCGGCTTA
64 -CAGCACGCA-AGGGGGACCGGATC-GATCCCCGACTTGCGCATTATGCCTCTCCGGCCGACTGA
* *
12916782 GCCCCCGCATGCTTGTTTCGTGGGTTGACTTAT
126 GCCCCCGCATGCTCGTTTCGTGGGTTGACTTAG
*
12916815 GCATACAGAGTTCATTCCCAGTCTAACATTAGACCGAACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAACATTAGACCGAACCGAGGGTTACGGCAGCAGGACCGACA
* * * *
12916880 GCACGTAAGGGGGATCGGATCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCC
66 GCACGCAAGGGGGACCGGATCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGACTGAGCCCC
* *
12916945 CGTATGCTCGTTTCGTGGGTTGGCTTAG
131 CGCATGCTCGTTTCGTGGGTTGACTTAG
*
12916973 GCATACGGAGTTCATTCC
1 GCATACAGAGTTCATTCC
12916991 ATGGCTAAGC
Statistics
Matches: 257, Mismatches: 67, Indels: 22
0.74 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 133 0.52
159 115 0.45
160 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAACATTAGACCGAACCGAGGGTTACGGCAGCAGGACCGACA
GCACGCAAGGGGGACCGGATCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGACTGAGCCCC
CGCATGCTCGTTTCGTGGGTTGACTTAG
Found at i:12917051 original size:52 final size:51
Alignment explanation
Indices: 12916970--12917075 Score: 151
Period size: 52 Copynumber: 2.0 Consensus size: 51
12916960 TGGGTTGGCT
*
12916970 TAGGCATACGGAGTTCATTCCATGGCTAAGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCAT-GCTAAGCATACAGAGTTCATTCCCAGTC
**
12917022 TAGGCATACGGAGTTCATCCCCAAT-CTAAGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCAT-CCC-ATGCTAAGCATACAGAGTTCATTCCCAGTC
12917074 TA
1 TA
12917076 AGATCGGATC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
52 45 0.92
53 2 0.04
54 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (51 bp):
TAGGCATACGGAGTTCATCCCATGCTAAGCATACAGAGTTCATTCCCAGTC
Found at i:12917070 original size:26 final size:26
Alignment explanation
Indices: 12916973--12917077 Score: 124
Period size: 26 Copynumber: 4.0 Consensus size: 26
12916963 GTTGGCTTAG
12916973 GCATACGGAGTTCATT-CC-ATGGCTAA
1 GCATACGGAGTTCATTCCCAAT--CTAA
* * *
12916999 GCATACAGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATTCCCAATCTAA
*
12917025 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12917051 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12917077 G
1 G
12917078 ATCGGATCGG
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 64 0.96
27 2 0.03
28 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12917339 original size:158 final size:157
Alignment explanation
Indices: 12917051--12917552 Score: 535
Period size: 158 Copynumber: 3.2 Consensus size: 157
12917041 CCCAATCTAA
* * * * *
12917051 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGTAAGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * ** * *
12917115 AGCACATAGGGGGGACCGGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGC
65 AGCACACAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTC-GCTGAGCGC
* *
12917180 CCGCACACCCATTTCGTGGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
12917209 GCATAGGGAGTTCATTCCATGTCTAAGCCCAG-TCGGACCAAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* *
12917273 GCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCTGCTCAGCGC
66 GCACACAG-GGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTC-GCTGAGCGC
* * *
12917338 CCGCACTCTCGTTTCGTGGGTTGACTTAT
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * * *
12917367 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
12917431 AGCACGCAGGGGGGGA-TCGGGCCAATCCCCGACTTGCGCATTCTGTCTCTTCGATCGACTGAGC
65 AGCACACA-GGGGGGACT-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCG-CTGAGC
* * * * *
12917495 ACCCACACGCTTGTTTCGTGGGTTGGATTAG
127 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
12917526 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12917553 CATACGGAGT
Statistics
Matches: 283, Mismatches: 53, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
157 36 0.13
158 123 0.43
159 122 0.43
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACACAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGCTGAGCGCCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:12917482 original size:159 final size:157
Alignment explanation
Indices: 12917051--12917552 Score: 528
Period size: 159 Copynumber: 3.2 Consensus size: 157
12917041 CCCAATCTAA
* * * * *
12917051 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGTAAGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * *
12917115 AGCACATA-GGGGGGACCGGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCG
65 AGCACACAGGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTC-GCTGAGCG
* * *
12917179 CCCGCACACCCATTTCGTGGGTTGGCTTAG
128 CCCGCACACTCGTTTCGTGGGTTGACTTAG
* ** * * * *
12917209 GCATAGGGAGTTCATTCCATGTCTAAGCCCAG-TCGGACCAAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
12917273 GCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCTGCTCAGCGC
66 GCACACAGGGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTC-GCTGAGCGC
* *
12917338 CCGCACTCTCGTTTCGTGGGTTGACTTAT
129 CCGCACACTCGTTTCGTGGGTTGACTTAG
* * * * *
12917367 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
12917431 AGCACGCAGGGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTGTCTCTTCGATCGACTGAGCA
65 AGCACACAGGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCG-CTGAGCG
* * *
12917496 CCCACACGCTTGTTTCGTGGGTTGGA-TTAG
128 CCCGCACACTCGTTTCGTGGGTT-GACTTAG
12917526 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12917553 CATACGGAGT
Statistics
Matches: 283, Mismatches: 52, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
157 36 0.13
158 121 0.43
159 122 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACACAGGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGCTGAGCGCCC
GCACACTCGTTTCGTGGGTTGACTTAG
Found at i:12917515 original size:553 final size:553
Alignment explanation
Indices: 12916469--12917578 Score: 1548
Period size: 553 Copynumber: 2.0 Consensus size: 553
12916459 TGGGTTGACT
*
12916469 TAGGCATACGGACTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTG
1 TAGGCATACGGACTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTG
* * * *
12916534 GACCGAGGGTTACGGCTGTAGGATTGGCAACACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCG
66 GACCGAGGGTTACGGCAGTAAGATTGACAACACACAGAGGGGACCGGGCCGATCCTCGGCTTGCG
* * *
12916599 CATTCTGCCTCTTCGACCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGG
131 CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGG
* * * * **
12916664 AGTTCATTCCATGTGTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCGGGGCCAGCAGCATGCAG
196 AGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCGGGACCAGCAGCACACAG
* * ** * *
12916729 AGGGGGACCGGGCTGGTCCGTGACTTGTGCATTATGCCTCTTCGGCCGGCTTAGCCCCCGCATGC
261 AGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGCCCCCGCATGC
* *
12916794 TTGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAACATTAGACCGAACCGAGG
326 TCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAACATCAGACCGAACCGAGG
* * * *
12916859 GTTACGGCAGCAGGATCGACAGCACGTAAGGGGGATCGGATCGATCCCCGGCTTGCGCATTATGC
391 GTTACGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGACCAATCCCCGACTTGCGCATTATGC
* * ** * *
12916924 CTCTCCGGCCGACTGAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
456 CTCTCCGACCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATT
12916989 CCATGGCTAAGCATACAGAGTTCATTCCCAGTC
521 CCATGGCTAAGCATACAGAGTTCATTCCCAGTC
* * *
12917022 TAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TC
1 TAGGCATACGGACTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACT-
** * * * * *
12917086 GGACCGAGGGTTGTGGCAGTAAGATTGACAGCACATAGGGGGGACCGGGCTGATCCTTGGCTTGC
65 GGACCGAGGGTTACGGCAGTAAGATTGACAACACACAGAGGGGACCGGGCCGATCCTCGGCTTGC
*
12917151 GCATTCTGCCTCTCC-AGTCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAG
130 GCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAG
*
12917215 GGAGTTCATTCCATGTCTAAG-CCCAG-TCGGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACA
194 GGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCAAGGGTTGTGGCAGCGGGACCAGCAGCACA
* * * * *
12917278 CAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCTGCTCAGCGCCCGCA
258 CAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGCCCCCGCA
* *
12917343 CT-CTCGTTTCGTGGGTTGACTTATGCATAC-GAAGTTCATTCCTAGTCTAAGATCAGACCGAAC
323 -TGCTCGTTTCGTGGGTTGACTTATGCATACAG-AGTTCATTCCCAGTCTAACATCAGACCGAAC
* ** * * *
12917406 TGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGGATCGGGCCAATCCCCGACTTGCGCA
386 CGAGGGTTACGGCAGCAGGATCGACAGCACGCA-AGGGGGATCGGACCAATCCCCGACTTGCGCA
* * * * *
12917471 TTCTGTCTCTTCGATCGACTGAGCACCCACACGCTTGTTTCGTGGGTTGGATTAGGCATACGGAG
450 TTATGCCTCTCCGACCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGGATTAGGCATACGGAG
* *
12917536 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
515 TTCATTCCATGGCTAAGCATACAGAGTTCATTCCCAGTC
12917575 TAGG
1 TAGG
12917579 ATTTTGAGCC
Statistics
Matches: 487, Mismatches: 64, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
551 2 0.00
552 173 0.36
553 312 0.64
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (553 bp):
TAGGCATACGGACTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTG
GACCGAGGGTTACGGCAGTAAGATTGACAACACACAGAGGGGACCGGGCCGATCCTCGGCTTGCG
CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCGGGACCAGCAGCACACAG
AGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGCCCCCGCATGC
TCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAACATCAGACCGAACCGAGG
GTTACGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGACCAATCCCCGACTTGCGCATTATGC
CTCTCCGACCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATT
CCATGGCTAAGCATACAGAGTTCATTCCCAGTC
Found at i:12918285 original size:26 final size:26
Alignment explanation
Indices: 12918248--12918300 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12918238 GTTGACTTAG
*
12918248 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12918274 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12918300 G
1 G
12918301 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12918682 original size:158 final size:157
Alignment explanation
Indices: 12918274--12918763 Score: 459
Period size: 158 Copynumber: 3.1 Consensus size: 157
12918264 CCCAGTCTAA
* * * * *
12918274 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCT-GCAGGATCGAC
1 GCATACGGAGTTCATTTCCAGTCTAACATCGGACCGGACCGAGGGTTGC-GATAGCAGGATCGAC
* * * * * * * *
12918338 AGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCGTATTCTACCTCTCCGACCTGCTGAGCAC
65 AGCACGCAGGGGGGACGGGA-CGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCAC
*
12918403 CCGCATGCCCATTTCGTGGGTTGGCTTAT
129 CCGCATGCTCATTTCGTGGGTTGGCTTAT
* * ** * * * * * * * *
12918432 GCATA-GGAGTTCA-TTCCATGTGTAAGC-CCTAATCGAACTGAGGGTTGTGGTAGCGGGACCGG
1 GCATACGGAGTTCATTTCCA-GTCTAA-CATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGA
* * ** * ** *
12918494 CAGCACGTAGAGAGGGACCCGACTGGTCCCTAACTTGCGCATTATGCCTCTTCGGCCGGCTCAGC
64 CAGCACGCAG-GGGGGACGGGAC-GATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGC
* * * *
12918559 ACCCGTACGCTCATTTCATGGGTTGACTTAT
127 ACCCGCATGCTCATTTCGTGGGTTGGCTTAT
*
12918590 GCATACAGAGTTCATTTCCAGTCTAACATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAACATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
* * * **
12918655 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTT-CTGCATTGTGCCTCTTCGGTCGATTGAGCAC
66 GCACGCAGGGGGGA-CGGGACGATCCCTGGCTTGC-GCATTATGCCTCTTCGGCCGGCTGAGCAC
* *
12918719 CCGCATGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCATGCTCATTTCGTGGGTTGGCTTAT
12918748 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
12918764 CCATGGCTAA
Statistics
Matches: 254, Mismatches: 68, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
156 6 0.02
157 43 0.17
158 152 0.60
159 48 0.19
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTTCCAGTCTAACATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
GCACGCAGGGGGGACGGGACGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCACCC
GCATGCTCATTTCGTGGGTTGGCTTAT
Found at i:12918803 original size:26 final size:26
Alignment explanation
Indices: 12918740--12918791 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12918730 TTTCGTGGGT
*
12918740 TGGCTTAGGCATACGGAGTTCATTCCA
1 TGGC-TAGGCATACAGAGTTCATTCCA
*
12918767 TGGCTAAGCATACAGAGTTCATTCC
1 TGGCTAGGCATACAGAGTTCATTCC
12918792 CAGTCTAGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (26 bp):
TGGCTAGGCATACAGAGTTCATTCCA
Found at i:12918860 original size:26 final size:26
Alignment explanation
Indices: 12918828--12918878 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12918818 AGTTCAAAAT
* *
12918828 CCCAGTCTAAGCATACGGAGTTCATC
1 CCCAGTCTAAGCAAACAGAGTTCATC
12918854 CCCAGTCTAAGCAAACAGAGTTCAT
1 CCCAGTCTAAGCAAACAGAGTTCAT
12918879 TCAAGTCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (26 bp):
CCCAGTCTAAGCAAACAGAGTTCATC
Found at i:12919448 original size:9 final size:10
Alignment explanation
Indices: 12919436--12919489 Score: 53
Period size: 9 Copynumber: 5.5 Consensus size: 10
12919426 TTTTTCCTTT
12919436 TGTATT-TTA
1 TGTATTATTA
12919445 TGTATT-TTA
1 TGTATTATTA
12919454 T-TATTTATTA
1 TGTA-TTATTA
12919464 T-TATTATTA
1 TGTATTATTA
12919473 TGTATTAATATA
1 TGTATT-AT-TA
12919485 TGTAT
1 TGTAT
12919490 ATCTTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.05
9 19 0.47
10 10 0.25
11 2 0.05
12 7 0.17
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (10 bp):
TGTATTATTA
Found at i:12919460 original size:16 final size:16
Alignment explanation
Indices: 12919441--12919576 Score: 60
Period size: 16 Copynumber: 8.6 Consensus size: 16
12919431 CCTTTTGTAT
12919441 TTTATGTATT-TTATTA
1 TTTAT-TATTATTATTA
12919457 TTTATTATTATTATTA
1 TTTATTATTATTATTA
*
12919473 TGTATTAATATATGTA-TA
1 TTTATT-AT-TAT-TATTA
*
12919491 TCT-TTATTTATTTATT-
1 TTTATTA-TTA-TTATTA
* * *
12919507 TGTT-TTTTTGTTAATA
1 T-TTATTATTATTATTA
12919523 TTTA-TATGTATT-TTA
1 TTTATTAT-TATTATTA
12919538 TTTATATAGTTA-TATT-
1 TTTAT-TA-TTATTATTA
12919554 TTTATTATTA-TATTA
1 TTTATTATTATTATTA
12919569 -TTATTATT
1 TTTATTATT
12919577 TTTTTTTTGT
Statistics
Matches: 95, Mismatches: 9, Indels: 34
0.69 0.07 0.25
Matches are distributed among these distances:
14 15 0.16
15 20 0.21
16 34 0.36
17 16 0.17
18 8 0.08
19 2 0.02
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:12920193 original size:20 final size:20
Alignment explanation
Indices: 12920170--12920207 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
12920160 TCCGGTGAAC
*
12920170 TTTTCCAGATTCCGACGATA
1 TTTTCCAGAATCCGACGATA
*
12920190 TTTTCTAGAATCCGACGA
1 TTTTCCAGAATCCGACGA
12920208 AAATTTACCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (20 bp):
TTTTCCAGAATCCGACGATA
Found at i:12920555 original size:8 final size:8
Alignment explanation
Indices: 12920542--12920593 Score: 65
Period size: 8 Copynumber: 6.9 Consensus size: 8
12920532 CCAGGTTTTT
12920542 TTTTTTAA
1 TTTTTTAA
12920550 TTTTTTAA
1 TTTTTTAA
12920558 TTTTTTAA
1 TTTTTTAA
*
12920566 -ATTTTAA
1 TTTTTTAA
*
12920573 TTTGTT--
1 TTTTTTAA
12920579 TTTTTTAA
1 TTTTTTAA
12920587 TTTTTTA
1 TTTTTTA
12920594 TTTATTAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
6 5 0.14
7 6 0.16
8 26 0.70
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (8 bp):
TTTTTTAA
Found at i:12920670 original size:28 final size:27
Alignment explanation
Indices: 12920619--12920682 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
12920609 TTATGTAATA
12920619 TTTTTTTTATCTTTATTTTATTTTTAT
1 TTTTTTTTATCTTTATTTTATTTTTAT
12920646 TTTTGTTTTA-CTTT-TCTTTATTTTTTAT
1 TTTT-TTTTATCTTTAT-TTTA-TTTTTAT
12920674 TTTTATTTT
1 TTTT-TTTT
12920683 TTTTTGTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
26 1 0.03
27 12 0.36
28 20 0.61
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (27 bp):
TTTTTTTTATCTTTATTTTATTTTTAT
Found at i:12920671 original size:11 final size:10
Alignment explanation
Indices: 12920630--12920687 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 10
12920620 TTTTTTTATC
12920630 TTTATTTTATT
1 TTTATTTT-TT
12920641 TTTATTTTTGT
1 TTTATTTTT-T
12920652 TTTACTTTTCTT
1 TTTA-TTTT-TT
12920664 TATT-TTTTATT
1 T-TTATTTT-TT
12920675 TTTATTTTTT
1 TTTATTTTTT
12920685 TTT
1 TTT
12920688 GTTATTCTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
10 8 0.20
11 24 0.59
12 6 0.15
13 3 0.07
ACGTcount: A:0.12, C:0.03, G:0.02, T:0.83
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:12920681 original size:40 final size:39
Alignment explanation
Indices: 12920617--12920705 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 39
12920607 GTTTATGTAA
* * * *
12920617 TATTTTTTTTA-TCTTTATTTTATTTTTATTT-TTGTTT
1 TATTTTCTTTATTTTTTATTTTATTTTTATTTGTTATTC
*
12920654 TACTTTTCTTTATTTTTTATTTTTATTTTTTTTTGTTATTC
1 TA-TTTTCTTTATTTTTTA-TTTTATTTTTATTTGTTATTC
12920695 TATTTTCTTTA
1 TATTTTCTTTA
12920706 AATAAAAATC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
37 2 0.05
38 8 0.19
39 5 0.12
40 22 0.51
41 6 0.14
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (39 bp):
TATTTTCTTTATTTTTTATTTTATTTTTATTTGTTATTC
Found at i:12920686 original size:17 final size:17
Alignment explanation
Indices: 12920622--12920687 Score: 78
Period size: 17 Copynumber: 3.9 Consensus size: 17
12920612 TGTAATATTT
* *
12920622 TTTTTATCTTTATTTTA
1 TTTTTATTTTTTTTTTA
*
12920639 TTTTTATTTTTGTTTTA
1 TTTTTATTTTTTTTTTA
* * *
12920656 CTTTTCTTTATTTTTTA
1 TTTTTATTTTTTTTTTA
12920673 TTTTTATTTTTTTTT
1 TTTTTATTTTTTTTT
12920688 GTTATTCTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.82
Consensus pattern (17 bp):
TTTTTATTTTTTTTTTA
Found at i:12920702 original size:7 final size:6
Alignment explanation
Indices: 12920622--12920693 Score: 60
Period size: 6 Copynumber: 12.3 Consensus size: 6
12920612 TGTAATATTT
* * * * *
12920622 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTC TTTAT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
12920667 TTTTTA TTTTTA TTTTTT TTTGTTA TT
1 TTTTTA TTTTTA TTTTTA TTT-TTA TT
12920694 CTATTTTCTT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
5 12 0.23
6 36 0.69
7 4 0.08
ACGTcount: A:0.12, C:0.04, G:0.03, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:12920849 original size:57 final size:56
Alignment explanation
Indices: 12920732--12920881 Score: 243
Period size: 57 Copynumber: 2.7 Consensus size: 56
12920722 TTCCAAAAGG
12920732 AAATATTTTTAGGGAAAAGTTGAAAGTA-CAATTTT-CTTAAAAATAAATTTTCAAA
1 AAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
12920787 AAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTCTAAA
1 AAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAA
12920844 AAATATTTTTGTGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCC
12920882 CTACACGAGA
Statistics
Matches: 90, Mismatches: 0, Indels: 8
0.92 0.00 0.08
Matches are distributed among these distances:
54 3 0.03
55 24 0.27
56 11 0.12
57 50 0.56
58 2 0.02
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (56 bp):
AAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
Found at i:12926167 original size:43 final size:41
Alignment explanation
Indices: 12926008--12926178 Score: 274
Period size: 41 Copynumber: 4.1 Consensus size: 41
12925998 TGATTGTCAG
12926008 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
12926049 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCC-CTGTTTAGA
1 GGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAGA
*
12926090 GGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
*
12926131 GGAGCAATTTATGTTTCTCAAAGTCGTTGG-GCCTCTGTTTAGA
1 GGAGCAATTTA-CTTTC-CAAAGTCG-TGGTGCCTCTGTTTAGA
12926174 GGAGC
1 GGAGC
12926179 TTTGGTAAAA
Statistics
Matches: 123, Mismatches: 2, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
40 14 0.11
41 62 0.50
42 18 0.15
43 26 0.21
44 3 0.02
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (41 bp):
GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
Found at i:12926191 original size:1 final size:1
Alignment explanation
Indices: 12926185--12926227 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
12926175 GAGCTTTGGT
* * * *
12926185 AAAAAAAAAAACAAAAAAACAAAAAACAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
12926228 TGACAATGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:12926202 original size:8 final size:8
Alignment explanation
Indices: 12926185--12926227 Score: 61
Period size: 8 Copynumber: 5.4 Consensus size: 8
12926175 GAGCTTTGGT
12926185 AAAA-AAA
1 AAAACAAA
12926192 AAAACAAA
1 AAAACAAA
12926200 AAAACAAA
1 AAAACAAA
*
12926208 AAACAAAAA
1 AAA-ACAAA
12926217 AAAACAAA
1 AAAACAAA
12926225 AAA
1 AAA
12926228 TGACAATGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
7 4 0.12
8 21 0.66
9 7 0.22
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAACAAA
Found at i:12926208 original size:15 final size:14
Alignment explanation
Indices: 12926185--12926225 Score: 64
Period size: 15 Copynumber: 2.8 Consensus size: 14
12926175 GAGCTTTGGT
12926185 AAAAAAAAAAACAA
1 AAAAAAAAAAACAA
12926199 AAAAACAAAAAACAA
1 AAAAA-AAAAAACAA
12926214 AAAAAAACAAAA
1 AAAAAAA-AAAA
12926226 AATGACAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.28
15 18 0.72
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAACAA
Found at i:12926210 original size:17 final size:17
Alignment explanation
Indices: 12926185--12926227 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
12926175 GAGCTTTGGT
12926185 AAAAA-AAAAAAC--AA
1 AAAAACAAAAAACAAAA
12926199 AAAAACAAAAAACAAAA
1 AAAAACAAAAAACAAAA
12926216 AAAAACAAAAAA
1 AAAAACAAAAAA
12926228 TGACAATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.19
15 7 0.27
17 14 0.54
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAAACAAAA
Found at i:12926424 original size:9 final size:10
Alignment explanation
Indices: 12926412--12926465 Score: 53
Period size: 9 Copynumber: 5.5 Consensus size: 10
12926402 TTTTTCCTTT
12926412 TGTATT-TTA
1 TGTATTATTA
12926421 TGTATT-TTA
1 TGTATTATTA
12926430 T-TATTTATTA
1 TGTA-TTATTA
12926440 T-TATTATTA
1 TGTATTATTA
12926449 TGTATTAATATA
1 TGTATT-AT-TA
12926461 TGTAT
1 TGTAT
12926466 ATCTTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.05
9 19 0.47
10 10 0.25
11 2 0.05
12 7 0.17
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (10 bp):
TGTATTATTA
Found at i:12926494 original size:56 final size:56
Alignment explanation
Indices: 12926417--12926571 Score: 149
Period size: 56 Copynumber: 2.8 Consensus size: 56
12926407 CCTTTTGTAT
* * **
12926417 TTTATGTATTT-TATTATTTATTATTATTATTATGTAT-TAATATATGTATATCTTTA
1 TTTATTTATTTAT-TTATTTATTATTATTATT-TATATGTAATATATGTATATAGTTA
* * * * *
12926473 TTTATTTATTTATTTATTTATTGTTAATATTTATATGTATTTTATTTATATAGTTA
1 TTTATTTATTTATTTATTTATTATTATTATTTATATGTAATATATGTATATAGTTA
* *
12926529 TATATTTA-TTA-TTATATTATTATTATTATTT-TTTGTAATATAT
1 TTTATTTATTTATTTAT-TTATTATTATTATTTATATGTAATATAT
12926572 TTTGGGTTTA
Statistics
Matches: 81, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
54 13 0.16
55 20 0.25
56 47 0.58
57 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.65
Consensus pattern (56 bp):
TTTATTTATTTATTTATTTATTATTATTATTTATATGTAATATATGTATATAGTTA
Found at i:12926538 original size:4 final size:4
Alignment explanation
Indices: 12926469--12926494 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
12926459 TATGTATATC
12926469 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
12926495 GTTAATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:12927455 original size:11 final size:10
Alignment explanation
Indices: 12927439--12927472 Score: 52
Period size: 9 Copynumber: 3.4 Consensus size: 10
12927429 CGCTCCAGTT
12927439 TTTTTTTAAAA
1 TTTTTTT-AAA
12927450 TTTTTTTAAA
1 TTTTTTTAAA
12927460 -TTTTTTAAA
1 TTTTTTTAAA
12927469 TTTT
1 TTTT
12927473 CATTTATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.41
10 6 0.27
11 7 0.32
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:12927542 original size:11 final size:10
Alignment explanation
Indices: 12927528--12927575 Score: 51
Period size: 11 Copynumber: 4.5 Consensus size: 10
12927518 TTTAATATTC
12927528 TTTTATCTTTA
1 TTTT-TCTTTA
*
12927539 TTTTATTTTTA
1 TTTT-TCTTTA
*
12927550 TTTTTGTTTTA
1 TTTTT-CTTTA
12927561 TTTTTCTTTA
1 TTTTTCTTTA
12927571 TTTTT
1 TTTTT
12927576 TATTTTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
10 10 0.29
11 24 0.71
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.81
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:12927548 original size:17 final size:17
Alignment explanation
Indices: 12927528--12927596 Score: 70
Period size: 17 Copynumber: 4.1 Consensus size: 17
12927518 TTTAATATTC
12927528 TTTTATCTTTATTTTAT
1 TTTTATCTTTATTTTAT
* *
12927545 TTTTATTTTTGTTTTA-
1 TTTTATCTTTATTTTAT
12927561 TTTT-TCTTTATTTTTTAT
1 TTTTATCTTTA--TTTTAT
* *
12927579 TTTTATTTTTTTTTTAT
1 TTTTATCTTTATTTTAT
12927596 T
1 T
12927597 ATTCTATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
15 4 0.10
16 4 0.10
17 26 0.62
18 4 0.10
19 4 0.10
ACGTcount: A:0.13, C:0.03, G:0.01, T:0.83
Consensus pattern (17 bp):
TTTTATCTTTATTTTAT
Found at i:12927593 original size:11 final size:11
Alignment explanation
Indices: 12927535--12927596 Score: 72
Period size: 11 Copynumber: 5.5 Consensus size: 11
12927525 TTCTTTTATC
*
12927535 TTTATTTTATT
1 TTTATTTTTTT
*
12927546 TTTATTTTTGT
1 TTTATTTTTTT
12927557 TTTATTTTTCTT
1 TTTATTTTT-TT
*
12927569 TATT-TTTTATT
1 T-TTATTTTTTT
12927580 TTTATTTTTTT
1 TTTATTTTTTT
12927591 TTTATT
1 TTTATT
12927597 ATTCTATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
10 2 0.05
11 33 0.77
12 6 0.14
13 2 0.05
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.84
Consensus pattern (11 bp):
TTTATTTTTTT
Found at i:12927606 original size:17 final size:17
Alignment explanation
Indices: 12927539--12927611 Score: 69
Period size: 17 Copynumber: 4.3 Consensus size: 17
12927529 TTTATCTTTA
*
12927539 TTTTATTTTTAT-TTTT
1 TTTTATTTTTCTATTTT
12927555 GTTTTATTTTTCT-TTATT
1 -TTTTATTTTTCTATT-TT
* *
12927573 TTTTATTTTTATTTTTT
1 TTTTATTTTTCTATTTT
*
12927590 TTTTATTATTCTATTTT
1 TTTTATTTTTCTATTTT
*
12927607 CTTTA
1 TTTTA
12927612 AATAAAAATC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
17 44 0.92
18 4 0.08
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.81
Consensus pattern (17 bp):
TTTTATTTTTCTATTTT
Found at i:12927608 original size:7 final size:6
Alignment explanation
Indices: 12927528--12927606 Score: 76
Period size: 6 Copynumber: 13.5 Consensus size: 6
12927518 TTTAATATTC
* * * *
12927528 TTTTAT CTTTA- TTTTAT TTTTAT TTTT-G TTTTAT TTTTCT TTAT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
12927573 TTTTAT TTTTAT TTTT-T TTTTAT TATTCTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT T-TT-TAT TTT
12927607 CTTTAAATAA
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
5 17 0.28
6 35 0.58
7 4 0.07
8 4 0.07
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:12927836 original size:57 final size:57
Alignment explanation
Indices: 12927634--12928199 Score: 800
Period size: 57 Copynumber: 9.7 Consensus size: 57
12927624 AATTTCCAAA
12927634 AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-C
1 AAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
*** *
12927690 AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTCC
*
12927749 AAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTGCTTAAAAATAAATTTCC
1 -AAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
* *
12927807 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
** *
12927864 AAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAAAATCAAAATTTCA
1 AAAAAATA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAAT--AAATTTCC
*
12927926 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTGCTTAAAAATAAATTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
* *
12927983 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
* *
12928040 AAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAAATCAAAATTTCA
1 AAAAAATA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAAT--AAATTTCC
12928102 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
*
12928159 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
12928200 CTACACGAGA
Statistics
Matches: 459, Mismatches: 30, Indels: 41
0.87 0.06 0.08
Matches are distributed among these distances:
56 45 0.10
57 174 0.38
58 14 0.03
59 79 0.17
60 121 0.26
62 24 0.05
63 2 0.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.35
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
Found at i:12927849 original size:117 final size:116
Alignment explanation
Indices: 12927614--12928199 Score: 837
Period size: 119 Copynumber: 5.0 Consensus size: 116
12927604 TTTCTTTAAA
12927614 TAAAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 TAAAAATCAAAATTTCC--AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAA
***
12927679 AAATAAATTT-CAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
63 AAATAAATTTCCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
12927732 TGAAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTGCTTAAAA
1 TAAAAATCAAAATTTCCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
*
12927797 ATAAATTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
65 ATAAATTTCCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* ** **
12927849 TAAAAAT--AAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTGAA
1 TAAAAATCAAAATTTCCAAAAAAA-TATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTT-AA
* *
12927912 AAATCAAAATTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTGCT
63 AAAT--AAATTTCCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
12927968 TAAAAAT--AAATTTCC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 TAAAAATCAAAATTTCCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
12928030 ATAAATTTTCAAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTT
65 ATAAATTTCCAAAAAATA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
12928084 TGAAAAATCAAAATTT-CAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 T-AAAAATCAAAATTTCCAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAA
*
12928148 AATAAATTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
64 AATAAATTTCCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
12928200 CTACACGAGA
Statistics
Matches: 425, Mismatches: 27, Indels: 33
0.88 0.06 0.07
Matches are distributed among these distances:
113 1 0.00
114 12 0.03
115 15 0.04
116 125 0.29
117 119 0.28
118 25 0.06
119 127 0.30
120 1 0.00
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (116 bp):
TAAAAATCAAAATTTCCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:12927930 original size:176 final size:176
Alignment explanation
Indices: 12927634--12928199 Score: 1043
Period size: 176 Copynumber: 3.2 Consensus size: 176
12927624 AATTTCCAAA
*
12927634 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC--AAAAAG
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAG
*
12927696 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG-AAAATCAAAATTTCCAAAAAAATATT
66 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAAATCAAAATTT-CAAAAAAATATT
12927760 TTT-AGGGAAAAGTTGAAAGTATCAATTTTGCTTAAAAATAAATTTCC
130 TTTGA-GGAAAAGTTGAAAGTATCAATTTTGCTTAAAAATAAATTTCC
12927807 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAG
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAG
*
12927872 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAAAATCAAAATTTCAAAAAAATATTT
66 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAAATCAAAATTTCAAAAAAATATTT
12927937 TTGAGGAAAAGTTGAAAGTATCAATTTTGCTTAAAAATAAATTTCC
131 TTGAGGAAAAGTTGAAAGTATCAATTTTGCTTAAAAATAAATTTCC
12927983 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAG
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAG
12928048 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAAATCAAAATTTCAAAAAAATATTT
66 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAAATCAAAATTTCAAAAAAATATTT
*
12928113 TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
131 TTGAGGAAAAGTTGAAAGTATCAATTTTGCTTAAAAATAAATTTCC
12928159 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
12928200 CTACACGAGA
Statistics
Matches: 383, Mismatches: 5, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
173 51 0.13
174 4 0.01
176 314 0.82
177 14 0.04
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.35
Consensus pattern (176 bp):
AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAG
GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAAATCAAAATTTCAAAAAAATATTT
TTGAGGAAAAGTTGAAAGTATCAATTTTGCTTAAAAATAAATTTCC
Found at i:12929409 original size:26 final size:26
Alignment explanation
Indices: 12929379--12929428 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12929369 TGGGTTGACT
12929379 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
12929405 TAGGCATATGGAGTTCATTCCCAG
1 TAGGCATACGGAGTTCATCCCCAG
12929429 CCTAAGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:12929930 original size:26 final size:26
Alignment explanation
Indices: 12929894--12929946 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12929884 GTTGGCTTAG
*
12929894 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12929920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12929946 G
1 G
12929947 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12930071 original size:196 final size:196
Alignment explanation
Indices: 12929724--12930117 Score: 583
Period size: 196 Copynumber: 2.0 Consensus size: 196
12929714 GTTGACTTAG
*
12929724 GCATACGGCATTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCTACAGCATGACCAGCA
1 GCATACGGCATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCTACAGCATGACCAGCA
* *
12929789 GCAGGATCGACAGCACGTAAGAGGGACCGAGCTGATCCCCGACTTACGCATTCTACCTCTCCGAC
66 GCAGGATCGACAGCACGCAAGAGGGACCGAGCTGATCCCCGACTTACACATTCTACCTCTCCGAC
** * * * *
12929854 CAGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
131 CAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
12929919 A
196 A
* * *
12929920 GCATACGG-AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCTGCAGCATGACCAGC
1 GCATACGGCA-TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCTACAGCATGACCAGC
* * * * * *
12929984 AGCAGGATTGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTCCACATTCTGCCTCTCCGA
65 AGCAGGATCGACAGCACGCAAGAGGGACCGAGCTGATCCCCGACTTACACATTCTACCTCTCCGA
* * *
12930049 TCGGCTGAGCATCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
130 CCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
12930114 AA
195 AA
12930116 GC
1 GC
12930118 CCCAGCTGCA
Statistics
Matches: 176, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
195 1 0.01
196 175 0.99
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
GCATACGGCATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCTACAGCATGACCAGCA
GCAGGATCGACAGCACGCAAGAGGGACCGAGCTGATCCCCGACTTACACATTCTACCTCTCCGAC
CAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
A
Found at i:12930306 original size:171 final size:169
Alignment explanation
Indices: 12929920--12930307 Score: 385
Period size: 171 Copynumber: 2.3 Consensus size: 169
12929910 CCATGTCTAA
* *
12929920 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCTGCAGCATGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGATCGAGGGTTGCTGCAACAGGACCAGCA
* * * *
12929985 GCAGGATTGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTCCACATTCTGCCTCTCCGAT
65 GCAGGATTGACAGCACGCAGAGGGGACCAGGCTGATCCCCGACTTACACATTATGCCTCTCCGAT
* * *
12930050 CGGCTGAGCATCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGGCAGAGAATCCGCACGCTCGTTTCATGGGTTGACTTAG
* ** * * * *
12930090 GCATACGAAGTTCATT-CCATGTCTAAGCCCCAGCTGCACCGAGGGTTG-TGGCAACAGGACC-G
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAACCGGATCGAGGGTTGCT-GCAACAGGACCAG
* * * * * *
12930152 -A-TAGTGATATTGGCTGCACGCAGAAGGGGATCAGGCTGATCCTCGACTTACGCATTATGCCTC
63 CAGCAG-G--ATTGACAGCACGCAG-AGGGGACCAGGCTGATCCCCGACTTACACATTATGCCTC
* ** *
12930215 TCTGA-CTGGCAGA-AAGTTTGCACGCTCGTTTCGTGGGTTGACTTAG
124 TCCGATC-GGCAGAGAA-TCCGCACGCTCGTTTCATGGGTTGACTTAG
*
12930261 GCATACGGAGTTTATTCCCAGTCTAAGATCGAACCGGATCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGATCGAGGGTT
12930308 ACGGTAGCAG
Statistics
Matches: 173, Mismatches: 34, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
167 2 0.01
168 2 0.01
169 5 0.03
170 59 0.34
171 102 0.59
172 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (169 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGATCGAGGGTTGCTGCAACAGGACCAGCAG
CAGGATTGACAGCACGCAGAGGGGACCAGGCTGATCCCCGACTTACACATTATGCCTCTCCGATC
GGCAGAGAATCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:12930588 original size:159 final size:158
Alignment explanation
Indices: 12930234--12930763 Score: 417
Period size: 159 Copynumber: 3.3 Consensus size: 158
12930224 CAGAAAGTTT
* * *
12930234 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGAACCGGA
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGAACCGGA
* * * * * *
12930299 TCGAGGGTTACGGTAGCAGGATCGACAGCACATAAGGGGGACCGGGTCGATCCTCGGCTTGCGTA
66 CCGAGGGTTACGGCAGCAGGATCGACAGCACATAAGGGGCACCGGGTCGATCCCCGACTTGCGCA
* * * *
12930364 TTCTACCTCTTCGGCCGCCTGACCGCCC
131 TTATACCTCTTCGACCGCCTCAACGCCC
* * * * *
12930392 GCACGCCCGTTTCGA-GGGTTGGA-TTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCC
1 GCACGCTCGTTTC-ATGGGTT-GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCGAACC
* ** * ** *
12930454 TGACCGAGGGTTGTGGCAGCGGGATCGACAGCACATAGAGGGGCATTGGG-CATATCCCCGACTT
63 GGACCGAGGGTTACGGCAGCAGGATCGACAGCACATA-AGGGGCACCGGGTC-GATCCCCGACTT
* * * * *
12930518 GCGCATTATGCCTTTTCGATCGGCTCAATGCCC
126 GCGCATTATACCTCTTCGACCGCCTCAACGCCC
* * *
12930551 GCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGA-ACCGG
* ** * * ** * * * *
12930615 ACCGAAGGTTTTGGCAGTAGGATTGACAGCACGCAGGAGGGG-ATCGGGTCGATCCCTGGCTTGT
65 ACCGAGGGTTACGGCAGCAGGATCGACAGCA--CATAAGGGGCACCGGGTCGATCCCCGACTTGC
* * * * * * *
12930679 GCATTCTGCCTCTCCGGCCGACTGAGCGCCC
128 GCATTATACCTCTTCGACCGCCTCAACGCCC
* * * * * *
12930710 TCACGTTCATTTCGTGGGTTGGCCTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
12930764 CATACGGAGT
Statistics
Matches: 293, Mismatches: 66, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 85 0.29
159 194 0.66
160 9 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGAACCGGA
CCGAGGGTTACGGCAGCAGGATCGACAGCACATAAGGGGCACCGGGTCGATCCCCGACTTGCGCA
TTATACCTCTTCGACCGCCTCAACGCCC
Found at i:12930773 original size:26 final size:26
Alignment explanation
Indices: 12930737--12930789 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12930727 GTTGGCCTAG
12930737 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12930763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12930789 G
1 G
12930790 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12931507 original size:26 final size:26
Alignment explanation
Indices: 12931471--12931521 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12931461 TTGACTTAGG
*
12931471 CATACGGAGTTCATTCGTAGTCTAAA
1 CATACGGAGTTCATTCCTAGTCTAAA
12931497 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCTAGTCTAA
12931522 GATCGGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAA
Found at i:12931857 original size:159 final size:157
Alignment explanation
Indices: 12931497--12931995 Score: 456
Period size: 157 Copynumber: 3.2 Consensus size: 157
12931487 GTAGTCTAAA
* ** * *
12931497 CATACGGAGTTCATTCC-TAGTCTAAGATCGGACTAGACCGAGGGTTGCTGCAGTAGGATCGACA
1 CATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTG-TGTAGCAGGATCGACA
* * * * *
12931561 GCATGCAG-GGGGGACGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCTAG-CTGGCTGAGCGC
64 GCATGCAGAGGGGGACGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCTGGTC-GGCTAAGCGC
* * * * *
12931624 CTGCATGCTCATTTCATGGGTTGGCTTGGG
128 CCGTACGCTCGTTTCATGGGTTGGCTTAGG
* **** * * * *
12931654 CATAGGGAGTTCATTCCATGTCTTATCCCCAG-TCGAACCGAGGGTTGTGATAGCGGGACCGACA
1 CATACGGAGTTCATTCCATGTC-TAAGATCAGACCGGACCGAGGGTTGTG-TAGCAGGATCGACA
* ** * * *
12931718 GCATGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTATGTGTCTCCGGTCGGCTCAGCAC
64 GCATGCAGAGGGGGA-CGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCTGGTCGGCTAAGCGC
*
12931783 CCGTACGCTCGTTTCATGGGTTGACTTAGG
128 CCGTACGCTCGTTTCATGGGTTGGCTTAGG
* * *
12931813 CATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTG-TGTAGCAGGATCGACA
* * * * ** *
12931877 GCACGC--AGGGGGACCGGG-TCGGTCCCCGGCTTGTGCATTTTGCCTCTCTGGTCGATTAAACG
64 GCATGCAGAGGGGGA-CGGGCT-GATCCTCGGCTTGTGCATTATGCCTCTCTGGTCGGCTAAGCG
* *
12931939 CCCGTTCGCTCGTTTCGTGGGTTGGCTTAGG
127 CCCGTACGCTCGTTTCATGGGTTGGCTTAGG
*
12931970 CATACGGAGTTCAATCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
12931996 CATACAGAGT
Statistics
Matches: 270, Mismatches: 61, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
156 6 0.02
157 137 0.51
158 16 0.06
159 106 0.39
160 5 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGTAGCAGGATCGACAGC
ATGCAGAGGGGGACGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCTGGTCGGCTAAGCGCCCG
TACGCTCGTTTCATGGGTTGGCTTAGG
Found at i:12932005 original size:26 final size:26
Alignment explanation
Indices: 12931969--12932021 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12931959 GTTGGCTTAG
*
12931969 GCATACGGAGTTCAATC-CATGTCTAA
1 GCATACAGAGTTCAATCTCA-GTCTAA
*
12931995 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCAATCTCAGTCTAA
12932021 G
1 G
12932022 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCTCAGTCTAA
Found at i:12932378 original size:171 final size:170
Alignment explanation
Indices: 12931995--12932394 Score: 461
Period size: 171 Copynumber: 2.3 Consensus size: 170
12931985 CCATGTCTAA
* *
12931995 GCATACAGAGTTCATTCTCAGTCTAAGATC-AGACCGGCTCGAGGGTTGCGACAGCAGGACTAGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAG-CCGGATCGAGGGTTGCGACAGCAGGACTAGC
* * *
12932059 AATAGGATCAACAGCACGCAGGGGGGACTTGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGA
65 AAGAGGATCAACAGCACGCAGGGGGGACTTGGCCGATCCCCGGCTTACACATTATGCCTCTCCGA
* *
12932124 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * *
12932165 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAA-CCAGATCGAGGGTTGTGGCAGCAGGACT-G
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAAGCCGGATCGAGGGTTGCGACAGCAGGACTAG
** * * ** *
12932227 ACAACGA-GATCGGCAGCCCGCAGAGGGGGA-TTGGGCTGATCGTCGGCTTACGCATTATGCCTC
64 -CAA-GAGGATCAACAGCACGCAG-GGGGGACTT-GGCCGATCCCCGGCTTACACATTATGCCTC
* * *
12932290 TCCTACCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
125 TCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
12932336 GCATACGGAGTTCATTCCCAATCTAAGATCAAGTCGGATCGAGGGTTGCGACATCAGGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAGCCGGATCGAGGGTTGCGACAGCAGGA
12932395 TCGACAAAAC
Statistics
Matches: 190, Mismatches: 31, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
169 3 0.02
170 68 0.36
171 115 0.61
172 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (170 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAGCCGGATCGAGGGTTGCGACAGCAGGACTAGCA
AGAGGATCAACAGCACGCAGGGGGGACTTGGCCGATCCCCGGCTTACACATTATGCCTCTCCGAC
CGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12932663 original size:158 final size:159
Alignment explanation
Indices: 12932272--12932839 Score: 391
Period size: 158 Copynumber: 3.6 Consensus size: 159
12932262 CTGATCGTCG
* * * * *
12932272 GCTTACGCATTATGCCTCTCCTACC-GACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
1 GCTTACGCATTATGCCTCTCCGACCAG-CTCAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAG
* * * * * * * *
12932336 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCA-AGTCGGATCGAGGGTTGCGACA-TCAGGATC
65 GCATA-AGAGTTCATT-CCATGTCTAAGCACCAGA-CCGGACCGAGGGCTGTGACAGT-AGGACC
** * * * * * * **
12932397 GACAAAACGCA-AGGGGGATCGAGTTGATCCCTG
126 GACAGCACGTAGAGGAGGACCAAGCTAATCCCCA
* * * * * * * * * * *
12932430 GCTTACGAATTCTGCCTCTTCGGCCGGCTGAACGCCCGCATGCCCGTTTCATGGGTTGGCTTAGG
1 GCTTACGCATTATGCCTCTCCGACCAGCTCAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGG
* * * * * *
12932495 CACAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCA-TCAGGACCGAC
66 CATA-AGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGCTGTGACAGT-AGGACCGAC
**
12932558 AGCACGTAGAGGAGGACCGGGCTAATCCCCA
129 AGCACGTAGAGGAGGACCAAGCTAATCCCCA
* * * ** * * * * *
12932589 GCTTGCGCATTATTCCTCTTCGACTGGCTCAGTGCCTGTACGTTCATTTCATGGGTTGACTTATG
1 GCTTACGCATTATGCCTCTCCGACCAGCTCAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGG
* * * * *
12932654 CATAAGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGATGGCTGTGACAGTAGGATCGATA
66 CATAAGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGCTGTGACAGTAGGACCGACA
* * *
12932717 GCACGTAGGGGGGGACCAAGCTGATCCCCA
130 GCACGTAGAGGAGGACCAAGCTAATCCCCA
* * ** *
12932747 GCTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGTACGCTCGCTTCGTGGGTTGGCTTAGG
1 GCTTACGCATTATGCCTCTCCGACCAGCTCAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGG
*
12932812 CATACGAAGTTCATTCCATGTCTAAGCA
66 CATAAG-AGTTCATTCCATGTCTAAGCA
12932840 TACGGAGTTC
Statistics
Matches: 318, Mismatches: 81, Indels: 20
0.76 0.19 0.05
Matches are distributed among these distances:
157 5 0.02
158 224 0.70
159 88 0.28
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
GCTTACGCATTATGCCTCTCCGACCAGCTCAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGG
CATAAGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGCTGTGACAGTAGGACCGACAG
CACGTAGAGGAGGACCAAGCTAATCCCCA
Done.