Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 65 of 138
Found at i:12932807 original size:317 final size:322
Alignment explanation
Indices: 12932093--12932838 Score: 788
Period size: 317 Copynumber: 2.3 Consensus size: 322
12932083 GGACTTGGCC
* * *
12932093 GATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
12932158 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGATCGAGGGTTGTGGCAGCAGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGG
* * ** * ** *
12932223 ACTGACAACGAGATCGGCAGCCCGCAGAGGGGGATTGGGCTGATCGTCGGCTTACGCATTATGCC
131 A--GAC-AC-AGA---GCAGCACGCAGAGGAGGACCGGGCTAATCCCCAGCTTACGCATTATGCC
* * * * *
12932288 TCTCCTACCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
189 TCTCCGACCGACTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
* * * * *
12932353 CCAATCTAAGATCAAGTCGGATCGAGGGTTGCGACATCAGGATCGACAAAACGCAAGGGGGATCG
254 CCAATCTAAGATCAAGCCGGACCGAGGGCTGCGACATCAGGATCGACAAAACGCAAGGGGGACCA
*
12932418 AGTT
319 AGCT
* * * * * * * *
12932422 GATCCCTGGCTTACGAATTCTGCCTCTTCGGCCGGCTGAACGCCCGCATGCCCGTTTCATGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * ** *
12932487 GGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCATCA-G
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGG
* * * *
12932551 -GAC-C-GA-CAGCACGTAGAGGAGGACCGGGCTAATCCCCAGCTTGCGCATTATTCCTCTTCGA
131 AGACACAGAGCAGCACGCAGAGGAGGACCGGGCTAATCCCCAGCTTACGCATTATGCCTCTCCGA
* * * * * * *
12932612 CTGGCTCAGTGCCTGTACGTTCATTTCATGGGTTGACTTATGCATA-AGAGTTCATTCCCAGTCT
196 CCGACTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCT
* * * * ** * *
12932676 AAGATC-GGACCGGACCGATGGCTGTGACAGT-AGGATCGATAGCACGTAGGGGGGGACCAAGCT
261 AAGATCAAG-CCGGACCGAGGGCTGCGACA-TCAGGATCGACAAAACGCA-AGGGGGACCAAGCT
* * * *
12932739 GATCCCCAGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGTACGCTCGCTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
12932804 GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12932839 ATACGGAGTT
Statistics
Matches: 342, Mismatches: 72, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
315 1 0.00
316 50 0.15
317 175 0.51
321 2 0.01
323 1 0.00
325 3 0.01
328 1 0.00
329 109 0.32
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (322 bp):
GATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGG
AGACACAGAGCAGCACGCAGAGGAGGACCGGGCTAATCCCCAGCTTACGCATTATGCCTCTCCGA
CCGACTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCT
AAGATCAAGCCGGACCGAGGGCTGCGACATCAGGATCGACAAAACGCAAGGGGGACCAAGCT
Found at i:12932840 original size:26 final size:26
Alignment explanation
Indices: 12932811--12932863 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12932801 GTTGGCTTAG
12932811 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
12932837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12932863 G
1 G
12932864 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12940457 original size:26 final size:26
Alignment explanation
Indices: 12940417--12940469 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12940407 GTTGACTTAC
*
12940417 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
* * *
12940443 GCATACGGAGATCATTCCTAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
12940469 G
1 G
12940470 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:12940795 original size:26 final size:26
Alignment explanation
Indices: 12940759--12940811 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12940749 GTTAGCTTAG
12940759 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12940785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12940811 G
1 G
12940812 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12942672 original size:821 final size:821
Alignment explanation
Indices: 12941089--12943491 Score: 3947
Period size: 821 Copynumber: 2.9 Consensus size: 821
12941079 CCATTAAAGT
* *
12941089 GTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATATTCTCCACTTCGAGTTTTTAGCTGA
1 GTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCTACTTCGAGTTTTTAGCTGA
* * * * ** * *
12941154 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTTTATTAAATTTGGGGACAAAACTCTT
66 ATTTTTTTGTGCATGCCAAAAAAAAGAAAAGGATCACCTATACCAAATTTGGGGGCAAAACGCTT
* * * * *
12941219 TCTAAAAAAAGTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACG
131 TCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * ** *
12941284 GGTTGTCTTGCCATGAAACTTCACATGAAG-GCTTAGGGGACCATTGTATGAATTTACACGCCAT
196 GGTAGTCTTGCCACGAAACTTCACATGAAGAG-TTAGGGGAAAATTGTATGAATTTACAAGCCAT
12941348 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATC
260 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATC
12941413 CCTAGCTTGCGTATCCTGTCTCTCTGGTCGGTTGAGCGTCTGCACGCTCGTTTCATGGGTTGACT
325 CCTAGCTTGCGTATCCTGTCTCTCTGGTCGGTTGAGCGTCTGCACGCTCGTTTCATGGGTTGACT
12941478 TAGGCATACAGAGTTCATCCTAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAG
390 TAGGCATACAGAGTTCATCCTAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAG
12941543 ATTGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGGGGGGATCGGGTCGATCCTCGGCTTGCGT
455 ATTGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGGGGGGATCGGGTCGATCCTCGGCTTGCGT
12941608 ATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTTGTAGGTTGGCTTAGGCATAGGGA
520 ATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTTGTAGGTTGGCTTAGGCATAGGGA
12941673 GTTCATTCCATGTCTGAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGAGACAGGCAGCATACAAA
585 GTTCATTCCATGTCTGAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGAGACAGGCAGCATACAAA
12941738 GGGGGACCGGGCTGATCCCTAGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCT
650 GGGGGACCGGGCTGATCCCTAGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCT
12941803 CATTTAATGGGTTGGCTTAGGTATACGGAGTTTATTCCATATCTAAGCATGCGGATTTCATTCCA
715 CATTTAATGGGTTGGCTTAGGTATACGGAGTTTATTCCATATCTAAGCATGCGGATTTCATTCCA
12941868 TGTCTGAGCGCCCGCACGCCTGCACGTTTCGTTTCGTGGCCA
780 TGTCTGAGCGCCCGCACGCCTGCACGTTTCGTTTCGTGGCCA
12941910 GTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCTACTTCGAGTTTTTAGCTGA
1 GTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCTACTTCGAGTTTTTAGCTGA
12941975 ATTTTTTTGTGCATGCCAAAAAAAAGAAAAGGATCACCTATACCAAATTTGGGGGCAAAACGCTT
66 ATTTTTTTGTGCATGCCAAAAAAAAGAAAAGGATCACCTATACCAAATTTGGGGGCAAAACGCTT
12942040 TCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
131 TCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
12942105 GGTAGTCTTGCCACGAAACTTCACATGAAGAGTTGGGGGAAAATTGTATGAATTTACAAGCCATA
196 GGTAGTCTTGCCACGAAACTTCACATGAAGAGTTAGGGGAAAATTGTATGAATTTACAAGCCATA
12942170 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCC
261 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCC
*
12942235 CTAGCTTGCGTATCCTGTCTCTCTGGTCGGTTGAGCGTCTGCACGCTCGTTTCGTGGGTTGACTT
326 CTAGCTTGCGTATCCTGTCTCTCTGGTCGGTTGAGCGTCTGCACGCTCGTTTCATGGGTTGACTT
12942300 AGGCATACAGAGTTCATCCTAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGA
391 AGGCATACAGAGTTCATCCTAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGA
* * *
12942365 TTGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGATCGGGTCGATCCTTGGCTTGCGTA
456 TTGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGGGGGGATCGGGTCGATCCTCGGCTTGCGTA
* * *
12942430 TTCTGCCTCTCCGACTGGCTGAGCGCCCGCATGCCCATTTTGTAGGTTGGCTTAGGCATAGGGAG
521 TTCTACCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTTGTAGGTTGGCTTAGGCATAGGGAG
12942495 TTCATTCCATGTCTGAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGAGACAGGCAGCATACAAAG
586 TTCATTCCATGTCTGAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGAGACAGGCAGCATACAAAG
12942560 GGGGACCGGGCTGATCCCTAGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCTC
651 GGGGACCGGGCTGATCCCTAGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCTC
12942625 ATTTAATGGGTTGGCTTAGGTATACGGAGTTTATTCCATATCTAAGCATGCGGATTTCATTCCAT
716 ATTTAATGGGTTGGCTTAGGTATACGGAGTTTATTCCATATCTAAGCATGCGGATTTCATTCCAT
12942690 GTCTGAGCGCCCGCACGCCTGCACGTTTCGTTTCGTGGCCA
781 GTCTGAGCGCCCGCACGCCTGCACGTTTCGTTTCGTGGCCA
12942731 GTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCTACTTCGAGTTTTTAGCTGA
1 GTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCTACTTCGAGTTTTTAGCTGA
*
12942796 ATTTTTTTGTGCATGCC-AAAAAAAGAAAAGGATCACCTCTACCAAATTTGGGGGCAAAACGCTT
66 ATTTTTTTGTGCATGCCAAAAAAAAGAAAAGGATCACCTATACCAAATTTGGGGGCAAAACGCTT
12942860 TCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
131 TCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
12942925 GGTAGTCTTGCCACGAAACTTCACATGAAGAGTTAGGGGAAAATTGTATGAATTTACAAGCCATA
196 GGTAGTCTTGCCACGAAACTTCACATGAAGAGTTAGGGGAAAATTGTATGAATTTACAAGCCATA
*
12942990 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCTACCTACCACCCGTTCGAT-C
261 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCC
* * * *
12943054 CTCAGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGT-TCGTACGATCGTTTCATGGGTTGAC
326 CT-AGCTTGCGTATCCTGTCTCTCTGGTCGGTTGAGCGTCT-GCACGCTCGTTTCATGGGTTGAC
* * *
12943118 TTAGGCATAC-GAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCAGAC
389 TTAGGCATACAG-AGTTCAT-CCTAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
** * ** ** ** *
12943182 -AGGACCGAGGGTTACAACAGCAGGATCGACAGCACATAGGGGGGACCGGGTCGATCCTCGGCTT
452 TA-GATTGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGGGGGGATCGGGTCGATCCTCGGCTT
* * * * * * * ** ** *
12943246 GCGCATTCTACCTCTTCGGCCGACTGAACGCCCGTACACCTGTTTCATGGGTTGGCTTAGGCATA
516 GCGTATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTTGTAGGTTGGCTTAGGCATA
* * * * **
12943311 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACG
581 GGGAGTTCATTCCATGTCTGAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGAGACAGGCAGCATA
* * * * * * ** * * * *
12943376 CAGAGGGGGACCAGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCTGTTCAGTGCCCCCA
646 CAAAGGGGGACCGGGCTGATCCCTAGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCGCCCGCA
* * * * * *
12943441 CGCTCGTTTAAGGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAG
711 CGCTCATTTAATGGGTTGGCTTAGGTATACGGAGTTTATTCCATA-TCTAAG
12943492 ATCAGACCAG
Statistics
Matches: 1484, Mismatches: 91, Indels: 14
0.93 0.06 0.01
Matches are distributed among these distances:
819 5 0.00
820 311 0.21
821 1167 0.79
822 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (821 bp):
GTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCTACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAAAAAAAAGAAAAGGATCACCTATACCAAATTTGGGGGCAAAACGCTT
TCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
GGTAGTCTTGCCACGAAACTTCACATGAAGAGTTAGGGGAAAATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCC
CTAGCTTGCGTATCCTGTCTCTCTGGTCGGTTGAGCGTCTGCACGCTCGTTTCATGGGTTGACTT
AGGCATACAGAGTTCATCCTAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGA
TTGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGGGGGGATCGGGTCGATCCTCGGCTTGCGTA
TTCTACCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTTGTAGGTTGGCTTAGGCATAGGGAG
TTCATTCCATGTCTGAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGAGACAGGCAGCATACAAAG
GGGGACCGGGCTGATCCCTAGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCTC
ATTTAATGGGTTGGCTTAGGTATACGGAGTTTATTCCATATCTAAGCATGCGGATTTCATTCCAT
GTCTGAGCGCCCGCACGCCTGCACGTTTCGTTTCGTGGCCA
Found at i:12943628 original size:158 final size:157
Alignment explanation
Indices: 12943148--12943839 Score: 522
Period size: 158 Copynumber: 4.3 Consensus size: 157
12943138 CCCAGTCTAA
* ***
12943148 GCATACAGAGTTCATTCCCAGTCCAAGATCAGA-CAGGACCGAGGGTTACAACAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTACGGTAGCAGGATCGAC
* * * * * * *
12943212 AGCACATAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTTCGGCCGACTGAACGC
65 AGCACGTAGGGGGGACC-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
12943277 CCGTACAC-CTGTTTCA-TGGGTTGGCTTAG
129 CCGTACGCTC-GTTT-AGTGGGTTGGCTTAG
** ** ** * * *
12943306 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGACCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGA
* * * * * *
12943369 CAGCACGCAGAGGGGGACCAGG-CTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCTGTTCAG
64 CAGCACGTAG-GGGGGACC-GGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* ** *
12943433 TGCCCCCACGCTCGTTTAAG-GGGTTGACTTAG
126 CGCCCGTACGCTCGTTT-AGTGGGTTGGCTTAG
* * *
12943465 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
* * *
12943530 GCACGTAGGGGGGACCGCGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCTACCGGCTGAGCACC
66 GCACGTAGGGGGGACCG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
12943595 CGTACGCTCGTTCT-GTGGGTTGGCTTAG
130 CGTACGCTCGTT-TAGTGGGTTGGCTTAG
* * * * *
12943623 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-----A-C--G----GTA
* * ** * * ** *
12943688 GCAGGATCAACAGCACGCAGAAGGGATCGGGTCGATCCTCAACTTGCGCATTCTGCCTCTCCGGC
54 GCAGGATCGACAGCACGTAGGGGGGA-CCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
** * * * **
12943753 CGATTGAGCGCCCGCACGTTCATTTCCTGGGTTGGCTTAG
118 CGGCTGAGCGCCCGTACGCTCGTTTAGTGGGTTGGCTTAG
* * *
12943793 GAATACGGAGTTCATT-CCATGTCTAAGCCTCAG-CCAGACCGAGGGTT
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTT
12943840 GTGGCAGCAG
Statistics
Matches: 416, Mismatches: 89, Indels: 46
0.75 0.16 0.08
Matches are distributed among these distances:
157 5 0.01
158 158 0.38
159 122 0.29
160 3 0.01
163 1 0.00
164 1 0.00
166 1 0.00
169 4 0.01
170 116 0.28
171 5 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
GCACGTAGGGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GTACGCTCGTTTAGTGGGTTGGCTTAG
Found at i:12943809 original size:170 final size:171
Alignment explanation
Indices: 12943560--12943922 Score: 439
Period size: 170 Copynumber: 2.1 Consensus size: 171
12943550 CGGTCCCCGG
** * * * *
12943560 CTTGCGCATTCTGCCTCTCCTACCGGCTGAGCACCCGTACGCTCGTTCTGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTCTCTGGGTTGGCTTAGGA
* *
12943625 ATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCAAGGGTTACGACAGCAGGACCAGCA
66 ATACGGAGTTCATT-CCATGTCTAAGCATCAG-CCAGACCAAGGGTTACGACAGCAGGACCAGCA
*
12943688 GCAGGATCAACAGCACGCAGA-AGGGATCGGGTCGATC-CTCAA
129 GCAGGATCAACAGCACGCAGAGAGGGACCGGGTCGATCTCT-AA
* * * *
12943730 CTTGCGCATTCTGCCTCTCCGGCCGATTGAGCGCCCGCACGTTCATT-TCCTGGGTTGGCTTAGG
1 CTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTCT-CTGGGTTGGCTTAGG
* * ** *
12943794 AATACGGAGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGCAG
65 AATACGGAGTTCATTCCATGTCTAAGCATCAGCCAGACCAAGGGTTACGACAGCAGGACCAGCAG
* * * * *
12943859 CGGGATCGACAGCATGCAGAGGGGGACCGGGTTGATCTCTAA
130 CAGGATCAACAGCACGCAGAGAGGGACCGGGTCGATCTCTAA
*
12943901 CTTGCGCATTATGCCTCTCCGG
1 CTTGCGCATTCTGCCTCTCCGG
12943923 TCGGCCTCTC
Statistics
Matches: 164, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
169 4 0.02
170 119 0.73
171 39 0.24
172 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (171 bp):
CTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTCTCTGGGTTGGCTTAGGA
ATACGGAGTTCATTCCATGTCTAAGCATCAGCCAGACCAAGGGTTACGACAGCAGGACCAGCAGC
AGGATCAACAGCACGCAGAGAGGGACCGGGTCGATCTCTAA
Found at i:12944368 original size:160 final size:159
Alignment explanation
Indices: 12944011--12944506 Score: 375
Period size: 160 Copynumber: 3.1 Consensus size: 159
12944001 AAGCACACAA
* * * ** * * *
12944011 AGTTCATTCCCA-GTCTAAGATCAGACTGGA-TCGAGGGTTGCAGTAATAGGATTGGCAACACGC
1 AGTTCATT-CCATGTCTAAGATCAGACTAGACT-AAGGGTTGCAGCAGCAGGATCGACAGCACGC
* * * * * * *
12944074 AA-GGGGGACCGAGG-CGATCCCCGACTTGCCCATTCTG-CCTCTCC-AACTGGCTGAGCGCCTG
64 AAGGGGGGACCG-GGCCGATCACCGACTTGCGCATTATGCCCT-TCCGATC-GACTCAGCGCCCG
* * * *
12944135 CACG-TCCATTTCGTGGGTTGGCTTAGGCATAGGG
126 CACGCT-CATTCCATGGGTTGACTTAGGCATACGG
** * * * * ** ** *
12944169 AGTTCATTCCATGTCTAAGCCCCAGTC-GGATTGAGGGTTGTGGCAGTGGGA-CTGGCAGCACGC
1 AGTTCATTCCATGTCTAAG-ATCAGACTAGACTAAGGGTTGCAGCAGCAGGATC-GACAGCACGC
* * * * *
12944232 AGAGGGGGGACCGGGCCGATCATCGGCTTGCGCATTATGCCTCTT-CGGTCGGCTCAGTGCCCGC
64 A-AGGGGGGACCGGGCCGATCACCGACTTGCGCATTATGCC-CTTCCGATCGACTCAGCGCCCGC
* * *
12944296 ACGCTCGTTTCATGGGTTGACTTATGCATACGG
127 ACGCTCATTCCATGGGTTGACTTAGGCATACGG
* *
12944329 AGTTCATTCC-TAGTCTAAGATCAGACTAGACTAAGGGTTGCAGCAGCAGGATCGACAGTACGTA
1 AGTTCATTCCAT-GTCTAAGATCAGACTAGACTAAGGGTTGCAGCAGCAGGATCGACAGCACGCA
* ** * * *
12944393 TGGGGGGATTGGGCCGATCCCCGACTTGCGCATTCTGCCCTTCCGATCGACTGAGCGCCCGCACG
65 AGGGGGGACCGGGCCGATCACCGACTTGCGCATTATGCCCTTCCGATCGACTCAGCGCCCGCACG
* *
12944458 CTCATTCCGTGGGTTGGCTTAGGCATACGG
130 CTCATTCCATGGGTTGACTTAGGCATACGG
*
12944488 AGTTTATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
12944507 CATACGGAGT
Statistics
Matches: 267, Mismatches: 55, Indels: 31
0.76 0.16 0.09
Matches are distributed among these distances:
157 3 0.01
158 45 0.17
159 104 0.39
160 108 0.40
161 5 0.02
162 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGATCAGACTAGACTAAGGGTTGCAGCAGCAGGATCGACAGCACGCAA
GGGGGGACCGGGCCGATCACCGACTTGCGCATTATGCCCTTCCGATCGACTCAGCGCCCGCACGC
TCATTCCATGGGTTGACTTAGGCATACGG
Found at i:12944523 original size:26 final size:26
Alignment explanation
Indices: 12944480--12944532 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12944470 GTTGGCTTAG
12944480 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTTATTCCCA-GTCTAA
12944506 GCATACGGAGTTCT-TTCCCAGTCTAA
1 GCATACGGAGTT-TATTCCCAGTCTAA
12944532 G
1 G
12944533 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCCAGTCTAA
Found at i:12947025 original size:25 final size:26
Alignment explanation
Indices: 12946996--12947047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12946986 GTTGACTTAG
12946996 GCATAC-GAAGTTCA-TCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12947021 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12947047 G
1 G
12947048 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12947046 original size:26 final size:25
Alignment explanation
Indices: 12946996--12947047 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 25
12946986 GTTGACTTAG
12946996 GCATACGAAGTTCATCCCAGTCTAA
1 GCATACGAAGTTCATCCCAGTCTAA
12947021 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCA-TCCCAGTCTAA
12947047 G
1 G
12947048 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 1 0.04
25 12 0.48
26 12 0.48
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:12947330 original size:159 final size:158
Alignment explanation
Indices: 12947166--12947545 Score: 396
Period size: 158 Copynumber: 2.4 Consensus size: 158
12947156 GCCTGTTTCA
* * **
12947166 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTACGG
** * *
12947230 TAGCGGGACCGGCAGCACGCAGAGGGGGACCAG-G-CTGATCCCTGGCTTGCGCATTATGCCTCT
65 TAGCAAGACCGACAGCACGCAG-GGGGGACC-GCGTC-GATCCCCGGCTTGCGCATTATGCCTCT
* * **
12947293 CCGACCTGTTCAGTGCCCCCACGCTCGTT-TAAG
127 CCGACCGGCTCAGCACCCCCACGCTCGTTCT--G
* * *
12947326 -GGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTACGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAGACCGAGGGTTACGG
** * * *
12947389 TAGCAAGATTGACAGCACGCAGGGGGGACCGCGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCT
65 TAGCAAGACCGACAGCACGCAGGGGGGACCGCGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG
* **
12947454 ACCGGCTGAGCACCCGTACGCTCGTTCTG
130 ACCGGCTCAGCACCCCCACGCTCGTTCTG
* * * *
12947483 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCAAGGGTTACG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTACG
12947546 ACAGCAGGAC
Statistics
Matches: 184, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
157 2 0.01
158 111 0.60
159 71 0.39
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTACGGT
AGCAAGACCGACAGCACGCAGGGGGGACCGCGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGA
CCGGCTCAGCACCCCCACGCTCGTTCTG
Found at i:12947501 original size:158 final size:157
Alignment explanation
Indices: 12947021--12947706 Score: 507
Period size: 159 Copynumber: 4.3 Consensus size: 157
12947011 CCCAGTCTAA
*** *
12947021 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGA-GGTTACAACAGCAGGATCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTACGGTAGCAGGATCGAC
** * * * * * *
12947084 AGCACATAGGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTTCGGCCGACTGAACG
65 AGCACGCA-GGGGGGACC-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
12947149 CCTGTACGC-CTGTTTCA-TGGGTTGGCTTAG
128 CCCGTACGCTC-GTTT-AGTGGGTTGGCTTAG
** ** ** * * *
12947179 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGACCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGA
* * * * *
12947242 CAGCACGCAGAGGGGGACCAGG-CTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCTGTTCAG
64 CAGCACGCAG-GGGGGACC-GGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* ** *
12947306 TGCCCCCACGCTCGTTTAAG-GGGTTGACTTAG
126 CGCCCGTACGCTCGTTT-AGTGGGTTGGCTTAG
* * *
12947338 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
* * *
12947403 GCACGCAGGGGGGACCGCGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCTACCGGCTGAGCACC
66 GCACGCAGGGGGGACCG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
12947468 CGTACGCTCGTTCT-GTGGGTTGGCTTAG
130 CGTACGCTCGTT-TAGTGGGTTGGCTTAG
* * * * *
12947496 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-----A-C--G----GTA
* ** * * ** *
12947561 GCAGGATCAACAGCACGCAGAAGGGATCGGGTCGATCCTCAACTTGCGCATTCTGCCTCTCGGAC
54 GCAGGATCGACAGCACGCAGGGGGGA-CCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
** * * * *
12947626 CGATTGAGCGCCCGCACGTTCATTT-CTGGGTTGGCTTAG
118 CGGCTGAGCGCCCGTACGCTCGTTTAGTGGGTTGGCTTAG
* * *
12947665 GAATACGGAGTTCATT-CCATGTCTAAGCTCAG-CCAGA-CGAGG
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGG
12947707 TTGTGGCAGC
Statistics
Matches: 413, Mismatches: 87, Indels: 47
0.76 0.16 0.09
Matches are distributed among these distances:
157 5 0.01
158 139 0.34
159 141 0.34
160 3 0.01
163 1 0.00
164 1 0.00
166 1 0.00
167 4 0.01
168 7 0.02
169 39 0.09
170 70 0.17
171 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GTACGCTCGTTTAGTGGGTTGGCTTAG
Found at i:12947682 original size:169 final size:168
Alignment explanation
Indices: 12947433--12947790 Score: 427
Period size: 169 Copynumber: 2.1 Consensus size: 168
12947423 CGGTCCCCGG
* * * * * *
12947433 CTTGCGCATTCTGCCTCTCCTACCGGCTGAGCACCCGTACGCTCGTTCTGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTCTCTGGGTTGGCTTAGGA
* *
12947498 ATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGACCAGCAG
66 ATACGGAGTTCATT-CCATGTCTAAGATCAG-CCAGA-CAA-GGTTACGACAGCAGGACCAGCAG
*
12947562 CAGGATCAACAGCACGCAGA-AGGGATCGGGTCGATC-CTCAA
127 CAGGATCAACAGCACGCAGAGAGGGACCGGGTCGATCTCT-AA
* * * *
12947603 CTTGCGCATTCTGCCTCTCGGACCGATTGAGCGCCCGCACGTTCATT-TCTGGGTTGGCTTAGGA
1 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTCTCTGGGTTGGCTTAGGA
* * ** * *
12947667 ATACGGAGTTCATTCCATGTCTAAGCTCAGCCAGACGAGGTTGTGGCAGCAGGACCAGCAGCGGG
66 ATACGGAGTTCATTCCATGTCTAAGATCAGCCAGACAAGGTTACGACAGCAGGACCAGCAGCAGG
* * * *
12947732 ATCGACAGCATGCAGAGGGGGACCGGGTTGATCTCTAA
131 ATCAACAGCACGCAGAGAGGGACCGGGTCGATCTCTAA
*
12947770 CTTGCGCATTATGCCTCTCCG
1 CTTGCGCATTCTGCCTCTCCG
12947791 GTCGGCCTCT
Statistics
Matches: 160, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
166 37 0.23
167 36 0.22
168 9 0.06
169 39 0.24
170 39 0.24
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (168 bp):
CTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTCTCTGGGTTGGCTTAGGA
ATACGGAGTTCATTCCATGTCTAAGATCAGCCAGACAAGGTTACGACAGCAGGACCAGCAGCAGG
ATCAACAGCACGCAGAGAGGGACCGGGTCGATCTCTAA
Found at i:12949098 original size:26 final size:26
Alignment explanation
Indices: 12949067--12949119 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12949057 GTTGACTTAG
*
12949067 GCATACGGAGTTCATGCCCATTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
12949093 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
12949119 G
1 G
12949120 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:12949450 original size:26 final size:26
Alignment explanation
Indices: 12949421--12949473 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12949411 GTTGACTTAG
12949421 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
12949447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
12949473 G
1 G
12949474 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:12949650 original size:354 final size:354
Alignment explanation
Indices: 12948996--12949656 Score: 941
Period size: 354 Copynumber: 1.9 Consensus size: 354
12948986 CACTCGTTCA
* * * *
12948996 ATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGCCCGCATGCTCATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATCATGCCTCTCCGATCGACTGAGCGCCCGCATGCTCATTTCATGGGTTG
** * * *
12949061 ACTTAGGCATACGGAGTTCATGCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
66 ACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
12949126 CCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCTGATCCTCGACTT
131 CCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTT
* * * * *
12949191 GCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCATGCCTGTTTCATGGGTTCGCTTAGGCATA
196 GCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCACGGGTTCGCTTAGGCATA
**
12949256 GGGCATTCATTCCATGCTAAGCCCTGGCCAGAACAAGGGTTGCGGCAGCAGGACTGGCAGCGGGA
261 GGGCATTCATTCCATGCTAAGCCCCAGCCAGAACAAGGGTTGCGGCAGCAGGACTGGCAGCGGGA
12949321 TTGGCAGCACGCAGAGGGGGATCAGGCTG
326 TTGGCAGCACGCAGAGGGGGATCAGGCTG
* * *
12949350 ATCCCCGGCTTGCGTATTATGCCTCTCCGATCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATCATGCCTCTCCGATCGACTGAGCGCCCGCATGCTCATTTCATGGGTTG
12949415 ACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
66 ACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
12949480 CTGGACTGAGGGTTGCGATAGTAGGATCGACAGCACGC-AGGGGGATCGGGCCGATCC-CTGGCT
131 CCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCTC-GACT
* * * ** *
12949543 TGCGCATTCTGCCTCTCTGGCCGACTGGGCGCCCGCACGCCCGTTTTGCGGGTTGGCTTAGGCAT
195 TGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCACGGGTTCGCTTAGGCAT
* * *
12949608 AGGG-AGTTCATTCCATGTCTAAGCCCCAGCCGGATCAAGGGTTGTGGCA
260 AGGGCA-TTCATTCCATG-CTAAGCCCCAGCCAGAACAAGGGTTGCGGCA
12949657 ACGGGACCGG
Statistics
Matches: 267, Mismatches: 37, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
352 2 0.01
353 89 0.33
354 176 0.66
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (354 bp):
ATCCCCGGCTTGCGCATCATGCCTCTCCGATCGACTGAGCGCCCGCATGCTCATTTCATGGGTTG
ACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTT
GCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCACGGGTTCGCTTAGGCATA
GGGCATTCATTCCATGCTAAGCCCCAGCCAGAACAAGGGTTGCGGCAGCAGGACTGGCAGCGGGA
TTGGCAGCACGCAGAGGGGGATCAGGCTG
Found at i:12950322 original size:26 final size:26
Alignment explanation
Indices: 12950292--12950344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12950282 GTTGACTTAG
*
12950292 GCATACGAAGTTCGTCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12950318 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12950344 G
1 G
12950345 ATTAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12950648 original size:160 final size:158
Alignment explanation
Indices: 12950326--12950819 Score: 455
Period size: 158 Copynumber: 3.1 Consensus size: 158
12950316 AAGCATATGA
* * * * * **
12950326 AGTTCATTCCCAGTCTAAGAT-TAGACTAGACCGAGGGTTGTGGCAGCAGGATCGATAGCAC-GT
1 AGTTCATTCCCAGTCTAAGATCCA-ACCAGACCGAGGGTTGTGGCAGCAGGACCGACAACACACA
* * * * * * * *
12950389 AGGAGGGACCGGGCCGATCCTCGGCCTGCG-TTTCTGCCTCTCCGGTCGGCTGAGCTCCCGCACA
65 AGG-GGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAG-TACC-CACA
* * *
12950453 C-C-CATTTCGTGGGTTGTCTTAGGCATAGGG
127 CGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ** *
12950483 AGTTCATTCCACA-TCTAAG-TCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACAACACAC
1 AGTTCATTCC-CAGTCTAAGAT-CCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAACACAC
* * * * *
12950546 AGAGGGGGACCGGGTCGAATCCCC-GACTTGTGCATTATGCCTCTCCGATCGGCTTAGTGCCCAC
64 A-AGGGGGACCAGGTCG-ATCCCCAG-CTTGCGCATTATGCCTCTCCGGTCGGCTGAGTACCCAC
* *
12950610 ACGCTCGTTTCGTGGATTGACTTAGGCATACAG
126 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * *
12950643 AGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGTAGGATCGACAGCACGCAA
1 AGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAACACACAA
* * * * * *
12950708 GGGGGACCAGGTTGATCCCCAGCTTGCGCATTCTGCTTCTCCGGCCGGCTGAGCACCCGCACGCT
66 GGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTACCCACACGCT
*
12950773 CGTTTCGTGGGTTGGCTTAGGCATACGG
131 CGTTTCGTGGGTTGACTTAGGCATACGG
**
12950801 AGTTCATTCCTTGTCTAAG
1 AGTTCATTCCCAGTCTAAG
12950820 CATATGGAGT
Statistics
Matches: 275, Mismatches: 49, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 47 0.17
158 102 0.37
159 32 0.12
160 92 0.33
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAACACACAA
GGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTACCCACACGCT
CGTTTCGTGGGTTGACTTAGGCATACGG
Found at i:12950792 original size:158 final size:157
Alignment explanation
Indices: 12950326--12950819 Score: 521
Period size: 160 Copynumber: 3.1 Consensus size: 157
12950316 AAGCATATGA
* * *
12950326 AGTTCATTCCCAGTCTAAGAT-TAGACTAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACG-T
1 AGTTCATTCCCAGTCTAAGATCCA-ACTAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * * *
12950389 AGGAGGGACCGGGCCGATCCTCGGCCTGCG-TTTCTGCCTCTCCGGTCGGCTGAGCTCCCGCACA
65 AGG-GGGACCGGGTCGATCC-CCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACG
* * * *
12950453 CCCATTTCGTGGGTTGTCTTAGGCATAGGG
128 CTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * *
12950483 AGTTCATTCCACA-TCTAAG-TCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACAACACAC
1 AGTTCATTCC-CAGTCTAAGAT-CCAACTAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * ** *
12950546 AGAGGGGGACCGGGTCGAATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTTAGTGCCCACA
64 A-AGGGGGACCGGGTCG-ATCCCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCA
* *
12950611 CGCTCGTTTCGTGGATTGACTTAGGCATACAG
126 CGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
12950643 AGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGTAGGATCGACAGCACGCAA
1 AGTTCATTCCCAGTCTAAGATCCAACTAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAA
* * * *
12950708 GGGGGACCAGGTTGATCCCCAGCTTGCGCATTCTGCTTCTCCGGCCGGCTGAGCACCCGCACGCT
66 GGGGGACCGGGTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCT
*
12950773 CGTTTCGTGGGTTGGCTTAGGCATACGG
130 CGTTTCGTGGGTTGACTTAGGCATACGG
**
12950801 AGTTCATTCCTTGTCTAAG
1 AGTTCATTCCCAGTCTAAG
12950820 CATATGGAGT
Statistics
Matches: 273, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 47 0.17
158 98 0.36
159 27 0.10
160 99 0.36
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCCAACTAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAA
GGGGGACCGGGTCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGG
Found at i:12950829 original size:26 final size:26
Alignment explanation
Indices: 12950793--12950845 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12950783 GTTGGCTTAG
**
12950793 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12950819 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12950845 G
1 G
12950846 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12952327 original size:171 final size:171
Alignment explanation
Indices: 12952064--12952387 Score: 384
Period size: 171 Copynumber: 1.9 Consensus size: 171
12952054 TAAGATTGGA
* * *
12952064 CCGGACCGAGGGTTGCGACAGCAGGACTAGCAGCAGGATCGACAGCATGCACGGAGGGATCAGGC
1 CCGGACCAAGGGTTGCGACAGCAGGACTAGCAGCAGGATCGACAGCACGCACGAAGGGATCAGGC
* * * * * *
12952129 CGATCCTCGACTTGCAAATTTTGCCTCTCTGACTGGCTGATCATCCGCACGC-TCGTTTCATGGG
66 CGATCCCCGACTTGCAAATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCAT-GTTTCATGGG
*
12952193 TTG-GCTTAGGCATACGGAGTTCATTCTATGTCCAAACCCTAG
130 -TGAACTTAGGCATACGGAGTTCATTCTATGTCCAAACCCTAG
* * * * * *
12952235 CCGGACCAAGGGTTGTGGCAGCAGGACTGGTAGCGGGATCGACAGCACGCA-GAAGGGGATCGGG
1 CCGGACCAAGGGTTGCGACAGCAGGACTAGCAGCAGGATCGACAGCACGCACGAA-GGGATCAGG
** * ** * * *
12952299 TTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGTTGAGCACCCGTACGCATGTTTCATGGG
65 CCGATCCCCGACTTGCAAATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCATGTTTCATGGG
12952364 TGAACTTAGGCATACGGAGTTCAT
130 TGAACTTAGGCATACGGAGTTCAT
12952388 CCCCAGTCTA
Statistics
Matches: 126, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
170 4 0.03
171 121 0.96
172 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.22
Consensus pattern (171 bp):
CCGGACCAAGGGTTGCGACAGCAGGACTAGCAGCAGGATCGACAGCACGCACGAAGGGATCAGGC
CGATCCCCGACTTGCAAATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCATGTTTCATGGGT
GAACTTAGGCATACGGAGTTCATTCTATGTCCAAACCCTAG
Found at i:12952403 original size:26 final size:26
Alignment explanation
Indices: 12952373--12952425 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12952363 GTGAACTTAG
12952373 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
12952399 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12952425 G
1 G
12952426 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12952745 original size:26 final size:26
Alignment explanation
Indices: 12952715--12952767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12952705 GTTGACTTAT
12952715 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12952741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12952767 G
1 G
12952768 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12952978 original size:131 final size:131
Alignment explanation
Indices: 12952741--12952985 Score: 289
Period size: 131 Copynumber: 1.9 Consensus size: 131
12952731 CCCAGTCTAA
* *
12952741 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTAAGGGTTGCGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACTAAGGGTTGCGACAGCAGGATCGACA
* * * *
12952806 GCACGTAGGGGGGACCTGGTCGATCCCCAGCTTGCACATTCTACCTCTCTGGTTGGATCGAGGGT
66 GCACGCAAGAGGGACCGGGTCGATCCCCAGCTTGCACATTCTACCTCTCTGGTTGGATCGAGGGT
12952871 T
131 T
* * * * **
12952872 GCATACAGAGTTCATTCCCAATCTAAGATTGGA-CTGGACTGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGATC-GGACTAAGGGTTGCGACAGCAGGATCGAC
* * * **
12952936 AGCATGCAAGAGGGATCGGG-CTGAT-CCCAGGTTTGCGTATTCTACCTCTC
65 AGCACGCAAGAGGGACCGGGTC-GATCCCCA-GCTTGCACATTCTACCTCTC
12952986 CGGGCCGCTG
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
130 6 0.06
131 88 0.94
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (131 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACTAAGGGTTGCGACAGCAGGATCGACA
GCACGCAAGAGGGACCGGGTCGATCCCCAGCTTGCACATTCTACCTCTCTGGTTGGATCGAGGGT
T
Found at i:12953218 original size:26 final size:26
Alignment explanation
Indices: 12953189--12953241 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12953179 GTTGGCTTAG
12953189 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12953215 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12953241 G
1 G
12953242 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12954468 original size:26 final size:26
Alignment explanation
Indices: 12954439--12954491 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12954429 GGTTGACATG
12954439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12954465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12954491 G
1 G
12954492 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12954761 original size:158 final size:158
Alignment explanation
Indices: 12954537--12954969 Score: 455
Period size: 158 Copynumber: 2.7 Consensus size: 158
12954527 AGTAGCACAT
* * * * * * *
12954537 AGGGGGGACCGGGCCGGTCCCTGGCTTGCTCATTCTGCCTCTCCGGCCGACTGAGCACCCACACG
1 AGGGGGGATCGGGCC-ATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG
* * * * *
12954602 CTCGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCACGTCTAAGCCCCAGTC-AGACCGA
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGACTAGACCAA
* **
12954666 GAGTTGTGGCAGCGGGACCTG-CAGCACGC-
129 GAGTTGCGGCAGCAAGACC-GACAGCACGCA
* * * *
12954695 AGAGGGGGATCGGGCCATCCCTGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCGTACG
1 AG-GGGGGATCGGGCCATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG
* * * * *
12954760 CTCGTTTCGTGGGTTGACTT-GTTCATACGGAGTTCATTCCTAGACTAAG-ATCAGACTGGACCA
65 CTCGTTTCGTGGGTTGGCTTAG-GCATACGGAGTTCATTCC-AGTCTAAGCACCAGACTAGACCA
* *
12954823 AGGGTTGCGGCAGCAAGATCGACAGCACGCA
128 AGAGTTGCGGCAGCAAGACCGACAGCACGCA
* * * * *
12954854 AGGGGGGATCGGGTCGATCCCT-AGCTAACGCATTCTGCCTCTCCAGCCGGTTGAGCGCCCGCAC
1 AGGGGGGATCGGG-CCATCCCTGA-CTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAC
*
12954918 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
64 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCA
12954970 TACGTAGTTC
Statistics
Matches: 225, Mismatches: 39, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
157 6 0.03
158 121 0.54
159 96 0.43
160 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
AGGGGGGATCGGGCCATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGACTAGACCAAGA
GTTGCGGCAGCAAGACCGACAGCACGCA
Found at i:12954978 original size:26 final size:26
Alignment explanation
Indices: 12954941--12954993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12954931 GTTGGCTTAG
12954941 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCGCA-GTCTAA
*
12954967 GCATACGTAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCGCAGTCTAA
12954993 G
1 G
12954994 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCGCAGTCTAA
Found at i:12956148 original size:26 final size:25
Alignment explanation
Indices: 12956118--12956169 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12956108 GTTGGCTGAG
* *
12956118 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATCCCA-GTCTAA
12956144 GCATACAGAGTTCATCCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
12956169 G
1 G
12956170 ACTGGGCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:12956851 original size:26 final size:26
Alignment explanation
Indices: 12956815--12956868 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
12956805 TGGGTTGACT
12956815 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
12956841 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
12956867 TA
1 TA
12956869 AGATCGAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:12957137 original size:159 final size:155
Alignment explanation
Indices: 12956905--12957347 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 155
12956895 CAGCAAGATC
** * * *
12956905 GACAGCACGCAGGGGGGACCAGG-TCGATCCCCAGCTTGCGCATTTTGCCTCTCCGGCTGG-TTG
1 GACAGCACGCAGGGGGGACTGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTAG
*
12956968 AGCATCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCGC
65 AGC-T-CGCACGCCCATTTCATGGGTTGGCTTAGGCATAAG-AGTTCATTCCATGTCTAAGCCGC
* ** * *
12957033 ATTCAGACTAAGGGTTGTGGTTGTAGGACT
127 A-TCAGACCAAGGAATGTGGTAGCAGGACT
* *
12957063 GGCAGCACGCAGAGGGGGACTGGGCTGATCCCCGGGTTGCGCATTATGCCTCTCCGG-TCGGCTC
1 GACAGCACGCAG-GGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCT-GGCT-
* * * *
12957127 AGTGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGACC
63 AGAGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAG-AGTTCATT-CCATGTCTAAG-CC
* * *
12957191 GGATCGGACCGAGGAATGTGGTAGCAGGACT
125 GCATCAGACCAAGGAATGTGGTAGCAGGACT
* * *
12957222 GACAGCACACAGGGGGGGA-TCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCT-
1 GACAGCACGCA-GGGGGGACT-GGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTA
* *
12957285 GAGCGTC-CACACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
64 GAGC-TCGCACGC-C-CATTTCATGGGTTGGCTTAGGCATA-AGAGTTCATTCCATGTCTAAGC
12957348 ATATGGAGTT
Statistics
Matches: 239, Mismatches: 31, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
157 7 0.03
158 19 0.08
159 197 0.82
160 13 0.05
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
GACAGCACGCAGGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTAGA
GCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAGAGTTCATTCCATGTCTAAGCCGCATCA
GACCAAGGAATGTGGTAGCAGGACT
Found at i:12957350 original size:26 final size:26
Alignment explanation
Indices: 12957320--12957372 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12957310 GTTGGCTTAG
12957320 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
12957346 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12957372 G
1 G
12957373 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12957721 original size:26 final size:26
Alignment explanation
Indices: 12957690--12957741 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12957680 TGACTTAGGC
12957690 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
*
12957716 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
12957742 TCAGACCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:12957926 original size:21 final size:21
Alignment explanation
Indices: 12957902--12957967 Score: 114
Period size: 21 Copynumber: 3.1 Consensus size: 21
12957892 GTCTAAGCCC
*
12957902 CAGTCGGATTGAGGGTTGTGG
1 CAGTCGGATCGAGGGTTGTGG
*
12957923 CAGTCGGATCAAGGGTTGTGG
1 CAGTCGGATCGAGGGTTGTGG
12957944 CAGTCGGATCGAGGGTTGTGG
1 CAGTCGGATCGAGGGTTGTGG
12957965 CAG
1 CAG
12957968 CGGGACCGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.17, C:0.14, G:0.45, T:0.24
Consensus pattern (21 bp):
CAGTCGGATCGAGGGTTGTGG
Found at i:12958269 original size:26 final size:26
Alignment explanation
Indices: 12958233--12958285 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12958223 GTTGGCTTGG
12958233 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12958259 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12958285 G
1 G
12958286 ATTTTGAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12960348 original size:26 final size:26
Alignment explanation
Indices: 12960318--12960370 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12960308 GTTGGCTTAG
12960318 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12960344 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12960370 G
1 G
12960371 ATTTTAGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12961589 original size:157 final size:159
Alignment explanation
Indices: 12961310--12961715 Score: 417
Period size: 157 Copynumber: 2.6 Consensus size: 159
12961300 GAGGGACCGG
* * ** * * ** *
12961310 ACCGATCCCCGGCTTGCATATTATGCCTCTCCGATCGGCTCAACGATCGCACGCTCATTTTGTGG
1 ACCGATCCCCCGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* * * * * * *
12961375 GTTAACTTATGCATACGGTGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG-AGGCAA
66 GTTAACTTACGCATACGGAGTTTATCCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCA-GCAA
*
12961439 CA-GAACGACAACATGCAGG-GGGGACCAA
130 CAGGAACGACAACACGCAGGTGGGGACCAA
* *
12961467 ACCGAT-CCCTGACTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATG
1 ACCGATCCCCCG-CTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTG
* * *
12961531 GGTTTACTTAGGCATACGGAGTTTATCCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCAGCAG
65 GGTTAACTTACGCATACGGAGTTTATCCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCAGCAA
* * * *
12961596 TAGGATCGACAGCACGCAGGTGGGGACCGA
130 CAGGAACGACAACACGCAGGTGGGGACCAA
* * * * * * * *
12961626 GCCGATCCCCCGCTTGCGCATTCTGCGTCTTCG-GCTGGCTGAGCGCCCGCATGCTCGTTTCGTG
1 ACCGATCCCCCGCTTACGCATTATGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCATTTCGTG
** *
12961690 GGTTGGCTTACACATACGGAGTTTAT
65 GGTTAACTTACGCATACGGAGTTTAT
12961716 TCCATGTCTA
Statistics
Matches: 205, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
156 4 0.02
157 104 0.51
158 16 0.08
159 77 0.38
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (159 bp):
ACCGATCCCCCGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGG
GTTAACTTACGCATACGGAGTTTATCCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCAGCAAC
AGGAACGACAACACGCAGGTGGGGACCAA
Found at i:12962112 original size:26 final size:26
Alignment explanation
Indices: 12962081--12962131 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12962071 GTTGACTTAG
*
12962081 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12962107 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
12962132 TGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12962632 original size:26 final size:26
Alignment explanation
Indices: 12962584--12962634 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12962574 TAGGTTAGGT
*
12962584 ATACGGAGTTCATTCCACGTCTAAGC
1 ATACGGAGTTCATTCCACATCTAAGC
12962610 ATACGGAGTTCATTCC-CAATCTAAG
1 ATACGGAGTTCATTCCAC-ATCTAAG
12962635 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCACATCTAAGC
Found at i:12963981 original size:159 final size:158
Alignment explanation
Indices: 12963595--12963984 Score: 363
Period size: 159 Copynumber: 2.4 Consensus size: 158
12963585 TCTATCGTTC
* * * *
12963595 CGACCGACTGAGTGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATG
1 CGACCGGCTGAGTGCCCG-ACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * *** *
12963660 TCTACGCCCCAGTCAGACCGAAGGTTGTGGCAGTGGGACCGATAGCACGCAGAGGGGGACCGGGC
65 TCTAAGCCCCAGCCAGACCGAAGGTTGTGACAGCAAGACCGATAGCACACAGAGGGGGACCGGGC
* * *
12963725 CGATCTCTGGCTTGCGCATTATGCCTCTT
130 CGATCCCCGGCTTACGCATTATGCCTCTT
* * * * * * *
12963754 CGACCGGCTCAGTGCCC-ACGCGCTTGTTTAGTGGGTTGACTTAGGCATACGGATTTCATTGC-T
1 CGACCGGCTGAGTGCCCGACGCCCAT-TTCA-TGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
**** * * * *
12963817 AGTCTAAG-ATTGGACCAGACCGAGGGTTGTGACAGCAAGATCGATAGCACATAGGGGGGGACCG
64 -GTCTAAGCCCCAG-CCAGACCGAAGGTTGTGACAGCAAGACCGATAGCACACAGAGGGGGACCG
* * * * * *
12963881 GGTCGGTCCCCGGCTTATGCATTCTGGCTTTT
127 GGCCGATCCCCGGCTTACGCATTATGCCTCTT
* * *
12963913 CGGCTGGCTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
1 CGACCGGCTGAGTGCCCG-ACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
12963978 TCTAAGC
65 TCTAAGC
12963985 ATATAGAGTT
Statistics
Matches: 180, Mismatches: 43, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.03
158 5 0.03
159 159 0.88
160 4 0.02
161 6 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
CGACCGGCTGAGTGCCCGACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGCCAGACCGAAGGTTGTGACAGCAAGACCGATAGCACACAGAGGGGGACCGGGCC
GATCCCCGGCTTACGCATTATGCCTCTT
Found at i:12963987 original size:26 final size:25
Alignment explanation
Indices: 12963957--12964008 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12963947 GTTGGCTTAG
*
12963957 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
*
12963983 GCATATAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
12964008 G
1 G
12964009 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:12965250 original size:159 final size:159
Alignment explanation
Indices: 12964891--12965396 Score: 393
Period size: 159 Copynumber: 3.2 Consensus size: 159
12964881 CCCAGTCTAA
* * *
12964891 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACA
* * * *
12964956 GCACGCAGGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCATCTCCAGCCGACTGAGCAC
66 GCACGCAGAGGGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCATCTCCAGCCGACTCAACAC
* *
12965021 CCACACGCCCGTTTTGTGGGTTGGCTTAG
131 CCACACGCCCATTTTGTGGGTTGACTTAG
** ** *
12965050 GCATA-GAGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCAGGA-CT
1 GCATACG-GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTACGACAGCAGGATC-
* * * * * * * *
12965111 GGCAGCATGCAGAGGGGGACTG-GATCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTC
62 GACAGCACGCAGAGGGGGACCGAGCT-GATCCCCGGCTTGCGCATTATGCATCTCCAGCCGACTC
* ** *
12965175 AACGCCCGTACGCTCATTTTGTGGGTTGACTTAG
126 AACACCCACACGCCCATTTTGTGGGTTGACTTAG
* * ** * * *
12965209 GCATACGGAGTTGATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTAC-AGTAGCAGCATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGA-CAGCAGGATCGAC
* * ** * * * * * * * *
12965273 AGCACACAG-GGGGGACC-AGGTCGATCCTTGACTTGCACATTCTGCCTCT-CAACCGGCTGAGC
65 AGCACGCAGAGGGGGACCGAGCT-GATCCCCGGCTTGCGCATTATGCATCTCCAGCCGACTCAAC
* * *
12965335 ACCCACACACACAGTCATTTCGTGGGTTGGCTTAG
129 ACCCACACGC-C---CATTTTGTGGGTTGACTTAG
*
12965370 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12965397 CATATGAAGT
Statistics
Matches: 269, Mismatches: 62, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
157 14 0.05
158 41 0.15
159 164 0.61
160 11 0.04
161 39 0.14
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACA
GCACGCAGAGGGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCATCTCCAGCCGACTCAACAC
CCACACGCCCATTTTGTGGGTTGACTTAG
Found at i:12965406 original size:26 final size:26
Alignment explanation
Indices: 12965370--12965422 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12965360 GTTGGCTTAG
12965370 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
12965396 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12965422 G
1 G
12965423 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12965793 original size:26 final size:26
Alignment explanation
Indices: 12965763--12965815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12965753 GTTGACTTAG
*
12965763 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
12965789 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
12965815 G
1 G
12965816 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:12965801 original size:898 final size:872
Alignment explanation
Indices: 12964316--12966137 Score: 2102
Period size: 898 Copynumber: 2.1 Consensus size: 872
12964306 CCACACTGTT
* * * *
12964316 ATTTCGTGCGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGT
1 ATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGT
*** * * * * *
12964381 TGTGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGGCCCCTGACTTGCGCATTCTGCCT
66 TACAGTAGCAGCATCAACAGCACACAGGGGGGACCGGGCTGACCCCTGACTTGCACATTCTGCCT
** ** * * * *
12964446 CTCTGGCCGACTAAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATATGGAGTTAATTCC
131 CTCTAACCGACTAAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCC
* * * *
12964511 ATCTCTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAAGGTTGCATCTACAT
196 ATCTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACAGAACCGAAGGTTGCAGCTACAG
* *
12964576 GACCAACAGCAGGATCAGTAGCACGCAGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCT
261 GACCAACAGCAGGATCAGTAGCACGCAGGGGGACCAGGTCGATCCCCAACTTGCGCATTCTGCCT
* * ** *
12964641 CTCCTACAGGCTAAACACCCGTATGCTCATTTCTTGGGTTGGCTTAGGCATACAGAGTTCATTCC
326 CTCCGACAGGCTAAACACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
* **
12964706 ATGTCTAAACCCAGTCGGATCGAGGGTTGTGGGGACCGGTAACTGGATCGGTAGCACGCAGAGGG
391 ATGTCTAAACCCAGTCGGACCGAGGGTTGTGGGGACCGGTAACTGGATCGACAGCACGCAGAGGG
*
12964771 GACCGGGTTGATCCTCGGCTTGTACATTATGCCTCTCCGGCCGACCTCTCCGACCGGCTGAGCAC
456 GACCGGGTTGATCCTCGGCTTGCACATTATGCCTCTCCGGCCGACCTCTCCGACCGGCTGAGCAC
* * *
12964836 CCATACGCTCGTTTCGTGGGTTGACTTAGGGATACAGAGTTCATCCCCAGTCTAAGCATACGAAG
521 CCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAG
*
12964901 TTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGG
586 TTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCA-G
* * * * *
12964965 GGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCATCTCC-AGCCGACTGAGCACCCACACGC
649 GAGGCACCGAGCCGATCCCCGACTTGCGCATTCTGCATCTCCGA-CCGACTAAGCACCCACACGC
* * * * *
12965029 CCGTTTTGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGG
713 CCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATATCTAAGCCCCAACCAGACTGAGG
** * * *
12965094 GTTGTGGCAGCAGGACTGGCAGCATGCAGAGGGGGA-CTGGATCGATCCCCGGCTTGCGCATTAT
778 GTTGT-GCAGCAGGACCAGCAGCATGCAGAGGGGGACCAGG-CCGATCCCCGGCTTGCGCACTAT
* *
12965158 GCCTCTCCGGTCGGCTCAACGCCCGTACGCTC
841 GCCTCTCCGGGCGGCTCAACGCCCGCACGCTC
* * *
12965190 ATTTTGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCGGACCAAA-CTGAGGG
1 ATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAAATC-GAGGG
* * *
12965254 TTACAGTAGCAGCATCAACAGCACACAGGGGGGACCAGG-TCGATCCTTGACTTGCACATTCTGC
65 TTACAGTAGCAGCATCAACAGCACACAGGGGGGACCGGGCT-GACCCCTGACTTGCACATTCTGC
* * *
12965318 CTCTC-AACCGGCTGAGCACCCACACACACAGTCATTTCGTGGGTTGGCTTAGGCATACGAAGTT
129 CTCTCTAACCGACTAAGCACCCACACAC-C---CATTTCATGGGTTGGCTTAGGCATACGAAGTT
* * * * * **
12965382 CATTCCATGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACTAG-ACCGAGGGTTGTG
190 AATTCCATCTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAAC-AGAACCGAAGGTTGCA
* * *
12965446 GC-AGCAGGACCAGCAGCAGGATTAGTAGCACGCAGGGGGGATCAGGTCGATCCCCAACTTGCGC
254 GCTA-CAGGACCAACAGCAGGATCAGTAGCACGCA-GGGGGACCAGGTCGATCCCCAACTTGCGC
* * * *
12965510 ATTCT-CTCTCTCCGGCTA-GCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAC-
317 ATTCTGC-CTCTCCGAC-AGGCTAAACACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACA
* * **
12965572 GAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGTTTGTGGCAGCAGGACCGGTAGTTGGA
380 G-AGTTCATTCCATGTCTAA-ACCCAGTCGGACCGAGGGTTGT-G--G--GGACCGGTAACTGGA
* *
12965637 TCGACAGCACGCAGAGAGGTACCGGGTTGATCC-CTGGCTTGCACATTATGCCTCTTCGGTTGAC
438 TCGACAGCACGCAGAG-GGGACCGGGTTGATCCTC-GGCTTGCACATTATGCCTC-TCCG--G--
** * * *
12965701 CTCTCCAGTCGACCTCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCA
496 -----C---CGACCTCTCCGACCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
12965766 TACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGAACCGGACCGA
553 TACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGA
* ** * * * ** *
12965831 GGGTTGCGGTAGTAGGATCGACAGCATGCAGGATGCAGTGGGCCGATCCCCGACTTGCGCATTCT
618 GGGTTACGACAGCAGGATCGACAGCACGCAGGAGGCACCGAGCCGATCCCCGACTTGCGCATTCT
* * * * * * *
12965896 GCCTCTCCGATCGATTAAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
683 GCATCTCCGACCGACTAAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCA
* * ** * *
12965961 TTCCATATCTAAGCCCCAACCAGATTGAGGGTTGTGTAGTGGGACCAGTAGCATGTAGAGGGGGA
748 TTCCATATCTAAGCCCCAACCAGACTGAGGGTTGTGCAGCAGGACCAGCAGCATGCAGAGGGGGA
* * **
12966026 CCAGGCCGATCCCCGGCTTGTGCACTATGCCTCTTCGGGCGGCTCAGTGCCCGCACGCTC
813 CCAGGCCGATCCCCGGCTTGCGCACTATGCCTCTCCGGGCGGCTCAACGCCCGCACGCTC
* * * * *
12966086 GTTTCATGGGTTGACTTATGCATATGGAATTCATTCCCAATCTAAGATCGGA
1 ATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGA
12966138 TCGGACCAAG
Statistics
Matches: 785, Mismatches: 127, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
873 16 0.02
874 112 0.14
876 1 0.00
877 112 0.14
878 94 0.12
879 20 0.03
880 1 0.00
882 1 0.00
884 28 0.04
885 33 0.04
886 3 0.00
888 1 0.00
895 1 0.00
896 114 0.15
897 114 0.15
898 133 0.17
899 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (872 bp):
ATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGT
TACAGTAGCAGCATCAACAGCACACAGGGGGGACCGGGCTGACCCCTGACTTGCACATTCTGCCT
CTCTAACCGACTAAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCC
ATCTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACAGAACCGAAGGTTGCAGCTACAG
GACCAACAGCAGGATCAGTAGCACGCAGGGGGACCAGGTCGATCCCCAACTTGCGCATTCTGCCT
CTCCGACAGGCTAAACACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
ATGTCTAAACCCAGTCGGACCGAGGGTTGTGGGGACCGGTAACTGGATCGACAGCACGCAGAGGG
GACCGGGTTGATCCTCGGCTTGCACATTATGCCTCTCCGGCCGACCTCTCCGACCGGCTGAGCAC
CCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAG
TTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGA
GGCACCGAGCCGATCCCCGACTTGCGCATTCTGCATCTCCGACCGACTAAGCACCCACACGCCCA
TTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATATCTAAGCCCCAACCAGACTGAGGGTT
GTGCAGCAGGACCAGCAGCATGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCACTATGCCTC
TCCGGGCGGCTCAACGCCCGCACGCTC
Found at i:12966170 original size:18 final size:17
Alignment explanation
Indices: 12966147--12966185 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
12966137 ATCGGACCAA
12966147 GGGTTGCGACTGATCCCT
1 GGGTTGCGACTGAT-CCT
* *
12966165 GGGTTGTGGCTGATCCT
1 GGGTTGCGACTGATCCT
12966182 GGGT
1 GGGT
12966186 AGCAGGATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.08, C:0.21, G:0.41, T:0.31
Consensus pattern (17 bp):
GGGTTGCGACTGATCCT
Found at i:12966331 original size:26 final size:26
Alignment explanation
Indices: 12966295--12966345 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12966285 TGGCTTAGGC
*
12966295 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGAAGTTCATTCCCA-GTCTAAGG
12966321 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
12966346 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:12974460 original size:158 final size:158
Alignment explanation
Indices: 12974114--12974598 Score: 413
Period size: 158 Copynumber: 3.1 Consensus size: 158
12974104 TAAGAATACA
* * * * * * *
12974114 GAGTTCATTCCCAGTCGAAGATCAGACCGGACCGAAGGTTGCGATAGCAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGCTGCGACAGCAGGACCGACAGCATGCA
* * * * *
12974179 GAGGGGACTGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGTACGC
66 GAGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCACCCGCACGC
* *
12974244 TCATTTCGTGGGTTGGCTTAGGCATAGG
131 TCATTTCATGGGTTGACTTAGGCATAGG
* * * * * * **
12974272 GAGTTTATT-CCATGCCTAAG-CCCCAGTCGGACCGAGGGCTGTGGCAGTGGGACCGACAGCATG
1 GAGTTCATTCCCA-GTCTAAGATCCGA-TCGGACCGAGGGCTGCGACAGCAGGACCGACAGCATG
* * * **
12974335 CAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGG-CTGACTTAGTGCCCGCA
64 CAGAGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTC-GACTGAGCACCCGCA
*
12974399 CGCTCATTTCATGGGTTGACTTAGGCATATG
128 CGCTCATTTCATGGGTTGACTTAGGCATAGG
* * * * * *
12974430 GAGTTCATTCCCAGTCTAAGATCCGATCGGATCGAGGGTTGCGATAGCAGGATCAACAGC-TCGT
1 GAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGCTGCGACAGCAGGACCGACAGCAT-GC
* * * * * * *** * ** * *
12974494 AGGGGGGATCGAGCCGATCCTCAACTTGCGTATTCCACCTCTCCGGCCGGTTGA-CTGCCCACAC
65 AGAGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGACTGAGC-ACCCGCAC
* * * **
12974558 ACTCGTTTCATGGGTTGGCTTAGGCATACA
129 GCTCATTTCATGGGTTGACTTAGGCATAGG
12974588 GAGTTCATTCC
1 GAGTTCATTCC
12974599 ATCTCTAAGC
Statistics
Matches: 258, Mismatches: 61, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 244 0.95
159 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGCTGCGACAGCAGGACCGACAGCATGCA
GAGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCACCCGCACGC
TCATTTCATGGGTTGACTTAGGCATAGG
Found at i:12974817 original size:26 final size:26
Alignment explanation
Indices: 12974760--12974811 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12974750 CGTGGGTTAA
* *
12974760 CTTAGGCATACGGAGTTCATCCCCAG
1 CTTAAGCATACGAAGTTCATCCCCAG
*
12974786 CTTAAGCATACGAAGTTCATTCCCAG
1 CTTAAGCATACGAAGTTCATCCCCAG
12974812 TCTAAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAAGCATACGAAGTTCATCCCCAG
Found at i:12975288 original size:157 final size:157
Alignment explanation
Indices: 12974786--12975290 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 157
12974776 TCATCCCCAG
* * * *
12974786 CTTAAGCATACGAAGTTCATTCCCA-GTCTAAGATCGGATCAGACTGAAGGTTGCGGCAGCAGGA
1 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * * * *
12974850 TCTACAGCATGCAG-GGGGA-CCGGACTGGTCCCCGGCTTACGCATTCTGTCTCTCCAGCCGGCT
65 TCGACAGCACGCAGAGGGGATCAGGTC-GATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* *
12974913 GAGCACCCGCACGCCCATTTTGTGGGTTGA
129 GAGC-GCCGCACGCTCATTTTGTGGGTTGA
* * ** * * * **
12974943 CTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGTGGGA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCAGACCGAGGGTTGCGGCAGCAGGA
* * * * *
12975007 CCGACAGCACGCAGAGGGGGATCAGGTCGATCCTTGGCTTGTGCATTATGCCTCTTCGGCCGGCT
65 TCGACAGCACGCAGA-GGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* * * **
12975072 TAGTGCCCGTACGCTCATTTCATGGGTTGA
129 GAGCG-CCGCACGCTCATTTTGTGGGTTGA
* * * * *
12975102 CTTATGCATACAGAGTTCATTCC-TAGTCTAAGATCGGATCAAACCGAGGGCTGCGACAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGA
* * * *
12975166 TCGATAGCACGCAGAGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGACTG
65 TCGACAGCACGCAGAGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
* *
12975231 AGCGCCGCATGCTCATTTTGTGGGTTGG
130 AGCGCCGCACGCTCATTTTGTGGGTTGA
* *
12975259 TTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
12975291 CATACGGAGT
Statistics
Matches: 271, Mismatches: 68, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
156 5 0.02
157 100 0.37
158 47 0.17
159 113 0.42
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGAT
CGACAGCACGCAGAGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGA
GCGCCGCACGCTCATTTTGTGGGTTGA
Found at i:12975293 original size:26 final size:25
Alignment explanation
Indices: 12975264--12975315 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
12975254 GTTGGTTTAG
*
12975264 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
12975290 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
12975315 G
1 G
12975316 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:12975975 original size:26 final size:26
Alignment explanation
Indices: 12975939--12975991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12975929 GTTAACTTAG
12975939 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12975965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12975991 G
1 G
12975992 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12976317 original size:26 final size:26
Alignment explanation
Indices: 12976281--12976333 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12976271 GTTGGCTTAG
*
12976281 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12976307 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12976333 G
1 G
12976334 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12977092 original size:158 final size:158
Alignment explanation
Indices: 12976914--12977348 Score: 396
Period size: 158 Copynumber: 2.7 Consensus size: 158
12976904 GGTACGGGAC
* *
12976914 CGACAGCATGCAGAGTGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTC
1 CGACAGCACGCAGAGGGGGACCGGGCTGATCCCC-ACTTGCGCATTATGCCTCTTCGGCCGGCTC
** * * * * *
12976979 AACGCCTGCATGCTTGTTTCATGGGTTGACTTATGCATAGGGAGTTCATTCCCA-GTCTAA-AAT
65 AGTGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATA-GGAGTTCATTCCCATGTCTAAGAAC
**
12977042 CAGATCGGACTGAGGGTTG-CGATAGCAGCAT
129 CA-ATCGGACCAAGGGTTGTCGA-AGCAGCAT
* * * * * * *
12977073 CGACAGCACGTAG-GGGGGACCAGG-TCGATCCCCAGCTTGGGCATTCTGCCGCTCCGGCTGGCT
1 CGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCA-CTTGCGCATTATGCCTCTTCGGCCGGCT
* * ** * * * * **
12977136 GAGTGCCCGCACACCCGTTTCAAGTGTTGGCTTAGGCATAGGAATTCATT-CCATGTCTAAGCCC
64 CAGTGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATAGGAGTTCATTCCCATGTCTAAGAAC
* *
12977200 CAATCGGACCAAGGGTTGTGGAAGCAGGAT
129 CAATCGGACCAAGGGTTGTCGAAGCAGCAT
** * * * * *
12977230 CGGTAGCATGCAGAGGGGGACCGAGCTGATCCTCAACTTACGCATTATGCCTCTTCGGTCGGCTC
1 CGACAGCACGCAGAGGGGGACCGGGCTGATCC-CCACTTGCGCATTATGCCTCTTCGGCCGGCTC
* * *
12977295 AGTGCCCGCACGCTAATTTCATGGGTTGACTTGGGCATACGGAGTTCATCCCCA
65 AGTGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATA-GGAGTTCATTCCCA
12977349 ATTTAAGCAT
Statistics
Matches: 212, Mismatches: 54, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 47 0.22
158 137 0.65
159 22 0.10
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCACTTGCGCATTATGCCTCTTCGGCCGGCTCA
GTGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATAGGAGTTCATTCCCATGTCTAAGAACCA
ATCGGACCAAGGGTTGTCGAAGCAGCAT
Found at i:12977283 original size:316 final size:315
Alignment explanation
Indices: 12976737--12977348 Score: 753
Period size: 316 Copynumber: 1.9 Consensus size: 315
12976727 CGAACCAGAT
* **
12976737 TGAGGGTTACGACAGCAGGATCGACAGCACGTAGGGGGACCGGGCTGATCCCTGGCTAGCACATT
1 TGAGGGTTACGACAGCAGCATCGACAGCACGTAGGGGGACCGGGCTGATCCCCAGCTAGCACATT
* *** *
12976802 CTGCCTCTCCGACCGACTGAGCACCCACACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCGCTCCGACCGACTGAGCACCCACACACCCGTTTCAAGGGTTGGCTTAGGCATAGGGAATT
* * * * *
12976867 CATTCCATGTCTAAGCCCCAGCTGGATCTAGGGTAGTGGTACGGGACCGACAGCATGCAGAGTGG
131 CATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTAGTGGAACAGGACCGACAGCATGCAGAGGGG
* * * * * **
12976932 GACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCTGCATGCTTGTT
196 GACCGAGCTGATCCCCAACTTACGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACGCTAATT
* * *
12976997 TCATGGGTTGACTTATGCATAGGGAGTTCATTCCCAGTCTAAAATCAGATCGGAC
261 TCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAAATCAGATCGGAC
* * * * **
12977052 TGAGGGTTGCGATAGCAGCATCGACAGCACGTAGGGGGGACCAGG-TCGATCCCCAGCTTGGGCA
1 TGAGGGTTACGACAGCAGCATCGACAGCACGTA-GGGGGACCGGGCT-GATCCCCAGCTAGCACA
* * * ** * *
12977116 TTCTGCCGCTCCGGCTGGCTGAGTGCCCGCACACCCGTTTCAAGTGTTGGCTTAGGCATA-GGAA
64 TTCTGCCGCTCCGACCGACTGAGCACCCACACACCCGTTTCAAGGGTTGGCTTAGGCATAGGGAA
* * * **
12977180 TTCATTCCATGTCTAAGCCCCA-ATCGGACCAAGGGTTGTGGAAGCAGGATCGGTAGCATGCAGA
129 TTCATTCCATGTCTAAGCCCCAGCT-GGACCAAGGGTAGTGGAA-CAGGACCGACAGCATGCAGA
* * **
12977244 GGGGGACCGAGCTGATCCTCAACTTACGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCT
192 GGGGGACCGAGCTGATCCCCAACTTACGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACGCT
*
12977309 AATTTCATGGGTTGACTTGGGCATACGGAGTTCATCCCCA
257 AATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
12977349 ATTTAAGCAT
Statistics
Matches: 247, Mismatches: 46, Indels: 7
0.82 0.15 0.02
Matches are distributed among these distances:
314 1 0.00
315 70 0.28
316 176 0.71
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (315 bp):
TGAGGGTTACGACAGCAGCATCGACAGCACGTAGGGGGACCGGGCTGATCCCCAGCTAGCACATT
CTGCCGCTCCGACCGACTGAGCACCCACACACCCGTTTCAAGGGTTGGCTTAGGCATAGGGAATT
CATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTAGTGGAACAGGACCGACAGCATGCAGAGGGG
GACCGAGCTGATCCCCAACTTACGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACGCTAATT
TCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAAATCAGATCGGAC
Found at i:12977381 original size:26 final size:26
Alignment explanation
Indices: 12977329--12977381 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12977319 GTTGACTTGG
*
12977329 GCATACGGAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
12977355 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12977381 G
1 G
12977382 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12977807 original size:26 final size:26
Alignment explanation
Indices: 12977777--12977829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12977767 GTTGGCTTAG
12977777 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
12977803 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
12977829 G
1 G
12977830 ATTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:12978163 original size:26 final size:26
Alignment explanation
Indices: 12978127--12978176 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12978117 GACTTTGGCA
12978127 TACGAAGTTCATCCCCAGTCTAAGCT
1 TACGAAGTTCATCCCCAGTCTAAGCT
* *
12978153 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
12978177 ATCAAATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCT
Found at i:12978533 original size:159 final size:158
Alignment explanation
Indices: 12978153--12978547 Score: 385
Period size: 159 Copynumber: 2.5 Consensus size: 158
12978143 AGTCTAAGCT
* * * *
12978153 TACGGAGTTCATTCCCAGTCTAAGATCAAATTAGACC-AAGTGTTGCGACAGCAGGATAGGCAGC
1 TACGGAGTTCATTCCCAGTCTAAGATCACACTAGACCGAAG-GTTGCGACAGCAGGATTGACAGC
* * *
12978217 ACGTAGGGGGGACCAGGCCGATCCCCAGCTTGGGCATTCTGCCTCTCCGGTCGACTGAGCGCCGA
65 ACGCAGGAGGGACCAGGCCGATCCCCAGCTTGGGCATTCTGCCTCTCCGGTCGACTCAGCGCCGA
*
12978282 CACGCCTGTTTCATGGGTTGGCTTAGGCA
130 CACGCCTGTTTCATGGGTTGACTTAGGCA
* * * * * *
12978311 TACGGAGTTCATT-TCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGACAGC-GAGATCT-AC
1 TACGGAGTTCATTCCCA-GTCTAAGATCACA-CTAGACCGAAGGTTGCGACAGCAG-GAT-TGAC
* * ** * **
12978372 AGCACGCAGAGAGGGATCGGGCCGATCCCTGGCTTGTGCATTAC-GCCTCTCCGGTCGGTTCAGC
62 AGCACGCAG-GAGGGACCAGGCCGATCCCCAGCTTGGGCATT-CTGCCTCTCCGGTCGACTCAGC
*
12978436 GCCCG-CACG-CTCGTTTCATGGTTTGACTTAGGCA
125 G-CCGACACGCCT-GTTTCATGGGTTGACTTAGGCA
* * * * * *
12978470 TACGGACTTCATTCCCAGTCTAAGATCGCACCAGACCGATGGTTACGGCAGCAGGATTGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCACACTAGACCGAAGGTTGCGACAGCAGGATTGACAGCA
12978535 CGCAAGG-GGGACC
66 CGC-AGGAGGGACC
12978548 GAGTCGATCC
Statistics
Matches: 190, Mismatches: 33, Indels: 28
0.76 0.13 0.11
Matches are distributed among these distances:
157 5 0.03
158 55 0.29
159 118 0.62
160 12 0.06
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
TACGGAGTTCATTCCCAGTCTAAGATCACACTAGACCGAAGGTTGCGACAGCAGGATTGACAGCA
CGCAGGAGGGACCAGGCCGATCCCCAGCTTGGGCATTCTGCCTCTCCGGTCGACTCAGCGCCGAC
ACGCCTGTTTCATGGGTTGACTTAGGCA
Found at i:12979015 original size:26 final size:26
Alignment explanation
Indices: 12978985--12979037 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12978975 GTTGACTTAG
12978985 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
12979011 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12979037 G
1 G
12979038 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12979362 original size:26 final size:26
Alignment explanation
Indices: 12979328--12979380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12979318 GTTGACTTAG
12979328 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12979354 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12979380 G
1 G
12979381 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12979377 original size:343 final size:341
Alignment explanation
Indices: 12978952--12979703 Score: 908
Period size: 343 Copynumber: 2.2 Consensus size: 341
12978942 ACCGACTGAG
*
12978952 CGCCCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATAC
1 CGCCC-GTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT-C
* **
12979017 GGAGTTCATTCCCAGTCTAAGATC-GAACCAGA-CTGAGGGTTACGACAGCAGGATTGGTAGCAT
64 GGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATC-GAGGGTTACGACAGCAGGATCGACAGCAT
* * * * * * **
12979080 GTAGGGGGGATCGGGCCAATCCTCAG-CTTACACATTCTGCTTCTCCGGCCGGCTGAG-TGCTCG
127 GGAGGGCGGACCGAGCCAATCC-CAGACTTACACATTCTGCCTCTCCGGCCGACTGAGCACCT-G
*
12979143 CATGCCCGTTTCATGGGTTAGCTTACG-CATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGG
190 CATGCCCGTTTCATGGGTTAGCTTA-GTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GG
** * * * * * *
12979206 ACCGAGGGTTGTGGTAGTGGGACTGGCAGCATGTAGAGAA-GGACCGGGTCGATCCTCGGCTTAC
253 ACCGAGGGTTAAGGCAGCGGGACTGGCAGCATGCA-A-AAGGGACCGGGCCAATCCCCGGCTTAC
* *
12979270 GTATTTTGCCTCTTCGGTCGGCTCAA
316 GCATTATGCCTCTTCGGTCGGCTCAA
*
12979296 CGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATGCG
1 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT-CG
** * * *
12979361 GAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACCGTAGGATCGACAGCATGGA
65 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGATCGACAGCATGGA
* * * *
12979426 GGGCGGACCGAGCCGATCCCCGACTTACACATTCTGCCTCTTCGGTCGACTGAGCACCTGCATGC
130 GGGCGGACCGAGCCAATCCCAGACTTACACATTCTGCCTCTCCGGCCGACTGAGCACCTGCATGC
* * * *
12979491 CCGTTTCGTGGGTTGGCTTAGTCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCTGGATCGAGG
195 CCGTTTCATGGGTTAGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGG
*
12979556 GTTAAGGCAGCGGGACTGGCAGCATGCAAAATGGGACCGGGCCAATCCCCGGCTTGCGCATTATG
260 GTTAAGGCAGCGGGACTGGCAGCATGCAAAA-GGGACCGGGCCAATCCCCGGCTTACGCATTATG
12979621 CCTCTTCGGTCGGCTCAA
324 CCTCTTCGGTCGGCTCAA
* * ** * * ** * *
12979639 CGCCCGCATGCTCGTTTTGTGTGTGGACTTATTCATACGAAGTTCATTCCCAGTCTAA-CATCGG
1 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCGG
12979703 A
66 A
12979704 CCAAATCGAG
Statistics
Matches: 350, Mismatches: 50, Indels: 19
0.84 0.12 0.05
Matches are distributed among these distances:
341 6 0.02
342 7 0.02
343 327 0.93
344 10 0.03
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (341 bp):
CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCGG
AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGATCGACAGCATGGAG
GGCGGACCGAGCCAATCCCAGACTTACACATTCTGCCTCTCCGGCCGACTGAGCACCTGCATGCC
CGTTTCATGGGTTAGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
TTAAGGCAGCGGGACTGGCAGCATGCAAAAGGGACCGGGCCAATCCCCGGCTTACGCATTATGCC
TCTTCGGTCGGCTCAA
Found at i:12979695 original size:159 final size:157
Alignment explanation
Indices: 12979430--12979939 Score: 458
Period size: 157 Copynumber: 3.2 Consensus size: 157
12979420 CATGGAGGGC
* * * * * * * * * *
12979430 GGACCGAGCCGATCCCCGACTTACACATTCTGCCTCTTCGGTCGACTGAGCACCTGCATGCCCGT
1 GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAACGCCCGCATGCTCGT
* * * * * * ***
12979495 TTCGTGGGTTGG-CTTAGTCATAGGGAGTTCATTCTATGTCTAAGCCCCAG-CTGGATCGAGGGT
66 TTTGTGTG-TGGACTTATTCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCAAATCGAGGGT
* * *
12979558 TAAGGCAGCGGGA-CTG-GCAGCATGCAAAATG
129 T-AGGCAGCAGGATC-GAG-AGCATAC-AAAGG
* *
12979589 GGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAACGCCCGCATGCTCGT
1 GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAACGCCCGCATGCTCGT
* * *
12979654 TTTGTGTGTGGACTTATTCATACGAAGTTCATTCCCAGTCTAA-CATCGGACCAAATCGAGGGTT
66 TTTGTGTGTGGACTTATTCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCAAATCGAGGGTT
* * **
12979718 GGGCAGTAGGATCGAGAGCATACAGGGG
130 AGGCAGCAGGATCGAGAGCATACAAAGG
* ** * ** * * *
12979746 GGACCAGGTTGATCCCCGGCTTGCGTATTCTGCCTCTTAAGCCGGCTCAACGCCCACACGCTCGT
1 GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAACGCCCGCATGCTCGT
* *
12979811 TTTGTGTGTGGACTTATGCATACGGAGTTCATTACCAGTCTAAG-ATCAGACCAAATCGAGGGTT
66 TTTGTGTGTGGACTTATTCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCAAATCGAGGGTT
* *
12979875 -GGCCAGTAGGATCGAGAGCATACAAGGG
130 AGG-CAGCAGGATCGAGAGCATACAAAGG
* ** *
12979903 GGACCAGGTTGATCCCCGACTTGCGCATTCTGCCTCT
1 GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
12979940 CCAGCTGACT
Statistics
Matches: 295, Mismatches: 49, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
156 2 0.01
157 174 0.59
158 21 0.07
159 96 0.33
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAACGCCCGCATGCTCGT
TTTGTGTGTGGACTTATTCATACGGAGTTCATTCCAGTCTAAGCACCAGACCAAATCGAGGGTTA
GGCAGCAGGATCGAGAGCATACAAAGG
Found at i:12979800 original size:157 final size:157
Alignment explanation
Indices: 12979600--12979939 Score: 545
Period size: 157 Copynumber: 2.2 Consensus size: 157
12979590 GACCGGGCCA
* ** * * *
12979600 ATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAACGCCCGCATGCTCGTTTTGTGTGTGG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTAAGCCGGCTCAACGCCCACACGCTCGTTTTGTGTGTGG
* * * *
12979665 ACTTATTCATACGAAGTTCATTCCCAGTCTAACATCGGACCAAATCGAGGGTTGGGCAGTAGGAT
66 ACTTATGCATACGAAGTTCATTACCAGTCTAACATCAGACCAAATCGAGGGTTGGCCAGTAGGAT
*
12979730 CGAGAGCATACAGGGGGGACCAGGTTG
131 CGAGAGCATACAAGGGGGACCAGGTTG
*
12979757 ATCCCCGGCTTGCGTATTCTGCCTCTTAAGCCGGCTCAACGCCCACACGCTCGTTTTGTGTGTGG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTAAGCCGGCTCAACGCCCACACGCTCGTTTTGTGTGTGG
* *
12979822 ACTTATGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAAATCGAGGGTTGGCCAGTAGGAT
66 ACTTATGCATACGAAGTTCATTACCAGTCTAACATCAGACCAAATCGAGGGTTGGCCAGTAGGAT
12979887 CGAGAGCATACAAGGGGGACCAGGTTG
131 CGAGAGCATACAAGGGGGACCAGGTTG
*
12979914 ATCCCCGACTTGCGCATTCTGCCTCT
1 ATCCCCGGCTTGCGCATTCTGCCTCT
12979940 CCAGCTGACT
Statistics
Matches: 167, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
157 167 1.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (157 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTTAAGCCGGCTCAACGCCCACACGCTCGTTTTGTGTGTGG
ACTTATGCATACGAAGTTCATTACCAGTCTAACATCAGACCAAATCGAGGGTTGGCCAGTAGGAT
CGAGAGCATACAAGGGGGACCAGGTTG
Found at i:12979969 original size:157 final size:156
Alignment explanation
Indices: 12979600--12980012 Score: 524
Period size: 157 Copynumber: 2.6 Consensus size: 156
12979590 GACCGGGCCA
* * * * *
12979600 ATCCCCGGCTTGCGCATTATGCCTCTTC-GGTCGGCTCAACGCCCGCATGCTCGTTTTGTGTGTG
1 ATCCCCGACTTGCGCATTCTGCCTC-TCAAGCCGACTCAACGCCCGCATGCTCGTTTTGTGTGTG
* * * *
12979664 GACTTATTCATACGAAGTTCATTCCCAGTCTAACATCGGACCAAATCGAGGGTTGGGCAGTAGGA
65 GACTTATGCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAAATCGAGGGTTGGCCAGTAGGA
*
12979729 TCGAGAGCATACAGGGGGGACCAGGTTG
129 TCGAGAGCATACAAGGGGGACCAGGTTG
* * * * * *
12979757 ATCCCCGGCTTGCGTATTCTGCCTCTTAAGCCGGCTCAACGCCCACACGCTCGTTTTGTGTGTGG
1 ATCCCCGACTTGCGCATTCTGCCTCTCAAGCCGACTCAACGCCCGCATGCTCGTTTTGTGTGTGG
*
12979822 ACTTATGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAAATCGAGGGTTGGCCAGTAGGAT
66 ACTTATGCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAAATCGAGGGTTGGCCAGTAGGAT
12979887 CGAGAGCATACAAGGGGGACCAGGTTG
130 CGAGAGCATACAAGGGGGACCAGGTTG
* * * ** * * * *
12979914 ATCCCCGACTTGCGCATTCTGCCTCTCCAGCTGACTGAGTGCTCGCATGCCCGTTTCGTGGGTTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCAAGCCGACTCAACGCCCGCATGCTCGTTTTGTGTG-TG
*
12979979 G-CTTAGGCATACGAAGTTCATTCCATGTCTAAGA
65 GACTTATGCATACGAAGTTCATTCCA-GTCTAAGA
12980013 CCCAGCGGGA
Statistics
Matches: 222, Mismatches: 31, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
156 4 0.02
157 215 0.97
158 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (156 bp):
ATCCCCGACTTGCGCATTCTGCCTCTCAAGCCGACTCAACGCCCGCATGCTCGTTTTGTGTGTGG
ACTTATGCATACGAAGTTCATTCCAGTCTAAGATCAGACCAAATCGAGGGTTGGCCAGTAGGATC
GAGAGCATACAAGGGGGACCAGGTTG
Found at i:12980199 original size:26 final size:26
Alignment explanation
Indices: 12980169--12980221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12980159 GTTGACTTAG
12980169 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12980195 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12980221 G
1 G
12980222 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12980549 original size:26 final size:26
Alignment explanation
Indices: 12980513--12980564 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12980503 TTGACTTAGC
*
12980513 CATACGGAGTTCA-TCCTCAGTCTAAG
1 CATACAGAGTTCATTCC-CAGTCTAAG
12980539 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
12980565 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:12980684 original size:343 final size:343
Alignment explanation
Indices: 12980156--12980781 Score: 925
Period size: 343 Copynumber: 1.8 Consensus size: 343
12980146 GCTCGTTTCA
* *
12980156 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
12980221 GATCAAACCAGACCGATGGTTACAGCAGCAAGATCGGCAGTCTGCAGGGGGGACCGGATCGATCT
66 GATCAAACCAGACCGAGGGTTACAGCAGCAAGATCGGCAGTCCGAAGGGCGAACCGGATCGATCC
* * * * *
12980286 CTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTTAGCGCCCGCACGCCAGTTTCATGGGTTGGCTT
131 CCGGCTTACGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCACGCCAGTTTCATGGGTTGGCTT
*
12980351 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGACCGG
196 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACCGG
12980416 CAGCATATAGAGGGGGACCGGGCCGATCCTCGACGTGTGCATTATGCCTTTTCGGATAGCTTAGC
261 CAGCATATAGAGGGGGACCGGGCCGATCCTCGACGTGTGCATTATGCCTTTTCGGATAGCTTAGC
12980481 GCCCGCACGCTTGCTCCG
326 GCCCGCACGCTTGCTCCG
* *
12980499 TGGGTTGACTTAGCCATACGGAGTTCATCCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* ** * *
12980564 GATCAGACTGGACCGAGGGTTGC-GACAGCAGGATCGGCAG-CACGAAGGGCGAACC-GAGTCGA
66 GATCAAACCAGACCGAGGGTTACAG-CAGCAAGATCGGCAGTC-CGAAGGGCGAACCGGA-TCGA
* * *
12980626 TCCCCGGCTTATGCATTCTACCTTTCCAGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGG
128 TCCCCGGCTTACGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCACGCCAGTTTCATGGGTTGG
* ** * * *
12980691 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATTGAGGGTTGTGGTAGTGGGAC
193 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGAC
*
12980756 CGGCAGCATGTAGAGGGGGACCGGGC
258 CGGCAGCATATAGAGGGGGACCGGGC
12980782 TAATCCCCGG
Statistics
Matches: 249, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
342 4 0.02
343 245 0.98
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (343 bp):
TGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
GATCAAACCAGACCGAGGGTTACAGCAGCAAGATCGGCAGTCCGAAGGGCGAACCGGATCGATCC
CCGGCTTACGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCACGCCAGTTTCATGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACCGG
CAGCATATAGAGGGGGACCGGGCCGATCCTCGACGTGTGCATTATGCCTTTTCGGATAGCTTAGC
GCCCGCACGCTTGCTCCG
Found at i:12981005 original size:159 final size:159
Alignment explanation
Indices: 12980658--12981041 Score: 411
Period size: 160 Copynumber: 2.4 Consensus size: 159
12980648 TTTCCAGTCG
* * *
12980658 GCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* ** * *** * * *
12980723 CCCTAGCCAGATTGAGGGTTGTGGTAGTGGGACCGGCAGCATGTAGAGGGGGACCGGGCTAATCC
66 ACCTAGCCAGACCGAGGGTTGTGGCAGCAAGACCGACAGCATATAGAGGGGGACCGGACTAATCC
* *
12980788 CCGGACTTGCGCATTGTGCCTCTTCGATC
131 CCAGACTTGCGCATTGTGCCTCTTCGACC
* ** * * ** *
12980817 GACTCAGCGCCCGCACATTCATTTTGTGGGTTAACTTATGCATACGGAGTTCATTCCCA-GTCTA
1 G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* *
12980881 AGATC-AGACC-GAACCGAGGGTTGTGGCAGCAAGATCGACAGCATATAG-GGGGGACCAGGACT
64 AGACCTAG-CCAG-ACCGAGGGTTGTGGCAGCAAGACCGACAGCATATAGAGGGGGACC-GGACT
* * *
12980943 GATCCCTAG-CTTGCGCATTCG-GCCTCTTTGACC
126 AATCCCCAGACTTGCGCATT-GTGCCTCTTCGACC
12980976 TGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 -GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12981041 G
65 G
12981042 CATACGGAGT
Statistics
Matches: 181, Mismatches: 36, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
158 3 0.02
159 84 0.46
160 91 0.50
161 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
ACCTAGCCAGACCGAGGGTTGTGGCAGCAAGACCGACAGCATATAGAGGGGGACCGGACTAATCC
CCAGACTTGCGCATTGTGCCTCTTCGACC
Found at i:12981051 original size:26 final size:26
Alignment explanation
Indices: 12981015--12981067 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12981005 GTTGGCTTAG
12981015 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12981041 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12981067 G
1 G
12981068 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12981248 original size:503 final size:498
Alignment explanation
Indices: 12980268--12981602 Score: 1393
Period size: 503 Copynumber: 2.7 Consensus size: 498
12980258 CAGTCTGCAG
* * * * * * * *
12980268 GGGGGACCGGATCGATCTCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTTAGCGCCCGCACGC-
1 GGGGGACCGGGTCAATCCCAGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCAC-CT
** ** * * ** *
12980332 CAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGA
65 CA-TTTTGTGGGTTAACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGA
* * * * *
12980395 GGGTTGTGGCAGCGAGACCGGCAGCATATAGAGGGGGACC-GGGCCGAT-CCTCGACGTGTGCAT
127 GGGTTGTGGCAGC-AGATCGACAGCATATAG-GGGGGACCAGGGCTGATCCCTAG-CTTGTGCAT
* * * * * *
12980458 TATGCCT-TTTCGGA-TAGCTTAGCGCCCGCACGCTTGCTCCGTGGGTTGACTTAGCCATACGGA
189 TCTGCCTCTTT--GACT-GCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGA
* *
12980521 GTTCATCCTCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
251 GTTCATTC-CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTT
* * *
12980585 GCGACAGCAGGATCGGCAGCACGAAGGGCGAACCGAGTCGATCCCCGGCTTATGCATTCTACCTT
314 GCGACAGCAGGATCGACAGCACGAAGGGCGAACCGAGTCGATCCCCGGCTTACGCATTCTACCTC
* * * *
12980650 TCCAGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
379 TCCAGTCGGCTGAGCACACGCACGCCCGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCA
* ** * * * ***
12980715 TGTCTAAGCCCTAGCCAGATTGAGGGTTGTGGTAGTGGGACCGGCAGCATGTAGA
444 TGTCTAAGCCCCAGCCAGACCGACGGTTGTGGTAGCGGGACCGACAGCACACAGA
* * *
12980770 GGGGGACCGGG-CTAATCCCCGGACTTGCGCATTGTGCCTCTTCGATCGACTCAGCGCCCGCACA
1 GGGGGACCGGGTC-AATCCCAGG-CTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCAC-
*
12980834 TTCATTTTGTGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAG
63 CTCATTTTGTGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAG
* * *
12980899 GGTTGTGGCAGCAAGATCGACAGCATATAGGGGGGACCAGGACTGATCCCTAGCTTGCGCATTCG
128 GGTTGTGGCAGC-AGATCGACAGCATATAGGGGGGACCAGGGCTGATCCCTAGCTTGTGCATTCT
* *
12980964 GCCTCTTTGACCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
192 GCCTCTTTGA-CTGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
*
12981029 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTGCGAC
256 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACT-GGACCGAGGGTTGCGAC
* * * *
12981093 AGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCC-G
319 AGCAGGATCGACAGCACGAAGGGCGAACCGAGTCGATCCCCGGCTTACGCATTCTACCTCTCCAG
* * * * *
12981157 ATTGGTTGAGCACACGCACGCCTGTTTTATGGGTTGGCTGAGGTATACGGAGTTCATTCCATGTC
384 -TCGGCTGAGCACACGCACGCCCGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTC
* *
12981222 TAAGCCCCAGCCAGACCGACGGTTGTGGTAGCGGGATCGACAGCACACAGT
448 TAAGCCCCAGCCAGACCGACGGTTGTGGTAGCGGGACCGACAGCACACAGA
* * * * * * * * *
12981273 GGGGGATCGGGTCGATCCTAGGCTTGTGCATTACGTCTCTTCGACCGGCTCAGCACTCGCACGCT
1 GGGGGACCGGGTCAATCCCAGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCAC-CT
* * *
12981338 CGTTTTGTGGGTTAACTTACT-CATACGAAGTTCATTCCCAGTCTAAGATCAGACC-AGACTGAG
65 CATTTTGTGGGTTAACTTA-TGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAG
* * * *** * ** *
12981401 GGTTGCGGCAACAGAATCTACAGCACGCAGGGGGGA-CAGGGCTGGTCCCCGGCTTATGCATTCT
128 GGTTGTGGCAGCAG-ATCGACAGCATATAGGGGGGACCAGGGCTGATCCCTAGCTTGTGCATTCT
* * * * ** * * * *
12981465 GCCTCTCTGATCGGCTAAGCACCTGCACATTTGTTTCATGGGTTGGCTCAGGCACACAGAGTTCA
192 GCCTCTTTGA-CTGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
12981530 TTCCATGTTTAAGCGTGCGGAGTTCATTCCCAGTCAAAGATCGAACTGGATCGAGGGTTGCGGCA
256 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACTGGACCGAGGGTTGCGACA
12981595 GCAGGATC
320 GCAGGATC
12981603 AGTAGCAGGA
Statistics
Matches: 697, Mismatches: 117, Indels: 39
0.82 0.14 0.05
Matches are distributed among these distances:
500 1 0.00
501 139 0.20
502 150 0.22
503 393 0.56
504 14 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (498 bp):
GGGGGACCGGGTCAATCCCAGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACCTC
ATTTTGTGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGT
TGTGGCAGCAGATCGACAGCATATAGGGGGGACCAGGGCTGATCCCTAGCTTGTGCATTCTGCCT
CTTTGACTGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTGCGACAGCAGGA
TCGACAGCACGAAGGGCGAACCGAGTCGATCCCCGGCTTACGCATTCTACCTCTCCAGTCGGCTG
AGCACACGCACGCCCGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGCCAGACCGACGGTTGTGGTAGCGGGACCGACAGCACACAGA
Found at i:12981395 original size:159 final size:159
Alignment explanation
Indices: 12981042--12981486 Score: 400
Period size: 159 Copynumber: 2.8 Consensus size: 159
12981032 CATGTCTAAG
* *
12981042 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAG
* * ** * *
12981107 CACGCAGGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATTGGTTGAGCACAC
66 CACACAGGGGGGACCGAGTCGATCCCAGGCTTACGCATTCTGCCTCTCCGACCGGCTCAGCACAC
** *
12981172 GCACGCCTGTTTTATGGGTTGGCTGAGGT
131 GCACGCCTGTTTTATGGGTTAACTGAGCT
** * * ** *
12981201 -ATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGACGGTTGTGGTAGCGGGATCGAC
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGAC
* * * ** * *
12981263 AGCACACAGTGGGGGATCGGGTCGATCCTAGGCTTGTGCATTAC-GTCTCTTCGACCGGCTCAGC
64 AGCACACAG-GGGGGACCGAGTCGATCCCAGGCTTACGCATT-CTGCCTCTCCGACCGGCTCAGC
* * *
12981327 ACTCGCACG-CTCGTTTTGTGGGTTAACTTA-CT
127 ACACGCACGCCT-GTTTTATGGGTTAACTGAGCT
* * * * * *
12981359 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAGAATCTACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAG
* * * * * * * * *
12981424 CACGCAGGGGGGACAG-GGCTGGTCCCCGGCTTATGCATTCTGCCTCTCTGATCGGCTAAGCAC
66 CACACAGGGGGGACCGAGTC-GATCCCAGGCTTACGCATTCTGCCTCTCCGACCGGCTCAGCAC
12981487 CTGCACATTT
Statistics
Matches: 224, Mismatches: 52, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.03
158 99 0.44
159 115 0.51
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAG
CACACAGGGGGGACCGAGTCGATCCCAGGCTTACGCATTCTGCCTCTCCGACCGGCTCAGCACAC
GCACGCCTGTTTTATGGGTTAACTGAGCT
Found at i:12982556 original size:508 final size:508
Alignment explanation
Indices: 12981581--12982598 Score: 1292
Period size: 508 Copynumber: 2.0 Consensus size: 508
12981571 CGAACTGGAT
* * * *
12981581 CGAGGGTTGCGGCAGCAGGATCAGTAGCAGGATTGACAACACGCAAGGGGGATCGGACCGATCCC
1 CGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGACAACACGCAAGGGGGATCGGACCGATCCC
12981646 CGACTTGCGCATTCTGCCTCTCCAACCAGCTGAGCACCCGCACGCACGTTTCATGGGTTGACTTA
66 CGACTTGCGCATTCTGCCTCTCCAACCAGCTGAGCACCCGCACGCACGTTTCATGGGTTGACTTA
* * * * *
12981711 GGCATATGGAGTTCATCCCCAGCCTAAGCATACAGAGTTCATTCCCAGTTTAAGATTGAAACAGA
131 GGCATACGGAGTTCATCCCCAACCTAAGCATACAGAGGTCATTCCCAGTCTAAGATAGAAACAGA
* ** ** * * *
12981776 CCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGTGCA
196 CCGAGGGTTGCAGCAACAGGATCGACAGCACACAGGAAGGATCAGGCCGATCCTCAGCTTGCGCA
* * *
12981841 TTCTACCTCTCCGGCTGACTGAGCGCCCGCACATCCATTTCATGGGTTGGCTTAGCCATAGGGAG
261 TTCTACCTCTCAGGCTGACTAAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGCCATAGGGAG
* *
12981906 TTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTCTGGCAGCGGGACCGACAGCACGCAAAG
326 TTCATTCCATGTATAAGCCCCAGCTGGACCGAGGGTTCTGGCAGCGGGACCGACAGCACACAAAG
* ** *
12981971 GGGGCTAGAATCGATCCCTGACTTACGCATTATGCCTCTCCGACCGGCTCAGTGCCCGTACGCTC
391 GGGGATAGAATCGATCCCTGACTTACGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCTC
* *
12982036 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
456 GTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAAAC
* * **
12982089 CGAGGGTTGCGGTAGCAGGACCAGCAACAGGATCGACAGCACGC-AGGAGGGATCGGGTCGATCC
1 CGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGACAACACGCAAGG-GGGATCGGACCGATCC
* * *** * * ** * *
12982153 CCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGGGTGCCCGCACGCTCGTTTCGTGGGTTGACTT
65 CCGACTTGCGCATTCTGCCTCTCCAACCAGCTGAGCACCCGCACGCACGTTTCATGGGTTGACTT
* * * * * *
12982218 AGGTATACGGAGTTCATCCCCAATCTAAGCGTGC-GAAGGTCATTCTCAGTCTAAGATCAG-ACC
130 AGGCATACGGAGTTCATCCCCAACCTAAGCATACAG-AGGTCATTCCCAGTCTAAGAT-AGAAAC
* **
12982281 GGACCGAGGGTTGC-GACAACAGGATCGGTAGCACACAGGAAGGATCAGGCCGATCCTCAGCTTG
193 AGACCGAGGGTTGCAG-CAACAGGATCGACAGCACACAGGAAGGATCAGGCCGATCCTCAGCTTG
* * * * *
12982345 CGCATTCTGCCTCTTCAGTC-GGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA
257 CGCATTCTACCTC-TCAGGCTGACTAAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGCCATA
* * * *
12982409 GGGAGTTCATTCCATGTATAAGCCCCAGTTGGATCGAGGGTTGTGGCAGCGGGACCGATAGCACA
321 GGGAGTTCATTCCATGTATAAGCCCCAGCTGGACCGAGGGTTCTGGCAGCGGGACCGACAGCACA
* * ** * * * *
12982474 TAGAA-GGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAACGCCCGC
386 CA-AAGGGGGATAGAATCGATCCCTGACTTACGCATTATGCCTCTCCGACCGGCTCAACGCCCGC
* * *
12982538 ACGCTTGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATCAAAC
450 ACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAAAC
12982597 CG
1 CG
12982599 GATCGAGGGT
Statistics
Matches: 432, Mismatches: 72, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
507 5 0.01
508 420 0.97
509 7 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (508 bp):
CGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGACAACACGCAAGGGGGATCGGACCGATCCC
CGACTTGCGCATTCTGCCTCTCCAACCAGCTGAGCACCCGCACGCACGTTTCATGGGTTGACTTA
GGCATACGGAGTTCATCCCCAACCTAAGCATACAGAGGTCATTCCCAGTCTAAGATAGAAACAGA
CCGAGGGTTGCAGCAACAGGATCGACAGCACACAGGAAGGATCAGGCCGATCCTCAGCTTGCGCA
TTCTACCTCTCAGGCTGACTAAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGCCATAGGGAG
TTCATTCCATGTATAAGCCCCAGCTGGACCGAGGGTTCTGGCAGCGGGACCGACAGCACACAAAG
GGGGATAGAATCGATCCCTGACTTACGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAAAC
Found at i:12982859 original size:11 final size:11
Alignment explanation
Indices: 12982843--12982868 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
12982833 CCCTGGGCAC
12982843 CATCGTCGGAG
1 CATCGTCGGAG
12982854 CATCGTCGGAG
1 CATCGTCGGAG
12982865 CATC
1 CATC
12982869 ACCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:12983493 original size:26 final size:26
Alignment explanation
Indices: 12983457--12983507 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12983447 GTTGAATTAG
*
12983457 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12983483 GCATACAGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
12983508 TGATCAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12984717 original size:159 final size:157
Alignment explanation
Indices: 12984361--12984855 Score: 401
Period size: 159 Copynumber: 3.1 Consensus size: 157
12984351 AAGCATACAA
* ** * * *
12984361 AGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGTAGGATTGACAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGAACTGACAGCATGCAG
* * *
12984426 GAGGGACTGGGCTGATCCCCGACTTGCGTATTTTGCCTCTCCGGTCGGCTAAGTGCCCACACGCC
66 GAGGGACCGGGCTGATCCCCGACTTGCG-ATTATGCCTCTCCGGTCGGCTAACTGCCCACACGCC
* * * *
12984491 CATTTCGTGGGTTGGCTTAGGCATAGGG
130 CATTCCATGGGTTGACTTAGGCATACGG
** * *
12984519 AGTTCATT-CCATGTCTAAGCCCCA-ACTGGACTGAGGGTTGTGGCAGCAGAACTGGCAGCATGC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGCAGAACTGACAGCATGC
* * * * *
12984582 TGAGG-GGGACCGGGCTGATCCTCGACTTATGCG-TTATGCCTCTTCGG-CAGGCTCACTGCTCG
64 --AGGAGGGACCGGGCTGATCCCCGAC-T-TGCGATTATGCCTCTCCGGTC-GGCTAACTGCCCA
* * *
12984644 CACGCTCGTTCCATGGGTTGACTTATGCATACGG
124 CACGCCCATTCCATGGGTTGACTTAGGCATACGG
** * * **
12984678 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCT-GCAGCAGGATTGACAGCACACA
1 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG-TGGCAGCAGAACTGACAGCATGCA
* * * * * * ** * *
12984742 GGAAGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCATCTGAGC-GCCCGCAC
65 GG-AGGGACCGGGCTGATCCCCGACTTGCG-ATTATGCCTCTCCGGTCGGCT-AACTGCCCACAC
* * * * * *
12984806 GCTCGTTTCATGGTTTGGCTTAGGCATAGGG
127 GCCCATTCCATGGGTTGACTTAGGCATACGG
*
12984837 AGTTCATTCCCTGTCTAAG
1 AGTTCATTCCCAGTCTAAG
12984856 CATACGAAGT
Statistics
Matches: 268, Mismatches: 53, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
157 10 0.04
158 50 0.19
159 194 0.72
160 10 0.04
161 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGAACTGACAGCATGCAG
GAGGGACCGGGCTGATCCCCGACTTGCGATTATGCCTCTCCGGTCGGCTAACTGCCCACACGCCC
ATTCCATGGGTTGACTTAGGCATACGG
Found at i:12991755 original size:26 final size:26
Alignment explanation
Indices: 12991719--12991770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12991709 TTGGCTTAGG
12991719 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
12991745 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
12991771 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:12992134 original size:26 final size:26
Alignment explanation
Indices: 12992098--12992150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12992088 GTTGACTTAG
12992098 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
* *
12992124 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
12992150 G
1 G
12992151 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:12993103 original size:26 final size:26
Alignment explanation
Indices: 12993067--12993118 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12993057 TTGACTTAGT
* *
12993067 CATACGGAGTTTATCCCCAGTCTAAG
1 CATACGGAGTTCATCCACAGTCTAAG
*
12993093 CATACGGAGTTCATTCACAGTCTAAG
1 CATACGGAGTTCATCCACAGTCTAAG
12993119 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCACAGTCTAAG
Found at i:12993426 original size:152 final size:155
Alignment explanation
Indices: 12993092--12993588 Score: 375
Period size: 152 Copynumber: 3.2 Consensus size: 155
12993082 CCCAGTCTAA
* *
12993092 GCATACGGAGTTCATTCACAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGACCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
12993157 GCACGCAGGGGGGACCGAGCCAATCCCCAGCTTGTGCATTGTGCCTCTTCGATCGGCCGAGCGCC
65 GCACACAGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTTC-ATC-GCAGAGCACC
* *
12993222 CGCACGTCCATTTCGTGGGTTGGCTTAG
128 CGCACGTCCATTTCGTCGGTTGACTTAG
* * * * ** *
12993250 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGTAGTGGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* *
12993314 AGCACACAGAGGGGGACC-AGGCCGATCCCCGGCTTGCGCATTATG-C-C-TC-TC-CAGAGCAC
64 AGCACACAG-GGGGGACCGA-GCCAATCCCCAGCTTGCGCATTATGCCTCTTCATCGCAGAGCAC
* * * *
12993373 CCGTACGTTCGTTTCGTCGGTTGACTTAT
127 CCGCACGTCCATTTCGTCGGTTGACTTAG
* * * ** ** *
12993402 GCATACGGAGTTCATTCCTAGTCTATGATCGGATTGGACTGAGGGTTGCAACAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGACCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
*** * * ** ** * * *
12993467 GCATGTATGGGGGGACCAAACTGATCCCTTGCTAGCGCATTCTGCCT-TTC-TAGCCGATTGAGC
65 GCACACA-GGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTTCATCG-C-A--GAGC
* * * *
12993530 ACCCGTACG-CTCGTTTCGTGGGTTGGCTTAG
125 ACCCGCACGTC-CATTTCGTCGGTTGACTTAG
12993561 GCATACGGAGTTCATTCCTAGTCTAAGA
1 GCATACGGAGTTCATTCC-AGTCTAAGA
12993589 TTTTGAGTGA
Statistics
Matches: 272, Mismatches: 50, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
151 2 0.01
152 107 0.39
153 4 0.01
154 5 0.02
156 3 0.01
157 4 0.01
158 58 0.21
159 89 0.33
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACACAGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTTCATCGCAGAGCACCCGC
ACGTCCATTTCGTCGGTTGACTTAG
Found at i:12994281 original size:26 final size:26
Alignment explanation
Indices: 12994251--12994303 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12994241 GTTGACTTAG
*
12994251 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
** *
12994277 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
12994303 G
1 G
12994304 ATTGGACTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGACTTCATCCCCAGTCTAA
Found at i:12994814 original size:158 final size:158
Alignment explanation
Indices: 12994329--12994819 Score: 468
Period size: 158 Copynumber: 3.1 Consensus size: 158
12994319 GGGTTGCAAA
* * * * *
12994329 AGCAGGATCGACAGCACGTAGGGGGGACCGAGTCGATCCTTAACTTGCACATTCTGCTTTTTCGA
1 AGCAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTAACTTGCACATTCTGCCTCTTCGA
* * * * *
12994394 TCGGGCTGAGTGCCCACACACCCATTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 -CCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* *
12994459 TAAGCCCCAGTCAGACCGAGGGTTGTGGC
130 TAAGCCCCAGACCGACCGAGGGTTGTGGC
** * * * * * *
12994488 AGTGGGACCGACAGCACACAGAGGGAGATCGGGTCGATCCCCAACTTGCACATTATGCCTC-TCT
1 AGCAGGATCGACAGCACGCAG-GGGGGATCGAGTCGATCCCTAACTTGCACATTCTGCCTCTTC-
*** * * * * *
12994552 GGTTGGCTCAATGCCTAAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-G
64 GACCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
** ** *
12994616 TCTAAG-ATCAGACCAGACCGAGGGTTACGGT
128 TCTAAGCCCCAGACC-GACCGAGGGTTGTGGC
* * * **
12994647 AGTAGGATCGATAGCACGCAGGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTTCGA
1 AGCAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTAACTTGCACATTCTGCCTCTTCGA
* ** * * *
12994712 CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCA
66 CCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* *
12994777 AAGCCCCAG-CCGTATCGAGGGTTGTGGG
131 AAGCCCCAGACCG-ACCGAGGGTTGTGGC
* *
12994805 AGCAAGATCGGCAGC
1 AGCAGGATCGACAGC
12994820 GGGATCGACA
Statistics
Matches: 257, Mismatches: 67, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
157 4 0.02
158 112 0.44
159 106 0.41
160 35 0.14
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTAACTTGCACATTCTGCCTCTTCGA
CCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCAGACCGACCGAGGGTTGTGGC
Found at i:12994967 original size:26 final size:26
Alignment explanation
Indices: 12994937--12994989 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12994927 GTTGAGTTAG
12994937 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12994963 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12994989 G
1 G
12994990 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12995679 original size:26 final size:26
Alignment explanation
Indices: 12995649--12995701 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12995639 GTTGACTTAG
*
12995649 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
12995675 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12995701 G
1 G
12995702 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12996186 original size:26 final size:26
Alignment explanation
Indices: 12996150--12996202 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12996140 GTTGGCTTAG
12996150 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCAT-TCTAA
12996176 GCATATGGAGTTCATTCCCATTCTAA
1 GCATATGGAGTTCATTCCCATTCTAA
12996202 G
1 G
12996203 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCATTCTAA
Found at i:12996517 original size:26 final size:26
Alignment explanation
Indices: 12996477--12996529 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12996467 TGGGTTGACT
12996477 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* * *
12996503 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
12996529 T
1 T
12996530 TAGATCAGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:12996860 original size:26 final size:26
Alignment explanation
Indices: 12996824--12996876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12996814 TTTGGCTTAG
*
12996824 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
12996850 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12996876 G
1 G
12996877 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12997240 original size:26 final size:26
Alignment explanation
Indices: 12997204--12997256 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12997194 GTTGACTTAG
*
12997204 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12997230 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12997256 G
1 G
12997257 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12997531 original size:159 final size:158
Alignment explanation
Indices: 12997305--12997734 Score: 406
Period size: 159 Copynumber: 2.7 Consensus size: 158
12997295 GCACGTAGGA
* * * *
12997305 GGGATCGGGCGAATCCCCAGCTTGCGCATTCTGCCTCTCCAATCGACTGAGCGCTCG-CACGTCC
1 GGGATCGGGCG-ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGACAC-T-C
* * * *
12997369 GTTTCATGGGTAGGCTTAGCCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGG
63 GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGG
* *
12997433 TTGTAGCAACGGGATTGGCAGCACACA-GAGG
128 TTGTAGCAACAGGATTGACAGCACACATG-GG
* * *
12997464 GGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCCGAACACTCG
1 GGGATCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG-ACACTCG
* * * * * ***
12997529 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCA-GTCTAAG-ATCAGACCGGTTTGAGGG
64 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCA-TTCCATGTCTAAGCACCAGACCGGACCGAGGG
* * ** *
12997592 TTTTGGCAGTAGGATTGACAGCACGCATGGG
128 TTGTAGCAACAGGATTGACAGCACACATGGG
* * * * * * *
12997623 GGGATCGGGCCGGTCTCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCA
1 GGGATCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG-ACACTCG
*
12997688 TTTCATGGGTTGG-TTGGGGCATACA-GAGTTCATTCCATGTCTAAGCA
64 TTTCATGGGTTGGCTT-AGGCATA-AGGAGTTCATTCCATGTCTAAGCA
12997735 TATGGAGTTC
Statistics
Matches: 218, Mismatches: 42, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
158 9 0.04
159 197 0.90
160 9 0.04
161 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGATCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGACACTCGTT
TCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTG
TAGCAACAGGATTGACAGCACACATGGG
Found at i:12997736 original size:26 final size:26
Alignment explanation
Indices: 12997706--12997758 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12997696 GTTGGTTGGG
12997706 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
12997732 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12997758 G
1 G
12997759 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13005675 original size:157 final size:156
Alignment explanation
Indices: 13005211--13005712 Score: 497
Period size: 159 Copynumber: 3.2 Consensus size: 156
13005201 CCTAGTCTAA
* * *
13005211 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
* * ** * * * *
13005276 GCACGCAAGGGGGACCGGGCTAAACCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCT
66 GCACGCAGGGGGGA-CAGG-TCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCC
* *
13005341 CGCACACCCATTTCATGGGTTGGCTTAG
129 CGCACACTCGTTTCATGGGTTGGCTTAG
* * ** * * * * ** * *
13005369 GCATAGGGAGTTCATTCCAAGTCTAA-ACCCCAG-CTGGACAGAAGGTCGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCAAGTCTAAGA--TCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGA
* * * * * *
13005432 CAGCACGCAGAGGGGGACCGAGTCGATCCCCGGTTTGCACATTATGCCTCTCCGATCGACTCAGT
64 CAGCACGCAG-GGGGGACAG-GTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGT
* * ** *
13005497 GCCTGTATGCTCGTTTCATGGGTTGACTTAG
126 GCCCGCACACTCGTTTCATGGGTTGGCTTAG
* * *
13005528 GCATACGGAGTTCATTTCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
* ** * *
13005593 ACACATAGGGGGGATCAGGTCGATCCCGGCTTGTGCATTCTGCCTCTCC-AGCCGATTGAGTGCC
66 GCACGCAGGGGGGA-CAGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAGTGCC
13005657 CGCACACTCGTTTCATGGGTTGGCTTAG
129 CGCACACTCGTTTCATGGGTTGGCTTAG
*
13005685 GCATACGGAGTTCATTCCATGTCTAAGA
1 GCATACGGAGTTCATTCCAAGTCTAAGA
13005713 ATAGGAGTTC
Statistics
Matches: 266, Mismatches: 69, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 80 0.30
158 71 0.27
159 113 0.42
160 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGACAGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCG
CACACTCGTTTCATGGGTTGGCTTAG
Found at i:13006093 original size:26 final size:26
Alignment explanation
Indices: 13006064--13006116 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13006054 GTTGACTTAG
13006064 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
13006090 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13006116 G
1 G
13006117 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13007585 original size:26 final size:26
Alignment explanation
Indices: 13007555--13007607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13007545 GTTGCCTTAG
**
13007555 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13007581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13007607 G
1 G
13007608 ATCAGACGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13008865 original size:26 final size:26
Alignment explanation
Indices: 13008813--13008865 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
13008803 GTTGGCTTAG
*
13008813 GCATACGATGTTCATTCCATGTGTAA
1 GCATACGATGTTCATTCCATGTCTAA
13008839 GCATACGGA-GTTCATTCCCA-GTCTAA
1 GCATAC-GATGTTCATT-CCATGTCTAA
13008865 G
1 G
13008866 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGATGTTCATTCCATGTCTAA
Found at i:13009343 original size:159 final size:159
Alignment explanation
Indices: 13009082--13009711 Score: 739
Period size: 159 Copynumber: 4.0 Consensus size: 159
13009072 CAGATCGGAT
* * * * * * * *
13009082 CGGATCGAGGGTTGCGACAGCAGGATCGATAACACGCAG-GGGGGACTGGGCCGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGACCGATCCCCGACTT
* * *
13009146 ATGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
66 ACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
*
13009211 GGGAGTTCATTCCATGTCTAAGCACCAAC
131 TGGAGTTCATTCCATGTCTAAGCACCAAC
* * * * * *
13009240 CGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGTAGAGGGGGACCGGATCGATCCCTGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGACCGATCCCCGACTT
** *
13009305 GTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
66 ACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
* **
13009370 TGGAGTTCATTCCATGTCTAAGCCCCAGT
131 TGGAGTTCATTCCATGTCTAAGCACCAAC
* * * * *
13009399 CGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACACAGAGAGGGACCAGG-CCGATCGCCGATT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACC-GGACCGATCCCCGACT
* * * * * * *
13009463 TACGCATTATGCCTTTTCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
65 TACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* *
13009528 ACGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
130 ATGGAGTTCATT-CCATGTCTAAGCACCA-AC
* * * * * *
13009558 CAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCA-AGGGTGGATCGGACCGGTCCCCAACT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGG-GGACCGGACCGATCCCCGACT
* ** *
13009622 TACACATTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCAT
65 TACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* *
13009687 ATAGAGTTCATTCCATGCCTAAGCA
130 ATGGAGTTCATTCCATGTCTAAGCA
13009712 TATGGAGTTC
Statistics
Matches: 393, Mismatches: 71, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
158 41 0.10
159 346 0.88
160 6 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGACCGATCCCCGACTT
ACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
TGGAGTTCATTCCATGTCTAAGCACCAAC
Found at i:13009940 original size:514 final size:514
Alignment explanation
Indices: 13009336--13010438 Score: 1331
Period size: 514 Copynumber: 2.1 Consensus size: 514
13009326 GGCTGAGCGC
* *
13009336 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCG
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* *
13009401 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACACAGAGAGGGACCAGG-CCGA-TCGCCGATTT
66 GACCGAGGGTTATGGCAGCGGGATCGACAGCACACAGAGAGGGACC-GGACCGATTC-CCGACTT
* * * * * * **
13009464 ACGCATTATGCCTTTTCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
129 ACACATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCACTTCATGGATTAACTTAGGCATA
* * * *
13009529 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACG
194 CAGAATTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACG
* ** * * *
13009594 CAAGG-GTGGATCGGACCGGTCCCCAACTTACACATTCTGCCTCTCCGATCGGCTGAGCGCCCGT
259 C-AGGAGGGGATCGGACCAATCCCCAACTTACACATTCTGCCTCTCCGATCGGCTAAGCACCCGC
* *
13009658 ACGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGCCTAAGCATATGGAGTTCA
323 ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCA
* *** *
13009723 TTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCAGCAGCAAGACCAACAACAGGATC-GACAG
388 TTCCCAGTCTAAGATCAGACTGAACCAAGGGTTACAGCAGCAAGACCAACAACAGGATCTG-CAG
* * * ** * * **
13009787 CACG-TAA-GGAGGGCCGGGTTGATCCCCGACTTGCGTATTCTGCCTCTT-CGATCGGTCGAGTG
452 CACGCAAACGG-GGACCGGGCTGATCCCCGACTTGCACATTCTGCCT-TTCCGACCAGTCGAGCA
* * *
13009849 CCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
1 CC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * *
13009914 GGACCGAGGGTTATGGCAGCGGGATCGATAGCACGCAGAGGGGGATCGGACCGATTCTCGACTTG
65 GGACCGAGGGTTATGGCAGCGGGATCGACAGCACACAGAGAGGGACCGGACCGATTCCCGACTTA
* * *
13009979 CACATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGCTTCATGGATTAACTTAGGCATAC
130 CACATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCACTTCATGGATTAACTTAGGCATAC
* * * * *
13010044 AGAATTCATTCATAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTAGGATTGACAGCACGC
195 AGAATTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGC
* ** * * * * *
13010109 AGGAGGGGATCGGGCCAATCCCCGGCTTACACATTCTGCCTCTTCGATCGGTTAAGCATCGGCAT
260 AGGAGGGGATCGGACCAATCCCCAACTTACACATTCTGCCTCTCCGATCGGCTAAGCACCCGCAC
* * * *
13010174 GCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
325 GCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCATT
* ** * ** * * **
13010239 CCTAGTCTAAGATTGGATTGAACCAAGGGTTATGGTAGCAGGACCAGTAACAGGATCTGCAGCAC
390 CCCAGTCTAAGATCAGACTGAACCAAGGGTTACAGCAGCAAGACCAACAACAGGATCTGCAGCAC
* * * *
13010304 GCAAACGGGGACCGGGCTGATCCCTGGCTTGCACATTCTGCCTTTCCGGCCAGTTGAGCA
455 GCAAACGGGGACCGGGCTGATCCCCGACTTGCACATTCTGCCTTTCCGACCAGTCGAGCA
* * *
13010364 CCGCACGCTCGTTTCATGGGTAGGCTTAGGC-TACAGAGTTCATTCCATGTCTAAACCCCAGCCG
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
13010428 GACCGAGGGTT
66 GACCGAGGGTT
13010439 GTGGTAGCAG
Statistics
Matches: 496, Mismatches: 86, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
513 47 0.09
514 403 0.81
515 44 0.09
516 2 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (514 bp):
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GACCGAGGGTTATGGCAGCGGGATCGACAGCACACAGAGAGGGACCGGACCGATTCCCGACTTAC
ACATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCACTTCATGGATTAACTTAGGCATACA
GAATTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCA
GGAGGGGATCGGACCAATCCCCAACTTACACATTCTGCCTCTCCGATCGGCTAAGCACCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACTGAACCAAGGGTTACAGCAGCAAGACCAACAACAGGATCTGCAGCACG
CAAACGGGGACCGGGCTGATCCCCGACTTGCACATTCTGCCTTTCCGACCAGTCGAGCA
Found at i:13010235 original size:26 final size:26
Alignment explanation
Indices: 13010199--13010249 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13010189 TGGCTTAGGT
13010199 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGGAGTTCATTCCTA-GTCTAAGC
13010225 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
13010250 ATTGGATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:13011099 original size:159 final size:157
Alignment explanation
Indices: 13010754--13011102 Score: 398
Period size: 157 Copynumber: 2.2 Consensus size: 157
13010744 CATGGGCAGG
* * * *
13010754 CTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGCTATCGCAGCGGGAT
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAAGGCTATCGCAGCGGGAC
* * *
13010819 CGATAGCACGTAGGGGGGACCGAGCCAATCCCCGGTTGCCCATTCTACCTCTCCGGCCAGCTGAG
66 CGACAGCACGTAGGGGGGACCGAGCCAATCCCCGGTTGCCCATTATACCTCTCCGGCCAGCTCAG
** *
13010884 CGTCCGCACACCCATTTCGTGGGTCGG
131 CACCCGCACACCCATTTCGTGGGTCGA
* * * *
13010911 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAAGGTTCTGGTAGCGGGAC
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAAGGCTATCGCAGCGGGAC
* ** * * *
13010976 CGACAGCACGTAGAGGGGGACC-AGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTC-GAC
66 CGACAGCACGTAG-GGGGGACCGA-GCCAATCCCCGG-TTGCCCATTATACCTCTCCGGCCAG-C
* * * *
13011039 TCAGCACCCGCACGCTCGTTTCGTGGGTTGA
127 TCAGCACCCGCACACCCATTTCGTGGGTCGA
* *
13011070 CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 CTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
13011103 ATACGAAGTT
Statistics
Matches: 161, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
157 70 0.43
158 20 0.12
159 68 0.42
160 3 0.02
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.21
Consensus pattern (157 bp):
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAAGGCTATCGCAGCGGGAC
CGACAGCACGTAGGGGGGACCGAGCCAATCCCCGGTTGCCCATTATACCTCTCCGGCCAGCTCAG
CACCCGCACACCCATTTCGTGGGTCGA
Found at i:13011112 original size:26 final size:26
Alignment explanation
Indices: 13011075--13011127 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13011065 GTTGACTTAG
* *
13011075 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
13011101 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
13011127 G
1 G
13011128 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:13011309 original size:26 final size:26
Alignment explanation
Indices: 13011259--13011311 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13011249 GTTGGCTTAG
* *
13011259 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13011285 GCATACAGAGTTCATTCC-TAATCTAA
1 GCATACAGAGTTCATTCCAT-ATCTAA
13011311 G
1 G
13011312 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13011598 original size:26 final size:26
Alignment explanation
Indices: 13011562--13011614 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13011552 GTTAGCTTAG
*
13011562 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13011588 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13011614 G
1 G
13011615 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13012211 original size:13 final size:13
Alignment explanation
Indices: 13012193--13012220 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
13012183 TGCACATTAT
13012193 GCCTCTCCGATCG
1 GCCTCTCCGATCG
13012206 GCCTCTCCGATCG
1 GCCTCTCCGATCG
13012219 GC
1 GC
13012221 TGAGCATCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.46, G:0.25, T:0.21
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:13012514 original size:158 final size:158
Alignment explanation
Indices: 13012319--13012622 Score: 407
Period size: 158 Copynumber: 1.9 Consensus size: 158
13012309 GATCGGATCG
*
13012319 GACCGAAGGTTGTGACAGTAGGATCGACAACACGCAGGGGGGA-CTGGGTCGAT-CCTCGGCTTG
1 GACCGAAGGTTGTGACAGTAGGATCGACAACACGCAGGGGGGATC-GGGTCGATCCCT-GACTTG
* * *
13012382 CGCATTCTGCCTCTCC-GATTGGATGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTCGGCATA
64 CGCATTCTGCCTCTCCAG-TCGGATGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
* *
13012446 GGGAGTTCATTCCATGTCTCAACCCTATCCA
128 CGAAGTTCATTCCATGTCTCAACCCTATCCA
* * * * * *
13012477 GACCGAGGGTTGTGCCAGTAGGATCGACAGCACGCAGGGGGGATCGGGTTGTTCCCTGACTTGTG
1 GACCGAAGGTTGTGACAGTAGGATCGACAACACGCAGGGGGGATCGGGTCGATCCCTGACTTGCG
* * ** *
13012542 CATTCTTCCTCTCCAGTCGGCTGAGCGCCCGTGCGCTCGTTTCATGGGTTGGCTTAGGCATACGA
66 CATTCTGCCTCTCCAGTCGGATGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGA
13012607 AGTTCATTCCATGTCT
131 AGTTCATTCCATGTCT
13012623 AAGCATACGG
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
158 121 0.96
159 5 0.04
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.26
Consensus pattern (158 bp):
GACCGAAGGTTGTGACAGTAGGATCGACAACACGCAGGGGGGATCGGGTCGATCCCTGACTTGCG
CATTCTGCCTCTCCAGTCGGATGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGA
AGTTCATTCCATGTCTCAACCCTATCCA
Found at i:13012650 original size:26 final size:26
Alignment explanation
Indices: 13012599--13012651 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13012589 GTTGGCTTAG
*
13012599 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGCCTAA
*
13012625 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACGAAGTTCATTCCAT-GCCTAA
13012651 G
1 G
13012652 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGCCTAA
Found at i:13019118 original size:26 final size:26
Alignment explanation
Indices: 13019068--13019120 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13019058 GTTGGCTTAG
* *
13019068 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
13019094 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
13019120 G
1 G
13019121 ATCTGATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:13020374 original size:26 final size:26
Alignment explanation
Indices: 13020344--13020396 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13020334 GTTGACTTAG
*
13020344 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
13020370 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
13020396 G
1 G
13020397 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:13020686 original size:159 final size:159
Alignment explanation
Indices: 13020509--13020873 Score: 376
Period size: 159 Copynumber: 2.3 Consensus size: 159
13020499 CCGTACACCT
* * * **
13020509 GTTTCGTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGT
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGT
** * * * *
13020574 TGTGGCAGCGGGA-CTGACAGCACGTAGAGGGG-GATGGGGTCGATCCCCGACTTGCGCATTATG
66 TACGGCAGCAGGATC-GACAGCACGCAG-GGGGTGATCGGGTCGATCCCCGACTTACGCATTATG
* *
13020637 CCTCTCTGGCTGGCTCAGCACCTGCACGCTC
129 CATCTCCGGCTGGCTCAGCACCTGCACGCTC
* ** *
13020668 GTTTCATGGGTTGACTTAGGCATACGGTGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGG
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGG
* * * * * * * *
13020732 TTACGGTAGTAGGATCGATAGCATGCAGGGGGTGATCGGGTCGATCCCTGGCTTATGCATTCTGC
65 TTACGGCAGCAGGATCGACAGCACGCAGGGGGTGATCGGGTCGATCCCCGACTTACGCATTATGC
* * ** *
13020797 ATCTCCGGTTGGCTGAGCGTCTGCACGCTG
130 ATCTCCGGCTGGCTCAGCACCTGCACGCTC
* ** *
13020827 GTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTGTAAGC
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13020874 ATACAGAGTT
Statistics
Matches: 166, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 7 0.04
159 155 0.93
160 4 0.02
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (159 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGT
TACGGCAGCAGGATCGACAGCACGCAGGGGGTGATCGGGTCGATCCCCGACTTACGCATTATGCA
TCTCCGGCTGGCTCAGCACCTGCACGCTC
Found at i:13020898 original size:26 final size:26
Alignment explanation
Indices: 13020846--13020898 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13020836 GTTGGCTTAG
*
13020846 GCATACAAAGTTCATTCCATGTGTAA
1 GCATACAAAGTTCATTCCATGTCTAA
*
13020872 GCATACAGAGTTCATT-CATAGTCTAA
1 GCATACAAAGTTCATTCCAT-GTCTAA
13020898 G
1 G
13020899 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGTCTAA
Found at i:13021237 original size:26 final size:26
Alignment explanation
Indices: 13021201--13021253 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13021191 GTTGACTTAG
13021201 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13021227 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13021253 G
1 G
13021254 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13021405 original size:343 final size:342
Alignment explanation
Indices: 13020589--13021569 Score: 795
Period size: 355 Copynumber: 2.8 Consensus size: 342
13020579 CAGCGGGACT
* * * * * * *
13020589 GACAGCACGTAGAGGGGGATGGGGTCGATCCC-CGACTTGCGCATTATGCCTCTCTGGCTGGCTC
1 GACAGCACGTAG-GGGGGATCGGGTCGATCCCAAGA-TTGCGCATTCTGCCTCTCTGACCGACTG
* * * * * * * * **
13020653 AGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGTGTTCATTCCCA-GTCTAAGATC
64 AGCGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCCAAGCCC
* * ** * * * ** * * *
13020717 GAACC-AGACCGAGGGTTACGGTAG-TAGGATCGATAGCATGC-AGGGGGTGATCGGGTCGATCC
128 CAGCCGA-ACCGAGGGTTGTGGCAGCGA-GACCGGCAGCACGCAAGGGGG-AAT-GGCTCGATCC
** * ** * * * * *
13020779 CTGGCTT-ATGCATTCTGCATCTCCGGTTGGCTGAGCGTCTGCACGCTGGTTTCA-TGGGTTGGC
189 CCAGCTTGA-GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTT-AGTGGGTTGAC
* * * * ** * *
13020842 TTAGGCATACAAAGTTCAT-TCCATGTGTAAGCATACAGAGTTCATTCATAGTCTAAGATCAGAT
252 TTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGAC
* *
13020906 CGGATCGAGGGTTGTGGTAGCAGGACCAGCAGCAGGATC
316 CGAATTGA-GG--GT--TA-C-GG--CA--A-CAGGATC
** * * *
13020945 GACAGCACGTAGGGGGGATCGGGTCGATCCCCTGCTTGCGCATTCTGCCTCTCTGGCTGACTGAG
1 GACAGCACGTAGGGGGGATCGGGTCGATCCCAAGATTGCGCATTCTGCCTCTCTGACCGACTGAG
** * *
13021010 CGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCGAGCCCCAT
66 CGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCCCCAG
** * *
13021075 TTGAATCGAGGGTTGTGGCAGC-AGGATCGGCAGCACGCAAAGGGGGACCA-GGCT-GATCCCCA
131 CCGAACCGAGGGTTGTGGCAGCGA-GACCGGCAGCACGC-AAGGGGGA--ATGGCTCGATCCCCA
* * * * *
13021137 GCTTGCA-CATTTTGCCTCTCCGGCCGGTTGAGCGCCTGCACGCTCATTTTAGT-GGTTGACTTA
192 GCTTG-AGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTC-GTTTAGTGGGTTGACTTA
13021200 GGCATACAGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGAA
255 GGCATACAGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGAA
13021265 TTGAGGGTTACGGCAACAGGATC
320 TTGAGGGTTACGGCAACAGGATC
* * **
13021288 GATAGCATGTAGGGGGGA-CGGGGTCGATCCCAAGATTGCGCATTCTGCCTCT-TCGACCGGTTG
1 GACAGCACGTAGGGGGGATC-GGGTCGATCCCAAGATTGCGCATTCTGCCTCTCT-GACCGACTG
* * * *
13021351 AGTGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCC
64 AGCGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCCCC
* * * * * **
13021416 AGCCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGTACGCAGGGGGGAATGGGTCGATCTCTGGC
129 AGCCGAACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAAGGGGGAATGGCTCGATCCCCAGC
* * * *
13021481 TTGAGCATTCTGGCTCTCCGGCTGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCA
194 TTGAGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTAGTGGGTTGACTTAGGCA
* *
13021546 TACGGAGTTCATTCCCAGTCTAAG
259 TACAGAGTTCATCCCCAGTCTAAG
13021570 ATTGGACTGG
Statistics
Matches: 515, Mismatches: 90, Indels: 54
0.78 0.14 0.08
Matches are distributed among these distances:
340 1 0.00
341 9 0.02
342 86 0.17
343 146 0.28
344 2 0.00
346 2 0.00
348 2 0.00
349 1 0.00
350 2 0.00
352 2 0.00
354 5 0.01
355 225 0.44
356 24 0.05
357 7 0.01
358 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (342 bp):
GACAGCACGTAGGGGGGATCGGGTCGATCCCAAGATTGCGCATTCTGCCTCTCTGACCGACTGAG
CGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCCCCAG
CCGAACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAAGGGGGAATGGCTCGATCCCCAGCTT
GAGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTAGTGGGTTGACTTAGGCATA
CAGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGAATTGAGG
GTTACGGCAACAGGATC
Found at i:13021845 original size:512 final size:514
Alignment explanation
Indices: 13021093--13022082 Score: 1251
Period size: 512 Copynumber: 1.9 Consensus size: 514
13021083 AGGGTTGTGG
* * * *
13021093 CAGCAGGATCGGCAGCACGCAAAGGGGGACCAGGCTGATCCCCAGCTTGCACATTTTGCCTCTCC
1 CAGCAGGATCGGCAGCACGCAAAGGGGGACCAGGCCGATCCCCAACTTACACATTCTGCCTCTCC
* * ** ** *
13021158 GGCCGGTTGAGCGCCTGCACGCTCATTTTAGTGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
66 GACAGACTGAGCGCCCACACGCTCAGTTTAGTGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
* * * *** *
13021223 CTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGAATTGAGGGTTACGGCAACAGGATC
131 CTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCGAACCAAGGGTTACAGCAACAGGATC
* * * * * *
13021288 GATAGCATGTAGGGGGGACGGGGTCGATCCCAAGATTGCGCATTCTGCCTCTTCGACCGGTTGAG
196 GATAGCACGCAGGGGGGACGGGGCCGATCCCAAGATTACGCATTCTGCCTCTCCGACCGGCTGAG
* *
13021353 TGCCCGCACG-CTCATTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCCA
261 CGCCCGCACGTC-CATTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * ** * * * * *
13021417 GCCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGTACGCAG-GGGGGAATGGGTCGAT-CTCTGG
325 GCCAGACCGAGGGTTGTGGCAGCGAGACCGACAACACGCAGAAGGGGAACGAGCCGATCCTC-GA
* *
13021480 CTTGAGCATTCTGGCTCTCCGG-CTGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGG
389 CTTGAGCATTCTGGCTCTCCGGTC-AGCTGAACGCCCGCACACTCGTTTCGTGGGTTGGCTTAGG
**
13021544 CATACGGAGTTCATTCCCA-GTCTAAGATTGGACTGGATCGAGAGTTGCAGTAGTAGGACCTA
453 CATACAAAGTTCATT-CCATGTCTAAGATTGGACTGGATCGAGAGTTGCAGTAGTAGGACCTA
* * * * *
13021606 CAGCAGGATCGGTAGCATGC-AGGGGGGACCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCC
1 CAGCAGGATCGGCAGCACGCAAAGGGGGACCAGGCCGATCCCCAACTTACACATTCTGCCTCTCC
* *
13021670 GACAGACTGAGTGCCCACACGCTC-GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
66 GACAGACTGAGCGCCCACACGCTCAGTTTAGT-GGTTGACTTAGGCATACAGAGTTCATCCCCAG
* * * *
13021734 TCTAAGTATACAGAGTTCATTCCAAGTCTAGGATCAGACCTG-ACCAAGGGTTGCAGCAGCAGGA
130 TCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACC-GAACCAAGGGTTACAGCAACAGGA
* * * * *
13021798 TTGGTAGCACGCAGGGGGGACTGGGCCGATCCC-CGACTTATGCATTCTGCCTCTCCGACCGGCT
194 TCGATAGCACGCAGGGGGGACGGGGCCGATCCCAAGA-TTACGCATTCTGCCTCTCCGACCGGCT
*
13021862 GAGCGCCCGCACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
258 GAGCGCCCGCACGTCCATTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * * * **
13021927 CAGCCAGATCGAGGGTTGTGGCAGTGGGACCGACAACACGTAGAAGGGGTCCGAGCCGATCCTCG
323 CAGCCAGACCGAGGGTTGTGGCAGCGAGACCGACAACACGCAGAAGGGGAACGAGCCGATCCTCG
* * * * *
13021992 ACTTGCGCATTTTGGCTCTCCGGTCAGCTGAACGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGG
388 ACTTGAGCATTCTGGCTCTCCGGTCAGCTGAACGCCCGCACACTCGTTTCGTGGGTTGGCTTAGG
13022057 CATACAAAGTTCATTCCATGTCTAAG
453 CATACAAAGTTCATTCCATGTCTAAG
13022083 GATAGGAGTT
Statistics
Matches: 402, Mismatches: 67, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
511 7 0.02
512 285 0.71
513 106 0.26
514 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (514 bp):
CAGCAGGATCGGCAGCACGCAAAGGGGGACCAGGCCGATCCCCAACTTACACATTCTGCCTCTCC
GACAGACTGAGCGCCCACACGCTCAGTTTAGTGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
CTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCGAACCAAGGGTTACAGCAACAGGATC
GATAGCACGCAGGGGGGACGGGGCCGATCCCAAGATTACGCATTCTGCCTCTCCGACCGGCTGAG
CGCCCGCACGTCCATTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
CCAGACCGAGGGTTGTGGCAGCGAGACCGACAACACGCAGAAGGGGAACGAGCCGATCCTCGACT
TGAGCATTCTGGCTCTCCGGTCAGCTGAACGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCAT
ACAAAGTTCATTCCATGTCTAAGATTGGACTGGATCGAGAGTTGCAGTAGTAGGACCTA
Found at i:13022805 original size:26 final size:26
Alignment explanation
Indices: 13022776--13022828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13022766 GTTGACTTAT
*
13022776 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13022802 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13022828 G
1 G
13022829 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13023149 original size:26 final size:26
Alignment explanation
Indices: 13023119--13023171 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13023109 GTTGGCTTAG
*
13023119 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
13023145 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
13023171 G
1 G
13023172 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:13023260 original size:11 final size:11
Alignment explanation
Indices: 13023241--13023273 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13023231 CCCAGGGCAC
13023241 CATCATCGGAG
1 CATCATCGGAG
*
13023252 CATCGTCGGAG
1 CATCATCGGAG
13023263 CATCATCGGAG
1 CATCATCGGAG
13023274 AGCTTAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.18
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:13023881 original size:26 final size:26
Alignment explanation
Indices: 13023851--13023903 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13023841 GATGACTTAG
13023851 GCATATAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
* *
13023877 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
13023903 G
1 G
13023904 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:13024174 original size:189 final size:185
Alignment explanation
Indices: 13023826--13024278 Score: 545
Period size: 189 Copynumber: 2.4 Consensus size: 185
13023816 GAGCATCCGT
* * ** *
13023826 ACGCTCGTTTCATGGGATGACTTAGGCATATAGAGTTCATCCCCA-GTCTAAGCATACGA-AGTT
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGAGAGTT
* * * **
13023889 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGGGG
65 CATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGATAACAGGATCGACAGCACGCAGGGGG
** ** * *
13023954 GACTGGCCCAATCCCCGGCTTATGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGC
130 GACTGGCCCAATCCCCGGCTTACACATTCTGCCTCTCCGACCGGCTAAGCGCCCGC
* * *
13024010 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCAGAGA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG---CATAC-GAGA
* * * *
13024075 GTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGTTTGCGATAACAGGATTGACAGCACGTAGG
62 GTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGATAACAGGATCGACAGCACGCAGG
* ** * * *
13024140 GGGGACTAGG-TCGGTCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGTGCCCGC
127 GGGGACT-GGCCCAATCCCCGGCTTACACATTCTGCCTCTCCGACCGGCTAAGCGCCCGC
* *
13024199 ACGCTTGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG-GAGTTC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAGAGTTC
13024263 ATTCCCAGTCTAAGAT
66 ATTCCCAGTCTAAGAT
13024279 TAGATCGGAT
Statistics
Matches: 229, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
183 3 0.01
184 64 0.28
185 1 0.00
186 4 0.02
187 4 0.02
188 2 0.01
189 149 0.65
190 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (185 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAGAGTTC
ATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGATAACAGGATCGACAGCACGCAGGGGGG
ACTGGCCCAATCCCCGGCTTACACATTCTGCCTCTCCGACCGGCTAAGCGCCCGC
Found at i:13024254 original size:26 final size:26
Alignment explanation
Indices: 13024224--13024276 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13024214 GTTGGCTTAG
13024224 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13024250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13024276 G
1 G
13024277 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13025432 original size:171 final size:170
Alignment explanation
Indices: 13025129--13025445 Score: 424
Period size: 171 Copynumber: 1.9 Consensus size: 170
13025119 CAAACTGGAC
*
13025129 CGAGGGTTACGGCAACAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGCCTGATCTC
1 CGAGGGTTACGGCAACAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACAGGCCTGATCTC
** * * *
13025194 CGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTA
66 CGGCTTACGCATTAAGCCTCTCAGACCGGCTGAGTGCCCGCACACTCGTTTAGTGGGTTGACTTA
13025259 GGCATACGAAGTTCATTCCATGTCTAAGCACCAGTCGAAT
131 GGCATACGAAGTTCATTCCATGTCTAAGCACCAGTCGAAT
** ** * *
13025299 CGAGGGTTGTGGCAACAGGACC-GACAGTGGGATCGACAGCATGCAGAGGGGGACAGGGCTGATC
1 CGAGGGTTACGGCAACAGGACCAG-CAGCAGGATCGACAGCACGCAG-GGGGGACAGGCCTGATC
** * *
13025363 TCCGGC-TAGCGCATTAAGCCTCTCAGGTCGGCTGAGTGCCCGCACTCTCATTTTAG-GGGTTGA
64 TCCGGCTTA-CGCATTAAGCCTCTCAGACCGGCTGAGTGCCCGCACACTC-GTTTAGTGGGTTGA
*
13025426 CTTAGGCATACGGAGTTCAT
127 CTTAGGCATACGAAGTTCAT
13025446 CCCCAGTTCT
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
169 1 0.01
170 41 0.33
171 80 0.63
172 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.21
Consensus pattern (170 bp):
CGAGGGTTACGGCAACAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACAGGCCTGATCTC
CGGCTTACGCATTAAGCCTCTCAGACCGGCTGAGTGCCCGCACACTCGTTTAGTGGGTTGACTTA
GGCATACGAAGTTCATTCCATGTCTAAGCACCAGTCGAAT
Found at i:13025948 original size:26 final size:26
Alignment explanation
Indices: 13025912--13025964 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13025902 GTTGGCTTAG
13025912 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13025938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13025964 G
1 G
13025965 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.