Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 66 of 138
Found at i:13026345 original size:26 final size:26
Alignment explanation
Indices: 13026307--13026358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13026297 TTGGCTTAGC
13026307 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
13026333 CATACGGATTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13026359 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13026697 original size:26 final size:26
Alignment explanation
Indices: 13026661--13026713 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13026651 GTTGACTTAG
13026661 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13026687 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13026713 G
1 G
13026714 ATCTAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13027533 original size:26 final size:26
Alignment explanation
Indices: 13027497--13027549 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13027487 GTTGACTTAG
13027497 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13027523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13027549 G
1 G
13027550 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13027977 original size:26 final size:26
Alignment explanation
Indices: 13027928--13027980 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13027918 GTTGGCTTAG
*
13027928 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13027954 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
13027980 G
1 G
13027981 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13028681 original size:26 final size:26
Alignment explanation
Indices: 13028652--13028704 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13028642 GTTGACTTAG
13028652 GCATAGGGAGTTCATCCCCAGTATAA
1 GCATAGGGAGTTCATCCCCAGTATAA
* * *
13028678 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTATAA
13028704 G
1 G
13028705 ATCATACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCCAGTATAA
Found at i:13029072 original size:26 final size:26
Alignment explanation
Indices: 13028996--13029064 Score: 138
Period size: 26 Copynumber: 2.7 Consensus size: 26
13028986 TTGACTTAGG
13028996 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATGTCTAAC
13029022 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATGTCTAAC
13029048 CATACGGAGTTCATTCC
1 CATACGGAGTTCATTCC
13029065 CAATCTAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAC
Found at i:13029773 original size:26 final size:26
Alignment explanation
Indices: 13029744--13029796 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13029734 GTTGACTTAG
*
13029744 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
13029770 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13029796 G
1 G
13029797 ATCAGACCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13030069 original size:159 final size:158
Alignment explanation
Indices: 13029830--13030590 Score: 557
Period size: 159 Copynumber: 4.8 Consensus size: 158
13029820 GTAGCAGGAT
* * * * *
13029830 CGACAGCACACAG-GGGGGACTGGACCGATGCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTG
1 CGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-CGGTCGGCTG
*
13029894 AGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC
*
13029959 AACTGGACCGAGGGTTGTGGCAGCGGGAC
130 AACAGGACCGAGGGTTGTGGCAGCGGGAC
* * * * *
13029988 CGATAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCTTACGCATTATGCCTTTACGGTCGGCTT
1 CGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-CGGTCGGCTG
* * * * **
13030053 AGCACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATACA-GAGTTCATTCCCA-GTCTAAGAT
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATT-CCATGTCTAAGCC
* * * * * * * * ** *
13030116 CGAACCGAACTGATGCTTGCGACAGAAGGAT
128 CCAACAGGACCGAGGGTTGTGGCAGCGGGAC
* * ** * * * * *
13030147 TGACAGCATGCA-AGGGGGACCAGGCCGATCCTCAGCTTGCACAGTCTGCCTCTCTGGTCGGCTG
1 CGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTC-GGTCGGCTG
* * * * * *
13030211 AGCGTCCGCACGCGCCTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC
* *
13030276 AGCAGGATCGAGGGTTGTGGCAGCGGGAC
130 AACAGGACCGAGGGTTGTGGCAGCGGGAC
** * * * * * *** *
13030305 CTCCAGCACGTAGAGGGGGATTGGGTCGATCCTCGACTTGCGCATTATGCCTCTTTATCTGGCTC
1 CGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCGGTC-GGCTG
* * * * * *
13030370 AGTGCCCGCACGTTCGTTTCGTGGGTTGACTTATGCATACA-TAGTTCATTCCCA-GTCTAAG-A
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATT-CCATGTCTAAGCC
* * * * * ** *
13030432 TCAGACCGGACCAAGGGTTGGGGTAGCAAGAT
128 CCA-ACAGGACCGAGGGTTGTGGCAGCGGGAC
* * * * ** * * * **
13030464 CGATAGCACGGAGGGGGGGACCGGGGTGATGCCCGGCTTGTGCATTCTGCCTCTTCGGTCAACTG
1 CGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCGGTCGGCTG
* * * * ** * *
13030529 AGTGCCCACACGCTCATTTCGTGGGTTGACTTATTCATACGGAGTTCATCCCCA-GTCTAAGC
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGC
13030591 ATACAGAGTT
Statistics
Matches: 454, Mismatches: 134, Indels: 28
0.74 0.22 0.05
Matches are distributed among these distances:
157 4 0.01
158 125 0.28
159 315 0.69
160 10 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCGGTCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
ACAGGACCGAGGGTTGTGGCAGCGGGAC
Found at i:13030352 original size:317 final size:317
Alignment explanation
Indices: 13029770--13030439 Score: 825
Period size: 317 Copynumber: 2.1 Consensus size: 317
13029760 CCCAGTCTAA
* * * * * *
13029770 GCATACGGAGTTCATTGCCAGTCTAAGATCAGACCGTACTGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGCTTGCAGCAGAAGGATCGACA
* * * * *
13029835 GCACACAGGGGGGACTGGACCGATGCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACACAAGGGGGACAGGACCGATGCCCAGCTTGCACAGTCTGCCTCTCCGGTCGACTGAGCGCC
* * * * *
13029900 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACTGG
131 CGCACGCGCCTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACAGG
* *
13029965 ACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCTTACG
196 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCTGATCCCCGACTTACG
*
13030030 CATTATG-C-CTTTA-CGGTCGGCTTAGCACCCGAACACTCGTTTCGTGGGTTGACTTAG
261 CATTATGCCTCTTTATC--T-GGCTCAGCACCCGAACACTCGTTTCGTGGGTTGACTTAG
* *
13030087 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAACCGAACTGATGCTTGC-GACAGAAGGATTGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTGAGGCTTGCAG-CAGAAGGATCGA
** * *
13030150 CAGCATGCAAGGGGGACCAGG-CCGAT-CCTCAGCTTGCACAGTCTGCCTCTCTGGTCGGCTGAG
64 CAGCACACAAGGGGGA-CAGGACCGATGCC-CAGCTTGCACAGTCTGCCTCTCCGGTCGACTGAG
* * * *
13030213 CGTCCGCACGCGCCTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
127 CGCCCGCACGCGCCTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAA
* ** * * *
13030278 CAGGATCGAGGGTTGTGGCAGCGGGACCTCCAGCACGTAGAGGGGGATTGGG-TCGATCCTCGAC
192 CAGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCT-GATCCCCGAC
* ** * ** *
13030342 TTGCGCATTATGCCTCTTTATCTGGCTCAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAT
256 TTACGCATTATGCCTCTTTATCTGGCTCAGCACCCGAACACTCGTTTCGTGGGTTGACTTAG
*
13030404 GCATACATAGTTCATTCCCAGTCTAAGATCAGACCG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCG
13030440 GACCAAGGGT
Statistics
Matches: 301, Mismatches: 43, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
316 5 0.02
317 284 0.94
318 6 0.02
319 5 0.02
320 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGCTTGCAGCAGAAGGATCGACA
GCACACAAGGGGGACAGGACCGATGCCCAGCTTGCACAGTCTGCCTCTCCGGTCGACTGAGCGCC
CGCACGCGCCTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACAGG
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCTGATCCCCGACTTACG
CATTATGCCTCTTTATCTGGCTCAGCACCCGAACACTCGTTTCGTGGGTTGACTTAG
Found at i:13030600 original size:26 final size:26
Alignment explanation
Indices: 13030564--13030615 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13030554 TTGACTTATT
*
13030564 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
13030590 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
13030616 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:13030773 original size:184 final size:185
Alignment explanation
Indices: 13030404--13030774 Score: 408
Period size: 184 Copynumber: 2.0 Consensus size: 185
13030394 GTTGACTTAT
* * ** *
13030404 GCATACATAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGGGGTAGCAAGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAAGATCGACA
* **** ** * * *
13030469 GCACGGAGGGGGGGACCGGGGTGATGCCCGGCTTGTGCATTCTGCCTCTTCGGTCAACTGAGTGC
66 GCACGCAGGGGGGGACCGAACCGAACCCCGGCTCGCGCATTCTGCCTCTTCGGTCAACTGAGCGC
* ** *
13030534 CCACACGCTCATTTCGTGGGTTGACTTATTCATACGGAGTTCATCCCCAGTCTAA
131 CCACACGCCCATTTCGTGGGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAA
* * * *
13030589 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAA-GGTTGCGACAGCAGGATCGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-CAAGGGTTGCGACAGCAAGATCGAC
* * *
13030653 AGCACGCA-GGGGGGATCGAACCGAACCCCGGCTCGCGCATTCTGTCT-TTCTGGTCGACTGAGC
65 AGCACGCAGGGGGGGACCGAACCGAACCCCGGCTCGCGCATTCTGCCTCTTC-GGTCAACTGAGC
* * * * *
13030716 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGACTTCAT-TCCATGTCTAA
129 GCCCACACGCCCATTTCGTGGGTTGACTTAGGCATACGGACTTCATCCCCA-GTCTAA
13030773 GC
1 GC
13030775 CCCGGCTGGA
Statistics
Matches: 152, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
183 6 0.04
184 85 0.56
185 59 0.39
186 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAAGATCGACA
GCACGCAGGGGGGGACCGAACCGAACCCCGGCTCGCGCATTCTGCCTCTTCGGTCAACTGAGCGC
CCACACGCCCATTTCGTGGGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAA
Found at i:13031094 original size:26 final size:26
Alignment explanation
Indices: 13031064--13031116 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13031054 GTTAACTGAG
*
13031064 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13031090 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13031116 G
1 G
13031117 ATCAAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13031278 original size:501 final size:501
Alignment explanation
Indices: 13030087--13031626 Score: 1538
Period size: 501 Copynumber: 3.1 Consensus size: 501
13030077 GTTGACTTAG
* * * * * * * * *
13030087 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGATGCTTGCGACAGAAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGAACTCAAGGTTACGACAGCAGGATCGGCA
* * * * * * * * * *
13030152 GCATGCAAGGGG-GA-CCAGGCCGATCCTC-AGCTTGCACAGTCTGCCTCTCTGGTCGGCTGAGC
66 GCACGC-AGGGGAGATCGA-ACCGAACCCCGA-CTCGCACATTCTGCCTTTCTGGCCGACTGAGC
** * * *
13030214 GTCCGCACGCGCC-TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
128 ACCCGCACAC-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* ** *
13030278 CAGGATCGAGGGTTGTGGCAGCGGGACCTCCAGCACGTAGAGGGGGATTGGG-TCGATCCTCGAC
192 CAGGACCGAGGGTTGTGGCAGCGGGACCAACAGCACGTAGAGGGGGATCGGGCT-GATCCTCGAC
* * *
13030342 TTGCGCATTATGCCTCTT-TATCTGGCTCAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTATGC
256 TTGCGCATTATGCCTCTTCCATC-GGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTATGC
* * ** * *
13030406 ATACATAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGGGGTAGCAAGATCGATAGC
320 ATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGCAAGATCAATAGC
* * ** * *
13030471 ACGGAGGGGGGGACCGGGGT-GATGCCCG-GCTTGTGCATTCTGCCTCTTCGGT-CAACTGAGTG
385 ACGCA-GGGGGGATC-GGGTCGAT-CCCGAGCTTGTGCATTCTGCCTC-TCCATCCAGCTGAGCG
* * **
13030533 CCCACACGCTCATTTCGTGGGTTGACTTATTCATACGGAGTTCATCCCCAGTCTAA
446 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
13030589 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACTGAAGGTTGCGACAGCAGGATCGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACT-GAACTCAAGGTTACGACAGCAGGATCGGC
* * * * * *
13030653 AGCACGCAGGGGGGATCGAACCGAACCCCGGCTCGCGCATTCTGTCTTTCTGGTCGACTGAGCGC
65 AGCACGCAGGGGAGATCGAACCGAACCCCGACTCGCACATTCTGCCTTTCTGGCCGACTGAGCAC
* * * *
13030718 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCGGCTG
130 CCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAG
* *
13030783 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGAGGGATCGGGCTGATCCTCGACTTGC
195 GACCGAGGGTTGTGGCAGCGGGACCAACAGCACGTAGAGGGGGATCGGGCTGATCCTCGACTTGC
* * * * *
13030848 GCATTATGCCTCTTCGATCGACTCAGCGCCCGCACGGTCATTTCATGGGTTGACTTATGCATACA
260 GCATTATGCCTCTTCCATCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACA
* * * * * * * * *
13030913 GAGTTCATTCCTAGTCTAAGATCAGATTGGACCGAGGGTTACAACAGGATGATCAACAGCACGTA
325 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGCAAGATCAATAGCACGCA
* * *
13030978 GGGGGGATCGGGTCGATCCCGAGCTTGTGCATTCTGCCTCTCCATCCAGCTGAACGACCGCATGC
390 GGGGGGATCGGGTCGATCCCGAGCTTGTGCATTCTGCCTCTCCATCCAGCTGAGCGCCCGCACGC
* * *
13031043 TCGTTTCATGGGTTAACTGAGGCATACGGAGTTCATCCCCAGTCTAA
455 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* *
13031090 GCATACAGAGTTCATTCCCATTCTAAGATCAAACTGAAC-CAAGGGTTACGGCTA-CAGGATCGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGAACTCAA-GGTTACGAC-AGCAGGATCGG
* * *** * * * ** *
13031153 TAGCATGCAGGGGAGATCGGGGCGATCCCTGACTTGCATTTTCTGCCTCTTC-GGCCGGCTGAGC
64 CAGCACGCAGGGGAGATCGAACCGAACCCCGACTCGCACATTCTGCCT-TTCTGGCCGACTGAGC
* * * * *
13031217 ACCCGTATACCTGTTTCGTGGGTTGGCTTAGGCTTAAGGAGTTCATTCCATGTCTAAGCCCCAGC
128 ACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
* * * * * * * * * * *
13031282 CA-GACTGAGTGTTGTGGCAGTGGGACCAATAGCATGCAGAGGGGGACCGGACCGATCCCCGGCT
192 CAGGACCGAGGGTTGTGGCAGCGGGACCAACAGCACGTAGAGGGGGATCGGGCTGATCCTCGACT
* * *
13031346 TGCGCATTATGACTC-TCCAGCCGGCTCAGTGCCCGTC-CGCTCATTCCGTGGGTTGACTT-TGG
257 TGCGCATTATGCCTCTTCCA-TCGGCTCAGTGCCCG-CACGCTCATTTCGTGGGTTGACTTAT-G
* * * *
13031408 CATGC-GAAGTTCATTCCCAGTCTAAGACCAGACTGGACCAAGGGTTGCCGCAGCAGGATCAATA
319 CATACAG-AGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGCAAGATCAATA
* * * * ** * * *
13031472 GTACACAAGGAGGATCGGGTCGATCCTCGA-CTTACGCATTCTACCTGTCCGA-CCGGCTGAGCG
383 GCACGCAGGGGGGATCGGGTCGATCC-CGAGCTTGTGCATTCTGCCTCTCC-ATCCAGCTGAGCG
* * * *
13031535 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATGCGAAGTTCAT-TCCATGTCTAA
446 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
*
13031591 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACTG
13031627 GATCGAAGGT
Statistics
Matches: 862, Mismatches: 154, Indels: 45
0.81 0.15 0.04
Matches are distributed among these distances:
500 21 0.02
501 508 0.59
502 327 0.38
503 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (501 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGAACTCAAGGTTACGACAGCAGGATCGGCA
GCACGCAGGGGAGATCGAACCGAACCCCGACTCGCACATTCTGCCTTTCTGGCCGACTGAGCACC
CGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGG
ACCGAGGGTTGTGGCAGCGGGACCAACAGCACGTAGAGGGGGATCGGGCTGATCCTCGACTTGCG
CATTATGCCTCTTCCATCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGCAAGATCAATAGCACGCAG
GGGGGATCGGGTCGATCCCGAGCTTGTGCATTCTGCCTCTCCATCCAGCTGAGCGCCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:13032321 original size:26 final size:26
Alignment explanation
Indices: 13032283--13032338 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
13032273 TAGGTTGGCT
13032283 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
13032309 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
13032335 TAAG
1 TAAG
13032339 ATTGTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:13038893 original size:26 final size:26
Alignment explanation
Indices: 13038856--13038908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13038846 GTTGACTTAG
*
13038856 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
13038882 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
13038908 G
1 G
13038909 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13039394 original size:26 final size:26
Alignment explanation
Indices: 13039358--13039410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13039348 GTTGGCTTAG
13039358 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13039384 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13039410 G
1 G
13039411 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13039511 original size:185 final size:185
Alignment explanation
Indices: 13039199--13039596 Score: 588
Period size: 185 Copynumber: 2.2 Consensus size: 185
13039189 GTTGACTTAG
* * ** *
13039199 GCATACGGAATTCATTCTCAGTCTAAGATCGACTCGGACTGAGGGTTGCGTCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACTCGGACCAAGGGTTGCGGCAGCAGGATCAACA
* *
13039264 GCACACAGGGGAGGATCGGGTCGATCCCCGGCTTATGCATTCTACCTCTTCGGTCAACTGAGCAC
66 GCACACAGGGGAGGATCGGGTCGATCCCCGACTTATGCATTCTACCTCTTCGGCCAACTGAGCAC
13039329 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
**
13039384 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGGACCAAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACTCGGACCAAGGGTTGCGGCAGCAGGATCAAC
* * * * *
13039448 AGCACACAGGGGGGGATCGGG-CTGATCTCCGACTT-TCGCATTTTGCCTC-TCTGGCCGACTGA
65 AGCACACAGGGGAGGATCGGGTC-GATCCCCGACTTAT-GCATTCTACCTCTTC-GGCCAACTGA
* *
13039510 GCACTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 GCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13039569 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
13039597 GTTTGAGGCA
Statistics
Matches: 193, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
184 4 0.02
185 186 0.96
186 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACTCGGACCAAGGGTTGCGGCAGCAGGATCAACA
GCACACAGGGGAGGATCGGGTCGATCCCCGACTTATGCATTCTACCTCTTCGGCCAACTGAGCAC
CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13039579 original size:26 final size:26
Alignment explanation
Indices: 13039543--13039595 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13039533 GTTGGCTTAG
13039543 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13039569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13039595 G
1 G
13039596 AGTTTGAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13041351 original size:159 final size:159
Alignment explanation
Indices: 13041150--13041525 Score: 386
Period size: 158 Copynumber: 2.4 Consensus size: 159
13041140 CGGCTGAGTG
* * * * *
13041150 CCTGCACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
1 CCTGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* * ** * * *
13041214 CAGATCGAGGGTTATGGTAGCAAGACCGGTAGCAC-TCAGATGGGTACCGGGCTGATCCCCGACT
66 CAGATCAAGGGTTATGGCAGCAAGACCGACAGCACGT-AG-GGGGGACCGGGCCGATCCCCGACT
* * *
13041278 TGCACATTATCCCTCTTCTAT-TGGCTCAGCGT
129 TGCACATTATCCCTCTCCGATCT-GCTCAGC-A
* * * ***
13041310 CC-GAACGCTCATTTCGTGAGTTGCCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATTGGA
1 CCTGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * *
13041372 CCAGATCAAGGGTTATGGCAGCACGATCGACAGCACGTAGGGGGGATCGGGCCGGTCCCCGACTT
65 CCAGATCAAGGGTTATGGCAGCAAGACCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTT
* * * *
13041437 GCACATTTTGCCTCTCCGATCTTCTGAGCA
130 GCACATTATCCCTCTCCGATCTGCTCAGCA
* *
13041467 CCTGCACGGTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCTGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13041526 TACAGAGTTC
Statistics
Matches: 175, Mismatches: 34, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.03
158 87 0.50
159 77 0.44
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (159 bp):
CCTGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGATCAAGGGTTATGGCAGCAAGACCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTG
CACATTATCCCTCTCCGATCTGCTCAGCA
Found at i:13041526 original size:26 final size:26
Alignment explanation
Indices: 13041497--13041549 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13041487 GTTGGCTTAG
*
13041497 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
13041523 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
13041549 G
1 G
13041550 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:13041747 original size:196 final size:196
Alignment explanation
Indices: 13041403--13041774 Score: 489
Period size: 196 Copynumber: 1.9 Consensus size: 196
13041393 CACGATCGAC
* ** * * * **
13041403 AGCACGTAGGGGGGATCGGGCCGGTCCCCGACTTGCACATTTTGCCTCTCCGATCTTCTGAGCAC
1 AGCACGTAGGGGGGACCAAGCCGATCCCCGACTTACACATTCTGCCTCTCCGATCGGCTGAGCAC
* * *
13041468 CTGCACGGTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
66 CTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAG
* * * * *
13041533 TTCATTCCTAGTCTAAGATTGGACCGGA-CTGAGGGTTGCGGCAGCAGGTCCAGTAGCAGGATCG
131 TTCAATCCCAGCCTAAGATTGAACCGGATC-GAGGGTTACGGCAGCAGGTCCAGTAGCAGGATCG
13041597 GT
195 GT
* *
13041599 AGCATGTAGGGGGGACCAAGCCGATCCCCGACTTACACATTCTGCCTCTCCGATCGGCTGAGCGG
1 AGCACGTAGGGGGGACCAAGCCGATCCCCGACTTACACATTCTGCCTCTCCGATCGGCTGAGC-A
* * * *
13041664 CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTATCCCCA-GTCTAAGCATACGG
65 CCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACAG
*
13041727 AGTTCAATCCCAGCCTAAGATTGAACTGGATCGAGGGTTACGGCAGCA
129 AGTTCAATCCCAGCCTAAGATTGAACCGGATCGAGGGTTACGGCAGCA
13041775 AGATCGACAG
Statistics
Matches: 150, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
196 144 0.96
197 6 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (196 bp):
AGCACGTAGGGGGGACCAAGCCGATCCCCGACTTACACATTCTGCCTCTCCGATCGGCTGAGCAC
CTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAG
TTCAATCCCAGCCTAAGATTGAACCGGATCGAGGGTTACGGCAGCAGGTCCAGTAGCAGGATCGG
T
Found at i:13042202 original size:26 final size:26
Alignment explanation
Indices: 13042173--13042225 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13042163 GTTGACATAG
* *
13042173 GCATACGTAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13042199 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13042225 G
1 G
13042226 ATCAGACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13042583 original size:26 final size:26
Alignment explanation
Indices: 13042553--13042605 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13042543 GTTGACTTGG
13042553 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13042579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13042605 G
1 G
13042606 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13043089 original size:26 final size:26
Alignment explanation
Indices: 13043053--13043105 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13043043 GTTGACTTAG
*
13043053 GCATATGGAGTTCATTC-CACGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
13043079 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13043105 G
1 G
13043106 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13043440 original size:159 final size:159
Alignment explanation
Indices: 13043243--13043594 Score: 395
Period size: 159 Copynumber: 2.2 Consensus size: 159
13043233 TTTGTGTTTC
* * *
13043243 GGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCCCCAGCCGA-ACCGAGGGTTGTGGCAGTGG
1 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CGAGACCGAGGGTTGTGGCAGCGG
* ** *
13043307 GACCGACAGCACACATAGGGGGATTGAGCT-GGTCCCCGGCATGCGCATTATGCCTCTTCGGCCG
65 GACCGACAGCACACAGAGGGGGAGCG-GCTCGATCCCCGGCATGCGCATTATGCCTCTTCGGCCG
* * * * *
13043371 GATCAGTGCCCGTATGCCCGTTTCGTGGGTT
129 GATCAGTGCACGCACGCCCATTTCATGGGTT
* ** * *
13043402 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTAGATCGAGGGTTGTGGTAGCGGG
1 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCGAGACCGAGGGTTGTGGCAGCGGG
* ** * * * * * *
13043467 ATCGGTAGCACGCAGAGGGGGAGCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGC
66 ACCGACAGCACACAGAGGGGGAGCGGCTCGATCCCCGGCATGCGCATTATGCCTCTTCGGCCGGA
*
13043532 TCAGTGCACGCACGCTCATTTCATGGGTT
131 TCAGTGCACGCACGCCCATTTCATGGGTT
* *
13043561 GACTTATGCATACGGAGTTCATTCC-TAGTCTAAG
1 GGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG
13043595 ATAAGATCGG
Statistics
Matches: 160, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
158 4 0.03
159 156 0.98
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (159 bp):
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCGAGACCGAGGGTTGTGGCAGCGGG
ACCGACAGCACACAGAGGGGGAGCGGCTCGATCCCCGGCATGCGCATTATGCCTCTTCGGCCGGA
TCAGTGCACGCACGCCCATTTCATGGGTT
Found at i:13043611 original size:159 final size:156
Alignment explanation
Indices: 13043339--13043754 Score: 420
Period size: 159 Copynumber: 2.6 Consensus size: 156
13043329 ATTGAGCTGG
* * * * * * *
13043339 TCCCCGGCATGCGCATTATGCCTCTTCGGCCGGATCAGTGCCCGTATGCCCGTTTCGTGGGTTGG
1 TCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGAATGCTCATTTCGTGGGTTGA
* *** * * ** ** *
13043404 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTAGATCGAGGGTTGTGGTAGCGGGAT
66 CTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATAAGTCAGACCGAGGGTTACGACAGCAGGAT
** *
13043469 CGGTAGCACGCAGAGGGGGAGCGGGTCGA
129 CAATAGCACACAG-GGGGGAGCGGGTCGA
* * * * *
13043498 TCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGTGCACGCACGCTCATTTCATGGGTTGA
1 TCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGAATGCTCATTTCGTGGGTTGA
* *
13043563 CTTATGCATACGGAGTTCATTCCTAGTCTAAGATAAGATCGGACCGAGGGTTACGACAGCAGGAT
66 CTTAGGCATACGGAGTTCATTCC-AGTCTAAGATAAG-TCAGACCGAGGGTTACGACAGCAGGAT
*
13043628 CAATAGCACACAGGGGGGATCGGGTCGA
129 CAATAGCACACAGGGGGGAGCGGGTCGA
* * * *** * *
13043656 TCCCCGACTTGTGCATTCTGCCTC-TCCAATCAGCTCAGTGCCCGAATGCTCATTTTGTGGGTTG
1 TCCCCGGCTTGCGCATTATGCCTCTTCGGCT-GGCTCAGTGCCCGAATGCTCATTTCGTGGGTTG
*
13043720 ACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
65 ACTTAGGCATACGGAGTTCATT-CCAGTCTAAGAT
13043755 CGGACCAGAC
Statistics
Matches: 210, Mismatches: 43, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
157 3 0.01
158 93 0.44
159 113 0.54
160 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.26
Consensus pattern (156 bp):
TCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGAATGCTCATTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCAGTCTAAGATAAGTCAGACCGAGGGTTACGACAGCAGGATCA
ATAGCACACAGGGGGGAGCGGGTCGA
Found at i:13043771 original size:158 final size:156
Alignment explanation
Indices: 13043472--13043909 Score: 429
Period size: 158 Copynumber: 2.8 Consensus size: 156
13043462 GCGGGATCGG
* * * * *
13043472 TAGCACGCAGAGGGGGAGCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGC-TGGCTCAG
1 TAGCACGCAG-GGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTC-TC--CATCGCTCAG
* * * *
13043536 TGCACGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATAAGA
62 TGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGA
* * *
13043601 TCGGACCGAGGGTTAC-GACAGCAGGATCAA
127 CCAGACCGAGGGTTACAG-CAACAGGATCAA
* *
13043631 TAGCACACAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCAATCAGCTCAGTG
1 TAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCC-ATC-GCTCAGTG
* * ** **
13043696 CCCGAATGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
64 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACC
* * *
13043761 AGACTGAGGGTTGCAGCAACAGGATCGA
129 AGACCGAGGGTTACAGCAACAGGATCAA
* * * * *
13043789 CAGCACGCAGGGCGGGATCGGG-CTGGTCCTC-AGCTTGTGCTTTCTACCTCTCCGATCGACTGA
1 TAGCACGCAGGG-GGGATCGGGTC-GATCCTCGA-CTTGTGCATTCTGCCTCTCC-ATCG-CTCA
* * *
13043852 GTACCCGCACGCTCATTTCATGGG-TCAGCTTAGGCATAC-AGAGTTCATTCACAGTCTA
61 GTGCCCGCACGCTCATTTCATGGGTTGA-CTTAGGCATACGA-AGTTCATTCCCAGTCTA
13043910 TGCATGCAGA
Statistics
Matches: 231, Mismatches: 38, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
155 1 0.00
157 3 0.01
158 133 0.58
159 94 0.41
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (156 bp):
TAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCATCGCTCAGTGCC
CGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAG
ACCGAGGGTTACAGCAACAGGATCAA
Found at i:13043919 original size:26 final size:26
Alignment explanation
Indices: 13043885--13043935 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13043875 GTCAGCTTAG
13043885 GCATACAGAGTTCATTCACAGTCTAT
1 GCATACAGAGTTCATTCACAGTCTAT
* *
13043911 GCATGCAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCACAGTCTA
13043936 AGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAT
Found at i:13045611 original size:158 final size:157
Alignment explanation
Indices: 13045137--13045638 Score: 553
Period size: 158 Copynumber: 3.2 Consensus size: 157
13045127 CCCCGTCTAA
* * * * *
13045137 GCATACAGAGTTCATTTC-TAGTCTAAGATCGAACTGGTCCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * *
13045201 AGCACGCAGAGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGC
65 AGCACGCAGAGGGGACC-GGTCGATCCCTGACTTGCGTATTCTGCCTCTCCGACCGGCTAAGCGC
* *
13045266 CCACACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
13045295 GCGTAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCAGGACCGACA
** * * * *
13045360 ATACGCAGAGGGGGACTGAGTCGATCCTCTG-CTTGCGTATTATGCCTCTCCGATCGGCTCAGCG
66 GCACGCAGA-GGGGACCG-GTCGATCC-CTGACTTGCGTATTCTGCCTCTCCGACCGGCTAAGCG
* * *
13045424 CCCGCAGGCTCGTTTCATGGGTTGACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
13045454 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGACCAAGGGTTGTAGTAGCAGGACCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * *
13045518 AGCACCCAG-GGGGCACCGCTCTGATCCCCGACTTGTGTATTCTGCCTCTCCGACCGACTGAGCA
65 AGCACGCAGAGGGG-ACCGGTC-GATCCCTGACTTGCGTATTCTGCCTCTCCGACCGGCTAAGCG
13045582 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
13045612 GAATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13045639 CATATGGAGT
Statistics
Matches: 282, Mismatches: 53, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 11 0.04
158 143 0.51
159 122 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGAGGGGACCGGTCGATCCCTGACTTGCGTATTCTGCCTCTCCGACCGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13046721 original size:158 final size:157
Alignment explanation
Indices: 13046468--13046860 Score: 367
Period size: 158 Copynumber: 2.5 Consensus size: 157
13046458 ATGCATTCTA
* * * * * * *
13046468 CCTCTCCAGTCGGCTGAGTACCCGCACGCCCATTTCATGGGTTGTCCTAGGCATAGGGAGTTCAT
1 CCTCT-CAGTCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** * * ** * ** *
13046533 TCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAACGGGACCGGTAGCACGCAGAGGGGGA
65 TCCATGTCTAAGACCCAAACGGACCAAGGGTTACGGCAACAGGACCAATAGCACACAG-GGGGGA
* ** *
13046598 CCGAGCCGAAGCGTAGTTTGCGCATTATG
129 CCGAGCCGAACCCCAGCTTGCGCATTATG
*
13046627 CCTCTCAGTCGGCTCAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
1 CCTCTCAGTCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
13046692 CC-TAGTCTAAGATCGAAATGGACCAAGGGTTACGGCAGCAGGATCAATAGCACACAGGGGGGAC
66 CCAT-GTCTAAGACCCAAACGGACCAAGGGTTACGGCAACAGGACCAATAGCACACAGGGGGGAC
* * * * *
13046756 CGGGCTGATCCCCAGCTTGTGCATTCTG
130 CGAGCCGAACCCCAGCTTGCGCATTATG
* * * * * * *
13046784 CCTCTCCGACCGGCTGAGCGCCCTCACGCTCGTATT-GTGGGTTGGCTTAGGCATACGAAGTTCA
1 CCTCTCAG-TCGGCTGAGTGCCCACACGCTCAT-TTCGTGGGTTGACTTAGGCATACGGAGTTCA
13046848 TTCCATGTCTAAG
64 TTCCATGTCTAAG
13046861 CATATGGAGT
Statistics
Matches: 189, Mismatches: 41, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 34 0.18
158 147 0.78
159 8 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CCTCTCAGTCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCATGTCTAAGACCCAAACGGACCAAGGGTTACGGCAACAGGACCAATAGCACACAGGGGGGACC
GAGCCGAACCCCAGCTTGCGCATTATG
Found at i:13047420 original size:367 final size:342
Alignment explanation
Indices: 13046645--13047950 Score: 925
Period size: 343 Copynumber: 3.7 Consensus size: 342
13046635 TCGGCTCAGT
* * * * ** *
13046645 GCCCACACGCTCATTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCGA
1 GCCCGCACGCTCGTTTCATGGGTTAG-CTTAGGCATAGGGAGTTCA-TCCAT-GTCTAAGCCCCA
** * * * * * * * **
13046708 AATGGACCAAGGGTTACGGCAGCAGGATCAATAGCACACAG-GGGGGACCGGGCTGATCCCCAGC
63 GCTGGACCAACGGTTATGGCAGCGGGACCAATAGCACGCAGAGAGGGACCGGGCTAATCCCTGGC
* * * * * * * * * *
13046772 TTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCTCACGCTCGTATT-GTGGGTTGGCTTAGGC
128 TTGCGCATTATGCCTCTCAGACCGACTCAGCACCCGCACGCTCGT-TTCATGGGTTGACTTAAGC
* * * * *
13046836 ATACGAAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCC-GAC
192 ATACGAAGTTCATCCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCA-AACCGGAC
* * * * * ** ** *
13046899 CGAGGGTTGTGGCAGTAGGACCAGCAGCAGGATCGATAGCATGCGGGGGGGGACCTAGGCCG-TC
255 CGA---CTGTTGC---A--A-CA--A-CAAGATTGACAGCACAC-AAGGGGGACC-GGGCCGATC
** **
13046963 CCCAACTTGCGCATTCTGCCTCTCC-AGCCGACTGAAT
306 CCCAACTTGCGCATTCTGCCTCTCCGA-TAGACTGAGC
* * * * *
13047000 GCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATGCCATGTCTAAGCCCCAG-
1 GCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCAT-CCATGTCTAAGCCCCAGC
* * * * *
13047064 TCGGACCAACGGTTATGGCAATAAGACTGGCAGTGGGATCAATAGCACGTAGAGGGGGA-TGGGT
65 T-GGACCAACGGTTATGGC------A---GC---GGGACCAATAGCACGCAGAGAGGGACCGGGC
* *
13047128 TGAT-CCTCGGCTTGCGCATTATGCCTCTCAGGCCGACCTCTCCAGCCGGCTGAGCACC-CACAT
117 TAATCCCT-GGCTTGCGCATTATGCCTCTCAGACCGA---CT-CA----GC--A-C-CCGCAC--
* * *
13047191 GCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
167 GCTCGTTTCATGGGTTGACTTAAGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
* * * ** * *
13047256 CCTAGTCTAAAATCGAATCGGACCGACTGTTGCAACAACAAGATTGGTAGTA-AGCAGGGGGGAC
232 CCCAGTCTAAAATCAAACCGGACCGACTGTTGCAACAACAAGATTGACAGCACA-CAAGGGGGAC
* * ** *
13047320 CGGGCCGATCCGCAACTTGCGCATTTTGCCTCTTTGATAGATTGAGC
296 CGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGATAGACTGAGC
* *
13047367 GCCTGCACGCTCGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCA-TCCATGTCTAAGCCCCAGC
* * *
13047432 TGGACCAAGGGTTATGGCAGCGGGACCAGTAGCACGCAGAGAGGGACCGGGCTAATCCCTGGTTT
65 TGGACCAACGGTTATGGCAGCGGGACCAATAGCACGCAGAGAGGGACCGGGCTAATCCCTGGCTT
* *
13047497 GCGCATTATGGCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAAGCATA
130 GCGCATTATGCCTCTCAGACCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAAGCATA
* * *
13047562 CGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGT
195 CGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAAACCGGACCGACT
** * * *
13047627 GTTGCGGCAGCAGGATTGACAGCACACAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGC
260 GTTGCAACAACAAGATTGACAGCACACAAGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGC
* *
13047692 CTCTCCGATCGGCTGAGC
325 CTCTCCGATAGACTGAGC
* * * *
13047710 GCCCGCATGCCCGTTTCATTGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
1 GCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCA-TCCATGTCTAAGCCCCAGC
* * * ** * * * * * * * *
13047775 TGGACCGAGGGTTATGGTAGCGGGACCAGCAGTATGTAGAGGGGGATCGGGTCGATTCCC-GTCT
65 TGGACCAACGGTTATGGCAGCGGGACCAATAGCACGCAGAGAGGGACCGGG-CTAATCCCTGGCT
* * * * * * * * *
13047839 TGCGCATTATGCCTTTCCGACCGACTGAGC-GCCGTACGCTCGTTTCGTAGGTTGGCTTAGGCAT
129 TGCGCATTATGCCTCTCAGACCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAAGCAT
* * *
13047903 ACGAAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAA
194 ACGAAGTTCATCCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAA
13047951 GATTTTGAGC
Statistics
Matches: 780, Mismatches: 125, Indels: 105
0.77 0.12 0.10
Matches are distributed among these distances:
341 3 0.00
342 69 0.09
343 279 0.36
344 9 0.01
345 4 0.01
346 1 0.00
348 2 0.00
352 2 0.00
353 2 0.00
354 2 0.00
355 87 0.11
356 32 0.04
357 3 0.00
358 2 0.00
361 2 0.00
364 2 0.00
366 7 0.01
367 153 0.20
368 20 0.03
369 1 0.00
370 2 0.00
371 3 0.00
372 1 0.00
374 1 0.00
375 2 0.00
377 5 0.01
378 4 0.01
379 6 0.01
380 71 0.09
381 3 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (342 bp):
GCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATCCATGTCTAAGCCCCAGCT
GGACCAACGGTTATGGCAGCGGGACCAATAGCACGCAGAGAGGGACCGGGCTAATCCCTGGCTTG
CGCATTATGCCTCTCAGACCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAAGCATAC
GAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAAACCGGACCGACTG
TTGCAACAACAAGATTGACAGCACACAAGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCC
TCTCCGATAGACTGAGC
Found at i:13047584 original size:26 final size:26
Alignment explanation
Indices: 13047554--13047609 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
13047544 TGGGTTGACT
13047554 TAAGCATACGAAGTTCATCCCCAATC
1 TAAGCATACGAAGTTCATCCCCAATC
* * *
13047580 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAATC
13047606 TAAG
1 TAAG
13047610 ATCAAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAATC
Found at i:13047844 original size:343 final size:342
Alignment explanation
Indices: 13047180--13047953 Score: 989
Period size: 343 Copynumber: 2.3 Consensus size: 342
13047170 CAGCCGGCTG
* * *
13047180 AGCACCCACATGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAATCTAAGCATA
1 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATA
* * * * ** *
13047245 CGGAGTTCATTCCTAGTCTAAAATCGAATCGGACCGACTGTTGCAACAACAAGATTGGTAGTAAG
66 CGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGACTGTTGCAACAACAAGATTGACAGCAAG
* * * ** * *
13047310 CAGGGGGGACCGGGCCGATCCGCAACTTGCGCATTTTGCCTCTTTGATAGATTGAGCGCCTGCAC
131 CAAGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGATAGACTGAGCGCCCGCAC
* * *
13047375 GCTCGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAGCTGGACCAA
196 GCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAACTGGACCAA
* *
13047440 GGGTTATGGCAGCGGGACCAGTAGCACGCAGAGAGGGACCGGGCTAATCCCTGGTTTGCGCATTA
261 GGGTTATGGCAGCGGGACCAGCAGCACGCAGAGAGGGACCGGGCGAATCCC-GGTTTGCGCATTA
*
13047505 TGGCTCTCCGACCGACTC
325 TGCCTCTCCGACCGACTC
* *
13047523 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGAAGTTCATCCCCAATCTAAGCATA
1 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATA
* * ** * *
13047588 CGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGTGTTGCGGCAGCAGGATTGACAGCACA
66 CGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGACTGTTGCAACAACAAGATTGACAGCA-A
* * *
13047653 -CAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA
130 GCAAGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGATAGACTGAGCGCCCGCA
* * * *
13047717 TGCCCGTTTCATTGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCG
195 CGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAACTGGACCA
* * * * * * *
13047782 AGGGTTATGGTAGCGGGACCAGCAGTATGTAGAGGGGGATCGGGTCGATTCCC-GTCTTGCGCAT
260 AGGGTTATGGCAGCGGGACCAGCAGCACGCAGAGAGGGACCGGG-CGAATCCCGGT-TTGCGCAT
* *
13047846 TATGCCTTTCCGACCGACTG
323 TATGCCTCTCCGACCGACTC
* * * * * *
13047866 AGC-GCCGTACGCTCGTTTCGTAGGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCAT
1 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAAGCAT
*
13047929 ACGGAGTTCATTCCCAATCTAAGAT
65 ACGGAGTTCATTCCCAGTCTAAGAT
13047954 TTTGAGCCAC
Statistics
Matches: 371, Mismatches: 56, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
341 3 0.01
342 74 0.20
343 287 0.77
344 7 0.02
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (342 bp):
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGACTGTTGCAACAACAAGATTGACAGCAAG
CAAGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGATAGACTGAGCGCCCGCAC
GCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAACTGGACCAA
GGGTTATGGCAGCGGGACCAGCAGCACGCAGAGAGGGACCGGGCGAATCCCGGTTTGCGCATTAT
GCCTCTCCGACCGACTC
Found at i:13047949 original size:26 final size:26
Alignment explanation
Indices: 13047899--13047951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13047889 GTTGGCTTAG
*
13047899 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
13047925 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
13047951 G
1 G
13047952 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:13049133 original size:26 final size:26
Alignment explanation
Indices: 13049094--13049145 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13049084 TAGCTTAGGC
*
13049094 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTGCATTCCCA-GTCTAAGA
13049120 ATACGGAGTGCATTCCCAGTCTAAGA
1 ATACGGAGTGCATTCCCAGTCTAAGA
13049146 TCATATCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
ATACGGAGTGCATTCCCAGTCTAAGA
Found at i:13049445 original size:26 final size:26
Alignment explanation
Indices: 13049409--13049461 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13049399 GTTGACTTAG
* *
13049409 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13049435 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13049461 G
1 G
13049462 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13049782 original size:26 final size:26
Alignment explanation
Indices: 13049752--13049804 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13049742 GTTGGCTTAG
*
13049752 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
13049778 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13049804 G
1 G
13049805 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13050900 original size:159 final size:156
Alignment explanation
Indices: 13050665--13051116 Score: 473
Period size: 159 Copynumber: 2.9 Consensus size: 156
13050655 GGGTTATGGC
* * * * * *
13050665 AGTAGGATCGATAGCACGTA-AGGGGACCGGGCCGATCCACGGCTTGA-GCATTCTGTCTCTCCG
1 AGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTT-ACGCATTCTGCCTCTCCG
* *
13050728 ACAGGCTGAGCGCCCCTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTC
65 ACCGGCTGAGCGCCCC-ACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTC
** * *
13050793 TAAGCCCTAGTTC-AACCGATGGTTGTGGT
129 TAAGCCC-A-ACCGAACCGAGGGTTGCGGT
* * * *
13050822 AGTGGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTGTCCG
1 AGTAGGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCG
* * * * * *
13050887 ACCGGCTCAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACA-GAGTTCATTATCA-A
65 ACCGGCTGAGCGCC-CCACGCTCGTTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATT-CCATG
* *
13050950 TCTAAGATCCAACCGGACCGAGGGTTGCGGT
127 TCTAAG-CCCAACCGAACCGAGGGTTGCGGT
* * * * *
13050981 AGTAGGATCGACAGCACGTAGGGGAGACCCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTG
1 AGTAGGATCGACAGCACGCAGGGGGGA-CCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCG
* * *
13051046 ACCCGGCTGAGCGCCCGCACGCTCATTTCACGGGTTGGCTTAGGCATATGGAGTTCATTCCATGT
65 A-CCGGCTGAGCGCCC-CACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
13051111 CTAAGC
128 CTAAGC
13051117 ATACGGAGTT
Statistics
Matches: 239, Mismatches: 43, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
157 16 0.07
158 7 0.03
159 156 0.65
160 60 0.25
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
AGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
CCGGCTGAGCGCCCCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
AGCCCAACCGAACCGAGGGTTGCGGT
Found at i:13051118 original size:26 final size:26
Alignment explanation
Indices: 13051089--13051140 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13051079 GTTGGCTTAG
*
13051089 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13051115 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13051141 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13051856 original size:26 final size:26
Alignment explanation
Indices: 13051818--13051869 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13051808 GTTGACCTAG
*
13051818 GCATATGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
13051844 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
13051870 AATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:13052349 original size:26 final size:26
Alignment explanation
Indices: 13052319--13052371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13052309 GTTGGCTTAG
*
13052319 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13052345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13052371 G
1 G
13052372 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13052722 original size:26 final size:26
Alignment explanation
Indices: 13052686--13052738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13052676 GTTGACTTAG
13052686 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13052712 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13052738 G
1 G
13052739 ATCAGCAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13053214 original size:26 final size:26
Alignment explanation
Indices: 13053184--13053262 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
13053174 GTTGGCTTAG
*
13053184 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13053210 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13053236 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
13053262 G
1 G
13053263 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13053597 original size:158 final size:157
Alignment explanation
Indices: 13053236--13053744 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 157
13053226 CCATGTCTAA
* * * *
13053236 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-TTCCAGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTTACAGTAG-AGGACCGAC
* * *
13053300 AGCACGCAGGGGGGACCGGGCCAATTCCCAGCTTGCGCATTTGCCTCTCCGGCCGGCTGAGCGCC
65 AGCACGCAGGGGGGACCGGGCCAATTCCCAACTTGCGCATTTGCCTCTCCGGCCGGCTCAGCACC
* *
13053365 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCCCGTTTCATGGGTTGACTTAG
* ** ** *
13053393 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTCATCGGATCGAGGGTTGTGACAGT-G-GGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTT-T-ACAGTAGAGGACCG
* *** *
13053455 ACAGCACGCAGAGGGGGATCGGGTTGATTCCCAACTTG-GGATTATGCCTCTCCGGCCGGCTCAG
63 ACAGCACGCAG-GGGGGACCGGGCCAATTCCCAACTTGCGCATT-TGCCTCTCCGGCCGGCTCAG
* **
13053519 CACCTGCACGCTTGTTTCATGGGTTGACTTAG
126 CACCCGCACGCCCGTTTCATGGGTTGACTTAG
* * * * *
13053551 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGG-TTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTTACAGTAG-AGGACCGAC
* ** * ** * * ** * ** * * **
13053615 AGTACATAGGGGGGACCCGATCGA-TCCTCGACTTATGCATTCTGCCTCACCGATCGACTGAGTG
65 AGCACGCAGGGGGGACCGGGCCAATTCC-CAACTTGCGCATT-TGCCTCTCCGGCCGGCTCAGCA
* * * * *
13053679 CCCGTACGCTCGATTCGTGGGTTGGCTTAG
128 CCCGCACGCCCGTTTCATGGGTTGACTTAG
13053709 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCG
13053745 AACCGATGGT
Statistics
Matches: 280, Mismatches: 59, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
155 3 0.01
156 8 0.03
157 74 0.26
158 186 0.66
159 5 0.02
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTTACAGTAGAGGACCGACA
GCACGCAGGGGGGACCGGGCCAATTCCCAACTTGCGCATTTGCCTCTCCGGCCGGCTCAGCACCC
GCACGCCCGTTTCATGGGTTGACTTAG
Found at i:13053706 original size:525 final size:524
Alignment explanation
Indices: 13052686--13053735 Score: 1312
Period size: 525 Copynumber: 2.0 Consensus size: 524
13052676 GTTGACTTAG
*
13052686 GCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGCAGCACG
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGCAGCACG
* * * * *
13052751 CAGGGCCTGGTGCAGGATCGGCAGCACGCAGGGGGGGCTGGGCCAATCCCCGGCTTGCACATTCT
66 CAGGGCCTAGTGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCACATTCT
* * *
13052816 GCCTCTCCGGTCGGCTAAGCGCCCGCACGCCTGTTTTGTGGGTTGGCTTAGGCATAGGAAGTTCA
131 GCCTCTCCGGCCGGCTAAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCA
* * * *
13052881 TTCCACGTCTAAGCCCCAGCCGGATTGAGGGTTGTTGCAGCGGGATCGATAGCGCACAGAGGAGG
196 TTCCACGTCTAAGCCCCAGCCGGATCGAGGGTTGTTGCAGCGGGACCGACAGCACACAGAGGAGG
* * * * *
13052946 ATCGGGCCAATCCCTAGCTTGCGCATTATGCCTCTTCGGCCGACTCAGCGCTTGCACGGTCGTTT
261 ATCGGGCCAATCCCTAACTTGCGCATTATGCCTCTCCGGCCGACTCAGCACCTGCACGCTCGTTT
** * * * * *
13053011 TGTGTGTTGACTTATGCATATAGAGTTCAATCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGCG
326 CATGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCGATCTGAGGGTTACG
* * * ** * * * *
13053076 GCAGCAGGATTGACAGCACGTAGGGGGGACCAGGCCAATCCGTGGGTTGCGTATTCTACCTCTCT
391 GCAGCAGGATCGACAGCACATAGGGGGGACCAGACCAATCCGTGACTTACGCATTCTACCTCACC
*
13053141 GTCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
456 GTCCAGCTGAGCGCCCGCACGCTCGATTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
13053206 CTAA
521 CTAA
* * * *
13053210 GCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
1 GCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CAGCA
* *
13053274 C-CGAGGGTTCC-AGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATTCCCAGCTTGCG
64 CGC-AGGG--CCTAGT-GCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCA
* *
13053337 CATT-TGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
125 CATTCTGCCTCTCCGGCCGGCTAAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGA
* * * *
13053401 AGTTCATTCCATGTCTAAGCCCTCA-TCGGATCGAGGGTTG-TGACAGTGGGACCGACAGCACGC
190 AGTTCATTCCACGTCTAAGCCC-CAGCCGGATCGAGGGTTGTTG-CAGCGGGACCGACAGCACAC
* ** * * *
13053464 AGAGGGGGATCGGGTTGATTCCC-AACTTG-GGATTATGCCTCTCCGGCCGGCTCAGCACCTGCA
253 AGAGGAGGATCGGG-CCAATCCCTAACTTGCGCATTATGCCTCTCCGGCCGACTCAGCACCTGCA
* *
13053527 CGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-
317 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACC-GATCT
* * * * * *
13053591 GAGGGTTACGGCAGTAGGATCGACAGTACATAGGGGGGACCCGATCGATCC-TCGACTTATGCAT
381 GAGGGTTACGGCAGCAGGATCGACAGCACATAGGGGGGACCAGACCAATCCGT-GACTTACGCAT
* * * * * *
13053655 TCTGCCTCACCGATCGA-CTGAGTGCCCGTACGCTCGATTCGTGGGTTGGCTTAGGCATACGGAG
445 TCTACCTCACCG-TCCAGCTGAGCGCCCGCACGCTCGATTCATGGGTTGGCTTAGGCATACAGAG
13053719 TTCATTCCATGTCTAA
509 TTCATTCCATGTCTAA
13053735 G
1 G
13053736 ATCAGACCGA
Statistics
Matches: 447, Mismatches: 67, Indels: 23
0.83 0.12 0.04
Matches are distributed among these distances:
523 3 0.01
524 53 0.12
525 206 0.46
526 130 0.29
527 55 0.12
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (524 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGCAGCACG
CAGGGCCTAGTGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCACATTCT
GCCTCTCCGGCCGGCTAAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCA
TTCCACGTCTAAGCCCCAGCCGGATCGAGGGTTGTTGCAGCGGGACCGACAGCACACAGAGGAGG
ATCGGGCCAATCCCTAACTTGCGCATTATGCCTCTCCGGCCGACTCAGCACCTGCACGCTCGTTT
CATGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCGATCTGAGGGTTACG
GCAGCAGGATCGACAGCACATAGGGGGGACCAGACCAATCCGTGACTTACGCATTCTACCTCACC
GTCCAGCTGAGCGCCCGCACGCTCGATTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
CTAA
Found at i:13054093 original size:26 final size:26
Alignment explanation
Indices: 13054063--13054115 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13054053 GTTGACTTAG
*
13054063 GCATACGGAGTTCAT-CCCTAGTCTAA
1 GCATACGGAATTCATACCC-AGTCTAA
13054089 GCATACGGAATTCATACCCAGTCTAA
1 GCATACGGAATTCATACCCAGTCTAA
13054115 G
1 G
13054116 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATACCCAGTCTAA
Found at i:13054508 original size:158 final size:156
Alignment explanation
Indices: 13054089--13054588 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 156
13054079 CCTAGTCTAA
* * * * * *
13054089 GCATACGGAATTCATACCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGAGCAAGATCGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCAGGATCGACAG
* * * * * * *
13054154 CACGTAGGGGGGACTGGGCTGATCCC-CGACTTGCCCATTCTGCCTCTCCGATCGGCTTAGCGCC
66 CACG-AAGGGGGACCGGGCTGATCCCTAG-CTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCGCC
** **
13054218 CATACGCCCATTTCGTGGGTTGGCTTAG
129 CGCACGCTTATTTCGTGGGTTGGCTTAG
* * ** * *
13054246 GCATAGGGAGTTCGTT-CCACGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGC-GAGATC-
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTG-CGCAGCAG-GATCG
* * * * *
13054307 AGCAGCACGCAGAGGGGACCGGGCTGAT-CCTCGGCTTACGCATTATGCCTCTTCGGCCGGCTCA
62 A-CAGCACGAAG-GGGGACCGGGCTGATCCCT-AGCTTGCGCATTCTGCCTCTTCGGTCGGCTCA
* * * *
13054371 GCACCCGCACGCTTGTTTCGTGGGTTGACTTAT
124 GCGCCCGCACGCTTATTTCGTGGGTTGGCTTAG
*
13054404 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCAGGATCGACA
* * * *
13054469 GC-CTGAAAGGGGGACCGGGCTGATCCCTAGTTTGTGCATTCTGCCTC-TCTGGTCGGCTGAGTG
65 GCAC-G-AAGGGGGACCGGGCTGATCCCTAGCTTGCGCATTCTGCCTCTTC-GGTCGGCTCAGCG
* *
13054532 CCTGCACGGCTTATTTTC-TGGCTTGGCTTAG
127 CCCGCAC-GCTTA-TTTCGTGGGTTGGCTTAG
**
13054563 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13054589 CATTTTGAGC
Statistics
Matches: 269, Mismatches: 55, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
156 3 0.01
157 42 0.16
158 171 0.64
159 49 0.18
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCAGGATCGACAG
CACGAAGGGGGACCGGGCTGATCCCTAGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCGCCCG
CACGCTTATTTCGTGGGTTGGCTTAG
Found at i:13056368 original size:160 final size:156
Alignment explanation
Indices: 13055995--13056537 Score: 482
Period size: 158 Copynumber: 3.4 Consensus size: 156
13055985 TTGAGGGGGC
* *
13055995 CAGCTGAGCGCCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1 CAGCTGAGCGCCCGCACG-TCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTA
* * * *
13056060 AGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAAGGGGGACCGGGCCGATC
64 AGACCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGACCGGGCCGATC
* * *
13056125 CCCGGCTTGTGCACTCTGCCTCTCTGAT
129 CCCGGCTTGCGCACTATGCCTCTCCGAT
* * * * *
13056153 CGGTTGAGCGCCCGCACGCCAGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
1 CAGCTGAGCGCCCGCACGTCA-TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTA
* * * * *
13056218 AGACCCAG-CCAAATCGAGGGTTGTGGCTGCAGGATCGGCAGCACGCAGAGAGGGACCGGGCTGA
64 AGA-CCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-AGAGGGACCGGGCCGA
* * *
13056282 TCCCTGTGCTTGCGCATTATGCCTCTCCGGT
127 TCCCCG-GCTTGCGCACTATGCCTCTCCGAT
* * *
13056313 CAGCTCAGCGCCCGCACGTTC-TTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGCCT
1 CAGCTGAGCGCCCGCACG-TCATTTT-GTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCT
*** * * * * * * ** * * * *
13056377 AAGATTGGATCAAACTGAGGGTTGCAGTAGCAGAATCGATAGCACATAGGTGGGATCGGGTCGAT
63 AAGACCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGACCGGGCCGAT
* * * * *
13056442 CCCCAGCTTACGCATTCTACCTCTCCGAT
128 CCCCGGCTTGCGCACTATGCCTCTCCGAT
* * * * *
13056471 -TGACTGAGCGCCCACACGCTC-TTTCCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTC
1 CAG-CTGAGCGCCCGCACG-TCATTT-TGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTC
13056534 TAAG
62 TAAG
13056538 CATACAGAGT
Statistics
Matches: 308, Mismatches: 65, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
157 9 0.03
158 158 0.51
159 42 0.14
160 95 0.31
161 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
CAGCTGAGCGCCCGCACGTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAG
ACCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGACCGGGCCGATCCC
CGGCTTGCGCACTATGCCTCTCCGAT
Found at i:13056549 original size:26 final size:26
Alignment explanation
Indices: 13056513--13056563 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13056503 TGGCTTAGGT
*
13056513 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCAT-TCTAAGC
13056539 ATACAGAGTTCATTCCCATTCTAAG
1 ATACAGAGTTCATTCCCATTCTAAG
13056564 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCATTCTAAGC
Found at i:13057769 original size:26 final size:26
Alignment explanation
Indices: 13057739--13057788 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13057729 AGCTTAGGCG
13057739 TACGGAGTTCATT-CCACGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
13057765 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13057789 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:13057903 original size:184 final size:184
Alignment explanation
Indices: 13057586--13057947 Score: 469
Period size: 184 Copynumber: 2.0 Consensus size: 184
13057576 AGGCATATGA
* * ** * *
13057586 AGTTCATTTCCAGTCTAAGATTGGACTAGACCGAGGGTTGCAGCAGTAGGATCGATAGCACATAG
1 AGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGTAAAATCGACAGCACACAG
* * * * *
13057651 GGGGGATCGGGCTGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCACCCGTATGCT
66 GGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCT
*
13057716 CGTTTCATGGGTTAGCTTAGGCGTACGGAGTTCATTCCACGTCTAAGCATACGG
131 CGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGG
* * **
13057770 AGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGTAAAATCGACAGCATGCA
1 AGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCAGCAGTAAAATCGACAGCACACA
* * * *
13057834 GGGGGGATCAGGCCGATCCTC-GACTTGCGCATTCTGCCTCTCTGGCCTG-CTGAGCGCCCGCAC
65 GGGGGGATCAGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGACC-GACTGAGCACCCGCAC
* * *
13057897 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 GCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
13057948 CCTAGCCGGA
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.01
184 149 0.98
185 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGTAAAATCGACAGCACACAG
GGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCT
CGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGG
Found at i:13058141 original size:26 final size:26
Alignment explanation
Indices: 13058104--13058156 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13058094 GTTGATTTAG
* *
13058104 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13058130 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13058156 G
1 G
13058157 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13060421 original size:26 final size:26
Alignment explanation
Indices: 13060391--13060443 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13060381 GTTGACTTAG
13060391 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13060417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13060443 G
1 G
13060444 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13060867 original size:852 final size:848
Alignment explanation
Indices: 13059415--13061810 Score: 2498
Period size: 852 Copynumber: 2.8 Consensus size: 848
13059405 GGACGAAGGC
* * ** * * *
13059415 TTGTGGCAGCAGGACC-AGCAGCAGGATCGATAGAACGCAG-GGGGTGATCGGGCCGATCCCCGG
1 TTGTGGCAGCAAGACCGA-CAGCAGAATCGCCAGCACGCAGAGGGG-GACCGGGCAGATCCCCGG
* *** * *
13059478 CTTACGCATTCTGCCTCTCCGGCCAACTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTAGGC
64 CTTACGCATTATGCCTCTCCGGCCGGTTGACCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * * * *
13059543 ATATGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCGCACCCA
129 ATACGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA
* *
13059608 GGGTTGCGAC-GTAGGATCA-GCAGCACGCAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTC
194 GGGTTGCGACAGTAGGAT-AGGCAGCACGTAGAGGGGATC-GGCCGATCCCCGGCTTGCGCATTC
* * * *
13059671 TACCTCTCTGGCC-AGCTTAGCGCCCGCATGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTT
257 TACCTCTCTGACCGA-CTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
* * * * *
13059735 CATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGTGGGACCGACAGCACGTAGAGGG
321 CATTCCATGTCTAAGCCCC-AGCGAACTGAGGGTTGTGGCAG-CGGA-CGACAGCACGCAGAGGG
* * * * *
13059800 GGATCGGTGC-GATCCCCGGCTTGCGCACTATGCCCCTAC-GATCGGTTCA-TCACCCGAACGCT
383 GGATCAG-GCTGATCCCCGGCTTGCGCATTATGCCTCT-CTGATCGGCTCAGT-GCCCGAACGCT
** * * * *
13059862 CGTTTCGAAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTATGATCAGACCGGACCGAGGT
445 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG
* * * * * *
13059927 TTGC-AGCAGCAAGATCGACAGCACGTAGGGGGGATC-GAGCCAGTCTCCTACTTGCGCATTCTG
510 TTGCGA-CAGCAGGATCGACAGCAC-CAGGGGGGACCGGA-TCAGTCCCCAACTTGCGCATTCTG
* ** *
13059990 CCTCTCCGA-CAGACTGAGCGCCCGCACGCTCATTTTGTGGGTTAGCTTAGGCATACGGAGTTCA
572 CCTCTCCGATC-GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * **
13060054 TTGCATGTCTAAGCATACGGAGTTCATTCTCAATCTAAGATCGGATCGGACTGAGGGTTACGGCA
636 TTCCATGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCGGATCGGACTGAGGGTTACAACA
* * * *
13060119 GTAGGA-C-AAGCA-GCAAGATGGGACCGGGCTGAT-CCCAGCTTGTGCATTCTGCCTCTCCGGT
700 GCAGGATCGAAGCACGCAAGAGGGGA-CAGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGT
* ** * *
13060180 CGAATAAGCACCCGCATGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
764 CGAATAAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
*
13060245 AGCCCTAGCCAGACCGAGGG
829 AGCCCCAGCCAGACCGAGGG
* * * * *
13060265 TTGTGGCAGCAGGACCGACAGC-GAGATCGCCAGCACGTAGAGGGGGACTGGGCAGATCCACGGA
1 TTGTGGCAGCAAGACCGACAGCAGA-ATCGCCAGCACGCAGAGGGGGACCGGGCAGATCCCCGGC
* * *
13060329 TTGCGCATTATGCCTCTCCGGCCGGTTGACCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCA
65 TTACGCATTATGCCTCTCCGGCCGGTTGACCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
** *
13060394 TACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGA
130 TACG-AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA
* * * * * *
13060459 GGGTTGCGGCAGTAGGATAGGCAGCACGTAGGGGGGACCGAGCCGATCCCTGGCTCGCACATTCT
194 GGGTTGCGACAGTAGGATAGGCAGCACGTAGAGGGGATCG-GCCGATCCCCGGCTTGCGCATTCT
* * * **
13060524 AACTCTCTGACCGACTGAGTGCCCGCACCCCCATTTCATGATTTGGCTTAGGCATAGGGAGTTCA
258 ACCTCTCTGACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
* * *
13060589 TTCCATGTCTAATCCCTAGCTGAACTGAGGGTTGTGGCAGCAGGACTGACAGCACACAGAGGGGG
323 TTCCATGTCTAAGCCCCAGC-GAACTGAGGGTTGTGGCAGC-GGAC-GACAGCACGCAGAGGGGG
* ** * * * *
13060654 ATCAGGCTAATCCTTGGC-TGCGCATTATGCTTCTCTGATCGACTCAGTGCCCGCACGCTCATTT
385 ATCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGATCGGCTCAGTGCCCGAACGCTCGTTT
*
13060718 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCG
450 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
* *
13060783 ACAGCTGGATCGACAGCACACAGGAGGGGACCGGATCAGTCCCCAACTTGCGCATTTTGCCTCTC
515 ACAGCAGGATCGACAGCAC-CAGG-GGGGACCGGATCAGTCCCCAACTTGCGCATTCTGCCTCTC
*
13060848 CGATCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
578 CGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* ** ** * ** *
13060913 TCTAAGGATACGGAGTTTGTTCCTAGTAGAAGATTGGATCGGACCAAGGGTTGCAACAGCAGGAT
643 TCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGATCGGACTGAGGGTTACAACAGCAGGAT
* * * * * ** *
13060978 CGGCAGCACGCAGGGGGGGATAGGCCGATCCCCATCTTGTGCATTCTGCCTCTCCGGTCGGCTGA
707 C-GAAGCACGCAAGAGGGGACAGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGAATAA
*
13061043 GCACCCGCACGCCCGTTTCGTGGGTTGGGTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCA
771 GCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCA
13061108 GCCAGACCGAGGG
836 GCCAGACCGAGGG
** * * * * *
13061121 TTGTGGCAGCAAGACCGGTAGCAGAATCGGCAGCATGCATAGGGGGACCGGTCTA-ATCCCCAGC
1 TTGTGGCAGCAAGACCGACAGCAGAATCGCCAGCACGCAGAGGGGGACCGGGC-AGATCCCCGGC
* * * * * * **
13061185 TCATGCATTATGCCTTTTCGACCGGCCTCTCCAGTCGGCTGAGCACTCGCACGCTCGTTTTGTGG
65 TTACGCATTATGCCTCTCCGGCCGG--T-T---GAC--C---GC-C-CGCACGCTCGTTTCATGG
13061250 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
117 GTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
13061315 CAGACCGGATCGAGGGTTACGACAGTAGGATCGGTAGCACGTAAAAGGGATCGGGCGATCCCCGG
181 CAGACCGGATCGAGGGTTGCGACAGTAGGATAGGCAGCACGTAGAGGGGATCGGCCGATCCCCGG
* * * *
13061380 CTTGCGCATTCTACCTCT-TCGTCAG-TTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
246 CTTGCGCATTCTACCTCTCT-GACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGG
*
13061443 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAA---A---------C--CGG-C-A-A-CAC
310 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGAACTGAGGGTTGTGGCAGCGGACGACAGCAC
* * * ** * *
13061490 GCAGAGGGGGA-CCGGGTCGATCCCCGGCTTGCTCATTATGCCTCTCTGGCCGGCTCAGCGCCCA
375 GCAGAGGGGGATCAGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCTGATCGGCTCAGTGCCCG
* * *
13061554 AATGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
439 AACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
* * * ** * * * *
13061619 CGAAGGTTGTGACAGCAGGATCGATAGCACGTGGGGGGGATCAGG-TCGGTCCCCGACTTGTGCA
504 CGAGGGTTGCGACAGCAGGATCGACAGCAC-CAGGGGGGA-CCGGATCAGTCCCCAACTTGCGCA
* * * * * *
13061683 TTCTGCCACTCCGGTCAGTTGAACGCCCGCACAG-TCGTTTCATGGGTTGGCTTAGGCATACGGA
567 TTCTGCCTCTCCGATCGGCTGAGCGCCCGCAC-GCTCATTTCATGGGTTGGCTTAGGCATACGGA
** * * *
13061747 GTTCATTCCATGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
631 GTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGATCGGACTGAGGGTT
13061811 GCAGCGGCAA
Statistics
Matches: 1281, Mismatches: 219, Indels: 96
0.80 0.14 0.06
Matches are distributed among these distances:
845 4 0.00
846 143 0.11
847 122 0.10
848 1 0.00
849 1 0.00
850 106 0.08
851 186 0.15
852 300 0.23
853 5 0.00
854 1 0.00
855 10 0.01
856 176 0.14
857 3 0.00
858 1 0.00
859 1 0.00
862 2 0.00
863 1 0.00
864 1 0.00
866 2 0.00
867 66 0.05
868 29 0.02
869 119 0.09
870 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (848 bp):
TTGTGGCAGCAAGACCGACAGCAGAATCGCCAGCACGCAGAGGGGGACCGGGCAGATCCCCGGCT
TACGCATTATGCCTCTCCGGCCGGTTGACCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
GTTGCGACAGTAGGATAGGCAGCACGTAGAGGGGATCGGCCGATCCCCGGCTTGCGCATTCTACC
TCTCTGACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
CATGTCTAAGCCCCAGCGAACTGAGGGTTGTGGCAGCGGACGACAGCACGCAGAGGGGGATCAGG
CTGATCCCCGGCTTGCGCATTATGCCTCTCTGATCGGCTCAGTGCCCGAACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCA
GGATCGACAGCACCAGGGGGGACCGGATCAGTCCCCAACTTGCGCATTCTGCCTCTCCGATCGGC
TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACGGAGTTCATTCCAGTCTAAGATCGGATCGGACTGAGGGTTACAACAGCAGGATCGAAGCACG
CAAGAGGGGACAGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGAATAAGCACCCGCAC
GCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
GGG
Found at i:13060895 original size:159 final size:159
Alignment explanation
Indices: 13060417--13060918 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 159
13060407 CCCAGTCTAA
** *
13060417 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGA-TCGAGGGTTGCGGCAG-TAGGATAG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACT-GAGGGTTGCGGCAGCT-GGATCG
* ** * * * * * ** *
13060479 GCAGCACGTAGG-GGGGACC-GAGCCGATCCCTGGCTCGCACATTCTAACTCTCTGACCGACTGA
63 ACAGCACACAGGAGGGGACCGGATCAG-TCCCTGGCTTGCGCATTATGCCTCTCTGATCGACTGA
* * **
13060542 GTGCCCGCACCCCCATTTCATGATTTGGCTTAG
127 GTGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *** * * * *
13060575 GCATAGGGAGTTCATTCCATGTCTAATCCCTAGCT-GAACTGAGGGTTGTGGCAGCAGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGATCGGACTGAGGGTTGCGGCAGCTGGATC-GA
* * * * * *
13060638 CAGCACACA-GAGGGGGATCAGGCT-AATCCTTGGC-TGCGCATTATGCTTCTCTGATCGACTCA
64 CAGCACACAGGA-GGGGA-CCGGATCAGTCCCTGGCTTGCGCATTATGCCTCTCTGATCGACTGA
* *
13060700 GTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
127 GTGCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
13060733 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCTGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCTGGATCGAC
*** * * *
13060797 AGCACACAGGAGGGGACCGGATCAGTCCCCAACTTGCGCATTTTGCCTCTCCGATCGGCTGAGTG
65 AGCACACAGGAGGGGACCGGATCAGTCCCTGGCTTGCGCATTATGCCTCTCTGATCGACTGAGTG
13060862 CCCGCACGCTCATTTCATGGGTTGGCTTAG
130 CCCGCACGCTCATTTCATGGGTTGGCTTAG
13060892 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13060919 GATACGGAGT
Statistics
Matches: 271, Mismatches: 57, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
157 11 0.04
158 160 0.59
159 98 0.36
160 1 0.00
161 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCTGGATCGACA
GCACACAGGAGGGGACCGGATCAGTCCCTGGCTTGCGCATTATGCCTCTCTGATCGACTGAGTGC
CCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:13061052 original size:184 final size:185
Alignment explanation
Indices: 13060764--13061102 Score: 466
Period size: 184 Copynumber: 1.8 Consensus size: 185
13060754 TCTAAGATCA
** * * * *
13060764 GATCGGACTGAGGGTTGCGACAGCTGGATCGACAGCACACAGGAGGGGACCGGATCAGTCCCCAA
1 GATCGGACCAAGGGTTGCAACAGCAGGATCGACAGCACACAGGAGGGGACAGGACCAGTCCCCAA
* ** *
13060829 CTTGCGCATTTTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
66 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGC
*
13060894 ATACGGAGTTCATTCCATGTCTAAGGATACGGAGTTTGTTCCTAGTAGAAGATTG
131 ATACGAAGTTCATTCCATGTCTAAGGATACGGAGTTTGTTCCTAGTAGAAGATTG
* * * *
13060949 GATCGGACCAAGGGTTGCAACAGCAGGATCGGCAGCACGCAGGGGGGGATAGG-CC-GATCCCCA
1 GATCGGACCAAGGGTTGCAACAGCAGGATCGACAGCACACAGGAGGGGACAGGACCAG-TCCCCA
* * * * * *
13061012 TCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGGTTAGG
65 ACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGG
13061077 CATACGAAGTTCATTCCATGTCTAAG
130 CATACGAAGTTCATTCCATGTCTAAG
13061103 CCCCAGCCAG
Statistics
Matches: 132, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.01
184 87 0.66
185 44 0.33
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (185 bp):
GATCGGACCAAGGGTTGCAACAGCAGGATCGACAGCACACAGGAGGGGACAGGACCAGTCCCCAA
CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGC
ATACGAAGTTCATTCCATGTCTAAGGATACGGAGTTTGTTCCTAGTAGAAGATTG
Found at i:13061296 original size:26 final size:26
Alignment explanation
Indices: 13061260--13061312 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13061250 GTTGACTTAG
13061260 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13061286 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13061312 G
1 G
13061313 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13061977 original size:196 final size:196
Alignment explanation
Indices: 13061634--13062008 Score: 488
Period size: 196 Copynumber: 1.9 Consensus size: 196
13061624 GTTGTGACAG
** * ** *
13061634 CAGGATCGATAGCACGTGGGGGGGATCAGGTCGGTCCCCGACTTGTGCATTCTGCCACTCCGGTC
1 CAGGATCGATAGCACGCAGGGGGGATCAGGTCGATCCCCGACTTGCACATTCTGCCACTCCGATC
* *
13061699 AGTTGAACGCCCGCACAGTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 AGTTGAACGCCCGCACAGTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATACCATGTCTAA
*
13061764 GCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCGGCAAGACCAACA
131 GCATAAAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGCGGCAAGACCAACA
13061829 A
196 A
* * * *
13061830 CAGGATTGGTAGCACGCAGGGGGGATCGGGTCGATCCCC-AGCTTGCACATTCTGCCTCTCCGAT
1 CAGGATCGATAGCACGCAGGGGGGATCAGGTCGATCCCCGA-CTTGCACATTCTGCCACTCCGAT
** * * *
13061894 C-GATTGAACGCTTGCA-TGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCACCA-GT
65 CAG-TTGAACGCCCGCACAG-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-ACCATGT
** * *
13061956 CTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACTAGACTGAGGGTTGC
127 CTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGC
13062009 GACAGAAGGG
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
195 3 0.02
196 147 0.96
197 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (196 bp):
CAGGATCGATAGCACGCAGGGGGGATCAGGTCGATCCCCGACTTGCACATTCTGCCACTCCGATC
AGTTGAACGCCCGCACAGTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATACCATGTCTAA
GCATAAAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGCGGCAAGACCAACA
A
Found at i:13063490 original size:158 final size:156
Alignment explanation
Indices: 13063030--13063525 Score: 475
Period size: 158 Copynumber: 3.1 Consensus size: 156
13063020 AAGCATATGA
* * *
13063030 AGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCAACAGCAGGATCGACAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCA
* * ** *
13063094 GGGGGGATCAGACGTATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGC
65 GGGGGGATCAGACG-ATCCTCGACTTGCGCATTCTGCCTCTCC-GACGGTTGAGCACCCGTACGC
*
13063159 -CTGTTTCATGGGTTGGCTTAGGCATAGGG
128 TC-GTTTCATGGGTTGGCTTAGGCATACGG
* ** * * * *
13063188 AGTTCATT-CATGTCTAGGCCCTAG--CAGGACCGACGTGGTTGTGGCAGCTGGA-CCAGTAGCA
1 AGTTCATTCCATGTCTAAGATC-AGATC-GGACCGA-G-GGTTGTAGCAGCAGGATCGA-CAGCA
* * * * * * * * *
13063249 CACAGAGGGGGATCGGGTCGATCCTCGGCTTGCTCATTATGCCTCTCCCGGCTGGTTCAACACCC
61 CGCAG-GGGGGATC-AGACGATCCTCGACTTGCGCATTCTGCCTCT-CCGAC-GGTTGAGCACCC
* * *
13063314 GTACGCTCGTTTCGTGGGTTGACTTCGGCATACGG
122 GTACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
*
13063349 AGTTCATTTCCA-GTCTAAGATCGGATCGGACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCA
1 AGTTCA-TTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCA
* * * * *
13063413 GGAGGGATCAAGCCGGTCCTCGACTTACGCATTCTGCCTCTCCGACGGGCTGAGCACCCGTACGC
65 GGGGGGATC-AGACGATCCTCGACTTGCGCATTCTGCCTCTCCGAC-GGTTGAGCACCCGTACGC
* *
13063478 TCGTTTTATGGGTTGGCTTAGGCATACGA
128 TCGTTTCATGGGTTGGCTTAGGCATACGG
13063507 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
13063526 CATATGGAGT
Statistics
Matches: 266, Mismatches: 55, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
156 3 0.01
157 18 0.07
158 69 0.26
159 51 0.19
160 54 0.20
161 51 0.19
162 17 0.06
163 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCAG
GGGGGATCAGACGATCCTCGACTTGCGCATTCTGCCTCTCCGACGGTTGAGCACCCGTACGCTCG
TTTCATGGGTTGGCTTAGGCATACGG
Found at i:13064539 original size:26 final size:26
Alignment explanation
Indices: 13064509--13064559 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13064499 TTGACTTAGG
13064509 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
*
13064535 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
13064560 GATCGAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:13065511 original size:26 final size:26
Alignment explanation
Indices: 13065481--13065531 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13065471 GGACTTAGGT
13065481 ATATGGAGTTCATCCCCAGTCTAAGC
1 ATATGGAGTTCATCCCCAGTCTAAGC
*
13065507 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATCCCCAGTCTAAG
13065532 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATATGGAGTTCATCCCCAGTCTAAGC
Found at i:13065811 original size:157 final size:157
Alignment explanation
Indices: 13065512--13065846 Score: 417
Period size: 157 Copynumber: 2.1 Consensus size: 157
13065502 TAAGCATATG
* * *
13065512 GAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAAGATCGACAGCACGCA
1 GAGTTCATT-CCAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCAAGATCGACAGCACGCA
** * * * * *
13065577 GGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGAGTGGCTGAGCGCCCGTATGC
65 GGGGGGACCGAATCGATCCCTGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGTACGC
* *
13065642 TCCTTTCGTGGGTTGACTTA-GTCATACA
130 TCATTTCATGGGTTGACTTAGGT-ATACA
* * *
13065670 GAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGC-GGATCGACAGCATGCA
1 GAGTTCATTCC-AGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCAAGATCGACAGCACGCA
* *
13065734 GGGGGGACCGAATCGGTGCCC-GACTTACGCATTCTGCCTCTCCGACTGGCTGAGCTCCC-TCAC
65 GGGGGGACCGAATCGAT-CCCTGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGT-AC
* *
13065797 GCTCATTTCATGGGTTGGCTTAGGTATACG
128 GCTCATTTCATGGGTTGACTTAGGTATACA
13065827 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCA-GTCTAAG
13065847 CATACGAAGT
Statistics
Matches: 153, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
156 2 0.01
157 105 0.69
158 46 0.30
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCCAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCAAGATCGACAGCACGCAG
GGGGGACCGAATCGATCCCTGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGTACGCT
CATTTCATGGGTTGACTTAGGTATACA
Found at i:13065852 original size:26 final size:26
Alignment explanation
Indices: 13065822--13065872 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13065812 TGGCTTAGGT
*
13065822 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGAAGTTCATTCCTA-GTCTAAGC
13065848 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCTAGTCTAAG
13065873 ATGGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCTAGTCTAAGC
Found at i:13066065 original size:26 final size:26
Alignment explanation
Indices: 13066029--13066081 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13066019 GTTGACTTAG
*
13066029 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
13066055 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13066081 G
1 G
13066082 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13066421 original size:26 final size:26
Alignment explanation
Indices: 13066384--13066436 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13066374 GTTGACTTAG
13066384 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13066410 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
13066436 G
1 G
13066437 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13066889 original size:158 final size:157
Alignment explanation
Indices: 13066410--13066945 Score: 461
Period size: 158 Copynumber: 3.4 Consensus size: 157
13066400 CCCAGTCTAA
** * * *
13066410 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTAATGGTTGTGGCAGCAGGATCGAT
1 GCATACAGAGTTCA-TCCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * * *
13066474 AGCACGA-AGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTTCCTTTCCAATCGACTGAACG
65 AGCAC-ATAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC-GTTGACTGAACG
* ** * *
13066538 CCAGCACGCCCATTTCGTGGTTTAGCTTAG
128 CCCGCACGATCATTTCGTGGGTTGGCTTAG
** * * ** * **
13066568 GCATAGGGAGTTCATTCTATGTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACAGAGTTCATCCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * * *
13066632 AGCACGTAGAGGGGGACTGAGCTGATCCTCGGCTTACGCATTATGCCTCTCCGATTGGCTCAATG
65 AGCACATAG-GGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG-TTGACTGAACG
* ** * *
13066697 CTCAAACGATCATTTCATGGGTTGACTTAG
128 CCCGCACGATCATTTCGTGGGTTGGCTTAG
** * *
13066727 GCATAC-GAAGTTCACTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGATAGCAGGAGCAA
1 GCATACAG-AGTTCA-TCCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGA
* * **
13066790 CAGCACATAGGGGGGACCGAGCCGATCCCCGACTTGCATATTCTGCCTCTCCTGTTGACTGAACG
64 CAGCACATAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC-GTTGACTGAACG
* *
13066855 CCCGCACGTTCATTTCGTGGGTCGGCTTAG
128 CCCGCACGATCATTTCGTGGGTTGGCTTAG
* * ** * * *
13066885 GCATACAGAGTTCATTCCATGTCTAAGATCAGATCAAATCGAGGGTTGCGACAGCAGGACC
1 GCATACAGAGTTCATCCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACC
13066946 AGTAGTAGGA
Statistics
Matches: 290, Mismatches: 77, Indels: 22
0.75 0.20 0.06
Matches are distributed among these distances:
157 7 0.02
158 164 0.57
159 116 0.40
160 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATCCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACATAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGTTGACTGAACGCCC
GCACGATCATTTCGTGGGTTGGCTTAG
Found at i:13067802 original size:26 final size:26
Alignment explanation
Indices: 13067765--13067817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13067755 GTTGACTTAG
*
13067765 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13067791 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13067817 G
1 G
13067818 ATTGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13068013 original size:26 final size:26
Alignment explanation
Indices: 13067962--13068013 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13067952 TTGGCTTAGC
*
13067962 CATACGAAGTTCATTCCATGTTTAAG
1 CATACGAAGTTCATTCCATGTCTAAG
*
13067988 CATACGGAGTTCATTCCCA-GTCTAAG
1 CATACGAAGTTCATT-CCATGTCTAAG
13068014 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCATGTCTAAG
Found at i:13072211 original size:26 final size:26
Alignment explanation
Indices: 13072175--13072226 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13072165 GTTGGCTTAG
* *
13072175 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
13072201 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
13072227 ATTTGGGGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:13072544 original size:26 final size:26
Alignment explanation
Indices: 13072508--13072560 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13072498 GTTGACTTAG
* *
13072508 GCATATGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13072534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13072560 G
1 G
13072561 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13072834 original size:158 final size:157
Alignment explanation
Indices: 13072598--13073352 Score: 546
Period size: 158 Copynumber: 4.8 Consensus size: 157
13072588 CAGGATTGGT
* * * * * * * * * *
13072598 AGCACACAGGGGGGATCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCAC
1 AGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGC
**
13072663 CCGTACGTCCGTTTCAGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
66 CCACACG-CCGTTTCAGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
**
13072728 GACCGAGGGTTGTGGCAGTGGGACTGAA
130 GACCGAGGGTTGTGGCAGTGGGACTGGC
* * * *
13072756 AG-ATGCAGAGGGGGACCGGGCCGATCCTCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCG
1 AGCACGCAG-GGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCG
* * * * * * * **
13072820 CCTGGATAC-TCGTTTC-GTGGGTTGACTTATGCATATGGATTTCATTCCCA-GTCTAAG-ATCA
65 CC--CACACGCCGTTTCAG-GGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA
* * ** * **
13072881 GACCAGATTGAGGGTTGCGGCAGTATGA-TCGGC
126 G-TCGGACCGAGGGTTGTGGCAGTGGGACT-GGC
* * * * * * *
13072914 AGCACGCAGGTGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGTCTCTCCGGTCGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGC
* *
13072979 CCACACGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
66 CCACACGCC-GTTTCAGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
*
13073044 GACCGAGGGTTGTGGCAGCGGGACTGGC
130 GACCGAGGGTTGTGGCAGTGGGACTGGC
* * * *
13073072 AGCACGAAGCGGGGGATCGGGCCGATCTTC-AGCTGGCGCATTATGCCTCTTCGGTCGGCTCAAC
1 AGCACGCAG-GGGGGATCGGGCCGATCCTCGA-CTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
* * * * * * **
13073136 GCCCTCACGCTCGTTT-TGTGGGTTGACTTATGCATACGGATTTCATTCCCA-GTCTAAG-ATCA
64 GCCCACACGC-CGTTTCAG-GGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA
* * * * * *
13073198 GACCAGACCGAGGGCTGTGGTAGTAGGA-TCGAC
126 G-TCGGACCGAGGGTTGTGGCAGTGGGACT-GGC
* * * * * * * * * * *
13073231 AGCACGTAGGGTGGACCGAGCCGATCC-CTGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGTG
1 AGCACGCAGGGGGGATCGGGCCGATCCTC-GACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCG
** * * *
13073295 CCTGCACGCTCATTTC-GTGGGTTGGCTTAGGCAGACGGAGTTCATTCCATGTCTAAGC
65 CCCACACGC-CGTTTCAG-GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13073353 ATACGGGGTT
Statistics
Matches: 460, Mismatches: 111, Indels: 51
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 17 0.04
158 305 0.66
159 128 0.28
160 7 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
AGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGC
CCACACGCCGTTTCAGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGTGGCAGTGGGACTGGC
Found at i:13073256 original size:317 final size:316
Alignment explanation
Indices: 13072534--13073352 Score: 1011
Period size: 317 Copynumber: 2.6 Consensus size: 316
13072524 CCCAGTCTAA
* ** * * * * * * **
13072534 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACTGAGGGTTACGACAGCAGGATTGGT
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGCTGCGGCAGTAGGATCGAC
* * * * * * *
13072598 AGCACACAGGGGGGATCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCAC
65 AGCACGCAGGTGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGC
* * *
13072663 CCGTACGTCC-GTTTCAGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
130 CCGCACG-CCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * *
13072727 GGACCGAGGGTTGTGGCAGTGGGACTGAAAGATGCAGAGGGGGACCGGGCCGATCCTCGACTTAC
194 GGACCGAGGGTTGTGGCAGCGGGACTGAAAGACGAAGAGGGGGACCGGGCCGATCCTCGACTGAC
* * *
13072792 GCATTATGCCTCTTCGGCCGGCTCAGCGCCTGGATACTCGTTTCGTGGGTTGACTTAT
259 GCATTATGCCTCTTCGGCCGGCTCAACGCCTGCACACTCGTTTCGTGGGTTGACTTAT
* ** * * *
13072850 GCATATGGATTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGTATGATCGGCA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGGCAGTAGGATCGACA
* * * *
13072915 GCACGCAGGTGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGTCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGTGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
*
13072980 CACACGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
131 CGCACGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
** * * * *
13073045 ACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGAAGCGGGGGATCGGGCCGATCTTC-AGCTGGC
196 ACCGAGGGTTGTGGCAGCGGGACTGAAAG-ACGAAGAGGGGGACCGGGCCGATCCTCGA-CTGAC
* * *
13073109 GCATTATGCCTCTTCGGTCGGCTCAACGCCCT-CACGCTCGTTTTGTGGGTTGACTTAT
259 GCATTATGCCTCTTCGGCCGGCTCAACG-CCTGCACACTCGTTTCGTGGGTTGACTTAT
* *
13073167 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGTGGTAGTAGGATCGACA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGGCAGTAGGATCGACA
* * * *
13073232 GCACGTAGG-GTGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGTGC
66 GCACGCAGGTG-GGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGC
* * * *
13073296 CTGCACG-CTCATTTCGTGGGTTGGCTTAGGCAGACGGAGTTCATTCCATGTCTAAGC
130 CCGCACGCCT-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13073353 ATACGGGGTT
Statistics
Matches: 437, Mismatches: 59, Indels: 13
0.86 0.12 0.03
Matches are distributed among these distances:
315 2 0.00
316 198 0.45
317 234 0.54
318 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (316 bp):
GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGGCAGTAGGATCGACA
GCACGCAGGTGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
CGCACGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGTGGCAGCGGGACTGAAAGACGAAGAGGGGGACCGGGCCGATCCTCGACTGACGC
ATTATGCCTCTTCGGCCGGCTCAACGCCTGCACACTCGTTTCGTGGGTTGACTTAT
Found at i:13074270 original size:159 final size:159
Alignment explanation
Indices: 13074025--13074414 Score: 435
Period size: 159 Copynumber: 2.5 Consensus size: 159
13074015 AGCATGCTCA
* * * ** *
13074025 TTTCATGGGTTGGCTTAGGCATAGGGGGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACTGAGGG
* * * * * * * * *
13074088 TTGTGGTAGCGAGATCGGCAGCACGCAGAGTGGG-ATCGGGCCGATCCCCAGCTTGCGCATTATG
64 TTGCGGCAGCAAGATCGACAGCACACAG-GGGGGTACCGAGCCAATCCCCAGCTTGCGCATTATG
* ** * *
13074152 CCTATCCGGCCATCTCAGTGCCCGCACACTCG
128 CATATCCAACCAGCTCAGCGCCCGCACACTCG
* *
13074184 TTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTT
* * * *
13074249 GCGGCAGCAAGATTGATAGCACACAGGGGGGTACCGAGCCAATCCCCGGCTTGCGCATTCTGCAT
66 GCGGCAGCAAGATCGACAGCACACAGGGGGGTACCGAGCCAATCCCCAGCTTGCGCATTATGCAT
* * * *
13074314 CTCCAACCGGCTGAGCGCCCGCACGCTCG
131 ATCCAACCAGCTCAGCGCCCGCACACTCG
* * *
13074343 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAAATCAGACCGGACTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTT
13074408 GCGGCAG
66 GCGGCAG
13074415 TAGGTCCAGC
Statistics
Matches: 194, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
158 6 0.03
159 185 0.95
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTT
GCGGCAGCAAGATCGACAGCACACAGGGGGGTACCGAGCCAATCCCCAGCTTGCGCATTATGCAT
ATCCAACCAGCTCAGCGCCCGCACACTCG
Found at i:13074729 original size:171 final size:170
Alignment explanation
Indices: 13074290--13074730 Score: 429
Period size: 170 Copynumber: 2.6 Consensus size: 170
13074280 TACCGAGCCA
* * * * ** * * *
13074290 ATCCCCGGCTTGCGCATTCTGCATCTCCAACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCTCGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTG
* * * * ** *
13074355 GCTTAGGCATACGGAGTTCATTCCCAATTTAA-AATCAGACCGGACTGAGGGTTGCGGCAGTAGG
66 GCTTAGGCATACGGAGTTCA-TCCCAATCTAAGCACCAGACCGGACCGAAAGTTGCGGCAGCAGG
* * * *
13074419 TCCAGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGTTG
130 ACCAGCAGCAGGATCGAAAGCACGTAGGGGGGACCGGGCTG
* ** * * * * *
13074460 ATCCTCGTCTTGTGCATTCTGCCTCTCCGGCCAGCTGAACACCCGTACGCTTGTTTCTTGGGTTG
1 ATCCTCGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTG
* * * * * *
13074525 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-ACTGGACCGAAAGTTGTGGTAGCAGG
66 GCTTAGGCATACGGAGTTCATCCCA-ATCTAAGCACCAGACCGGACCGAAAGTTGCGGCAGCAGG
* * *
13074589 ACC-GACAGCAGGATTGAAAGCACGTGGAGGGGGACCTGGCTG
130 ACCAG-CAGCAGGATCGAAAGCACGTAG-GGGGGACCGGGCTG
* * * *
13074631 ATCCTCGGCTTACGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCATTTCATGGGTTG
1 ATCCTCGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTG
* *
13074696 ACTTAGGCATACGGAGTTTATCCCCAATCTAAGCA
66 GCTTAGGCATACGGAGTTCAT-CCCAATCTAAGCA
13074731 TACGGAGTTC
Statistics
Matches: 217, Mismatches: 49, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
169 5 0.02
170 117 0.54
171 92 0.42
172 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (170 bp):
ATCCTCGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATCCCAATCTAAGCACCAGACCGGACCGAAAGTTGCGGCAGCAGGA
CCAGCAGCAGGATCGAAAGCACGTAGGGGGGACCGGGCTG
Found at i:13074731 original size:26 final size:26
Alignment explanation
Indices: 13074702--13074754 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13074692 GTTGACTTAG
*
13074702 GCATACGGAGTTTATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13074728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13074754 G
1 G
13074755 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13075049 original size:159 final size:158
Alignment explanation
Indices: 13074728--13075230 Score: 520
Period size: 158 Copynumber: 3.2 Consensus size: 158
13074718 CCCAATCTAA
* *
13074728 GCATACGGAGTTCATTCCCA-GTCTAAG-ATC-GAATCGGACCGAGGGTTGCGGCAGCAGGATCG
1 GCATA-GGAGTTCATT-CCATGTCTAAGCACCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * *
13074790 ACAGCACGTAG-GGGGGATCGGGCCGATCTTCGACTTGCGTATTCTGCCTCTCCGGCCGGCTGAG
63 ACAGCACG-AGAGGGGGACCGGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAG
*
13074854 CGCCCGCACGCCCA-TTCTGTGGGTTGGCTTAG
127 CGCCCGCACGCTCATTTC-GTGGGTTGGCTTAG
* * * * *
13074886 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAACGGGACCGAC
1 GCATA-GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
13074950 AGCACGCAGAGGGGGACCGGATCGATCCTCGGCTTGCGTATTATGCCTCTTCGGCCGACTCACCG
65 AGCACG-AGAGGGGGACCGGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCG
* ** *
13075015 CCCGTACGCTCATTTCGTGGGTTAACTTAT
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
13075045 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGTGTTGCGGTAGCAGGATCGA
1 GCATA-GGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
13075108 CAGCACGATGA-GGGGACTGGGTTGATCCTCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGC
64 CAGCACGA-GAGGGGGACCGGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAGC
** * * *
13075172 GCTTGCACACTCGTTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
13075203 GCATAGGAGTTCATTCCATGTCTAAGCA
1 GCATAGGAGTTCATTCCATGTCTAAGCA
13075231 TACGGAGTTC
Statistics
Matches: 280, Mismatches: 55, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 20 0.07
158 129 0.46
159 121 0.43
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATAGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGAGAGGGGGACCGGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:13075238 original size:26 final size:25
Alignment explanation
Indices: 13075203--13075254 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
13075193 GTTGGCTTAG
13075203 GCATAGGAGTTCATT-CCATGTCTAA
1 GCATAGGAGTTCATTCCCA-GTCTAA
13075228 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCATTCCCAGTCTAA
13075254 G
1 G
13075255 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 17 0.68
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCCAGTCTAA
Found at i:13075641 original size:26 final size:26
Alignment explanation
Indices: 13075605--13075657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13075595 GTTGACTTAG
*
13075605 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13075631 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13075657 G
1 G
13075658 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13076427 original size:44 final size:44
Alignment explanation
Indices: 13076355--13076438 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
13076345 AAGGGATCTA
* * *
13076355 CCCGGCCATGGCCCTATACATGGGTGGCTTATGGCAACCTAAGT
1 CCCGGCCATGGCCCTATACAAGGGTGGCTCATGACAACCTAAGT
* * *
13076399 CCCGGTCATGGCCCTGTACAAGGTTGGCTCATGACAACCT
1 CCCGGCCATGGCCCTATACAAGGGTGGCTCATGACAACCT
13076439 CCCCCACCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.20, C:0.31, G:0.26, T:0.23
Consensus pattern (44 bp):
CCCGGCCATGGCCCTATACAAGGGTGGCTCATGACAACCTAAGT
Found at i:13079905 original size:155 final size:157
Alignment explanation
Indices: 13079523--13079905 Score: 364
Period size: 157 Copynumber: 2.4 Consensus size: 157
13079513 GATCTGCCCT
* * * *
13079523 ACGTGCTATCAATCCTGCTG-TCGTAACTCTCAGTTTGATCTGATCTTACACTGGGAATGAACTC
1 ACGTGCTATCGATCCTGCTGCT-GTAACCCTCAGTCTG-TCTGATCTTAGACTGGGAATGAACTC
* * *
13079587 CGTATGCAAAAGTAAACCCACGAAATGAGCGTGCGGGCGCTGAGCTGACCGAAGAGGCATAATGC
64 CGTATGCAAAAGTAAACCCACGAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCAGAATGC
* * *
13079652 ACAAGCCAGGGATCGGCCCAGTCCCCTCT
129 ACAAGACAGGGATCAGCCCAGTCCCCTCA
* * * * *** * ** *
13079681 GCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCTGGCTGGGCTTTGACAT-GGAATGAACTCC
1 ACGTGCTATCGATCCTGCTGCTGTAACCCTCAGTCTGTCTGATCTTAGAC-TGGGAATGAACTCC
* ** * * * *
13079745 CTATGCCTAA-TCCAACCCACGAAATG-GACGTGCGGGCACTTAGCCGATCGGAGAGGCAGAATG
65 GTATGCAAAAGT-AAACCCACGAAATGAG-CGTGCGGGCACTGAGCCGACCGAAGAGGCAGAATG
** * *
13079808 TGCAA-AC-GGGATCAGCCCGGTCCCTTCA
128 CACAAGACAGGGATCAGCCCAGTCCCCTCA
* * *
13079836 ACGTGCTATCGATCCTACTGCTGTAACCCTCAATCTGTCTGATCTTAGACTGGGAATGAACTTCG
1 ACGTGCTATCGATCCTGCTGCTGTAACCCTCAGTCTGTCTGATCTTAGACTGGGAATGAACTCCG
13079901 TATGC
66 TATGC
13079906 TTAGACTGGG
Statistics
Matches: 173, Mismatches: 47, Indels: 13
0.74 0.20 0.06
Matches are distributed among these distances:
154 1 0.01
155 70 0.40
156 3 0.02
157 72 0.42
158 27 0.16
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (157 bp):
ACGTGCTATCGATCCTGCTGCTGTAACCCTCAGTCTGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCAAAAGTAAACCCACGAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCAGAATGCAC
AAGACAGGGATCAGCCCAGTCCCCTCA
Found at i:13079930 original size:26 final size:26
Alignment explanation
Indices: 13079879--13079931 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13079869 TCTGTCTGAT
* *
13079879 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13079905 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13079931 C
1 C
13079932 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13080485 original size:159 final size:157
Alignment explanation
Indices: 13080056--13080498 Score: 479
Period size: 159 Copynumber: 2.8 Consensus size: 157
13080046 CCGCTGCCAG
* **
13080056 TCCTGCTACCACAACCCTCAGTCTGG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTACCACAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAG
* * * * **
13080120 CCAACCCACGAAACGAGTGTGCAGGCGCTCAGTCAGCCGGAGAGGTAGAATGCACAAG-TTGGGA
64 TCAACCCACGAAACGAGCGTGC-GGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * **
13080184 -CCGCCCAGGTCCCTTCTGCGTGCTGTCGA
128 TCAGCCCAGATCCCCCCTGCGTGCTGTCGA
* * * ** *
13080213 TCTTGCTACCGCAACCCTCGGTCTAGTCCAATCTT--A-TGGAATGAACTTCGTATGCCTAAGTC
1 TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
13080275 AACCCATGAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAAGCATAATGCGCAAGCCGGGGATC
66 AACCCACGAAACGAGCGTGC-GGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
13080340 AGCCC-GATCCCCCCATGCGTGCTGTCGA
130 AGCCCAGATCCCCCC-TGCGTGCTGTCGA
* *
13080368 TCCTGCTACCACAACACTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGT
* * *
13080433 GAACCCACGAAACGAGCATGCGGACGCTCAGTC-GACCAGAGAGGCAGAATGCGCAAGCCGGGGA
65 CAACCCACGAAACGAGCGTGCGG-CGCTCAGTCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGA
13080497 TC
128 TC
13080499 GAACGGGTGG
Statistics
Matches: 231, Mismatches: 45, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
153 69 0.30
154 10 0.04
155 47 0.20
157 26 0.11
158 5 0.02
159 74 0.32
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCA
GCCCAGATCCCCCCTGCGTGCTGTCGA
Found at i:13081462 original size:159 final size:156
Alignment explanation
Indices: 13081139--13081596 Score: 417
Period size: 159 Copynumber: 2.9 Consensus size: 156
13081129 TATGCTTAGG
* * ** * * **
13081139 CATGGAATGAACTCCGTATGC-TAAGCCAACCCACAAAAGGAGCGTGCTGGCACTCAG-CAGGTC
1 CATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCA-ACC
* * * * * * * *
13081202 -ATAGAGGCAGAATGTGCAAGCGAGGATTGGC-CGGTCCCCCCTGCATGCTGTCGATCCTGCTGC
65 GA-AGA-GCAGAATGCGAAAGCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCCTGCTGC
* ** * ** * *
13081265 CACAACCCTCGGTCTGGTCCA-ATCTTAAA
128 CACAACCCTCAGTCCAG-CTAGGGCGTAGA
*** ** * * * **
13081294 C-TGGGAATGAACTTTGTATGCATAAGTTAACCCACGAAACGAGCGTGCTGGCGCTGAGCCAGTC
1 CAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACC
* * *
13081358 GAAGAGGCATAATGCGCAAGTCGGGGATCGGC-CTGATCCCCCTCTACGTGCTGCCGGTCCTGCT
65 GAAGA-GCAGAATGCGAAAG-CGGGGATCGGCTC-GATCCCCC-CTACGTGCTGCCGATCCTGCT
13081422 GCCACAACCCTCAGTCCAGCTAGGGCGTAGA
126 GCCACAACCCTCAGTCCAGCTAGGGCGTAGA
*
13081453 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACCG
1 CATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACCG
* *
13081518 GAGAGCAGAATGCGAAAGCGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCAC
66 AAGAGCAGAATGCGAAAGCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCAC
*
13081583 AACCCTCGGTCCAG
131 AACCCTCAGTCCAG
13081597 TCTGATCTTA
Statistics
Matches: 251, Mismatches: 42, Indels: 19
0.80 0.13 0.06
Matches are distributed among these distances:
154 1 0.00
155 17 0.07
156 86 0.34
157 32 0.13
158 22 0.09
159 92 0.37
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
CATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACCG
AAGAGCAGAATGCGAAAGCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCAC
AACCCTCAGTCCAGCTAGGGCGTAGA
Found at i:13081616 original size:156 final size:156
Alignment explanation
Indices: 13081142--13081629 Score: 547
Period size: 156 Copynumber: 3.1 Consensus size: 156
13081132 GCTTAGGCAT
* * *
13081142 GGAATGAACTCCGTATG-CTAAGCCAACCCACAAAAGGAGCGTGCTGGCACTCAG-CAGGTC-AT
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCTGGCGCTCAGCCA-GTCGA-
* * * * * *
13081204 AGAGGCAGAATGTGCAAGCGAGGATTGGCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGCCACA
64 AGAGGCAGAATGCGCAAGCGGGGATCGGCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCACA
** ** *
13081269 ACCCTCGGTCTGGTCCAATCTTAAACTG
129 ACCCTCGGTCCAGTCTGATCTTAGACTG
** * ** *
13081297 GGAATGAACTTTGTATGCATAAGTTAACCCACGAAACGAGCGTGCTGGCGCTGAGCCAGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCTGGCGCTCAGCCAGTCGAAG
* * *
13081362 AGGCATAATGCGCAAGTCGGGGATCGGCCTGATCCCCCTCTACGTGCTGCCGGTCCTGCTGCCAC
66 AGGCAGAATGCGCAAG-CGGGGATCGGCC-GATCCCCC-CTGCGTGCTGCCGATCCTGCTGCCAC
* ** *
13081427 AACCCTCAGTCCAG-CTAGGGCGTAGACAT-
128 AACCCTCGGTCCAGTCT-GATCTTAGAC-TG
* * * ** *
13081456 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCTGGCGCTCAGCCAGTCGAAG
*
13081521 A-GCAGAATGCGAAAGCGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAA
66 AGGCAGAATGCGCAAGCGGGGATCGGC-CGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAA
13081585 CCCTCGGTCCAGTCTGATCTTAGACTG
130 CCCTCGGTCCAGTCTGATCTTAGACTG
*
13081612 GGAATGAACTTCGTATGC
1 GGAATGAACTCCGTATGC
13081630 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 49, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
155 16 0.06
156 109 0.40
157 34 0.12
158 21 0.08
159 92 0.34
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCTGGCGCTCAGCCAGTCGAAG
AGGCAGAATGCGCAAGCGGGGATCGGCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAAC
CCTCGGTCCAGTCTGATCTTAGACTG
Found at i:13081655 original size:26 final size:26
Alignment explanation
Indices: 13081603--13081655 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13081593 CCAGTCTGAT
*
13081603 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGAATG
*
13081629 CTTAGACTGGGGATGAAC-TCTGAATG
1 CTTAGACTGGGAATGAACTTC-GAATG
13081655 C
1 C
13081656 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGAATG
Found at i:13082252 original size:11 final size:11
Alignment explanation
Indices: 13082236--13082268 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13082226 CGGTTAGGCT
13082236 CTCCGACGATG
1 CTCCGACGATG
13082247 CTCCGACGATG
1 CTCCGACGATG
*
13082258 CTCCGGCGATG
1 CTCCGACGATG
13082269 ATGCCCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:13082375 original size:26 final size:26
Alignment explanation
Indices: 13082337--13082389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13082327 GGCTCAAAAT
13082337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13082363 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13082389 C
1 C
13082390 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13082880 original size:26 final size:26
Alignment explanation
Indices: 13082839--13082891 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13082829 CTGGTCGGAT
13082839 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13082865 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
13082891 C
1 C
13082892 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13083393 original size:26 final size:26
Alignment explanation
Indices: 13083364--13083416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13083354 TCCATCTGAT
*
13083364 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13083390 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13083416 C
1 C
13083417 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13085242 original size:158 final size:158
Alignment explanation
Indices: 13084957--13085242 Score: 360
Period size: 158 Copynumber: 1.8 Consensus size: 158
13084947 GACATGTAAC
* * * *
13084957 GAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGCA
1 GAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA
* ** * * *
13085022 GAATGCATAAGCCGAGGATCAGCCCAGTCCCCCCTGTGTGCTATCAATCCTGTTGCCGCAACCGT
66 GAATGCACAAGCCGAGGATCAGCCCAGTCCCCCCTGCATGCTACCAATCCTGCTGCCACAACCGT
13085087 CGATCCGATCCTATCTTAGACTGGGAAT
131 CGATCCGATCCTATCTTAGACTGGGAAT
* * * *
13085115 GAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGATCGGAGAGGCA
1 GAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA
* * ** * *
13085180 TAATGCGCAAGCCGAGGATC-GGTCGGTCCCCCTCTGCATGCTACCAGT-CTCGCTGCCACAACC
66 GAATGCACAAGCCGAGGATCAGCCCAGTCCCCC-CTGCATGCTACCAATCCT-GCTGCCACAACC
13085243 ATCGGTCCAA
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 11 0.10
158 95 0.90
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA
GAATGCACAAGCCGAGGATCAGCCCAGTCCCCCCTGCATGCTACCAATCCTGCTGCCACAACCGT
CGATCCGATCCTATCTTAGACTGGGAAT
Found at i:13085651 original size:26 final size:26
Alignment explanation
Indices: 13085613--13085665 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13085603 CTGGTTTGAT
13085613 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
13085639 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
13085665 C
1 C
13085666 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:13086124 original size:26 final size:26
Alignment explanation
Indices: 13086095--13086147 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13086085 CCGGTCCAAT
13086095 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
13086121 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
13086147 C
1 C
13086148 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13086173 original size:678 final size:685
Alignment explanation
Indices: 13084752--13086219 Score: 1650
Period size: 678 Copynumber: 2.1 Consensus size: 685
13084742 GGGGCTTAAA
** * * * *
13084752 TAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGAGCGTTCGGGTGCTCAGTCAGC
1 TAGGG-ATGAACTCCGTATGCCTAAGTCAACCCATGAAA--AGAGCGTGCGGGCGCTCAGCCGGC
* * * * * ** **
13084817 CAAAGAGGCAGAATGGGCAAGCCGGGGATCAGCCCGTCCCCCCTACGTGCTGTCGATCCTACTGT
63 CAGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGTCCCCCCTACATGCTACCGATCCTACTAA
* * * *
13084882 TGGTCCTGCTGCCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTA
128 TGGTCCTACTGCCGCAACCCTCGAGTCGGTCTGATCTTAGACTGGGAATGAAATCCATATGCTTA
* ** **
13084947 GACATGTAACGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAGCCGAC
193 GACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGAC
* * * * *
13085012 CGGAGAGGCAGAATGCATAAGCCGAGGATCAGCCCAGTCCCCCCTGTGTGCTATCAATCCTGTTG
258 CGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCAATCCCCCCTATGTGCTATCAATCCTGCTG
* *
13085077 CCGCAACCGTCGATCCGATCCTATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAC
323 CCGCAACCCTCGATCCGATCCTATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCAC
* * ** *
13085142 GAAACGAGCGTGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGGTCGGT
388 GAAACGAGCGTACAGGCACTGAGCCGA-CGGAGAGGCATAATGCGCAAGCCGAGGA--GATCGG-
* *
13085207 CCCCCTCTGCATGCTACCAGTCTCGCTGCCACAACCATCGGTCCAACTGGGGCTTAGATATGGAT
449 ---CCTCTGCATGC-ACCA--CTCGCTGCCACAACCATCGGTCCAACTAGGGCTTAGATATGGAA
* * ** * * * * *
13085272 TGAACTCTCTATGCCTAAGCCAACCCATGAAATGGGGGTACAGACGCTCAGTCGGCCGGAGAGGC
508 TGAACACCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGTCGCCCGAAAAGGC
* * * * *
13085337 AAAATACACAAGCTAGGGATCAACCCGGTTCCCACTGCGTGCTGTCGATCCTGCTACCGTAACCC
573 AAAATACACAAGCTAGGGATCAACCCGGTCCCCACTGCATGCTGCCGATCCTACTACCGCAACCC
** * * * *
13085402 TTGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGAC
638 TCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
* * * * *
13085450 TAGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGTCGG
1 TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * *
13085515 AGAGGCAGAATGCGTAATCTAGGGATCAGCCCAGTCCCCCCTGCATGCTACCGATCTTGCTAATG
66 AGAGGCAGAATGCGTAAGCCAGGGATCAGCCC-GTCCCCCCTACATGCTACCGATCCTACTAATG
* *
13085580 GTCCTACTGCCGCAACCCTC-AGTCTGGTTTGATCTTAGACTGGGAATGAAATCCGTATGCTTAG
130 GTCCTACTGCCGCAACCCTCGAGTC-GGTCTGATCTTAGACTGGGAATGAAATCCATATGCTTAG
* *
13085644 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCTCAGCCGACC
194 ACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGACC
* ** * * **
13085709 GGAGAGGCAGAATGCGCAAGGTGGGGACC-GACCCAATCATCCCCTATGTGCTATCGGTCCTGCT
259 GGAGAGGCAGAATGCACAAGCCGAGGACCAG-CCCAATC-CCCCCTATGTGCTATCAATCCTGCT
* * * * *
13085773 GTCGCAACCCTCGGTCTGGT-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
322 GCCGCAACCCTCGATCCGATCCT-ATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCC
* * * *
13085837 ATG-AATGGGCGTACAGGCACTGAGCCTG-CAGGAGAGGCATAATGCGTAAGCC-AGG-GATCGG
386 ACGAAACGAGCGTACAGGCACTGAGCC-GAC-GGAGAGGCATAATGCGCAAGCCGAGGAGATCGG
* * * *
13085898 -C-CTG-AT-C-CC-C-CGTTGCCACAACCCTCGGTCCAGCTAGGGTTTAGATATGGAATGAACA
449 CCTCTGCATGCACCACTCGCTGCCACAACCATCGGTCCAACTAGGGCTTAGATATGGAATGAACA
* * ** *
13085956 CCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGTCGCCCGAAAAGGCAAAATG
514 CCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGTCGCCCGAAAAGGCAAAATA
** * * * * * *
13086021 CGTAAGCTGGGGATTAGCCCGGTCCCCCCTGCATGCTGCCGATCCTACTGCTGCAACCCTCAGTC
579 CACAAGCTAGGGATCAACCCGGTCCCCACTGCATGCTGCCGATCCTACTACCGCAACCCTCAGTC
*
13086086 CGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAT
644 CGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
* * * *
13086128 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCGGCCGACCAG
1 TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAG
* *
13086193 AGAGGCAGGATGCGTAAGCCGGGGATC
66 AGAGGCAGAATGCGTAAGCCAGGGATC
13086220 GAACAGGTGG
Statistics
Matches: 645, Mismatches: 118, Indels: 34
0.81 0.15 0.04
Matches are distributed among these distances:
678 260 0.40
679 1 0.00
682 2 0.00
684 1 0.00
685 2 0.00
686 3 0.00
687 1 0.00
692 5 0.01
695 53 0.08
696 205 0.32
697 107 0.17
698 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (685 bp):
TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAG
AGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGTCCCCCCTACATGCTACCGATCCTACTAATGG
TCCTACTGCCGCAACCCTCGAGTCGGTCTGATCTTAGACTGGGAATGAAATCCATATGCTTAGAC
ATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGACCGG
AGAGGCAGAATGCACAAGCCGAGGACCAGCCCAATCCCCCCTATGTGCTATCAATCCTGCTGCCG
CAACCCTCGATCCGATCCTATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAA
ACGAGCGTACAGGCACTGAGCCGACGGAGAGGCATAATGCGCAAGCCGAGGAGATCGGCCTCTGC
ATGCACCACTCGCTGCCACAACCATCGGTCCAACTAGGGCTTAGATATGGAATGAACACCCTATG
CCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGTCGCCCGAAAAGGCAAAATACACAAGC
TAGGGATCAACCCGGTCCCCACTGCATGCTGCCGATCCTACTACCGCAACCCTCAGTCCGGTCCA
ATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
Found at i:13086817 original size:26 final size:26
Alignment explanation
Indices: 13086777--13086829 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13086767 GGCTCAAACT
13086777 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13086803 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
13086829 C
1 C
13086830 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13087601 original size:342 final size:351
Alignment explanation
Indices: 13086776--13087588 Score: 821
Period size: 355 Copynumber: 2.3 Consensus size: 351
13086766 TGGCTCAAAC
** *
13086776 TCTTAGACT-GGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTAGG-AATGAACTCCACATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
** * * * ** * * ***
13086840 CCATGAAACGAGCGTGTGGGTGCTCAGCATACCGGAGAGGCATAATGCGCAAGCCAGGGATC-AG
65 CCACAAAACGAGCATGCGGGAGCTCAGCCGACCAGAGAGGCAAAATGCGCAAGTTGGGGATCGA-
* * **
13086904 CCCGATCCCTCTCTGCGTGCTGTCGATCTTCCTGTCGGTCCTGCTACCACAACCCTCAGTCCGGT
129 CCCGAT-CC-C-C--C-T-CTGT-G----TCCTGTCGATCCCGCTACCACAACCCTCAGTCCGAC
* * * *
13086969 TGGGGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAATGAGCGTACGGGCGC
182 TGGCGCTTACACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAAGGAGCGTACGGGCGC
* * *
13087034 TCAACCGATCGGAGAGGCAGAATTCACAAGTCGAGGATCGTCCAGGTCCCCCCTACATGCTGTCG
247 TCAACCGATCGGAGAGGCAGAATGCACAACTCGAGGATCGTCCAGATCCCCCCTA-A-GCTGTC-
* * * *
13087099 ATCTTGCTACTGGTCTTGCTACTACAACCCTCGGTCCGGTCTGA
309 ATCTTGC-ACTGATCCTGCTACCACAACCCTCGGTCCAGTCTGA
* ** *
13087143 TCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGAAATGAACTCCGTATGGCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCACATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
** * **
13087208 CATGAAAGGAGCATGCGGGAGCTCAGCCGGTCAGAGAGGCAAAATGCGCAAGTTGGGGATCGACC
66 CACAAAACGAGCATGCGGGAGCTCAGCCGACCAGAGAGGCAAAATGCGCAAGTTGGGGATCGACC
* * *
13087273 CGATCCCCCTCTGTGTCCTGTCGATCCCGCTGCCACAACCCTCGGTCTGACTGGCGCTTACACAT
131 CGATCCCCCTCTGTGTCCTGTCGATCCCGCTACCACAACCCTCAGTCCGACTGGCGCTTACACAT
** * *
13087338 GGAATGAACTCCCTATGCCTTAGCCAACCCATGAAACGGA-CGTGCGGGCGCTCAGCCGATCGGA
196 GGAATGAACTCCCTATGCCAAAGCCAACCCATGAAA-GGAGCGTACGGGCGCTCAACCGATCGGA
*
13087402 GAGGCAGAATGCACAAACT-GAGGATCAG-CCCGAT-CCCCCT-A-C-GT-A-C-TGC-C-GATC
260 GAGGCAGAATGCAC-AACTCGAGGATC-GTCCAGATCCCCCCTAAGCTGTCATCTTGCACTGATC
* *
13087456 CTGCTACCGCAACCCTCGGTCTAGTCTGA
323 CTGCTACCACAACCCTCGGTCCAGTCTGA
* ** *
13087485 TCTTAGACTGGGAATGAACTCCACATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTAGGAATGAACTCCACATGCTTAGACAT-GAAATGAACTCCGTATGCCTAAGCCAAC
*
13087549 CCACAAAACGAGCGTGC-GGACGCTCAGCCGACCAGAGAGG
65 CCACAAAACGAGCATGCGGGA-GCTCAGCCGACCAGAGAGG
13087589 TAGGGTGCGC
Statistics
Matches: 384, Mismatches: 55, Indels: 39
0.80 0.12 0.08
Matches are distributed among these distances:
341 4 0.01
342 111 0.29
343 1 0.00
345 3 0.01
346 1 0.00
347 1 0.00
349 2 0.01
350 1 0.00
352 1 0.00
354 6 0.02
355 120 0.31
356 6 0.02
359 1 0.00
360 4 0.01
361 1 0.00
362 1 0.00
364 1 0.00
365 1 0.00
366 2 0.01
367 113 0.29
368 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (351 bp):
TCTTAGACTAGGAATGAACTCCACATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
CACAAAACGAGCATGCGGGAGCTCAGCCGACCAGAGAGGCAAAATGCGCAAGTTGGGGATCGACC
CGATCCCCCTCTGTGTCCTGTCGATCCCGCTACCACAACCCTCAGTCCGACTGGCGCTTACACAT
GGAATGAACTCCCTATGCCAAAGCCAACCCATGAAAGGAGCGTACGGGCGCTCAACCGATCGGAG
AGGCAGAATGCACAACTCGAGGATCGTCCAGATCCCCCCTAAGCTGTCATCTTGCACTGATCCTG
CTACCACAACCCTCGGTCCAGTCTGA
Found at i:13088486 original size:155 final size:155
Alignment explanation
Indices: 13088202--13088492 Score: 343
Period size: 155 Copynumber: 1.9 Consensus size: 155
13088192 TTTGGTTGGG
** * * *
13088202 GCTTAGACATGGAATGAACTCTGTATGCCAAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAG
* ** ** *
13088267 CCGACCGAAGAGGCAAAATTCGTAAGCCGAGGATCGTTCAGGTCCCCCCTGCATGCTGTTGATCC
66 CCGACCGAAGAGGCAAAATACGTAAGCCGAGGATCGGCCAGGTCCCCAATGCATGCTGTCGATCC
13088332 TGCTACTGGTCTTGCTACTCCGTAT
131 TGCTACTGGTCTTGCTACTCCGTAT
* * * * * *
13088357 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCATCCCACGAAACGGGCGTGCGGGAGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAG
* * * * * *
13088422 CCGGCC-AGAGAGGCAGAATACGTAAGTCG-GAGATCGGCCTGGTCCCCAATGCGTGGTGTCGAT
66 CCGACCGA-AGAGGCAAAATACGTAAGCCGAG-GATCGGCCAGGTCCCCAATGCATGCTGTCGAT
13088485 CCTGCTAC
129 CCTGCTAC
13088493 CGCAACCCTC
Statistics
Matches: 111, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
154 2 0.02
155 109 0.98
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAG
CCGACCGAAGAGGCAAAATACGTAAGCCGAGGATCGGCCAGGTCCCCAATGCATGCTGTCGATCC
TGCTACTGGTCTTGCTACTCCGTAT
Found at i:13088545 original size:26 final size:26
Alignment explanation
Indices: 13088516--13088568 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13088506 CCGATCCCAT
* *
13088516 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
13088542 CTTAGGCTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
13088568 C
1 C
13088569 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:13093412 original size:26 final size:26
Alignment explanation
Indices: 13093361--13093413 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13093351 GGCTCAAAAT
*
13093361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13093387 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13093413 C
1 C
13093414 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13093715 original size:26 final size:26
Alignment explanation
Indices: 13093677--13093729 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13093667 GGCTCAAAAT
13093677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13093703 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13093729 C
1 C
13093730 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13093794 original size:316 final size:317
Alignment explanation
Indices: 13093303--13093900 Score: 851
Period size: 316 Copynumber: 1.9 Consensus size: 317
13093293 TACCTCAAGC
13093303 GAAAAAAATGCGGCACCAGCACATGCCCGGGCCCAGCATGTGCACAGTGGCTCAAAATCTTAGAC
1 GAAAAAAATGCGGCACCAGCACATGCCCGGGCCCAGCATGTGCACAGTGGCTCAAAATCTTAGAC
* * *
13093368 TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCTACGAAAT
66 TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACGAAAC
* * * * * *
13093433 GAGCGTGCGGGTGCTCAACCGATCGGATAGGTAGAATGCGCAAGCTAGGGATCGGCCCGA-TCCC
131 AAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATC-GACCGAGTCCC
* * *
13093497 CCC-TGCGTGCTGTCGATCCTGAAGCCGCAACCCTCGGTCTGATCTGATCTTACACTGGGAATGA
195 CCCATGCGTGCTGTCAATCCTGAAGCCACAACCCTCGGTCTGATCAGATCTTACACTGGGAATGA
*
13093561 ACTCCGTACGCATAAGTGAACCCTGCTCCGGCGATGCTCCGACGATGGCGCCCCAGGT
260 ACTCCGTACGCATAAGTCAACCCTGCTCCGGCGATGCTCCGACGATGGCGCCCCAGGT
* * * *
13093619 GAAAAGAATGCGGCACCAGCACATGCCTGAGG-CTAGCATGTGCACCGTGGCTCAAAATCTTAGA
1 GAAAAAAATGCGGCACCAGCACATGCCCG-GGCCCAGCATGTGCACAGTGGCTCAAAATCTTAGA
*
13093683 CTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA
65 CTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACGAAA
* * * * * *
13093748 CAAGCGTGTGGGCGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCTGGGGATCGACCTAGTCCC
130 CAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCGAGTCCC
* * ** * * * * *
13093813 CCCATGTGTGCTGTCAATCTTGCTGCCATACCCCTTGGTCTGGTCAGATCTTAGACTGGGAATGA
195 CCCATGCGTGCTGTCAATCCTGAAGCCACAACCCTCGGTCTGATCAGATCTTACACTGGGAATGA
*
13093878 ACTCCGTATGCATAAGTCAACCC
260 ACTCCGTACGCATAAGTCAACCC
13093901 ACGAAATGAG
Statistics
Matches: 245, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
315 4 0.02
316 169 0.69
317 72 0.29
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.20
Consensus pattern (317 bp):
GAAAAAAATGCGGCACCAGCACATGCCCGGGCCCAGCATGTGCACAGTGGCTCAAAATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACGAAAC
AAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCGAGTCCCC
CCATGCGTGCTGTCAATCCTGAAGCCACAACCCTCGGTCTGATCAGATCTTACACTGGGAATGAA
CTCCGTACGCATAAGTCAACCCTGCTCCGGCGATGCTCCGACGATGGCGCCCCAGGT
Found at i:13093996 original size:159 final size:159
Alignment explanation
Indices: 13093702--13094130 Score: 479
Period size: 159 Copynumber: 2.7 Consensus size: 159
13093692 AACTCCGTAT
* * **
13093702 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * **
13093767 CCGGCCGGAGAGGCAGAATGTGCAAGCTGGGGATCGACCTAGTCCCCCCATGTGTGCTGTCAATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCATGCGTGCTACCAATC
* * **
13093832 TTGCTGCCATACCCCTTGGTCTGG-TCAGA
131 TTGCTGCCACAACCCTCAGTCTGGCT-AGA
* * * * *
13093861 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * *
13093925 GCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTC-TGCGTGCTACCGA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCC-CATGCGTGCTACCAA
* *
13093989 T-TCTGCTGCCACAACCCTCAGTCTGGCTGGG
129 TCT-TGCTGCCACAACCCTCAGTCTGGCTAGA
* * * * *
13094020 GGTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
13094085 CCGGCCGGAGAGGCAGAATGCACAAGTTGAGGATCAACCCAGTCCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCC
13094131 TGTTGTGTGC
Statistics
Matches: 220, Mismatches: 45, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 2 0.01
159 215 0.98
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCATGCGTGCTACCAATC
TTGCTGCCACAACCCTCAGTCTGGCTAGA
Found at i:13094413 original size:26 final size:26
Alignment explanation
Indices: 13094375--13094427 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13094365 CTGGTCCAAT
13094375 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13094401 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13094427 C
1 C
13094428 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13094513 original size:196 final size:196
Alignment explanation
Indices: 13094158--13094521 Score: 496
Period size: 196 Copynumber: 1.9 Consensus size: 196
13094148 CCTACTACCG
* * * * * *
13094158 CAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAAC
1 CAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
* ** * *
13094223 TCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTTAGCCGACCGGAGAGGTAGAAT
66 TCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGACCGGAGAGGTAGAAT
** * ** *
13094288 GCGTAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGCCAATCCTACTGCCAGTCCTATTGTC
131 GCACAAGCCGAGGATCAACCCGATCCCCCCTGCGTGCTGCCAATCCTACTGCCAGTCCTATTGTC
13094353 A
196 A
13094354 CAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAA
1 CAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAA
** * * * *
13094418 CTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTATGGGTGCTCAGCCGATCGGAGAGGTAGAA
65 CTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGACCGGAGAGGTAGAA
*
13094483 TGCACAAGTCGAGGATCAACCCGATCCCCCCTGCGTGCT
130 TGCACAAGCCGAGGATCAACCCGATCCCCCCTGCGTGCT
13094522 ATCTATCCTG
Statistics
Matches: 143, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
195 1 0.01
196 142 0.99
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (196 bp):
CAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
TCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGACCGGAGAGGTAGAAT
GCACAAGCCGAGGATCAACCCGATCCCCCCTGCGTGCTGCCAATCCTACTGCCAGTCCTATTGTC
A
Found at i:13100543 original size:26 final size:26
Alignment explanation
Indices: 13100491--13100543 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13100481 TCGATCTGAT
* *
13100491 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGAATG
* *
13100517 CTTAGATTGGGGATGAACTCCGAATG
1 CTTAGAATGGGAATGAACTCCGAATG
13100543 C
1 C
13100544 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGAATG
Found at i:13101628 original size:159 final size:157
Alignment explanation
Indices: 13101241--13101649 Score: 419
Period size: 158 Copynumber: 2.6 Consensus size: 157
13101231 AACTCCGTAT
* * * *
13101241 GCTTACACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * ** * * ** *
13101306 CCGGCCGAAGAGGCAAAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCTGTGTGTTGTCAATCT
66 CCGACCGAAGAGGCATAATGC-CAAGCCGAAGATCGACCCAGTCCCCCCTGCGTGCTACCAATCC
* ** * * *
13101371 TGCTACTGCAACCCTCGGTCTGGTCTGA
130 CGCTACCACAACACTCGGTCCGATCTGA
* * * * * * * *
13101399 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTACGAGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
**
13101463 GCCGACCGAAGAGGCATAATGCACAAGCCGAAGATCGACCCAGTCCCCCTCTGCGTGCTACCGGT
65 GCCGACCGAAGAGGCATAATGC-CAAGCCGAAGATCGACCCAGTCCCCC-CTGCGTGCTACCAAT
* *
13101528 CCCGCTGCCACAACACTCGGTCCGAT-TAGC
128 CCCGCTACCACAACACTCGGTCCGATCT-GA
* * *
13101558 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
*
13101623 TCGACCAGAA-AGGCATAATGCCAAGCC
66 CCGACC-GAAGAGGCATAATGCCAAGCC
13101650 AGGGATCAAC
Statistics
Matches: 201, Mismatches: 45, Indels: 10
0.79 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 100 0.50
159 96 0.48
160 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCATAATGCCAAGCCGAAGATCGACCCAGTCCCCCCTGCGTGCTACCAATCCC
GCTACCACAACACTCGGTCCGATCTGA
Found at i:13101928 original size:26 final size:26
Alignment explanation
Indices: 13101899--13101951 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13101889 CCGGTCCGAT
13101899 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13101925 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13101951 C
1 C
13101952 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13102367 original size:158 final size:157
Alignment explanation
Indices: 13101924--13102368 Score: 425
Period size: 157 Copynumber: 2.8 Consensus size: 157
13101914 AACTCCGTAT
* * * * * *
13101924 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCATTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA-CGATGAAATGAGCATGCGGGCACTCAG
* * * * * * * * *
13101989 CCGGTCGGAGAGGTAAAAAGCAAAAGTCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCC
65 CCGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * *
13102054 TGCTGCCACAACCTTCGGTCTGGTCTGA
130 CGCTGCCACAACCCTCGGTCTAGTCTGA
* * * * *
13102082 TCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCGATG-AATGAG-AGTGCGGGCTCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA-CGATGAAATGAGCA-TGCGGGCACTC
* * * ** * *
13102144 AGCTGATCGGAGAGGCATAATGCACAAGCCGAGGATCGGCTTGGTTCCCTCTGCGTGCTGCCGAT
63 AGCCGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGAT
* *
13102209 CCCGCTGCCATAACCCTCGGT-TCAG-CTAGG
128 CCCGCTGCCACAACCCTCGGTCT-AGTCT-GA
* * *
13102239 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGTACGAAATGGGCATAG-GGGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACG-ATGAAATGAGCAT-GCGGGCACTCA
* * * *
13102303 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGTGTGCTGCCGATC
64 GCCGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
13102368 C
129 C
13102369 TACTGTTGCA
Statistics
Matches: 228, Mismatches: 50, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.02
157 115 0.50
158 106 0.46
159 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACGATGAAATGAGCATGCGGGCACTCAGC
CGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCC
GCTGCCACAACCCTCGGTCTAGTCTGA
Found at i:13103155 original size:26 final size:26
Alignment explanation
Indices: 13103117--13103169 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13103107 GGCTTAAAAT
*
13103117 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13103143 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13103169 C
1 C
13103170 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13103338 original size:26 final size:26
Alignment explanation
Indices: 13103302--13103354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13103292 CCAGTCCAAT
13103302 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
13103328 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13103354 C
1 C
13103355 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13104065 original size:26 final size:26
Alignment explanation
Indices: 13104026--13104078 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13104016 GGCTCAAAAT
13104026 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13104052 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
13104078 C
1 C
13104079 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13104407 original size:159 final size:156
Alignment explanation
Indices: 13104051--13104478 Score: 452
Period size: 159 Copynumber: 2.7 Consensus size: 156
13104041 AACTCCGTAT
* ** *
13104051 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACTAACGTAAGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAAC-AACGTGCGGGCGCTCAG
* * *
13104116 CC-AGCCGGAGAGGCAGAATGCTCAAGCC-AGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
65 CCGA-CCGAAGAGGCAGAATGCT-AAGCCGA-GGATCGGCCCGGTCCCCCCTACGTGCTGCCGAT
* * *
13104179 CTTGCTGCCATAACCCTCAGTCCGATCTGA
127 CCTGCTGCCACAACCCTCAGTCCGAGCTGA
* * * * * * *
13104209 TCTTACAC-TGAGAATGAACTCCATATGCATAAGTCAACCCAGGAAACGAACGTGCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGACAACCCACGAAAC-AACGTGCGGGCGCTCA
* *
13104273 GCCGACCGAAGAGGCATAATGCGTAAGCCGAGGATCAGG-CCGGTCCCCCTCTACGTGCTGCCGG
64 GCCGACCGAAGAGGCAGAATGC-TAAGCCGAGGATC-GGCCCGGTCCCCC-CTACGTGCTGCCGA
* * *
13104337 TCCTGCTGCCACAACCCTCGGTCTG-GCTGGG
126 TCCTGCTGCCACAACCCTCAGTCCGAGCT-GA
* * *
13104368 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACA-ACGTGCGGGCGCTCAG
* * * *
13104433 TCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCC
65 CCGACCGAAGAGGCAGAATGC-TAAGCCGAGGATCGGCCCGGTCCC
13104479 TCCTGTGTGC
Statistics
Matches: 223, Mismatches: 37, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
157 2 0.01
158 93 0.42
159 126 0.57
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACAACGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCTAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTG
CTGCCACAACCCTCAGTCCGAGCTGA
Found at i:13104868 original size:355 final size:343
Alignment explanation
Indices: 13104222--13105332 Score: 1083
Period size: 355 Copynumber: 3.3 Consensus size: 343
13104212 TACACTGAGA
* * * * * * * * *
13104222 ATGAACTCCATATGCATAAGTCAACCCAGGAAACGAACGTGCGGGTGCTGAGCC-GACCGAAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAG-TCGGAGAG
*
13104286 GCATAATGCGTAAGCCGAGGATCAGGCCGGTCCCCCTCTAC--G-TG-CTGCCGGTCCTGCTGCC
65 GCATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCTGCCGGTCCTGCTGCC
13104347 ACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
130 ACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
** * *
13104412 AACAGGCGTGCGGGCGCTCAGTCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTC
195 ATGA-GTGTGCGGGCGCTCAGTCGGTCG-AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTC
* * * *
13104477 CCTCCTGTGTGCTGTCAATCCTACTGTCGCAACCCTCGGTCTGGTTCGATCTTAGACTGAGATTG
258 CCCCCTGCGTGCTGTCGATCCTACTGTCGTAACCCTCGGTCTGGTTCGATCTTAGACTGAGA-TG
13104542 AACTCCGTATGCTTAGACCGGGG
322 AACTCCGTATGCTTAGACC-GGG
* * * *
13104565 ATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCACCCAGTCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGTCGGAGAGG
13104630 CATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCCACTGCCGGTCC
66 CATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCT---G-T----CTGCCGGTCC
** ** * *
13104695 TATTGCCACAACCCTCAATCTGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAA
123 TGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
13104760 CCCATGAATTGAGTGTACGGGCGCTCAGTCGGTCAGAGAAGCAGAATGCGCAAGCCGGGGACCGG
188 CCCACGAA-TGAGTGTGCGGGCGCTCAGTCGGTC-GAGAGGCAGAATGCACAAGCCGGGGATCGG
* ** * *
13104825 CCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGTAACCCTCAGTCT-GATCAGATCTTAGAC
251 CCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGTAACCCTCGGTCTGGTTC-GATCTTAGAC
13104889 T-AG--G-A------ATG---A-A-C---
315 TGAGATGAACTCCGTATGCTTAGACCGGG
* * * * * *
13104900 -T---CT--GTATGCCTAAGTCAACCCACGAAATGAGCTTGCGGGCGCTGAGTCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGTCGGAGAGG
* * * * *
13104959 CATAATGTGCAAGCCGAGGATCGGCCCGGT-CCCCT-T--TTGCT-TGCTGCCGGTCCCGCTGCC
66 CATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGT-CTGCCGGTCCTGCTGCC
* *
13105019 ATAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
130 ACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-
* * * * * * * * *
13105084 AATGGGTGTGCGGGTGCTCAGCCTGCTGGAGAGGTAGAATGCATAATCCGAGGATCGGCCCGGTC
194 AATGAGTGTGCGGGCGCTCAGTC-GGTCGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTC
* * * * *
13105149 CCCCCTTCGTGCTATCGATCCTACTGTCATAACCCTCGAT-TCGGTCCGATCTTAGACTG-GAAT
258 CCCCCTGCGTGCTGTCGATCCTACTGTCGTAACCCTCGGTCT-GGTTCGATCTTAGACTGAG-AT
* *
13105212 GAACTCCGTATGCTTAGGCTAGGG
321 GAACTCCGTATGCTTAGAC-CGGG
* **
13105236 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGTTAGTCGGAGA-G
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGTCGGAGAGG
* * * * *
13105300 TAGAATGCATAAGCCGGGGATCAGCTCGGTCCC
66 CATAATGCGTAAGCCGAGGATCAGCCCGGTCCC
13105333 TCCCTGCGTG
Statistics
Matches: 619, Mismatches: 102, Indels: 95
0.76 0.12 0.12
Matches are distributed among these distances:
316 1 0.00
317 162 0.26
318 6 0.01
320 2 0.00
321 1 0.00
325 4 0.01
327 4 0.01
328 5 0.01
329 73 0.12
330 1 0.00
331 2 0.00
334 1 0.00
337 1 0.00
339 1 0.00
340 3 0.00
341 24 0.04
342 49 0.08
343 90 0.15
344 4 0.01
345 1 0.00
346 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
354 5 0.01
355 173 0.28
356 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (343 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGTCGGAGAGG
CATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCTGCCGGTCCTGCTGCCA
CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
TGAGTGTGCGGGCGCTCAGTCGGTCGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCC
CCTGCGTGCTGTCGATCCTACTGTCGTAACCCTCGGTCTGGTTCGATCTTAGACTGAGATGAACT
CCGTATGCTTAGACCGGG
Found at i:13104984 original size:158 final size:158
Alignment explanation
Indices: 13104724--13105224 Score: 530
Period size: 159 Copynumber: 3.2 Consensus size: 158
13104714 CTGGCTGGGG
* * *
13104724 CTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAATTGAGTGTACGGGCGCTCAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
* * * * *
13104788 TCGGTCAGAGAAGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
13104853 TACTACCGTAACCCTCAGTCTGATCAGAT
131 TACTGCCATAACCCTCAGTCTG-TCAGAT
* * *
13104882 CTTAGACTA-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCT-TGCGGGCGCTGA
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-TGTGCGGGCGCTCA
* * ** * * *
13104945 GTCGGTCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGGTCCCCTTTTGCTTGCTGCCGGT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCC-CCTGCGTGCTGTCGAT
** * * **
13105010 CCCGCTGCCATAACCCTCGGTCTGGCTAGGG
129 CCTACTGCCATAACCCTCAGTCTGTC-AGAT
* * *
13105041 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGTGCTCAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
* * * ** * * *
13105105 CCTG-CTGGAGAGGTAGAATGCATAATCCGAGGATCGGCCCGGTCCCCCCTTCGTGCTATCGATC
66 TCGGTC-GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * * *
13105169 CTACTGTCATAACCCTCGATTCGGTCCGAT
130 CTACTGCCATAACCCTC-AGTCTGTCAGAT
13105199 CTTAGAC--TGGAATGAACTCCGTATGC
1 CTTAGACTATGGAATGAACTCCGTATGC
13105225 TTAGGCTAGG
Statistics
Matches: 277, Mismatches: 58, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 18 0.06
158 129 0.47
159 130 0.47
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TACTGCCATAACCCTCAGTCTGTCAGAT
Found at i:13105071 original size:159 final size:158
Alignment explanation
Indices: 13104698--13105224 Score: 465
Period size: 158 Copynumber: 3.3 Consensus size: 158
13104688 CCGGTCCTAT
* * * *
13104698 TGCCACAACCCTCAATCTGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TGCCATAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
13104763 ATGAATTGAGTGTACGGGCGCTCAGTCGGTCAGAGAAGCAGAATGCGCAAGCCGGGGACCGGCCC
66 ACGAAATGAGTGTACGGGCGCTCAGTCGGTCAGAGAAGCAGAATGCGCAAGCCGAGGACCGGCCC
* *
13104828 GATCCCCCCTGCGTGCTGTCGATCCTAC
131 GATCCCCCCTGCGTGCTGCCGATCCCAC
* * * ** * *
13104856 TACCGTAACCCTCAGTCT-GATCAGATCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAAC
1 TGCCATAACCCTCAGTCTGGCT-AGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
13104919 CCACGAAATGAGCT-TGCGGGCGCTGAGTCGGTCGGAGAGGCATAATGTGCAAGCCGAGGATCGG
64 CCACGAAATGAG-TGTACGGGCGCTCAGTCGGTCAGAGAAGCAGAATGCGCAAGCCGAGGACCGG
* ** * * *
13104983 CCCGGTCCCCTTTTGCTTGCTGCCGGTCCCGC
128 CCCGATCCCC-CCTGCGTGCTGCCGATCCCAC
* *
13105015 TGCCATAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCATAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * * ** * *
13105080 ACGAAATGGGTGTGCGGGTGCTCAGCCTG-CTGGAGAGGTAGAATGCATAATCCGAGGATCGGCC
66 ACGAAATGAGTGTACGGGCGCTCAGTCGGTC-AGAGAAGCAGAATGCGCAAGCCGAGGACCGGCC
* * ** *
13105144 CGGTCCCCCCTTCGTGCTATCGATCCTAC
130 CGATCCCCCCTGCGTGCTGCCGATCCCAC
* * * **
13105173 TGTCATAACCCTCGATTC-GG-TCCGATCTTAGAC-TGGAATGAACTCCGTATGC
1 TGCCATAACCCTC-AGTCTGGCT-AGGGCTTAGACATGGAATGAACTCCGTATGC
13105225 TTAGGCTAGG
Statistics
Matches: 294, Mismatches: 65, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 22 0.07
158 144 0.49
159 125 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
TGCCATAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAATGAGTGTACGGGCGCTCAGTCGGTCAGAGAAGCAGAATGCGCAAGCCGAGGACCGGCCC
GATCCCCCCTGCGTGCTGCCGATCCCAC
Found at i:13105227 original size:25 final size:26
Alignment explanation
Indices: 13105199--13105250 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13105189 TCGGTCCGAT
13105199 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
13105224 CTTAGGCTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13105250 C
1 C
13105251 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13105896 original size:26 final size:26
Alignment explanation
Indices: 13105867--13105919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13105857 CTGGTCTGAT
*
13105867 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13105893 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13105919 C
1 C
13105920 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13107156 original size:26 final size:26
Alignment explanation
Indices: 13107127--13107179 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13107117 CCAGTCCGAT
13107127 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
13107153 CTTATACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13107179 C
1 C
13107180 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13107454 original size:159 final size:159
Alignment explanation
Indices: 13107161--13107561 Score: 389
Period size: 159 Copynumber: 2.5 Consensus size: 159
13107151 TGCTTATACA
* * * *
13107161 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACCCAACCGATCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAA
* * * * *
13107226 GAAGTAGAATGTGCAAGTAGTGGACTGGCTCGGTCCCCTCCTACATGCTATCGATCCTACTACCG
66 GAAGCAGAATGCGCAAGTAGAGGACTGGCCCGGTCCCCTCCTACATGCTATCGATCCTACTACCA
* * * * *
13107291 CAACCCTTGATTCGATTTGATCTTAG-AT
131 CAACCCTCGATGCGACTGGAGCTTAGAAT
* * * * * *
13107319 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCTGATCGA
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGA
* * * * * *
13107384 AGAGGCATAATGCGCAAGTCGAGGA-TCGGCCCGGTACCCCT-CTGCGTGCTGTCGAT-CTCACT
65 AGAAGCAGAATGCGCAAGTAGAGGACT-GGCCCGGT-CCCCTCCTACATGCTATCGATCCT-ACT
* *
13107446 ACCACAACCCTCGGTGCGACTGGGGCTTAGACAT
127 ACCACAACCCTCGATGCGACTGGAGCTTAGA-AT
* * * * * ** *
13107480 T-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAGCCGGCCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAA
*
13107544 GAAGCAGAATGCGAAAGT
66 GAAGCAGAATGCGCAAGT
13107562 CATGGATTGG
Statistics
Matches: 195, Mismatches: 42, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
158 4 0.02
159 183 0.94
160 5 0.03
161 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAA
GAAGCAGAATGCGCAAGTAGAGGACTGGCCCGGTCCCCTCCTACATGCTATCGATCCTACTACCA
CAACCCTCGATGCGACTGGAGCTTAGAAT
Found at i:13107842 original size:26 final size:26
Alignment explanation
Indices: 13107813--13107865 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13107803 CCGATTCGAT
13107813 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13107839 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13107865 C
1 C
13107866 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13108232 original size:26 final size:26
Alignment explanation
Indices: 13108194--13108246 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13108184 CTGGTTTGAT
13108194 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13108220 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
13108246 C
1 C
13108247 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.