Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 67 of 138
Found at i:13108635 original size:159 final size:158
Alignment explanation
Indices: 13108379--13108681 Score: 358
Period size: 159 Copynumber: 1.9 Consensus size: 158
13108369 TGATCCGATC
* * * *
13108379 TTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCC
1 TTAGACTAGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACC
* * * * * * * * *
13108444 GATCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCC-AGTCC
66 GACCAGAGAGGCAGAATACGCAACCCGAGGATCGGCCCGAGCCCCC-CTGCATGCTGCCGA-TCC
13108508 CGCTGCCACAACCCTCGGTCTGACTATGGG
129 CGCTGCCACAACCCTCGGTCTGACTATGGG
* * *
13108538 TTAGAC-ATGGAATGAACTCTCTATGCCTAAGCCAACCCATGGAATGGGCGTGCGGGTGCTCAAC
1 TTAGACTA-GGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *
13108602 TGACCAGAGAGGTAGAATACGTAACCCGAGGATCGGCCCGGGCCCCCCTGCATGCTGTCGATCCT
65 CGACCAGAGAGGCAGAATACGCAACCCGAGGATCGGCCCGAGCCCCCCTGCATGCTGCCGATCCC
*
13108667 GCTGCCGCAACCCTC
130 GCTGCCACAACCCTC
13108682 AATCCGGTCT
Statistics
Matches: 119, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 28 0.24
159 91 0.76
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
TTAGACTAGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACC
GACCAGAGAGGCAGAATACGCAACCCGAGGATCGGCCCGAGCCCCCCTGCATGCTGCCGATCCCG
CTGCCACAACCCTCGGTCTGACTATGGG
Found at i:13108724 original size:26 final size:26
Alignment explanation
Indices: 13108695--13108747 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13108685 CCGGTCTGAT
13108695 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
13108721 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13108747 C
1 C
13108748 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13109552 original size:26 final size:26
Alignment explanation
Indices: 13109522--13109574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13109512 CCGTTTCGAT
13109522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13109548 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13109574 C
1 C
13109575 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13110143 original size:11 final size:11
Alignment explanation
Indices: 13110127--13110157 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
13110117 TGGTTAGGCT
13110127 CTCCGATGATG
1 CTCCGATGATG
*
13110138 CTCCGACGATG
1 CTCCGATGATG
13110149 CTCCGATGA
1 CTCCGATGA
13110158 AGGTGCCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.19, C:0.32, G:0.26, T:0.23
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:13111140 original size:26 final size:26
Alignment explanation
Indices: 13111102--13111154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13111092 GTCTGATCTA
*
13111102 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
13111128 AGACTGGGGATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
13111154 A
1 A
13111155 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:13112015 original size:26 final size:26
Alignment explanation
Indices: 13111986--13112038 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13111976 CTGGTCTGAT
*
13111986 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
13112012 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13112038 C
1 C
13112039 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13112925 original size:159 final size:159
Alignment explanation
Indices: 13112733--13113191 Score: 406
Period size: 159 Copynumber: 2.9 Consensus size: 159
13112723 TTAGACTCAA
* * * * * *
13112733 AATGAACTCCGTATGCATAAGTCAACTCGCGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAG
1 AATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAG
* ** * * * * * * *
13112798 GCATAATGCGCCTGTCGGGGATTG-GCCTGTTCCCTCTCTACGTGCTGCCG-GCCCTGCTGCCAC
66 GCAAAATGCGCAAGTCGGGGATCGACCCCGATCCCCCT-TACATGCTGCCGAGCCC-GCTACCAC
* * **
13112861 AACCTTCAATCCGGCTGGGGCTTAGACATGG
129 AACCCTCAATCCGACTGGGGCAGAGACATGG
* * * * * ** *
13112892 AATGAACTCCCTATGCCTAATTCAACCCACGAAATGGGTGTGCGGGCACTCAGCTGGTC-AGAGT
1 AATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGA-AGA
* *
13112956 GGCAAAATGCGCAAGTCGGGGATCGACCCCGATCCCCCTTACATGCTGCCGATCCCGTTACCACA
65 GGCAAAATGCGCAAGTCGGGGATCGACCCCGATCCCCCTTACATGCTGCCGAGCCCGCTACCACA
*
13113021 ACCCTCGATCCGACTGGGGCAGAGACATGG
130 ACCCTCAATCCGACTGGGGCAGAGACATGG
* * * * *
13113051 AATGAACTCCCTATACCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGACCGGAGAG
1 AATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAG
* * * * * * * * * * **
13113116 GTAGAATGTGCAAGCCGGGGATC-AGCTCGGT-CCCCTCTGCGTGCTGCCGATCCTACTACCACA
66 GCAAAATGCGCAAGTCGGGGATCGACCCCGATCCCCCT-TACATGCTGCCGAGCCCGCTACCACA
*
13113179 ACCCTCGATCCGA
130 ACCCTCAATCCGA
13113192 TCTGATCTTA
Statistics
Matches: 239, Mismatches: 56, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 5 0.02
158 40 0.17
159 182 0.76
160 12 0.05
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
AATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAG
GCAAAATGCGCAAGTCGGGGATCGACCCCGATCCCCCTTACATGCTGCCGAGCCCGCTACCACAA
CCCTCAATCCGACTGGGGCAGAGACATGG
Found at i:13113629 original size:26 final size:26
Alignment explanation
Indices: 13113579--13113630 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13113569 TGGTCTGATT
* *
13113579 TTAGACTAGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTCCCTATGC
13113605 TTAGAC-ACGGAATGAACTCCCTATGC
1 TTAGACTA-GGAATGAACTCCCTATGC
13113631 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCCTATGC
Found at i:13114061 original size:158 final size:156
Alignment explanation
Indices: 13113604--13114097 Score: 426
Period size: 158 Copynumber: 3.1 Consensus size: 156
13113594 ACTTCGTATG
* * * *
13113604 CTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAGC
* * * * * *
13113669 TGACCGGAGAGGCAGAATGCGCAAGTC-AGGGATTGGCCCGGTCCCCCCTGTGTGCTATCGATCT
66 -AACCGGAGAGGCAGAATGCGCAAGTCGA-GGATTGGCTCGGTCCCCTCTGCGTGCTGTCGATCC
* * *
13113733 TGCTGCTGTAACCGTCGGTCCGGTCTAAT
129 TGCTGC-GCAACCCTCGGTCTGGTCTAAT
*** * ** * * *
13113762 CTTAGAC-TAGGAATGAACTATGTATGCCTAAGTCAACCCACAAAATGAGCATACAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAG
** * ** * * * * *
13113826 CCGCCGGAGAGGCATAATGCGCAAACCGGGGATCGG-TCTGATCCCCCTCTACGTGCTGTCGGTA
65 CAACCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTC-GGT-CCCCTCTGCGTGCTGTCGAT-
* * *
13113890 CC-ACTGCCACAACCCTCAGTCTGG-CTAGGA-
127 CCTGCTG-CGCAACCCTCGGTCTGGTCTA--AT
* *
13113920 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAATGGGCATACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAGC
* * *
13113985 AAACTGGAGAGGCAGAATGCGTAAGTCGAGGATTGGCTCGGTCCCTTCTGCGTGCTGTCGATCCT
66 -AACCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTCGGTCCCCTCTGCGTGCTGTCGATCCT
* * *
13114050 GTTGTCGCAACCCTCGGTCTAGTCTGAT
130 GCTG-CGCAACCCTCGGTCTGGTCTAAT
*
13114078 CTTAGA-TTGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
13114098 TGTATGTTTA
Statistics
Matches: 255, Mismatches: 66, Indels: 30
0.73 0.19 0.09
Matches are distributed among these distances:
156 1 0.00
157 36 0.14
158 182 0.71
159 34 0.13
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAGC
AACCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTCGGTCCCCTCTGCGTGCTGTCGATCCTG
CTGCGCAACCCTCGGTCTGGTCTAAT
Found at i:13114127 original size:25 final size:26
Alignment explanation
Indices: 13114079--13114128 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
13114069 TAGTCTGATC
* *
13114079 TTAGATTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
13114105 TTAGACTGGG-ATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13114129 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:13120685 original size:26 final size:26
Alignment explanation
Indices: 13120647--13120699 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13120637 GGCTCAAAAT
13120647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13120673 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13120699 C
1 C
13120700 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13121405 original size:26 final size:26
Alignment explanation
Indices: 13121367--13121419 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13121357 CTGGTCCAAT
13121367 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13121393 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13121419 C
1 C
13121420 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13121903 original size:26 final size:26
Alignment explanation
Indices: 13121867--13121919 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13121857 CCGATGCGAT
13121867 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
13121893 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13121919 C
1 C
13121920 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13122131 original size:500 final size:499
Alignment explanation
Indices: 13121346--13122248 Score: 1182
Period size: 500 Copynumber: 1.8 Consensus size: 499
13121336 CCTGCTGCCA
* *
13121346 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * * * * *
13121411 TTCGTATGCCAAAGCCAACCCACAAAATGAGCGTACAGGCACTCAACCGGCTAGAGAGGTAGAAT
66 TTCGTATGCCAAAGCCAACCCACAAAACGACCATACAGGCACTCAACCGACCAGAGAGGCAGAAA
* *
13121476 GCACAAGCCGGGGATCGACCCGATCCCCCCAGCGTGTTATCGATCCTACTGCTGCAACCCTCGGT
131 GCACAAGCCGGGGATCGACCCGATCCCCCCAGCATGCTATCGATCCTACTGCTGCAACCCTCGGT
* * * *
13121541 CCCATCCGATCATAGATTGGGAATGAACTTCGTATCCATAAGTCAACCCATGAAACGAGCGTGCG
196 CCCATCCGATCATAGACTGGGAATGAACTCCGTATCCATAAGTCAACCCATGAAACGAGAGTGCA
* * *
13121606 GGCGCTGAGCCAGTCGAAGAGGCATAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCTGCGTG
261 GGCGCTGAGCCAGCCAAAGAGGCATAATGCGCAAGCC-AGGATCAACCCAGTCCCCCTCTGAGTG
* * * *
13121671 CTGTAGGTCCCGCTACCACAACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCCTAT
325 CTATAGGTCCCACTACCACAACCCTC-ATCTCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
*
13121735 GCCTAAGCCAACCCACAAAATGGGAGTACAGGTGCTCAGCCGACAAGAAAGGCAGAATGCGCAAG
389 GCCGAAGCCAACCCACAAAATGGGAGTACAGGTGCTCAGCCGACAAGAAAGGCAGAATGCGCAAG
13121800 TCAGGGATCGGTCCATCCCTTCTACGTGTTGTCGATCCTGCTGTTG
454 TCAGGGATCGGTCCATCCCTTCTACGTGTTGTCGATCCTGCTGTTG
* * * *
13121846 CAACCCTCGGTCCGATGCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAA
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAA
* * ** * * **
13121910 CTTCGTATGCCTAAGTCAACCCATGAAACGACCATGCGGGCGGTCAACCGACCAGAGAGGCAGAA
65 CTTCGTATGCCAAAGCCAACCCACAAAACGACCATACAGGCACTCAACCGACCAGAGAGGCAGAA
** * * * ** * * * *
13121975 AGTGCAAGCTGGGGATCGACTCGGTCCCCCTTGCATGCTGTCGATCTTGCT-ATCGCAACCCTCG
130 AGCACAAGCCGGGGATCGACCCGATCCCCCCAGCATGCTATCGATCCTACTGCT-GCAACCCTCG
*** * * * *
13122039 GTCTGGTTCGATCTTAGACTGTGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGAGTG
194 GTCCCATCCGATCATAGACTGGGAATGAACTCCGTATCCATAAGTCAACCCATGAAACGAGAGTG
* * * *
13122104 CAGGTGCTGTGCCAGCCAAAGAGGCATAATGCGCAAGCCAGGATCAGCCCGGTCCCCCTCTGAGT
259 CAGGCGCTGAGCCAGCCAAAGAGGCATAATGCGCAAGCCAGGATCAACCCAGTCCCCCTCTGAGT
* * * *
13122169 GCTATTGGTCCCACTGCCACAACCCTCATTTCAGCTGGGGCTTGGACATGGAATGAACTCCCTAT
324 GCTATAGGTCCCACTACCACAACCCTCATCTCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* *
13122234 GTCGAATCCAACCCA
389 GCCGAAGCCAACCCA
13122249 TGAAACGGGC
Statistics
Matches: 337, Mismatches: 63, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
498 2 0.01
499 91 0.27
500 244 0.72
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (499 bp):
CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
TTCGTATGCCAAAGCCAACCCACAAAACGACCATACAGGCACTCAACCGACCAGAGAGGCAGAAA
GCACAAGCCGGGGATCGACCCGATCCCCCCAGCATGCTATCGATCCTACTGCTGCAACCCTCGGT
CCCATCCGATCATAGACTGGGAATGAACTCCGTATCCATAAGTCAACCCATGAAACGAGAGTGCA
GGCGCTGAGCCAGCCAAAGAGGCATAATGCGCAAGCCAGGATCAACCCAGTCCCCCTCTGAGTGC
TATAGGTCCCACTACCACAACCCTCATCTCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
CGAAGCCAACCCACAAAATGGGAGTACAGGTGCTCAGCCGACAAGAAAGGCAGAATGCGCAAGTC
AGGGATCGGTCCATCCCTTCTACGTGTTGTCGATCCTGCTGTTG
Found at i:13122363 original size:26 final size:26
Alignment explanation
Indices: 13122327--13122379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13122317 CCGGTCCGAT
*
13122327 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13122353 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13122379 C
1 C
13122380 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13122720 original size:26 final size:26
Alignment explanation
Indices: 13122682--13122734 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13122672 TCAATCCAAT
13122682 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13122708 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
13122734 C
1 C
13122735 CTAAGCCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13123051 original size:159 final size:160
Alignment explanation
Indices: 13122707--13123070 Score: 382
Period size: 159 Copynumber: 2.3 Consensus size: 160
13122697 AACTCCGTAT
* * *
13122707 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCACGAAACGAGAGTGTGTGCGGGCGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGA--GTGTACGGGCAC
* * **
13122772 TCAGTCGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCTGGTCACCCCCTTAGGTGCTAT
64 TCAGTCGACCAGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGGTCACCCCCTTACATGCTAT
* * *
13122837 CGATCCTGCTATCGCAACCCTCCGTCCGATCC
129 CGATCCCGCTACCACAACCCTCCGTCCGATCC
*
13122869 GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-A-TGTACGGGCA
1 G--CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGTACGGGCA
* * * ** * *
13122931 TTGAG-CAGACCAGAGAGGCATAATGTGCAAGCCGGGGATTGGCCCGGT--CCCCCTCTACATGC
63 CTCAGTC-GACCAGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGGTCACCCCCT-TACATGC
* * * *
13122993 TATCGGTCCCGCTGCCACAACCCT-CGATCCGGCTGGC
126 TATCGATCCCGCTACCACAACCCTCCG-TCC-GAT-CC
*
13123030 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
13123071 TAGAACGGGC
Statistics
Matches: 169, Mismatches: 24, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
158 8 0.05
159 64 0.38
160 48 0.28
161 2 0.01
162 1 0.01
163 2 0.01
164 44 0.26
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGTACGGGCACTC
AGTCGACCAGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGGTCACCCCCTTACATGCTATCG
ATCCCGCTACCACAACCCTCCGTCCGATCC
Found at i:13123225 original size:26 final size:26
Alignment explanation
Indices: 13123189--13123241 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13123179 CTGGTCTGAT
13123189 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
13123215 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13123241 C
1 C
13123242 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13124238 original size:159 final size:159
Alignment explanation
Indices: 13123934--13124357 Score: 457
Period size: 159 Copynumber: 2.7 Consensus size: 159
13123924 GTGGCTCAAT
* * * *
13123934 ATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
13123999 GCTGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCTCACCCTACGTGCTGTCGAT
66 GCCGGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCTCAATCTCACCCTACGTGCTCTCGAT
* * ** *
13124064 CCTGCTATCGTAACCCTC-GATCCAGTCT-G
131 CCCGCTACCACAACCCTCAG-TCC-GACTGG
* * * * *
13124093 ATCTTAGACTAGGAATGAACTCCCAATGCATAAGTCAACCCATGAAACGAGTGTACGGGCGCTGA
1 ATCTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
*
13124158 GCCGGTCGAAGAGGCATAATGCACAAGTCGGGGATCGGCTCAATC-C-CCCTTTACGTGCATCT-
66 GCCGGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCTCAATCTCACCC--TACGTGC-TCTC
* *
13124220 GGTCCCGCTGCCACAACCCTCAGTCCGACTGG
128 GATCCCGCTACCACAACCCTCAGTCCGACTGG
** * *
13124252 GGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTC
1 ATCTTAGACTA-GGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * *
13124316 AGCCGGTCGAAGGGGTAGAATGCGCAAG-CTGGGGATCAGCTC
65 AGCCGGTCGAAGAGGCAGAATGCACAAGTC-GGGGATCGGCTC
13124358 GGTAACCCTG
Statistics
Matches: 221, Mismatches: 37, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 6 0.03
159 209 0.95
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCCGGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCTCAATCTCACCCTACGTGCTCTCGAT
CCCGCTACCACAACCCTCAGTCCGACTGG
Found at i:13124440 original size:26 final size:26
Alignment explanation
Indices: 13124411--13124468 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
13124401 CCAGTCCGAT
13124411 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
** * *
13124437 CTTAAACTGGGGATGAACTCTGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
*
13124463 CCTAGG
1 CTTAGG
13124469 TCAACCCACG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCGTATG
Found at i:13124833 original size:26 final size:26
Alignment explanation
Indices: 13124795--13124847 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13124785 CTGGTTTGAT
13124795 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13124821 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13124847 C
1 C
13124848 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13125330 original size:26 final size:26
Alignment explanation
Indices: 13125294--13125346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13125284 CTGATCTGAT
*
13125294 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13125320 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13125346 C
1 C
13125347 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13125687 original size:26 final size:26
Alignment explanation
Indices: 13125636--13125688 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13125626 CCGGTCTGAT
*
13125636 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13125662 CTTAGACTAGGG-ATGAACTCCCTATG
1 CTTAGACT-GGGAATGAACTCCATATG
13125688 C
1 C
13125689 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13126396 original size:26 final size:26
Alignment explanation
Indices: 13126358--13126408 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13126348 GGCTAAAACT
13126358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13126384 CTTAGACAT-GGAATGAACTTCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
13126409 TCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13127063 original size:185 final size:183
Alignment explanation
Indices: 13126709--13127162 Score: 545
Period size: 185 Copynumber: 2.5 Consensus size: 183
13126699 TATTAGTCTG
*
13126709 GGGATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGATCGGAG
1 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATCGGAG
* * * * *
13126774 AGGCAGAATGCGTAAGTCGGAGATCGGCCTAGTCCCACCTGCGTGCTACCGATCCTGCTACCGCA
66 AGGCAGAATGCGCAAGCCGGAGACCGACCCAGTCCCACCTGCGTGCTACCGATCCTGCTACCGCA
* * *
13126839 ACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACAT
131 ACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGAC-T
* * * * * * ** *
13126893 -GGATTGAACTCCGTACGCCTAAGCCAACCCATGAAATAAGCGTGCGGGTGCTCAGTTGGTCGGA
1 GGGA-TGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATCGGA
* * **
13126957 GAGGCAGAATGCGCAAGCCAGG-GACCGACCCGGTCCCTCTCTGCGTGCTGTCGATCCTGCTACC
65 GAGGCAGAATGCGCAAGCC-GGAGACCGACCCAGTCCCAC-CTGCGTGCTACCGATCCTGCTACC
* *
13127021 GCAACACC-CGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
128 GCAAC-CCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACT
* * * * * *
13127077 GGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGACGTTCAGCCGACCAGA
1 -GGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATCGGA
* *
13127142 GAGGCAGGACGCGCAAGCCGG
65 GAGGCAGAATGCGCAAGCCGG
13127163 GGATCGAACA
Statistics
Matches: 223, Mismatches: 41, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
183 3 0.01
184 82 0.37
185 133 0.60
186 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (183 bp):
GGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATCGGAG
AGGCAGAATGCGCAAGCCGGAGACCGACCCAGTCCCACCTGCGTGCTACCGATCCTGCTACCGCA
ACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACT
Found at i:13127094 original size:26 final size:26
Alignment explanation
Indices: 13127043--13127095 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13127033 CTGATCCGAT
**
13127043 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13127069 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13127095 C
1 C
13127096 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13128097 original size:26 final size:26
Alignment explanation
Indices: 13128061--13128113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13128051 CCGGTCCGAT
13128061 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13128087 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13128113 C
1 C
13128114 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13128770 original size:26 final size:26
Alignment explanation
Indices: 13128734--13128786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13128724 TTGGTCTGAT
*
13128734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
13128760 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13128786 C
1 C
13128787 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:13129152 original size:26 final size:26
Alignment explanation
Indices: 13129114--13129166 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13129104 CCAGTCTGAT
13129114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13129140 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13129166 C
1 C
13129167 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13129434 original size:159 final size:157
Alignment explanation
Indices: 13129140--13129641 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 157
13129130 ACTCCGTATG
*
13129140 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-AGACGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGA-GCTC-A
* * * * * * * *
13129204 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGTCTGGTCCCCCCCTGCGTGCTGTCGATC
64 GCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGAT-CCCCTCTGCATGCTGTCGATC
*
13129269 TTGCTACCGCAACCCTTAGTCCGGTCTGAT
128 CTGCTACCGCAACCCTTAGTCCGGTCTGAT
* * * * * *
13129299 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCATTCGGGAGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* *
13129363 CTGGTCGGAGAGGCATG-ATGCGTAAGCTGGGGATCGACCCGATCCCTCTCTGCATGCTGTCGGT
65 C-GGTCGGAGAGGCA-GAATGCGTAAGCTGGGGATCGGCCCGATCCC-CTCTGCATGCTGTCGAT
* * **
13129427 CCCGCTACCACAACCCTT-GATCCGG-CTGGCG
127 CCTGCTACCGCAACCCTTAG-TCCGGTCT-GAT
* * * *
13129458 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
* * * * * * *
13129523 CGACTGGAGAGGCAGAATACATAAG-TCGGGGATTGGCCCGATCCCCTCTACATGCTGTTGATCC
66 GGTC-GGAGAGGCAGAATGCGTAAGCT-GGGGATCGGCCCGATCCCCTCTGCATGCTGTCGATCC
** * * * *
13129587 TGCTGTCGCAACCGTCAGTCCAGTCCGAT
129 TGCTACCGCAACCCTTAGTCCGGTCTGAT
*
13129616 CTTAGAC-TGGGATGAACTCCGTATGC
1 CTTAGACATGGAATGAACTCCGTATGC
13129642 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 53, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
157 17 0.06
158 51 0.18
159 205 0.74
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
GGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCTCTGCATGCTGTCGATCCTG
CTACCGCAACCCTTAGTCCGGTCTGAT
Found at i:13129644 original size:25 final size:26
Alignment explanation
Indices: 13129616--13129667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13129606 CCAGTCCGAT
13129616 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
13129641 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
13129667 C
1 C
13129668 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:13130319 original size:26 final size:26
Alignment explanation
Indices: 13130280--13130333 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
13130270 GGTTCGATCT
*
13130280 TAGATTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* *
13130306 TAGACTGGGGATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13130332 TA
1 TA
13130334 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:13130571 original size:26 final size:26
Alignment explanation
Indices: 13130535--13130585 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13130525 TCGATCTTAT
13130535 ACTGGGAATGAACTCCGTATGCCTAG
1 ACTGGGAATGAACTCCGTATGCCTAG
* *
13130561 ACTGGGGATGAACTTCGTATGCCTA
1 ACTGGGAATGAACTCCGTATGCCTA
13130586 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCCTAG
Found at i:13130606 original size:252 final size:252
Alignment explanation
Indices: 13130161--13130659 Score: 802
Period size: 252 Copynumber: 2.0 Consensus size: 252
13130151 GCCAACCCAC
* * * *
13130161 GAAATGGGTGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGAAAGCCGAGGATCGGCCTGG
1 GAAATGGGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAGAATGCGAAAGCCAAGGATCGACCTGG
* * *
13130226 TCCCCCCCGCGTTCTGCCAATCTTGCTACCGTAACCCTCGGTCTGGTTCGATCTTAGATTGGGAA
66 TCCCCCCCGCGTTCTGCCAATCTTACTACCGTAACCCTCGGTCTAGTTCGATCTTAGACTGGGAA
13130291 TGAACTCCGTATGCCTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGT
131 TGAACTCCGTATGCCTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGT
* * *
13130356 GCGGGCACTCAACCGGCCGGAGAGGCCAGTCAGAGAGGTAGAATACGTAAGTCGGAT
196 GCGGGCACTCAACCAGCCGAAGAGGCCAGTCAGAGAGGCAGAATACGTAAGTCGGAT
* * *
13130413 GAAATGGGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGCGAAAGCCAAGGATCGA-CTCG
1 GAAATGGGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAGAATGCGAAAGCCAAGGATCGACCT-G
* * * *
13130477 GTCCCCCCTGTGTTCTGCCGATCTTACTACCGTAACCCTCGGTCTAGTTCGATCTTATACTGGGA
65 GTCCCCCCCGCGTTCTGCCAATCTTACTACCGTAACCCTCGGTCTAGTTCGATCTTAGACTGGGA
13130542 ATGAACTCCGTATGCCTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTG
130 ATGAACTCCGTATGCCTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTG
* * *
13130607 TGCGGGCACTTAACCAGTCGAAGAGGCCGGTCAGAGAGGCAGAATACGTAAGT
195 TGCGGGCACTCAACCAGCCGAAGAGGCCAGTCAGAGAGGCAGAATACGTAAGT
13130660 AGGGGATTGG
Statistics
Matches: 226, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
251 2 0.01
252 224 0.99
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (252 bp):
GAAATGGGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAGAATGCGAAAGCCAAGGATCGACCTGG
TCCCCCCCGCGTTCTGCCAATCTTACTACCGTAACCCTCGGTCTAGTTCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGT
GCGGGCACTCAACCAGCCGAAGAGGCCAGTCAGAGAGGCAGAATACGTAAGTCGGAT
Found at i:13130790 original size:26 final size:26
Alignment explanation
Indices: 13130739--13130791 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13130729 CCGATCCGAT
* *
13130739 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
13130765 CTTAGAATTGGAATGAACTCTATATG
1 CTTAGAATGGGAATGAACTCCATATG
13130791 C
1 C
13130792 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:13131668 original size:26 final size:26
Alignment explanation
Indices: 13131639--13131691 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13131629 CCAATCCGAT
13131639 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13131665 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13131691 C
1 C
13131692 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13131928 original size:184 final size:185
Alignment explanation
Indices: 13131619--13132034 Score: 566
Period size: 184 Copynumber: 2.3 Consensus size: 185
13131609 CTGTTACCGT
** *
13131619 AACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
1 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATCGAATGAACT
* * * * *
13131684 CCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCTGACTGGAGAGGTAGAATA
66 CCGTATGCCTAAGCCAACCCACGAAAAGAACGTGCGAGCGCTCAGCTGACCGGAGAGGTAGAATA
* ** *
13131749 CGCAAGTCGGGGATCAGCCCGATCCCCCC-TGCATGCTGTCGATCCTGCTACCAC
131 CGCAAGCCAAGGATCAGCCCGATCCCCCCTTACATGCTGTCGATCCTGCTACCAC
*
13131803 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATCGAATGAACT
1 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATCGAATGAACT
* * * *
13131868 CTGTATGCCTAAGCCAACCCATGAAAAGAACGTGTGAGCGTTCAGCCTG-CCGGAGAGGTAGAAT
66 CCGTATGCCTAAGCCAACCCACGAAAAGAACGTGCGAGCGCTCAG-CTGACCGGAGAGGTAGAAT
** * ** * * *
13131932 GTGTAAGCCAAGGATTGGCCTGGTCCCCCCTTACGTGCTGTCGATCCTGCTACCAC
130 ACGCAAGCCAAGGATCAGCCCGATCCCCCCTTACATGCTGTCGATCCTGCTACCAC
* *
13131988 AACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
13132035 CTAAGTCAAC
Statistics
Matches: 202, Mismatches: 28, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
184 132 0.65
185 70 0.35
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (185 bp):
AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATCGAATGAACT
CCGTATGCCTAAGCCAACCCACGAAAAGAACGTGCGAGCGCTCAGCTGACCGGAGAGGTAGAATA
CGCAAGCCAAGGATCAGCCCGATCCCCCCTTACATGCTGTCGATCCTGCTACCAC
Found at i:13132791 original size:158 final size:158
Alignment explanation
Indices: 13132522--13132812 Score: 342
Period size: 158 Copynumber: 1.8 Consensus size: 158
13132512 CTGGCTCGGG
13132522 CTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * * * *
13132587 CGATGGGAGAGGCAAAATGTGAAAGCCAATGATAGGTCCGGCCCCCCTTGCGTGCTGTC-AGTCC
66 CGATGGAAGAGGCAAAATGTCAAAGCCAAGGATAGGTCCGACCCCCCCTGCATGCTGTCGA-TCC
13132651 TGCTGCCATAACCCTCACTCTGATCCGAT
130 TGCTGCCATAACCCTCACTCTGATCCGAT
* * * *
13132680 CTTAGAC-TAGGAATGAACTCCATATTCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACATA-GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * * *
13132744 -CTA-GCCGAAGAGGCATAATG-CACAAGTCGAGGATCGG-CTCGATCCCCCCTGCATGCTGTCG
65 CCGATG--GAAGAGGCAAAATGTCA-AAGCCAAGGATAGGTC-CGACCCCCCCTGCATGCTGTCG
13132805 ATCCTGCT
126 ATCCTGCT
13132813 ACTGGTCCTT
Statistics
Matches: 111, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
156 1 0.01
157 6 0.05
158 103 0.93
159 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGATGGAAGAGGCAAAATGTCAAAGCCAAGGATAGGTCCGACCCCCCCTGCATGCTGTCGATCCT
GCTGCCATAACCCTCACTCTGATCCGAT
Found at i:13132901 original size:26 final size:26
Alignment explanation
Indices: 13132850--13132902 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13132840 CCTGTCTGAT
* *
13132850 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13132876 CTTAGACAT-GGAATGAACTGCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13132902 C
1 C
13132903 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13133363 original size:158 final size:153
Alignment explanation
Indices: 13132876--13133375 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 153
13132866 AGTCCGTATG
* * * **
13132876 CTTAGACATGGAATGAACTGCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-ACTCAAC
* * * * * *
13132941 CGGTCGGAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGTTGTCGATCCT
65 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-GCC-GT-CCCCCTGCGTGCT-TCGATCCT
* ** * *
13133006 GCTACCACAACCCTCGGTCTGGTCTGAT
126 GCTGCTGCAACCCTCGATCCGGTCTGAT
** * * * *
13133034 CTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACGCACGAAACAAGCGTGCGGGCCT-AAC
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGACTCAAC
* * * * * * * * *
13133097 CCGACGGAGAGGCATAATACGCAAGCTGGAGATCGGCTCGTTCCCTCTCTCCGTGCTGCTAGTCC
65 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CG-TCCC-C-CTGCGTGCTTCGA-TCC
* ** **
13133162 AGCTGCTAG-AACCCTC-AGTCCGGTAGGGG
125 TGCTGCT-GCAACCCTCGA-TCCGGTCTGAT
* * * * *
13133191 CTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-ACTCAAC
13133256 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCAGTCGCCCCTGCGTGCTATCGATCCT
65 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CC-GTC-CCCCTGCGTGCT-TCGATCCT
13133321 GCTGCTGCAACCCTCGATCCGGTCTGAT
126 GCTGCTGCAACCCTCGATCCGGTCTGAT
* *
13133349 CTTAGATAGGGAATGAACTCCATATGC
1 CTTAGACATGGAATGAACTCCATATGC
13133376 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 62, Indels: 34
0.73 0.17 0.09
Matches are distributed among these distances:
155 5 0.02
156 32 0.12
157 78 0.30
158 104 0.40
159 40 0.15
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (153 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGACTCAACC
AGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGTCCCCCTGCGTGCTTCGATCCTGCTGC
TGCAACCCTCGATCCGGTCTGAT
Found at i:13134110 original size:26 final size:26
Alignment explanation
Indices: 13134072--13134150 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
13134062 GGCTCAAACT
*
13134072 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
13134098 CTTAGACATGGAATGAACTCCGTAAG
1 CTTAGACATGGAATGAACTCCGTATG
* *
13134124 CTTAGACATGGATTGAAGTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13134150 C
1 C
13134151 CTAAGCTAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13134433 original size:165 final size:166
Alignment explanation
Indices: 13134158--13134473 Score: 359
Period size: 165 Copynumber: 1.9 Consensus size: 166
13134148 TGCCTAAGCT
* * * *
13134158 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGTAGAATGTGCAAGCCGAGGATC
1 AACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATC
* * * * *
13134223 GGCCCAGTCCCCCTTGCATGCTGTCAATCCTACTACCATAACCCTCGGTCCGA-T-TAGATCTTA
66 GGCCCAGTCCCCCCTACATGCTCTCAATCCTACTACCACAACCCTCGGT-CGAGTCCA-ATCTTA
* *
13134286 GAGTGGGAATGAACTCCGTATGCTTAGACTGGGGATTC
129 GACTGGGAATGAACTCCGCATGCTTAGACTGGGGATTC
* * ** * * *
13134324 AACCCATGAAACGAGCGTGCAGGCACT-GGCCGGTCAGAGAGGCATAATGCGCAAGTCGGGGATC
1 AACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATC
* * ** * * * *
13134388 GGCCCGGTCCCCCCTACGTGCTCTTGATCTTGCTGCCACAACCCTCGGTCTAGTCCAATCTTAGA
66 GGCCCAGTCCCCCCTACATGCTCTCAATCCTACTACCACAACCCTCGGTCGAGTCCAATCTTAGA
13134453 CTGGGAATGAACTCCGCATGC
131 CTGGGAATGAACTCCGCATGC
13134474 CTAAGTCAAC
Statistics
Matches: 122, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
164 2 0.02
165 95 0.78
166 25 0.20
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (166 bp):
AACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATC
GGCCCAGTCCCCCCTACATGCTCTCAATCCTACTACCACAACCCTCGGTCGAGTCCAATCTTAGA
CTGGGAATGAACTCCGCATGCTTAGACTGGGGATTC
Found at i:13134695 original size:138 final size:138
Alignment explanation
Indices: 13134447--13134695 Score: 313
Period size: 138 Copynumber: 1.8 Consensus size: 138
13134437 CTAGTCCAAT
* *
13134447 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACAAGTGTACGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTAAGC
* ** * * *
13134512 CGACCGGAGAGGCATAATGTGCAAGCTGGGGATTGGTCCGATCCCCTTCTGTGTGCTGCCAGTCC
66 CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCTTCTGTGTGCTGCCAGTCC
13134577 GACTGGGG
131 GACTGGGG
* * *** *
13134585 CTTAGATTTGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGC-ATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCT-AA
* * *
13134649 -TCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCTATCCCC
64 GCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCC
13134696 CCTGCGTGTT
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
137 1 0.01
138 89 0.97
139 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (138 bp):
CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTAAGC
CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCTTCTGTGTGCTGCCAGTCC
GACTGGGG
Found at i:13134779 original size:26 final size:26
Alignment explanation
Indices: 13134743--13134821 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
13134733 TTGGTTAGAT
*
13134743 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
13134769 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
13134795 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
13134821 C
1 C
13134822 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:13134894 original size:13 final size:13
Alignment explanation
Indices: 13134876--13134911 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
13134866 AAGAGGTCAG
13134876 TCGGAGAGGCCGA
1 TCGGAGAGGCCGA
* *
13134889 TTGGAGAGGCCGG
1 TCGGAGAGGCCGA
13134902 TCGGAGAGGC
1 TCGGAGAGGC
13134912 AGAATGTGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.50, T:0.11
Consensus pattern (13 bp):
TCGGAGAGGCCGA
Found at i:13135073 original size:27 final size:26
Alignment explanation
Indices: 13135016--13135074 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
13135006 TTATACTAGG
***
13135016 AATGAACTCCGTATGCTTAGACATGG
1 AATGAACTCCGTATGCTTAGACAACC
*
13135042 AATGAACTCCGTATGCCTTAGCCAACC
1 AATGAACTCCGTATG-CTTAGACAACC
*
13135069 CATGAA
1 AATGAA
13135075 ACAAGCGTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTAGACAACC
Found at i:13137259 original size:159 final size:159
Alignment explanation
Indices: 13136871--13137691 Score: 678
Period size: 159 Copynumber: 5.2 Consensus size: 159
13136861 AGTCAAGGAC
* * * * * *
13136871 CCCCCTCTGCATGTTATCGGTTCC-GCTGCCACAACCCTCAG-TCTGACTGGGGCTTAGACATGG
1 CCCCCTCTGCATGCTGTCGG-TCCTGCTGCCACAACCCTCGGTTC-GGCTCGAGCTTAGACATGG
** * * * *
13136934 AATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCACTCAGCCAGCTGGAGAG
64 AATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCGGAGAG
*
13136999 GCAGAATGCGCAAGCCCG-GGATTGGCCCGGT
129 GCAGAATGCGCAAG-CCGAGGATCGGCCCGGT
* * * ** * * * * *
13137030 -CCCATTTGCGTGCTGTCAATCCTACTGCCACGACCCTCGGTTCGG-TCCGATCTTAGACTTTGA
1 CCCCCTCTGCATGCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGGCT-CGAGCTTAGACATGGA
* * * *
13137093 ATGAACTCTGTATGCCTAAGTCAACTCACGAAATAAGCGTGCGGG-AGCTGAGCC-GACCGGAGA
65 ATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCA-CTCAGCCAG-CCGGAGA
* * *
13137156 GGCATAATGTGCAAGCTGAGGATCGGCCCGGT
128 GGCAGAATGCGCAAGCCGAGGATCGGCCCGGT
* * * * *
13137188 CCCCCTCGGCATGCTGTCGGTCCCGCTGCCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAA
1 CCCCCTCTGCATGCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGGCTCGAGCTTAGACATGGAA
* * * * *
13137253 TGAACTCTGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTACTCAGTCAGCCGGAGAGGT
66 TGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCGGAGAGGC
* *
13137318 AGAATGCGCAAGCCGAGGA-CTGACCTGGT
131 AGAATGCGCAAGCCGAGGATC-GGCCCGGT
** * * * * *
13137347 CCCCGCT-TGTGTGCTGTCGATCCTGCTGCCACAACCCTCGGTTTGGTTCGATCTTAGA-TTGGG
1 CCCC-CTCTGCATGCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGGCTCGAGCTTAGACAT-GG
* * ** * ** *
13137410 AATGAACTCTGTATGCCTAAGTCAACCCATGAAACCAGTGTGCGGGTGCTGAGCC-GACCGGAGA
64 AATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAG-CCGGAGA
* * * *
13137474 GCCATAATGTGCAAGCCGGGGATCGGCCCGGT
128 GGCAGAATGCGCAAGCCGAGGATCGGCCCGGT
* * * * *
13137506 CCCTCTCTACGTGCTGTCGGTCCTG-TCGCCACAACCCTCGGTCCGGCTAC-CGCTTAGACATGG
1 CCCCCTCTGCATGCTGTCGGTCCTGCT-GCCACAACCCTCGGTTCGGCT-CGAGCTTAGACATGG
** * * * ** *
13137569 AATGAACTCCCTATGCCTAAGCCAGCCCACGTAACGAGCGTGCGGGCACTCAGCTGGTCGGAGAG
64 AATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCGGAGAG
* * * * * **
13137634 GCAGAATCCGTAAGCTGGGGATTGGCCCCAT
129 GCAGAATGCGCAAGCCGAGGATCGGCCCGGT
* * * *
13137665 CCCCCCCTGCGTGCTGCCGATCCTGCT
1 CCCCCTCTGCATGCTGTCGGTCCTGCT
13137692 ATCAGTCCCA
Statistics
Matches: 519, Mismatches: 122, Indels: 41
0.76 0.18 0.06
Matches are distributed among these distances:
157 8 0.02
158 118 0.23
159 383 0.74
160 10 0.02
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.21
Consensus pattern (159 bp):
CCCCCTCTGCATGCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGGCTCGAGCTTAGACATGGAA
TGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCCGGAGAGGC
AGAATGCGCAAGCCGAGGATCGGCCCGGT
Found at i:13137316 original size:317 final size:317
Alignment explanation
Indices: 13136613--13137680 Score: 1057
Period size: 318 Copynumber: 3.4 Consensus size: 317
13136603 AACTCTTTAA
* * * * * **
13136613 GCTTAAACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGGTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
* * * * * * * *** * * * ** *
13136678 CCGGCCGAAAAGGTAGAATGTGCAAGTCGGGGACCAGCCCAGTCCCCCCCTATGTGCTGTCTATC
66 -CAGCCGGAGAGGCAGAATGCGCAAGCCCGGGATTGGCCCGGTCCCCACTTGCGTGCTGTCAATC
* ** * * * * *
13136743 CTACTACTGCAACCATCAGTCCGATCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCA
130 CTACTGCCACAACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCA
* * ** * * * ** * *
13136808 ACCCTCGAAACGAGCGTTTGGGCGTTGAGCCGATCGGAGAGGTATAATTTGCAAGTC-A--A--G
195 ACCCACGAAACAAGCGTGCGGGAGCTGAGCCGACCGGAGAGCCATAATGTGCAAGCCGAGGATCG
* * * * * *
13136868 G-AC---CCCCCTCTGCATGTTATCGGTTCCGCTGCCACAACCCTCAG-TCTGACTGGG
260 GCCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGGTTC-GGCTGGG
* *
13136922 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
* *
13136987 CCAGCTGGAGAGGCAGAATGCGCAAGCCCGGGATTGGCCCGGT-CCCATTTGCGTGCTGTCAATC
66 -CAGCCGGAGAGGCAGAATGCGCAAGCCCGGGATTGGCCCGGTCCCCACTTGCGTGCTGTCAATC
* *
13137051 CTACTGCCACGACCCTCGGTTCGGTCCGATCTTAGACTT-TGAATGAACTCTGTATGCCTAAGTC
130 CTACTGCCACAACCCTCGGTTCGGTCCGATCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTC
* * * *
13137115 AACTCACGAAATAAGCGTGCGGGAGCTGAGCCGACCGGAGAGGCATAATGTGCAAGCTGAGGATC
194 AACCCACGAAACAAGCGTGCGGGAGCTGAGCCGACCGGAGAGCCATAATGTGCAAGCCGAGGATC
* *
13137180 GGCCCGGTCCCCCTCGGCATGCTGTCGGTCCCGCTGCCACAACCCTTGGTTCGGCTGGG
259 GGCCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGG
** * *
13137239 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
* * * * * * *
13137304 TCAGCCGGAGAGGTAGAATGCGCAAG-CCGAGGACTGACCTGGTCCCCGCTTGTGTGCTGTCGAT
66 -CAGCCGGAGAGGCAGAATGCGCAAGCCCG-GGATTGGCCCGGTCCCCACTTGCGTGCTGTCAAT
* * *
13137368 CCTGCTGCCACAACCCTCGGTTTGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTC
129 CCTACTGCCACAACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTC
* * * * *
13137433 AACCCATGAAACCAGTGTGCGGGTGCTGAGCCGACCGGAGAGCCATAATGTGCAAGCCGGGGATC
194 AACCCACGAAACAAGCGTGCGGGAGCTGAGCCGACCGGAGAGCCATAATGTGCAAGCCGAGGATC
* * * * * ***
13137498 GGCCCGGTCCCTCTCTACGTGCTGTCGGTCCTG-TCGCCACAACCCTCGGTCCGGCTACC
259 GGCCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCT-GCCACAACCCTCGGTTCGGCTGGG
* * * *
13137557 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACGTAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
* * * * ** ** * *
13137622 CTGGTCGGAGAGGCAGAATCCGTAAGCTGGGGATTGGCCCCATCCCCCCCTGCGTGCTG
66 C-AGCCGGAGAGGCAGAATGCGCAAGCCCGGGATTGGCCCGGTCCCCACTTGCGTGCTG
13137681 CCGATCCTGC
Statistics
Matches: 621, Mismatches: 121, Indels: 25
0.81 0.16 0.03
Matches are distributed among these distances:
308 111 0.18
309 90 0.14
311 1 0.00
313 2 0.00
314 1 0.00
316 3 0.00
317 137 0.22
318 275 0.44
319 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
CAGCCGGAGAGGCAGAATGCGCAAGCCCGGGATTGGCCCGGTCCCCACTTGCGTGCTGTCAATCC
TACTGCCACAACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCACGAAACAAGCGTGCGGGAGCTGAGCCGACCGGAGAGCCATAATGTGCAAGCCGAGGATCGG
CCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGG
Found at i:13138175 original size:159 final size:157
Alignment explanation
Indices: 13137754--13138182 Score: 413
Period size: 158 Copynumber: 2.7 Consensus size: 157
13137744 AACTTCGTAT
* * *
13137754 GCTTAGACATGGAATGAACT-CCATATGCCTAAGGCAACCCACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCA-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * *
13137818 ACCGACC-GAAGAGGCAGAATGCGCAAG-TCAGGGACCGGCCCGATCCCTCCTTGTGTGCTATCG
65 ACCGACCGGAA-AGGCAGAATGCGCAAGCT-GGGGATCGGCCCG-GCCCCCCTTGTGTGCTATCG
* *
13137881 ATCCTGCTACTGCAACCCTTGGTCTGATCCAA
127 ATCCCGCTACTG-AACCCTCGGTCTGATCCAA
* ** * * * *
13137913 TCTTAGAC-TGGGAATGAACTCCGTATG-CTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
13137976 ACCGACCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGGCCCCCCTTTGTGTGCTATCGGT
65 ACCGACCGGAAAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGCCCCCC-TTGTGTGCTATCGAT
* ***
13138041 CCCGCTACCATG-ACCCTCGGTCTG-GCTGGG
129 CCCGCTA-C-TGAACCCTCGGTCTGATC-CAA
* * * * *
13138071 GCTTCGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACGGGCGGGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * *
13138136 TCGGCCGGAAAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCC
66 CCGACCGGAAAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGCCCCC
13138183 TCTACATGCT
Statistics
Matches: 216, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.03
158 115 0.53
159 92 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCGACCGGAAAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGCCCCCCTTGTGTGCTATCGATCC
CGCTACTGAACCCTCGGTCTGATCCAA
Found at i:13138260 original size:26 final size:26
Alignment explanation
Indices: 13138223--13138282 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
13138213 CCTCGGTCCG
13138223 ATCCG-AT-CTTAGACT-GGGAATGAA
1 ATCCGTATGCTTAGACTAGGG-ATGAA
13138247 ATCCGTATGCTTAGACTAGGGATGAA
1 ATCCGTATGCTTAGACTAGGGATGAA
* *
13138273 CTCTGTATGC
1 ATCCGTATGC
13138283 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 21 0.68
27 3 0.10
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTAGGGATGAA
Found at i:13139327 original size:159 final size:158
Alignment explanation
Indices: 13138953--13139454 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 158
13138943 GGCTCAAAAT
* * *
13138953 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAAC
* * * * * *
13139018 CGACCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGATCCCCCATGCATGCTATCTATCCT
66 CGACCGAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCATGCATGCTATCGATCCC
** *
13139083 ACTGCTGCAACCCTCCGTTCGGTCCAAT
131 ACTGCCACAACCCTCCGTTCGGTCCAAG
* * * * * *
13139111 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAACGAAAC-GAGCGTACGGGCGCTGAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCACTCAA
* * * * * * *
13139175 CCGACCGAAAAGGCATAATGCGTAAGCTGGGGATCGACCCTATCCCCCTCTGCGTGCTGTCGGTC
65 CCGACCGAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCC-ATGCATGCTATCGATC
* * * ***
13139240 CCGCTGCCACAACCTTCGGTGT-GG-CTGGGG
129 CCACTGCCACAACCCTCCGT-TCGGTC-CAAG
* * *
13139270 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAA
* * * * *
13139334 CCGGCCGAAGAA-GCAGAATGCGCAAG-TCGGGGATC-AGCCCGATCCCCCTTACGTGCTACCGA
65 CCGACCGAA-AAGGCAGAATGCGCAAGCT-GGGGATCGA-CCCGATCCCCCATGCATGCTATCGA
* * * * * * ** *
13139396 TCCTATTGTCACAA-CCTTCGATCTGATCTGAT
127 TCCCACTGCCACAACCCTCCGTTC-GGTCCAAG
13139428 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
13139455 TTAAACTGAG
Statistics
Matches: 269, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 4 0.01
158 143 0.53
159 116 0.43
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAAC
CGACCGAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCATGCATGCTATCGATCCC
ACTGCCACAACCCTCCGTTCGGTCCAAG
Found at i:13141403 original size:26 final size:26
Alignment explanation
Indices: 13141374--13141426 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13141364 CCGATCTAAT
*
13141374 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
13141400 CTTAGACATGGAATGAACACCGTATG
1 CTTAGACATGGAATGAACACCGTATG
13141426 C
1 C
13141427 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:13141447 original size:184 final size:185
Alignment explanation
Indices: 13141216--13141585 Score: 476
Period size: 184 Copynumber: 2.0 Consensus size: 185
13141206 CTGATTGGGA
* * * *
13141216 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAAC
** * * * ** * *
13141281 CGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGCCTGGTTCC-CCC-TACATGCTGCCGATC
66 CAACCGGAGAGGCAGAATGCACAAACCGAGGATCAGCCCGG-TCCACCCTTACATGCTACCGATC
** * *
13141344 CTACTGTCGCAACCCTCGGTCC-GATCTAATCTTAGACTGGGAATGAACTCCGTATG
130 CTACTACCGCAACCCTCGGTCCAG-TCCAATCTTAGACTGGGAATGAACTCCGCATG
* *
13141400 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGC
1 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAAC
* * * *
13141465 CAATCGGAGAGGCAGAATGCACAAACCGGGGATCAGCCCGGTCCACCCTTACGTGCTATCGATCC
66 CAACCGGAGAGGCAGAATGCACAAACCGAGGATCAGCCCGGTCCACCCTTACATGCTACCGATCC
* *
13141530 TGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGCATG
131 TACTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGCATG
13141585 C
1 C
13141586 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
183 3 0.02
184 93 0.59
185 61 0.39
186 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (185 bp):
CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAAC
CAACCGGAGAGGCAGAATGCACAAACCGAGGATCAGCCCGGTCCACCCTTACATGCTACCGATCC
TACTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGCATG
Found at i:13141654 original size:159 final size:158
Alignment explanation
Indices: 13141400--13141862 Score: 474
Period size: 159 Copynumber: 2.9 Consensus size: 158
13141390 ACTCCGTATG
* * * * *
13141400 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAGC
* * * ** *
13141465 CAATCGGAGAGGCAGAATGCACAAACCGGGGATCAGCCCGGTCCACCCT-TACGTGCTATCGATC
66 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCACCCTCTA-GTGCT-TCGATC
*
13141529 CTGCTACCGCAACCCTCGGTCCAGTCCGAT
129 CTGCTACCGCAACCCTCGGTCCAGTCAGAT
* * *
13141559 CTTAGAC-TGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAG
* * * *
13141623 CCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGATCC-CGCTCTATGTGCTGTCGGT
65 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCACCCTCTA-GTGCT-TCGAT
* * * **
13141687 CCCGCTACCACAACCCTCGGTCTAG-CTAGGG
128 CCTGCTACCGCAACCCTCGGTCCAGTC-AGAT
* * * **
13141718 CTTAGACATGGAATGAACTCC-CTATACCTAAGCCAACCCACGAAAAGGGCGTGCGGGCATTCAG
1 CTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAG
* * * * *
13141782 -CAGGTTGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCTCGAT-CACCCTGT-GTGCTGCTGAT
65 CCA-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCACCCTCTAGTGCTTC-GAT
*
13141844 CATGCTACCGCAACCCTCG
128 CCTGCTACCGCAACCCTCG
13141863 ATCTGATCTA
Statistics
Matches: 251, Mismatches: 45, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
156 1 0.00
157 23 0.09
158 9 0.04
159 217 0.86
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAGC
CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCACCCTCTAGTGCTTCGATCCT
GCTACCGCAACCCTCGGTCCAGTCAGAT
Found at i:13148543 original size:26 final size:26
Alignment explanation
Indices: 13148491--13148543 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13148481 GGCTCAAAAT
*
13148491 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
13148517 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
13148543 C
1 C
13148544 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13148818 original size:159 final size:159
Alignment explanation
Indices: 13148517--13148825 Score: 383
Period size: 159 Copynumber: 1.9 Consensus size: 159
13148507 ACTTCGCATG
* * * *
13148517 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGGAAACGAGTGTGCGGGCGCTTAG
1 CTTAGACATGGAAAGAACTCCGTATGCCTAAGCTAACCCACGGAAACGAGCGTGCGAGCGATTAG
* * * * *
13148582 CCGACCGGAGAGGTAGAATTCGCAAGCCAGGGATCGGCTTGGTCCCCCCTGCGTGCTATCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCCTGCGTGCTACCGATCC
* *** *
13148647 TACTGTTGCAACCCTCGATCCGATCCGAT
131 CACTGCCACAACCATCGATCCGATCCGAT
*
13148676 CTTAGAC-TGGGAAAGAACTCCGTATGCCTAAG-TCAACCCAC-GAAATGAGCGTGCGAGC-ATT
1 CTTAGACAT-GGAAAGAACTCCGTATGCCTAAGCT-AACCCACGGAAACGAGCGTGCGAGCGATT
* *
13148737 GAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCG
64 -AGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCC-CTGCGTGCTACCG
* *
13148802 GTCCCGCTGCCACAACCATCGATC
127 ATCCCACTGCCACAACCATCGATC
13148826 TAGCTAGGGC
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
157 2 0.02
158 61 0.48
159 64 0.50
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAAAGAACTCCGTATGCCTAAGCTAACCCACGGAAACGAGCGTGCGAGCGATTAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCCTGCGTGCTACCGATCC
CACTGCCACAACCATCGATCCGATCCGAT
Found at i:13148853 original size:159 final size:156
Alignment explanation
Indices: 13148525--13148963 Score: 377
Period size: 159 Copynumber: 2.8 Consensus size: 156
13148515 TGCTTAGACA
* * *
13148525 TGGAATGAACTCCGTATGCCTAAGCTAACCCACGGAAACGAGTGTGCGGGCGCTTAGCCGACCGG
1 TGGAATGAACTCCGTATGCCTAAGC-AACCCAC-GAAACGAGCGTGCGAGCGATTAGCCGACCGG
* * * * * * ***
13148590 AGAGGTAGAATTCGCAAGCCAGGGATCGGCTTGGTCCCCCCTGCGTGCTATCGATCCTACTGTTG
64 AGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCCTGCGTGCTACCGATCCCACTGCCA
* * * * * *
13148655 CAACCCTCGATCCGATCCGATCTTAGAC
129 CAACCATCGATCAGATCAGAGCTCAAAC
* *
13148683 TGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGC-ATTGAGCCGACCG
1 T-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGAGCGATT-AGCCGACCG
* * * *
13148747 GAGAGGCATAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGC
63 GAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCC-CTGCGTGCTACCGATCCCACTGC
* *
13148812 CACAACCATCGATCTAGCT-AGGGCTCAAAC
127 CACAACCATCGATC-AGATCAGAGCTCAAAC
* * * * * * *
13148842 GTGGAATGAACT-CGCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAACC-AGCT
1 -TGGAATGAACTCCG-TATGCCTAAG-CAACCCACGAAACGAGCGTGCGAGCGATTAGCCGA-CC
* * * * *
13148905 GGAGAGGCAAAATGCGCAAGCC-GAGGATCAG-CTCGATCCCCCCTACATGCTATCGATCC
62 GGAGAGGCAGAATGCGCAAGCCAG-GGATCAGCCT-GGTCCCCCCTGCGTGCTACCGATCC
13148964 TGATGCCGCA
Statistics
Matches: 227, Mismatches: 43, Indels: 22
0.78 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 78 0.34
159 142 0.63
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
TGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGAGCGATTAGCCGACCGGAG
AGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCCTGCGTGCTACCGATCCCACTGCCACA
ACCATCGATCAGATCAGAGCTCAAAC
Found at i:13149044 original size:26 final size:26
Alignment explanation
Indices: 13148993--13149045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13148983 CCAGTCTGAT
*
13148993 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13149019 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13149045 C
1 C
13149046 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13149756 original size:26 final size:26
Alignment explanation
Indices: 13149718--13149770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13149708 GGCTCAAAAT
13149718 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
13149744 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCGTATG
13149770 C
1 C
13149771 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:13150057 original size:157 final size:156
Alignment explanation
Indices: 13149743--13150025 Score: 442
Period size: 157 Copynumber: 1.8 Consensus size: 156
13149733 AACTCCGTAT
* *
13149743 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* * ** *
13149808 TCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGGCCCCCTCTGCGTGCTGTCGGTCC
66 TCCGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGCCCCCTCTGCGTGCTGTCGATCC
*
13149873 CGCTGCCACAACCCTCAGTCCGACTGG
131 CGC-GCCACAACCCTAAGTCCGACTGG
**
13149900 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
*
13149965 TCCGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCG
66 TCCGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGG-CCCCCTCTGCGTGCTGTCG
13150026 CAATCCTCGG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
157 111 0.96
158 5 0.04
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
TCCGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGCCCCCTCTGCGTGCTGTCGATCC
CGCGCCACAACCCTAAGTCCGACTGG
Found at i:13150443 original size:26 final size:26
Alignment explanation
Indices: 13150414--13150466 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13150404 TCAATCTGAT
*
13150414 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13150440 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13150466 C
1 C
13150467 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13150956 original size:26 final size:26
Alignment explanation
Indices: 13150917--13150967 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13150907 GGTCTGATCT
*
13150917 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCATATGCG
13150943 TAGACTGTGG-ATGAACTCCATATGC
1 TAGACTG-GGAATGAACTCCATATGC
13150968 CTTAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCG
Found at i:13152021 original size:25 final size:25
Alignment explanation
Indices: 13151987--13152034 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
13151977 GTCTGGTTTG
13151987 ATCTTAGACTGGGAATGAACTCCGT
1 ATCTTAGACTGGGAATGAACTCCGT
*
13152012 ATCTTAGACTGGGGATGAACTCC
1 ATCTTAGACTGGGAATGAACTCC
13152035 ATATGCCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
ATCTTAGACTGGGAATGAACTCCGT
Found at i:13153461 original size:26 final size:26
Alignment explanation
Indices: 13153432--13153482 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13153422 CCGGTCTAAT
13153432 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13153458 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
13153483 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13153962 original size:26 final size:26
Alignment explanation
Indices: 13153933--13153985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13153923 CTGGTCTGAT
*
13153933 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
13153959 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13153985 C
1 C
13153986 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13154697 original size:26 final size:26
Alignment explanation
Indices: 13154656--13154708 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13154646 GGCTCAAAAT
13154656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13154682 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
13154708 C
1 C
13154709 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13155186 original size:196 final size:196
Alignment explanation
Indices: 13154826--13155193 Score: 474
Period size: 196 Copynumber: 1.9 Consensus size: 196
13154816 CCAATCCTAT
* *
13154826 TGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGA
1 TGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAA
* * * ** *
13154891 TGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCGCTCAGTCGACCGGAGAGGC
66 TGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGAAGAGGC
* * * *
13154956 ATAATGCACAAGTCAGTGATCGACCGAGTCCCCCCTTGCATGCAACCAATCTTACTACTGGTCTT
131 AGAATACACAAGTCAGGGACCGACCGAGTCCCCCC-TGCATGCAACCAATCTTACTACTGGTCTT
13155021 GC
195 GC
* * * **
13155023 TGCCGCAACCCTTGGTCCGGTCTGATCTTAGA-TTGGAATGAACTCTGTATGCTTAGACAT-AGA
1 TGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGAGA
***
13155086 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGGTTGAAGAGG
65 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGAAGAGG
* *
13155151 TAGAATACGA-AAGTCGGGGACCGACCTGA-TCCCCCCTGCATGC
130 CAGAATAC-ACAAGTCAGGGACCGACC-GAGTCCCCCCTGCATGC
13155194 TGTTGATCCA
Statistics
Matches: 146, Mismatches: 22, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
195 7 0.05
196 105 0.72
197 34 0.23
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (196 bp):
TGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAA
TGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGAAGAGGC
AGAATACACAAGTCAGGGACCGACCGAGTCCCCCCTGCATGCAACCAATCTTACTACTGGTCTTG
C
Found at i:13156319 original size:26 final size:26
Alignment explanation
Indices: 13156281--13156333 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13156271 GGCTCAAACT
13156281 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13156307 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13156333 C
1 C
13156334 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13156653 original size:26 final size:26
Alignment explanation
Indices: 13156624--13156674 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13156614 CTAGTCTGAT
* *
13156624 CTTAGATTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
13156650 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13156675 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:13156783 original size:184 final size:190
Alignment explanation
Indices: 13156466--13156976 Score: 590
Period size: 196 Copynumber: 2.7 Consensus size: 190
13156456 CTGATCATGG
* * * * *
13156466 CTTAGACATGGAATGGACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * *
13156531 CGGCCAGAGAGGCAGAATGCACTAGCTAGGGATCGGCCCGGTCCCCCCTGCGTGCTGGCGAACCT
66 CGGCCGGAGAGGCAGAATGCACAAGC-GGGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
13156596 GC-T-G-C-A-G-C-AACCCTCGATCT-AGTCTGATCTTAGATTGGGAATGAACTCTGTATA
130 GCTTGGCCTATGTCGAACCCTCGATCTGA-TCTGATCTTAGATTGGGAATGAACTCTGTATA
* *
13156650 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
13156714 CCGACCGGAGAGGTAGAATGCGCAAGTCGGGGACCGGCTCGATCCCCCTTGCATGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCACAAG-CGGGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
13156779 TGCTGTTGGTCCTATTGTCGTAACCCTCGATCTGATCTGATCTTAGATTGGGAATGAACTCTGTA
129 TGC--TTGG-CCTA-TGTCG-AACCCTCGATCTGATCTGATCTTAGATTGGGAATGAACTCTGTA
*
13156844 TG
189 TA
* * * * *
13156846 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * *
13156911 CGGCCGAAGAGGCAGAATGCACAAGCCGAGGACCTGCCCGGTCCCTCCCTACGTGCTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCACAAG-CGGGGACCGGCCCGGTCCC-CCCTGCGTGCTGTCGATCC
13156976 T
129 T
13156977 ACTATCGCAA
Statistics
Matches: 270, Mismatches: 40, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
183 1 0.00
184 108 0.40
185 1 0.00
187 1 0.00
188 1 0.00
190 1 0.00
191 1 0.00
193 1 0.00
194 1 0.00
196 135 0.50
197 19 0.07
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (190 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCACAAGCGGGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTTGGCCTATGTCGAACCCTCGATCTGATCTGATCTTAGATTGGGAATGAACTCTGTATA
Found at i:13158828 original size:159 final size:160
Alignment explanation
Indices: 13158535--13158835 Score: 426
Period size: 159 Copynumber: 1.9 Consensus size: 160
13158525 CCTTAGACAT
* * *
13158535 GGAATGAACTCTGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGGCGCTCAGCTAACCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGGCACTCAGCCAACCGAA
* * *
13158600 GAGGCAGAATGCGCAAGCCAGGGACCAGCCTGATCCCCCCATGCATGCTATCGATCCTGCTGCCG
66 GAGGCAGAATACGCAAGCCAGGGACCAGCCTGATCCCCCCATGCATGCTACCGATCCTGCTGCCA
13158665 CAACCCTCGGTCTGGTCTGATCTTACGCTA
131 CAACCCTCGGTCTGGTCTGATCTTACGCTA
* * * * * *
13158695 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-TGGGTACTGAGCCAATCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGGCACTCAGCCAACCGAA
* * * * *
13158759 GAGGCATAATACGCTAGCCAGGGATCAGCCTGATCCCCCTC-TGCGTGCTACCGGTCCTGCTGCC
66 GAGGCAGAATACGCAAGCCAGGGACCAGCCTGATCCCCC-CATGCATGCTACCGATCCTGCTGCC
13158823 ACAACCCTCGGTC
130 ACAACCCTCGGTC
13158836 CGGCTGGGGC
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
159 80 0.65
160 43 0.35
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (160 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGGCACTCAGCCAACCGAA
GAGGCAGAATACGCAAGCCAGGGACCAGCCTGATCCCCCCATGCATGCTACCGATCCTGCTGCCA
CAACCCTCGGTCTGGTCTGATCTTACGCTA
Found at i:13159036 original size:26 final size:26
Alignment explanation
Indices: 13159000--13159049 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13158990 CCAGTCTGAT
13159000 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
13159026 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13159050 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:13159920 original size:26 final size:26
Alignment explanation
Indices: 13159891--13159942 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13159881 TGGTTCGATT
*
13159891 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
13159917 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13159943 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13159966 original size:890 final size:883
Alignment explanation
Indices: 13157228--13159982 Score: 3737
Period size: 889 Copynumber: 3.1 Consensus size: 883
13157218 ACCGAACCTG
13157228 GTCGATCTTAGACTGGGAATGAACTCCATACGCTT-GACTGGGGATGAACTCCGTATGCCTAAGT
1 GTCGATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * * * *
13157292 CAACCCACAAAACAAGTGTACGGGCACTCAATCGGCCGAAGAGGCTGGCCAGAGAGGCATAATAT
66 CAACCCACAAAACGAGCGTACGGGCGCTCAGTCGGCCGAAGAGGCCGGCCAGAGAGGCATAATAT
** * *
13157357 GCAAGTCGGGGTATCAGCCCGATCCGACTCTATGTGCTACCAATCTCGCTGCCGGTCTTGCTGCC
131 GCAAGTCGGGG-ATCAGCCCGATCCCCCTCTACGTGCTACCGATCTCGCTGCCGGTCTTGCTGCC
13157422 ACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGA
195 ACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGA
* * * * * * *
13157487 AACGAGCGTGCGGGTGCTCAACTGACCTCAGTCGATCGGAGTGGTAGAATGCGCAAGCCGGGGAT
260 AACTAGCGTGCGGGTGCTCAGCCGACCTCAGTCG-CCAGAGCGGTAGAATGCGCAAGCCGAGGAT
* * *
13157552 CGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACTGCCGCAACCCTCGATCCG
324 CAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTCTG
13157617 ATCCGTTCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAG
389 ATCCGTTCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAG
* * * *
13157682 CCAACCCATGAAACGAGCGTCCA-GGCGCTCAGCCAACCGGAGAGGTAGAATGCACAAGCTGGGG
454 CCAACCCATGAAACGAGCGT-GAGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGC-AGGG
* * * *
13157746 ATCGGCTCGAT--CT-C-TTCGTGCTT-G---CTG-T--CGCAACCCTCGGTCCGGTCTGATCTT
517 ACCGACCCGATCCCTCCATGCGTGCTTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* * * *
13157800 AGGTTGGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCAA
582 AGGCTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTGAGCCAA
* * * * *
13157865 TTGGAGAGGCATAATGCGCTAGCTAAGGATCGGCCCGATCCCCCTCTGCGTGCTACTGGTCTTGC
647 TCGGAGAGGCATAATGCGCTAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTCCTGC
*
13157930 TACCACAACCCTCGGTCCGGCT-GGGCTTAGATATGGAAACTCCCTATGCCTAAGCCAACCCATG
712 TACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAACTCCCTATGCCTAAGCCAACCCATG
* ** * * * * * *
13157994 AAATGAACTTTCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGTGTAAGCCGAGGATCGGCTCGAT
777 AAACGGGCGTGCGGGTGCTCAGTCGATC-GAGAGGCAGAATGTGTAAGCCAAGGATTGGCCCGAT
* * *
13158059 CCCCCTGTGTGATATCGATCCTACTACCGCAACCCTTCGGTCCA
841 CCCCCTGTGTGATACCGATCCTACTATCGTAACCC-TCGGTCCA
* *
13158103 GTCCGATCTTTAGACAGGGAATGAACTCCATACGCTTAAACTGGGGATGAACTCCGTATGCCTAA
1 GT-CGATC-TTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* *
13158168 GTCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGGCCGAAGAGGCCGGCCAGAGAGGCATAAT
64 GTCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGGCCGAAGAGGCCGGCCAGAGAGGCATAAT
*
13158233 ATGCAAGTCGGGGATCAGCCCGATACCCCTCTACGTGCTACCGATCTCGCTGCCGGTCTTGCTGC
129 ATGCAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCTCGCTGCCGGTCTTGCTGC
13158298 CACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACG
194 CACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACG
* *
13158363 AAA-TGAGCGTGCGGGTGCTCAGCCGACCTTAGTTGGCCAGAGCGGTAGAATGCGCAAGCCGAGG
259 AAACT-AGCGTGCGGGTGCTCAGCCGACCTCAG-TCGCCAGAGCGGTAGAATGCGCAAGCCGAGG
* ** * * * *
13158427 ATCAACCCAAT-CCCTCTGCGTGCTGTTGATCCTGCTATTGGTCCTACTGCCACAACCCTCGGTC
322 ATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTC
* *
13158491 TGATCCGTTCTTAGTTTGGGAATGAACTCCATATCCTTAGACATGGAATGAAC-TCTGTATGCCT
387 TGATCCGTTCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTC-GTATGCCT
* * *
13158555 AAGCCAACCCAGGAAACGAGCGTGCAGGGCGCTCAGCTAACCGAAGAGGCAGAATGCGCAAGCCA
451 AAGCCAACCCATGAAACGAGCGTG-AGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAG-CA
* * * *
13158620 GGGACC-AGCCTGATCCCCCCATGCATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTG
514 GGGACCGA-CCCGATCCCTCCATGCGTGCT-TCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTG
* * *
13158684 ATCTTACGCTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTACTGA
577 ATCTTAGGCTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTGA
* * *
13158749 GCCAATCGGAGAGGCATAATACGCTAGCCAGGGATCAGCCTGATCCCCCTCTGCGTGCTACCGGT
642 GCCAATCGGAGAGGCATAATGCGCTAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGT
* *
13158814 CCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAACTCTCTATGCCTAAGCCAAC
707 CCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAACTCCCTATGCCTAAGCCAAC
* * * * *
13158879 CCATTAAACGGGCGTGCGGGTGCTCAGTCGATCGAAAAGACGGAATGTGTAAGCCAATGATTGGC
772 CCATGAAACGGGCGTGCGGGTGCTCAGTCGATCG-AGAGGCAGAATGTGTAAGCCAAGGATTGGC
* * * *
13158944 CCGATCCCCCCTGTGTGCTACTGATCCTACTATCGTAACCCTTGATCCA
836 CCGAT-CCCCCTGTGTGATACCGATCCTACTATCGTAACCCTCGGTCCA
*
13158993 GTCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
1 GTC-GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * * *
13159058 TCAACCCATAAAACGAGCGTACGGGCGTTCAGTCGGCTGAAGAGGCCAGCCAGAGAGGCAGAATA
65 TCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGGCCGAAGAGGCCGGCCAGAGAGGCATAATA
** * * ** *
13159123 TGCAAGTCGGGGATCAGGTCGGTCCCCCTCTACATGCTGTCGATCTCGCTGCCAGTCTTGCTGCC
130 TGCAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCTCGCTGCCGGTCTTGCTGCC
* * *
13159188 ACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATAAACTCTGTATGCCTAAGCAAACCCACGA
195 ACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGA
* ** * *
13159253 AACTAGCGTGCGGGCGCTCAGCCGACCTCAGTCAGCCTTAGCGATAGAATACGCAAGCCGAGGAT
260 AACTAGCGTGCGGGTGCTCAGCCGACCTCAGTC-GCCAGAGCGGTAGAATGCGCAAGCCGAGGAT
* * * *
13159318 CAGCCTGGTCCCCCCTTACGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCT
324 CAGCCCGGTCCCCCC-TGCGTGCTGTCGATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTCT
**
13159383 GATCCAATCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAA
388 GATCCGTTCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAA
* * * ** * *
13159448 GCCAACCCATGAAATGAGCGTGTGGGCACTCAGCCAGTCGGAGAGGCAAAATACGCAAGTCAGGG
453 GCCAACCCATGAAACGAGCGTGAGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAG-CAGGG
* * *
13159513 ACCGACCCAATCCCTCCATGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCAGATCT
517 ACCGACCCGATCCCTCCATGCGTGCT-TCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * *
13159578 TAGGCTAGGAATGAACTTCGTATGCATAAGGCAACCCATGAAATGAGCGTGTGGGCACTGAGCCG
581 TAGGCTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTGAGCCA
* * * * *
13159643 ATCAGAGAGGCATAATGCGCTAGCCAGGGATTGGCCCGATCCCTTCTTTGTGTGCTACCGGTCCT
646 ATCGGAGAGGCATAATGCGCTAGCCAGGGATCGGCCCGATCCC-CCTCTGCGTGCTACCGGTCCT
* * * *
13159708 GCTACCACAACCCTCGATCTGACTGGGGCTTAGACATGGAAACTCCCTATGCCTAAGACAACCCA
710 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAACTCCCTATGCCTAAGCCAACCCA
** * * *
13159773 TGAAACGGGCGTGCGGGCACTCAGTCGATCAGAGAGGCAGAATGCGTAAGCTAAGGATTGACCCG
775 TGAAACGGGCGTGCGGGTGCTCAGTCGATC-GAGAGGCAGAATGTGTAAGCCAAGGATTGGCCCG
* * * * **
13159838 GTCCCCCTGCGTGTTACCGATCCTCCTATCGTAACCCTCGGTCTG
839 ATCCCCCTGTGTGATACCGATCCTACTATCGTAACCCTCGGTCCA
* ** *
13159883 GTTCGATTTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
1 G-TCGATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * **
13159948 TCAACACACGAAACGAGCGTGTGGGCGCTCAGTCG
65 TCAACCCACAAAACGAGCGTACGGGCGCTCAGTCG
13159983 ACCAGAGAGG
Statistics
Matches: 1645, Mismatches: 200, Indels: 55
0.87 0.11 0.03
Matches are distributed among these distances:
875 4 0.00
876 134 0.08
877 237 0.14
878 100 0.06
879 1 0.00
880 1 0.00
881 6 0.00
882 1 0.00
883 1 0.00
886 3 0.00
887 1 0.00
888 1 0.00
889 453 0.28
890 414 0.25
891 285 0.17
892 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (883 bp):
GTCGATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
CAACCCACAAAACGAGCGTACGGGCGCTCAGTCGGCCGAAGAGGCCGGCCAGAGAGGCATAATAT
GCAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCTCGCTGCCGGTCTTGCTGCCA
CAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAA
ACTAGCGTGCGGGTGCTCAGCCGACCTCAGTCGCCAGAGCGGTAGAATGCGCAAGCCGAGGATCA
GCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTCTGAT
CCGTTCTTAGTCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCC
AACCCATGAAACGAGCGTGAGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCAGGGACCG
ACCCGATCCCTCCATGCGTGCTTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGGC
TAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTGAGCCAATCGG
AGAGGCATAATGCGCTAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTCCTGCTACC
ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAACTCCCTATGCCTAAGCCAACCCATGAAAC
GGGCGTGCGGGTGCTCAGTCGATCGAGAGGCAGAATGTGTAAGCCAAGGATTGGCCCGATCCCCC
TGTGTGATACCGATCCTACTATCGTAACCCTCGGTCCA
Found at i:13161050 original size:159 final size:158
Alignment explanation
Indices: 13160639--13161055 Score: 462
Period size: 159 Copynumber: 2.6 Consensus size: 158
13160629 ACTCCGTATG
* * **
13160639 CTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCTCGAAATGAGTTTGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
* ** * ** * *
13160704 CGGCCGAAGAGAAAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCTCTACGTGCTGTCGATCCT
66 CGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCTCTACGTGCTATCGATCCC
13160769 ACTACCACAACCCTCGATCTGGTCTGAT
131 ACTACCACAACCCTCGATCTGGTCTGAT
* * * * * *
13160797 CTTAGAC-TGTGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
* * * ** *
13160861 CCGATCGAAGAGGCATAATGCGA-AAACCAGGGATCGACCCGGTCCCCCTCTGTGTGCTATCGGT
65 CCGGTCGAAGAGGCAGAATGC-ACAAGCCAGGGATCGACCCGGT-CCCCTCTACGTGCTATCGAT
* * * *
13160925 CCCACTGCCACAACCCTCGGTTTGG-CTGGGT
128 CCCACTACCACAACCCTCGATCTGGTCT-GAT
* * * * *
13160956 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGAGAGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
* *
13161021 CGGTCGGAGAGGCAGAATGTACAAGCCAGGGATCG
66 CGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCG
13161056 GGGATGAACT
Statistics
Matches: 209, Mismatches: 44, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 87 0.42
159 118 0.56
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
CGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCTCTACGTGCTATCGATCCC
ACTACCACAACCCTCGATCTGGTCTGAT
Found at i:13161795 original size:26 final size:25
Alignment explanation
Indices: 13161756--13161807 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13161746 GGCTCAAACT
13161756 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
13161781 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
13161807 C
1 C
13161808 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:13162412 original size:343 final size:342
Alignment explanation
Indices: 13161755--13162556 Score: 810
Period size: 343 Copynumber: 2.3 Consensus size: 342
13161745 TGGCTCAAAC
*
13161755 TCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAACC
1 TCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCAAAGCCAAACC
* * * *
13161820 ACAAAATGAGCGTGCGGGCACTCAATCGGTCGGAGAGGTAGAATGCTCAAGCCAGGGATCGATCC
66 ACAAAATGAGCGTGCGAGCACTCAATCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCC
13161885 GATCCCACTCTGCGTGCTACCGATCCCGCTACCACAACCCTCAGTCCGGCTGGGGATTAGACATG
131 GATCCCACTCTGCGTGCTACCGATCCCGCTACCACAACCCTCAGTCCGGCTGGGGATTAGACATG
*
13161950 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCCGGAGA
196 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGA
* * * * * **
13162015 GGCAGAATACACAAGTCGGGGATCAACCTGATCCCCCCTGCGTGTTGTCGATCCTGCTGCCACAA
261 GGCAGAATACACAAGCCAGGGACCAACCTGATCCCCCCTGCATGCTACCGATCCTGCTGCCACAA
13162080 CCCTCGGTCTGATCCGA
326 CCCTCGGTCTGATCCGA
* * * * ** *
13162097 TCTTAGATTGAGAATGAACTCCGTATGGTTAGAC-TAGGGATTAACTCTGTATGCCAAAGTTAAC
1 TCTTAGACTG-GAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCTGTATGCCAAAGCCAAA
* * * * * * *
13162161 CCACGAAATGAGCGTTCGAG-AGCTGAGTCGG-CATGAGAGGCATAATGCGCAAGCC-GAGGATT
64 CCACAAAATGAGCGTGCGAGCA-CTCAATCGGTC-GGAGAGGCAGAATGCGCAAGCCAG-GGATC
* * * * ** * *
13162223 GGCCCGGTCCCCCTCTGTGTGCTGTCGATCCCGCTGCCACAACCCTC-GATCCGGCTGGGGCTTA
126 GACCCGATCCCACTCTGCGTGCTACCGATCCCGCTACCACAACCCTCAG-TCCGGCTGGGGATTA
* ** * *
13162287 GACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGCGCTCAGCTGGC
190 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGC
* *** * *
13162352 CAGAGAGGCAGAATACGCAAGCCAGGGACC-GGTTCGGTCCCCCGTGCATGCTACCGATCCTACT
255 CAGAGAGGCAGAATACACAAGCCAGGGACCAACCT-GATCCCCCCTGCATGCTACCGAT-C--CT
* * * * *
13162416 TCTGGTCCCGCTACCGTAACCCTCAGTCCGGTCTGA
316 GCT-G---C-C-A-C--AACCCTCGGTCTGATCCGA
** ** *
13162452 TCTTAGACTGGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCC-AAC
1 TCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCAAAGCCAAAC
* * * *
13162516 CA-ATGAAATGAGCGTGTGGGTACTCAACCGGTCGGAGAGGC
65 CACA--AAATGAGCGTGCGAGCACTCAATCGGTCGGAGAGGC
13162557 CGGTCGAAGA
Statistics
Matches: 364, Mismatches: 71, Indels: 37
0.77 0.15 0.08
Matches are distributed among these distances:
342 15 0.04
343 245 0.67
344 1 0.00
346 4 0.01
347 1 0.00
350 1 0.00
351 1 0.00
352 1 0.00
353 1 0.00
354 4 0.01
355 86 0.24
356 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (342 bp):
TCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCAAAGCCAAACC
ACAAAATGAGCGTGCGAGCACTCAATCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCC
GATCCCACTCTGCGTGCTACCGATCCCGCTACCACAACCCTCAGTCCGGCTGGGGATTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGA
GGCAGAATACACAAGCCAGGGACCAACCTGATCCCCCCTGCATGCTACCGATCCTGCTGCCACAA
CCCTCGGTCTGATCCGA
Found at i:13162504 original size:26 final size:26
Alignment explanation
Indices: 13162453--13162505 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13162443 CCGGTCTGAT
***
13162453 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13162479 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13162505 C
1 C
13162506 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13162701 original size:26 final size:26
Alignment explanation
Indices: 13162663--13162714 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13162653 CCGATCCGAT
13162663 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
13162689 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
13162715 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:13163201 original size:26 final size:26
Alignment explanation
Indices: 13163165--13163217 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13163155 TCAGTCTGAT
*
13163165 CTTAGATTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
13163191 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13163217 C
1 C
13163218 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13164071 original size:26 final size:26
Alignment explanation
Indices: 13164030--13164082 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13164020 CCAATCCGAT
13164030 CTTAGACTAGGAATGAACTAC-GTATG
1 CTTAGACTAGGAATGAACT-CTGTATG
13164056 CTTAGACT-GGAGATGAACTCTGTATG
1 CTTAGACTAGGA-ATGAACTCTGTATG
13164082 C
1 C
13164083 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:13164924 original size:26 final size:26
Alignment explanation
Indices: 13164895--13164947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13164885 TCGGTCTGAT
*
13164895 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
13164921 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13164947 C
1 C
13164948 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13165631 original size:26 final size:26
Alignment explanation
Indices: 13165593--13165645 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13165583 GGCTCAAACT
13165593 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13165619 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13165645 C
1 C
13165646 GTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13165965 original size:26 final size:26
Alignment explanation
Indices: 13165936--13165990 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
13165926 CTGGTCTGAT
*
13165936 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
13165962 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13165988 CTT
1 CTT
13165991 TAGTCAACCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13167083 original size:26 final size:26
Alignment explanation
Indices: 13167047--13167099 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13167037 TCGGTTTGAT
13167047 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13167073 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13167099 C
1 C
13167100 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13167749 original size:26 final size:26
Alignment explanation
Indices: 13167720--13167770 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13167710 CGGTTTGATC
*
13167720 TTAGACTTGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
13167746 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13167771 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:13167822 original size:672 final size:672
Alignment explanation
Indices: 13166357--13167823 Score: 1674
Period size: 672 Copynumber: 2.2 Consensus size: 672
13166347 GGTCTGGTAC
* *
13166357 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGAATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* ** * * *
13166422 CTCACAAAATGAGCGTGCGAAGTGCTCAACCGACTGGAGAGGCTAGCCGAAGAGGCATAATGCAC
66 CCCATGAAACGAGCGTGCGGA-CGCTCAA-C--C----GA--CTA---G-AGAGGCATAATGCAC
* * * * * * *
13166487 AAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGTTGTCAATCCTACTGCCACA
117 AAGCCGAGGATCAGCCCGATCCACCTCTACATACTATCGATCCCGCTATCAATCCTACTACCACA
* *
13166552 ACCCTCAGTTCGGCTGCGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAAC
182 ACCCTCAGTCCGGCTGCGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
* * * ** * *
13166617 GAGCATGCGGGCGCTCAGCGTACTGGAGAGGCTGAATGTGCAAGCTGGGGATCAGCTCGATCCTC
247 GAGCATGCGGGCGCTCACCGTACCGGAGAGGCAGAATGCACAAGCTAGGGATCAGCCCGATCCT-
**
13166682 CCCCTGCATGCTGTCGATACTGCTATTACAACACTCGGTCCAGTCCGATCTTAGACTGGGAACGA
311 CCCCTGCATGCTGTCGATACTGCTACCACAACACTCGGTCCAGTCCGATCTTAGACTGGGAACGA
* * **
13166747 ACTTCGTATGTCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGCCAGCCGGAGAGGCCTA
376 ACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGCACTGAGCCAGCCGGAGAGGCCTA
* * * * *
13166812 ATGCATAAGTCGGGGATCGGCTCAATCCCCCTCTACGTGCTACCGGTCCCGCTACCATAACCTCG
441 ATGCACAAGTCGGGGATCGGCCCAATCCCCCTCTACGTACTACCAGTCCCGCTACCACAACCTCG
* * *
13166877 GTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTG
506 GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAGGCGTG
* * * * * * *
13166942 CGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGTCGAGGATTGACCCCGTCCCCCCTGCGT
571 CGGGCGCTCAACCGGCCAGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCCGTCCCCACTACGT
* *
13167007 GCTATCGATCCTGCTGTCGCAACCCTCAGTTCGGTTT
636 GCTATCGATCCTGCTGTCACAACCCTCAGTCCGGTTT
*
13167044 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * ** * * *
13167109 CCCATGAAACGAGCGTGCGGGCACTCAGTCGGCTGGAGAGGCATAATGCGCAAGCCGAGGATCAG
66 CCCATGAAACGAGCGTGCGGACGCTCAACCGACTAGAGAGGCATAATGCACAAGCCGAGGATCAG
* * * *** * * * *
13167174 CTCGGTCCACCTCTACATACTATCGATCCTGCTATTGGTCCTGCTACCATAACCCTCGGTCCTGC
131 CCCGATCCACCTCTACATACTATCGATCCCGCTATCAATCCTACTACCACAACCCTCAGTCCGGC
* * *
13167239 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGC
196 TGCGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGC
* * *
13167304 TCAACCG-ACCGGAGAGGCAGAATGCACAAG-TCAGGGAT-TGACCCGGTCCT-CCCTGCGTGCT
261 TC-ACCGTACCGGAGAGGCAGAATGCACAAGCT-AGGGATCAG-CCCGATCCTCCCCTGCATGCT
* ** ** *
13167365 GTCGAT-CTTGCTACCGCAACACTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
323 GTCGATAC-TGCTACCACAACACTCGGTCCAGTCCGATCTTAGACTGGGAACGAACTCCGTATGC
** * *
13167429 CTAAGTCAACCCACAAAATGAGCGTTCGGGCGTTGAGCC-GACTGGAGAGGCGTAATGCACAAG-
387 CTAAGTCAACCCACAAAATGAGCGTTCGGGCACTGAGCCAG-CCGGAGAGGCCTAATGCACAAGT
* * * * * * *
13167492 CGAGGGATCGGCCCGATCTCTCTTTACGTACTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCT
451 CG-GGGATCGGCCCAATCCCCCTCTACGTACTACCAGTCCCGCTACCACAA-CCTCGGTCCGACT
* *** * * * * *
13167557 GGGGCTTAGACATGGAATGAGCTTTGTATGCCTAAACGAACCCACGAAACGGGTGTGTGGGTGCT
514 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAGGCGTGCGGGCGCT
* * * * ** * *
13167622 TAACTGGCC-GAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGGTTCCCACTACGTGCT-GCT
579 CAACCGGCCAG-AGAGGCAAAATGCGCAAGCCGAGGATCGACCCCGTCCCCACTACGTGCTATC-
* *
13167685 GATCTTGCTGTCACAACCCTCGGTCCGGTTT
642 GATCCTGCTGTCACAACCCTCAGTCCGGTTT
* *
13167716 GATCTTAGACTTGGAATGAACTCCGTATGGTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
13167781 CCCATGAAACGAGCGTGCGGACGCTCAACCGACTAGAGAGGCA
66 CCCATGAAACGAGCGTGCGGACGCTCAACCGACTAGAGAGGCA
13167824 GGATGCCCAA
Statistics
Matches: 655, Mismatches: 116, Indels: 33
0.81 0.14 0.04
Matches are distributed among these distances:
670 4 0.01
671 156 0.24
672 237 0.36
673 169 0.26
674 4 0.01
677 2 0.00
679 1 0.00
683 1 0.00
686 4 0.01
687 77 0.12
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (672 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGACGCTCAACCGACTAGAGAGGCATAATGCACAAGCCGAGGATCAG
CCCGATCCACCTCTACATACTATCGATCCCGCTATCAATCCTACTACCACAACCCTCAGTCCGGC
TGCGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGC
TCACCGTACCGGAGAGGCAGAATGCACAAGCTAGGGATCAGCCCGATCCTCCCCTGCATGCTGTC
GATACTGCTACCACAACACTCGGTCCAGTCCGATCTTAGACTGGGAACGAACTCCGTATGCCTAA
GTCAACCCACAAAATGAGCGTTCGGGCACTGAGCCAGCCGGAGAGGCCTAATGCACAAGTCGGGG
ATCGGCCCAATCCCCCTCTACGTACTACCAGTCCCGCTACCACAACCTCGGTCCGACTGGGGCTT
AGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAGGCGTGCGGGCGCTCAACCGG
CCAGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCCGTCCCCACTACGTGCTATCGATCCTGCT
GTCACAACCCTCAGTCCGGTTT
Found at i:13168654 original size:26 final size:26
Alignment explanation
Indices: 13168625--13168677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13168615 CCGGTCTGAT
13168625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13168651 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13168677 C
1 C
13168678 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13168781 original size:181 final size:181
Alignment explanation
Indices: 13168446--13168781 Score: 500
Period size: 181 Copynumber: 1.9 Consensus size: 181
13168436 CTCAAAATCC
13168446 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * *
13168511 GAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAG
66 GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAG
* *
13168576 TCCCCTGCGTGCGTCGATCCTGCTGCCACAACGTGCAGTCCGGTCTGATCT
131 TCCCCTACGTGCATCGATCCTGCTGCCACAACGTGCAGTCCGGTCTGATCT
* *
13168627 TAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCA
1 TAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * *
13168691 TGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCATAATGCGCAAG-C-GGGATCAGCCGA
65 TGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCA
13168754 -TCCCTCTACGTGCTATCGATCCCTGCTG
130 GTCCC-CTACGTGC-ATCGAT-CCTGCTG
13168782 TCTGCTACCA
Statistics
Matches: 139, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
178 4 0.03
179 17 0.12
180 7 0.05
181 111 0.80
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.19
Consensus pattern (181 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAG
TCCCCTACGTGCATCGATCCTGCTGCCACAACGTGCAGTCCGGTCTGATCT
Found at i:13169074 original size:156 final size:158
Alignment explanation
Indices: 13168650--13169186 Score: 538
Period size: 154 Copynumber: 3.4 Consensus size: 158
13168640 AACTCCGTAT
* *
13168650 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* *
13168715 CCGGCC-AGAGAGGCATAATGCGCAAGCGGGATCAG-CCGATCCCTCTACGTGCTATCGATCCCT
66 CCGGCCGAG-GAGGCATAATGCGCAAGCGGGATCGGCCCGATCCCCCTACGTGC-ATC-AT--CT
* * *
13168778 GCTGTCTGCTACCACAACCCTCGGTCCGGTCGG
126 GATGCCTGCTACCACAACCCTCGGTCCGGTCGA
* * *
13168811 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA-CCA-CAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * *
13168873 GCCGGCGGA-GAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTACGTG-AT-AT-TGA
65 GCCGGCCGAGGAGGCATAATGCGCAAG-CG-GGATCGGCCCGATCCCCCTACGTGCATCATCTGA
**
13168934 T-CCTGCTACCGTAACCCTCGGTCCGGTCTGA
128 TGCCTGCTACCACAACCCTCGGTCCGGTC-GA
* * * *
13168965 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * **
13169030 CCGACCGAGGAGGCATAATGCGCAAGTCGGGATCGGCCCGAT-CCCCT-C-TGCGT-A-CTGCGG
66 CCGGCCGAGGAGGCATAATGCGCAAG-CGGGATCGGCCCGATCCCCCTACGTGCATCATCTGATG
* * * * *
13169090 TCC--CTGCCACAACCCTCGATCCGACTGGG
130 -CCTGCTACCACAACCCTCGGTCCG-GTCGA
* * *
13169119 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-GG-GCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
13169181 GCCGGC
65 GCCGGC
13169187 GAGAGGTAGA
Statistics
Matches: 315, Mismatches: 45, Indels: 41
0.79 0.11 0.10
Matches are distributed among these distances:
152 9 0.03
153 29 0.09
154 105 0.33
155 10 0.03
156 39 0.12
157 20 0.06
158 16 0.05
159 29 0.09
160 9 0.03
161 48 0.15
162 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGGCCGAGGAGGCATAATGCGCAAGCGGGATCGGCCCGATCCCCCTACGTGCATCATCTGATGC
CTGCTACCACAACCCTCGGTCCGGTCGA
Found at i:13174264 original size:26 final size:26
Alignment explanation
Indices: 13174233--13174288 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13174223 TGGGTTGACT
*
13174233 TAAGCACACGGAGTTCA-TCCTCAGTC
1 TAAGCACACAGAGTTCATTCCT-AGTC
*
13174259 TAAGCATACAGAGTTCATTCCTAGTC
1 TAAGCACACAGAGTTCATTCCTAGTC
13174285 TAAG
1 TAAG
13174289 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCACACAGAGTTCATTCCTAGTC
Found at i:13174563 original size:159 final size:158
Alignment explanation
Indices: 13174330--13174798 Score: 511
Period size: 158 Copynumber: 3.0 Consensus size: 158
13174320 ATTAGCAGCA
* * *
13174330 CACAG-GGGGGACGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCCCGC
1 CACAGAGGGGGACGGGCCGATCCTCGACTTGCTCATTCTACCTCTTCGGCCGGCTGAGCGCCCGC
* *
13174394 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATC
66 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATC
* *
13174459 AAGGGTTGTGGTAGCGGGACCGGAAGTA-
131 GAGGGTTGTGGTAGCAGGACCGGAA-TAT
* * * * * ** *
13174487 CGCAGAGGGGGATCGAGCCGATCCTCGACTTGCTCATTATGCCTCTTCGGTCGGCACAGCACCCG
1 CACAGAGGGGGA-CGGGCCGATCCTCGACTTGCTCATTCTACCTCTTCGGCCGGCTGAGCGCCCG
* * * * **
13174552 TACGCTTGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGG
65 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGG
* ** *
13174615 ATTGAGGGTTACGGTAGCAGGATC--AATAT
128 ATCGAGGGTTGTGGTAGCAGGACCGGAATAT
* * * * *
13174644 CACATAGGGAGGACTGGGTCGATCCTCGGCTTG-TGCATTCTACCTCTCCGGCCGACTGAGCGCC
1 CACAGAGGG-GGAC-GGGCCGATCCTCGACTTGCT-CATTCTACCTCTTCGGCCGGCTGAGCGCC
** *
13174708 CGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
63 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* *
13174773 ACCGAGGGTTGTGGTAGTAGGACCGG
128 ATCGAGGGTTGTGGTAGCAGGACCGG
13174799 CAGTGGGATC
Statistics
Matches: 247, Mismatches: 53, Indels: 21
0.77 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 18 0.07
158 114 0.46
159 110 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CACAGAGGGGGACGGGCCGATCCTCGACTTGCTCATTCTACCTCTTCGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATC
GAGGGTTGTGGTAGCAGGACCGGAATAT
Found at i:13174746 original size:158 final size:156
Alignment explanation
Indices: 13174262--13174762 Score: 492
Period size: 159 Copynumber: 3.2 Consensus size: 156
13174252 CTCAGTCTAA
* * * * * **
13174262 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGTAGGATTAGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGATTGAGGGTTGCGGTAGCAGGATCAAT
* * *
13174326 AGCACACAGGGGGGAC-GGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGACCGGCTGAGCGC
65 A-CACACA-GGGGGACTGGGCCGATCCTCGACTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGC
*
13174390 CCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** ** * * *
13174419 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCAAGGGTTGTGGTAGCGGGACCGGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGATTGAGGGTTGCGGTAGCAGGATC--A
* * * * * * **
13174483 AGTACGCAGAGGGGGA-TCGAGCCGATCCTCGACTTGCT-CATTATGCCTCTTCGGTCGGCACAG
63 A-TACACACAGGGGGACT-GGGCCGATCCTCGACTTG-TGCATTCTACCTCTTCGGCCGGCTGAG
* * * * *
13174546 CACCCGTACGCTTGTTTCATGGGTTGACTTAT
125 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
13174578 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGATTGAGGGTTACGGTAGCAGGATCAAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATTGAGGGTTGCGGTAGCAGGATCAAT
* * * * *
13174642 ATCACATAGGGAGGACTGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGGCCGACTGAGCGC
65 A-CACACAGGG-GGACTGGGCCGATCCTCGACTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGC
**
13174707 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
13174736 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13174763 CCCCAGCCGG
Statistics
Matches: 269, Mismatches: 60, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 55 0.20
158 97 0.36
159 111 0.41
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGATTGAGGGTTGCGGTAGCAGGATCAATA
CACACAGGGGGACTGGGCCGATCCTCGACTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13174952 original size:26 final size:26
Alignment explanation
Indices: 13174922--13174972 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13174912 TGACTTAGGT
13174922 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
13174948 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
13174973 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:13175245 original size:11 final size:11
Alignment explanation
Indices: 13175226--13175258 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13175216 CCTGGGGCAC
13175226 CATCGTCGGAG
1 CATCGTCGGAG
*
13175237 CATCATCGGAG
1 CATCGTCGGAG
13175248 CATCGTCGGAG
1 CATCGTCGGAG
13175259 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13175869 original size:26 final size:26
Alignment explanation
Indices: 13175839--13175889 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13175829 TTGACTTAGG
*
13175839 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCAAGTCTAAC
*
13175865 CATACGGAGTTCATTCCAAGTCTAA
1 CATACGGAGTTCATCCCAAGTCTAA
13175890 GATCGAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCAAGTCTAAC
Found at i:13176332 original size:158 final size:157
Alignment explanation
Indices: 13175865--13176365 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 157
13175855 CCAGTCTAAC
* * * *
13175865 CATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACTGAGGGTTGCGACAGCAGGATC-AGCA
1 CATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGA-CA
* * * * *
13175929 ACACGTAGTGG-GGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCAC
65 GCACGCAG-GGAGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCAC
* * *
13175993 CCACACACCCGTTTCGTGGGTTTGCTTAGG
129 CCGCACGCTCGTTTCGTGGG-TTGCTTAGG
* * ** * ** * * * *
13176023 CATACAGAGCTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGCGGGA-CTGGCA
1 CATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATC-GACA
* * * * * * *
13176087 GCACGCAAAGGGA-GATCAGGCCGATCCCCCG-CTTGTGCATTAC-GCCTCTCCGGTTGGCTCAA
65 GCACGC--AGGGAGGACCGGGTCGAT-CCCCGACTTGTGCATT-CTGCCTCTCCGGTCGGTTGAG
* * *
13176149 CGCCCGAACGCTCGTTTTGTGGGTTGACTTAGG
126 CACCCGCACGCTCGTTTCGTGGGTTG-CTTAGG
* * * *
13176182 CATACGGAGTTCATTCC-TAGTCTAAGATCAAACCAAACTGAGTGTTGCGGTAGCAAGATCGACA
1 CATACGGAGTTCATTCCAT-GTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
* * *
13176246 GCACGCAGGGAGGACCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTTCGATCGGTTGAGCACC
65 GCACGCAGGGAGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCACC
13176311 CGCACGCTCGTTTCGTGGGTTGGCTTAGG
130 CGCACGCTCGTTTCGTGGGTT-GCTTAGG
13176340 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
13176366 CCCCAGTCGG
Statistics
Matches: 268, Mismatches: 60, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
157 11 0.04
158 139 0.52
159 109 0.41
160 9 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGAGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCACCC
GCACGCTCGTTTCGTGGGTTGCTTAGG
Found at i:13176540 original size:26 final size:26
Alignment explanation
Indices: 13176510--13176562 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13176500 GTTGACTTAG
13176510 GCATAC-GTAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
13176536 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13176562 G
1 G
13176563 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13177234 original size:26 final size:26
Alignment explanation
Indices: 13177198--13177250 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13177188 GTTGACTTAG
*
13177198 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13177224 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13177250 G
1 G
13177251 ATCGTACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13177990 original size:26 final size:26
Alignment explanation
Indices: 13177940--13177992 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13177930 GTTGGCTTAC
* *
13177940 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13177966 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13177992 G
1 G
13177993 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13178676 original size:26 final size:26
Alignment explanation
Indices: 13178639--13178691 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13178629 GTTGACTTAG
*
13178639 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13178665 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13178691 G
1 G
13178692 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13181820 original size:163 final size:152
Alignment explanation
Indices: 13181362--13181858 Score: 416
Period size: 163 Copynumber: 3.1 Consensus size: 152
13181352 AAGCATTCAT
* * * * *
13181362 AGTTCATTCCCA-GTCTAAGATCAGACCGGACCGATGGTTGCGACAGCAGGATCGACAACACGTA
1 AGTTCATT-CCATGTCTAAGATCAGA-TGGACCGAGGGTTGCG-CAGTAGGATCGACAGCACG-C
* * *
13181426 AGGGGGATCGGGCCGATCCCCGA-TTTACGCATTCTGCCACCCCGACCGACTGAGCGCCCGCACA
62 AGGGGGATC-GG-CGATCCCCGACTTT--GCATTCTGCCTCTCCGACCG-CTGAGCGCCCGCACG
* * *
13181490 CCCATTTCGTGGGTT-AGCTGAGGCATAGGG
122 CTCATTTCGTGGGTTGAGCTTAGGCATACGG
** * * *
13181520 AGTTCA-TCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTATG-GCAGTGGGACCGACAGCACGC
1 AGTTCATTCCATGTCTAAG-ATCAGAT-GGACCGAGGG-T-TGCGCAGTAGGATCGACAGCACGC
* * * * * **
13181582 AGAGGGGGATCGGCTGATCCCTGACTTTCGTATTATGCCTTTCCGACCGGCTCAGCGCCTACACG
62 --AGGGGGATCGGC-GATCCCCGACTTT-GCATTCTGCCTCTCCGACC-GCTGAGCGCCCGCACG
*
13181647 TTCATTTCGTGGGTTGACTTGACTTAGGCATACGG
122 CTCATTTCGTGGGTTGA---G-CTTAGGCATACGG
*
13181682 AGTTCATTCTCA-GTCTAAGATCAGAATGGACCGAGGGTTGCAGCAGTAGGATCAACAGCACGCA
1 AGTTCATTC-CATGTCTAAGATCAG-ATGGACCGAGGGTTGC-GCAGTAGGATCGACAGCACGCA
*
13181746 GGGGAGATCAGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCTGCTGAGCGCCCGCACGC
63 GGGG-GATC-GG-CGATCCCCGACTT-TGCATTCTGCCTCTCCGACC-GCTGAGCGCCCGCACGC
* *
13181811 TCGTTTCGTGGGTTG-GCATAGGCATACGG
123 TCATTTCGTGGGTTGAGCTTAGGCATACGG
13181840 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
13181859 CATATGGAGT
Statistics
Matches: 271, Mismatches: 42, Indels: 52
0.74 0.12 0.14
Matches are distributed among these distances:
156 4 0.01
157 82 0.30
158 53 0.20
159 3 0.01
161 8 0.03
162 25 0.09
163 91 0.34
164 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (152 bp):
AGTTCATTCCATGTCTAAGATCAGATGGACCGAGGGTTGCGCAGTAGGATCGACAGCACGCAGGG
GGATCGGCGATCCCCGACTTTGCATTCTGCCTCTCCGACCGCTGAGCGCCCGCACGCTCATTTCG
TGGGTTGAGCTTAGGCATACGG
Found at i:13181868 original size:26 final size:26
Alignment explanation
Indices: 13181832--13181884 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13181822 GTTGGCATAG
13181832 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
13181858 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13181884 G
1 G
13181885 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13182217 original size:26 final size:26
Alignment explanation
Indices: 13182181--13182233 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13182171 GTTGACTTAG
13182181 GCATACAGAGTTCA-TCCGCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
13182207 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13182233 G
1 G
13182234 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13182527 original size:159 final size:158
Alignment explanation
Indices: 13182347--13183024 Score: 591
Period size: 159 Copynumber: 4.3 Consensus size: 158
13182337 TGCACGTCCG
* *
13182347 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT-TGAAGCCCCAATCGGACCGAGGGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT-AAGCCCCAATCGGACCGAGGGT
* ** * *
13182411 TGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACCTAGCCGATCCCCAGCTTGCGCACTATGCC
65 TGTGGTAGCGGGATCGGTAGCAC-CAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCC
* * * * *
13182476 TCTGCAGCTGGCTCAGGGCCCGAACACTCA
129 TCTCCGGCTGGCTCAGCGCCCGCACGCTCA
* * * ** ** * *
13182506 TTTCGTGGGTTGACTTAGGCATACGGAGCTCACTCCCA-GTCTATGATCGGACCGGATCGAGGGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAATCGGACCGAGGGT
* ** * * * * * ** *
13182570 TGCGGTAGCAAGATCGATAGCA-CATTGGGGGGGATCGGGCTGATCCCTGGCTTATGCATTCTGC
65 TGTGGTAGCGGGATCGGTAGCACCA--GAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGC
* * * *
13182634 CTCTCCGGCTTGCTGAGCGCCTGCACGCTCG
128 CTCTCCGGCTGGCTCAGCGCCCGCACGCTCA
* * * * *
13182665 TTTCGTGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTT
* * * *
13182730 GTGGTAGCGGGATCGGTAGCA-CATATGGGGGACAGGGCCGATCCCCGGCCTGCGCATTATTCCT
66 GTGGTAGCGGGATCGGTAGCACCAGA-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCT
* * *
13182794 CTTCGGCCGGCTCAGTGCCCGCACGCTCA
130 CTCCGGCTGGCTCAGCGCCCGCACGCTCA
* * *** *
13182823 TTTCGTGGGTTGACTTACGCATACAGAGTTCATTCCCA-GTC-AA-AATCAGACCGGACCGAGGG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGGACCGAGGG
* ** * ** * *
13182885 TTGCGGTAGCAAGATTGACAGCACC-CAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCC
64 TTGTGGTAGCGGGATCGGTAGCACCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCC
* **
13182949 TCTCCGG-TCGGCTGAGCGCCCGCACAATCA
129 TCTCCGGCT-GGCTCAGCGCCCGCACGCTCA
* * * *
13182979 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTGCATGTCTAAGC
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13183025 ATATGGAGTT
Statistics
Matches: 401, Mismatches: 105, Indels: 27
0.75 0.20 0.05
Matches are distributed among these distances:
155 2 0.00
156 92 0.23
157 34 0.08
158 88 0.22
159 180 0.45
160 5 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTT
GTGGTAGCGGGATCGGTAGCACCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTC
TCCGGCTGGCTCAGCGCCCGCACGCTCA
Found at i:13183020 original size:314 final size:316
Alignment explanation
Indices: 13182347--13183024 Score: 871
Period size: 314 Copynumber: 2.1 Consensus size: 316
13182337 TGCACGTCCG
13182347 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT-TGAAGCCCCAATCGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT-AAGCCCCAATCGGACCGAGGGT
** *
13182411 TGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACCTAGCCGATCCCCAGCTTGCGCACTATGCC
65 TGTGGCAGCGGGATCGGTAGCAC-CAGAGGGGGACAGAGCCGATCCCCAGCCTGCGCACTATGCC
* * *
13182476 TCTGCAGCTGGCTCAGGGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCACTC
129 TCTGCAGCCGGCTCAGGGCCCGAACACTCATTTCGTGGGTTGACTTACGCATACAGAGCTCACTC
** * * * *** *
13182541 CCAGTCTATGATCGGACCGGATCGAGGGTTGCGGTAGCAAGATCGATAGCACATTGGGGGGGATC
194 CCAGTCTAAAATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGACAGCACA-CCAGGGGGACC
* * * * * ** *
13182606 GGGCTGATCCCTGGCTTATGCATTCTGCCTCTCCGGCTTGCTGAGCGCCTGCACGCTCG
258 GGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACAATCA
* * *
13182665 TTTCGTGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTT
* * * * * *
13182730 GTGGTAGCGGGATCGGTAGCA-CATATGGGGGACAGGGCCGATCCCCGGCCTGCGCATTATTCCT
66 GTGGCAGCGGGATCGGTAGCACCAGA-GGGGGACAGAGCCGATCCCCAGCCTGCGCACTATGCCT
* * * * * * *
13182794 CTTCGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTACGCATACAGAGTTCATTCC
130 CTGCAGCCGGCTCAGGGCCCGAACACTCATTTCGTGGGTTGACTTACGCATACAGAGCTCACTCC
*
13182859 CAGTC-AAAATCAGACCGGACCGAGGGTTGCGGTAGCAAGATTGACAGCAC-CCAGGGGGACCGG
195 CAGTCTAAAATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGACAGCACACCAGGGGGACCGG
*
13182922 GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-TCGGCTGAGCGCCCGCACAATCA
260 GCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCT-GGCTGAGCGCCCGCACAATCA
* ** *
13182979 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTGCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13183025 ATATGGAGTT
Statistics
Matches: 311, Mismatches: 46, Indels: 10
0.85 0.13 0.03
Matches are distributed among these distances:
313 1 0.00
314 96 0.31
316 42 0.14
317 91 0.29
318 80 0.26
319 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (316 bp):
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTT
GTGGCAGCGGGATCGGTAGCACCAGAGGGGGACAGAGCCGATCCCCAGCCTGCGCACTATGCCTC
TGCAGCCGGCTCAGGGCCCGAACACTCATTTCGTGGGTTGACTTACGCATACAGAGCTCACTCCC
AGTCTAAAATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGACAGCACACCAGGGGGACCGGG
CCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACAATCA
Found at i:13183740 original size:26 final size:26
Alignment explanation
Indices: 13183711--13183761 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13183701 GTTGACTTAG
13183711 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
13183737 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
13183762 TGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13184067 original size:159 final size:160
Alignment explanation
Indices: 13183791--13184240 Score: 377
Period size: 159 Copynumber: 2.8 Consensus size: 160
13183781 GTTACGACAA
* * * * * * ***
13183791 CAGGATCGACAGCACACAGGGGG--ATTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGT
1 CAGGACCGACAGCACGCAGGGGGCAACTAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAAC
** ** ** *
13183854 CGGCTGAGCGCCCGTACGC-CTATTTCATGGGTTGGCTTAGGCATAGGGAA-TTCATTCCATGTC
66 CAACTGAGCATCCACACGCTC-ATTTCATGGGTTGGCTTAGGCATA-CGAAGTTCATTCCATGTC
* * *
13183917 TAAGCCCCAG-TCGGACCAAGGGTTGTC-GTAG
129 TAAGCACCAGATCGAACCAAGGGTT-ACGGTAG
* * *
13183948 CGGGACCGACAGCACGCAGAGAGGG-ATC-AGGCCAGA-CCCTGGCTTGCGCATTATGCCTCTTC
1 CAGGACCGACAGCACGCAG-G-GGGCAACTAGGCC-GATCCCTGGCTTGCGCATTATGCCTCTCC
* * * * * *
13184010 AATCAACTCAG--TGCTCGCACGCTCATTTCATGGCTTGACTTAGGCATACAAAGTTCATTCC-T
63 AACCAACTGAGCAT-C-CACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
*** **
13184072 AGTCTAAG-ATTGGATCGAACTGAGGGTTACGGTAG
126 -GTCTAAGCACCAGATCGAACCAAGGGTTACGGTAG
* * * *
13184107 CAGGATCGACAGCACGCAGGGGGCAACTGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGAC
1 CAGGACCGACAGCACGCAGGGGGCAACTAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAAC
* *
13184172 CAGCTGAGCATCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CAACTGAGCATCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
13184237 AGCA
131 AGCA
13184241 TACCGAGTTC
Statistics
Matches: 232, Mismatches: 43, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
157 19 0.08
158 12 0.05
159 194 0.84
160 6 0.03
161 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (160 bp):
CAGGACCGACAGCACGCAGGGGGCAACTAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAAC
CAACTGAGCATCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
AGCACCAGATCGAACCAAGGGTTACGGTAG
Found at i:13184242 original size:26 final size:26
Alignment explanation
Indices: 13184212--13184264 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13184202 GTTGGCTTAG
*
13184212 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
13184238 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
13184264 G
1 G
13184265 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:13184451 original size:26 final size:26
Alignment explanation
Indices: 13184421--13184473 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13184411 GTTGACTTAG
*
13184421 GCATAC-AGAGTTCATCCCCACTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
*
13184447 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13184473 G
1 G
13184474 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13184957 original size:26 final size:26
Alignment explanation
Indices: 13184921--13184973 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13184911 GTTAGCTTAG
*
13184921 GCATACGGAGTTC-TTTCCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13184947 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13184973 G
1 G
13184974 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13186098 original size:157 final size:154
Alignment explanation
Indices: 13185618--13186118 Score: 458
Period size: 159 Copynumber: 3.2 Consensus size: 154
13185608 CCCAGTCTAA
* * **
13185618 GCATACGG-GCTTCATTCCCA-GTCTAAGATCAGACC-GAACTGAGGGTTGCGGTAGTAGGATCG
1 GCATACGGAG-TTCATT-CCATGTCTAAGATCAGACCAG-ACCGAGGGTTGAGACAGTAGGATCG
* * **
13185680 ATAGCACGCA-GGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAG
63 ATA--ACACATGGGGGGATC-GGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
**
13185744 CACCCTCACACTCATTTCATGGGTTGGCTTAG
125 -TGCC-CACACTCATTTCATGGGTTGGCTTAG
* ** * ** *
13185776 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCAGACCGAGGGTTGAGACAGCGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGAGACAGTAGGATCGAT
* * * *
13185840 AACACGTAGTGGGGGATCGAGCCGATCCTCGGCTTGTGCATTAC-GCCTCTCCAGTCGGCTCAGT
65 AACACAT-G-GGGGGATCG-GCCGATCCTCGGCTTGCGCATT-CTGCCTCTCCGGTCGGCTGAGT
* *
13185904 GCCCGTACACTCATTTCATGGCTTGACTTAG
126 GCCC--ACACTCATTTCATGGGTTGGCTTAG
* * *
13185935 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGTGACAATAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGAGACAGTAGGATCGAT
* * * ** * *
13185999 AACACATGGGGGGGTCAGGCCGATCCCCGACTTGCGTGTTCTACCTCTCCGGTCGACTGAGTGCC
65 AACACATGGGGGGATC-GGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
* *
13186064 CACACGTTCGTTTCGTGGGTTGGCTTAG
129 CACAC--TCATTTCATGGGTTGGCTTAG
*
13186092 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13186119 CATACAGAGT
Statistics
Matches: 276, Mismatches: 49, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
155 4 0.01
156 7 0.03
157 87 0.32
158 51 0.18
159 123 0.45
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGAGACAGTAGGATCGATA
ACACATGGGGGGATCGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCA
CACTCATTTCATGGGTTGGCTTAG
Found at i:13186317 original size:26 final size:26
Alignment explanation
Indices: 13186288--13186340 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13186278 GTTGACTTAG
13186288 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
* *
13186314 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
13186340 G
1 G
13186341 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:13186643 original size:159 final size:158
Alignment explanation
Indices: 13186438--13186816 Score: 368
Period size: 158 Copynumber: 2.4 Consensus size: 158
13186428 CATTCAGCTG
* * * * * * * *
13186438 AGCACCCGTACGTTCATTTCATGGGTTGGCTAAGCCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGCACGCTCGTTTCATGGGCTGACTTAGACATACGGAGTTCATTCCATGTCTAAGCCCC
* *
13186503 CACCAGACCAAGGGCTGCGGCAGCAGGACCGACAGCACGTAGGAGGGGACCGGGCCAATCCCTGG
66 CACCAGACCAAGGGCTGCGACAGCAGGACCGACAGCACGTAGG-GGGGACCGGGCCAATCCCAGG
* * * * *
13186568 CTTACGCATTATGCCTCTTC-GGTCGGCTT
130 CTTACGCATTATACATCTCCAGCT-GGCTA
** ** * **
13186597 AGTGCCCGCACGCTCGTTTTGTGGGCTGACTTATACATACGGAGTTCATTCCCA-GT-TCAAGAT
1 AGCACCCGCACGCTCGTTTCATGGGCTGACTTAGACATACGGAGTTCATT-CCATGTCT-AAGCC
**** * * * * **
13186660 CGGTTCAGACCTAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCAG
64 CCCACCAGACCAAGGGCTGCGACAGCAGGACCGACAGCACGTAGGGGGGACCGGGCCAATCCCAG
* *
13186725 GCTTGCGCATTCTACATCTCCAGCTGGCTA
129 GCTTACGCATTATACATCTCCAGCTGGCTA
* * *
13186755 AGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCACCCGCACGCTCGTTTCATGGGCTGACTTAGACATACGGAGTTCATTCCATGTCTAAGC
13186817 ATATGGAGTT
Statistics
Matches: 172, Mismatches: 43, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.02
158 84 0.49
159 82 0.48
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
AGCACCCGCACGCTCGTTTCATGGGCTGACTTAGACATACGGAGTTCATTCCATGTCTAAGCCCC
CACCAGACCAAGGGCTGCGACAGCAGGACCGACAGCACGTAGGGGGGACCGGGCCAATCCCAGGC
TTACGCATTATACATCTCCAGCTGGCTA
Found at i:13186772 original size:158 final size:159
Alignment explanation
Indices: 13186506--13186806 Score: 372
Period size: 158 Copynumber: 1.9 Consensus size: 159
13186496 AAGCCCCCAC
* *
13186506 CAGACCAAGGGCTGCGGCAGCAGGACCGACAGCACGTAGGAGGGGACCGGGCCAATCCCTGGCTT
1 CAGACCAAGGGCTGCGACAGCAGGACCGACAGCACGTAGGAGGGGACCGGGCCAATCCCAGGCTT
* * * * * ** ** *
13186571 ACGCATTATGCCTCTTCGGTCGGCTTAGTGCCCGCACGCTCGTTTTGTGGGCTGACTTATACATA
66 ACGCATTATACATCTCCGCTCGGCTAAGCACCCGCACGCTCGTTTCATGGGCTGACTTAGACATA
13186636 CGGAGTTCATTCCCAGTTCAAGATCGGTT
131 CGGAGTTCATTCCCAGTTCAAGATCGGTT
* * * * **
13186665 CAGACCTAGGGTTGCGACAGCAGGATCGACAGCACGTAGG-GGGGATCGGGCTGATCCCAGGCTT
1 CAGACCAAGGGCTGCGACAGCAGGACCGACAGCACGTAGGAGGGGACCGGGCCAATCCCAGGCTT
* * * * *
13186729 GCGCATTCTACATCTCCAGCT-GGCTAAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
66 ACGCATTATACATCTCC-GCTCGGCTAAGCACCCGCACGCTCGTTTCATGGGCTGACTTAGACAT
13186793 ACGGAGTTCATTCC
130 ACGGAGTTCATTCC
13186807 ATGTCTAAGC
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 80 0.68
159 38 0.32
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
CAGACCAAGGGCTGCGACAGCAGGACCGACAGCACGTAGGAGGGGACCGGGCCAATCCCAGGCTT
ACGCATTATACATCTCCGCTCGGCTAAGCACCCGCACGCTCGTTTCATGGGCTGACTTAGACATA
CGGAGTTCATTCCCAGTTCAAGATCGGTT
Found at i:13186819 original size:26 final size:26
Alignment explanation
Indices: 13186789--13186841 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13186779 GTTGGCTTAG
13186789 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13186815 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13186841 G
1 G
13186842 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13187530 original size:26 final size:26
Alignment explanation
Indices: 13187501--13187553 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13187491 GTTGACTTAG
13187501 GCATACGGAGTTCA-TCCCAGGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13187527 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13187553 G
1 G
13187554 ATCCGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13188033 original size:26 final size:26
Alignment explanation
Indices: 13188003--13188055 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13187993 GTTGGCTTAG
13188003 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13188029 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13188055 G
1 G
13188056 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13188310 original size:71 final size:71
Alignment explanation
Indices: 13188223--13188367 Score: 272
Period size: 71 Copynumber: 2.0 Consensus size: 71
13188213 TCATTCCATG
*
13188223 TCTAAGCCCCAGCTGGACTGAGGGTTGTGGTAGCAGGACCGGTAGTGGGATTGACTGCGTGCAGA
1 TCTAAGCCCCAGCTGGACTGAGGGTTGTGGTAGCAGGACCGGCAGTGGGATTGACTGCGTGCAGA
13188288 GGGGGA
66 GGGGGA
*
13188294 TCTAAGCCCCAGCTGGATTGAGGGTTGTGGTAGCAGGACCGGCAGTGGGATTGACTGCGTGCAGA
1 TCTAAGCCCCAGCTGGACTGAGGGTTGTGGTAGCAGGACCGGCAGTGGGATTGACTGCGTGCAGA
13188359 GGGGGA
66 GGGGGA
13188365 TCT
1 TCT
13188368 GGCTAGTCCC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.19, C:0.19, G:0.41, T:0.21
Consensus pattern (71 bp):
TCTAAGCCCCAGCTGGACTGAGGGTTGTGGTAGCAGGACCGGCAGTGGGATTGACTGCGTGCAGA
GGGGGA
Found at i:13188470 original size:26 final size:26
Alignment explanation
Indices: 13188441--13188494 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
13188431 TGGGTTGACT
* *
13188441 TAGGCACACGGAGTTCATCCCCAGTC
1 TAGGCACACAGAGTTCATCCCCAATC
** *
13188467 TAGGCGTACAGAGTTCATTCCCAATC
1 TAGGCACACAGAGTTCATCCCCAATC
13188493 TA
1 TA
13188495 AGATCGGATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
TAGGCACACAGAGTTCATCCCCAATC
Done.