Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 68 of 138
Found at i:13188779 original size:159 final size:159
Alignment explanation
Indices: 13188564--13188979 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 159
13188554 CCAATCCTGG
*
13188564 GCTTGCGCATTCTACCTCTCCGGTCGGCTAAG-TGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTCTACCTCTCCGGTCGGCTAAGCT-CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * *
13188628 GTGTAGGGAGTTCATTCCATGTCTAAGCCAT-AG-CCGAACCGAGGGTTGTGGCAGCGGGACCGA
65 GCATACGGAGTTCATTCCATGTCTAAG-CATCAGACCGAACCAAGGGTTGTGGCACCAGGACCAA
* * * *
13188691 TAGCACGTAGAGGACGATCGGGCTGACCCCCA
129 CAACACGCAG-GGACGATCAGGCTGACCCCCA
* * * * * * * * *
13188723 GCTTGCGCATTATGCCTCTTCGATCGGCTCAGCTCCTGCACGCTCATTTCGTGGGTTGACTTATG
1 GCTTGCGCATTCTACCTCTCCGGTCGGCTAAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * *
13188788 CATACGGAGTTCATTCC-TAATCTAAG-ATCAGACCGGACCAAGGGTTGTGGCACCAGGATCAAC
66 CATACGGAGTTCATTCCAT-GTCTAAGCATCAGACCGAACCAAGGGTTGTGGCACCAGGACCAAC
* * * *
13188851 AACACGCAGGGAGGATCAGGCTGATCCTCG
130 AACACGCAGGGACGATCAGGCTGACCCCCA
* * ** * * *
13188881 GTTTGCGGATTCTACCTCTCCGGTCCACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCATAGG
1 GCTTGCGCATTCTACCTCTCCGGTCGGCTAAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
13188946 CATACGGAGTTCATTCCATGTCTAAGCATACAGA
66 CATACGGAGTTCATTCCATGTCTAAGCAT-CAGA
13188980 GTTCATTCTC
Statistics
Matches: 206, Mismatches: 44, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 92 0.45
159 107 0.52
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
GCTTGCGCATTCTACCTCTCCGGTCGGCTAAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCATCAGACCGAACCAAGGGTTGTGGCACCAGGACCAACA
ACACGCAGGGACGATCAGGCTGACCCCCA
Found at i:13188949 original size:158 final size:157
Alignment explanation
Indices: 13188467--13188963 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 157
13188457 ATCCCCAGTC
* * * ** * *
13188467 TAGGCGTACAGAGTTCATTCCCAATCTAAGATCGGATTGGACCGAGGGTTGTGACAGCAAGATCG
1 TAGGCATACGGAGTTCATT-CCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * ** * *
13188532 ACAGCATGTAGGGGGGACCAAGCCAATCCTGGGCTTGCGCATTCTACCTCTCCGGTCGGCTAAGT
65 ACAGCACGTAGGGAGGATCAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTAAGC
*
13188597 GCCCGCACGCCCGTTTCGTGGGTTGGCT
130 GCCCGCACGCTCGTTTCGTGGGTTGGCT
** * * * * *
13188625 TAGGTGTAGGGAGTTCATTCCATGTCTAAGCCAT-AG-CCGAACCGAGGGTTGTGGCAGCGGGAC
1 TAGGCATACGGAGTTCATTCCA-ATCTAAG--ATCAGACCGGACCGAGGGTTGTGGCAGCAGGAT
* * * * * * * * * * *
13188688 CGATAGCACGTAGAGGACGATCGGGCTGACCCCCAGCTTGCGCATTATGCCTCTTCGATCGGCTC
63 CGACAGCACGTAG-GGAGGATCAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTA
* * * *
13188753 AGCTCCTGCACGCTCATTTCGTGGGTTGACT
127 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * *
13188784 TATGCATACGGAGTTCATTCCTAATCTAAGATCAGACCGGACCAAGGGTTGTGGCACCAGGATCA
1 TAGGCATACGGAGTTCATTCC-AATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * ** *
13188849 ACAACACGCAGGGAGGATCAGGCTGATCCTCGGTTTGCGGATTCTACCTCTCCGGTCCACTGAGC
65 ACAGCACGTAGGGAGGATCAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTAAGC
*
13188914 GCCCGCACGCTCGTTTCGTGGGTTGGCA
130 GCCCGCACGCTCGTTTCGTGGGTTGGCT
13188942 TAGGCATACGGAGTTCATTCCA
1 TAGGCATACGGAGTTCATTCCA
13188964 TGTCTAAGCA
Statistics
Matches: 262, Mismatches: 70, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
157 6 0.02
158 138 0.53
159 115 0.44
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
CAGCACGTAGGGAGGATCAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTAAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCT
Found at i:13188981 original size:26 final size:26
Alignment explanation
Indices: 13188945--13188997 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13188935 GTTGGCATAG
*
13188945 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
13188971 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
13188997 G
1 G
13188998 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:13189703 original size:26 final size:26
Alignment explanation
Indices: 13189664--13189716 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13189654 GTTGACTTAG
*
13189664 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* *
13189690 GCATACGGAATTCATTCCCAGTGTAA
1 GCATACGGAATTCATCCCCAGTCTAA
13189716 G
1 G
13189717 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:13190924 original size:26 final size:26
Alignment explanation
Indices: 13190888--13190940 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13190878 GTTGACTTAG
13190888 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13190914 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13190940 G
1 G
13190941 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13191437 original size:26 final size:26
Alignment explanation
Indices: 13191386--13191438 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13191376 GTTGGCTTAG
* *
13191386 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGACTAA
*
13191412 GCATATGGAGCTCATTCCCA-GACTAA
1 GCATACGGAGCTCATT-CCATGACTAA
13191438 G
1 G
13191439 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGACTAA
Found at i:13192244 original size:158 final size:156
Alignment explanation
Indices: 13191753--13192274 Score: 509
Period size: 158 Copynumber: 3.3 Consensus size: 156
13191743 GCGCTCGTAT
** * *
13191753 GCTCGTTTTGTGGGTTGACTTAGGCATAC-GAAGTTCATCCCCAGTCTAAGATCAGACTAGATCG
1 GCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACTAGATCG
* * * ** ** * *
13191817 AGGGTTGCGATAGTAGGATCAATAGCACACAGGGGGGATTAGGCCAATCTTTGGCTTACGCATTT
65 AGGGTTGCGATAGCAGGATCGATAGCACGCAGGGGGGATCGGGCTGATC-CTGGCTTGCGCATTT
* * * * *
13191882 CGCCTCTTCGATCGACTGAGCACCCGCAC
129 -GCCTCTCCGATTGGCTAAGCGCCCGCAC
* ** ** ** *
13191911 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG-T--TT-CCATGTCTAAGCCCCAG-CCGGACC
1 GCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACTAGATC
* ** * * *
13191971 GAGGGTTGTGGCAGCAGGACCGGTAGCACGCAGAGGGGGATCGGGCTGATCCTTGGCTAGCGCAT
64 GAGGGTTGCGATAGCAGGATCGATAGCACGCAG-GGGGGATCGGGCTGATCC-TGGCTTGCGCAT
* * *
13192036 TATGCCTCTCCGATTGGCTCAGTGCCCACAC
127 T-TGCCTCTCCGATTGGCTAAGCGCCCGCAC
* *
13192067 GCTCGTTTCATGGGCTGGCTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCAGACTAGATCGA
1 GCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGA
* * * * *
13192132 GGGTTACGATAGCAGGATCGATAGCATGCATGGGGGGATCGGGCTGGTCCCGGCTTGCGTATTCT
66 GGGTTGCGATAGCAGGATCGATAGCACGCA-GGGGGGATCGGGCTGATCCTGGCTTGCGCATT-T
13192197 GCCTCTCCGATTGGCTAAGCGCCCGCAC
129 GCCTCTCCGATTGGCTAAGCGCCCGCAC
*
13192225 GCTCGTTTCATGTGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
1 GCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
13192275 CATATGGAGT
Statistics
Matches: 290, Mismatches: 61, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
154 3 0.01
155 37 0.13
156 77 0.27
157 6 0.02
158 108 0.37
159 55 0.19
160 4 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGA
GGGTTGCGATAGCAGGATCGATAGCACGCAGGGGGGATCGGGCTGATCCTGGCTTGCGCATTTGC
CTCTCCGATTGGCTAAGCGCCCGCAC
Found at i:13193010 original size:875 final size:875
Alignment explanation
Indices: 13190863--13193270 Score: 3058
Period size: 875 Copynumber: 2.8 Consensus size: 875
13190853 GAGCGCCCAC
* *
13190863 ACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * * * * ** *
13190928 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGGAGGATCAGTAACATGCAGGGGGAC
66 TT-CC--TCTAAGA-CAGA-CTGACCGAGGGTTGCGATAGTAGGATCAGTAGCACACAGGGGGAT
* * * * *
13190993 CG-GGTCGATCCTTAGCTTACGCATTCTGCCTCTCTGATCGACTGAGCGCCCGCACGCCCGTTTC
126 CGAGCT-GATCCTTGGCTTACGCATTCCGCCTCTCCGATCGACTGAGCACCCGCACGCCCGTTTC
* * *
13191057 ATGGGTTGGCTTAGGCATAGGGAGTTTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAG
190 ATGGGTTGGCTTAGGCATAGGGAGTTTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
* *
13191122 CAGGACCGGTAGCACGCAGAGGGGGATCGGGCCAATCCCTGGCTAGCGA-ATTATGCCTCTCCGA
255 CAGGACCGGTAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTAGC-ACATTATGCCTCTCCGA
** * * * *
13191186 TCAGCTCAATGCCCACACGCTCATTTCATGGGTTGCCTTATGCATAC-GAAGTTCATTCCTAGCC
319 TTGGCTCAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGCC
* * * *
13191250 TAAGATCTA-ACC-GAATCGAGGGTTACGACAGCAGGATCGACAGCACACATAGGGGGATTGGG-
383 TAAGAT-TAGACCAG-ATCGAGGGTTACGACAGCAGGATCGATAGCACGCATGGGGGGATCGGGC
* * * * * *
13191312 TCGGTCTCTGACTTGCGTATTCTGCCTCTCTGGTTGGCTGAGCGCCTGCACCCTCGTCTCATGGG
446 T-GGTC-CCGGCTTGCGTATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGG
*
13191377 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGCTCATTCCCAGACTAA-GAT
509 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGACTAAGGA-
* * * *
13191441 CAGATCGGACTGAGGGTTACGGTAGCAGGACCAGTAGCAGGATCGACAGCACGCAAGGGGGGACC
573 CAGATCGGACCGAGGGTTGCGGTAGCAGGACCAATAGCAGGATCGACAGCACGC-AGGGGGGATC
* * * * * * * *
13191506 AGACTGATCCCCGACTTGCGCATTCTACCGCTAAGGCTGACTGAGGTCGGCTGAGCGCCCGCACG
637 GGGCTGATCCCCGGCTTGCGCATTCTGCCACTAAGGCCGACTAAGGCCGGCTGAGCGCCCGCACG
13191571 CTAGTTTCGTGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAG
702 CTAGTTTCGTGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAG
* * * *
13191636 GTTGTGGCAGCAAGACTAGTAGCGAGATTGACAGCACGTAGAGGGGGACTGACCCGATCCCCGAC
767 GTTGTGGCAGCAAGA--AGTA-C-AG--TGACAACACGTAGAGAGGGACCGACCCAATCCCCGAC
* * * * *
13191701 TTACATATTCTGCCTCTCTGGCTGGCCTCTTCAGTCGGCTGAGCGCTCGT
826 TTACATATTATGCCTCTCTGGCAGGCCTCTTCACTCGGCTGAGCACCCGT
* *
13191751 ATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG-AT-C--AG---A
1 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* *
13191809 -----CT-----AGA-T---CGAGGGTTGCGATAGTAGGATCAATAGCACACAGGGGGGAT-TAG
66 TTCCTCTAAGACAGACTGACCGAGGGTTGCGATAGTAGGATCAGTAGCACACA-GGGGGATCGA-
** * * *
13191859 GCCAATCTTTGGCTTACGCATTTCGCCTCTTCGATCGACTGAGCACCCGCACGCCCGTTTCATGG
129 GCTGATCCTTGGCTTACGCATTCCGCCTCTCCGATCGACTGAGCACCCGCACGCCCGTTTCATGG
13191924 GTTGGCTTAGGCATAGGGAGTTTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGG
194 GTTGGCTTAGGCATAGGGAGTTTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGG
* *
13191989 ACCGGTAGCACGCAGAGGGGGATCGGGCTGATCCTTGGCTAGCGCATTATGCCTCTCCGATTGGC
259 ACCGGTAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTAGCACATTATGCCTCTCCGATTGGC
* *
13192054 TCAGTGCCCACACGCTCGTTTCATGGGCTGGCTTAGGCATACAGAGTTCATTCCCAGCCTAAGAT
324 TCAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGCCTAAGAT
* * * *
13192119 CAGACTAGATCGAGGGTTACGATAGCAGGATCGATAGCATGCATGGGGGGATCGGGCTGGTCCCG
389 TAGACCAGATCGAGGGTTACGACAGCAGGATCGATAGCACGCATGGGGGGATCGGGCTGGTCCCG
* * *
13192184 GCTTGCGTATTCTGCCTCTCCGATTGGCTAAGCGCCCGCACGCTCGTTTCATGTGTTGGCTTAGG
454 GCTTGCGTATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
*
13192249 CATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGACTAAGGACAGATCGGACC
519 CATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGACTAAGGACAGATCGGACC
* * * *
13192314 GAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGACAGCACGCAGAGGGGATCGGGCTGATCCTC
584 GAGGGTTGCGGTAGCAGGACCAATAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCC
** * * * *
13192379 GGCTTGCGCATTCTGCCACTCTGGCCGACTAAGGCCGGCTGAGTGCCTGTACGCTCGTTTCGTGG
649 GGCTTGCGCATTCTGCCACTAAGGCCGACTAAGGCCGGCTGAGCGCCCGCACGCTAGTTTCGT-G
*
13192444 GTTTGCTTAGGCATAC-GAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGCAG
713 GTTTGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAG
** * * * *
13192508 CAAG-A-T-C-G-G-CAACACGTAGAGAGGGACCGGGCTAATCCCTGATTTGCATATTATGCCTC
777 CAAGAAGTACAGTGACAACACGTAGAGAGGGACCGACCCAATCCCCGACTTACATATTATGCCTC
13192567 TCTGGCAGGCCTCTTC-CTCGGCT-AGGCACCCGT
842 TCTGGCAGGCCTCTTCACTCGGCTGA-GCACCCGT
* * *
13192600 ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCATTCTAAGCGTACGGAGTTCA
1 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * *
13192665 TTCCTTTTCTAAAGAACAGACTGGACCGAGGGTTGCGGTAGTAAGATCGGTAGCACACAGGGGGA
66 TTCC---TCT-AAG-ACAGACT-GACCGAGGGTTGCGATAGTAGGATCAGTAGCACACAGGGGGA
* * * * * *
13192730 TCGAGCTGATCCTCGGCTTACGCATTCCGCCTCTCCGACCGACTGAGCACCCGAAAGTCCATTTC
125 TCGAGCTGATCCTTGGCTTACGCATTCCGCCTCTCCGATCGACTGAGCACCCGCACGCCCGTTTC
*
13192795 ATGGGTTGGCTTAGGCATAGGGAGTTTCCATATCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
190 ATGGGTTGGCTTAGGCATAGGGAGTTTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
* *
13192860 CAGGACCAGTAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTAGCACATTATGCCTCTCCAAT
255 CAGGACCGGTAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTAGCACATTATGCCTCTCCGAT
* *
13192925 TGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAACCTA
320 TGGCTCAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGCCTA
* * * * * * * *
13192990 AGATTAGACCAGACCGAGGGTTCCGACAGCAAGATCGATAGCACGCACGAGGAGATCGAGCCGGT
385 AGATTAGACCAGATCGAGGGTTACGACAGCAGGATCGATAGCACGCATGGGGGGATCGGGCTGGT
* * * * *
13193055 CCCCGGCTTGTGCATTCTACCTCTCCGGTTGGCTGAGC-ACCGTACGCTCGTTTCATGGGTTGGC
450 -CCCGGCTTGCGTATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
* *
13193119 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGACTAAGAACGGATC
514 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGACTAAGGACAGATC
* * * * *
13193184 GGATCGAGGGTTGCGGTAGTAGGACCAATAGCAGGATCGACAGCACACAGGGGGGATCGAGCCGA
579 GGACCGAGGGTTGCGGTAGCAGGACCAATAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGA
13193249 TCCCCGGCTTGCGCATTCTGCC
644 TCCCCGGCTTGCGCATTCTGCC
13193271 GTTTCGATCG
Statistics
Matches: 1321, Mismatches: 158, Indels: 95
0.84 0.10 0.06
Matches are distributed among these distances:
848 1 0.00
849 60 0.05
850 55 0.04
851 2 0.00
853 2 0.00
854 1 0.00
856 2 0.00
858 1 0.00
859 1 0.00
861 69 0.05
862 250 0.19
863 287 0.22
864 6 0.00
867 3 0.00
871 3 0.00
872 1 0.00
873 2 0.00
875 459 0.35
876 62 0.05
881 1 0.00
884 2 0.00
886 1 0.00
887 2 0.00
888 48 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (875 bp):
ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCTCTAAGACAGACTGACCGAGGGTTGCGATAGTAGGATCAGTAGCACACAGGGGGATCGAGC
TGATCCTTGGCTTACGCATTCCGCCTCTCCGATCGACTGAGCACCCGCACGCCCGTTTCATGGGT
TGGCTTAGGCATAGGGAGTTTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC
CGGTAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTAGCACATTATGCCTCTCCGATTGGCTC
AGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGCCTAAGATTA
GACCAGATCGAGGGTTACGACAGCAGGATCGATAGCACGCATGGGGGGATCGGGCTGGTCCCGGC
TTGCGTATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGACTAAGGACAGATCGGACCGA
GGGTTGCGGTAGCAGGACCAATAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGG
CTTGCGCATTCTGCCACTAAGGCCGACTAAGGCCGGCTGAGCGCCCGCACGCTAGTTTCGTGGTT
TGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAAG
AAGTACAGTGACAACACGTAGAGAGGGACCGACCCAATCCCCGACTTACATATTATGCCTCTCTG
GCAGGCCTCTTCACTCGGCTGAGCACCCGT
Found at i:13193174 original size:26 final size:26
Alignment explanation
Indices: 13193123--13193175 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13193113 GTTGGCTTAG
*
13193123 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGACTAA
*
13193149 GCATATGGAGTTCATTCCCA-GACTAA
1 GCATACGGAGTTCATT-CCATGACTAA
13193175 G
1 G
13193176 AACGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGACTAA
Found at i:13193654 original size:158 final size:159
Alignment explanation
Indices: 13193360--13193854 Score: 441
Period size: 159 Copynumber: 3.1 Consensus size: 159
13193350 TGAAGCGTAT
* * * * * * * **
13193360 GGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGTAGGATCGACAGTGCA
1 GGAGTTCATT-CCATGTCTAACACCAGACAGAACCGAGGGTTGCAGCAGTAGGACCGACAGCACA
* * * ** ** * * * *
13193424 CAGGAAGG-ATCGGGTC-GATCCTCGGCTTACGCATT-TCGCCTCTCCGACCGACTGAGCACCCG
65 GAGGGAGGCACCGGG-CAGATCCTCGGCTTGTGCATTAT-GCCTCTCCGGTCGGCTCAACGCCCG
* *
13193486 CACGCCCGTTTCATGGGTTGGCTTAGGCATAG
128 CACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * ** *
13193518 GGAGTTCATTCCATGTCTAACCCCAGCCAG-CCCGAGGGTTGTGGCAGTGGGACCGACAGCACGC
1 GGAGTTCATTCCATGTCTAACACCAGACAGAACCGAGGGTTGCAGCAGTAGGACCGACAGCA--C
*
13193582 AGAGGG-GG-ACCGGGCCGATCC-CTGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAACGCCCG
64 AGAGGGAGGCACCGGGCAGATCCTC-GGCTTGTGCATTATGCCTCTCCGGTCGGCTCAACGCCCG
* **
13193644 AACGCTCGTTTCATGGGTTAACTTAGGCATAC
128 CACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * * ** * *
13193676 GGAGTTCAGTCCCA-GTCTAAGATCAGACTGAATTGAGGGTTGCAGTAGTAGGATCGACAGCACA
1 GGAGTTCA-TTCCATGTCTAACACCAGACAGAACCGAGGGTTGCAGCAGTAGGACCGACAGCACA
* * * * * *
13193740 TAGGGAGGCACCGGGCAGGTCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCTCA
65 GAGGGAGGCACCGGGCAGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCA
*
13193805 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
130 CGCTCGTTTCATGGGTTGGCTTAGGCATAC
13193835 GGAGTTCATTCCATGTCTAA
1 GGAGTTCATTCCATGTCTAA
13193855 GCATATGGAG
Statistics
Matches: 271, Mismatches: 54, Indels: 23
0.78 0.16 0.07
Matches are distributed among these distances:
157 35 0.13
158 114 0.42
159 121 0.45
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GGAGTTCATTCCATGTCTAACACCAGACAGAACCGAGGGTTGCAGCAGTAGGACCGACAGCACAG
AGGGAGGCACCGGGCAGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCAC
GCTCGTTTCATGGGTTGGCTTAGGCATAC
Found at i:13193879 original size:26 final size:26
Alignment explanation
Indices: 13193829--13193881 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13193819 GTTGGCTTAG
*
13193829 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13193855 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13193881 G
1 G
13193882 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13194061 original size:26 final size:26
Alignment explanation
Indices: 13194027--13194077 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13194017 TAACTTAGGC
*
13194027 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAATCTAAGT
* *
13194053 ATACGGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
13194078 ATCGGACCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGT
Found at i:13194403 original size:26 final size:26
Alignment explanation
Indices: 13194367--13194418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13194357 GTTAGCTTAG
13194367 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13194393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13194419 AAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13195127 original size:26 final size:26
Alignment explanation
Indices: 13195090--13195141 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13195080 GTTGACTTAG
*
13195090 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13195116 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13195142 AATTGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13195583 original size:158 final size:158
Alignment explanation
Indices: 13195116--13195617 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
13195106 CCCAGTCTAA
* * * * * *
13195116 GCATACGAAGTTCATTCCCA-GTCTAAAATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGAAGTTCATTCCTATGTCTAAGATCGGATC-GACCGAGGGTTGTGGCAGCAGGATCGAC
* ** * * * * **
13195180 AGCACGAATAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAATGC
65 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGACTGAGCGC
* * * *
13195245 CTGCACGCCCGTTTCATGGGATGGCCTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * * * * * *
13195274 GCATAGGGAGTTCACTCC-ATGTCTAAGCCCCAGCTCAACCAAGGGTTGTGGTAGCGGGACCGAC
1 GCATACGAAGTTCATTCCTATGTCTAAG-ATCGGATCGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
13195338 AGCACGCAGAGGGGCACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGA-CCAGCTCAGC
65 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGA-CTGAGC
* * * *
13195402 ACCCGCACACTCATTTCATGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
13195433 GCATAC-AGAGTTCATTCCTA-GTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCCGGATCAA
1 GCATACGA-AGTTCATTCCTATGTCTAAGATCGGATC-GACCGAGGGTTGTGGCAGCAGGATCGA
* * *
13195496 CAGCATGCAGGGGGGATCGGGTCTG-TCCCCGGCTTTCGTATTATACCTCTCCGATCGACTGAGC
64 CAGCACGCAGGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATACCTCTCCGATCGACTGAGC
* *
13195560 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
13195591 GCATACGAAGTTCATT-CTATGTCTAAG
1 GCATACGAAGTTCATTCCTATGTCTAAG
13195618 CATACGGAGT
Statistics
Matches: 265, Mismatches: 68, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 141 0.53
159 119 0.45
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCTATGTCTAAGATCGGATCGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13195830 original size:26 final size:26
Alignment explanation
Indices: 13195800--13195852 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13195790 GTTGACTTAG
13195800 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13195826 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13195852 G
1 G
13195853 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13196025 original size:26 final size:26
Alignment explanation
Indices: 13195996--13196048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13195986 GTTGACTTAG
*
13195996 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
13196022 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13196048 G
1 G
13196049 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13196134 original size:11 final size:11
Alignment explanation
Indices: 13196118--13196150 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13196108 CCCAGGGCAC
13196118 CATCGTCGGAG
1 CATCGTCGGAG
13196129 CATCGTCGGAG
1 CATCGTCGGAG
*
13196140 CATCGCCGGAG
1 CATCGTCGGAG
13196151 AGCCTAGCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13196637 original size:26 final size:26
Alignment explanation
Indices: 13196607--13196659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13196597 GTTGACTTAT
*
13196607 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13196633 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13196659 G
1 G
13196660 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13197014 original size:159 final size:158
Alignment explanation
Indices: 13196633--13197291 Score: 498
Period size: 159 Copynumber: 4.2 Consensus size: 158
13196623 CCCAGTCTAA
* * * * *
13196633 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGGCA
1 GCATACAGAGTTCATTCTCAGTCTAAGACCAGACCGGATCAAGCGTTACGATAACAGGATCGGCA
* * * *
13196698 GCACGCA-GGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGTCT
66 GCACGCAGGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTCC
* * *
13196762 CGTATGCCCGTTTCATGGGTTGGCTTAT
131 CGCACGCCCGTTTCATGGGTTGGCTTAG
* *
13196790 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGATCGAGCGTTACGATAACAGGATCGGCA
1 GCATACAGAGTTCATTCTCAGTCTAAGACCAGACCGGATCAAGCGTTACGATAACAGGATCGGCA
* * *
13196855 GCACGCAGGGGGGGACCAGGTCGATCCTCGGCTTACGCAATCTGCCTCTTCGATCGGA-TGAGTG
66 GCACGCAGGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGA-CCGACTGAGT-
* *
13196919 CCCGCACGTCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* ** * * * ** * * *
13196949 GCGTAGGGAGTTCATTC-CAAGT-TAAAGCCCCAG-CTGGATCAAGGGTTGTGATAGCGGGATTG
1 GCATACAGAGTTCATTCTC-AGTCT-AAG-ACCAGACCGGATCAAGCGTTACGATAACAGGATCG
* * * * * * * * * * *
13197011 GCAGTACGCAGAGGGGGATCGGGCCGATCCTCGGATTACGCATTATGCCTCTCCAACTGGCTTAG
63 GCAGCACGCAGGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTGAG
* ** * * *
13197076 TGCCTGCACGTTCGTTTCATGGTTTGACTTAA
128 T-CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * * * * *
13197108 GTATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACTAAAG-GTT--G-TAGCAGCAAGATC
1 GCATACAGAGTTCATTCTCAGTCTAAGACCAGACCGGA-TCAAGCGTTACGATA--A-CAGGATC
* * * * * * * * * *
13197169 GACAGCATGCA-GGGGGGACCGGGCCAAT-CTCGGTTTATGCATTCTGGCTCTCCGATCGACGGA
62 GGCAGCACGCAGGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTGA
** *
13197232 GTGCCCGCACGTTCGTTTCAGGGGTTGGCTTAG
127 GT-CCCGCACGCCCGTTTCATGGGTTGGCTTAG
*
13197265 GTATAC-GAAGTTCATTC-CATGTCTAAG
1 GCATACAG-AGTTCATTCTCA-GTCTAAG
13197292 CATACGGAGT
Statistics
Matches: 405, Mismatches: 81, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
156 4 0.01
157 145 0.36
158 66 0.16
159 181 0.45
160 9 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCTCAGTCTAAGACCAGACCGGATCAAGCGTTACGATAACAGGATCGGCA
GCACGCAGGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTCC
CGCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:13197296 original size:26 final size:26
Alignment explanation
Indices: 13197267--13197317 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13197257 TGGCTTAGGT
13197267 ATACGAAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
*
13197293 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
13197318 ATCAAATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:13198140 original size:26 final size:26
Alignment explanation
Indices: 13198111--13198163 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13198101 GTTAACTTAG
* *
13198111 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
13198137 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13198163 G
1 G
13198164 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13198483 original size:26 final size:25
Alignment explanation
Indices: 13198454--13198504 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
13198444 GTTGGCTTAG
13198454 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
13198480 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
13198505 CTGTTTGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:13199812 original size:27 final size:27
Alignment explanation
Indices: 13199782--13199839 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
13199772 CATGGGTTGA
*
13199782 CTAAGGCATATGGAGTTCA-TCCACAGT
1 CTAAGGCATATGGAGTTAATTCC-CAGT
13199809 CTAA-GCATATGGAGTTAATTCCCAGT
1 CTAAGGCATATGGAGTTAATTCCCAGT
13199835 CTAAG
1 CTAAG
13199840 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (27 bp):
CTAAGGCATATGGAGTTAATTCCCAGT
Found at i:13200311 original size:27 final size:27
Alignment explanation
Indices: 13200281--13200338 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
13200271 CATGGGTTGG
*
13200281 CTAAGGCATACGGAGTTCATT-CCATGT
1 CTAAGGCATACAGAGTTCATTCCCA-GT
13200308 CTAA-GCATACAGAGTTCATTCCCAGT
1 CTAAGGCATACAGAGTTCATTCCCAGT
13200334 CTAAG
1 CTAAG
13200339 ATCAGATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (27 bp):
CTAAGGCATACAGAGTTCATTCCCAGT
Found at i:13201031 original size:26 final size:26
Alignment explanation
Indices: 13200995--13201046 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13200985 GTTGGCTTAG
13200995 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13201021 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13201047 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13202218 original size:158 final size:157
Alignment explanation
Indices: 13201752--13202235 Score: 435
Period size: 159 Copynumber: 3.1 Consensus size: 157
13201742 TAAGCATATA
* *
13201752 GAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGGCATCAGGATCGATAGCATGT
1 GAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGCAACAGGATCGATAGCATGT
* * * * * * *
13201816 AG-GGGGATCGAGCTGAT-CCTCGACTTGTGCATTTTGCCTCTCC-AGCTGGTTGAGCGTCCGCA
65 AGAGGGGA-CCAGCTGATCCCT-GGCTTGCGAATTATGCCTCTCCGA-TTGGTTGAGCGCCCGCA
* *
13201878 CGCCCGTTTTATGGGTTGGCTTAGGCATA-G
127 CGCTCGTTTCATGGGTTGGCTTAGGCATACG
* ** * * * * *
13201908 TGAGTTCATT-CCACGT-TCGAGCCCCAGCT-AGACCGACGGTTGTGGCAGCAGGATCGACAGCA
1 -GAGTTCATTCCCA-GTCT-AAG-ATCAGATCAGACCGAGGGTTGCGGCAACAGGATCGATAGCA
** * * * * * * *
13201970 CATAGAGGGGGACCAGACTGATCCCTGGCTTACGTATTATGCCTCTCCGGTCGGCTCAGCACCCG
62 TGTAGA-GGGGACCAG-CTGATCCCTGGCTTGCGAATTATGCCTCTCCGATTGGTTGAGCGCCCG
* * * *
13202035 CACACTCATTTCATGAGTTGACTTAGGCATACG
125 CACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
13202068 GAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTCCGGCAACAGGATCGATAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAACAGGATCGATAGCATGTA
** * * * *
13202133 GAGGGGACCAAGCCAATCCCTGGCTTGCGAATTCTACCTTTCCGATTGGTTGAGCGCCCGCACGT
66 GAGGGGACC-AGCTGATCCCTGGCTTGCGAATTATGCCTCTCCGATTGGTTGAGCGCCCGCACGC
13202198 TCGTTTCATGGGTTGGCTTAGGCATACG
130 TCGTTTCATGGGTTGGCTTAGGCATACG
*
13202226 GAGTTTATTC
1 GAGTTCATTC
13202236 GATGTCTAAG
Statistics
Matches: 252, Mismatches: 61, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
156 4 0.02
157 44 0.17
158 90 0.36
159 106 0.42
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAACAGGATCGATAGCATGTA
GAGGGGACCAGCTGATCCCTGGCTTGCGAATTATGCCTCTCCGATTGGTTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACG
Found at i:13209382 original size:26 final size:26
Alignment explanation
Indices: 13209353--13209405 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13209343 GTTGGCTTAG
* *
13209353 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13209379 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13209405 G
1 G
13209406 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13209552 original size:184 final size:185
Alignment explanation
Indices: 13209194--13209563 Score: 503
Period size: 184 Copynumber: 2.0 Consensus size: 185
13209184 GTTGACTTAG
* * * *
13209194 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTCGAATGAGGGTTGCGACAGCAGGATCGACA
* * ** *** * * ** *
13209259 GCATGCAGGGGTGGACTGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTTGGCTGAGCTC
66 GCACGCAGGGGTGAACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCC
* * *
13209324 CTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAA
131 CTGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
13209379 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCGAATCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTCGAAT-GAGGGTTGCGACAGCAGGATCGAC
* *
13209443 AGCACGCAGGGG-GAACCAGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCG
65 AGCACGCAGGGGTGAACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC-
13209507 CCCT-CACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCCTGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13209563 G
1 G
13209564 TCCCAATCGG
Statistics
Matches: 161, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
184 93 0.58
185 68 0.42
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTCGAATGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGTGAACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCC
CTGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13209757 original size:26 final size:26
Alignment explanation
Indices: 13209720--13209772 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13209710 GTTGACTTAG
13209720 GCATACGAAGTTCATTTGCAATCTAA
1 GCATACGAAGTTCATTTGCAATCTAA
* *
13209746 GCATAC-AGAGTTCATTTTCAGTCTAA
1 GCATACGA-AGTTCATTTGCAATCTAA
13209772 G
1 G
13209773 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTTGCAATCTAA
Found at i:13210479 original size:26 final size:26
Alignment explanation
Indices: 13210429--13210481 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13210419 GTTGACTTAG
*
13210429 GCATACGGAGTTCATCACCAGTCTAA
1 GCATACGGAGTTCATCACCAATCTAA
*
13210455 GCATACGGATTTCATTC-CCAATCTAA
1 GCATACGGAGTTCA-TCACCAATCTAA
13210481 G
1 G
13210482 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAATCTAA
Found at i:13210815 original size:158 final size:158
Alignment explanation
Indices: 13210455--13210946 Score: 489
Period size: 158 Copynumber: 3.1 Consensus size: 158
13210445 ACCAGTCTAA
* * * * *
13210455 GCATACGGATTTCATTCCCAATCTAAGATTGGA-TCGAATCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATTGAACTGGACT-GAGGGTTGCGGTAGCAGGATCGAC
* * * *
13210519 AGCACGCAG-GAGGGA-CGAGGCCGTTCCCTGGCTTACGCAGTCTGCCTCTCCGG-TCGGTTGAG
65 AGCATGCAGAGAGGGATC-AGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCT-GGCTGAG
*
13210581 CGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
128 CGCCC-CACGCTCATTTCGTGGGTTGGCTTAG
* * **** * * * * * * *
13210613 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCGAGGGTGGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCCA-ATCTAAGATTGAACTGGACTGAGGGTTGCGGTAGCAGGATCGAC
* ** * * *
13210677 AGCATGCAGAAAGGGATCAGGTTGATCCCTGGCTTACGCATTATCCCTCTCCGGCTGGCTCAGCG
65 AGCATGCAGAGAGGGATCAGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCG
* *
13210742 CCCCACGCTCATTTCATGGGTTGACTTAG
130 CCCCACGCTCATTTCGTGGGTTGGCTTAG
* * *
13210771 GCATACGGAGTTCATTCCCAATCAAAGATTGAACTGGACTGAGGGTTGCGGTAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGAACTGGACTGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
13210836 GC-T-CATAGGGGGGATC-GAGCCGATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGC
66 GCATGCAGA-GAGGGATCAG-GCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGC
13210898 -CCCCGTACGCTCATTTCGTGGGTTGGCTTAG
129 GCCCC--ACGCTCATTTCGTGGGTTGGCTTAG
13210929 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13210947 ATGTCTATGC
Statistics
Matches: 264, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 8 0.03
157 46 0.17
158 159 0.60
159 49 0.19
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTGAACTGGACTGAGGGTTGCGGTAGCAGGATCGACA
GCATGCAGAGAGGGATCAGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGC
CCCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:13211339 original size:26 final size:26
Alignment explanation
Indices: 13211309--13211358 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13211299 GACTTAGGCG
*
13211309 TACGGAGTTCATCCCCAGTTTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
13211335 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
13211359 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:13211831 original size:158 final size:156
Alignment explanation
Indices: 13211332--13211833 Score: 476
Period size: 158 Copynumber: 3.2 Consensus size: 156
13211322 CCCAGTTTAA
*
13211332 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCG-AGGGTTGCGACAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGATCGAAGGGTTGC-ACAGCAGGATCGGT
* * * * * **
13211396 AGCACGCAAGGGGGACCGGGCTGATCCCCAGTTTGCGCATTCTGCTTCTTCGACCGGCTGAGCGC
64 AGCACGCAGGGGGGATCGGGCTGAT-CCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
*
13211461 CCGCACGC-CTGTTTCATGGGTTGGCTTAG
128 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * *
13211490 GCATAGGGAGTTCATTCTATGTCTAAGCCCCA-ATCGGATCGAA-GGTTGTAGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGATCGAAGGGTTGCA-CAGCAGGATCGG
* * ** * * * * * *
13211553 CAGCACGCAGAGTGGGATAAGG-TCGATCCCTGGCTTACGCATTATGCCTTTTCGGTCAGTTCAG
63 TAGCACGCAG-GGGGGATCGGGCT-GATCCC-GGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAG
* * * *
13211617 CGCCCGCACGCTCGTTTCGTTGATTGACTTAT
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
13211649 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGA-CGAAGGGTTGCACCAGCAGGATAGAT
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGATCGAAGGGTTGCA-CAGCAGGATCGGT
* *
13211713 AGCATGCAGGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
64 AGCACGCAGGGGGGATCGGGCTGATCC-CGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
*
13211778 CCACACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13211807 GCATACGGAGTTCATTCAATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
13211834 CATACGAAGT
Statistics
Matches: 268, Mismatches: 62, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.01
158 151 0.56
159 111 0.41
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGATCGAAGGGTTGCACAGCAGGATCGGTAG
CACGCAGGGGGGATCGGGCTGATCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13212568 original size:26 final size:26
Alignment explanation
Indices: 13212529--13212581 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13212519 GTTGACTTAG
13212529 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
* *
13212555 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13212581 G
1 G
13212582 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13213054 original size:159 final size:156
Alignment explanation
Indices: 13212555--13213056 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 156
13212545 CCTAGTCTAA
* * * *
13212555 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATAGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
* * *
13212620 GCACGCAGGGAGGATCGGGCCGATCCCC-CTCGTACGCATTCTGCCT-TTCCGA-CGGACTGAGA
66 GCACACAGGGGGGATCGGGCCGATCCCCGCTTGT--GCATTCTGCCTCTT-CGATCGG-CTGAGA
* * *
13212682 GCCCGCCCGCCCGTTTCATGGGTTGGCTTAG
127 G-CCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * ** * *
13212713 GCATAGGGAGTTCATT-CCATGTCGAAGCCCCAG-CCAGATCGAGGGTTATGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGA
* * * * * * * *
13212776 TAGCACACAGAGGGGGACCGGGCCAATCCCCGGCTTGCGTATTATGCCTC-TCTGGTTGGCTCAG
64 TAGCACACAG-GGGGGATCGGGCCGATCCCC-GCTTGTGCATTCTGCCTCTTC-GATCGGCTGAG
* *
13212840 TGCCGCACGCTTGTTTCATGGGTTGACTTAG
126 AGCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
13212871 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCCAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
* *
13212936 GCACACAAGGGGGGATCGGGCCGGTCCCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGC
66 GCACAC-AGGGGGGATCGGGCCGATCCCCG-CTTGTGCATTCTGCCTCTTCGATCGGCTGAGAGC
* *
13213001 CTGCACGCTCGTTTCGTGGGTTGCCTTAG
129 C-GCACGCTCGTTTCATGGGTTGACTTAG
*
13213030 GCATATGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13213057 CATACGAAGT
Statistics
Matches: 272, Mismatches: 57, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 172 0.63
159 89 0.33
160 2 0.01
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACACAGGGGGGATCGGGCCGATCCCCGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGAGCCG
CACGCTCGTTTCATGGGTTGACTTAG
Found at i:13213349 original size:171 final size:169
Alignment explanation
Indices: 13213111--13213422 Score: 394
Period size: 171 Copynumber: 1.8 Consensus size: 169
13213101 TTGCGCAGTG
* ** * *
13213111 GGACCGGTAGCAGGATCGGCAGCATGCAGGGGGATGGGGCTGATCCCCAGCTTACGCATTCTGCC
1 GGACCGGCAGCAGGATCGGCAGCACACAGGGGGATCGGGCTGATCCCCAGCTTACGCATTATGCC
** * *
13213176 TCTCCGACT-AGCTGAGTGCCCGCACGCTCGTTACGTGGGTTGGCTTAGGCATACAGAGTTCAT-
66 TCTCCG-CTCAGCTGAGCACCCGCACGCTCGTTACGTGGGTTGACTTAGACATACAGAGTTCATC
*
13213239 TCCATGTCTAAGCCGTAGTCGGATCGAGAGTTGTGGGGGCA
130 GCCA-GTCTAAGCCGTAGTCGGATCGAGAGTTGTGGGGGCA
* * * *
13213280 GGACCGGCAGCGGGATCGGTAGCACACAGAGGAGGATCGGGCTGATCCCCGGCTTACGTATTATG
1 GGACCGGCAGCAGGATCGGCAGCACACAG-GG-GGATCGGGCTGATCCCCAGCTTACGCATTATG
* * * * **
13213345 CCTCTCCGGTCGGCTGAGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGACATATGGAGTTCAT
64 CCTCTCCGCTCAGCTGAGCACCCGCACGCTCGTTACGTGGGTTGACTTAGACATACAGAGTTCAT
13213410 CGCCAGTCTAAGC
129 CGCCAGTCTAAGC
13213423 ATACGGAGTT
Statistics
Matches: 119, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
169 24 0.20
170 3 0.03
171 89 0.75
172 3 0.03
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (169 bp):
GGACCGGCAGCAGGATCGGCAGCACACAGGGGGATCGGGCTGATCCCCAGCTTACGCATTATGCC
TCTCCGCTCAGCTGAGCACCCGCACGCTCGTTACGTGGGTTGACTTAGACATACAGAGTTCATCG
CCAGTCTAAGCCGTAGTCGGATCGAGAGTTGTGGGGGCA
Found at i:13213432 original size:26 final size:26
Alignment explanation
Indices: 13213396--13213447 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13213386 TTGACTTAGA
*
13213396 CATATGGAGTTCA-TCGCCAGTCTAAG
1 CATACGGAGTTCATTC-CCAGTCTAAG
13213422 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13213448 ATCGATCCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13214647 original size:26 final size:26
Alignment explanation
Indices: 13214618--13214670 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13214608 GTTGACTTAG
13214618 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
13214644 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13214670 G
1 G
13214671 ATCGGTTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13214962 original size:159 final size:159
Alignment explanation
Indices: 13214685--13215782 Score: 895
Period size: 159 Copynumber: 6.9 Consensus size: 159
13214675 GTTTGGATTG
* * * ** * * * * *
13214685 AGGGTTGCGACAGCAGGATCGGTAGCACGTAGA-GGGGACCGGACCAATCCCCGACTTGCGCATT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATT
* * * * **
13214749 CTGCCTCTCCGGCCGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGTT
*
13214814 CATTCCATGTCTAAGCCCCAGTCAGACCA
131 CATTCCATGTCTAAGCCCCAGCCAGACCA
* * *
13214843 AGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCC-CGGGCTTGCACAT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTC-GGCTTGCGCAT
* * * * * * *** *
13214907 TATGGCTCTCCGGCCGGCTCAGCACCCGCACACTGGTTTCGTGGGTTGACTTAGGCATACAGAGT
65 TCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGT
* ** * * * * *
13214972 TCATTCCCA-ATCTAAGATCGAACCGGATCG
130 TCATT-CCATGTCTAAGCCCCAGCCAGACCA
* * *
13215002 AGGGTTGTGGCAGCAGGATCGACAGCACGTA-AGTGGGGACCGGGTC-AGTCCTCGGCTTGCGCA
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAG-GGGGACCGGGCCGA-TCCTCGGCTTGCGCA
* * * *
13215065 TTCTACCTCTCCGGCTGACTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAAAG
64 TTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAG
*
13215130 TTCATTCCATGTCTAAGCCCCAGCCGGACCA
129 TTCATTCCATGTCTAAGCCCCAGCCAGACCA
* * * * *
13215161 AGGGTTGTGGCAGCGGGACAGACAGCACGCCGAGGGGGACCGGGCCGATCCTCAGCTTGCACATT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATT
* * * * * *
13215226 ATGCCTCTCCGGTTGGCTCAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTT
66 CTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGTT
* * ** *
13215291 CATTCAAAGTCTAAG-ATCAGACCAGACCG
131 CATTCCATGTCTAAGCCCCAG-CCAGACCA
* * ** ** * *
13215320 AGGGTCGTGGCAGTAGGATTGACAGCACGCA-AATGGGACCAGGCTGATCCTCGGCTTGCGCATT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATT
* * * * * **
13215384 CTGCCTCTCCAGCTAGCTGAGCGCCCGTACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGTT
*
13215449 CATTCCATGTCTAAGCCCCAGTCAGACCA
131 CATTCCATGTCTAAGCCCCAGCCAGACCA
** * * * * **
13215478 AGGGTTGTGGCAGGGGGACCGACAGCATGCAGAGGGGGATCGGGCCGACCCTCGACTTGCAAATT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATT
* * * * ** ** * * * *
13215543 ATACCTCTCC-GATCGGCTCATTGCCCAAACGCTCATTTCGAGGGTTGACTTATGCATAC-GAAG
66 CTGCCTCTCCGGCT-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAG-AG
** *** **
13215606 TTCATTCCCA-GTCTAAG-ATCAGATTGGACTG
129 TTCATT-CCATGTCTAAGCCCCAG-CCAGACCA
* ** * ** * * * * * *
13215637 ATGGTTGCAGCAGTAGGATAGACAGCACACAGGGGGGGACTGGGCCGGTCCCCGGCTTGCACATT
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATT
* * * * * * * * *
13215702 CTACCTTTCCGACCGGTTGAGCGCTCGCACGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTT
66 CTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGTT
*
13215767 CATTCCAAGTCTAAGC
131 CATTCCATGTCTAAGC
13215783 TTAAGGAGTT
Statistics
Matches: 739, Mismatches: 181, Indels: 38
0.77 0.19 0.04
Matches are distributed among these distances:
158 170 0.23
159 558 0.76
160 11 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATT
CTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGTT
CATTCCATGTCTAAGCCCCAGCCAGACCA
Found at i:13215227 original size:318 final size:317
Alignment explanation
Indices: 13214651--13215782 Score: 1283
Period size: 318 Copynumber: 3.6 Consensus size: 317
13214641 TAAGCATATG
* * *** * * ** *
13214651 GAGTTCATTCCCAGTCTAAGATCGGTTTGGATTGAGGGTTGCGACAGCAGGATCGGTAGCACG-T
1 GAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * *
13214715 AGAGGGGACCGGACCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGCCCGCACG
66 AGTGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACG
* *
13214780 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAG
131 CCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAG
* *
13214845 GGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCC-CGGGCTTGCACATTA
196 GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCTC--GCTTGCACATTA
* * * **
13214909 TGGCTCTCCGGCCGGCTCAGCACCCGCACACTGGTTTCGTGGGTTGACTTAGGCATACA
259 TGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACA
* *
13214968 GAGTTCATTCCCAATCTAAGATC-GAACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGT
1 GAGTTCATTCCCAATCTAAGATCAG-ACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * *
13215032 AAGTGGGGACCGGGTCAGTCCTCGGCTTGCGCATTCTACCTCTCCGGCTGACTGAGTGCCCGCAC
65 AAGTGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCAC
** * *
13215097 GCCCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAA
130 GCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAA
* * *
13215162 GGGTTGTGGCAGCGGGACAGACAGCACGCCGAGGGGGACCGGGCCGATCCTCAGCTTGCACATTA
195 GGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCTC-GCTTGCACATTA
* *
13215227 TGCCTCTCCGGTTGGCTCAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACA
259 TGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACA
* * * * * * *
13215286 GAGTTCATT-CAAAGTCTAAGATCAGACCAGACCGAGGGTCGTGGCAGTAGGATTGACAGCACGC
1 GAGTTCATTCCCAA-TCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * * * *
13215350 AAAT-GGGACCAGG-CTGATCCTCGGCTTGCGCATTCTGCCTCTCCAG-CTAGCTGAGCGCCCGT
65 AAGTGGGGACCGGGCCAG-TCCCCGGCTTGCGCATTCTACCTCTCCGGCCGA-CTGAGCGCCCGC
* * *
13215412 ACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
128 ACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
* * * *
13215477 AAGGGTTGTGGCAGGGGGACCGACAGCATGCAGAGGGGGATCGGGCCGACCCTCGACTTGCAAAT
193 AAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCG-CTTGCACAT
* * *** ** * *
13215542 TATACCTCTCCGATCGGCTCATTGCCCAAACGCTCATTTCGAGGGTTGACTTATGCATAC-
257 TATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACA
* ** * * * * *
13215602 GAAGTTCATTCCCAGTCTAAGATCAGATTGGA-CTGATGGTTGCAGCAGTAGGATAGACAGCACA
1 G-AGTTCATTCCCAATCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * * * * ** *
13215666 CAGGGGGGGACTGGGCCGGTCCCCGGCTTGCACATTCTACCTTTCCGACCGGTTGAGCGCTCGCA
64 CAAGTGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCA
* * *
13215731 CGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
129 CGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13215783 TTAAGGAGTT
Statistics
Matches: 690, Mismatches: 111, Indels: 27
0.83 0.13 0.03
Matches are distributed among these distances:
316 7 0.01
317 312 0.45
318 366 0.53
319 5 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (317 bp):
GAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
AGTGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACG
CCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAG
GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCGCTTGCACATTATG
CCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACA
Found at i:13216259 original size:157 final size:148
Alignment explanation
Indices: 13216031--13216323 Score: 385
Period size: 149 Copynumber: 1.9 Consensus size: 148
13216021 AACCGAACCA
**
13216031 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTGGGCTGATCCCCGGCTTACGCATTC
1 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTGGGCTGATCCCCGGCTTAAACATTC
*
13216096 TGCCTCTCCGGTCGGCTGAGCGCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAG-GGAGTTC
66 TGCCTCTCCGGTCGG-TGA--G-CG----CCCGTTTCATGGGTTGGCTTAGGCAT-GCAGAGTTC
13216160 ATTCCATGTCTAAGCCCAGCCAGATCG
122 ATTCCATGTCTAAGCCCAGCCAGATCG
* * *
13216187 AGGGTTGTGGTAGCGGGA-CTGACAGCACGCAGAGGGGGA-TCGGGTTGATCCCCGGCTTAAACA
1 AGGGTTGCGGTAGCAGGATC-GACAGCACGCAG-GGGGGACT-GGGCTGATCCCCGGCTTAAACA
* *
13216250 TTCTGCCTCTCCGGTCGGTGAGTGCCCGTTTCTTGGGTTGGCTTAGGCATGCAGAGTTCATTCCA
63 TTCTGCCTCTCCGGTCGGTGAGCGCCCGTTTCATGGGTTGGCTTAGGCATGCAGAGTTCATTCCA
13216315 TGTCTAAGC
128 TGTCTAAGC
13216324 ATACAGAGTT
Statistics
Matches: 125, Mismatches: 8, Indels: 15
0.84 0.05 0.10
Matches are distributed among these distances:
148 1 0.01
149 46 0.37
153 1 0.01
154 1 0.01
155 1 0.01
156 32 0.26
157 43 0.34
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (148 bp):
AGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTGGGCTGATCCCCGGCTTAAACATTC
TGCCTCTCCGGTCGGTGAGCGCCCGTTTCATGGGTTGGCTTAGGCATGCAGAGTTCATTCCATGT
CTAAGCCCAGCCAGATCG
Found at i:13216346 original size:26 final size:26
Alignment explanation
Indices: 13216296--13216348 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13216286 GTTGGCTTAG
* *
13216296 GCATGCAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13216322 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13216348 G
1 G
13216349 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13217372 original size:26 final size:26
Alignment explanation
Indices: 13217331--13217388 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
13217321 CATGGGTTGG
13217331 CTAAGGCATACAGAGTTCATTCC-ATGT
1 CTAA-GCATACAGAGTTCATTCCTA-GT
*
13217358 CTAAGCATACGGAGTTCATTCCTAGT
1 CTAAGCATACAGAGTTCATTCCTAGT
13217384 CTAAG
1 CTAAG
13217389 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCTAGT
Found at i:13217522 original size:13 final size:13
Alignment explanation
Indices: 13217483--13217522 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
13217473 GCACATTCTG
*
13217483 CCTCTCCGGCCGG
1 CCTCTCCGGCCGA
**
13217496 CCTCTCCGATCGA
1 CCTCTCCGGCCGA
13217509 CCTCTCCGGCCGA
1 CCTCTCCGGCCGA
13217522 C
1 C
13217523 TGAGCGCCCG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.07, C:0.53, G:0.23, T:0.17
Consensus pattern (13 bp):
CCTCTCCGGCCGA
Found at i:13218146 original size:165 final size:166
Alignment explanation
Indices: 13217839--13218217 Score: 364
Period size: 165 Copynumber: 2.3 Consensus size: 166
13217829 CAATCCCGGG
** * * * *
13217839 CTTGCACATTATGCCTCTCCGGTCGGCTTAGCGCCCGTACGCTTGTTTCATGGGTTG-A----C-
1 CTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGAATCCCCA
* ** * * *
13217898 -T-TAGGCATGTGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAAGA
66 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTATGGCAGCAAGA
* * *
13217961 TCAAGAGCACGTAGGGGGGATCGGGCCGATCCCCAA
131 TCAACAGCACGCAAGGGGGATCGGGCCGATCCCCAA
* *
13217997 CTTGCGCATTATGCCTCTCCGACCGGC-CAGCACCTGCACGCTCGTTTCATGGGTTGAATCCCCA
1 CTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGAATCCCCA
* * * *
13218061 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCT-AATCGGACCAAGGGTTATGGTAGCAGG
66 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCAAGGGTTATGGCAGCAAG
** * * * * *
13218125 ATTGACAGCATGCAAGGGGGATTGGGCTGATCCTCGA
130 ATCAACAGCACGCAAGGGGGATCGGGCCGATCCCCAA
* * ** * * *
13218162 CTTGCACATTCTTCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 CTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTT
13218218 AGCTTAGGCA
Statistics
Matches: 174, Mismatches: 37, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 24 0.14
158 25 0.14
162 1 0.01
164 1 0.01
165 98 0.56
166 25 0.14
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (166 bp):
CTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGAATCCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTATGGCAGCAAGA
TCAACAGCACGCAAGGGGGATCGGGCCGATCCCCAA
Found at i:13218261 original size:26 final size:26
Alignment explanation
Indices: 13218225--13218277 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13218215 GTTAGCTTAG
13218225 GCATACGGAGTTCAATCCATGTCTAA
1 GCATACGGAGTTCAATCCATGTCTAA
*
13218251 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCAATCCATGTCTAA
13218277 G
1 G
13218278 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCATGTCTAA
Found at i:13219437 original size:158 final size:156
Alignment explanation
Indices: 13218992--13219485 Score: 437
Period size: 158 Copynumber: 3.1 Consensus size: 156
13218982 TAAGCATATG
* ***
13218992 GAGTTCATTCCCTATCTAAGATCAGACCGGA-TCGAGGGTTGCAACAGCAGGATCGACAGCACGC
1 GAGTTCATT-CCTATCTAAGATCATACCGGACT-GAGGGTTGCGGTAGCAGGATCGACAGCACGC
* * * * *
13219056 AGGGGTGACTTTA-TCGATCCCCGGCTTGCGCATTCTGCCT-TTCCGA-TCGGTTGAGCACCCGC
64 AGGGGGGAC--GAGTCGATCCCTGGCTTGCGCATTCTGCCTCTT-CGACT-GGCTGAGCGCCCGC
* **
13219118 ACGCTTGTTTCATGGGTTGGCTTAGGCATAGG
125 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACA
* * * * * * * *
13219150 GAGTTCATTCGATGTCTAA-ACCCCTACCGGACAGAGGGTTGTGGTAGCTGGA-CTAGCAGCACG
1 GAGTTCATTC-CTATCTAAGA-TCATACCGGACTGAGGGTTGCGGTAGCAGGATCGA-CAGCACG
* * * * * * * * *
13219213 GAGAGAGGGAACGAGCCGGTCCCTGGTTTGCGCATTATGCCTC-TCTGTC-GGCTTAGCGCCCAC
63 CAG-G-GGGGACGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GACTGGCTGAGCGCCCGC
* *
13219276 ACGCTTGTTTCGTGCGTTGACTTAGGCATACA
125 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACA
* *
13219308 GAGTTCATTCCTAGTCTAAGATCATACCAGACTGAGGGTTGCGGTAGCAGGATCGACAACACGCA
1 GAGTTCATTCCTA-TCTAAGATCATACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
* * * *
13219373 GGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTTCGACTGACTGAGTGCCCGCACGC
65 GGGGGGA-CGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGC
* * *
13219438 TCGTTTTGTGGGTTGGCTTAGGCATATA
129 TTGTTTCGTGGGTTGGCTTAGGCATACA
13219466 GAGTTCATTCCATATCTAAG
1 GAGTTCATTCC-TATCTAAG
13219486 CATACGGACT
Statistics
Matches: 260, Mismatches: 59, Indels: 34
0.74 0.17 0.10
Matches are distributed among these distances:
156 4 0.02
157 34 0.13
158 188 0.72
159 30 0.12
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (156 bp):
GAGTTCATTCCTATCTAAGATCATACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
GGGGGACGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTT
GTTTCGTGGGTTGGCTTAGGCATACA
Found at i:13220652 original size:184 final size:185
Alignment explanation
Indices: 13220326--13220747 Score: 587
Period size: 184 Copynumber: 2.3 Consensus size: 185
13220316 GTTGACTTAG
* * * *
13220326 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* *
13220391 ACACGTAAGGGGGGACCGGGCCAATCCTCGACTTATGCATTCTACCTCTCCGGCAGGCTGAGCGC
66 ACACGTAAGGGGGGACCGAGCCAATCCTCGACTTACGCATTCTACCTCTCCGGCAGGCTGAGCGC
* * *
13220456 CTGTATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCGATGTCTAA
131 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* *
13220511 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * ** * * *
13220576 GCATG-CAGGGGGGACCGAGCTGATCCTCGACTTACGTATTCTACCTTTTCGGTCA-GCTGAGCG
66 ACACGTAAGGGGGGACCGAGCCAATCCTCGACTTACGCATTCTACCTCTCCGG-CAGGCTGAGCG
* *
13220639 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGCGTTCATTCCATGTCTAA
130 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * **
13220695 GCATACGGAGTTCATTCCCAGTCTAAAATCGGATCAGATTGAGGGTTGCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
13220748 ACAGGACTAG
Statistics
Matches: 208, Mismatches: 28, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
184 144 0.69
185 64 0.31
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
ACACGTAAGGGGGGACCGAGCCAATCCTCGACTTACGCATTCTACCTCTCCGGCAGGCTGAGCGC
CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:13220698 original size:26 final size:26
Alignment explanation
Indices: 13220669--13220720 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13220659 GTTGGCTTAG
*
13220669 GCATACAGCGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13220695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13220721 AATCGGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13221763 original size:26 final size:26
Alignment explanation
Indices: 13221733--13221783 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13221723 TGGGTTGACT
13221733 TAGGCATACGAAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
*
13221759 TAGGCATACGAAGTTCATTCCCAGT
1 TAGGCATACGAAGTTCATCCCCAGT
13221784 ATAAGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:13222099 original size:26 final size:26
Alignment explanation
Indices: 13222063--13222115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13222053 GTTGGCTTAG
*
13222063 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
13222089 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
13222115 G
1 G
13222116 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:13222298 original size:25 final size:26
Alignment explanation
Indices: 13222269--13222321 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
13222259 TGGGTTGACT
13222269 TAGGCA-ATGAAGTTCATCCCCAGTC
1 TAGGCATATGAAGTTCATCCCCAGTC
* *
13222294 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATATGAAGTTCATCCCCAGTC
13222320 TA
1 TA
13222322 AGACCGAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
TAGGCATATGAAGTTCATCCCCAGTC
Found at i:13222603 original size:145 final size:143
Alignment explanation
Indices: 13222331--13222603 Score: 341
Period size: 145 Copynumber: 1.9 Consensus size: 143
13222321 AAGACCGAAC
* * * * *
13222331 CAGATCGAGGGTTACGGTAGCAAGATCGGTAGAACGTAAGGGGGACCGGGCCGATCCCCGGCTTT
1 CAGACCGAGGGTTACGGCAGCAAGACCGGTAGAACGTAAGGGGGACCGGGCCGATCCCCGACTTG
* * *
13222396 CGCATTCTGCCTCTCGACCGGTTGAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAAG
66 CGCAATCTGCCTCTCGACCGGCTGAACACCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAAG
13222461 TCTAAGCCCCAGT
131 TCTAAGCCCCAGT
* * * ** *
13222474 CAGACCGAGGGTTATGGCAGCGAGACCGGTAGCACGTAGAGGGGGACCGGGTTGATCCCTGACTT
1 CAGACCGAGGGTTACGGCAGCAAGACCGGTAGAACGTA-AGGGGGACCGGGCCGATCCCCGACTT
* * * * *
13222539 GCGCAATCTGCCTCTCCGGCTGGCTGAACGCCCGCACG-CTAGTTTCGTGGGTTGGCTTAGGCAT
65 GCGCAATCTGCCTCT-CGACCGGCTGAACACCCACACGCCCA-TTTCGTGGGTTGGCTTAGGCAT
13222603 A
128 A
13222604 CGGAGTTCAT
Statistics
Matches: 108, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
143 32 0.30
144 37 0.34
145 39 0.36
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (143 bp):
CAGACCGAGGGTTACGGCAGCAAGACCGGTAGAACGTAAGGGGGACCGGGCCGATCCCCGACTTG
CGCAATCTGCCTCTCGACCGGCTGAACACCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAAG
TCTAAGCCCCAGT
Found at i:13222603 original size:536 final size:536
Alignment explanation
Indices: 13221604--13222616 Score: 1532
Period size: 536 Copynumber: 1.9 Consensus size: 536
13221594 AGGGTTATGG
* * * *
13221604 CAGCAGGACCAGAAGCAGGATCGACAGCATGCAGGGGGGACCGGGTCGATCCCCTACTTGCGTAT
1 CAGCAGGACCAGAAGCAGGATCGACAGCACGCAAGGAGGACCAGGTCGATCCCCTACTTGCGTAT
* *
13221669 TCTGCCTCTCTGACCGACCTCTTCGACTGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGACTT
66 TCTACCTCTCTGACCGACCTCTCCGACTGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGACTT
* *
13221734 AGGCATACGAAGTTCATCCCCAGTCTAGGCATACGAAGTTCATTCCCAGTATAAGATCGAACTAG
131 AGGCATACGAAGTTCATCCCCAGTCTAGGCATACGAAGTTCATTCCCAGTATAAGACCGAACCAG
* * * * *
13221799 ATCGAGGGTTACGGTAGCAGGATCGGCAGAACGCAGAGGGGACCGGGTCGATCCTCAGCTTTCGG
196 ATCGAGGGTTACGGTAGCAAGATCGGCAGAACGAAGAGGGGACCGGGCCGATCCCCAGCTTTCGC
* ** *
13221864 ATTCTACCTCTCCGATCGGTTGAGCACCGTACGCCCATTTCATGGGTTGGCTTAGGCATAAGTGT
261 ATTCTACCTCTCCGACCGGTTGAGCACCACACGCCCATTTCATGGGTTGGCTTAGGCATAAGTCT
* * * * *
13221929 AAGCCCTAGTCGGACCGAGGTTGTGGCAGCGGGACCAGTAACACGCAGAGAGGGATCAGGTTGAT
326 AAGCCCCAGTCAGACCGAGGTTATGGCAGCGAGACCAGTAACACGCAGAGAGGGACCAGGTTGAT
* * * *
13221994 CCCCGACTTGTGCATTCTACCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
391 CCCCGACTTGCGCAATCTACCTCTCCGACTGGCTGAACGCCCGCACGCTAGTTTCGTGGGTTGGC
13222059 TTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACC
456 TTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACC
13222124 GGACCGAGGGTTGCGA
521 GGACCGAGGGTTGCGA
*
13222140 CAGCAGGACCAGAAGCAGGATCGACAGCACGTAAGGAGGACCAGGTCGAT-CCCTGACTTGCGTA
1 CAGCAGGACCAGAAGCAGGATCGACAGCACGCAAGGAGGACCAGGTCGATCCCCT-ACTTGCGTA
* * *
13222204 TTCTACCTCTCTGACTGGCCTCTCCG-GTCGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGAC
65 TTCTACCTCTCTGACCGACCTCTCCGACT-GGTTGAGTGCCCGCACACTCGTTTCATGGGTTGAC
* * * *
13222268 TTAGGCA-ATGAAGTTCATCCCCAGTCTAGGCATATGGAGTTCATTCCCAGTCTAAGACCGAACC
129 TTAGGCATACGAAGTTCATCCCCAGTCTAGGCATACGAAGTTCATTCCCAGTATAAGACCGAACC
* *
13222332 AGATCGAGGGTTACGGTAGCAAGATCGGTAGAACGTAAG-GGGGACCGGGCCGATCCCCGGCTTT
194 AGATCGAGGGTTACGGTAGCAAGATCGGCAGAACG-AAGAGGGGACCGGGCCGATCCCCAGCTTT
* *
13222396 CGCATTCTGCCTCT-CGACCGGTTGAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAA
258 CGCATTCTACCTCTCCGACCGGTTGAGCA-CCACACGCCCATTTCATGGGTTGGCTTAGGCATAA
* * * * *
13222460 GTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCGAGACCGGTAGCACGTAGAGGGGGACCGGG
322 GTCTAAGCCCCAGTCAGACCGA-GGTTATGGCAGCGAGACCAGTAACACGCAGAGAGGGACCAGG
* * *
13222525 TTGATCCCTGACTTGCGCAATCTGCCTCTCCGGCTGGCTGAACGCCCGCACGCTAGTTTCGTGGG
386 TTGATCCCCGACTTGCGCAATCTACCTCTCCGACTGGCTGAACGCCCGCACGCTAGTTTCGTGGG
13222590 TTGGCTTAGGCATACGGAGTTCATTCC
451 TTGGCTTAGGCATACGGAGTTCATTCC
13222617 CAGTTTAAAA
Statistics
Matches: 426, Mismatches: 46, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
534 13 0.03
535 174 0.41
536 239 0.56
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (536 bp):
CAGCAGGACCAGAAGCAGGATCGACAGCACGCAAGGAGGACCAGGTCGATCCCCTACTTGCGTAT
TCTACCTCTCTGACCGACCTCTCCGACTGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGACTT
AGGCATACGAAGTTCATCCCCAGTCTAGGCATACGAAGTTCATTCCCAGTATAAGACCGAACCAG
ATCGAGGGTTACGGTAGCAAGATCGGCAGAACGAAGAGGGGACCGGGCCGATCCCCAGCTTTCGC
ATTCTACCTCTCCGACCGGTTGAGCACCACACGCCCATTTCATGGGTTGGCTTAGGCATAAGTCT
AAGCCCCAGTCAGACCGAGGTTATGGCAGCGAGACCAGTAACACGCAGAGAGGGACCAGGTTGAT
CCCCGACTTGCGCAATCTACCTCTCCGACTGGCTGAACGCCCGCACGCTAGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAAACC
GGACCGAGGGTTGCGA
Found at i:13223330 original size:26 final size:26
Alignment explanation
Indices: 13223294--13223346 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13223284 GTTAACTTAG
13223294 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
13223320 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13223346 G
1 G
13223347 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13223673 original size:26 final size:26
Alignment explanation
Indices: 13223644--13223714 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
13223634 AGGCATACGG
13223644 AGTTCATCCCCAGTCTAAGCATATGA
1 AGTTCATCCCCAGTCTAAGCATATGA
*
13223670 AGTTCATCCCCAGTCTAAGCATATGG
1 AGTTCATCCCCAGTCTAAGCATATGA
*
13223696 AGTTCATTCCCAGTCTAAG
1 AGTTCATCCCCAGTCTAAG
13223715 ATCAGACCGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCATATGA
Found at i:13225233 original size:26 final size:26
Alignment explanation
Indices: 13225203--13225255 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13225193 GTTGGCTTAG
13225203 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
13225229 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
13225255 G
1 G
13225256 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:13225486 original size:196 final size:195
Alignment explanation
Indices: 13225098--13225621 Score: 617
Period size: 196 Copynumber: 2.7 Consensus size: 195
13225088 GGGTTTTGGC
* * * * * * * * *
13225098 AGCAGGATCGACAGCACGTAGGGGGGACCGGGCCAATCCTCGA-TTACGCATTCTGCCTTTTCGG
1 AGCAAGATCAACAGCACGTAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACC-TCTCCG
* * * * *
13225162 TCGGCT-AGGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
65 CCGACTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
* *
13225226 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAAGGTTGCGATAGCAGGACCA
129 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTGCGATAGCAGGACCA
13225291 GT
194 GT
* * * *
13225293 AGCAAGATCAACAGCACGTAGGGGGGATC-GAGCTTG-TCCCTGGCTTGCGCATTCTACCTCTCT
1 AGCAAGATCAACAGCACGTAGGGGGGACCAG-GC-CGATCCCCGACTTGCGCATTCTACCTCTC-
* * * *
13225356 GGCTGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGC
63 CGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
* * * * *
13225421 CTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGA-TCGGACCGATGGTTGCGGTAGTAGGAC
128 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAAGGTTGCGATAGCAGGAC
13225485 CAGT
192 CAGT
* ** * *
13225489 AGCAGGATCAGTAGCACGTAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGC
1 AGCAAGATCAACAGCACGTAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGC
** * *
13225554 CGGTTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
13225619 AGC
131 AGC
13225622 CCCAGTCAGA
Statistics
Matches: 278, Mismatches: 43, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
194 1 0.00
195 100 0.36
196 175 0.63
197 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (195 bp):
AGCAAGATCAACAGCACGTAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGC
CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTGCGATAGCAGGACCAGT
Found at i:13225781 original size:26 final size:26
Alignment explanation
Indices: 13225752--13225804 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13225742 GTTGACTTAG
13225752 GCATACAGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
13225778 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
13225804 G
1 G
13225805 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:13226081 original size:159 final size:160
Alignment explanation
Indices: 13225886--13226282 Score: 405
Period size: 159 Copynumber: 2.5 Consensus size: 160
13225876 GCCCATTCTA
* * * *
13225886 CCTCTCCGG-CTGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-GGAAGTTC
1 CCTCTCCGGTCTG-CTAAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTC
* * * *
13225949 ATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAAAGGG
64 ATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCAAAGAG
* * * *
13226013 GGATCGGGTCGATCTTCGACTTGCATATTATG
129 GGACCGGGTCGATCCTCGACTTACACATTATG
* * * * **
13226045 CCTCTCTGG-CTAGCTCAA-CG-CTCGGACGGTCGTTTCATGGGTTGACTTAGGTGTACAGAGTT
1 CCTCTCCGGTCT-GCT-AAGCGCCT-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTT
* * * * * **
13226107 CATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTTTGGCAGCAGGATCGATATCACGTAGTG
63 CATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCAAAG
* * *
13226170 AGGGACCGGGTCGGTCCTCGACTTACGCATTCTG
127 AGGGACCGGGTCGATCCTCGACTTACACATTATG
* * *
13226204 CCTTTCCGGTCTGCTAAGCGCCTGCATGCTCGTTTCATGAGTTGGCTTAGGCATACAGAGTTCAT
1 CCTCTCCGGTCTGCTAAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
13226269 TCCATGTCTAAGCA
66 TCCATGTCTAAGCA
13226283 TATGGAGTTC
Statistics
Matches: 190, Mismatches: 37, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
158 9 0.05
159 170 0.89
160 11 0.06
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (160 bp):
CCTCTCCGGTCTGCTAAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
TCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCAAAGAGGG
ACCGGGTCGATCCTCGACTTACACATTATG
Found at i:13226284 original size:26 final size:26
Alignment explanation
Indices: 13226254--13226306 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13226244 GTTGGCTTAG
13226254 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
13226280 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13226306 G
1 G
13226307 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13226524 original size:195 final size:194
Alignment explanation
Indices: 13226169--13226671 Score: 596
Period size: 195 Copynumber: 2.6 Consensus size: 194
13226159 ATCACGTAGT
* * * * * *
13226169 GAGGGACCGGGTCGGTCCTCGACTTACGCATTCTGCCTTTCCGGTCTGCTAAGCGCCTGCATGCT
1 GAGGGACCAGGTAGATCCCCGACTTACGCATTCTGCCTCT-CGGTC-GCTGAGCGCCTGCATGCT
* * * *
13226234 CGTTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCC
64 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* * * * *
13226299 AGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGACCAGTAGCAAGATCGACAGCACGCA
129 AGTCCAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGACCAGTAGCAAGATCGACAGCACGCA
13226364 G
194 G
* * *
13226365 GAGGGATCGGGCTAG-TCCCCGGCTTACGCATTCTGCCTCTCTGGTCGACTGAGCGCCTGCATGC
1 GAGGGACCAGG-TAGATCCCCGACTTACGCATTCTGCCTCTC-GGTCG-CTGAGCGCCTGCATGC
*
13226429 TCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCATACGGAGTTTATTCC
63 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * * *
13226493 CAGTCCAAGATCGAACCAGATCGAGGGTTGCGGCTGCAGGACCAGTAGCAAGATCGGCAGCACGT
128 CAGTCCAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGACCAGTAGCAAGATCGACAGCACGC
13226558 AG
193 AG
* * * * * * * * * * *
13226560 GGGGGACCAGGTCGATCCTCGACTTGCGCAATCTGCCTCTCCGCCGGTTGAGCACCCGCACGCTC
1 GAGGGACCAGGTAGATCCCCGACTTACGCATTCTGCCTCTCGGTC-GCTGAGCGCCTGCATGCTC
* * *
13226625 GGTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCGATGTCTAAGC
65 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13226672 CCCAGTCGGA
Statistics
Matches: 264, Mismatches: 37, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
194 41 0.16
195 146 0.55
196 75 0.28
197 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (194 bp):
GAGGGACCAGGTAGATCCCCGACTTACGCATTCTGCCTCTCGGTCGCTGAGCGCCTGCATGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCCAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGACCAGTAGCAAGATCGACAGCACGCAG
Found at i:13227053 original size:158 final size:155
Alignment explanation
Indices: 13226891--13227303 Score: 368
Period size: 159 Copynumber: 2.6 Consensus size: 155
13226881 CGAGCCAATC
* * * *
13226891 CCCGGCTTGCCCATTCTGCCTCTCCGGCCGATTGAGCACCCACACGCCCATTTTGTGGGTTGGCT
1 CCCGGCTTGCACATTCTGCCTCTCCGGCCGATTGAGCACCCA-ACGCTCGTTTCGTGGGTTGGCT
* * *
13226956 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTAG-ACTGAGGGTTGTGGCAGCGGGACC
65 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC--GCACTGAGGGTTGCGGCAGCAGGACC
**
13227020 GGTAGCACACAGAGAGGGACCGGG-CAGAT
128 GACAGCACACAG-GAGGGACCGGGTC-GAT
* * * * * * **
13227049 CCCGGGCTTGCACATTATGCCACTCTGGCTGGCTTAGTGC-CTAAACGCTCGTTCTCGTGGGTTG
1 CCC-GGCTTGCACATTCTGCCTCTCCGGC-CGATT-GAGCACCCAACGCTCGTT-TCGTGGGTTG
* * * ** *
13227113 ACTTAGGCATACGAAGTTCATTCCCA-ATCTAAGATCGAACGCACTGAGGGTTGCGGCAGCAGGA
62 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACGCACTGAGGGTTGCGGCAGCAGGA
* ** *
13227177 TCGACAGCACGTAGGGGGGACCGGGTCGAT
126 CCGACAGCACACAGGAGGGACCGGGTCGAT
* * ** ** *
13227207 CCTCGGCTTGCGCATTCTACCAT-TCCAACCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGG
1 CC-CGGCTTGCACATTCTGCC-TCTCCGGCCGATTGAGCACCC-AACGCTCGTTTCGTGGGTTGG
13227271 CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
63 CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13227304 GTACGGAGTT
Statistics
Matches: 198, Mismatches: 45, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
156 6 0.03
157 38 0.19
158 46 0.23
159 59 0.30
160 43 0.22
161 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
CCCGGCTTGCACATTCTGCCTCTCCGGCCGATTGAGCACCCAACGCTCGTTTCGTGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACGCACTGAGGGTTGCGGCAGCAGGACCGAC
AGCACACAGGAGGGACCGGGTCGAT
Found at i:13227326 original size:26 final size:26
Alignment explanation
Indices: 13227279--13227328 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13227269 GGCTTAGGCA
*
13227279 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATATCTAAGCG
13227305 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
13227329 ATCGAACTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCG
Found at i:13227446 original size:185 final size:183
Alignment explanation
Indices: 13227119--13227504 Score: 537
Period size: 185 Copynumber: 2.1 Consensus size: 183
13227109 GTTGACTTAG
* *
13227119 GCATACGAAGTTCATTCCCAATCTAAGATCGAACGCACTGAGGGTTGCGGCAGCAGGATCGACAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACGCACTGAGGGTTGCGGCAGCAGGATAGACAG
* *
13227184 CACGTAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCATTCCAACCGGCTGAGCACCC
66 CACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCAACCATTCCAACCGGCTGAGCACCC
13227249 GAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 GAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
13227302 GCGTACGGAGTTCATTCCCAATCTAAGATCGAACTGGA-TCGAGGGTTGTGGCAGCGGGATAGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAAC-GCACT-GAGGGTTGCGGCAGCAGGATAGAC
* * * *
13227366 AGCACGCAGAGGGGGACCGGG-CTGATCCTCGGCTTGCGCATT-AAGCC-TCTTCGATCGGTTGA
64 AGCACGCAG-GGGGGACCGGGTC-GATCCTCGGCTTGCGCATTCAA-CCAT-TCCAACCGGCTGA
* * * *
13227428 GCACCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCGTGTCTAA
125 GCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13227487 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13227505 TAGTGTAAGA
Statistics
Matches: 179, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
183 33 0.18
184 33 0.18
185 113 0.63
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGAACGCACTGAGGGTTGCGGCAGCAGGATAGACAG
CACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCAACCATTCCAACCGGCTGAGCACCC
GAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13227904 original size:26 final size:26
Alignment explanation
Indices: 13227875--13227927 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13227865 GTTGACTTAG
*
13227875 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13227901 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13227927 G
1 G
13227928 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13228409 original size:26 final size:26
Alignment explanation
Indices: 13228373--13228424 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13228363 GTTGGCTTAG
*
13228373 GCATACGGAGTTC-TTTCCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13228399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13228425 AATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13228598 original size:26 final size:26
Alignment explanation
Indices: 13228569--13228621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13228559 GTTAGCTTAG
13228569 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13228595 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13228621 G
1 G
13228622 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13228926 original size:697 final size:695
Alignment explanation
Indices: 13227870--13229122 Score: 1610
Period size: 697 Copynumber: 1.8 Consensus size: 695
13227860 CGTCTGTTGA
* *
13227870 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATTAGAC
1 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * ** * *
13227935 CAGACCGAGGGTTACGGTAGTAGGATCGACAGCACGTAGGAGGGATCAGGTTGATCCCCGGCTGG
66 CAGACCGACGGTTACGACAGCAGGATCGACAGCACGTAGGAGGGATCAGGCCGATCCCCGACTGA
* * * * **
13228000 TGCATTCTGCCACTTCGGTCGGTTGAACGCCCATAAGCCCGTTTCGTGGGTCTTAGGCATAGGGA
131 CGCATTCTACCACTCCGATCGACTGAACGCCCATAAGCCCGTTTCGTGGGTCTTAGGCATAGGGA
* *
13228065 GTTCATTCCATGTCTAAGCCCCAAGCAGACCAAGGGTTGTGGCAGCAGGACCGACAACACACGGA
196 GTTCATTCCATGTCTAAGCCCCAAGCAGACCAAGAGTTGTGGCAGCAGGACCGACAACACACAGA
* **** * * * ***
13228130 GGGGGATCGGGCCGATCTTTGGCTTGCTCATTATGCCTCTCTGGTTGGCTCAACTCCTACACGCT
261 GAGGGATCGGGCCGATCCCCAGCTTGCGCATCATGCCTCTCCGACCGGCTCAACTCCTACACGCT
* * * *
13228195 CGTTTTGTGGGTTGACTTTGACATACGGAGTTCATTTCC-AGCCTAGGATC-GAACCAGACCGAA
326 CGTTTTATGGGTTGACTTAGACATACAGAGTTCA-TTCCTAGCCTAAGATCAG-ACCAGA-CGAA
* * * **
13228258 -GGTTGTGATAGTAGGATCGACAGCACGCA-GGGGGGACCTGGTCGGTCCCCAGCTTGCACATTC
388 GGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGGACCAGACCGGTCCCCAGCTTGCACATTC
* * ** * *
13228321 TGCCTCTTCGGTC-GACTGAGCGCCCACATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
453 CGCCTCTCCGACCAG-CTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
* *
13228385 CTTTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGATCGAACCGAGGGTTGTGA
517 CATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCGGATCGAACCGAGGGTTGTGA
13228450 CAGCAGGACCAGTAACAGGATCGATAACATGCAGAGGGGCCTAGGTCAATCCCCGGCTTGTGCAT
582 CAGCAGGACCAGTAACAGGATCGATAACATGCAGAGGGGCCTAGGTCAATCCCCGGCTTGTGCAT
13228515 TCTGCCTCTCCGATCGACTGAGTGCCCGCATGCTCATTTTGTGGGTTAG
647 TCTGCCTCTCCGATCGACTGAGTGCCCGCATGCTCATTTTGTGGGTTAG
* *
13228564 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA-TCCCTAGTCTAAGATCGGA
1 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC-AGTCTAAGATCAGA
** * * * *
13228628 CTGGACTGACGGTTGCGACAGCAGGATCGACAGCATGTA-GAGGGGATCGGGCCGATCCCCGACT
65 CCAGACCGACGGTTACGACAGCAGGATCGACAGCACGTAGGA-GGGATCAGGCCGATCCCCGACT
* * * * *
13228692 TACGTATTCTACCTCTCCGATCGACTGAGCGCCTGCA-CA-CCCGTTTCGTGGGTTGGCTTAGGC
129 GACGCATTCTACCACTCCGATCGACTGAACGCC--CATAAGCCCGTTTCGTGGG-T--CTTAGGC
* * * * *
13228755 ATAGGGAGTTCATTCCATGTCTAAGCGCC-AGCCGGACCAAGAGTTGTGGCAGCGGGACCGATAG
189 ATAGGGAGTTCATTCCATGTCTAAGCCCCAAG-CAGACCAAGAGTTGTGGCAGCAGGACCGACAA
* * *
13228819 CACGCAGAGAGGGATCGGGTCGATCCCCAGCTTGCGCATCATGCCTCTCCGACCGGCTCAGCTCC
253 CACACAGAGAGGGATCGGGCCGATCCCCAGCTTGCGCATCATGCCTCTCCGACCGGCTCAACTCC
* * * *
13228884 TGA-ACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGATCG
318 T-ACACGCTCGTTTTATGGGTTGACTTAGACATACAGAGTTCATTCCTAGCCTAAGATCAGACCA
* * *
13228948 GACTAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGGACCAGACCGGTCCCCAGCTTGC
382 GACGAAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGGACCAGACCGGTCCCCAGCTTGC
* * * *
13229013 GCATTCCGCCTCTCCGACCAGCTGAGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
447 ACATTCCGCCTCTCCGACCAGCTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACG
13229078 GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
512 GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
13229123 GATCAGACTG
Statistics
Matches: 467, Mismatches: 78, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
693 6 0.01
694 138 0.30
695 2 0.00
696 11 0.02
697 186 0.40
698 123 0.26
699 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (695 bp):
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGACGGTTACGACAGCAGGATCGACAGCACGTAGGAGGGATCAGGCCGATCCCCGACTGA
CGCATTCTACCACTCCGATCGACTGAACGCCCATAAGCCCGTTTCGTGGGTCTTAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAAGCAGACCAAGAGTTGTGGCAGCAGGACCGACAACACACAGA
GAGGGATCGGGCCGATCCCCAGCTTGCGCATCATGCCTCTCCGACCGGCTCAACTCCTACACGCT
CGTTTTATGGGTTGACTTAGACATACAGAGTTCATTCCTAGCCTAAGATCAGACCAGACGAAGGG
TTGCGATAGCAGGATCGACAGCACGCAGGGGGGGACCAGACCGGTCCCCAGCTTGCACATTCCGC
CTCTCCGACCAGCTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCGGATCGAACCGAGGGTTGTGACAGC
AGGACCAGTAACAGGATCGATAACATGCAGAGGGGCCTAGGTCAATCCCCGGCTTGTGCATTCTG
CCTCTCCGATCGACTGAGTGCCCGCATGCTCATTTTGTGGGTTAG
Found at i:13228980 original size:159 final size:157
Alignment explanation
Indices: 13228595--13229097 Score: 521
Period size: 159 Copynumber: 3.2 Consensus size: 157
13228585 CCCAGTCTAA
* * * * *
13228595 GCATACGGAGTTCA-TCCCTAGTCTAAGATCGGACTGGACTGACGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGAC-GGACTAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
13228659 AGCATGTAGAGGGGATCGGGCCGATCCCC-GACTTACGTATTCTACCTCTCCGATCGACTGAGCG
64 AGCACGTAGAGGGGATCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCT
* * *
13228723 CCTGCACACCCGTTTCGTGGGTTGGCTTAG
128 CCTGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * * * *
13228753 GCATAGGGAGTTCATTCCATGTCTAAGCGCCAGCCGGACCAAGAGTTGTGGCAGCGGGACCGATA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACGGACTAAGGGTTGCGGCAGCAGGATCGACA
* * *
13228818 GCACGCAGAGAGGGATCGGGTCGATCCCCAGCTTGCGCA-TCATGCCTCTCCGACCGGCTCAGCT
65 GCACGTAGAG-GGGATCGGGCCGATCCCCAGCTTGCGCATTC-TGCCTCTCCGACCGGCTGAGCT
* * *
13228882 CCTGAACGCTCGTTTTATGGGTTGACTTAG
128 CCTGCACGCTCGTTTCATGGGTTGGCTTAG
* *
13228912 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGATCGGACTAAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGA-CGGACTAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
13228976 AGCACGTAGGGGGGGACCAGACCGGTCCCCAGCTTGCGCATTCCGCCTCTCCGACCAGCTGAGCG
64 AGCACGTA-GAGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC-
13229041 TCC-GCACGCTCGTTTCATGGGTTGGCTTAG
127 TCCTGCACGCTCGTTTCATGGGTTGGCTTAG
13229071 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13229098 CATACAGAGT
Statistics
Matches: 277, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
158 55 0.20
159 213 0.77
160 9 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGGACTAAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCTCCT
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13229101 original size:26 final size:26
Alignment explanation
Indices: 13229071--13229123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13229061 GTTGGCTTAG
*
13229071 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13229097 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13229123 G
1 G
13229124 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13229222 original size:697 final size:694
Alignment explanation
Indices: 13227870--13229269 Score: 1559
Period size: 697 Copynumber: 2.0 Consensus size: 694
13227860 CGTCTGTTGA
* *
13227870 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATTAGAC
1 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * ** * *
13227935 CAGACCGAGGGTTACGGTAGTAGGATCGACAGCACGTAGGAGGGATCAGGTTGATCCCCGGCTGG
66 CAGACCGACGGTTACGACAGCAGGATCGACAGCACGTAGGAGGGATCAGGCCGATCCCCGACTGA
* * * * **
13228000 TGCATTCTGCCACTTCGGTCGGTTGAACGCCCATAAGCCCGTTTCGTGGGTCTTAGGCATAGGGA
131 CGCATTCTACCACTCCGATCGACTGAACGCCCATAAGCCCGTTTCGTGGGTCTTAGGCATAGGGA
* *
13228065 GTTCATTCCATGTCTAAGCCCCAAGCAGACCAAGGGTTGTGGCAGCAGGACCGACAACACACGGA
196 GTTCATTCCATGTCTAAGCCCCAAGCAGACCAAGAGTTGTGGCAGCAGGACCGACAACACACAGA
* **** * * * ***
13228130 GGGGGATCGGGCCGATCTTTGGCTTGCTCATTATGCCTCTCTGGTTGGCTCAACTCCTACACGCT
261 GAGGGATCGGGCCGATCCCCAGCTTGCGCATCATGCCTCTCCGACCGGCTCAACTCCTACACGCT
* * * *
13228195 CGTTTTGTGGGTTGACTTTGACATACGGAGTTCATTTCCAGCCTAGGATCGAACCAGACCGAAGG
326 CGTTTTATGGGTTGACTTAGACATACAGAGTTCATTTCCAGCCTAAGATCGAACCAGACCGAAGG
* * * ** *
13228260 TTGTGATAGTAGGATCGACAGCACGCAGGGGGGACCTGGTCGGTCCCCAGCTTGCACATTCTGCC
391 TTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCAGACCGGTCCCCAGCTTGCACATTCCGCC
* ** * * *
13228325 TCTTCGGTCGACTGAGCGCCCACATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTC
456 TCTCCGACCGACTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** *
13228390 CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGATCGAACCGAGGGTTGTGACAGCA
521 CATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGATCGAACCAAGGGTTACGACAACA
* * * * * ** *
13228455 GGACCAGTAACAGGATCGATAACATGCAGAGGGGCCTAGGTCAATCCCCGGCTTGTGCATTCTGC
586 GGACCAGTAACAGGATCGACAACACGCAGAGGGGCCGAGGCCAATCCCCGACTTACGCATTCTAC
* * * *
13228520 CTCTCCGATCGACTGAGTGC-CCGCATGCTCATTTTGTGGGTTAG
651 CTCTCCGATCGACTGAG-CCTCCACACGCTCATTTCGTGGGTTAG
* *
13228564 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA-TCCCTAGTCTAAGATCGGA
1 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC-AGTCTAAGATCAGA
** * * * *
13228628 CTGGACTGACGGTTGCGACAGCAGGATCGACAGCATGTA-GAGGGGATCGGGCCGATCCCCGACT
65 CCAGACCGACGGTTACGACAGCAGGATCGACAGCACGTAGGA-GGGATCAGGCCGATCCCCGACT
* * * * *
13228692 TACGTATTCTACCTCTCCGATCGACTGAGCGCCTGCA-CA-CCCGTTTCGTGGGTTGGCTTAGGC
129 GACGCATTCTACCACTCCGATCGACTGAACGCC--CATAAGCCCGTTTCGTGGG-T--CTTAGGC
* * * * *
13228755 ATAGGGAGTTCATTCCATGTCTAAGCGCC-AGCCGGACCAAGAGTTGTGGCAGCGGGACCGATAG
189 ATAGGGAGTTCATTCCATGTCTAAGCCCCAAG-CAGACCAAGAGTTGTGGCAGCAGGACCGACAA
* * *
13228819 CACGCAGAGAGGGATCGGGTCGATCCCCAGCTTGCGCATCATGCCTCTCCGACCGGCTCAGCTCC
253 CACACAGAGAGGGATCGGGCCGATCCCCAGCTTGCGCATCATGCCTCTCCGACCGGCTCAACTCC
* * *
13228884 TGA-ACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCA-TTCCTAGTCTAAGATC-AGAT
318 T-ACACGCTCGTTTTATGGGTTGACTTAGACATACAGAGTTCATTTCC-AGCCTAAGATCGA-AC
* * * *
13228946 CGGA-CTAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGGACCAGACCGGTCCCCAGCT
380 CAGACCGAA-GGTTGCGATAGCAGGATCGACAGCACGCA-GGGGGGACCAGACCGGTCCCCAGCT
* * * *
13229010 TGCGCATTCCGCCTCTCCGACC-AGCTGAGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
443 TGCACATTCCGCCTCTCCGACCGA-CTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCA
* * *
13229074 TACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGAA-TA
507 TACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGA-TCGAACCA
* * * * * * * *
13229138 AGGGTTACGGCAACAGGACCTGTAGCAGGATCGACAGCACGTAGGGGGGATCGA-GCCGATCCCC
571 AGGGTTACGACAACAGGACCAGTAACAGGATCGACAACACGCAGAGGGG-CCGAGGCCAATCCCC
* * * *
13229202 GACTTACGCA-TCTACCTCTCCTATTGGCTGAGCCTCCACACGCTCATTTCGTGGGTTGG
635 GACTTACGCATTCTACCTCTCCGATCGACTGAGCCTCCACACGCTCATTTCGTGGGTTAG
13229261 CTTAGGCAT
1 CTTAGGCAT
13229270 TAAGAGTTCA
Statistics
Matches: 579, Mismatches: 110, Indels: 31
0.80 0.15 0.04
Matches are distributed among these distances:
693 6 0.01
694 138 0.24
695 2 0.00
696 13 0.02
697 234 0.40
698 180 0.31
699 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (694 bp):
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGACGGTTACGACAGCAGGATCGACAGCACGTAGGAGGGATCAGGCCGATCCCCGACTGA
CGCATTCTACCACTCCGATCGACTGAACGCCCATAAGCCCGTTTCGTGGGTCTTAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAAGCAGACCAAGAGTTGTGGCAGCAGGACCGACAACACACAGA
GAGGGATCGGGCCGATCCCCAGCTTGCGCATCATGCCTCTCCGACCGGCTCAACTCCTACACGCT
CGTTTTATGGGTTGACTTAGACATACAGAGTTCATTTCCAGCCTAAGATCGAACCAGACCGAAGG
TTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCAGACCGGTCCCCAGCTTGCACATTCCGCC
TCTCCGACCGACTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGATCGAACCAAGGGTTACGACAACA
GGACCAGTAACAGGATCGACAACACGCAGAGGGGCCGAGGCCAATCCCCGACTTACGCATTCTAC
CTCTCCGATCGACTGAGCCTCCACACGCTCATTTCGTGGGTTAG
Found at i:13229473 original size:26 final size:26
Alignment explanation
Indices: 13229437--13229489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13229427 GTTGACTTAG
* *
13229437 GCATACGGAGTTCGTTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13229463 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13229489 G
1 G
13229490 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13230138 original size:26 final size:26
Alignment explanation
Indices: 13230108--13230160 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13230098 GTTGACTTAG
13230108 GCATATGGAGTTCA-TCCTCAGTCTAA
1 GCATATGGAGTTCATTCC-CAGTCTAA
13230134 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13230160 G
1 G
13230161 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13230436 original size:159 final size:158
Alignment explanation
Indices: 13230190--13230478 Score: 425
Period size: 159 Copynumber: 1.8 Consensus size: 158
13230180 TGCGGCAGCA
* * * * * *
13230190 GGATCGACAGCATGCAGGGGGGATCGAGCCGATTCTCGACTTGCGCATTCTGCCTCTCTGGCCGA
1 GGATCGACAGCACGCAGGGGGGATCGAGCCAATCCCCGACTTGCGCATTCTACCTCCCTGGCCGA
* * * *
13230255 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 CTGAGCGCCCGCACACTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13230320 CCCAATCGGACTGAAGGTTATGGTAGCG
131 CCCAATCGGACTGAAGGTTATGGTAGCG
* * *
13230348 GGATCGGCAGCACGTAGAGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTACCTCCCTGGCCG
1 GGATCGACAGCACGCAG-GGGGGATCGAGCCAATCCCCGACTTGCGCATTCTACCTCCCTGGCCG
** *
13230413 GTTGAGCGCCCGCACACTTGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 ACTGAGCGCCCGCACACTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13230478 C
130 C
13230479 ATACGGAGTT
Statistics
Matches: 114, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
158 14 0.12
159 100 0.88
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GGATCGACAGCACGCAGGGGGGATCGAGCCAATCCCCGACTTGCGCATTCTACCTCCCTGGCCGA
CTGAGCGCCCGCACACTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAATCGGACTGAAGGTTATGGTAGCG
Found at i:13230487 original size:26 final size:26
Alignment explanation
Indices: 13230451--13230503 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13230441 GTTAGCTTAG
13230451 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13230477 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13230503 G
1 G
13230504 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13230600 original size:14 final size:14
Alignment explanation
Indices: 13230565--13230601 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
13230555 TTTTTTCGCT
*
13230565 CGGGGCACCATCAC
1 CGGGGCATCATCAC
13230579 CGGGGCATCATCAC
1 CGGGGCATCATCAC
13230593 CGGGGCATC
1 CGGGGCATC
13230602 GCCCGAGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.19, C:0.38, G:0.32, T:0.11
Consensus pattern (14 bp):
CGGGGCATCATCAC
Found at i:13231224 original size:26 final size:26
Alignment explanation
Indices: 13231188--13231240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13231178 GTTGACTTAG
*
13231188 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13231214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13231240 G
1 G
13231241 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13231921 original size:26 final size:26
Alignment explanation
Indices: 13231885--13231935 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13231875 TGGCTTAGGA
13231885 ATACGAAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
*
13231911 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
13231936 AGTTTCAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:13233281 original size:341 final size:342
Alignment explanation
Indices: 13232581--13233311 Score: 833
Period size: 341 Copynumber: 2.1 Consensus size: 342
13232571 AGCGTCCGCG
* * *
13232581 CGCTCGTTTCATGGGTTGACTTAGGCATAG-GGAGTTCATCCCTAGTCTAAGGATACAAAGTTCA
1 CGCTCATTTTATGGGTTGACTTAGGCAT-GCGGAGTTCATCCCTAGTCTAAGCATACAAAGTTCA
13232645 TTACCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAAGATCGACAGCACGCAAGGGGAC
65 TTACCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAAGATCGACAGCACGCAAGGGGAC
* * * * * **
13232710 CGGGCCGATCCCCGGCTTGGGCATTCTACCTTTCCGGCCGACTGAGCGCCCGCATGCCCATTTCA
130 CAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCATTTCA
*
13232775 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGATTGTGGC
195 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTGTGGC
* * * * * * *
13232840 AGCAGGATCGACAGCACGCAGAGAGGGATCGGGCTGGTCCCCGACTTGTGCATTATGCCTTTTTG
260 AGCAGGACCGACAGCACGCAGAAAGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCTG
** *
13232905 GTCGGCTCAATGCCCGAA
325 ACCGACTCAATGCCCGAA
* * * *
13232923 TGTTCATTTTATGGGTTGACTTAGGCATGCGGAGTTCATCCCCAGTCTAAGCATAC-GAGTTCAT
1 CGCTCATTTTATGGGTTGACTTAGGCATGCGGAGTTCATCCCTAGTCTAAGCATACAAAGTTCAT
* ** ** * * * * *
13232987 TCCCAGTCTAAGATCAGATTGGAGTGAGGGTTGCGACAGCAGGATCGACAGC-CGTAGGGGGGAT
66 TACCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAAGATCGACAGCACGCA-AGGGGAC
* ** * * * * * *
13233051 CAGGCTGATCCTTGGCTTGCGCATTGTGCCTCTCTGACCGGCTGAGCACTCGCACACCCGTTTCA
130 CAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCATTTCA
* * ** *
13233116 TGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTCAGCCCCAGTGGGACCGAGGGTTGTGGC
195 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTGTGGC
** * * *
13233181 AGTGGGACCGACAGCATGCA-AAAGCGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCT
260 AGCAGGACCGACAGCACGCAGAAAG-GGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCT
* * * *
13233245 GACCGATTCAGTGCCTGTA
324 GACCGACTCAATGCCCGAA
* * * *
13233264 CGCTCA-TTTAGTGGGTTGACTGAAGCATACGGAGTTCATTCCTAGTCT
1 CGCTCATTTTA-TGGGTTGACTTAGGCATGCGGAGTTCATCCCTAGTCT
13233312 TAGATCATAC
Statistics
Matches: 320, Mismatches: 65, Indels: 9
0.81 0.16 0.02
Matches are distributed among these distances:
340 10 0.03
341 262 0.82
342 48 0.15
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (342 bp):
CGCTCATTTTATGGGTTGACTTAGGCATGCGGAGTTCATCCCTAGTCTAAGCATACAAAGTTCAT
TACCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAAGATCGACAGCACGCAAGGGGACC
AGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCATTTCAT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTGTGGCA
GCAGGACCGACAGCACGCAGAAAGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCTGA
CCGACTCAATGCCCGAA
Found at i:13233551 original size:12 final size:12
Alignment explanation
Indices: 13233521--13233553 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
13233511 GAGGGTTACG
*
13233521 GTAGCAAGACCA
1 GTAGCAGGACCA
13233533 GTAGCAGGACCA
1 GTAGCAGGACCA
13233545 GTAGCAGGA
1 GTAGCAGGA
13233554 TTGGTAGCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.33, T:0.09
Consensus pattern (12 bp):
GTAGCAGGACCA
Found at i:13233891 original size:26 final size:26
Alignment explanation
Indices: 13233839--13233891 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13233829 GTTGACCTAG
**
13233839 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGACTAA
* *
13233865 GCATACGGAGTTCATTCCTAGACTAA
1 GCATACGGAGTTCATCCCCAGACTAA
13233891 G
1 G
13233892 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGACTAA
Found at i:13234190 original size:159 final size:160
Alignment explanation
Indices: 13233865--13234367 Score: 472
Period size: 159 Copynumber: 3.2 Consensus size: 160
13233855 CCCAGTTTAA
* * * * * * * * * *
13233865 GCATACGGAGTTCATTCC-TAGACTAAG-ATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACTGAAGGTTACGGCAGCAGGATAGA
* * * * * *
13233928 CAGCACGCAGGGT--TACCTG-GCTGATCCCCAGCTTGCGCATTCTGCC-CTTCGGCCGGCTGAG
65 CAGCACGTAGGGTGGGACC-GAGCCGATCCCCAACTTGTGCATTCTGCCTCTTCGGCCGACTGAG
* *
13233989 TGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** *
13234021 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGGTTGAGGGTTGTGGCAGCGGGACTAGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAAGGTTACGGCAGCAGGA-TAGA
* * * *
13234085 C-GCACGTAGAGG-GGGACTGAGCCGATCCCCAACTTGTGCATTATGCCTCTTCGACCGACTCAG
65 CAGCACGTAG-GGTGGGACCGAGCCGATCCCCAACTTGTGCATTCTGCCTCTTCGGCCGACTGAG
* * * *
13234148 CACCCGTACGCTCGTTTCGTGGGTTGACTTAT
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
13234180 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACTGGACTGAAGGTTACGGTAGTAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACTGAAGGTTACGGCAGCAGGATAGA
** * *
13234243 CAGCACGTAGGGTGGGACCGAGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTC-AGCTGAG
65 CAGCACGTAGGGTGGGACCGAGCCGATCCCCAACTTGTGCATTCTGCCTCTTCGGCCGA-CTGAG
13234307 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13234339 GCATACGGAGTTCATTCCATGTTTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13234368 TACGAAGTTC
Statistics
Matches: 276, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
156 49 0.18
157 9 0.03
158 36 0.13
159 180 0.65
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAAGGTTACGGCAGCAGGATAGAC
AGCACGTAGGGTGGGACCGAGCCGATCCCCAACTTGTGCATTCTGCCTCTTCGGCCGACTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13234391 original size:26 final size:26
Alignment explanation
Indices: 13234339--13234391 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13234329 GTTGGCTTAG
* *
13234339 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
13234365 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
13234391 G
1 G
13234392 ATATTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:13235105 original size:26 final size:26
Alignment explanation
Indices: 13235076--13235128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13235066 GTTGACTTAG
13235076 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
13235102 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13235128 G
1 G
13235129 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13235410 original size:159 final size:163
Alignment explanation
Indices: 13235230--13235611 Score: 388
Period size: 159 Copynumber: 2.4 Consensus size: 163
13235220 CGGCTGAGGC
* * * *
13235230 CCCGCACGC-C-CGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CCCGCACGCTCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
* * * * *
13235293 -CCGGATC-GAGGGTT-CTGGCAGCAGGACCGATAGCACGTAGAGAAG-GATCGGGCCAATCCTC
66 ACC-GAACGGAGGGTTGC-GACAGCAGGACCGATAGCACGTAGAGAAGTGACCAGGCCAATCCCC
*
13235354 GGCTTGCACATTATGCCTCTCCGGTCTACTCAACG
129 GGCTTGCACATTATGCCTCTCCGGTCGACTCAACG
* *
13235389 CCCGCACG-T-TCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCA
1 CCCGCACGCTCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA
* * * * ** *
13235450 GATCGAACGGAGGGTTGCGATAGCAGGATCGATAGCACGTAGGGGGGTGACCAGGCCGATCCCCG
65 GACCGAACGGAGGGTTGCGACAGCAGGACCGATAGCACGTAGAGAAGTGACCAGGCCAATCCCCG
** * * * *
13235515 GCTTGGGCATTCTGCCTCTTCGGTCGACTGAGCG
130 GCTTGCACATTATGCCTCTCCGGTCGACTCAACG
* * * *
13235549 CCCGCACGCACTCTCGTTTCGTGGGATGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCA
1 CCCGCACG--CTCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13235612 TACGGAGTTC
Statistics
Matches: 180, Mismatches: 30, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
158 6 0.03
159 78 0.43
160 52 0.29
163 4 0.02
164 39 0.22
165 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (163 bp):
CCCGCACGCTCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
ACCGAACGGAGGGTTGCGACAGCAGGACCGATAGCACGTAGAGAAGTGACCAGGCCAATCCCCGG
CTTGCACATTATGCCTCTCCGGTCGACTCAACG
Found at i:13235620 original size:26 final size:26
Alignment explanation
Indices: 13235583--13235635 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13235573 GATGGCTTAG
*
13235583 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13235609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13235635 G
1 G
13235636 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13235968 original size:26 final size:26
Alignment explanation
Indices: 13235938--13235990 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13235928 GTTGACTTAG
*
13235938 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13235964 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13235990 G
1 G
13235991 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13236148 original size:184 final size:185
Alignment explanation
Indices: 13235812--13236149 Score: 414
Period size: 184 Copynumber: 1.8 Consensus size: 185
13235802 TAAGCCCCAG
* * * * *
13235812 CCGGACTGAGAGTTATGGCAACAGGATCGACAACATGCAGAGGGGGATCAGGTTGATCCTCGACT
1 CCGGACCGAGAGTTACGACAACAGGATCGACAACATGCAGAGGGGGATCAGGCTGATCCCCGACT
* * * * * *
13235877 TGCGCATTATGCCTTTCTGGCCAGTTGAGCTCCTACACGCTCGTTTCATGGGTTGACTTAGGCAT
66 TGAGCATTATGCCTCTCTGGCAAGCTGAGCTCCCACACGCCCGTTTCATGGGTTGACTTAGGCAT
13235942 ACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGA
131 ACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGA
* * * * * *
13235997 CCGGACCGAGGGTTACGACAACAGGATCGATAGCTTGCAG-GGGGGATCGGGCTGATCCCCGGCT
1 CCGGACCGAGAGTTACGACAACAGGATCGACAACATGCAGAGGGGGATCAGGCTGATCCCCGACT
* * * *
13236061 TGAGCATTCTGCCTCTCTGGCAAGCTGAG-TGCCCGCACGCCCGTTTCGTGGGTTGGA-TTCGGC
66 TGAGCATTATGCCTCTCTGGCAAGCTGAGCT-CCCACACGCCCGTTTCATGGGTT-GACTTAGGC
* *
13236124 ATAGGGAGTTCAT-TCCATGTCTAAGC
129 ATACGGAGTTCATCCCCA-GTCTAAGC
13236150 CCCAGTCGAA
Statistics
Matches: 127, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
183 4 0.03
184 88 0.69
185 35 0.28
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (185 bp):
CCGGACCGAGAGTTACGACAACAGGATCGACAACATGCAGAGGGGGATCAGGCTGATCCCCGACT
TGAGCATTATGCCTCTCTGGCAAGCTGAGCTCCCACACGCCCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGA
Found at i:13236266 original size:159 final size:158
Alignment explanation
Indices: 13236033--13236553 Score: 491
Period size: 159 Copynumber: 3.3 Consensus size: 158
13236023 TCGATAGCTT
* * * * * ** *
13236033 GCAG-GGGGGATCGGGCTGATCCCCGGCTTGAGCATTCTGCCTCTCTGGCAAGCTGAGTGCCCGC
1 GCAGAGGGGGACCGGGCTGATACCCGGCTTGCGCATTATGCCTCTTTGGC-AGCTGAGCACCTGC
* * **
13236097 ACGCCCGTTTCGTGGGTTGGATTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAAAT
65 ACTCCCGTTTCGTGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACC
* *
13236162 GAGGGTTGTGGCAGTGGGACCGACAGCAC
130 GAGGGTTATGGCAGCGGGACCGACAGCAC
* * * **
13236191 ACAGAGGGGGACCGGGCTGATACCTGGCTTGTGCATTATGCCTCTTTGGCTAGCACAGCACCTGC
1 GCAGAGGGGGACCGGGCTGATACCCGGCTTGCGCATTATGCCTCTTTGGC-AGCTGAGCACCTGC
* * * * * ** * * * *
13236256 ACTCTCGTTTCATGGGTT-GACTTATGCATACGAAGTTCATTCACA-GTCTAAGATCGAATTGGA
65 ACTCCCGTTTCGTGGGTTGGA-TTAGGCATAGGGAGTTCATTC-CATGTCTAAGCCCCAGTCGAA
* ** * *
13236319 CCGAGGGTTAAGATAGCAGGATCGACAGCAC
128 CCGAGGGTTATGGCAGCGGGACCGACAGCAC
* * * * *
13236350 GCAG-GGGGGACCGAG-TCGA-ACCCCGGCTTGCGCATTCTGCCTCTCTTGTCGGCTGAGCAGCT
1 GCAGAGGGGGACCGGGCT-GATA-CCCGGCTTGCGCATTATGCCTCT-TTGGCAGCTGAGCACCT
* * * *
13236412 GCACTCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAG
63 GCACTCCCGTTTCGTGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA-
13236476 ACCGAGGGTTATGGCAGCGGGACCTG-CAGCAC
127 ACCGAGGGTTATGGCAGCGGGACC-GACAGCAC
* *
13236508 GCAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTT
1 GCAGAGGGGGACCGGGCTGATACCCGGCTTGCGCATTATGCCTCTT
13236554 CGACCGGCTC
Statistics
Matches: 281, Mismatches: 69, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 118 0.42
159 156 0.56
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCAGAGGGGGACCGGGCTGATACCCGGCTTGCGCATTATGCCTCTTTGGCAGCTGAGCACCTGCA
CTCCCGTTTCGTGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCG
AGGGTTATGGCAGCGGGACCGACAGCAC
Found at i:13236443 original size:158 final size:156
Alignment explanation
Indices: 13236268--13236782 Score: 396
Period size: 158 Copynumber: 3.2 Consensus size: 156
13236258 TCTCGTTTCA
*
13236268 TGGGTTGACTTATGCATACGAAGTTCATTCACAGTCTAAGATCGAATTGGACCGAGGGTTAAGAT
1 TGGGTTGACTTATGCATACGAAGTTCATTC-CAGTCTAAGATCAAATTGGACCGAGGGTTAAG-T
* *
13236333 AGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGAACCCCGGCTTGCGCATTCTGCCTCTCTTG
64 AGCAGGATCGACAGCACGCAGGGGGGACCG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCTCG
* * * *
13236398 -TCGGCTGAGCAG-CTGCACTCCCATTTTG
128 ACCGGCTCAGC-GCCCGCACGCCCATTTTG
* * * * ** * ** * * *
13236426 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTATGGC
1 TGGGTTGACTTATGCATACGAAGTTCATTCCA-GTCTAAGATCAAATTGGACCGAGGGTTA-AGT
* * * * *
13236491 AGCGGGACCTG-CAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCT-T
64 AGCAGGATC-GACAGCACGCAG-GGGGGACCGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCT
* **
13236554 CGACCGGCTCAGCGCCCGTACGCTTATTTTG
126 CGACCGGCTCAGCGCCCGCACGCCCATTTTG
* * * *
13236585 TGGGTTGACTTATGCATACGAAATTCATTCCCAGTCTATGATCAAATGGGACCGAGGGTTGCAGT
1 TGGGTTGACTTATGCATACGAAGTTCATT-CCAGTCTAAGATCAAATTGGACCGAGGGTT-AAGT
* * ** * * * * *
13236650 AGCAAGATCGATAGCACATAGGGGGGATCGGGTCGATCCCTGGCCTGTGCATTCTACCTCTCT-G
64 AGCAGGATCGACAGCACGCAGGGGGGA-CCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTCG
* * * * * * * * *
13236714 GCCGGTTGAGCACCCGTATGCTCGTTTCG
128 ACCGGCTCAGCGCCCGCACGCCCATTTTG
*
13236743 TGGGTTGGCTT-TCGCATAC-AGAGTTCATTCCATGTCTAAG
1 TGGGTTGACTTAT-GCATACGA-AGTTCATTCCA-GTCTAAG
13236783 CATACGGGTT
Statistics
Matches: 276, Mismatches: 66, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
157 7 0.03
158 150 0.54
159 116 0.42
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (156 bp):
TGGGTTGACTTATGCATACGAAGTTCATTCCAGTCTAAGATCAAATTGGACCGAGGGTTAAGTAG
CAGGATCGACAGCACGCAGGGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTCGACC
GGCTCAGCGCCCGCACGCCCATTTTG
Found at i:13236547 original size:317 final size:315
Alignment explanation
Indices: 13235964--13236783 Score: 878
Period size: 317 Copynumber: 2.6 Consensus size: 315
13235954 CCCAGTCTAA
* * * * *
13235964 GCATAC-AGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGACAACAGGATCGAT
1 GCATACGA-AGTTCATTCC-AGTCTAAGATCGAATCGGACCGAGGGTTAAGATAGCAGGATCGAT
** * * ** *
13236028 AGCTTGCAGGGGGGATCGGGCTGATCCCCGGCTTGAGCATTCTGCCTCTCTGGCAAGCTGAG-TG
64 AGCACGCAGGGGGGATCGGTC-GATCCCCGGCTTGAGCATTCTGCCTCTCTTGCCGGCTGAGCAG
* * * *
13236092 CCCGCACGCCCGTTTCGTGGGTTGGATTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
128 -CCGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTA
* * * *
13236157 GAAATGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCGGGCTGATACCTGGCTTG
192 GAAACGAGGGTTATGGCAGCGGGACCGACAGCACACAGAGGGGGACCGGGCTGATACCCGGCTTG
* * * * * * *
13236222 TGCATTATGCCTCTTTGGCTAGCACAGCACCTGCACTCTCGTTTCATGGGTTGACTTAT
257 CGCATTATGCCTCTTCGACCAGCACAGCACCCGCACGCTCATTTCATGGGTTGACTTAT
* *
13236281 GCATACGAAGTTCATTCACAGTCTAAGATCGAATTGGACCGAGGGTTAAGATAGCAGGATCGACA
1 GCATACGAAGTTCATTC-CAGTCTAAGATCGAATCGGACCGAGGGTTAAGATAGCAGGATCGATA
* * * *
13236346 GCACGCAGGGGGGACCGAGTCGAACCCCGGCTTGCGCATTCTGCCTCTCTTGTCGGCTGAGCAGC
65 GCACGCAGGGGGGATCG-GTCGATCCCCGGCTTGAGCATTCTGCCTCTCTTGCCGGCTGAGCAGC
* * *
13236411 TGCACTCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
129 CGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TAG
* * * *
13236476 -ACCGAGGGTTATGGCAGCGGGACCTG-CAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCTTG
193 AAACGAGGGTTATGGCAGCGGGACC-GACAGCACACAGAGGGGGACCGGGCTGATACCCGGCTTG
* * * * * **
13236539 CGCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACGCTTATTTTGTGGGTTGACTTAT
257 CGCATTATGCCTCTTCGACCAGCACAGCACCCGCACGCTCATTTCATGGGTTGACTTAT
* * * * * *
13236598 GCATACGAAATTCATTCCCAGTCTATGATCAAATGGGACCGAGGGTTGCAG-TAGCAAGATCGAT
1 GCATACGAAGTTCATT-CCAGTCTAAGATCGAATCGGACCGAGGGTT-AAGATAGCAGGATCGAT
** * * * * * * *
13236662 AGCACATAGGGGGGATCGGGTCGATCCCTGGCCTGTGCATTCTACCTCTCTGGCCGGTTGAGCAC
64 AGCACGCAGGGGGGATC-GGTCGATCCCCGGCTTGAGCATTCTGCCTCTCTTGCCGGCTGAGCAG
* * ** **
13236727 CCGTA-TGCTCGTTTCGTGGGTTGGCTTTCGCATACAGAGTTCATTCCATGTCTAAGC
128 CCGCACT-CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13236784 ATACGGGTTC
Statistics
Matches: 418, Mismatches: 75, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
316 1 0.00
317 405 0.97
318 12 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (315 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCGAATCGGACCGAGGGTTAAGATAGCAGGATCGATAG
CACGCAGGGGGGATCGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCTTGCCGGCTGAGCAGCCG
CACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTAGAAA
CGAGGGTTATGGCAGCGGGACCGACAGCACACAGAGGGGGACCGGGCTGATACCCGGCTTGCGCA
TTATGCCTCTTCGACCAGCACAGCACCCGCACGCTCATTTCATGGGTTGACTTAT
Found at i:13236622 original size:159 final size:157
Alignment explanation
Indices: 13236033--13236615 Score: 469
Period size: 159 Copynumber: 3.7 Consensus size: 157
13236023 TCGATAGCTT
* * * * ** * * *
13236033 GCAG-GGGGGATCGGGCTGATCCCCGGCTTGAGCATTCTGCCTCTCTGGCAAGCTGAGTGCCCGC
1 GCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT-TTGCCGGCTCAGCGCCTGC
* * * * ** * * * *
13236097 ACGCCCGTTTCGTGGGTTGGA-TTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAAA
65 ACTCTCATTTTGTGGGTT-GACTTATGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTAG-AC
* * *
13236161 TGAGGGTTGTGGCAGTGGGACCGACAGCAC
128 CGAGGGTTATGGCAGCGGGACCGACAGCAC
* * * * ** * *
13236191 ACAGAGGGGGACCGGGCTGATACCTGGCTTGTGCATTATGCCTCTTTGGCTAGCACAGCACCTGC
1 GCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTT-GCCGGCTCAGCGCCTGC
* ** * ** * *
13236256 ACTCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCACA-GTCTAAGATCGAATTGGAC
65 ACTCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTC-CATGTCTAAG-CCCCAGTAGAC
* ** * *
13236320 CGAGGGTTAAGATAGCAGGATCGACAGCAC
128 CGAGGGTTATGGCAGCGGGACCGACAGCAC
* * * * *
13236350 GCAG-GGGGGACCGAG-TCGAACCCCGGCTTGCGCATTCTGCCTCTCTTGTCGGCTGAGCAG-CT
1 GCAGAGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCT-TTGCCGGCTCAGC-GCCT
* * * * *
13236412 GCACTCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
63 GCACTCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCATGTCTAAGCCCCAG-TAGA
13236477 CCGAGGGTTATGGCAGCGGGACCTG-CAGCAC
127 CCGAGGGTTATGGCAGCGGGACC-GACAGCAC
* * * *
13236508 GCAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGT
1 GCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTTG-CCGGCTCAGCGCCTGC
* * *
13236573 ACGCTTATTTTGTGGGTTGACTTATGCATACGAAATTCATTCC
65 ACTCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCC
13236616 CAGTCTATGA
Statistics
Matches: 328, Mismatches: 82, Indels: 29
0.75 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 123 0.38
159 193 0.59
160 7 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTTGCCGGCTCAGCGCCTGCA
CTCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTAGACCGA
GGGTTATGGCAGCGGGACCGACAGCAC
Found at i:13236666 original size:159 final size:156
Alignment explanation
Indices: 13236182--13236666 Score: 431
Period size: 159 Copynumber: 3.1 Consensus size: 156
13236172 GCAGTGGGAC
* * * * ** *
13236182 CGACAGCACACAGAGGGGGACCGGGCTGATACCTGGCTTGTGCATTATGCCTCTTTGGCTAGCAC
1 CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTT-GCCGGCTC
* * ** *
13236247 AGCACCTGCACTCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCACAGTCTAAGATCG
65 AGCGCCTGCACTCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATC-
*
13236312 AATTGGACCGAGGGTTAAGATAGCAGGAT
129 AAATGGACCGAGGGTTAAG-TAGCAGGAT
* * * *
13236341 CGACAGCACGCAG-GGGGGACCGAG-TCGAACCCCGGCTTGCGCATTCTGCCTCTCTTGTCGGCT
1 CGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCT-TTGCCGGCT
* * * * * *
13236404 GAGCAG-CTGCACTCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGC
64 CAGC-GCCTGCACTCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-
** ** * * * * *
13236467 CCCAGCTAGACCGAGGGTTATGGCAGCGGGAC
126 ATCAAATGGACCGAGGGTTA-AGTAGCAGGAT
* *
13236499 CTG-CAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCT
1 C-GACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTTG-CCGGCT
* * * * * *
13236563 CAGCGCCCGTACGCTTATTTTGTGGGTTGACTTATGCATACGAAATTCATTCCCAGTCTATGATC
64 CAGCGCCTGCACTCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATC
* *
13236628 AAATGGGACCGAGGGTTGCAGTAGCAAGAT
129 AAAT-GGACCGAGGGTT-AAGTAGCAGGAT
*
13236658 CGATAGCAC
1 CGACAGCAC
13236667 ATAGGGGGGA
Statistics
Matches: 250, Mismatches: 61, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
157 3 0.01
158 120 0.48
159 123 0.49
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTTGCCGGCTCA
GCGCCTGCACTCTCATTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAA
ATGGACCGAGGGTTAAGTAGCAGGAT
Found at i:13236795 original size:25 final size:26
Alignment explanation
Indices: 13236756--13236807 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
13236746 GTTGGCTTTC
13236756 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13236782 GCATAC-GGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13236807 G
1 G
13236808 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13237506 original size:26 final size:26
Alignment explanation
Indices: 13237476--13237528 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13237466 GTTGGCTTAG
13237476 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13237502 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13237528 G
1 G
13237529 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13242039 original size:18 final size:18
Alignment explanation
Indices: 13242016--13242060 Score: 74
Period size: 18 Copynumber: 2.5 Consensus size: 18
13242006 GTTTGGTAGA
13242016 CTTGAACT-AGTTTAGAGG
1 CTTGAACTCA-TTTAGAGG
13242034 CTTGAACTCATTTAGAGG
1 CTTGAACTCATTTAGAGG
13242052 CTTGAACTC
1 CTTGAACTC
13242061 TATCAAGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 25 0.96
19 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (18 bp):
CTTGAACTCATTTAGAGG
Found at i:13244165 original size:26 final size:26
Alignment explanation
Indices: 13244129--13244181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13244119 GTTGACTTAG
*
13244129 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13244155 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13244181 G
1 G
13244182 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13244696 original size:26 final size:26
Alignment explanation
Indices: 13244667--13244719 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13244657 GTTGGCTTAG
*
13244667 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13244693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13244719 G
1 G
13244720 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13244900 original size:26 final size:26
Alignment explanation
Indices: 13244864--13244916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13244854 GTAGGCTTGG
*
13244864 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13244890 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13244916 G
1 G
13244917 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13245104 original size:196 final size:196
Alignment explanation
Indices: 13244408--13245283 Score: 909
Period size: 196 Copynumber: 4.5 Consensus size: 196
13244398 TCGATCCCTT
* * * * *
13244408 GCTTGCGCATTATGCCTCTCCGGTTGGCTCAGTGCCCGAACGCTCGTTTCATGGTTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * *
13244473 CATACAGAGTTCATTCCATGTCTAAGTATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGACT
66 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACC
* * ** * * * * ** **
13244538 GAGGGTTGCAACAATAGGACCAGCAGTAGGATCGATAGCACGTA-GGGGGATCGGGCCGGTCCTT
131 AAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCAATCCCC
13244602 A
196 A
** * * * * *
13244603 GCTTATGCATTTTGCCTCTTC-GACTGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
1 GCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
13244667 GCATACAGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
65 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGAC
** * * * * * *
13244732 CAAGGGTTGCGGTAGCAGGACCAACAGCCGGATCAACAGCACGTAGGGAGGGATCGGGTCAATCC
130 CAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGG-GGGATCGAGCCAATCC
13244797 CCA
194 CCA
* * * * * * * * * *
13244800 GCTTGCGCGTTCTACCTCTTCGATCAG-TCGAGTGCCCGTACACTCGTTTCGTGGGTAGGCTTGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGCT-GAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
13244864 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATC-GGA
65 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGGA
* * * * *
13244928 CCGAGGGTTGCGACAGTAGGACCAGTAGCAGGATTGACAGCACGCAGGGGGGACCGAGCCAATCC
129 CCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCAATCC
* *
13244993 TCG
194 CCA
* ** *
13244996 GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACTCTCGTTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * *
13245061 CATACGGAGTTCATTCCATGTCTAGGCATACGGAGCTCATTCCCAGTCTAAAATCGGACAGGACC
66 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACC
* * * * * * *
13245126 AAGGGTTACTG-CAGCATGACCAGCAGTAGGATCGACAACACTCATGGGGGATC-AGACCGATCC
131 AAGGGTTGC-GACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAG-CCAATCC
*
13245189 CCG
194 CCA
* * * * *
13245192 GCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCTCGCACGCTCATTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
13245257 CATACGAAGTTCATTCCATGTCCAAGC
66 CATACGGAGTTCATTCCATGTCTAAGC
13245284 CCTAGTCGGA
Statistics
Matches: 561, Mismatches: 110, Indels: 19
0.81 0.16 0.03
Matches are distributed among these distances:
194 1 0.00
195 146 0.26
196 254 0.45
197 158 0.28
198 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (196 bp):
GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACC
AAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCAATCCCC
A
Found at i:13245198 original size:392 final size:392
Alignment explanation
Indices: 13244408--13245283 Score: 1044
Period size: 392 Copynumber: 2.2 Consensus size: 392
13244398 TCGATCCCTT
* * * * * * * *
13244408 GCTTGCGCATTATGCCTCTCCGGTTGGCTCAGTGCCCGAACGCTCGTTTCATGGTTTGGCTTAGG
1 GCTTGCGCATTCTACCTCTCCGATCGACTGAGTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGG
* * * *
13244473 CATACAGAGTTCATTCCATGTCTAAGTATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGACT
66 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
* * * * * ** *
13244538 GAGGGTTGCAACAATAGGACCAGCAGTAGGATCGATAGCACGTAGGGGGATCGGGCCGGTCCTTA
131 GAGGGTTGCAACAATAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACCGAGCCAATCCTCA
* * * *
13244603 GCTTATGCATTTTGCCTCTTCGACTGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGG
196 GCTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGG
* * * * *
13244668 CATACAGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC
261 CATACAGAGTTCATTCCATGTCTAAGCATACGGAGCTCATTCCCAGTCTAAAATCAGACAGGACC
* * * * * **
13244733 AAGGGTTGCGGTAGCAGGACCAACAGCCGGATCAACAGCACGTAGGGAGGGATCGGGTCAATCCC
326 AAGGGTTACGGCAGCAGGACCAACAGCAGGATCAACAACACGTAGGGAGGGATCAGACCAATCCC
13244798 CA
391 CA
* * * * * * *
13244800 GCTTGCGCGTTCTACCTCTTCGATC-AGTCGAGTGCCCGTACACTCGTTTCGTGGGTAGGCTTGG
1 GCTTGCGCATTCTACCTCTCCGATCGACT-GAGTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
13244864 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCGGA
65 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-GGA
* * * *
13244928 CCGAGGGTTGCGACAGTAGGACCAGTAGCAGGATTGACAGCACGCAGGGGGGACCGAGCCAATCC
129 CCGAGGGTTGCAACAATAGGACCAGCAGCAGGATCGACAGCACGCA-GGGGGACCGAGCCAATCC
* * * *
13244993 TCGGCTTGCGCATTCTGCCTCTCCG-GTCGGTTGAGCACCCGCACT-CTCGTTTCATGGGTTGGC
193 TCAGCTTACGCATTCTGCCTCTCCGACT-GGCTGAGCACCCGCA-TGCTCGTTTCATGGGTTGGC
* * *
13245056 TTAGGCATACGGAGTTCATTCCATGTCTAGGCATACGGAGCTCATTCCCAGTCTAAAATCGGACA
256 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGCTCATTCCCAGTCTAAAATCAGACA
* * * * * *
13245121 GGACCAAGGGTTACTGCAGCATGACCAGCAGTAGGATCGACAACAC-TCATGG-GGGATCAGACC
321 GGACCAAGGGTTACGGCAGCAGGACCAACAGCAGGATCAACAACACGT-AGGGAGGGATCAGACC
* *
13245184 GATCCCCG
385 AATCCCCA
* * * *
13245192 GCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCTCGCACGCTCATTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTACCTCTCCGATCGACTGAGTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGG
* *
13245257 CATACGAAGTTCATTCCATGTCCAAGC
66 CATACGGAGTTCATTCCATGTCTAAGC
13245284 CCTAGTCGGA
Statistics
Matches: 403, Mismatches: 74, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
391 2 0.00
392 237 0.59
393 163 0.40
394 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (392 bp):
GCTTGCGCATTCTACCTCTCCGATCGACTGAGTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
GAGGGTTGCAACAATAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACCGAGCCAATCCTCA
GCTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGG
CATACAGAGTTCATTCCATGTCTAAGCATACGGAGCTCATTCCCAGTCTAAAATCAGACAGGACC
AAGGGTTACGGCAGCAGGACCAACAGCAGGATCAACAACACGTAGGGAGGGATCAGACCAATCCC
CA
Found at i:13245477 original size:26 final size:26
Alignment explanation
Indices: 13245441--13245491 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13245431 TGACTTAGGC
13245441 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* * *
13245467 ATACGGAGTTCATTCCCTGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
13245492 ATTAGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:13245975 original size:26 final size:26
Alignment explanation
Indices: 13245939--13245991 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13245929 GTTGGCTTAG
13245939 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13245965 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13245991 G
1 G
13245992 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13246110 original size:184 final size:184
Alignment explanation
Indices: 13245780--13246150 Score: 439
Period size: 184 Copynumber: 2.0 Consensus size: 184
13245770 GGGTTGGCTT
* *
13245780 AGCATACAGAGTTCATTCCCACTCTAAGATCGGACCAGGCCAAGGGTTGCAACTACAAGATCGAG
1 AGCATACAGAGTTCATTCCCACTCTAAGATCGGACCAGGCCAAGGGTTGCAACTACAAGATCAAC
* * *
13245845 AGCACGCAGGGGGGACCAGGCCGATCCTTGGCTTGCACATTCTACCTTTCCGATTCGCTGAGCGT
66 AGCACGCAGGGGGGACCAGGCCGATCCTTCGATTGCACATTCTACCTTTCCGAATCGCTGAGCGT
* * *
13245910 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
131 CCGCACGCTCATTTCGTGGGTTAGCTTAGCCATACAGAGTTCATTCCATGTCTA
* * * * ** * *
13245964 AGCATACGGAGTTTATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTGCAGC-AGCAGGATCA
1 AGCATACAGAGTTCATTCCCACTCTAAGATCGGACCAGG-CCAAGGGTTGCAACTA-CAAGATCA
* * ** *
13246027 ACAGCACGTAGGGGGGATCAGGCCGATCC-TCGATTGCGTATTCTGCCTCTT-C-AATCAGCTGA
64 ACAGCACGCAGGGGGGACCAGGCCGATCCTTCGATTGCACATTCTACCT-TTCCGAATC-GCTGA
* *
13246089 GCG-CTCGTACGTTCGATTTCGTGGGTTAGCTTAGCCATACAGAGTTCATTCCATGTCTA
127 GCGTC-CGCACGCTC-ATTTCGTGGGTTAGCTTAGCCATACAGAGTTCATTCCATGTCTA
13246148 AGC
1 AGC
13246151 CCCAACCGAA
Statistics
Matches: 158, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
182 4 0.03
183 34 0.22
184 120 0.76
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
AGCATACAGAGTTCATTCCCACTCTAAGATCGGACCAGGCCAAGGGTTGCAACTACAAGATCAAC
AGCACGCAGGGGGGACCAGGCCGATCCTTCGATTGCACATTCTACCTTTCCGAATCGCTGAGCGT
CCGCACGCTCATTTCGTGGGTTAGCTTAGCCATACAGAGTTCATTCCATGTCTA
Found at i:13246826 original size:26 final size:26
Alignment explanation
Indices: 13246797--13246849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13246787 GTTGGCTTAG
*
13246797 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13246823 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13246849 G
1 G
13246850 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13247039 original size:26 final size:26
Alignment explanation
Indices: 13246993--13247045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13246983 GTTGACTTAG
*
13246993 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
**
13247019 GCATACGGAGTTCATTTCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13247045 G
1 G
13247046 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13247047 original size:196 final size:185
Alignment explanation
Indices: 13246638--13247204 Score: 565
Period size: 196 Copynumber: 3.0 Consensus size: 185
13246628 GTTGACTTAG
* * * * * * * *
13246638 GCATACAGAGTTCATTCCTAGTCTAAGATTGGACCAGACT-GAAGGTTGTGAC--TGCAGGATCG
1 GCATACAGAGTTCATTCCCAGCCTAAGATCGAATC-GAATCGAGGGTTGCGACAGTGCAGGATCG
* * * *
13246700 ATACCACGCATGGGGGGAACGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGA-CAGGCTGA
65 ATAGCACGCA-GGGGGGAACGGG-CGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGA
** * * *
13246764 GCGTTCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
13246823 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCGAGGGTTGTGGCAGTAGGACCAGT
1 GCATACAGAGTTCATTCCCAGCCTAAGATCGAATC-GAATCGAGGG-T-T-GC-----GA-CAGT
* *
13246887 AGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGA
56 -GCAGGATCGATAGCACGCAGGGGGGAACGGG-CGATCCCCGACTTGCGCATTCTGCCTCTCCGA
* * * * *
13246952 TCGGTTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
119 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
13247016 TAA
183 TAA
* * *
13247019 GCATACGGAGTTCATTTCCAGCCTAAGATCGAATCGAATCGAGGGTTGCGACAGT--AGGATCGG
1 GCATACAGAGTTCATTCCCAGCCTAAGATCGAATCGAATCGAGGGTTGCGACAGTGCAGGATCGA
* * * * *
13247082 TAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTACGCATTCTACCTCTCCGGTCGACTGAGCG
66 TAGCACGCAGGGGGGAACGGGC-GATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * * *
13247147 CCCCCACGCCCGTTTCGTGGGGTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13247203 GC
1 GC
13247205 CCCAGTCAGA
Statistics
Matches: 319, Mismatches: 45, Indels: 37
0.80 0.11 0.09
Matches are distributed among these distances:
183 4 0.01
184 112 0.35
185 35 0.11
186 1 0.00
187 5 0.02
188 3 0.01
193 4 0.01
194 2 0.01
195 1 0.00
196 129 0.40
197 23 0.07
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGCCTAAGATCGAATCGAATCGAGGGTTGCGACAGTGCAGGATCGA
TAGCACGCAGGGGGGAACGGGCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13253370 original size:158 final size:158
Alignment explanation
Indices: 13253080--13253380 Score: 344
Period size: 158 Copynumber: 1.9 Consensus size: 158
13253070 AGGGTTGCGA
* * * * *
13253080 CAGCACGCGGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGTG
1 CAGCACGCGAGGGGGACCAGGCCCATCCCCGACTTGCGCATTATGCCCCTCCGGTCGGCTAAGCG
* * ** * *
13253145 CCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCACACGCCTGTTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCATATCTAAGCACCAGCC
13253210 AGA-TCGAGGGTTGTGGTAGCGGGATAGG
131 AGACT-GAGGGTTGTGGTAGCGGGATAGG
* * * *
13253238 CAGCACGCAGAGGGGGACCGGGCCCATCCTCGACTTGTGCATTATGCCCCTCCGGTC-GCTCAGC
1 CAGCACGC-GAGGGGGACCAGGCCCATCCCCGACTTGCGCATTATGCCCCTCCGGTCGGCTAAGC
* * *
13253302 GCCCGA-ACG-TTCGTTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCCA-ATCTAAG-ATC
65 GCCC-ACACGCCT-GTTTCATGGGTTGACCTAGGCATACAGAGTTCATT-CCATATCTAAGCACC
13253363 AGACCAGACTGAGGGTTG
127 AG-CCAGACTGAGGGTTG
13253381 CGACAGCAGG
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
157 4 0.03
158 69 0.58
159 46 0.39
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
CAGCACGCGAGGGGGACCAGGCCCATCCCCGACTTGCGCATTATGCCCCTCCGGTCGGCTAAGCG
CCCACACGCCTGTTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCATATCTAAGCACCAGCC
AGACTGAGGGTTGTGGTAGCGGGATAGG
Found at i:13254072 original size:13 final size:12
Alignment explanation
Indices: 13254037--13254068 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
13254027 GTGCTGGTAC
*
13254037 TTGGCCCTTATA
1 TTGGCCCCTATA
13254049 TTGGCCCCTATA
1 TTGGCCCCTATA
13254061 TTGGCCCC
1 TTGGCCCC
13254069 CTATGCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:13254574 original size:26 final size:26
Alignment explanation
Indices: 13254545--13254597 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13254535 GTTGACTTAG
*
13254545 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13254571 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13254597 G
1 G
13254598 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13254875 original size:159 final size:158
Alignment explanation
Indices: 13254711--13255074 Score: 396
Period size: 159 Copynumber: 2.3 Consensus size: 158
13254701 TGCACACCCG
**
13254711 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCA-AGCTGG-ACCGAGGG
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGA-C-GGAACCGAGGG
*** * * *
13254774 TTGTGGCAGCGGGA-CTGACAGCACGTAGAGGGGGATCGGG-TCGATCCCCGATTTACGCATTAT
64 TCACGGCAGCAGGATC-GACAGCACGTAG-GGGGGACCGGGCT-GATCCCCGACTTACGCATTAT
* *
13254837 GCCTCTCCGATCGGCTCAACACCCGCACGCTCA
126 ACCTCTCCGATCGACTCAACACCCGCACGCTCA
* **
13254870 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCCA-GTCTAAGATCAGACGGAACCGAGGG
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATT--CCATGTCTAAGCCCAGACGGAACCGAGGG
* * * * ** * *
13254934 TCACGGTAGCAGGATCGATAGCATGTAGGGGGGACCGGGCTGGTCCCCGACTTGTGCATTCTATC
64 TCACGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCCGACTTACGCATTATACC
* * *
13254999 TCTCCGATCGACTGAGCACCCGCACTCTCA
129 TCTCCGATCGACTCAACACCCGCACGCTCA
* *
13255029 TTTTATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
13255075 ATACGGAGTT
Statistics
Matches: 170, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.02
158 7 0.04
159 117 0.69
160 38 0.22
161 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGACGGAACCGAGGGTC
ACGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCCGACTTACGCATTATACCTC
TCCGATCGACTCAACACCCGCACGCTCA
Found at i:13255205 original size:184 final size:185
Alignment explanation
Indices: 13254888--13255256 Score: 467
Period size: 184 Copynumber: 2.0 Consensus size: 185
13254878 GTTGACTTAG
* *
13254888 GCATACAGAGTTCATTCCCCAGTCTAAGATCAGACGGAACCGAGGGTCACGGTAGCAGGATCGAT
1 GCATACAGAGTTCATTCCCCAGTCTAAGATCAGACGGAACCGAGGGTCACGATAGCAGGATCGAC
* * * *
13254953 AGCATGTAGGGGGGACCGGGCTGGTCCCCGACTTGTGCATTCTATCTCTCCGATCGACTGAGCAC
66 AGCACGTAGGGGGGACCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGAGCGACTGAGCAC
* * *
13255018 CCGCACTCTCATTTTATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
131 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * ** *
13255073 GCATACGGAGTTCATT-CCTAGTCTAAGATCGGACTGG-ATCGAGGGTTGCGATAGCAGGATCGG
1 GCATACAGAGTTCATTCCCCAGTCTAAGATCAGAC-GGAACCGAGGGTCACGATAGCAGGATCGA
* * * * **
13255136 CAGCACGTTGAGGGGGACCGGG-TCGATCCCCGGCTTGTGCATTCTGCCTCTCTG-GCGGTTGAG
65 CAGCACGTAG-GGGGGACCGGGCT-GATCCCCGACTTGTGCATTCTACCTCTCCGAGCGACTGAG
* *
13255199 CACCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
128 CACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
13255257 ACCCCAGCTG
Statistics
Matches: 157, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
184 104 0.66
185 53 0.34
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCCAGTCTAAGATCAGACGGAACCGAGGGTCACGATAGCAGGATCGAC
AGCACGTAGGGGGGACCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGAGCGACTGAGCAC
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:13255426 original size:26 final size:26
Alignment explanation
Indices: 13255390--13255442 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13255380 GTTGACTTAG
13255390 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13255416 GCATACGGAGTTTATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13255442 G
1 G
13255443 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13255705 original size:343 final size:342
Alignment explanation
Indices: 13254729--13255744 Score: 918
Period size: 343 Copynumber: 3.0 Consensus size: 342
13254719 GTTGGCTTAG
* ** * * * * * *
13254729 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAAGCTGGACCGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATC-GG
** * * * ** * * * *
13254792 CAGCACGTAGAGGGGGATCGGGTCGATCCCCGATTTACGCATTATGCCTCTCCGA-TCGGCTCAA
64 CAGCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAG
* ** **
13254856 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCCAGTCTAAGATCAG
128 CACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATA-TCTAAGCCCAG
*** * * *
13254921 ACGGAACCGAGGGTCACGGTAGCAGGATCGATAGCATGTAG-GGGGGACCGGGCTGGTCCCCGAC
192 -CGG-ACCGAGGGTTGTGGTAGCAGGATCGATAGCATGCAGAGGGGGACCGGGCTGATCCCTGAC
* ** ** * ** *
13254985 TTGTGCATTCTATCTCTCCGATCGACTGAGCACCCGCACTCTCATTTTATGGGTTGGCTTAGGCA
255 TTGTGCATTATGCCTCTCCGATCGACTGAGTGCCCACACTCTCATTCCATGGGTTGACTTAGGCA
* *
13255050 TATAGAGTTCATTCCATGTCTAA
320 TACAGAGTTCATCCCATGTCTAA
* ** * * *
13255073 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGATCGAGGGTTGCGATAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
*** * * * * * *
13255138 GCACGTTGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGC-GGTTGAGCAC
66 GCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCAC
* * * *
13255202 CCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGCTG
131 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCT-AAGCCCAGC-G
* * ** * * * * * *
13255267 GACCGATGGTTGTGGCAGCAGGATCGGCAGCACGCACAAGGGGATCGAGATGATCCCTGACTTGT
194 GACCGAGGGTTGTGGTAGCAGGATCGATAGCATGCAGAGGGGGACCGGGCTGATCCCTGACTTGT
* * ** *
13255332 GTATTATGCCTCTCTGGCCGACTGAGTGCCCACA-TGCTCATTCCGTGGGTTGACTTAGGCATAC
259 GCATTATGCCTCTCCGATCGACTGAGTGCCCACACT-CTCATTCCATGGGTTGACTTAGGCATAC
*
13255396 GGAGTTCATCCCCA-GTCTAA
323 AGAGTTCAT-CCCATGTCTAA
* * * *
13255416 GCATACGGAGTTTATTCCCAGTTTAAGATCAAACCGGACCGAGGGTTGGGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * *
13255481 GCACACAGA-GGGGACCAGGCCGATCTCTGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
66 GCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCAC
* * ** *
13255545 CCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCGCTAGTCG
131 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTAAGC-CCAG-CG
* * * * * * *
13255610 GATCAAGGGTTGTGGTAGCGGGACCGATAGCATACAGAGGGGGACCGGGCCGATCCCTGACTTGC
194 GACCGAGGGTTGTGGTAGCAGGATCGATAGCATGCAGAGGGGGACCGGGCTGATCCCTGACTTGT
* * * * * * *
13255675 GCATTATGCCTCTCCGATCGGCTCAGTGCCCGA-ACACTCGTTTCATGGGTTGTC-TAAGCATAC
259 GCATTATGCCTCTCCGATCGACTGAGTGCCC-ACACTCTCATTCCATGGGTTGACTTAGGCATAC
13255738 AGAGTTC
323 AGAGTTC
13255745 GTTCGTAGTC
Statistics
Matches: 531, Mismatches: 128, Indels: 28
0.77 0.19 0.04
Matches are distributed among these distances:
342 85 0.16
343 347 0.65
344 96 0.18
345 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (342 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACACAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCAC
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTAAGCCCAGCGGA
CCGAGGGTTGTGGTAGCAGGATCGATAGCATGCAGAGGGGGACCGGGCTGATCCCTGACTTGTGC
ATTATGCCTCTCCGATCGACTGAGTGCCCACACTCTCATTCCATGGGTTGACTTAGGCATACAGA
GTTCATCCCATGTCTAA
Found at i:13257039 original size:26 final size:26
Alignment explanation
Indices: 13256989--13257041 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13256979 GTTGACTTAG
*
13256989 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
13257015 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
13257041 G
1 G
13257042 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:13257377 original size:159 final size:159
Alignment explanation
Indices: 13257015--13257446 Score: 399
Period size: 159 Copynumber: 2.7 Consensus size: 159
13257005 CCTAGTCTAA
* * * * **
13257015 GCATAC-AGAGTTCATTCCCAATCTAAGATCAGATCAGACCAAGGGTTGCGGTAGTAGGATCGGT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
13257079 AGCACGTA-AGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGGCTGAATG
65 AGCACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCAACAGGCTCAACG
* *
13257143 CCTGCACGCCCATTTCATGGGTTGGCTTAG
130 CCCGCACGCCCATTTCATGGGTTGACTTAG
* * ** * * * * *
13257173 GCATAGGAAGTTCATT-CCATGTCCAAGCCCCAG-CCGAACCAAGGGTTGTGGCAGCGGGACCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGA
* * * * *** *
13257236 CAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTTCACATTATGCCTCTCTGGCATGCTCAAC
64 CAGCACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCAACAGGCTCAAC
* **
13257301 GCCCGCACGCTCATTTTGTGGGTTGACTTAG
129 GCCCGCACGCCCATTTCATGGGTTGACTTAG
* * *
13257332 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAACAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
* * * * *
13257397 GCATGCAG-GGGGGACCGAGCCGGTTCCC-GACTTGCGCATTCTGCCTCTCC
66 GCACGCAGAGGGGGACCGAGCCGATCCCCAG-CTTGCACATTATGCCTCTCC
13257447 GGTTGGCTGA
Statistics
Matches: 211, Mismatches: 56, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
157 4 0.02
158 81 0.38
159 123 0.58
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCAACAGGCTCAACGC
CCGCACGCCCATTTCATGGGTTGACTTAG
Found at i:13257490 original size:158 final size:156
Alignment explanation
Indices: 13257015--13257516 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 156
13257005 CCTAGTCTAA
* * * * *
13257015 GCATAC-AGAGTTCATTCCCA-ATCTAAGATCAGATCAGACCAAGGGTTGCGGTAGTAGGATCGG
1 GCATACGA-AGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
13257078 TAGCACGTAAGGGGGACCGGGCC-GATCCCCAGCTTGCGCATTCTGCCTCTCC-AACCGGCTGAA
64 CAGCACGCAGGGGGGACCGAGCCGGTTCCCGA-CTTGCGCATTCTGCCTCTCCGGA-TGGCTG-A
*
13257141 TGCCTGCACGCCCATTTCATGGGTTGGCTTAG
126 -GCCTGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * * * *
13257173 GCATAGGAAGTTCATTCCATGTCCAAGCCCCAG-CCGAACCAAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
13257237 AGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTTCACATTATGCCTCTCTGGCAT-GCTCAAC
65 AGCACGCAG-GGGGGACCGAGCCGGTTCCCGACTTGCGCATTCTGCCTCTCCGG-ATGGCT-GA-
* ** *
13257301 GCCCGCACGCTCATTTTGTGGGTTGACTTAG
126 GCCTGCACGCTCATTTCATGGGTTGGCTTAG
* * *
13257332 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCAGCAACAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* *
13257396 AGCATGCAGGGGGGACCGAGCCGGTTCCCGACTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCAC
65 AGCACGCAGGGGGGACCGAGCCGGTTCCCGACTTGCGCATTCTGCCTCTCCGGATGGCTGAGC-C
* *
13257461 TGGCTCGCTCGTTTCATGGGTTGGCTTAG
129 T-GCACGCTCATTTCATGGGTTGGCTTAG
*
13257490 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
13257517 CATATGGAGT
Statistics
Matches: 261, Mismatches: 69, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
156 2 0.01
157 9 0.03
158 131 0.50
159 112 0.43
160 6 0.02
161 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGGTTCCCGACTTGCGCATTCTGCCTCTCCGGATGGCTGAGCCTG
CACGCTCATTTCATGGGTTGGCTTAG
Found at i:13257540 original size:26 final size:26
Alignment explanation
Indices: 13257490--13257542 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13257480 GTTGGCTTAG
*
13257490 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13257516 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13257542 G
1 G
13257543 ATTGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Done.