Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 69 of 138
Found at i:13259308 original size:26 final size:26
Alignment explanation
Indices: 13259278--13259330 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13259268 GTTGACTTAG
13259278 GCATAC-AGAGTTCATCCCTAGTCTAA
1 GCATACGA-AGTTCATCCCTAGTCTAA
*
13259304 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
13259330 G
1 G
13259331 ATCGACCGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:13259642 original size:159 final size:160
Alignment explanation
Indices: 13259340--13259761 Score: 415
Period size: 159 Copynumber: 2.6 Consensus size: 160
13259330 GATCGACCGG
* * *** * *
13259340 GCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGG
1 GCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCACCCGCACGCCCGTTTCATGG
* * * *
13259405 GTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGAGCCAAGGGTTGTGGCAGC
66 GTTGACTTAGGTATACGGAGTTCATTCCATGTCTAAGCACCAACCGAGCCAAGGGTTGTGGCAGC
* *
13259470 GGGACCGACAGCACGTA-GAGGGGGATCGA
131 AGGACCGACAGCACGCAGGAGGGGGATCGA
* * *
13259499 GCCGATCCTCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCACCCGCACGCTCGTTTCGTGG
1 GCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCACCCGCACGCCCGTTTCATGG
* *
13259564 GTTGACTTAGGTATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACC-AGACCGAGGGTTGTGGC
66 GTTGACTTAGGTATACGGAGTTCATT-CCATGTCTAAGCACCA-ACCGAG-CCAAGGGTTGTGGC
* * * *
13259626 AGCAGGATCGATAGCACGCAGGA-GGGGACCGG
128 AGCAGGACCGACAGCACGCAGGAGGGGGATCGA
* * * * *** * * ** **
13259658 GTC-AGTCCCCGACTTGTGCATTCTGCCTCTCTGGCCGGCTGATCACCCATACGCTTGTTTCATG
1 GCCGA-TCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCACCCGCACGCCCGTTTCATG
* * * *
13259722 GGCTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
65 GGTTGACTTAGGTATACGGAGTTCATTCCATGTCTAAGCA
13259762 TACGGAGTTC
Statistics
Matches: 216, Mismatches: 40, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
158 8 0.04
159 202 0.94
160 6 0.03
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.23
Consensus pattern (160 bp):
GCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCACCCGCACGCCCGTTTCATGG
GTTGACTTAGGTATACGGAGTTCATTCCATGTCTAAGCACCAACCGAGCCAAGGGTTGTGGCAGC
AGGACCGACAGCACGCAGGAGGGGGATCGA
Found at i:13259764 original size:26 final size:26
Alignment explanation
Indices: 13259733--13259785 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13259723 GCTGGCTTAG
13259733 GCATACGAAGTTCATTCCAT-GTCTAA
1 GCATACGAAGTTCATTCC-TGGTCTAA
*
13259759 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGAAGTTCATTCCTGGTCTAA
13259785 G
1 G
13259786 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTGGTCTAA
Found at i:13259916 original size:185 final size:185
Alignment explanation
Indices: 13259576--13259945 Score: 494
Period size: 185 Copynumber: 2.0 Consensus size: 185
13259566 TGACTTAGGT
*
13259576 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGATAGC
* * * *
13259641 ACGCAGGAGGGGACCGGGTCAGTCCCCGACTTGTGCATTCTGCCTCTCTGGCCGGCTGATCACCC
66 ACGCAGAAGGGGACCGGGTCAGTCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCC
* *
13259706 ATACGCTTGTTTCATGGGCTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
131 ATACACTTATTTCATGGGCTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
** * * * * *
13259761 ATACGGAGTTCATTCCTGGTCTAAGATCGGATCAGACTGAGGGTTATGGCAGTAGGTTCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGATAGC
** * *
13259826 ACGCAGAAGGGGATGGGGT-TGATCCCCGGCTTGCGCATTCTGCCTCT-TCGGCCGGCTAAGCAC
66 ACGCAGAAGGGGACCGGGTCAG-TCCCCGACTTGCGCATTCTGCCTCTCT-GGCCGGCTAAGCAC
* * * *
13259889 TC-TCACATTTATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
129 CCAT-ACACTTATTTCATGGGCTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
13259946 CCCAGCCAGA
Statistics
Matches: 160, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
184 3 0.02
185 157 0.98
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (185 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGATAGC
ACGCAGAAGGGGACCGGGTCAGTCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCC
ATACACTTATTTCATGGGCTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
Found at i:13260608 original size:158 final size:158
Alignment explanation
Indices: 13260134--13260630 Score: 486
Period size: 158 Copynumber: 3.1 Consensus size: 158
13260124 CTAAGTATAT
* * * * * *
13260134 GGAGTTCATTCCCA-GTCTAAGATCGGA-CAGGATCGATGGTTGCGGTAGCAGGATCTACAGCAT
1 GGAGTTCATT-CCATGTCTAAGATCGGATCA-GACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * * * *
13260197 ACAGGGGGGACCGGGCTGAT-CCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGC
64 ACAGGGGGGATCGGGTTGGTCCCT-GGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGC
* * *
13260261 ATGCCCGTTTCGTGGGTTGGCTTAGGCATAG
128 ATGCTCGTTTCATGGGTTGGCTTAGGCATAC
** * * * *
13260292 GGAGTTCATTCCATGTCTAAGCCCCTG-TCGGACCAAGGGTTGTGGCAGCGGGATCGACAGCACA
1 GGAGTTCATTCCATGTCTAAG-ATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACA
* * * * * * * * *
13260356 CAGAGGGGGGTCCGGGTCGGTCCCCGGCTTGCGCATTATGCTTTTTC-AGCCGGCTCAGCACTCG
65 CAG-GGGGGAT-CGGGTTGGTCCCTGGCTTGCGCATTATGCCTCTCCGA-CCGGCTGAGCGCCCG
* ** * * *
13260420 AACACTCGTTTCATAGGTTGACTTAAGCATAC
127 CATGCTCGTTTCATGGGTTGGCTTAGGCATAC
* *
13260452 GGAGTTCATTCTCA-GTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACG
1 GGAGTTCATTC-CATGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACA
* *
13260516 CAGGGGGGATCGGGTTGGTCCCTGGCTTACGCAATT-TGCCTCTCCGATCGGCTGAGCGCCCGCA
65 CAGGGGGGATCGGGTTGGTCCCTGGCTTGCGC-ATTATGCCTCTCCGACCGGCTGAGCGCCCGCA
*
13260580 TGCTCATTTCATGGGTTGGCTTAGGCATAC
129 TGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
13260610 TGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
13260631 CATATGGAGT
Statistics
Matches: 264, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 124 0.47
159 21 0.08
160 110 0.42
161 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
AGGGGGGATCGGGTTGGTCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCATG
CTCGTTTCATGGGTTGGCTTAGGCATAC
Found at i:13260828 original size:26 final size:26
Alignment explanation
Indices: 13260799--13260851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13260789 GTTGACTTAG
*
13260799 GCATACGGAGTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
13260825 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13260851 G
1 G
13260852 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13261388 original size:26 final size:26
Alignment explanation
Indices: 13261338--13261390 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13261328 GTTGACTTAG
* *
13261338 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* *
13261364 GCATATGGAGTTCATTCTCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
13261390 G
1 G
13261391 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:13261874 original size:26 final size:26
Alignment explanation
Indices: 13261824--13261876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13261814 GTTGTCTTAG
*
13261824 GCATACAGAGTTCATTCTATTTCTAA
1 GCATACAGAGTTCATTCTATGTCTAA
13261850 GCATACAGAGTTCATTCGTA-GTCTAA
1 GCATACAGAGTTCATTC-TATGTCTAA
13261876 G
1 G
13261877 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTATGTCTAA
Found at i:13262049 original size:26 final size:26
Alignment explanation
Indices: 13262019--13262071 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13262009 GTTGACTTAG
13262019 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13262045 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13262071 G
1 G
13262072 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13262346 original size:159 final size:158
Alignment explanation
Indices: 13262085--13262385 Score: 374
Period size: 159 Copynumber: 1.9 Consensus size: 158
13262075 GAACCAGACT
* * *
13262085 GAGGGTTGTGATAGCAGGATCGACAGCACGCAGGAGGGACTGGGCCGATCCCCGGCTTGCGCATT
1 GAGGGTTGTGATAGCAAGATCGACAGCACGCAGGAGGGACTGGGCCAATCCCCGGCTTGCACATT
* * * * *
13262150 CTACCTCTCTGGCCGACTGAGCGCCCGTACGCCCATTTCGTGGGTTCACTTACGCGTA-GAGAGT
66 CTACCTCTCTGACCGACTAAGCGCCCGCACGCCCATTTCATGGGTTCACTTACGCATACG-GAGT
13262214 TCATTCCATGTCTTATCCCTAGCCGGACC
130 TCATTCCATGTCTTATCCCTAGCCGGACC
* * * * *
13262243 GAGGGTTGTGGTAGCAAGATCGGCAGCATGCAGAGGGGGA-TCGGGCCAATCCCTGGCTTGCACA
1 GAGGGTTGTGATAGCAAGATCGACAGCACGCAG-GAGGGACT-GGGCCAATCCCCGGCTTGCACA
* * * ** *
13262307 TTCTGCCTCT-TCGACCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
64 TTCTACCTCTCT-GACCGACTAAGCGCCCGCACGCCCATTTCATGGGTTCACTTACGCATACGGA
13262371 GTTCATTCCATGTCT
128 GTTCATTCCATGTCT
13262386 AAGCATACGG
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
158 31 0.26
159 88 0.73
160 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGGGTTGTGATAGCAAGATCGACAGCACGCAGGAGGGACTGGGCCAATCCCCGGCTTGCACATT
CTACCTCTCTGACCGACTAAGCGCCCGCACGCCCATTTCATGGGTTCACTTACGCATACGGAGTT
CATTCCATGTCTTATCCCTAGCCGGACC
Found at i:13262392 original size:26 final size:26
Alignment explanation
Indices: 13262362--13262414 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13262352 GTTGGCTTAG
13262362 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13262388 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13262414 G
1 G
13262415 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13263872 original size:158 final size:157
Alignment explanation
Indices: 13263372--13263872 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 157
13263362 CCCAGTCCAA
* * * * *
13263372 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCAAGGGTTACGGTAGCAGGATCAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATGA-T
* * * *
13263436 AGCAGGCATGGGGGACCGGGTTGATCCCCGACTTGCGCATTCA-GCCTCTCCGGCTGGTTGAGCA
64 AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATT-ATGCCTCTCCGGTTGGTTGAGCA
*
13263500 ACCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 ACCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
13263530 GCATA-GGGGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGACTGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGA-TGATA
* * * * * *
13263594 GCATGCAGAAGGGGATCGGGTCAATCCCC-AGCTTGTGCATTATGCCTCTCCGGTCGGCTT-AGC
65 GCACGCAG-GGGGGACCGGGTCGATCCCCGA-CTTGCGCATTATGCCTCTCCGGTTGG-TTGAGC
* * *
13263657 ACCCGCACGCTCATTTCGTGGGTTGACTTAG
127 AACCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
13263688 GCATACGAAGTTCTTTCC-TAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAAGATTGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGA-TGAT
* * * * * * **
13263752 AGCACGCAGGGGGGACCGAGCCGGTCCCCGACTAGCGCATTATACCTCTCCGATTGGTTGAGCGT
64 AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTTGGTTGAGCAA
* *
13263817 TCGCACGCTCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13263846 GCATACGGAGTTCATTCCATGCCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13263873 CATACGGAGT
Statistics
Matches: 269, Mismatches: 63, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 49 0.18
158 164 0.61
159 53 0.20
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATGATAG
CACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTTGGTTGAGCAACC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13264256 original size:26 final size:26
Alignment explanation
Indices: 13264227--13264279 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13264217 GTTGACTTAG
* *
13264227 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTTATCCCCAATCTAA
*
13264253 GCATACGAAGTTTATTCCCAATCTAA
1 GCATACGAAGTTTATCCCCAATCTAA
13264279 G
1 G
13264280 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTTATCCCCAATCTAA
Found at i:13264778 original size:26 final size:26
Alignment explanation
Indices: 13264728--13264780 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13264718 GTTCGCTTAG
*
13264728 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13264754 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGTTCATTCCAT-ATCTAA
13264780 G
1 G
13264781 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13264879 original size:184 final size:181
Alignment explanation
Indices: 13264570--13265123 Score: 641
Period size: 184 Copynumber: 3.0 Consensus size: 181
13264560 GTTGACTTAG
* * * * * *
13264570 GCATACGAAGTTCATTCCCAGTCTAAGATCGGAATCAAACTGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-ATCAGACCGAGGGTTACGGCAGCAGGATCGAC
* * * ** * * * * * *
13264635 AGCATGCACGGGCCA-CTGGGCTAGTCCCCGACTTACGCATT-TGCCTCTCCGACCGGCTGAGCA
65 AGCACGTAGGGGGGATC-GGGCGA-TCCCCG-CTTGCGCATTCTACCTATTCGACCGGCTGAGCG
13264698 CCCGCACGTTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 CCCGCACGTTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
13264754 GCATACGGAGTTCATTCCTAATCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGACA
*
13264819 GCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTTTTCGACCGGCTGAGCGCC
66 GCACGTAGGGGGGATCGGG-CGATCCCC-GCTTGCGCATTCTACCTATTCGACCGGCTGAGCGCC
* *
13264884 CGCATGCTT-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
129 CGCACG-TTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * **
13264938 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGGCAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * *
13265003 GCACGTAGAGGGGATCGGGCCGATCCCCGGATTGCGCATTCTACC-ACTCCAGCCGGCTGAGCGC
66 GCACGTAGGGGGGATCGGG-CGATCCCC-GCTTGCGCATTCTACCTATTCGA-CCGGCTGAGCGC
*** *
13265067 CCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CCGCACGTTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
13265122 GC
1 GC
13265124 CCCAGTCGGA
Statistics
Matches: 319, Mismatches: 40, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
183 61 0.19
184 252 0.79
185 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (181 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGTAGGGGGGATCGGGCGATCCCCGCTTGCGCATTCTACCTATTCGACCGGCTGAGCGCCCG
CACGTTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13264942 original size:26 final size:26
Alignment explanation
Indices: 13264912--13264964 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13264902 GTTGACTTAG
13264912 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13264938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13264964 G
1 G
13264965 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13264982 original size:685 final size:693
Alignment explanation
Indices: 13264189--13265989 Score: 2168
Period size: 685 Copynumber: 2.6 Consensus size: 693
13264179 TCTCCGGCCA
* * *
13264189 GCTGAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * * *
13264254 CATACGAAGTTTATTCCCAATCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGAACGGATCGAGGGTTACGGCAGCAGGATCGGTAG
* * *
13264319 CACACAGGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTACCTCTCCGACTGGCTGAGTGCTC
131 CAC-CAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGCGCCC
13264384 GTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGG
195 GTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GG
* * * * * * *
13264448 ATCAATGGTTATGGTAGCGGGACTGCCAGCACGTAGAGGGGGACTGAGCCGATCCTCAGCTTGTG
259 ACCGAGGGTTGTGGTAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCCGATCCTCAGCTTGTG
* * *
13264513 CATTATCCCTCTCCGACTGACTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGA
324 CATTATGCCTCTCCGACTGACTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* ** * * **
13264578 AGTTCATTCCCAGTCTAAGATCGGAATCAAA-CTGAGGGTTGCGGTAGTAGGATCGACAGCATGC
389 AGTTCATTCCCAGTCTAAGATCGG-ACCAAATC-GACAGTTACGATAGTAGGATCGACAGCACAC
*
13264642 ACGGGCCACTGGGCTAGTCCCCGACTTACGCATT-TGCCTCTCCGACCGGCTGAGCACCCGCACG
452 ACGGGCCACAGGGC-AGTCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACG
*
13264706 TTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
516 CTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * *
13264771 CTAATCTAAGATCGGATCAGACCGAGGGTTAC-G-GCA-G-C-AGGATCGACAGCACGTA-GGGG
581 CCAATCTAAGATCGGATCAAACCGAGGGTTACGGAGCAGGACAAGGATCGACAACACGTAGGGGG
** * *
13264830 GGATCGGGTCGATCCCCA-GCTTGCGCA-T-TCT-AC-CTTTTCGACCG
646 GGATCAAGTCGAT-CCCAGGCTTGCACATTCTCTCACGCCTTTCGACCG
* *
13264874 GCTGAGCGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * *
13264939 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGGCAGCAAGATCGGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGAACGGATCGAGGGTTACGGCAGCAGGATCGGTAG
* * * * *
13265004 CACGTAGAGGGGATCGGGCCGATCCCCGGATTGCGCATTCTACCACTCC-AGCCGGCTGAGCGCC
131 CAC-CAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CTGGCTGAGCGCC
* *
13265068 CGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
194 CGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * * *
13265133 ACCGAGGGTTGTGGTAACGGGACTGGCAGCACGTAGAGGGGGACCGGGTCGATCCTCGGCTTGCG
259 ACCGAGGGTTGTGGTAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCCGATCCTCAGCTTGTG
* * *
13265198 CATTATGCCTCTCCGACAGACTCAGCACCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACGG
324 CATTATGCCTCTCCGACTGACTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* ** * * *
13265263 AGTTTATTCCCAGTCTAAGATCGGACCGGATCGACAGTTACGATAGTAGGATTGACAGCACATAG
389 AGTTCATTCCCAGTCTAAGATCGGACCAAATCGACAGTTACGATAGTAGGATCGACAGCACACAC
* * * * * * * * * * * ** *
13265328 GGGGCACAGGTCGGTCCTCGGCTTGCGTATTCTGCCTTTCTGGCCGGCTTAGTGCCCGTACGCTC
454 GGGCCACAGGGCAGTCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTC
* * *
13265393 GTTTCCTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCA
519 GTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* *
13265458 ATCTAAGATCGGATCAAACCGAGGGTTACGGTAGCAGGACCAGTAGTAGGATCGGCAATACGTAG
584 ATCTAAGATCGGATCAAACCGAGGGTTACGG-AGCAGGA-C---A--AGGATCGACAACACGTAG
13265523 GGGGGGATCAAGTCGATCCCAGGCTTGCACATTCTGCCTCTCCGACTGGCCTTTCGACCG
642 GGGGGGATCAAGTCGATCCCAGGCTTGCACA-T-T--CTCT-C-AC--GCCTTTCGACCG
* *
13265583 ACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * *
13265648 CATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGATCGAGGGTTGCGACAGCAGGATCGGCA
66 CATACGGAGTTCATTCCCAGTCTAAGATCGGAAC-GGATCGAGGGTTACGGCAGCAGGATCGGTA
* * * * * * * * * *
13265712 GGACCTAGGGGGGATCGAGCCGATCCCCAGCTTGAGCATTTTGCCTCTTCG-GTCGACTGAACGC
130 GCACC-AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACT-GGCTGAGCGC
* * * * *
13265776 CCGTACGCCTGTTTTGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGTCA
193 CCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * * *
13265840 GACCGAGGGTTGTGGTAGTGGGACCGGTAGCACGTAGAGGGGGACCGGGCTGATCC-CCGACTTG
258 GACCGAGGGTTGTGGTAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCCGATCCTCAG-CTTG
* * * * * * *
13265904 TGCATTCTGCATCTCTGACCTG-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
322 TGCATTATGCCTCTCCGA-CTGACTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATA
*
13265968 AGGAGTTCATT-CCATGTCTAAG
386 CGGAGTTCATTCCCA-GTCTAAG
13265990 CATACGGAGT
Statistics
Matches: 946, Mismatches: 133, Indels: 51
0.84 0.12 0.05
Matches are distributed among these distances:
683 14 0.01
684 151 0.16
685 370 0.39
686 1 0.00
687 3 0.00
688 1 0.00
690 1 0.00
696 18 0.02
697 23 0.02
700 1 0.00
703 3 0.00
706 2 0.00
707 5 0.01
708 130 0.14
709 223 0.24
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (693 bp):
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGAACGGATCGAGGGTTACGGCAGCAGGATCGGTAG
CACCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGCGCCCG
TACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
CGAGGGTTGTGGTAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCCGATCCTCAGCTTGTGCA
TTATGCCTCTCCGACTGACTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAAATCGACAGTTACGATAGTAGGATCGACAGCACACACGG
GCCACAGGGCAGTCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGT
TTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAAT
CTAAGATCGGATCAAACCGAGGGTTACGGAGCAGGACAAGGATCGACAACACGTAGGGGGGGATC
AAGTCGATCCCAGGCTTGCACATTCTCTCACGCCTTTCGACCG
Found at i:13265462 original size:26 final size:26
Alignment explanation
Indices: 13265412--13265464 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13265402 GTTTGCTTAG
*
13265412 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13265438 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13265464 G
1 G
13265465 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13265651 original size:26 final size:26
Alignment explanation
Indices: 13265621--13265673 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13265611 GTTGACTTAG
13265621 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13265647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13265673 G
1 G
13265674 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13265993 original size:26 final size:26
Alignment explanation
Indices: 13265963--13266015 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13265953 GTTGGCTTAG
13265963 GCATAAGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
*
13265989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
13266015 G
1 G
13266016 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:13267468 original size:26 final size:26
Alignment explanation
Indices: 13267439--13267491 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13267429 GTTAGGTTAG
*
13267439 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13267465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13267491 G
1 G
13267492 ATCGAACCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13268542 original size:26 final size:26
Alignment explanation
Indices: 13268506--13268556 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13268496 TGGCTTAGTT
*
13268506 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
13268532 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13268557 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:13269105 original size:26 final size:26
Alignment explanation
Indices: 13269069--13269121 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13269059 GTTGGCTTAG
13269069 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13269095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13269121 G
1 G
13269122 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13269853 original size:26 final size:26
Alignment explanation
Indices: 13269823--13269878 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
13269813 TGGGTTGACT
13269823 TAAGCATATGGAGTTCA-TCCCTAGTC
1 TAAGCATATGGAGTTCATTCCC-AGTC
13269849 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
13269875 TAAG
1 TAAG
13269879 ATCGGACGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCCCAGTC
Found at i:13270258 original size:159 final size:157
Alignment explanation
Indices: 13269851--13270353 Score: 525
Period size: 159 Copynumber: 3.2 Consensus size: 157
13269841 CCCTAGTCTA
* ** * *
13269851 AGCATATGGAGTTCATTCCCA-GTCTAAGATCG-GACGGGACTGAGGGTTGCGGCAGTAGGATTT
1 AGCATACGGAGTTCATT-CCATGTCTAAGATCGAGAC-GGACCAAGGGTTGCGGCAGCAGGA-TC
* *
13269914 G-CAGCATGTAAGGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAG
63 GACAGCACGTAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAG
* *
13269978 CGCCCGCACGCCCGTTTCATGGGTTGGCTT
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * ** * * * *
13270008 AGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGTCGGA-CAGAGGGTTGTGGCAGC-GAGACCG
1 AGCATACGGAGTTCATTCCATGTCTAAGATCGAGACGGACCA-AGGGTTGCGGCAGCAG-GATCG
* * * * * * *
13270071 ACAGCACGCAAAGGGGCACCGGGCCGAT-CCTCGGCTTGCGCATTATGCCTCTTCGGTCGGTTCA
64 ACAGCACG-TAAGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGATCGGTTGA
* * * *
13270135 ACGCCCGCACACTCATTTCGTGGGTTGACTT
127 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * *
13270166 ATGCATACGAAGTTCATTCCCA-GTCTAAGATCGAAACGGACCAAGGGTTACGACAGCAGGATCG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGATCGAGACGGACCAAGGGTTGCGGCAGCAGGATCG
* * * **
13270230 ACAGCACGTAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTACCTCTCCAATCGACTGAG
64 ACAGCACGTA-AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAG
13270295 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
13270325 AGGCATACGGAGTTCATTCCATGTCTAAG
1 A-GCATACGGAGTTCATTCCATGTCTAAG
13270354 CATACGGAGT
Statistics
Matches: 275, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
156 5 0.02
157 49 0.18
158 75 0.27
159 137 0.50
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
AGCATACGGAGTTCATTCCATGTCTAAGATCGAGACGGACCAAGGGTTGCGGCAGCAGGATCGAC
AGCACGTAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:13270378 original size:26 final size:26
Alignment explanation
Indices: 13270327--13270379 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13270317 GTTGGCTTAG
*
13270327 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
13270353 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
13270379 G
1 G
13270380 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:13275672 original size:26 final size:26
Alignment explanation
Indices: 13275622--13275674 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13275612 GTTGGCTTAG
*
13275622 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13275648 GCATACGGAGTTCATTCTC-TATCTAA
1 GCATACGGAGTTCATTC-CATATCTAA
13275674 G
1 G
13275675 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13278771 original size:26 final size:26
Alignment explanation
Indices: 13278742--13278820 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
13278732 GTTGGCTTAG
13278742 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTTATTCCATGTCTAA
13278768 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTTATTCCATGTCTAA
*
13278794 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTTATT-CCATGTCTAA
13278820 G
1 G
13278821 ATCAGACCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCATGTCTAA
Found at i:13279142 original size:171 final size:170
Alignment explanation
Indices: 13278794--13279163 Score: 442
Period size: 171 Copynumber: 2.2 Consensus size: 170
13278784 CCATGTCTAA
* * *
13278794 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGATAGCAGGACCCGT
1 GCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCAAACCAAGGGTTGCGATAGCAGGACCCGT
* * * * *
13278858 AGCAGGATCGATAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGG
65 AGCAGGATCGATAGCATGCAAGGGGGACCGGCTCGATCCCCGGCTTACCCATTATGCCTCTCCGG
*** **
13278923 CCGGTTGAGCGCCCGCACGCTCATTCCATGGGTTGGTTTAG
130 CCGACGGAGCGCCCGCACGCTCATTCCATGGGTTGACTTAG
* * *
13278964 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCAAACCAAGGGTTGTGGTAGCAGGA-CCGA
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCAAACCAAGGGTTGCGATAGCAGGACCCG-
* * * * *
13279027 TAGCGGGATCGGTAGCATGCAAAGGGGGACCAGGCT-GATCCCTGGCTTACGCGTTATGCCTCTC
64 TAGCAGGATCGATAGCATGC-AAGGGGGACC-GGCTCGATCCCCGGCTTACCCATTATGCCTCTC
* *
13279091 CGGTCGACGGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
127 CGGCCGACGGAGCGCCCGCACGCTCATTCCATGGGTTGACTTAG
*
13279135 GCATACGGAGTTCATCCCCAGTCTAAGCA
1 GCATACGGAGTTCAT-TCCAGTCTAAGCA
13279164 TATAGAGTTC
Statistics
Matches: 169, Mismatches: 25, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
169 6 0.04
170 63 0.37
171 94 0.56
172 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCAGTCTAAGCACCAGACCAAACCAAGGGTTGCGATAGCAGGACCCGTA
GCAGGATCGATAGCATGCAAGGGGGACCGGCTCGATCCCCGGCTTACCCATTATGCCTCTCCGGC
CGACGGAGCGCCCGCACGCTCATTCCATGGGTTGACTTAG
Found at i:13279165 original size:26 final size:26
Alignment explanation
Indices: 13279135--13279187 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13279125 GTTGACTTAG
*
13279135 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13279161 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13279187 G
1 G
13279188 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13279346 original size:197 final size:197
Alignment explanation
Indices: 13279085--13279469 Score: 565
Period size: 197 Copynumber: 2.0 Consensus size: 197
13279075 ACGCGTTATG
* * *
13279085 CCTCTCCGGTCGACGGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGACGGAGCACCCGCACGCACATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* *
13279150 CCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAG
* * * *
13279215 GAAGACCAGCAGCACGCAAGGGGGACTGAGCCGAT-CCTCGGCTTTTGCATTCTGCCTCCCCAAC
131 CAAGACCAGCAGCACGCAAGGGGGACCGAGCCAATCCCT-GGCTTGTGCATTCTGCCTCCCCAAC
13279279 TGA
195 TGA
* * * *
13279282 CCTCTCTGGCCGACTGAGCACCCGCATGCACATTTCATGGGTTGACTTAGGCATACGTAGTTCAT
1 CCTCTCCGGCCGACGGAGCACCCGCACGCACATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* *
13279347 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTGCGATAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAG
* * * * * *
13279412 CAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGTGCATTCTGCCTC
131 CAAGACCAGCAGCACGCAAGGGGGACCGAGCCAATCCCTGGCTTGTGCATTCTGCCTC
13279470 TCCGATCGGC
Statistics
Matches: 166, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
197 163 0.98
198 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (197 bp):
CCTCTCCGGCCGACGGAGCACCCGCACGCACATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAG
CAAGACCAGCAGCACGCAAGGGGGACCGAGCCAATCCCTGGCTTGTGCATTCTGCCTCCCCAACT
GA
Found at i:13279362 original size:26 final size:26
Alignment explanation
Indices: 13279332--13279383 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13279322 GTTGACTTAG
13279332 GCATAC-GTAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
13279358 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13279384 TATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13279720 original size:159 final size:158
Alignment explanation
Indices: 13279422--13279862 Score: 381
Period size: 159 Copynumber: 2.8 Consensus size: 158
13279412 CAGGATCGGT
* * * *
13279422 AGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGC
1 AGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
* * * * * *
13279487 TCGCATGCCCGTTTCGTGTGTTGGCTTAGGAATAAGGAGTTCATTCCATGTCTAAGCCTCAGTCG
66 CCGCACGCCCGTTTCGTGGGTTGACTTAGGAATAAGGAGTTAATTCCATGTCTAAGCATCAGTCG
13279552 GACAGAGGGTTGTGGCAACGGGACCGAC
131 GACAGAGGGTTGTGGCAACGGGACCGAC
* ** ** * *
13279580 AGCACGCAGAGGGGGATCGGGTGAATCCCTGGCTTGCGCATTATTTCTCTTCGATCGGTTCAGCG
1 AGCACGCAG-GGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCG
* * * *
13279645 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACA-GAGTTAATTCTCA-GTCTAAG-ATTAG
65 CCCGCACGCCCGTTTCGTGGGTTGACTTAGGAATA-AGGAGTTAATTC-CATGTCTAAGCATCA-
* * * * *
13279707 GTCGGATAGAGGGTTGCT-GTAGCAGGATCGAC
127 GTCGGACAGAGGGTTG-TGGCAACGGGACCGAC
* ** * * * * *
13279739 AGCACACAGGGAGGGACC-GATCGAT-CCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGC
1 AGCACGCAGGG-GGGACCGGGCCAATCCCT-GGCTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* * * * * * * * * *
13279802 GCCCACATGCACATTTTGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
64 GCCCGCACGCCCGTTTCGTGGGTTGACTTAGGAATAAGGAGTTAATTCCATGTCTAAGCAT
13279863 ACAGAGTTCA
Statistics
Matches: 226, Mismatches: 47, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 89 0.39
159 128 0.57
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
AGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
CCGCACGCCCGTTTCGTGGGTTGACTTAGGAATAAGGAGTTAATTCCATGTCTAAGCATCAGTCG
GACAGAGGGTTGTGGCAACGGGACCGAC
Found at i:13279869 original size:26 final size:26
Alignment explanation
Indices: 13279833--13279885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13279823 GTTGGCTTAG
*
13279833 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13279859 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13279885 G
1 G
13279886 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13280035 original size:185 final size:184
Alignment explanation
Indices: 13279675--13280045 Score: 521
Period size: 185 Copynumber: 2.0 Consensus size: 184
13279665 GTTGACTTAG
* * ** * *
13279675 GCATACAGAGTTAATTCTCAGTCTAAGATTAGGTCGGATAGAGGGTTGCTGTAGCAGGATCGACA
1 GCATACAGAGTTAATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATCGACA
* *
13279740 GCACACAGGGAGGGACCGATCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACACAGGGAGGGACCGACCGATCCTCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCC
* **
13279805 CACATGCACATTTTGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CACACGCACATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
13279859 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACAGAGTTAATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATCGACA
* * * *
13279924 GCACGCAGAGG-GGGACCGAGCCGATCC-CTGGCTTTCACATTCTGCCTCTCTGGCCGGCTGAGC
66 GCACACAG-GGAGGGACCGA-CCGATCCTC-GGCTTACACATTCTGCCTCTCCGACCGGCTGAGC
* * *
13279987 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 GCCCACACGCACATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13280044 GC
1 GC
13280046 CCTAGTCGGA
Statistics
Matches: 164, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
184 73 0.45
185 91 0.55
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTAATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATCGACA
GCACACAGGGAGGGACCGACCGATCCTCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCC
CACACGCACATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13280235 original size:26 final size:26
Alignment explanation
Indices: 13280205--13280254 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13280195 GACTTAGGCT
13280205 TATGGAGTTCATCCCCAGTCTAAGCA
1 TATGGAGTTCATCCCCAGTCTAAGCA
* *
13280231 TATGGAGTTCATTCCCAGTTTAAG
1 TATGGAGTTCATCCCCAGTCTAAG
13280255 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TATGGAGTTCATCCCCAGTCTAAGCA
Found at i:13281144 original size:26 final size:26
Alignment explanation
Indices: 13281115--13281167 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13281105 GTTGACTTAG
13281115 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** * *
13281141 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13281167 G
1 G
13281168 ATCAGACGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13286343 original size:26 final size:26
Alignment explanation
Indices: 13286307--13286359 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13286297 GTTGACTTAG
*
13286307 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCACAGTCTAA
* *
13286333 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATAGAGTTCATCCACAGTCTAA
13286359 G
1 G
13286360 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCACAGTCTAA
Found at i:13286653 original size:159 final size:160
Alignment explanation
Indices: 13286374--13287153 Score: 629
Period size: 159 Copynumber: 4.9 Consensus size: 160
13286364 GATCGAGCCA
* * * * * ** * *
13286374 AGGGTTGCGGCAACAGGATCGATAGCACG-AAAGGGGGATCGGGCC-ATTCCATGGCTTACGCAT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGA-TCCCCGACTTGCGCAT
* * * * * ** * * *
13286437 TCTGCCTCTCCGGTCGGCTGAGCATCAGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
65 TATGCCTCTCTGCTCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGT
*
13286502 TCATTCCATGTCTAAGCCCCAG-CCAGACCG
130 TCATTCCATGTCTAAGCCCCAGACCGGACCG
** * ** * *
13286532 AGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAACTGATCCTCGACTTGCGCATT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
* * * * * *
13286597 ATGCCTCTTCAGCTAG-CTCAGCGCCCGCACGCTCATTTAATGAGTTGACTTAGGCATACGGAGT
66 ATGCCTC-TCTGCTCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGT
* ** * *
13286661 TCATTCC-TAGTCAAAG-ATCAGACCGAACCA
130 TCATTCCAT-GTCTAAGCCCCAGACCGGACCG
* * ** * * *
13286691 AAGGTTATGATAGCAGGATCGACAGCATGCAG-GGGGGACTGGGCCGATCCCCGGCTTGCGCATT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
* * * * * ** *
13286755 CTGCCTCTCTGATCGACTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTTTGCATAGTGAGTT
66 ATGCCTCTCTGCTCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
*
13286820 CATTCCATGTCTAAGCCCC--ACCTGGACTG
131 CATTCCATGTCTAAGCCCCAGACC-GGACCG
* * * * * *
13286849 AGGGTTGTGGCAGCAGGATCGACAGCACGTACAGGGGGACCGGGCTGATCCCCGGCTTACGAATT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
* * * * ** *
13286914 ATGCCTCT-TCGAC-CGGCTCAGCGCCCGTACGCTTATTTCATGGGTTGACTTATACATACGGAG
66 ATGCCTCTCT-G-CTCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAG
** * *
13286977 TTCATTTCCA-GTCTAAG-GTCGGACCGGACTG
129 TTCA-TTCCATGTCTAAGCCCCAGACCGGACCG
* * * *
13287008 AGGGTTGCT-GCAACAGGATCGACAGCATGCAGGGGGGGACCGGGCCGAT-CCCTAGCTTGCGCA
1 AGGGTTG-TGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA-CTTGCGCA
* * * * * *
13287071 TTCTGCCTCTCTGGTCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCGT-GCGGA
64 TTATGCCTCTCTGCTCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAG-GGA
13287135 GTTCATTCCATGTCTAAGC
128 GTTCATTCCATGTCTAAGC
13287154 ATACGGTGTT
Statistics
Matches: 482, Mismatches: 118, Indels: 42
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.02
158 148 0.31
159 310 0.64
160 16 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
ATGCCTCTCTGCTCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCCCCAGACCGGACCG
Found at i:13286917 original size:317 final size:318
Alignment explanation
Indices: 13286334--13287153 Score: 949
Period size: 317 Copynumber: 2.6 Consensus size: 318
13286324 CCAGTCTAAG
* * * * * * ** *
13286334 CATATGGAGTTCA-TTCACAGTCTAAGATCGGATCGAGCCAAGGGTTGCGGCAACAGGATCGATA
1 CATACGGAGTTCATTTC-CAGTCAAAGATCAGACCGAACCAAAGGTTGATGCAACAGGATCGACA
* ** * ** * * * *
13286398 GCACG-AAAGGGGGATCGGGCC-ATTCCATGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCA
65 GCATGCAGGGGGGGACCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCG
* * *
13286461 TCAGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
** * * *
13286526 AGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAACTGATCCTCGACTTG
194 AGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCACAGGGGGACCGAACTGATCCCCGACTTA
* * *
13286591 CGCATTATGCCTCTTC-AGCTAGCTCAGCGCCCGCACGCTCATTTAATGAGTTGACTTAGG
259 CGAATTATGCCTCTTCGA-CCAGCTCAGCGCCCGCACGCTCATTTAATGAGTTGACTTAGA
13286651 CATACGGAGTTCA-TTCCTAGTCAAAGATCAGACCGAACCAAAGGTT-ATG-ATAGCAGGATCGA
1 CATACGGAGTTCATTTCC-AGTCAAAGATCAGACCGAACCAAAGGTTGATGCA-A-CAGGATCGA
* * *
13286713 CAGCATGCA-GGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGACTGAAC
63 CAGCATGCAGGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGC
** *
13286777 GCCCGCACGCTCGTTTCATGGGTTGGCTTTTGCATAGTGAGTTCATTCCATGTCTAAGCCCCA-C
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * ** *
13286841 CTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTACAGGGGGACCGGGCTGATCCCCGGCT
193 C-AGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCACAGGGGGACCGAACTGATCCCCGACT
* * * * * *
13286906 TACGAATTATGCCTCTTCGACCGGCTCAGCGCCCGTACGCTTATTTCATGGGTTGACTTATA
257 TACGAATTATGCCTCTTCGACCAGCTCAGCGCCCGCACGCTCATTTAATGAGTTGACTTAGA
* * * * ** * *
13286968 CATACGGAGTTCATTTCCAGTCTAAGGTCGGACCGGACTGAGGGTTGCTGCAACAGGATCGACAG
1 CATACGGAGTTCATTTCCAGTCAAAGATCAGACCGAACCAAAGGTTGATGCAACAGGATCGACAG
** *
13287033 CATGCAGGGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGTGCC
66 CATGCAGGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCC
*
13287098 CGCACGCTCGTTTCATGGGTTGGCTTAGGCGT-GCGGAGTTCATTCCATGTCTAAGC
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGC
13287154 ATACGGTGTT
Statistics
Matches: 425, Mismatches: 66, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
315 1 0.00
316 5 0.01
317 306 0.72
318 112 0.26
319 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (318 bp):
CATACGGAGTTCATTTCCAGTCAAAGATCAGACCGAACCAAAGGTTGATGCAACAGGATCGACAG
CATGCAGGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCACAGGGGGACCGAACTGATCCCCGACTTACG
AATTATGCCTCTTCGACCAGCTCAGCGCCCGCACGCTCATTTAATGAGTTGACTTAGA
Found at i:13288178 original size:159 final size:159
Alignment explanation
Indices: 13287995--13288371 Score: 433
Period size: 158 Copynumber: 2.4 Consensus size: 159
13287985 CTGACTGAGT
* * * *
13287995 GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
**
13288059 CTAGACCGAGGGTTGTGGCAGC-GAGACCGACAGCACATAGAGGGGGACCGGGTCGAT-CCTCAG
66 CTAGACCGAGGGTTACGGCAGCAG-GACCGACAGCACATAG-GGGGGACCGGGTCGATCCCT-AG
* **
13288122 CTTGCGCATTAC-GCCTCTCTGGTCGGCTCAGC
128 CTTGCGCATT-CTGCCTCTCCGACCGGCTCAGC
* * * * * *
13288154 GCCCGCATGCTCGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATTCC-TAGTCAAAG-ATCAG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG
* * * * * * * *
13288217 ATTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGGGACTGGGTCGGTCCCTGGCT
65 ACTAGACCGAGGGTTACGGCAGCAGGACCGACAGCACATAGGGGGGACCGGGTCGATCCCTAGCT
* *
13288282 TGCGCATTCTGCCTCTCCGACCGGCTGAGT
130 TGCGCATTCTGCCTCTCCGACCGGCTCAGC
*
13288312 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13288372 TACGGAGTTC
Statistics
Matches: 180, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 94 0.52
159 84 0.47
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CTAGACCGAGGGTTACGGCAGCAGGACCGACAGCACATAGGGGGGACCGGGTCGATCCCTAGCTT
GCGCATTCTGCCTCTCCGACCGGCTCAGC
Found at i:13288324 original size:158 final size:158
Alignment explanation
Indices: 13287875--13288369 Score: 513
Period size: 159 Copynumber: 3.1 Consensus size: 158
13287865 CTAACCGTAT
* * ** *
13287875 GGAGTTCATTCCTAGTCTAAGATCAAACTGGACTGAGGGTTACGGTAGCAGGATCGGTAGCACGC
1 GGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGT
* * * * * *
13287940 AGGGGGGA-TCGGCCGGTCTCC-GGCTTGCGCATTCTACCTC-CCCAGCTGACTGAGTGCCCGCA
66 AGGGGGGACTGGGTCGGTC-CCTGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGTGCCCGCA
* * *
13288002 CGCCCATTTCGTGGGTTGGCTTAGGCATAG
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
** * ** * *
13288032 GGAGTTCATTCC-ATGTCTAAGCCCCAG-CTAGACCGAGGGTTGTGGCAGC-GAGACCGACAGCA
1 GGAGTTCATTCCTA-GTCTAAG-ATCAGACTGGACCGAGGGTTACGGTAGCAG-GATCGACAGCA
* * * * * ** * *
13288094 CATAGAGGGGGACCGGGTCGAT-CCTCAGCTTGCGCATTAC-GCCTCTCTGGTCGGCTCAGCGCC
63 CGTAG-GGGGGACTGGGTCGGTCCCT-GGCTTGCGCATT-CTGCCTCTCCGACCGGCTGAGTGCC
* * * *
13288157 CGCATGCTCGTTTCATGGGTTGACTTAGGCAGAC
125 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
13288191 GGAGTTCATTCCTAGTCAAAGATCAGATTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGT
1 GGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGT
13288256 AGGGGGGACTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACG
66 AGGGGGGACTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACG
*
13288321 CTCGTTTCGTGGGTTGGCTTAGGCATAT
131 CTCGTTTCGTGGGTTGGCTTAGGCATAC
13288349 GGAGTTCATTCC-ATGTCTAAG
1 GGAGTTCATTCCTA-GTCTAAG
13288370 CATACGGAGT
Statistics
Matches: 265, Mismatches: 58, Indels: 29
0.75 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 51 0.19
158 101 0.38
159 107 0.40
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGT
AGGGGGGACTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:13288379 original size:26 final size:26
Alignment explanation
Indices: 13288343--13288395 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13288333 GTTGGCTTAG
*
13288343 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13288369 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13288395 G
1 G
13288396 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13288501 original size:184 final size:184
Alignment explanation
Indices: 13288189--13288553 Score: 478
Period size: 184 Copynumber: 2.0 Consensus size: 184
13288179 ACTTAGGCAG
* ** **
13288189 ACGGAGTTCATTCCTAGTCAAAGATCAGATTGGACCGAGGGTTACGGTAGCAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCAAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCAC
** * ** * * * * *
13288254 GTAGGGGGGACTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCA
66 ACAGGGGGGACCGGACCGATCCCTAGCTTGCGCATTCTGCCTCTCCAACCGACTGAATGCCCGCA
* * * *
13288319 CGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAT
131 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCAT
* ** ** *
13288373 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACCTCAGGATCGGTAGCAT
1 ACGGAGTTCATTCCCAGTCAAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCAC
* *
13288438 ACAGGGGGGACCGGACCGATCCCTAGCTTGTGCATTCTGCCTCTCCAATCGACTGAATGCCCGCA
66 ACAGGGGGGACCGGACCGATCCCTAGCTTGCGCATTCTGCCTCTCCAACCGACTGAATGCCCGCA
*
13288503 TGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
131 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
13288554 TCCCAGCCGG
Statistics
Matches: 153, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
184 153 1.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
ACGGAGTTCATTCCCAGTCAAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCAC
ACAGGGGGGACCGGACCGATCCCTAGCTTGCGCATTCTGCCTCTCCAACCGACTGAATGCCCGCA
CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCAT
Found at i:13289393 original size:25 final size:26
Alignment explanation
Indices: 13289358--13289409 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13289348 GTTGACTTAG
*
13289358 GCATACAGAGTTCATCCCCTGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13289384 GCATA-AGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13289409 G
1 G
13289410 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13289755 original size:159 final size:158
Alignment explanation
Indices: 13289592--13289883 Score: 361
Period size: 158 Copynumber: 1.8 Consensus size: 158
13289582 GGGTTGTGGC
* * * *
13289592 AGCAGGACCAACAGCACGTAGAGGGGGACCGGGCCGATCCCTGGCTCGCGCACTCTGCCTCTTCG
1 AGCAGGACCAACAGCACGCAGAGGGGGACCGGGACGATCCC-GGCTCGCACACTCTGCCTCTCCG
* * * *
13289657 ACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTATGCATACGGAGTTCATTCCCA-GT
65 ACCGGCTCAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGAATACGGAGTTCATT-CCATGT
13289721 CTAAGATTGGATCAGACTGAGGGTTACAAT
129 CTAAGATTGGATCAGACTGAGGGTTACAAT
* * * * * * ** * *
13289751 AGCAGGATCGATAGCAGGCAGGGGGGGATCGGGACGATCCCGGCTTTCACATTCTGCCTCTCCGG
1 AGCAGGACCAACAGCACGCAGAGGGGGACCGGGACGATCCCGGCTCGCACACTCTGCCTCTCCGA
* * * *
13289816 CCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCT
66 CCGGCTCAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGAATACGGAGTTCATTCCATGTCT
13289881 AAG
131 AAG
13289884 CATACGGAGT
Statistics
Matches: 110, Mismatches: 22, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
157 3 0.03
158 74 0.67
159 33 0.30
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGCAGGACCAACAGCACGCAGAGGGGGACCGGGACGATCCCGGCTCGCACACTCTGCCTCTCCGA
CCGGCTCAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGAATACGGAGTTCATTCCATGTCT
AAGATTGGATCAGACTGAGGGTTACAAT
Found at i:13289909 original size:26 final size:26
Alignment explanation
Indices: 13289859--13289909 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13289849 TGGCTTAGGA
* *
13289859 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTACATTCCATGTATAAGC
13289885 ATACGGAGTACATTCCCA-GTATAAG
1 ATACGGAGTACATT-CCATGTATAAG
13289910 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTACATTCCATGTATAAGC
Found at i:13290615 original size:26 final size:26
Alignment explanation
Indices: 13290579--13290631 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13290569 GTTGACTTAG
*
13290579 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13290605 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13290631 G
1 G
13290632 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13291067 original size:158 final size:155
Alignment explanation
Indices: 13290605--13291106 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 155
13290595 CCCAGTCTAA
* * *
13290605 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAACAGGATCGAC
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGATCGGAC-GAGGGTT-CGGTAGCAGGATCGAC
* * * * * *
13290669 AGCGCCCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGC
63 AGCACGCAAGGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGC
* * *
13290734 CCGTATGCCCGTTTCATGGGTTGGCTTAG
127 CCGCACGCTCGTTTCATGGGTTGGCTTAG
** ** *
13290763 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTT-GTGTCAGCGGGA-CAG
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGATCGGA-CGAGGGTTCG-GT-AGCAGGATC-G
* * * * *
13290825 ACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATCCCTCTCCGG-CTGGCTCA
61 ACAGCACGCA-AGGGGGACCG-GGCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTC-GACTGA
* *
13290889 GCGCCCGCACGCTCATTTCATGGGTTGACTTAG
123 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
13290922 GCATACAAAGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTACGGTAGTAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGATCGGA-CGAGGGTT-CGGTAGCAGGATCGAC
* * * * *
13290986 AACATGCAAGGGGGACCGGGTCAATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGT
63 AGCACGCAAGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGC
13291051 CCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CCGCACGCTCGTTTCATGGGTTGGCTTAG
**
13291080 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
13291107 CATACGGAGT
Statistics
Matches: 280, Mismatches: 47, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 143 0.51
159 121 0.43
160 8 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGATCGGACGAGGGTTCGGTAGCAGGATCGACAGC
ACGCAAGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13291110 original size:26 final size:26
Alignment explanation
Indices: 13291080--13291132 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13291070 GTTGGCTTAG
*
13291080 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13291106 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13291132 G
1 G
13291133 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13291846 original size:26 final size:26
Alignment explanation
Indices: 13291816--13291867 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13291806 TTGACTTAGA
*
13291816 CATACGGAGTTCA-TCCCTAGTCTAAG
1 CATACAGAGTTCATTCCC-AGTCTAAG
*
13291842 CATACAGAGTTTATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
13291868 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:13292658 original size:343 final size:343
Alignment explanation
Indices: 13292108--13292850 Score: 911
Period size: 343 Copynumber: 2.2 Consensus size: 343
13292098 CGGTTGAGTG
* * * *
13292108 CCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGGTCATCCCTAGTCTAAGCATATAGA
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGA
* *** * *
13292173 GTTTATTTTTAGTCTAAGATCGGACCAGACCGAAGGTTACGACAGTAGGATCAGCAGCACGCAGG
66 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTAAGACAGTAGGATCAGCAGCACGCAGG
* * ** * *
13292238 GGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCCGTCGGCTGAGTGCCCGCACGTCT
131 GGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCCGTCAGCTGAGCCCCCGCACGCCG
* * *
13292303 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCGGTC-GAAAT-AGGA
196 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-AATGAGG-
* * * * * *** *
13292366 GTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGATTGGGCCGATCCTCGGCTTATGCATTATG
259 GTTATGGCAGCAGCACCGACAGCACGCAGAGGGGGAACAGGCCGATCCTCGGCTTACGCATTATG
* * *
13292431 CCTCTTCGGTCGGCTCAGCA
324 CCTATCCGGCCGGCTCAGCA
* * *
13292451 CCTGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTATA-CATAT-G
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA-AGCATATAG
* * * * * *
13292514 AAGTTCATTCCCAGTCTAAGGTCAGATCGGACCGAGGGTTATAG-TAGTAGGATCGGCAGCACGC
65 -AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTA-AGACAGTAGGATCAGCAGCACGC
* * * * * *
13292578 AGGGGGGATCGGGCCTATCCCTGACTTACGCATTCTGCCTCTCCGGTCAGCTGAGCCCCCGTACG
128 AGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCCGTCAGCTGAGCCCCCGCACG
*
13292643 CCGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAG
193 CCGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAATGAG
* * *
13292708 GGTTATGGCAGCAGCACCGACAGCACGTAGAGGGGGAACAGGTCGATCCTCGGCTTGCGCATTAT
258 GGTTATGGCAGCAGCACCGACAGCACGCAGAGGGGGAACAGGCCGATCCTCGGCTTACGCATTAT
*
13292773 GCCTATCCGGCCGGCTCAGCG
323 GCCTATCCGGCCGGCTCAGCA
* * * *
13292794 CCCGTACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
13292851 ATCAGATCGG
Statistics
Matches: 336, Mismatches: 58, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
342 2 0.01
343 328 0.98
344 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTAAGACAGTAGGATCAGCAGCACGCAGG
GGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCCGTCAGCTGAGCCCCCGCACGCCG
GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAATGAGGGT
TATGGCAGCAGCACCGACAGCACGCAGAGGGGGAACAGGCCGATCCTCGGCTTACGCATTATGCC
TATCCGGCCGGCTCAGCA
Found at i:13292809 original size:159 final size:160
Alignment explanation
Indices: 13292577--13293011 Score: 454
Period size: 159 Copynumber: 2.7 Consensus size: 160
13292567 CGGCAGCACG
* * * * * * * * *
13292577 CAGGGGGGATC-GGGCCTATCCCTGACTTACGCATTCTGCCTCTCCGGTCAGCTGAGCCCCCGTA
1 CAGGGGGGAACAGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGTA
* *
13292641 CGC-CGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGAC
66 CGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGAC
* *
13292704 TGAGGGTTATGGCAGC-AGCACCGACAGCACGT
130 CGAGGGTTACGGCAGCAAG-ACCGACAGCA-GT
* * * * * *
13292736 -AGAGGGGGAACAGG-TCGATCCTCGGCTTGCGCATTATGCCTATCCGGCCGGCTCAGCGCCCGT
1 CAG-GGGGGAACAGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGT
* * * * * *
13292799 ACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGA
65 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGA
* * * *
13292862 CCGAGGGTTGCGGTAGCAAGATCGACAGCATT
129 CCGAGGGTTACGGCAGCAAGACCGACAGCAGT
* * * * *
13292894 CAGGGGGGGACCGGACCGATCCCCTACTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCACCCGCA
1 CAGGGGGGAACAGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGTA
*
13292959 CGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
66 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13293012 TATGGAGTTC
Statistics
Matches: 224, Mismatches: 42, Indels: 19
0.79 0.15 0.07
Matches are distributed among these distances:
158 18 0.08
159 197 0.88
160 9 0.04
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (160 bp):
CAGGGGGGAACAGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGTA
CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACC
GAGGGTTACGGCAGCAAGACCGACAGCAGT
Found at i:13293013 original size:26 final size:26
Alignment explanation
Indices: 13292983--13293035 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13292973 GTTGGCTTAG
13292983 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
13293009 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13293035 G
1 G
13293036 ATTTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13294090 original size:26 final size:26
Alignment explanation
Indices: 13294042--13294094 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13294032 GTTGACTTAT
*
13294042 GCATATGGAGATCATCCTTAGTCTAA
1 GCATATGGAGATCATCCTCAGTCTAA
*
13294068 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATATGGAGATCA-TCCTCAGTCTAA
13294094 G
1 G
13294095 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGATCATCCTCAGTCTAA
Found at i:13294328 original size:343 final size:343
Alignment explanation
Indices: 13293686--13294390 Score: 966
Period size: 343 Copynumber: 2.1 Consensus size: 343
13293676 CCCGCTCGCT
* *
13293686 TGGGTTGACTTAGGCATACGGAGTTCAGCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTATGCATACGGAGATCAGCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAA
* * * * *
13293751 GATTAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAAGGGGGACTGAACCGATCC
66 GATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAACACACAAGGGGGACTGAACCGAGCC
*
13293816 CTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCTGCACGCCCGTTTCATGGGTTGGCTT
131 CTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTT
* * * *
13293881 AGGCATAGGGAGTTCATTTCATATCTAAGCCCTAGCTGGACCGAGGATTGTGGTAGCAGGACCAG
196 AGGCATAGGAAGTTCATTCCATATCTAAGCCCCAGCTGGACCGAGGATTGTGGCAGCAGGACCAG
* * * *
13293946 CAACACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATACCTCTTCGGCCGGTTCAAC
261 CAACACACAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATACCTCTTCAGCCGGCTCAAC
*
13294011 ACCCGCACGCTCGTTTCG
326 ACCCGCACGCTCGTTTCA
* * ** *
13294029 TGGGTTGACTTATGCATATGGAGATCATCCTTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTATGCATACGGAGATCAGCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAA
* * * * * **
13294094 GATCAGATC-GAACCAAGGGTTGCGGTAGCAGGATCGGCAACACGCAGGGGGGACTGGGCCGAGC
66 GATCAGACCAG-ACCAAGGGTTGCGGCAGCAGGATCGACAACACACAAGGGGGACTGAACCGAGC
* * *
13294158 CTTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGTACGCCCGTTTCATGGGTTGGCT
130 CCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCT
* * * *
13294223 TAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGACC
195 TAGGCATAGGAAGTTCATTCCATATCTAAGCCCCAGCT-GGACCGAGGATTGTGGCAGCAGGACC
* * * * *
13294287 GGCAACATACAGAGGGGGATCGGGCTGA-CCCTCGACTTGCGCATTATGCCTCTTCAGCCGGCTC
259 AGCAACACACAGAGGGGGACCGGGCCGATCCCT-GACTTGCGCATTATACCTCTTCAGCCGGCTC
**
13294351 AATGCCCGCACGCTCGTTTCA
323 AACACCCGCACGCTCGTTTCA
*
13294372 TGGGTTGACTTATGAATAC
1 TGGGTTGACTTATGCATAC
13294391 CGAGTTCATT
Statistics
Matches: 314, Mismatches: 45, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
342 6 0.02
343 308 0.98
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
TGGGTTGACTTATGCATACGGAGATCAGCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAA
GATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAACACACAAGGGGGACTGAACCGAGCC
CTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTT
AGGCATAGGAAGTTCATTCCATATCTAAGCCCCAGCTGGACCGAGGATTGTGGCAGCAGGACCAG
CAACACACAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATACCTCTTCAGCCGGCTCAAC
ACCCGCACGCTCGTTTCA
Found at i:13294430 original size:159 final size:156
Alignment explanation
Indices: 13294068--13294570 Score: 523
Period size: 159 Copynumber: 3.2 Consensus size: 156
13294058 CTTAGTCTAA
*
13294068 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATCGAACCAAGGGTTGCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCG-ACCAAGGGTTGCGGTAGCAGGATCGGC
* * *
13294132 AACACGCAGGGGGGA-CTGGGCCGAGCCTTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTG
64 AACACGCAGGGGGGATC-GGGCCGACCCTCGACTTGCGCATTCTGCCTCTC-AGCCGGCTGAGTG
* *
13294196 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * * * * *
13294226 GCATA-GGAAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGG-AGTTCATTCCATGTCTAAG-ATCAGATC-GACCAAGGGTTGCGGTAGCAGGATCGG
** * * * *
13294289 CAACATACAGAGGGGGATCGGGCTGACCCTCGACTTGCGCATTATGCCTCTTCAGCCGGCTCAAT
63 CAACACGCAG-GGGGGATCGGGCCGACCCTCGACTTGCGCATTCTGCCTC-TCAGCCGGCTGAGT
* *
13294354 GCCCGCACGCTCGTTTCATGGGTTGACTTAT
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
13294385 GAATACCGAGTTCATTTCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGATC-GACCAAGGGTTGCGGTAGCAGGATCGGC
* * * * * * * *
13294449 AGCACGCAGGGGGGGATCGGGCCGGTCCC-CGGCTTGTGAATTCTGCCTCTCCGACTGGCTGAGC
64 AACACGCA-GGGGGGATCGGGCC-GACCCTCGACTTGCGCATTCTGCCTCTCAG-CCGGCTGAGT
*
13294513 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
13294544 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13294571 CATACGGAGT
Statistics
Matches: 278, Mismatches: 53, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
157 5 0.02
158 61 0.22
159 198 0.71
160 14 0.05
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGACCAAGGGTTGCGGTAGCAGGATCGGCAA
CACGCAGGGGGGATCGGGCCGACCCTCGACTTGCGCATTCTGCCTCTCAGCCGGCTGAGTGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13294580 original size:26 final size:26
Alignment explanation
Indices: 13294544--13294596 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13294534 GTTGGCTTAG
13294544 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13294570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13294596 G
1 G
13294597 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13294687 original size:11 final size:11
Alignment explanation
Indices: 13294667--13294699 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13294657 CCCAGGGCAC
13294667 CATCGTCGGAG
1 CATCGTCGGAG
*
13294678 CATCGCCGGAG
1 CATCGTCGGAG
13294689 CATCGTCGGAG
1 CATCGTCGGAG
13294700 AGCCTTACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13295301 original size:26 final size:26
Alignment explanation
Indices: 13295265--13295315 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13295255 GTTGACTTAG
*
13295265 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13295291 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
13295316 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13295806 original size:26 final size:26
Alignment explanation
Indices: 13295766--13295818 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13295756 CTTGGCTTAG
*
13295766 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
*
13295792 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
13295818 G
1 G
13295819 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:13296462 original size:379 final size:379
Alignment explanation
Indices: 13295717--13296465 Score: 959
Period size: 380 Copynumber: 2.0 Consensus size: 379
13295707 CGCATTCTGT
* * *
13295717 CTCTCCGGCCGACTGAGCACCCGCACGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGCTCATT
1 CTCTCCGGCCGACTGAGCACCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGCTCATC
* * * * *
13295782 CCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGTAGC
66 CCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGTAGC
* * * * * * * *
13295847 AAGACTAGCACAGGATTGATAGCACGTAAGGGGGACCGGGCCGATCCGCGACTTGCGCATTCTGC
131 AAGACCAACACAGAATCGACAGCACGCAAAGGGGACCGGGCCGATCCGCGACTTGCGCATTCTAC
* * * * *
13295912 CTCTCCGATTGGTTGAGCACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
196 CTCTCCGATAGGCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT
** *
13295977 CCATGTCTAAGCCCCAATTGGACCGAGGGTTATGGCAGTAGGACCGACAGCGGGATCGACAGCAC
261 CCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAGCAC
**
13296042 ACAGAGGGGGACCGGGTTGATCCTCGACTTACGCATTATGCCTCTTCGACTGGC
326 ACAGAGGGGGACCGGCCTGATCCTCGACTTACGCATTATGCCTCTTCGACTGGC
* ** * * *
13296096 CTCTTCGGCCGACTGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
1 CTCTCCGGCCGACTGAGCACCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGCTCATC
*
13296161 CC-TAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCAGTAG
66 CCAT-GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGTAG
* * *
13296225 CAAGACCAATAGCAGAATCGACAGCACGCAAAGGGGATCGGGCCGATCC-CTGGCTTGCGCATTC
130 CAAGACCAACA-CAGAATCGACAGCACGCAAAGGGGACCGGGCCGATCCGC-GACTTGCGCATTC
* * *
13296289 TACCTCTTCGGTAGGCTGAGCACCTGCACACTCATTTCGTGGGTTGGCTTAGGCATATC-AAGTT
193 TACCTCTCCGATAGGCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATA-CGAAGTT
* * ** * * * * *
13296353 CATTCCCTGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGTAGCAGGATCGACAGGGGGATCGATA
257 CATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACA
** *
13296418 GCACGTAGAGGGGGGCCGGCCTGATCC-CGACTTA-GCATTTATGCCTCT
322 GCACACAGAGGGGGACCGGCCTGATCCTCGACTTACGCA-TTATGCCTCT
13296466 CCACCAACTG
Statistics
Matches: 314, Mismatches: 51, Indels: 10
0.84 0.14 0.03
Matches are distributed among these distances:
378 4 0.01
379 138 0.44
380 171 0.54
381 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (379 bp):
CTCTCCGGCCGACTGAGCACCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGCTCATC
CCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGTAGC
AAGACCAACACAGAATCGACAGCACGCAAAGGGGACCGGGCCGATCCGCGACTTGCGCATTCTAC
CTCTCCGATAGGCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT
CCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAGCAC
ACAGAGGGGGACCGGCCTGATCCTCGACTTACGCATTATGCCTCTTCGACTGGC
Found at i:13297692 original size:380 final size:376
Alignment explanation
Indices: 13296955--13297826 Score: 984
Period size: 380 Copynumber: 2.3 Consensus size: 376
13296945 AACGCATTCT
* * *
13296955 GCCTCTCCGACCGGTTGAGCAACCGCACGCTCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * ** * *
13297020 TTCC-ATGTCTAAGCATACAAAGTTCATTCCTAGTCTAAGATCGGATCAGACTGAGGGTTGCGGC
66 TCCCTA-GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGC
* * * * * * * *
13297084 AGCAGGACTAGCACAGGATTGATAGCACGTATGGGGGACCGGGTCGATCCGCGGCTTGCGCATTC
130 AGCAAGACCAACACAGAATCGACAGCACGCATGGGGGACCGGGTCGATCCGCGGCTTACGCATTC
* * * * *
13297149 TGCCTCTCCGGCCGGTTGAGCACCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
195 TGCCTCTCCGGCAGGCTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTC
*** * * *
13297214 ATTCCAAGTCTAAGCCCCAGTTGGACAGAGGGTTGTGGTAGTAGGACTGACAGCGGGATCGGTAG
260 ATTCCAAGTCTAAGCCCCAACCGGACAGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGATAG
* ** *
13297279 CACACAGAGGGGGATCGGGTTGATCCTCGGCTTACGCATTATGCCTCTTCGA
325 CACACAGAGGGGGACCGGCCTGATCCCCGGCTTACGCATTATGCCTCTTCGA
* * *
13297331 TTGGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
1 ---GCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
13297396 TCATCCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCGGA-TCGAGGGTTGC
63 TCATCCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCAGACT-GAGGGTTGC
* * * *
13297460 AGTAGCAAGACCAATAGCAGAATCGGCAGCACGCA-GAGGGGATCGGGTCGATCC-CTGGCTTAC
127 AGCAGCAAGACCAACA-CAGAATCGACAGCACGCATG-GGGGACCGGGTCGATCCGC-GGCTTAC
* * * *
13297523 GCATTCTGCCTCTTCGGTAGGCTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACG
189 GCATTCTGCCTCTCCGGCAGGCTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACG
* * ** *
13297588 AAGTTCATTCCCTA-TCTAAGGCCCAACCGGATTGAGGGTTGTGGCAGCAGGA-TCGGCAGCGGG
254 AAGTTCATT-CCAAGTCTAAGCCCCAACCGGACAGAGGGTTGTGGCAGCAGGACT-GACAGCGGG
* *
13297651 ATCGATAGCACGCAGAGGGGGGCCGGCCTGATCCCCGGCTTACGCATTATGCCTCTTCGA
317 ATCGATAGCACACAGAGGGGGACCGGCCTGATCCCCGGCTTACGCATTATGCCTCTTCGA
* * *
13297711 ------CC-AAC---TGAGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
1 GCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *** * * * *
13297766 TCCCTGGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGC
66 TCCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGC
13297827 GACAGCAGGA
Statistics
Matches: 421, Mismatches: 64, Indels: 28
0.82 0.12 0.05
Matches are distributed among these distances:
367 98 0.23
368 1 0.00
370 1 0.00
371 2 0.00
378 1 0.00
379 123 0.29
380 192 0.46
381 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (376 bp):
GCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGCA
GCAAGACCAACACAGAATCGACAGCACGCATGGGGGACCGGGTCGATCCGCGGCTTACGCATTCT
GCCTCTCCGGCAGGCTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCA
TTCCAAGTCTAAGCCCCAACCGGACAGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGATAGC
ACACAGAGGGGGACCGGCCTGATCCCCGGCTTACGCATTATGCCTCTTCGA
Found at i:13297801 original size:26 final size:26
Alignment explanation
Indices: 13297752--13297804 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13297742 GTTGACTTAG
*
13297752 GCATATGGAGTTCATCCCTGGTCTAA
1 GCATATGGAGTTCATCCCTAGTCTAA
13297778 GCATATGGAGTTCATTCCC-AGTCTAA
1 GCATATGGAGTTCA-TCCCTAGTCTAA
13297804 G
1 G
13297805 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCTAGTCTAA
Found at i:13298279 original size:159 final size:158
Alignment explanation
Indices: 13297849--13298280 Score: 447
Period size: 159 Copynumber: 2.7 Consensus size: 158
13297839 GGTAGCTCGT
* * * * **
13297849 AGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGGTGAGTGCTTGCACG
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * * *
13297914 CCCGTTTCGTGGGTTCACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
66 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAG
* * * **
13297979 GGTTGTGGCAATAGGACTGGCAGCACGT
131 GGTTGTGGAAACAGGACTGACAGCACAC
* * * * * * *
13298007 AGAGGGGGACCGGGCTGATCCCCGGCTTGCGTATTATGCCTCT-TCGGTCGGCTCAACGCCCGCA
1 AG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCT-GGCCGGCTGAGCGCCCGCA
* * * * * *
13298071 CGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATCAAACCGGATC
64 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAAACCAGACC
*
13298135 GAGGGTTGT-GAAAGCAGGATTGACAGCACAC
128 GAGGGTTGTGGAAA-CAGGACTGACAGCACAC
* * * *
13298166 AGGGGGAGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGACCGACTGAGCGCCCGCAC
1 AGGGGG-GACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCAC
* * *
13298231 ACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
65 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
13298281 CATACGGAGT
Statistics
Matches: 218, Mismatches: 49, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
158 13 0.06
159 201 0.92
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAG
GGTTGTGGAAACAGGACTGACAGCACAC
Found at i:13298284 original size:26 final size:26
Alignment explanation
Indices: 13298254--13298306 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13298244 GTTGGCTTAG
13298254 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13298280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13298306 G
1 G
13298307 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13299024 original size:26 final size:26
Alignment explanation
Indices: 13298974--13299026 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13298964 GTTGACTTAG
*
13298974 GCATACGGAGTTCATCTGCCATCTAA
1 GCATACGGAGTTCATCTCCCATCTAA
*
13299000 GCATATGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCTCCCA-TCTAA
13299026 G
1 G
13299027 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCCATCTAA
Found at i:13299479 original size:158 final size:156
Alignment explanation
Indices: 13299000--13299532 Score: 552
Period size: 158 Copynumber: 3.4 Consensus size: 156
13298990 TGCCATCTAA
* ** * *
13299000 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
13299065 GCACGCAGGGGGGA-CTGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGT-GGCTGAGCGC
65 GCACGCAAGGGGGATC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCAC
* * *
13299128 CCGCACGCCTGTTTTATGGGTTAGCTTAG
129 CCGCACGTC-GTTTCATGGGTTGGCTTAG
* ** * * * * *
13299157 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAACGGAGGGTTGTGGCAGCGGGATCGAT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * *
13299221 AGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTACGTATTATGCCAC-TCCAGCTGGCTCAGC
64 AGCACGCA-AGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC-GGCTGAGC
* *
13299285 ACCCGCATGCTCGTTTCATGGGTTGACTTAG
127 ACCCGCACG-TCGTTTCATGGGTTGGCTTAG
* * *
13299316 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
13299381 GCACGCATGGGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACC
65 GCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACC
* *
13299446 CGTACGTTCGTTTCGTGGGTTGGCTTAG
130 CGCACG-TCGTTTCATGGGTTGGCTTAG
* *
13299474 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGA
13299533 GCGGTAACAG
Statistics
Matches: 302, Mismatches: 63, Indels: 21
0.78 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 58 0.19
158 150 0.50
159 85 0.28
160 6 0.02
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCC
GCACGTCGTTTCATGGGTTGGCTTAG
Found at i:13300142 original size:158 final size:157
Alignment explanation
Indices: 13299906--13300365 Score: 464
Period size: 158 Copynumber: 2.9 Consensus size: 157
13299896 GACTGGACTA
* * **
13299906 AGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGGACCGGG-CTGATCCCTAGCTTGCGCATT
1 AGGGTTGCGGCACCAGGATCGACAGCACGCAGGGGGGACCGGGTC-GATCCC-AGCTTGCGCATT
** *
13299970 CTACCTCTCCGGCCGGCTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
64 CTACCTCTTAGGCCGGCTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATATGGAGTT
*
13300035 CATTCCTTGTCTAAGCCCTAG-TCAGATCG
129 CATTCCTTGTCTAAGCCC-AGACCAGATCG
* * *
13300064 AGGGTTGTGGCA-CAGGATCGACAGCACGCAGAGGGGGACCGGGTCAATCCCCGCCTTGCGCATT
1 AGGGTTGCGGCACCAGGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCCAG-CTTGCGCATT
* * * * ** * *
13300128 ATGCCTCTTAGGCCGGCTCAGTGCCCGCACG-CTCGTTTTTTGGGTTGACTTATGCATATGGAGT
64 CTACCTCTTAGGCCGGCTGAGCGCCCGCACGTC-CGTTTCATGGGTTGGCTTAGGCATATGGAGT
* * ** *
13300192 TCATTCCTAGTGTAAGATCAGACCGGATCG
128 TCATTCCTTGTCTAAGCCCAGACCAGATCG
* * * * * *
13300222 AGGGTTGCGGTAGCCA-GATTGACAGCACGTAGGGGGCATCGGGTCGATCCCTGACTTGCGCATT
1 AGGGTTGCGGCA-CCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCAG-CTTGCGCATT
* * * * * * *
13300286 CTACCTTTTTGGCCGACTGAGCACCCGCACGTTCGTTTCGTGGGTT-GCTTAGGCATATAGAGTT
64 CTACCTCTTAGGCCGGCTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATATGGAGTT
*
13300350 CATTCCATGTCTAAGC
129 CATTCCTTGTCTAAGC
13300366 AAACAGAGTT
Statistics
Matches: 244, Mismatches: 50, Indels: 17
0.78 0.16 0.05
Matches are distributed among these distances:
157 48 0.20
158 179 0.73
159 15 0.06
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (157 bp):
AGGGTTGCGGCACCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCAGCTTGCGCATTCT
ACCTCTTAGGCCGGCTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCA
TTCCTTGTCTAAGCCCAGACCAGATCG
Found at i:13307478 original size:157 final size:157
Alignment explanation
Indices: 13307001--13307500 Score: 505
Period size: 159 Copynumber: 3.2 Consensus size: 157
13306991 CCCAGTCTAA
* * * * * * * *
13307001 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACTGGACCGAGGGTTGCTGCAGTAGGATCGAC
* * * * *
13307065 AGCA-CATGGAGGGGACCGGGCCAATCCCGACTTGCGGATTCTGCCTCCCCGATCGACCGAGCGC
66 AGCAGCA-GGA-GGGATCGGGCCAATCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
* *
13307129 CCGCACGCCCATTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * *
13307158 GCGTAGGGAGTTCATT-CTATGTCTAAGCCCCAGTC-GGACCGAGGGTTG-TGGCAGTGGGATCG
1 GCATACGGAGTTCATTCCTATGTCTAAG-ATCAGACTGGACCGAGGGTTGCT-GCAGTAGGATCG
* *** * * * ** *
13307220 ACAGCAGGCAGAGCGGGATCGGGTTGATGCTCGGCTTGCGCATTATGCGTCTCCGGCCGACTCAG
64 ACAGCA-GCAG-GAGGGATCGGGCCAAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAG
* *
13307285 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
126 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
13307317 GCATACCGAGTTCATTCCTA-GTCTAAGATCGGACTGGACCGAGTGTTGCTCCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACTGGACCGAGGGTTGCTGCAGTAGGATCGAC
*
13307381 AGCACGCAGG-GTGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCG-CTGAGCG
66 AGCA-GCAGGAG-GGATCGGGCCAAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCG
13307444 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
13307474 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTATGTCTAAG
13307501 CATACAGAGT
Statistics
Matches: 274, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 105 0.38
158 53 0.19
159 109 0.40
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTATGTCTAAGATCAGACTGGACCGAGGGTTGCTGCAGTAGGATCGAC
AGCAGCAGGAGGGATCGGGCCAATCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13307504 original size:26 final size:26
Alignment explanation
Indices: 13307474--13307526 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13307464 GTTGGCTTAG
*
13307474 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13307500 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13307526 G
1 G
13307527 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13308193 original size:158 final size:158
Alignment explanation
Indices: 13307931--13308676 Score: 694
Period size: 159 Copynumber: 4.8 Consensus size: 158
13307921 GATCGGCAGA
* *
13307931 ACGCA-GGGGGAC-GGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCT
1 ACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCC-
* *
13307993 ACAC-C-CATTT-GT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
65 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
13308054 CCGAGGGTTGTGGCAGCGGGATCTG-CAAC
130 CCGAGGGTTGTGGCAGCGGGA-CTGACAAC
* * * *
13308083 ACGCAGGGGGGACTGAGCCGATCCCTGGCTTGCGTATTCTACCTCTCCAGCCGGCTGAGCACCCG
1 ACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
* * * * *
13308148 CATGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCTAGTCGGA-
66 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* *
13308212 CGAAGGGTTGTGGCAGCGGGACCGACAGC
131 CG-AGGGTTGTGGCAGCGGGACTGACAAC
* * * * ** * * *
13308241 ACACAGAGGGGGA-TCGGGCTGATCCCTGGTTTGCGCATTATGCCTCTTTGGCCTGCTCAGCCCC
1 ACGCAG-GGGGGACT-GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
* * * **
13308305 CGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACC
64 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CC
** * * * *
13308368 AAACCGAGGGTTGCGACAGCAGGA-TCGACAGC
127 GGACCGAGGGTTGTGGCAGCGGGACT-GACAAC
* *** * * * * *
13308400 ACGAAGGGGGGACTGGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGGTTGAACGCCCG
1 ACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
* * * * * * *
13308465 CATGCTCGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTATGCCCCAACCGGAT
66 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * *
13308530 TGAGGGTTGTGGTAGCGAGACT-AGCAAC
131 CGAGGGTTGTGGCAGCGGGACTGA-CAAC
* ** * * * *
13308558 ACGCAGAGGGGGACCGGGCCGATCCCTAACTTACGCATTATGCCTCTCCGGCCGGCTCAACACCC
1 ACGCAG-GGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCC
* * * * * *
13308623 GCACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTTATCCCA-GTCTAAGC
65 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13308677 ATACAGAGTT
Statistics
Matches: 476, Mismatches: 97, Indels: 36
0.78 0.16 0.06
Matches are distributed among these distances:
152 5 0.01
153 7 0.01
154 11 0.02
155 35 0.07
156 5 0.01
157 7 0.01
158 195 0.41
159 209 0.44
160 2 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
ACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
CGAGGGTTGTGGCAGCGGGACTGACAAC
Found at i:13308597 original size:317 final size:316
Alignment explanation
Indices: 13307935--13308677 Score: 766
Period size: 317 Copynumber: 2.4 Consensus size: 316
13307925 GGCAGAACGC
* ** * * * * * *
13307935 AGGGGGA-CGGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCC-TACAC
1 AGGGGGACCGGGCCGATCCCTAACTTACGCATTATGCCTCTCCGGCCGGCTCAACACCCGCACAC
* * * * * **
13307997 CCATTT-GT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
66 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGCCAAACCGAGG
* * * * *** * *
13308060 GTTGTGGCAGCGGGATCTGCAACACGCAGGGGGGACTGAGCCGATCCCTGGCTTGCGTATTCTAC
130 GTTGCGACAGCAGGATCTGCAACACGAAGGGGGGACTGAGCCGATCCCCAACTTACGCATTCTAC
* * **
13308125 CTCTCCAGCCGGCTGAGCACCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGATCATT
195 CTCTCCAGCCGGCTGAACACCCGCATGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGATCATT
* ** * * *
13308190 CCATGTCTAAGCCCTAGTCGGACGAAGGGTTGTGGCAGCGGGACCGACAGCACACAG
260 CCATGTCTAAGCCCCAACCGGACGAAGGGTTGTGGCAGCGAGACAGACAACACACAG
* * *** * ** * * * *
13308247 AGGGGGATCGGGCTGATCCCTGGTTTGCGCATTATGCCTCTTTGGCCTGCTCAGCCCCCGCACGC
1 AGGGGGACCGGGCCGATCCCTAACTTACGCATTATGCCTCTCCGGCCGGCTCAACACCCGCACAC
* * * *
13308312 TCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACCAAACCGAG
66 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCACCAG-CCAAACCGAG
* *
13308376 GGTTGCGACAGCAGGATC-GACAGCACGAAGGGGGGACTGGGCCGATCCCCAACTTACGCATTCT
129 GGTTGCGACAGCAGGATCTG-CAACACGAAGGGGGGACTGAGCCGATCCCCAACTTACGCATTCT
* * * * * * *
13308440 GCCTCTCCGGTCGGTTGAACGCCCGCATGCTCGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCA
193 ACCTCTCCAGCCGGCTGAACACCCGCATGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGATCA
* * * *
13308505 TTCCATGTCTATGCCCCAACCGGATTG-AGGGTTGTGGTAGCGAGACTAG-CAACACGCAG
258 TTCCATGTCTAAGCCCCAACCGGA-CGAAGGGTTGTGGCAGCGAGAC-AGACAACACACAG
13308564 AGGGGGACCGGGCCGATCCCTAACTTACGCATTATGCCTCTCCGGCCGGCTCAACACCCGCACAC
1 AGGGGGACCGGGCCGATCCCTAACTTACGCATTATGCCTCTCCGGCCGGCTCAACACCCGCACAC
* * *
13308629 TCATTTCATGGGTTGACTTAGGCATATGGAGTTTATCCCAGTCTAAGCA
66 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCA
13308678 TACAGAGTTC
Statistics
Matches: 349, Mismatches: 71, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
312 7 0.02
313 10 0.03
314 30 0.09
315 7 0.02
316 14 0.04
317 278 0.80
318 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (316 bp):
AGGGGGACCGGGCCGATCCCTAACTTACGCATTATGCCTCTCCGGCCGGCTCAACACCCGCACAC
TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGCCAAACCGAGGG
TTGCGACAGCAGGATCTGCAACACGAAGGGGGGACTGAGCCGATCCCCAACTTACGCATTCTACC
TCTCCAGCCGGCTGAACACCCGCATGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGATCATTC
CATGTCTAAGCCCCAACCGGACGAAGGGTTGTGGCAGCGAGACAGACAACACACAG
Found at i:13314949 original size:26 final size:26
Alignment explanation
Indices: 13314919--13314971 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13314909 GTTGACTTAG
13314919 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13314945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13314971 G
1 G
13314972 AATAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13315866 original size:26 final size:26
Alignment explanation
Indices: 13315836--13315887 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13315826 TTGACTTAGG
*
13315836 GCATATGTAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
13315862 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
13315888 TATCAAACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:13316541 original size:26 final size:26
Alignment explanation
Indices: 13316511--13316561 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13316501 TGACTTAGGT
13316511 ATATGAAGTTCATCCCCAGTCTAAGC
1 ATATGAAGTTCATCCCCAGTCTAAGC
* *
13316537 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGAAGTTCATCCCCAGTCTAAG
13316562 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATATGAAGTTCATCCCCAGTCTAAGC
Found at i:13317222 original size:26 final size:26
Alignment explanation
Indices: 13317192--13317252 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
13317182 GTTGACTTAG
13317192 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* * * *
13317218 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
13317244 G-AT-CGGACT
1 GCATACGGACT
13317253 AGAGGAAGGG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:13317396 original size:683 final size:688
Alignment explanation
Indices: 13316491--13318109 Score: 1755
Period size: 683 Copynumber: 2.3 Consensus size: 688
13316481 TGCACACTCG
* * *
13316491 TTTCATGGGTTGACTTAGGTATATGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
* * * * *
13316556 TCTAAGATCGGA-TCGGGTCGAGGGTTACGACAGCAGGATCGACAGCACGCAAGGGGGATCGAGC
66 TCTAAGATCGGACTAGAG--GAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGATCGAGC
* * * *
13316620 CGAT-CCTCGACTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCACCCACACGCCCGTTTCGTGGG
129 CGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGG
* *
13316684 CTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG-AATCGAGGGTTATGGCAGT
193 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAAT-GAGGGTTATGGCAGC
* * *
13316748 AGGACCGATAGCACACAGAGGGGGATCGAG-TCGATCCCCAGCTTGTGCATTATGCCTCTCCAAC
257 AGGACCGACAGCACACAGAGGGGGACCG-GCT-GATCCCCAGCTTGCGCATTATGCCTCTCCAAC
* ***
13316812 CGGCTT-AGTGCCCG-AATGCTCATTTCATGGGTTGACTTAGACATATGGAGTTCATTCCCAGTC
320 C-GATTCAGTG-CCGTAAT-CTCATTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTC
* * * * * * * *
13316875 TAAGATCGGACTGGATCGAGTGTTGTGGTAGCAACATCTATAGCTCATAAG-GGGGATCGGG-C-
382 TAAGATCAGACTGGACCGAGGGTTGTGGCAGCAACATCGAAAGCAC-GAAGAGGGGATCGGGTCA
* * *
13316937 CT-CTC-C-G-A-CTG-G-C-TGAGCACCCGCA-CGTTTCGTGGGTTGGCTTAGGCATGCAGAGT
446 CTCCTCGCTGCATCTGCGCCGTGAGCACCCGCATCATTTCATGGGTTGGCTTAGGCATACAGAGT
* * *
13316993 TCATTCCATATCTAAGCATAGAGAGTTCATTCCCAATCTAAGATCAAACCAAACCAAGGTTTACA
511 TCATTCCATATCTAAGCATAAAAAGTTCATTCCCAATCTAAGATCAAACCAAACCAAGCTTTACA
* *
13317058 GCAGTAGGACCAATAGCAGGATCGATAGCACACAGGGGGGAAGCGGGCCAATCCCCAGCTTGCGC
576 GCAGTAGGACCAATAGCAGGATCGATAGCACACAGGGGGG-ACCGGGCCAAT-CCCAGCTTGAGC
** * ** * * ** * * *
13317123 ATTCTGCCTCTTTGGCTGGCATTTTTGGTTGGCTAAGCGCCCGCACGTTCA
639 ATTCTGCCTCTCCGACCAGC-CTCTCCGTCGGCTAAGCGCCCGAACGCTCA
* *
13317174 TTTCATGGGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
* * *
13317239 TCTAAGATCGGACTAGAGGAAGGGTTGCGATAGCAGGATCGATAGCATGCAGGGGGGACCGAGCC
66 TCTAAGATCGGACTAGAGG-AGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGATCGAGCC
* *
13317304 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTAGCTGAGCGCCCGCATGCCCGTTTCGTGGGTT
130 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
* * * *
13317369 GGCTTAGGCATAGGGCGTTCATTCCATGTCTAAGCCCCAGTCGAAATGAGGGTTGTGGCAGCGGG
195 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAATGAGGGTTATGGCAGCAGG
** ** * ***
13317434 ACCGACAGCACGTAGAGGGGGACCGGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGGTCGATT
260 ACCGACAGCACACAGAGGGGGACCGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAACCGATT
* * * *
13317499 CAGTGCCGTACTCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCA
325 CAGTGCCGTAATCTCATTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTCTAAGATCA
* * *
13317564 GACTGGACCGAGGGTTGTGGCAGCAAGATCGAAAGCACGCAGAGGGGATCGGGTCAGTCCTCGGC
390 GACTGGACCGAGGGTTGTGGCAGCAACATCGAAAGCACGAAGAGGGGATCGGGTCACTCCTC-GC
*
13317629 TTGTGCATTCTGCCTCTCCAGCCGGTTGAGCGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCA
454 ---TGCA-TCTG------C-GCC-G-TGAGCACCCGCA---TCATTTCATGGGTTGGCTTAGGCA
* * * ** * *
13317694 TACAGAGTTCATTCCATGTCTAAGCATAAAAAGTTCATTCCTAGTCTAAGATCGGACCGAACCGA
503 TACAGAGTTCATTCCATATCTAAGCATAAAAAGTTCATTCCCAATCTAAGATCAAACCAAACCAA
* * * * * ** * **
13317759 GCTTTACGGTAGTAGGACCAGTAGCAGGATTGGTAGCACGTAGGGGGGACCGGGTCAATCCTGGC
568 GCTTTACAGCAGTAGGACCAATAGCAGGATCGATAGCACACAGGGGGGACCGGGCCAATCCCAGC
* * ** * *
13317824 TTGAGCATTCTGTCTCTCCGACCAGCCTCTCCGTCGGTTTCGTGCCCGAACGCTCG
633 TTGAGCATTCTGCCTCTCCGACCAGCCTCTCCGTCGGCTAAGCGCCCGAACGCTCA
13317880 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
* * * * * **
13317945 TCTAAGATCGAACTGGATCGAGTGTTGTCG-CAGCAGTATCGATAGCACGTGGGGGGGATCGAGC
66 TCTAAGATCGGACTAGA-GGAGGGTTG-CGACAGCAGGATCGATAGCACGCAGGGGGGATCGAGC
** * ** ** * *
13318009 CGATCCCCAGCTTACGCATTCTGCCTCTCCGATTGGCTGAATGCCCGCACGCTCGTTTCATGGGT
129 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
* *
13318074 TGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGC
194 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13318110 ATACAGAGTT
Statistics
Matches: 773, Mismatches: 125, Indels: 53
0.81 0.13 0.06
Matches are distributed among these distances:
680 2 0.00
681 93 0.12
682 35 0.05
683 244 0.32
684 12 0.02
686 1 0.00
690 1 0.00
691 1 0.00
693 3 0.00
701 1 0.00
702 1 0.00
705 11 0.01
706 217 0.28
707 26 0.03
708 9 0.01
709 116 0.15
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (688 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
TCTAAGATCGGACTAGAGGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGATCGAGCCG
ATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAATGAGGGTTATGGCAGCAGGA
CCGACAGCACACAGAGGGGGACCGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAACCGATTC
AGTGCCGTAATCTCATTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTCTAAGATCAG
ACTGGACCGAGGGTTGTGGCAGCAACATCGAAAGCACGAAGAGGGGATCGGGTCACTCCTCGCTG
CATCTGCGCCGTGAGCACCCGCATCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATA
TCTAAGCATAAAAAGTTCATTCCCAATCTAAGATCAAACCAAACCAAGCTTTACAGCAGTAGGAC
CAATAGCAGGATCGATAGCACACAGGGGGGACCGGGCCAATCCCAGCTTGAGCATTCTGCCTCTC
CGACCAGCCTCTCCGTCGGCTAAGCGCCCGAACGCTCA
Found at i:13317630 original size:157 final size:158
Alignment explanation
Indices: 13317225--13317717 Score: 369
Period size: 158 Copynumber: 3.1 Consensus size: 158
13317215 TAAGCATATG
* * * * ** * * * *
13317225 AAGTTCATTCCCA-GTCTAAGATCGGACTAGA-GGAAGGGTTGCGATAGCAGGATCGATAGCATG
1 AAGTTCATT-CCATGTCTAAGATCAGACTGGACCG-AGGGTTGTGGCAGCAAGACCGAAAGCACG
* * * * *
13317288 CAG-GGGGGACCGAGC-CGATCCCTGGCTTGCGCATTCTGCCTCTCC-GGCTAGCTGAGCGCCCG
64 CAGAGGGGGACCG-GCTC-ATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGA-TTCAGCGCCCG
* * * * **
13317350 CATGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
126 CATGCTCATTTCATGGGTTGACTTAGGCATACA
** ** * * ** ** * *
13317383 GCGTTCATTCCATGTCTAAGCCCCAGTC-GAAATGAGGGTTGTGGCAGCGGGACCGACAGCACGT
1 AAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGCAAGACCGAAAGCACGC
* * * * * *
13317447 AGAGGGGGACCGGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGGTCGATTCAGTG-CCGTACT
65 AGAGGGGGACCGGCTCATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGATTCAGCGCCCGCA-T
* *
13317511 -CTCGTTTCGTGGGTTGACTTAGGCATACA
129 GCTCATTTCATGGGTTGACTTAGGCATACA
*
13317540 AAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATCGAAAGCACGC
1 AAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGACCGAAAGCACGC
* * * * * *
13317604 AGA-GGGGATCGGGTCAGT-CCTCGGCTTGTGCATTCTGCCTCTCCAGCCGGTTGAGCGCCCGCA
65 AGAGGGGGACCGGCTCA-TCCCT-GGCTTGCGCATTATGCCTCTCCAGCCGATTCAGCGCCCGCA
*
13317667 TGCTCATTTCATGGGTTGGCTTAGGCATACA
128 TGCTCATTTCATGGGTTGACTTAGGCATACA
*
13317698 GAGTTCATTCCATGTCTAAG
1 AAGTTCATTCCATGTCTAAG
13317718 CATAAAAAGT
Statistics
Matches: 262, Mismatches: 59, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
156 17 0.06
157 109 0.42
158 120 0.46
159 16 0.06
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
AAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGACCGAAAGCACGCA
GAGGGGGACCGGCTCATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGATTCAGCGCCCGCATGC
TCATTTCATGGGTTGACTTAGGCATACA
Found at i:13317928 original size:26 final size:26
Alignment explanation
Indices: 13317898--13317950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13317888 GTTGACTTAG
13317898 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13317924 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13317950 G
1 G
13317951 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13318118 original size:26 final size:26
Alignment explanation
Indices: 13318084--13318134 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13318074 TGGCTTAGGA
*
13318084 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
13318110 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13318135 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:13318322 original size:26 final size:26
Alignment explanation
Indices: 13318292--13318351 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
13318282 GTTGACTTAG
*
13318292 GCATATGGACTTCA-TCCTCAGTCTAA
1 GCATACGGACTTCATTCC-CAGTCTAA
*
13318318 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
13318344 G-AT-CGGAC
1 GCATACGGAC
13318352 CAGACTAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 21 0.70
27 3 0.10
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:13318469 original size:394 final size:388
Alignment explanation
Indices: 13317541--13318503 Score: 1052
Period size: 391 Copynumber: 2.5 Consensus size: 388
13317531 AGGCATACAA
* ** * * *
13317541 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATCGAAAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGACTGGACTAAAGGTTGCGGCAGCAGGATCGAAA-CACGCAG
* * ** * *
13317606 AGGGGATCGGGTC-AGTCCTCGGCTTGTGCATTCTGCCTCTCCAGCCGGTTGAGCGCCCGCATGC
65 -GGGGATCGAGTCGA-TCCCCGGCTTACGCATTCTGCCTCT-CAGCCGGCTGAGCGCCCGCACGC
* *
13317670 TCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAAAAAGTTCATTCC
127 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAAAAGTTCATTCC
* * * * * **
13317735 TAGTCTAAGATCGGACCGAACCGAGCTTTACGGTAGTAGGACCAGTAGCAGGATTGGTAGCACGT
192 CAGTCTAAGATCGGACCGAACCGAGCTTTACGATAGCAGGACCAGCAGCAGGATCGGTAGCACAC
* * ** * * * * **
13317800 AGGGGGGACCGGGTCAATCCTGGCTTGAGCATTCTGTCTCTCCGACCAGCCTCTCCGTCGGTTTC
257 AGGGGGAACCGGGCCAATCCCAGCTTGAGCATTCTGCCTCTCCGACCAGCATCTCAGTCGGCTAA
** * * *
13317865 GTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAT
322 GCACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAAGCATAC
13317930 GG
387 GG
* ** * *
13317932 AGTTCATTCCCAGTCTAAGATCGAACTGGA-TCGAGTGTTGTC-GCAGCAGTATCGATAGCACGT
1 AGTTCATTCCCAGTCTAAGATCGGACTGGACTAAAG-GTTG-CGGCAGCAGGATCGA-AACACG-
** * * * ** **
13317995 GGGGGGGATCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATTGGCTGAATGCCCGCACG
62 CAGGGGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCAG-CCGGCTGAGCGCCCGCACG
* * *
13318060 CTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
126 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAAAAGTTCATTC
* * *
13318125 CCAGTCTAAGATCGGATCGAACCGAGGTTTACGATAGCAGGACCAGCAGTAGGATCGGTAGCACA
191 CCAGTCTAAGATCGGACCGAACCGAGCTTTACGATAGCAGGACCAGCAGCAGGATCGGTAGCACA
* * * * * ** * *
13318190 CAGGGGAGAAGCGTGCCAATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCATTTCTAGTTGG
256 CAGGGG-GAACCGGGCCAAT-CCCAGCTTGAGCATTCTGCCTCTCCGACCAGCATCTC-AGTCGG
* * *
13318255 CTAAGCACCC-ACACGTTCATTTCATGGGTTGACTTAGGCATATGGACTTCATCCTCAGTCTAAG
318 CTAAGCACCCGA-ACGCTCATTTCATGGGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAAG
13318319 CATACGG
382 CATACGG
** *
13318326 AGTTCATTCCCAGTCTAAGATCGGACCAGACTAAAGGTTGCGGTAGCAGGATCGACAACACGCAA
1 AGTTCATTCCCAGTCTAAGATCGGACTGGACTAAAGGTTGCGGCAGCAGGATCGA-AACACGC-A
* * * * *
13318391 GGGGGATCGAGTCGATCCCCGGCTTACGCATTCTACCTTTCTAGCCGACTGAGCGCCCGTACGCC
64 GGGGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTC-AGCCGGCTGAGCGCCCGCACGCT
* *
13318456 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13318504 CCCAGTCAGA
Statistics
Matches: 465, Mismatches: 93, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
390 3 0.01
391 212 0.46
392 12 0.03
393 29 0.06
394 205 0.44
395 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (388 bp):
AGTTCATTCCCAGTCTAAGATCGGACTGGACTAAAGGTTGCGGCAGCAGGATCGAAACACGCAGG
GGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCAGCCGGCTGAGCGCCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAAAAGTTCATTCCCAGT
CTAAGATCGGACCGAACCGAGCTTTACGATAGCAGGACCAGCAGCAGGATCGGTAGCACACAGGG
GGAACCGGGCCAATCCCAGCTTGAGCATTCTGCCTCTCCGACCAGCATCTCAGTCGGCTAAGCAC
CCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAAGCATACGG
Found at i:13318796 original size:158 final size:159
Alignment explanation
Indices: 13318318--13318819 Score: 518
Period size: 158 Copynumber: 3.2 Consensus size: 159
13318308 CTCAGTCTAA
* * * * * *
13318318 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAAGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGTGGCAGTAGGATCGACA
* * * * * * * **
13318383 ACACGCA-AGGGGGA-TCGAGTCGATCCCCGGCTTACGCATTCTACCT-TTCTAGCCGACTGAGC
66 GCACACAGAGGGGGACT-GGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GGCCGGTTGAGC
* *
13318445 GCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
13318476 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGAATAAGGGTTGTGGCAGCTA-GACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACTAAGGGTTGTGGCAG-TAGGATCG
* * * * * * *
13318538 ACAGCACATAGAGGGGGACCGGG-CTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCAGTTCA
63 ACAGCACACAGAGGGGGACTGGGTC-GATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGA
* *
13318602 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
127 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13318635 GCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGTGGCAGTAGGATCGACA
* **
13318700 GCACACAGA-GGGGACTGGGTCGATCCCTGACTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCAT
66 GCACACAGAGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCGC
* *
13318764 CCGCATGCTCGTTTCATGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13318793 GCATATGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13318820 CATATAGAGT
Statistics
Matches: 277, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.02
158 145 0.52
159 121 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGTGGCAGTAGGATCGACA
GCACACAGAGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13318823 original size:26 final size:26
Alignment explanation
Indices: 13318793--13318845 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13318783 GTTGGCTTAG
*
13318793 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
13318819 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
13318845 G
1 G
13318846 ATTGGATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:13319317 original size:158 final size:159
Alignment explanation
Indices: 13319064--13319372 Score: 460
Period size: 158 Copynumber: 1.9 Consensus size: 159
13319054 AGATCGTACT
* * * *
13319064 GGACCGAGGGTTATAGCAGCAGGATCGGCAGCACATAAGGGGGATCGGGCTGATCCCCAGCTTGC
1 GGACCGAGGGTTATAGCAGCAGGATCAGCAGCACACAAGGGGGATCGGACCGATCCCCAGCTTGC
* * *
13319129 GCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
13319194 GAGTTCATTCCATGTGTAAGCCCCAGCCA
131 GAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * *
13319223 GGACCGAGGGTTATGGCAGCGGGATCAG-AGCACACAGAGGGGGA-CGGACCGATCCTCGGCTTG
1 GGACCGAGGGTTATAGCAGCAGGATCAGCAGCACACA-AGGGGGATCGGACCGATCCCCAGCTTG
* * *
13319286 CGCATTCTGCCTTTCCGACTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
65 CGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
13319351 GGAGTTCATTCCATGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
13319373 ATATGGAGTT
Statistics
Matches: 134, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
158 102 0.76
159 32 0.24
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (159 bp):
GGACCGAGGGTTATAGCAGCAGGATCAGCAGCACACAAGGGGGATCGGACCGATCCCCAGCTTGC
GCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:13320109 original size:26 final size:26
Alignment explanation
Indices: 13320079--13320131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13320069 GTTAACTTAG
13320079 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13320105 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13320131 G
1 G
13320132 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13320578 original size:158 final size:158
Alignment explanation
Indices: 13320105--13320605 Score: 548
Period size: 159 Copynumber: 3.2 Consensus size: 158
13320095 CCCAGTCTAA
* * * *
13320105 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGATCGAGGGTGGCGGCAGCAGGATC-AG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGATCGAGGGTTGTGGCAGCAGGATCGA-
* * * * *
13320168 CAGCACGTA-GGGGGACC-AGGCCGATCCCTGGCTTACGCATTCAGCCTCTCCGGTCGGCTGAGC
64 CAGCACGTAGGGGGGACCGAGG-TGATCCCCGGCTTACGCATTCTGCCTCTCCGATAGGCTGAGC
* *
13320231 ACCCGCTCGCCCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * ** *
13320262 GCATAGGGAGTTCATTCCATGTATAAGCCCTAGCCGGATCGAGGGTTGTGGCAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGATCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
13320327 GTACGTAGAGGGGGACTG-GATCGATCCTCGGCTTACGCATTATGCCTCTCCGGCTA-GCTCAGC
66 GCACGTAG-GGGGGACCGAGGT-GATCCCCGGCTTACGCATTCTGCCTCTCC-GATAGGCTGAGC
* * *
13320390 ACCCGCACGCTCATTTCATGGGTTGACTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13320421 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGATCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
13320485 AACACGTAGGGGGGACCGAGGTGATCCCCGACTTGCGCATTCTGCCTCTCCGATAGGCTGAGCGC
65 AGCACGTAGGGGGGACCGAGGTGATCCCCGGCTTACGCATTCTGCCTCTCCGATAGGCTGAGCAC
13320550 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
13320579 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13320606 CATATGGAGT
Statistics
Matches: 276, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 57 0.21
158 90 0.33
159 121 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGAGGTGATCCCCGGCTTACGCATTCTGCCTCTCCGATAGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13320629 original size:26 final size:26
Alignment explanation
Indices: 13320579--13320631 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13320569 GTTGGCTTAG
*
13320579 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13320605 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13320631 G
1 G
13320632 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13320736 original size:184 final size:184
Alignment explanation
Indices: 13320421--13320816 Score: 497
Period size: 184 Copynumber: 2.2 Consensus size: 184
13320411 GTTGACTTAG
** *
13320421 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAAGATCGACA
* * * * *
13320486 ACACGTAGGGGGGACCGAGGTGATCCCCGACTTGCGCATTCTGCCTCTCCGATAGGCTGAGCGCC
66 ACACGCAGGGGGGACCAAGCTAATCCCCGACTTGCACATTCTGCCTCTCCGATAGGCTGAGCGCC
* * * *
13320551 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
131 CGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
* * * * * * *
13320605 GCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAAGATCGACA
* * * * * * * *
13320670 GCATGCAGGGGGGGCCAAGCTAATCCTCGGCTTGCACATTCTGCCTCTCTGGTCGGCTGAGCGCC
66 ACACGCAGGGGGGACCAAGCTAATCCCCGACTTGCACATTCTGCCTCTCCGATAGGCTGAGCGCC
** *
13320735 CGCTTGCTCATTTCTTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
131 CGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
*
13320789 GCATACAGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
13320817 GTTTGAGCCA
Statistics
Matches: 178, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
184 175 0.98
185 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAAGATCGACA
ACACGCAGGGGGGACCAAGCTAATCCCCGACTTGCACATTCTGCCTCTCCGATAGGCTGAGCGCC
CGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:13320799 original size:26 final size:26
Alignment explanation
Indices: 13320763--13320815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13320753 GTTGACTTAG
*
13320763 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13320789 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13320815 G
1 G
13320816 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13321984 original size:158 final size:159
Alignment explanation
Indices: 13321485--13321986 Score: 453
Period size: 159 Copynumber: 3.2 Consensus size: 159
13321475 TCCAATCTAA
* *
13321485 GCATACAGAGTTCATTCACA-GTCTAAGATCAGATCAGACT-GAGGGTTGCGACTA-CAAGATCG
1 GCATACAGAGTTCATTC-CATGTCTAAGATCAAATC-GAATCGAGGGTTGCGA-TAGCAAGATCG
** ** * * *
13321547 GTAGCACGCA-GGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAG
63 ACAGCACGCAGGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTAAG
*
13321611 CGCCTGCACAC-C-CGTTTCATGGGTTGGCTTAG
128 CGCC--CACACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * ** ** *
13321643 GCATATAGAGTTCATTCCCTGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACAGAGTTCATTCCATGTCTAAGATCAAATCGAATCGAGGGTTGCGATAGCAAGATCGACA
* * * * * * * * * * *
13321708 GCATGTAGCGAGGGACTGGGTCGATCCCCGACTTGCGTATTATGCCTCTCTGGCCTGTTCAGCGC
66 GCACGCAGGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTAAGCGC
* * * *
13321773 CCGCACGCTTGTTTTGTGGGTTGACTTAG
131 CCACACGCTCGTTTCGTGGGTTGGCTTAG
* *
13321802 GCATACAGAGTCCGTTCC-TAGTCTAAGATCAAATCGAATCGAGGGTTGCGATAGCAAGATCGAC
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAAATCGAATCGAGGGTTGCGATAGCAAGATCGAC
* * * * * * * *
13321866 AGTACGCAGGGGGGGATTGGGTCGGT-TCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCA
65 AGCACGCAGGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTAAGCG
*
13321930 CCCATACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
13321960 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
13321987 CATACGGAGT
Statistics
Matches: 260, Mismatches: 76, Indels: 16
0.74 0.22 0.05
Matches are distributed among these distances:
157 8 0.03
158 124 0.48
159 128 0.49
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAAATCGAATCGAGGGTTGCGATAGCAAGATCGACA
GCACGCAGGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTAAGCGC
CCACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13322010 original size:26 final size:26
Alignment explanation
Indices: 13321960--13322012 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13321950 GTTGGCTTAG
*
13321960 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
13321986 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13322012 G
1 G
13322013 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13322316 original size:171 final size:168
Alignment explanation
Indices: 13322034--13322340 Score: 393
Period size: 171 Copynumber: 1.8 Consensus size: 168
13322024 TCGAGGGTTG
* * *
13322034 CGGCAGCAGGATCGACAGCACACAAGGGGGATCGAGCTGATCCCGACTTGCACATTCTGCCTCTC
1 CGGCAGCAGGATCGACAGCACACAAGGGGGACCGAGCTAATCCCGACTTGCACATTATGCCTCTC
* * * * ** *
13322099 AGTCGGTTGAGCGCCTGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATG
66 AGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATCCCCA-G
13322163 TCTAAGCCCCAGTTGGACCGAGGGTTGTGGTAGCAGGAC
130 TCTAAGCCCCAGTTGGACCGAGGGTTGTGGTAGCAGGAC
* * * ***
13322202 CGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTAATCCTC-AGCTTGTGTATTATGCCT
1 CGGCAGCAGGATCGACAGCACACA-AGGGGGACCGAGCTAATCC-CGA-CTTGCACATTATGCCT
* *
13322266 CTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATCCC
63 CTCAG-TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATCCC
13322331 CAGTCTAAGC
127 CAGTCTAAGC
13322341 ATACGGAGCT
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
168 22 0.19
169 17 0.15
170 17 0.15
171 57 0.49
172 3 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (168 bp):
CGGCAGCAGGATCGACAGCACACAAGGGGGACCGAGCTAATCCCGACTTGCACATTATGCCTCTC
AGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATCCCCAGT
CTAAGCCCCAGTTGGACCGAGGGTTGTGGTAGCAGGAC
Found at i:13322339 original size:353 final size:342
Alignment explanation
Indices: 13321896--13322682 Score: 900
Period size: 353 Copynumber: 2.3 Consensus size: 342
13321886 GTCGGTTCCG
* * * * * * *
13321896 GCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCC-ATACGCTCGTTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGA-ACGCTCGTTTCATGGGTTGACTTAG
* * * *
13321960 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGA-
65 GCATACGGAGTTCATCCCA-GTCTAAGCATACGGAGCTCATTCCCAACCTAAGATCAAACCGGAC
*
13322024 TCGAGGGTTGCGGCAGCAGGATCGACAGCACACAAGGGGGATCGAG-CTGAT-CCCGACTTGCAC
129 T-GAGGGTTGCGGCAGCAGGATCGACAGCACACAAGAGGGATCGAGTC-GATCCCCGACTTGCAC
* * ** *
13322087 ATTCTGCCTCT-CAGTCGGTTGAGCGCCTGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGA
192 ATTCTGCCTCTCCAGTCGGCTGAGAGCCTACACGCCTGTTTCATGGGTTGGCTTAGGCATACGGA
*** *
13322151 GTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCG
257 GTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGT-G--GC---A---GCA---GGACCG
*
13322216 ACAGCACGCAGAGGGGGACCGGGCTAATCCTCA
310 ACAGCACGCAGAGGGGGACCGGACTAATCCTCA
* * * * *
13322249 GCTTGTGTATTATGCCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGAATTAGG
1 GCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGG
* ***
13322314 CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGCTCATTCCCAGCCTAAGATTGGACCGGACT
66 CATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGCTCATTCCCAACCTAAGATCAAACCGGACT
* * * **
13322379 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGATCGTGTCGATCCCCGGCTTGCGTATT
130 GAGGGTTGCGGCAGCAGGATCGACAGCACACAAGAGGGATCGAGTCGATCCCCGACTTGCACATT
* * *
13322444 CTGCCTGTCCAGTCGGCTGAGAGCCTACATGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
195 CTGCCTCTCCAGTCGGCTGAGAGCCTACACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* * * *
13322509 CATTCCATGTGTAATCCCCAACCGGATCGAGGGTTGTGGCAGCAGGACCGACAGCACTCAGAGGG
260 CATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGG
* *
13322574 GGACCGGACTGATCCTCG
325 GGACCGGACTAATCCTCA
* * * * * * *
13322592 GCTTGCGCATTATGACTCTTCGACCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGG
1 GCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGG
*
13322657 CCTACGGAGTTCATTCCCAGTCTAAG
66 CATACGGAGTTCA-TCCCAGTCTAAG
13322683 ATCAGACCAG
Statistics
Matches: 369, Mismatches: 58, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
343 110 0.30
344 1 0.00
346 3 0.01
349 1 0.00
352 2 0.01
353 147 0.40
354 25 0.07
355 80 0.22
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (342 bp):
GCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATCCCAGTCTAAGCATACGGAGCTCATTCCCAACCTAAGATCAAACCGGACTG
AGGGTTGCGGCAGCAGGATCGACAGCACACAAGAGGGATCGAGTCGATCCCCGACTTGCACATTC
TGCCTCTCCAGTCGGCTGAGAGCCTACACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGG
GACCGGACTAATCCTCA
Found at i:13322343 original size:26 final size:26
Alignment explanation
Indices: 13322313--13322365 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13322303 GTTGAATTAG
* *
13322313 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGCCTAA
*
13322339 GCATACGGAGCTCATTCCCAGCCTAA
1 GCATACGGAGCTCATCCCCAGCCTAA
13322365 G
1 G
13322366 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGCCTAA
Found at i:13322700 original size:159 final size:159
Alignment explanation
Indices: 13322339--13323242 Score: 582
Period size: 159 Copynumber: 5.6 Consensus size: 159
13322329 CCCAGTCTAA
* * * ** * * *
13322339 GCATACGGAGCTCATTCCCAGCCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACA
* * * * * * * *
13322404 GCACGCA-AGAGGGATCGTG-TCGATCCCCGGCTTGCGTATTCTGCCTGTCC-AGTCGGCTGAGA
66 GCACGCAGAGGGGGACCG-GACCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-TCGGCTCAGC
* * * *
13322466 G-CCTACATGC-CTGTTTCGTGGGTTGGCTTAG
129 GCCCGA-ACGCTC-ATTTCGTGGGTTGACTTAG
* * *** * * *
13322497 GCATACGGAGTTCATT-CCATGTGTAATCCCCA-ACCGGATCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGAAGTTCATTCCCA-GTCTAA-GATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGA
* * * * * * * *
13322560 CAGCACTCAGAGGGGGACCGGACTGATCCTCGGCTTGCGCATTATGACTCTTCGACCAGCTCAGT
64 CAGCACGCAGAGGGGGACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGC
*
13322625 GCCCGAACGCTCATTTCATGGGTTGACTTAG
129 GCCCGAACGCTCATTTCGTGGGTTGACTTAG
* * * ** * * **
13322656 GCCTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGTTAGTAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACA
* * * * ** * * *
13322721 GCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTATGCATTTTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGAGGGGGACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
* *
13322786 CCGTACGTTCATTTCGTGGGTTGGCTTAGGCTTCCATG
131 CCGAACGCTCATTTCGTGGGTT-G---A--CTT--A-G
* * * * *
13322824 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGTAGGAT
1 -----GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAC
* * * * * *
13322889 CGATC-GCACGTA-AGGGGAATCAGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGT
61 CGA-CAGCACGCAGAGGGGGA-CCGGACCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGC
* * * * *
13322951 TGAGCACCCGCACGC-CGTTTCGTGGGTTGGCTTAG
124 TCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAG
* * ** * * ** *
13322986 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCCAGGGTTATGGCAGCGGGACCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGA
* * * * *
13323049 CAGCACGCAGAGTGGGATC-GAGTCGAT-CCCGGCTTGTGCATTATGCCTCTCCGATTGGCTCAG
64 CAGCACGCAGAGGGGGACCGGA-CCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAG
* *
13323112 CGCCCGAACGTTCATTTCGTCGGTTGACTTAG
128 CGCCCGAACGCTCATTTCGTGGGTTGACTTAG
* * * **
13323144 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACA
* * *
13323209 ACAGGCAG-GGGGGACC-GAGCCAATCCCCGGCTTG
66 GCACGCAGAGGGGGACCGGA-CCGATCCCCGGCTTG
13323243 TGTATTCTAC
Statistics
Matches: 570, Mismatches: 141, Indels: 70
0.73 0.18 0.09
Matches are distributed among these distances:
156 5 0.01
157 104 0.18
158 147 0.26
159 170 0.30
160 9 0.02
162 1 0.00
163 2 0.00
165 6 0.01
167 1 0.00
168 1 0.00
170 1 0.00
171 12 0.02
172 48 0.08
173 63 0.11
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACA
GCACGCAGAGGGGGACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
CCGAACGCTCATTTCGTGGGTTGACTTAG
Found at i:13323190 original size:488 final size:490
Alignment explanation
Indices: 13322333--13323221 Score: 1200
Period size: 488 Copynumber: 1.8 Consensus size: 490
13322323 TTCATCCCCA
* ** * * * *
13322333 GTCTAAGCATACGGAGCTCATTCCCAGCCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGA
1 GTCTAAGCATACGAAGCTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGA
* *
13322398 TCGACAGCACGCAAGAGGGATCGTGTCGATCCCCGGCTTGCGTATTCTGCCTGTCCAGTCGGCTG
66 TCGACAGCACGCAAGAGGGATCGTGCCGATCCCCGGCTTGCGCATTCTGCCTGTCCAGTCGGCTG
* * * *
13322463 AGAGCCTACATGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAATCCCC
131 AGAGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * *
13322528 AACCGGATCGAGGGTTGTGGCAGCAGGACCGACAGCACTCAGAGGGGGACCGGACTGATCCTCGG
196 AACCGGACCCAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGACTGATCCTCGG
* * *
13322593 CTTGCGCATTATGACTCTTCGACCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGC
261 CTTGCGCATTATGACTCTCCGACCAGCTCAGCGCCCGAACGCTCATTTCATCGGTTGACTTAGGC
* * * ** * *
13322658 CTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGTTAGTAGGATCGGTAGC
326 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAAC
13322723 ACGCAGGGGGGGATCGGGCCGATCCCCAGCTTATGCATTTTGCCTCTCCGGTCGGCTGAGCGCCC
391 ACGCAGGGGGGGATCGGGCCGATCCCCAGCTTATGCATTTTGCCTCTCCGGTCGGCTGAGCGCCC
13322788 GTACGTTCATTTCGTGGGTTGGCTTAGGCTTCCAT
456 GTACGTTCATTTCGTGGGTTGGCTTAGGCTTCCAT
* * * *
13322823 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGTAGGA
1 GTCTAAGCATACGAAGCTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGA
* * *
13322888 TCGATC-GCACGTAAG-GGGAATCAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GATCG
66 TCGA-CAGCACGCAAGAGGG-ATC-GTGCCGATCCCCGGCTTGCGCATTCTGCCTGTCCAG-TCG
* * *
13322949 GTTGAGCA-CCCGCACGCC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
127 GCTGAG-AGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
13323012 GCCCCAGCCGGACCCAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGTGGGATC-GAGTCGAT
191 GCCCCAACCGGACCCAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGACT-GAT
* * *** * *
13323076 CC-CGGCTTGTGCATTATGCCTCTCCGATTGGCTCAGCGCCCGAACGTTCATTTCGTCGGTTGAC
255 CCTCGGCTTGCGCATTATGACTCTCCGACCAGCTCAGCGCCCGAACGCTCATTTCATCGGTTGAC
* *
13323140 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC
320 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
*
13323205 GGTAACAGGCAGGGGGG
385 GGTAACACGCAGGGGGG
13323222 ACCGAGCCAA
Statistics
Matches: 341, Mismatches: 52, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
488 127 0.37
489 99 0.29
490 112 0.33
491 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (490 bp):
GTCTAAGCATACGAAGCTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGA
TCGACAGCACGCAAGAGGGATCGTGCCGATCCCCGGCTTGCGCATTCTGCCTGTCCAGTCGGCTG
AGAGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AACCGGACCCAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGACTGATCCTCGG
CTTGCGCATTATGACTCTCCGACCAGCTCAGCGCCCGAACGCTCATTTCATCGGTTGACTTAGGC
ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAAC
ACGCAGGGGGGGATCGGGCCGATCCCCAGCTTATGCATTTTGCCTCTCCGGTCGGCTGAGCGCCC
GTACGTTCATTTCGTGGGTTGGCTTAGGCTTCCAT
Found at i:13323238 original size:158 final size:157
Alignment explanation
Indices: 13322829--13323244 Score: 417
Period size: 157 Copynumber: 2.6 Consensus size: 157
13322819 CCATGTCTAA
* * * * *
13322829 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGTAGGATCGATC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
* * * * * * * *
13322894 GCACGTAAGGGGAATC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGTTGAGCAC
66 GCACGCAGGGGGGATCGA-GCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCAC
* * * *
13322958 CCGCACGCCGTTTCGTGGGTTGGCTTAG
130 CCGAACGCCATTTCGTCGGTTGACTTAG
* * ** * * * *
13322986 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCCAGGGTTATGGCAGCGGGACCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGA
* * * *
13323049 CAGCACGCAGAGTGGGATCGAGTCGAT-CCCGGCTTGTGCATTATGCCTCTCCGATTGGCTCAGC
64 TAGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGC
* *
13323113 GCCCGAACGTTCATTTCGTCGGTTGACTTAG
128 ACCCGAACG-CCATTTCGTCGGTTGACTTAG
* * *
13323144 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
* * * *
13323209 ACAGGCAGGGGGGACCGAGCCAATCCCCGGCTTGTG
66 GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTG
13323245 TATTCTACCT
Statistics
Matches: 202, Mismatches: 49, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 101 0.50
158 94 0.47
159 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCACC
CGAACGCCATTTCGTCGGTTGACTTAG
Found at i:13323607 original size:26 final size:26
Alignment explanation
Indices: 13323577--13323656 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
13323567 TGGGTTGACT
13323577 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
13323603 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
13323629 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
13323655 TA
1 TA
13323657 AGATCGGACT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:13323989 original size:157 final size:156
Alignment explanation
Indices: 13323629--13324131 Score: 366
Period size: 157 Copynumber: 3.2 Consensus size: 156
13323619 ATCCCCAGTC
* * * * * *
13323629 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGCAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGA-TAGACCGAGGGTTGCAGCAGTAGGACCG
* ** * * * *
13323694 ACAGCACGTAGGGGGATTGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG
65 ACAGCACGAAGGGGGACCGGGCCAATCCCCAGCTTGCCCATTATGCCTCTCCGACCGGCTCAGCG
* *
13323759 CCCGTACGCTCGTTTCATGGGTTGGCT
130 CCCGAACGCTCGTTTCATGGGTTGACT
* * * ** * ** *
13323786 TAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTGGCAG-CGGACC
1 TAGGCATACGGAGTTCATTCCCTGTCTAAG-ATCAGATAG-ACCGAGGGTTGCAGCAGTAGGACC
* * ** * * * *
13323849 GACGGCACGCAAGTGGGACCGGGCTGAT-CCCGGCTTGCCCATTATGCCTTTTCGACTGGCTCAG
64 GACAGCACG-AAGGGGGACCGGGCCAATCCCCAGCTTGCCCATTATGCCTCTCCGACCGGCTCAG
**
13323913 CGCCCGCAACGCTCGTTTTGTGGGTTGACT
128 CGCCCG-AACGCTCGTTTCATGGGTTGACT
* * * **
13323943 TAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGATTAGAGCGAGGGTTACGGCAGTAGGATTG
1 TAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGA-TAGACCGAGGGTTGCAGCAGTAGGACCG
* * * * * * * * * * * * *
13324008 ACAACAC-ACATGAGGGGATCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCTGGCTGGCTAA
65 ACAGCACGA-A-G-GGGGACCGGGCCAATCCCCAGCTTGCCCATTATGCCTCTCCGACCGGCTCA
* * * * *
13324072 GCACCCGTACACTCATTTCATGGGTTGGCT
127 GCGCCCGAACGCTCGTTTCATGGGTTGACT
* *
13324102 TAGGCATACAGAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCCTGTCTAAG
13324132 CATACGGAGT
Statistics
Matches: 266, Mismatches: 69, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
156 52 0.20
157 112 0.42
158 14 0.05
159 57 0.21
160 31 0.12
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
TAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGATAGACCGAGGGTTGCAGCAGTAGGACCGA
CAGCACGAAGGGGGACCGGGCCAATCCCCAGCTTGCCCATTATGCCTCTCCGACCGGCTCAGCGC
CCGAACGCTCGTTTCATGGGTTGACT
Found at i:13324135 original size:26 final size:26
Alignment explanation
Indices: 13324105--13324157 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13324095 GTTGGCTTAG
13324105 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13324131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13324157 G
1 G
13324158 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13324362 original size:26 final size:26
Alignment explanation
Indices: 13324311--13324363 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13324301 GTTGGCTTAG
*
13324311 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
13324337 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
13324363 G
1 G
13324364 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:13324716 original size:26 final size:26
Alignment explanation
Indices: 13324666--13324716 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13324656 TGACTTAGGT
* *
13324666 ATACAGAGTTCATCCCCAGTTTAAGC
1 ATACAGAGTTCATCCCCAATCTAAGC
*
13324692 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
13324717 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGC
Found at i:13325052 original size:26 final size:25
Alignment explanation
Indices: 13325016--13325067 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13325006 GTTGGCTTAG
13325016 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
* *
13325042 GCATACGGAGTTCATTGCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
13325067 G
1 G
13325068 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:13326254 original size:157 final size:157
Alignment explanation
Indices: 13325764--13326256 Score: 426
Period size: 159 Copynumber: 3.1 Consensus size: 157
13325754 AAGCATACAA
** * * * *
13325764 AGTTCATTCCCA-GTCTAAGATCGAACTGGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCGAACCAGATTGAGGGTTGTGATAGCAGGATCGATAGCACGTA
* * * * * * * *
13325828 TGGGGGACCGGGTCAATCCCTGACTTGCGCATTCTACCTCTCC-AGCCGGTTGAGCACCCACACG
65 -GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CTGGCTGAGCACCCGCACA
* *
13325892 CCCGTTTCGTGTGTTGGCTTAGGCATA-GAG
128 CTCGTTTCGTGGGTTGGCTTAGGCATACG-G
* ** * * * * *
13325922 AGTTTATTCCATGTCTAAGCCCCAACCAGACTGAGGG-T-TG-TCGCAGCGACACCAGTAGCACG
1 AGTTCATTCCATGTCTAAGATCGAACCAGATTGAGGGTTGTGATAGCAG-GA-TCGA-TAGCACG
* * * * * * * * * *
13325984 TAGAGGGGGACCGGGCCGATCCCCAGTTTGCGTATTATGCCTCTTCG-GTCGGCTCAGCGCCCGT
63 T--AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACT-GGCTGAGCACCCGC
* ** * *
13326048 ACACTCGTTTCATGGGTTCACTTATGCATACGA
125 ACACTCGTTTCGTGGGTTGGCTTAGGCATACGG
* *
13326081 AATTCATTCC-TAGTCTAAGATCGGACCAGATTGAGGGTTGTGATAGCAGGATCGATAGCACGTA
1 AGTTCATTCCAT-GTCTAAGATCGAACCAGATTGAGGGTTGTGATAGCAGGATCGATAGCACGTA
* * *
13326145 GGGGGACTGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACTAGCTGAGCACCCGCACACT
65 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACACT
13326210 CGTTTCGTGGGTTGGCTTAGGCATACGG
130 CGTTTCGTGGGTTGGCTTAGGCATACGG
*
13326238 AGTTCAATCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
13326257 CATATGGAGT
Statistics
Matches: 251, Mismatches: 69, Indels: 31
0.72 0.20 0.09
Matches are distributed among these distances:
155 5 0.02
156 3 0.01
157 95 0.38
158 34 0.14
159 100 0.40
160 5 0.02
161 4 0.02
162 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCATGTCTAAGATCGAACCAGATTGAGGGTTGTGATAGCAGGATCGATAGCACGTAG
GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACACTC
GTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:13326266 original size:26 final size:25
Alignment explanation
Indices: 13326230--13326281 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13326220 GTTGGCTTAG
13326230 GCATACGGAGTTCAATCCATGTCTAA
1 GCATACGGAGTTCAATCCA-GTCTAA
* *
13326256 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCAATCCAGTCTAA
13326281 G
1 G
13326282 TTTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCAATCCAGTCTAA
Found at i:13327272 original size:159 final size:159
Alignment explanation
Indices: 13327017--13327480 Score: 574
Period size: 159 Copynumber: 2.9 Consensus size: 159
13327007 GGATCAGACT
* * * * * * *
13327017 GAGGGTTGCGGCAACAGGATCGGCAGCACGCAG-GGGGGACCGGGTCGATCCTCGACTTGCGCAT
1 GAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCAT
* * *
13327081 TCTGCCCCTCCGGGCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAGGGAGT
66 TCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
*
13327146 TCATTCCATCTCTAAGCCCCAGCCGAACC
131 TCATTCCATGTCTAAGCCCCAGCCGAACC
13327175 GAGGGTTGTGGCAGCGGGATCGACAGCGA-GCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCA
1 GAGGGTTGTGGCAGCGGGATCGACAGC-ACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCA
* * * * *
13327239 TTATGCCTCTCCGGCCGACTGAGCGCCCCCACGCCCTTTTCATGGGTTGGTTTAGGCACAGGGAG
65 TTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
* * *
13327304 TTCATTCTATGTCTAAGCCCCAGCCGGACT
130 TTCATTCCATGTCTAAGCCCCAGCCGAACC
* * * * * *
13327334 GAGGGTTGTGGCAGCGGGACCAATAGCACACAGAGGGGGACC-AGGACGATCCCCGGCTTGCACA
1 GAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGA-GTCGATCCCCGGCTTGCGCA
** * * * * * * * *
13327398 TTCTGCCTCTCTAGTCGGCTAAGCGCCCGCACGCTCGTTTCATTGTTTGGCTTAGGCATACGAAG
65 TTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
13327463 TTCATTCCATGTCTAAGC
130 TTCATTCCATGTCTAAGC
13327481 ATACGGAGTT
Statistics
Matches: 261, Mismatches: 41, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
158 29 0.11
159 232 0.89
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (159 bp):
GAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCAT
TCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
TCATTCCATGTCTAAGCCCCAGCCGAACC
Found at i:13327484 original size:26 final size:26
Alignment explanation
Indices: 13327453--13327505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13327443 TTTGGCTTAG
13327453 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13327479 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13327505 G
1 G
13327506 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13327687 original size:26 final size:26
Alignment explanation
Indices: 13327657--13327709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13327647 GTTGACTTAG
13327657 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13327683 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13327709 G
1 G
13327710 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13328024 original size:26 final size:26
Alignment explanation
Indices: 13327995--13328047 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13327985 GTTGGCTTAG
13327995 GCATACGGAGCTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGTCTAA
*
13328021 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGTCTAA
13328047 G
1 G
13328048 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGTCTAA
Found at i:13328237 original size:26 final size:26
Alignment explanation
Indices: 13328208--13328257 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13328198 GACTTCGGCA
13328208 TACGGAGTTCA-TCCTCAGTCTAAGCG
1 TACGGAGTTCATTCC-CAGTCTAAGCG
13328234 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13328258 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:13329285 original size:26 final size:26
Alignment explanation
Indices: 13329254--13329304 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13329244 TGGGTTGACT
* *
13329254 TAAGCATACTGATTTCATCCCCAGTG
1 TAAGCATACAGAGTTCATCCCCAGTG
*
13329280 TAAGCATACAGAGTTCATTCCCAGT
1 TAAGCATACAGAGTTCATCCCCAGT
13329305 CTGAGATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTG
Found at i:13330769 original size:26 final size:26
Alignment explanation
Indices: 13330739--13330791 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13330729 GTTGACTTAG
* *
13330739 GCATACTGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13330765 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13330791 G
1 G
13330792 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13331288 original size:26 final size:26
Alignment explanation
Indices: 13331238--13331290 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13331228 GTTGGCTTAG
* *
13331238 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13331264 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13331290 G
1 G
13331291 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13331477 original size:26 final size:26
Alignment explanation
Indices: 13331447--13331499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13331437 GTTGACTTAG
13331447 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13331473 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13331499 G
1 G
13331500 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13332980 original size:882 final size:882
Alignment explanation
Indices: 13331316--13332984 Score: 1974
Period size: 882 Copynumber: 1.9 Consensus size: 882
13331306 TGGTTGCGGT
** * * * *
13331316 AGCAGGACTGGTAGTAGGATCGGTAGCACGTAAGGGGGTCCAGGCTGATCCTCGGCTTGTGCATT
1 AGCAGGACCAGTAGTAGGATCGGTAGCACGCAAGGGGGTCCAGGCAGATCCTCAGCTTGCGCATT
* * * * *
13331381 CTGCCTCTCTGACCGGCCTCTTCGGCCCGCTGATCACCCGCATGCTCATTTCATGGGTTGACTTA
66 ATGCCTCTCTGACCGGCCTCTCCGACCCGCTGATCACCCGCACGCTCATTTCATAGGTTGACTTA
* * *
13331446 GGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGA
131 GGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGA
* * * *
13331511 CCGAAGGTTGCGGCCACAGGATCGACAGCACGCAGGAGGGATCGGGCCAATCCCTGACTTGCGCA
196 CCGAAGGTTGCAGCAACAGGATCGACAGCACGCACGAGGGAACGGGCCAATCCCTGACTTGCGCA
* * *
13331576 TGCTGCCTCCCCGATCAGCTGAGCGCCCGCACGTCCCATTTTGTGGGTTGGCTCAGGCATAGCGA
261 TGCTGCCTCCCCGACCAGCTGAGCGCCCGCACGACCCATTTCGTGGGTTGGCTCAGGCATAGCGA
* * *
13331641 GTTCATTCCATGTCTAAACCCCAGCCACACCGAGAGTTATGGTAGCGGGTCCGACAGCACGCAGA
326 GTTCATTCCATGTCTAAACCCCAGCCACACCGAGAGTTATGGCAACGGGACCGACAGCACGCAGA
* * * * * **
13331706 GGGAGATCGAGCCGATCCTTGGATTTCACATTATGCCTCTCCGATCGGCTCAGCTTCCACACGCT
391 GGGAGACCGAGCCGATCCCTGGATTGCACATTATGCCTCTCCGACCGGCTCAACGCCCACACGCT
* * *
13331771 CGTTTCATGAGTTGACTTAGGCATACAGAGTTCAGTCCCAGTCTAAGATCAGATAAGACCGAGGG
456 CATTTCATGAGTTGACTTAGGCATACAGAGTTCAGTCCCAGTCTAAGATCAGACAAGACCAAGGG
* * ** ** *
13331836 TTGTGACAGTAGGATCGGTAGCACGAAGGGGGGATCGGGCCGGTCCCCCGCTTGTGCGTTCTGCC
521 TTGCGACAGGAGGATCGACAGCACGAAGGGGGGATCGGGCCGGTCCCCCGCTTGCACATTCTGCC
** ** * * * *
13331901 TCTCCGGTCGGTTGAGTGCCCGTACGTTCGTTTCATGGGTTGGCTTAGGCGTACCAAGTTCATTC
586 TCTCCGACCGACTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACCAAGTTCATTC
** *
13331966 CATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGTAGCA
651 CATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCA
* * * * *
13332031 GGACCAGTCGTAGGATCGGCAGTACGTAGGGGAAGATCGGGCTGATCCCCGACTTGCGCACTCTG
716 GGACCAGTAGTAGGATCGGCAGCACGTAGGGGAAGACCGGGCTAATCCCCGACTTACGCACTCTG
13332096 CCTCTCCTACCGGCTGAGCACCCGCACGCTTATTTCATGGGTTGACTTAGGGATACGAAGTTCAT
781 CCTCTCCTACCGGCTGAGCACCCGCACGCTTATTTCATGGGTTGACTTAGGGATACGAAGTTCAT
13332161 TCCATGTCTAAGCCCTAGTCGGACCGAGGGTTATGGC
846 TCCATGTCTAAGCCCTAGTCGGACCGAGGGTTATGGC
* *
13332198 AGCAGGACCAGTAGTGGGATCGGTAGCACGCAGAGGGGGAT-CGGGCAGATCC-CTAGCTTGCGC
1 AGCAGGACCAGTAGTAGGATCGGTAGCACGCA-AGGGGG-TCCAGGCAGATCCTC-AGCTTGCGC
* * * * *
13332261 ATTATGCCTCTCT-AGTCGGCCTCTCCGACCGGCTGAGT-GCCCGTACGCTCATTTCGTAGGTTG
63 ATTATGCCTCTCTGA-CCGGCCTCTCCGACCCGCTGA-TCACCCGCACGCTCATTTCATAGGTTG
* *
13332324 ACTTAGGCATGCGGAGTTCA-CCCCTAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGA
126 ACTTAGGCATACGGAGTTCATCCCC-AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGA
* *
13332388 ACCAGACC-AAGGGTTGCAGCAACAGGATCGACAGTACGCAACGA-GGAACGGGCCGATCCCT-A
190 ACCAGACCGAA-GGTTGCAGCAACAGGATCGACAGCACGC-ACGAGGGAACGGGCCAATCCCTGA
* * * * * * * *
13332450 GCTTGCGCATTCTGTCTCTCTGGCC-GACTGAGTGCCCGTAC-ACCCATTTCGTGGGTTGGCTTA
253 -CTTGCGCATGCTGCCTCCCCGACCAG-CTGAGCGCCCGCACGACCCATTTCGTGGGTTGGCTCA
* * * * ** * * * *
13332513 GGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACTGGGGGTTGTGGCAACGGGACCGAC
316 GGCATAGCGAGTTCATTCCATGTCTAAACCCCAGCCACACCGAGAGTTATGGCAACGGGACCGAC
* * * ** * *
13332578 AGCACGCAGAGGGGGACC-AGGCTGATCCCTGGCTTGCGTATTATGCCTCTCTGACCTGCTCAAC
381 AGCACGCAGAGGGAGACCGA-GCCGATCCCTGGATTGCACATTATGCCTCTCCGACCGGCTCAAC
* * * **
13332642 GCCCGA-ACGCTCATTTCATGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGATTGGA
445 GCCC-ACACGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCAGTCCCAGTCTAAGATCAGA
** ** * **
13332705 CCGGACCAAGGGTTGCGGTAGGAGGATCGACAGCAC-ACAGGGGGGGATCGGTCCGGT-CCTTGA
509 CAAGACCAAGGGTTGCGACAGGAGGATCGACAGCACGA-A-GGGGGGATCGGGCCGGTCCCCCG-
*
13332768 CTTGCACATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
571 CTTGCACATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* * *
13332833 ATA-TATAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-C
636 ATACCA-AGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATC
* * *
13332896 TGAGGGTTAG-GGCAGCAGGACTAGTAGTAGGATCGGCAGCACGTAAGGGG-GGACCAGG-TCAA
700 -GAGGGTT-GCGGCAGCAGGACCAGTAGTAGGATCGGCAGCACGT-AGGGGAAGACCGGGCT-AA
** * *
13332958 TCCTTGACTTATGCATTCTGCCTCTCC
761 TCCCCGACTTACGCACTCTGCCTCTCC
13332985 GATCGGCCTT
Statistics
Matches: 651, Mismatches: 116, Indels: 40
0.81 0.14 0.05
Matches are distributed among these distances:
880 1 0.00
881 63 0.10
882 372 0.57
883 210 0.32
884 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (882 bp):
AGCAGGACCAGTAGTAGGATCGGTAGCACGCAAGGGGGTCCAGGCAGATCCTCAGCTTGCGCATT
ATGCCTCTCTGACCGGCCTCTCCGACCCGCTGATCACCCGCACGCTCATTTCATAGGTTGACTTA
GGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGA
CCGAAGGTTGCAGCAACAGGATCGACAGCACGCACGAGGGAACGGGCCAATCCCTGACTTGCGCA
TGCTGCCTCCCCGACCAGCTGAGCGCCCGCACGACCCATTTCGTGGGTTGGCTCAGGCATAGCGA
GTTCATTCCATGTCTAAACCCCAGCCACACCGAGAGTTATGGCAACGGGACCGACAGCACGCAGA
GGGAGACCGAGCCGATCCCTGGATTGCACATTATGCCTCTCCGACCGGCTCAACGCCCACACGCT
CATTTCATGAGTTGACTTAGGCATACAGAGTTCAGTCCCAGTCTAAGATCAGACAAGACCAAGGG
TTGCGACAGGAGGATCGACAGCACGAAGGGGGGATCGGGCCGGTCCCCCGCTTGCACATTCTGCC
TCTCCGACCGACTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACCAAGTTCATTC
CATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCA
GGACCAGTAGTAGGATCGGCAGCACGTAGGGGAAGACCGGGCTAATCCCCGACTTACGCACTCTG
CCTCTCCTACCGGCTGAGCACCCGCACGCTTATTTCATGGGTTGACTTAGGGATACGAAGTTCAT
TCCATGTCTAAGCCCTAGTCGGACCGAGGGTTATGGC
Found at i:13333442 original size:159 final size:158
Alignment explanation
Indices: 13333116--13333594 Score: 406
Period size: 158 Copynumber: 3.1 Consensus size: 158
13333106 CAAGCGTTGC
* * * * * *
13333116 GGCAGCAGGATCGACAGCACGC-AGGGGGA-CTGGGCCGATCCCCGGCTTACGCATTCTGCCTCT
1 GGCAGCAGGACCGACAGCACGCGAGGGGGATC-GAGCTGATCCCCGACTTGCGCATTATGCCTCT
* ** * * *
13333179 CTGATTGGCTGAGCGCCCGCACGC-C----CGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCA
65 CCGACCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * *
13333238 TGTCTAAGCTCCAG-CCGGACCGAGGGTTAT
130 -GTCTAAGAT-CAGACCGAACCGAAGGTTAT
* * * * * *
13333268 GGCAGCGGGACCGACAGCACTCAGAGGGGGATCGGGCTGATCCTCGGCTTGTGCATTATGCCTCT
1 GGCAGCAGGACCGACAGCACGC-GAGGGGGATCGAGCTGATCCCCGACTTGCGCATTATGCCTCT
* * ** * *
13333333 CCGACCGGTTTAGCACTTGA-ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
65 CCGACCGGCTGAGCAC-CCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCC
13333397 AGTCTAAGATCAGACCGAACC-AAGGTT-T
129 AGTCTAAGATCAGACCGAACCGAAGGTTAT
* * * * * *
13333425 GCGACAGTAGGATCGACAGCACGCGTGGGGGATCGAGTTGGTCCCCGACTTGCGCATTCTGCCTC
1 G-G-CAGCAGGACCGACAGCACGCGAGGGGGATCGAGCTGATCCCCGACTTGCGCATTATGCCTC
* ** * * *
13333490 TTCGGTCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTGATTCCC
64 TCCGACCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * **
13333555 AATCTAAGATCAGACCGGACTGAGGGTTGC
129 AGTCTAAGATCAGACCGAACCGAAGGTTAT
13333585 GGCAGCAGGA
1 GGCAGCAGGA
13333595 GTAACAATAG
Statistics
Matches: 258, Mismatches: 53, Indels: 26
0.77 0.16 0.08
Matches are distributed among these distances:
152 19 0.07
154 48 0.19
155 2 0.01
157 3 0.01
158 118 0.46
159 64 0.25
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GGCAGCAGGACCGACAGCACGCGAGGGGGATCGAGCTGATCCCCGACTTGCGCATTATGCCTCTC
CGACCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGAACCGAAGGTTAT
Found at i:13333516 original size:705 final size:707
Alignment explanation
Indices: 13332148--13333540 Score: 1754
Period size: 705 Copynumber: 2.0 Consensus size: 707
13332138 TGACTTAGGG
* *
13332148 ATACGAAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTATGGCAGCAGGACCAGTAGT
1 ATACGAAGTTCATTCCATGTCTAAGACCTAGTCGGACCGAGGGTTAGGGCAGCAGGACCAGTAGT
* * * * * *
13332213 GGGATCGGTAGCACGCAGAGGGGGATCGGGCAGATCCCTAGCTTGCGCATTATGCCTCTCTAGTC
66 AGGATCGGCAGCACGAAGAGGGGGACCGGGCAGATCCCTAGCTTACGCATTATGCCTCTCGAGTC
** * *
13332278 GGCCTCTCCGACCGGCTGAGTGCCCGTACGCTCATTTCGTAGGTTGACTTAGGCATGCGGAGTTC
131 GGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTC
*
13332343 ACCCCTAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGACCAAGGGTTGCAGC
196 ACCCCTAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGACCAAGCGTTGCAGC
* * * * *
13332408 AACAGGATCGACAGTACGCAACGAGGAACGGGCCGATCCCTAGCTTGCGCATTCTGTCTCTCTGG
261 AACAGGATCGACAGCACGCAACGAGGAACGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCTGA
* *
13332473 CCGACTGAGTGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCT
326 CCGACTGAGCGCCCG-ACACCC---TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * *
13332538 AAGCCCCAGTCGGACTGGGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCAGGCTGA
387 AAGCCCCAGCCGGACCGAGGGTTATGGCAACGGGACCGACAGCACGCAGAGGGGGACCAGGCTGA
* * * *
13332603 TCCCTGGCTTGCGTATTATGCCTCTCTGACCTGCTCAACGCCCGAACGCTCATTTCATGGGTTGA
452 TCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGAACGCTCATTTCATGGGTTGA
* ** * **
13332668 CTTAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGTAGGAGGATC
517 CTTAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGACAGGAGGATC
**
13332733 GACAGCACACAGGGGGGGATCGGTCCGGTCCTTGACTTGCACATTCTGCCTCTCCGACCGACTGA
582 GACAGCACACAGGGGGGGATCGGTCCGGTCCCCGACTTGCACATTCTGCCTCTCCGACCGACTGA
** * *
13332798 GTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATATAGTTCATTCCATGTCTAAGC
647 GCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATATATAGTTCATTCCATGTCTAAGC
* * * *
13332859 ATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACTGAGGGTTAGGGCAGCAGGACTAGTA
1 ATACGAAGTTCATT-CCATGTCTAAGACCTAG-TCGGACCGAGGGTTAGGGCAGCAGGACCAGTA
* * * *
13332922 GTAGGATCGGCAGCACGTAAG-GGGGGACCAGGTCA-AT-CCTTGACTTATGCATTCTGCCTCTC
64 GTAGGATCGGCAGCACG-AAGAGGGGGACC-GGGCAGATCCCTAG-CTTACGCATTATGCCTCT-
* * * *
13332984 CGA-TCGGCCTTTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
125 CGAGTCGGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACG
* * *
13333048 GAGTTCATCCCTAGTCTAAGCATACGAAGTAT-ATT-CTCAGTCTAAGATCTAATCAGACCAAGC
190 GAGTTCACCCCTAGTCTAAGCATACGAAGT-TCATTCCT-AGTCTAAGATCGAACCAGACCAAGC
* * * * *
13333111 GTTGCGGCAGCAGGATCGACAGCACGC-A-GGGGGACTGGGCCGATCCCCGGCTTACGCATTCTG
253 GTTGCAGCAACAGGATCGACAGCACGCAACGAGGAAC-GGGCCGATCCCCAGCTTACGCATTCTG
** *
13333174 CCTCTCTGATTGGCTGAGCGCCCG-CACGCC-CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
317 CCTCTCTGACCGACTGAGCGCCCGACAC-CCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
* * * * *
13333237 ATGTCTAAGCTCCAGCCGGACCGAGGGTTATGGCAGCGGGACCGACAGCACTCAGAGGGGGATCG
381 ATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAACGGGACCGACAGCACGCAGAGGGGGACCA
* * * * ** *
13333302 GGCTGAT-CCTCGGCTTGTGCATTATGCCTCTCCGACCGGTTTAGCACTTGAACGCTCATTTCGT
446 GGCTGATCCCT-GGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGAACGCTCATTTCAT
*
13333366 GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGTTTGCGACA
510 GGGTTGACTTA-GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGACA
* * * * * *
13333431 GTAGGATCGACAGCACGC-GTGGGGGATCGAGT-TGGTCCCCGACTTGCGCATTCTGCCTCTTCG
574 GGAGGATCGACAGCACACAGGGGGGGATCG-GTCCGGTCCCCGACTTGCACATTCTGCCTCTCCG
** * *
13333494 GTCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATA
638 ACCGACTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATA
13333541 CGGAGTTGAT
Statistics
Matches: 583, Mismatches: 86, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
704 3 0.01
705 223 0.38
706 64 0.11
708 3 0.01
709 7 0.01
710 51 0.09
711 220 0.38
712 12 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (707 bp):
ATACGAAGTTCATTCCATGTCTAAGACCTAGTCGGACCGAGGGTTAGGGCAGCAGGACCAGTAGT
AGGATCGGCAGCACGAAGAGGGGGACCGGGCAGATCCCTAGCTTACGCATTATGCCTCTCGAGTC
GGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTC
ACCCCTAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGACCAAGCGTTGCAGC
AACAGGATCGACAGCACGCAACGAGGAACGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCTGA
CCGACTGAGCGCCCGACACCCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGCCGGACCGAGGGTTATGGCAACGGGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCC
TGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGAACGCTCATTTCATGGGTTGACTTA
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGACAGGAGGATCGACA
GCACACAGGGGGGGATCGGTCCGGTCCCCGACTTGCACATTCTGCCTCTCCGACCGACTGAGCAC
CCACACGCTCATTTCATGGGTTGGCTTAGGCATATATAGTTCATTCCATGTCTAAGC
Found at i:13333736 original size:25 final size:26
Alignment explanation
Indices: 13333707--13333758 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13333697 GTTGACTTAG
* *
13333707 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
13333732 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
13333758 G
1 G
13333759 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Done.