Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 70 of 138
Found at i:13334034 original size:26 final size:26
Alignment explanation
Indices: 13333998--13334048 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13333988 TTGGCTTAGG
13333998 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACGGAGTTCATTCCCA-GTCTAAT
*
13334024 CATACTGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
13334049 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:13334202 original size:26 final size:26
Alignment explanation
Indices: 13334172--13334223 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13334162 GTTGGCTTAG
*
13334172 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13334198 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13334224 AACCAAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13334337 original size:171 final size:175
Alignment explanation
Indices: 13333921--13334370 Score: 520
Period size: 171 Copynumber: 2.6 Consensus size: 175
13333911 AGGGGGATTG
* * * * * * * * * * *
13333921 GGCCAATCCCCGGCTTACGCATTCTACCTCTTCGATC-AGCTGAGTGCTCGGACGCTCGTTTCGT
1 GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGA-CTGAGCGCCCGCATGCTCGTTTCAT
* *
13333985 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATCATACTGAGTTCATTCCCAGTCTAAG
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
**** * *
13334050 AGTTTGAGCCACGACAGCAAGATCGATAGCACATAGGATGGGACCA
130 AGACCAAACCACGACAGCAAGATCGATAGCACATAGGAGGGGACCA
* ** *
13334096 GGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCATGCTAGTTTCATG
1 GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCATGCTCGTTTCATG
*
13334161 GGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA-A
66 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* *
13334225 -ACCAAACCA-GA-AGCAAGATCGGTAGCACGTGAGG-GGGGACC-
131 GACCAAACCACGACAGCAAGATCGATAGCACAT-AGGAGGGGACCA
* * * * * *
13334266 GAGCCGATCCCC-AGCTTGTGTATTCTGCCTTTTCGACCGGCTGAGCGCCTGCATGCTCGTTTCA
1 G-GCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCATGCTCGTTTCA
13334330 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13334371 CCCAGCTGGA
Statistics
Matches: 236, Mismatches: 35, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
170 2 0.01
171 113 0.48
172 5 0.02
173 4 0.02
174 1 0.00
175 110 0.47
176 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (175 bp):
GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCATGCTCGTTTCATG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
GACCAAACCACGACAGCAAGATCGATAGCACATAGGAGGGGACCA
Found at i:13334672 original size:158 final size:159
Alignment explanation
Indices: 13334260--13334688 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 159
13334250 CACGTGAGGG
* * * * * * * *
13334260 GGGACCGAGCCGATCCCCAGCTTGTGTATTCTGCCTTTTCGACCGGCTGAGCGCCTGCATGCTCG
1 GGGACCGGGCCGAGCCCCGGCTTGTGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCATGCTCA
* * * * *
13334325 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
66 TTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGATGGACCAAGGGTT
* * *
13334390 GTGGCAGTAGGACTGGCAACACGCAGAGA
131 GTAGCAGCAGGACTGACAACACGCAGAGA
* * * ** * * *
13334419 GGGATCGGGCCGATCCCCGACTTCCGCATTATGCCTC-TCTAGCTGGCTCAGCGCCCGCATGCTC
1 GGGACCGGGCCGAGCCCCGGCTTGTGCATTCTGCCTCTTCGA-CTGGCTGAGCGCCCGCATGCTC
* * * *
13334483 ATTTTA-TGGCCTGACTTAGGCATAC-AGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAA
65 ATTTCATTGG-TTGGCTTAGGCATACGA-AGTTCATT-CCATGTCTAAGCACCAGAT-GGACCAA
* * *
13334544 GGGTTGTAGTAGCAGGA-TCGACACCACGCAG-GG
126 GGGTTGTAGCAGCAGGACT-GACAACACGCAGAGA
* * *
13334577 GGGACCGGGCCG-GCCCTTGGCTTGTGCATTCTGCCTCTTCGACTAGCTGAGCGCCCGCACGCTC
1 GGGACCGGGCCGAGCCC-CGGCTTGTGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCATGCTC
*
13334641 ATTTCATTTGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
65 ATTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
13334689 TATGGAGTTC
Statistics
Matches: 214, Mismatches: 44, Indels: 24
0.76 0.16 0.09
Matches are distributed among these distances:
157 6 0.03
158 89 0.42
159 116 0.54
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (159 bp):
GGGACCGGGCCGAGCCCCGGCTTGTGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCATGCTCA
TTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGATGGACCAAGGGTT
GTAGCAGCAGGACTGACAACACGCAGAGA
Found at i:13335414 original size:26 final size:26
Alignment explanation
Indices: 13335371--13335423 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13335361 GTTGGTTTAG
13335371 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
* *
13335397 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
13335423 G
1 G
13335424 ATTAGAACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:13335863 original size:710 final size:709
Alignment explanation
Indices: 13334256--13335863 Score: 1946
Period size: 711 Copynumber: 2.3 Consensus size: 709
13334246 GTAGCACGTG
* * * * * * **
13334256 AGGGGGGACCGAGCCGATCCCCAGCTTGTGTATTCTGCCTTTTCGACCGGCTGAGCGCCTGCATG
1 AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACA
* *
13334321 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAG
66 C-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
* * * * * *
13334386 GGTTGTGGCAGTAGGACTGGCAACACGCAGAGAGGGATCGGGCCGATCCCCGACTTCCGCATTAT
130 GGTTGTGGCAGCAGGACCGGCAACACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTAT
* *
13334451 GCCTCTCTAGCTGGCTCAGCGCCCGCATGCTCATTTTATGGCCTGACTTAGGCATACAGAGTTCA
195 GCCTCTCGAGCTGGCTCAGCGCCCGCATGCTCATTTCATGGCCTGACTTAGGCATACAGAGTTCA
* * * * * *
13334516 TTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTAGTAGCAGGATCGACACCACGCAGGGGGGA
260 TTCCCAGTCTAAGATCAGATCAGACCAAGGGCTGCAGCAACAGGATCGACACCACACAGGGGGGA
* * * * * *
13334581 CCGGGCCGGCCCTTGGCTTGTGCATTCTGCCTCTTCGACTAGCTGAGCGCCCGCACGCTCATTTC
325 CCGAGCCGGCCCTCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCCGCACGCTCATTTC
** * *
13334646 ATTTGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTA
390 ATGGGTTGGCTTAGGCATACGAAGCTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
13334711 AGATCAGACCGAACTGAGGGTTGTGGCAGTAGGACCAGCAGCAGGATCGACAACACATAAGTGGG
455 AGATCAGAACGAACTGAGGGTTATGGCAGCAGGACCAGCAGCAAGATCGACAACACATAAGTGGG
** * * * * * *
13334776 GATCGGGCTGATCCTTGACTTATGCATTCTACCTCTTCGGTCGGCCTCTCCAGCCGGTTGAGTGC
520 GATCGGGCTGATCCCCGACTTACGCATTCTACCGCTCCGATCGGCCTCTCCAGCCGATTGAGCGC
* * *
13334841 CCACACGCTCTTTCCTTGGGTTGACTTAGGTAGACGGAGTTCATCCCCAGTCTAAGCATACGAAG
585 CCACACGCTCTTT-CTTGGGTTGACCTAGGCAGACGAAGTTCATCCCCAGTCTAAGCATACGAAG
* * *
13334906 TTCATTCCCAGTCTAAGATCTAACCTAATCGAAGGTTGCGGCAGCATGATCGACAGCACGC
649 TTCATTCCCAGTCTAAGATCTAAACTAACCGAAGGTTGCGGCAGCAGGATCGACAGCACGC
* ** * * * *** *
13334967 AGGGGGGACCTGGCCGATCCCTGGCTTACACATTTTGCCTCTCCGGTTGGCTGAGTGCCCGCACG
1 AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC-
* * *
13335032 TCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAG
65 ACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
* * * * * * * *
13335097 GGTTGTGGTAGCAAGATCGGCAACACGCAAAGGGGGACCGGGCAGATCCTCGGCTTGCGCATTAT
130 GGTTGTGGCAGCAGGACCGGCAACACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTAT
* * * * * *
13335162 GCCTCTCCGATC-GGGTCAGCTCCCG-ATCGCTCGTTTCATGG-GTGGACTTAGGCATATAGAGT
195 GCCTCT-CGAGCTGGCTCAGCGCCCGCAT-GCTCATTTCATGGCCT-GACTTAGGCATACAGAGT
* *
13335224 TCATTCCCAGTCTAAGAT-AGGA-CTAGACCAAGGGCTGCGGCAACAGGATCGACATCACACAGG
257 TCATTCCCAGTCTAAGATCA-GATC-AGACCAAGGGCTGCAGCAACAGGATCGACACCACACAGG
* *
13335287 GGGGACCGAGCTAC-TCCC-CGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGC
320 GGGGACCGAGC--CGGCCCTCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCCGCACGC
* * * * *
13335350 TCGTTTCGTGGGTTGGTTTAGGCATACGGAGCTCATTCCATGTCTAAGCATACGGAGTTCTTTCC
383 TCATTTCATGGGTTGGCTTAGGCATACGAAGCTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * * *
13335415 CAGTCTAAGATTAGAACGAA-TCGAGGGTTATGGCAGCAGGACCAGTAGCAAGATTGGCAGCACA
448 CAGTCTAAGATCAGAACGAACT-GAGGGTTATGGCAGCAGGACCAGCAGCAAGATCGACAACACA
* * * * *
13335479 TAAG-GGGGATCGGG-TCGGTCCCCGGCTTGCGCATTTTGCCGCTCCGATCGGCCTCTCC-GACC
512 TAAGTGGGGATCGGGCT-GATCCCCGACTTACGCATTCTACCGCTCCGATCGGCCTCTCCAG-CC
***
13335541 GATTGAGCGCCTGTACGCTCGTTT-TGTGGGTTGACCTAGGCAGACGAAGTTCATCCCCAGTCTA
575 GATTGAGCGCCCACACGCTC-TTTCT-TGGGTTGACCTAGGCAGACGAAGTTCATCCCCAGTCTA
* * *
13335605 AGCATACGAAGTTCATTCCCAGTCTAAGATC-AAACTAGACCGAGGGTTGCGGCAGTAGGCTCGA
638 AGCATACGAAGTTCATTCCCAGTCTAAGATCTAAACTA-ACCGAAGGTTGCGGCAGCAGGATCGA
13335669 CAGCACGC
702 CAGCACGC
* *
13335677 AGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACA
1 AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACA
* * *
13335742 CACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAA
66 C-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
* * * * *
13335807 GGCTGTGGCAGCAGGACCGGTAGCACGCAGTGGGGGATCAGGTCGATCCCCGGCTTG
130 GGTTGTGGCAGCAGGACCGGCAACACGCAGAGGGGGATCAGGCCGATCCCCGGCTTG
13335864 TACATTCTGC
Statistics
Matches: 750, Mismatches: 132, Indels: 31
0.82 0.14 0.03
Matches are distributed among these distances:
709 9 0.01
710 313 0.42
711 420 0.56
712 7 0.01
713 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (709 bp):
AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACA
CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
GTTGTGGCAGCAGGACCGGCAACACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATG
CCTCTCGAGCTGGCTCAGCGCCCGCATGCTCATTTCATGGCCTGACTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATCAGATCAGACCAAGGGCTGCAGCAACAGGATCGACACCACACAGGGGGGAC
CGAGCCGGCCCTCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCCGCACGCTCATTTCA
TGGGTTGGCTTAGGCATACGAAGCTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGAACGAACTGAGGGTTATGGCAGCAGGACCAGCAGCAAGATCGACAACACATAAGTGGGG
ATCGGGCTGATCCCCGACTTACGCATTCTACCGCTCCGATCGGCCTCTCCAGCCGATTGAGCGCC
CACACGCTCTTTCTTGGGTTGACCTAGGCAGACGAAGTTCATCCCCAGTCTAAGCATACGAAGTT
CATTCCCAGTCTAAGATCTAAACTAACCGAAGGTTGCGGCAGCAGGATCGACAGCACGC
Found at i:13336059 original size:11 final size:11
Alignment explanation
Indices: 13336045--13336070 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13336035 TACCATCGCA
13336045 GGAGCATCATC
1 GGAGCATCATC
13336056 GGAGCATCATC
1 GGAGCATCATC
13336067 GGAG
1 GGAG
13336071 AGCCTAACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.23, G:0.35, T:0.15
Consensus pattern (11 bp):
GGAGCATCATC
Found at i:13336687 original size:26 final size:26
Alignment explanation
Indices: 13336651--13336701 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13336641 TGACTTAGAC
*
13336651 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
*
13336677 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
13336702 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:13338615 original size:26 final size:26
Alignment explanation
Indices: 13338565--13338617 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13338555 GTTGGCTTAG
*
13338565 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATATCTAA
13338591 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATATGGAGTTCATT-CCATATCTAA
13338617 G
1 G
13338618 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATATCTAA
Found at i:13338790 original size:26 final size:26
Alignment explanation
Indices: 13338761--13338813 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13338751 GTTGACTTAG
*
13338761 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
13338787 GCATACAGAGTTCATTCGTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13338813 G
1 G
13338814 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13339302 original size:26 final size:26
Alignment explanation
Indices: 13339263--13339315 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13339253 GTTGGCTTAG
*
13339263 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAATTCATTCTCA-GTCTAA
13339289 GCATACGAAATTCATTCTCAGTCTAA
1 GCATACGAAATTCATTCTCAGTCTAA
13339315 G
1 G
13339316 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAATTCATTCTCAGTCTAA
Found at i:13339609 original size:26 final size:26
Alignment explanation
Indices: 13339580--13339631 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13339570 GTTGACTTAG
13339580 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13339606 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13339632 TATCGAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13339618 original size:502 final size:503
Alignment explanation
Indices: 13339104--13340019 Score: 1214
Period size: 502 Copynumber: 1.8 Consensus size: 503
13339094 GATGACTTAG
** *
13339104 GCATACGGAGTTCATTCCAAGTCTAATATCGAACCGCACCGAGGGTTGCGACAGTAGGATCAACA
1 GCATACGGAGTTCATTCCAAGTCTAATATCGAACCAAACCGAGGGTTGCGACAGCAGGATCAACA
* * * *
13339169 GCACGCA-AGAGAGGACCAGGCCAGT-CCTCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
66 GCACGCAGAGAG-GGACCAGGCCAGTCCCT-GGCTCGTGCATTCTACCTCTCCGGCCAGCTGAGC
* *
13339232 GCCCGAACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGA
129 GCCCGAACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGA
* * * * *
13339297 AATTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAGGACTAGCAATAGGATC
194 AATTCATTCCCAGTCTAAGATC-GACCGAACCGAGGGTTACGACAGCAGGACCAACAATAGGATC
* * *
13339362 GACAGCA-GT-AGGGGGGA-CTAGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGACCAGCTG
258 GACAGCACGTAAGGGGAGATC-AGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTG
* * *
13339424 AGCACCCGCACGCTCGCTTCATGGGTTGGCTTAGGCATGC-AGAGTTCATTCCATGTCTAAGCCC
322 AGCACCCGCACGCTCGCTTCATGGGTTAGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGACC
*
13339488 CAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAATGGGATCGACTCTTTTTGGCTGAGCGCCC
386 CAACCAGACCGAGGGTTGCGGCAGCAGGACCGACAATGGGATCGACTCTTTTTGGCTGAGCGCCC
13339553 GTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
451 GTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
13339606 GCATATGGAGTTCATTCCTAGTCTAATATCGAACCAAACCGAGGGTTGCGACTGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAATATCGAACCAAACCGAGGGTTGCGACAGCAGGATCAACA
* * * * *** *
13339671 GCATGCAGGGAGGGATCGGGTTGGTCCCTGGCTCGTGCATTCTACCTCTCCTGCCAGCTGAGCGC
66 GCACGCAGAGAGGGACCAGGCCAGTCCCTGGCTCGTGCATTCTACCTCTCCGGCCAGCTGAGCGC
* ** * *
13339736 CCGCAGGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAG
131 CCGAACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAA
** * * *
13339801 TTCATTCCCAGTCTAAGATCGACCGAACCGAGGGTTGTGGCAGTAGGACCAACAGTAGGATCGAC
196 TTCATTCCCAGTCTAAGATCGACCGAACCGAGGGTTACGACAGCAGGACCAACAATAGGATCGAC
* * * ** * * ** *
13339866 AGCACTTAAGGGTAGATCGGGCCGATCCTTGGCTTGCGCATTCTGGCTCTCCGACTGGCTGAGCG
261 AGCACGTAAGGGGAGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCA
* * * **
13339931 CCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGATCGGACC
326 CCCGCACGCTCGCTTCATGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGACCCAACC
*
13339996 AGACTGAGGGTTGCGGCAGCAGGA
391 AGACCGAGGGTTGCGGCAGCAGGA
13340020 TCGATAGCAC
Statistics
Matches: 349, Mismatches: 59, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
501 40 0.11
502 181 0.52
503 126 0.36
504 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (503 bp):
GCATACGGAGTTCATTCCAAGTCTAATATCGAACCAAACCGAGGGTTGCGACAGCAGGATCAACA
GCACGCAGAGAGGGACCAGGCCAGTCCCTGGCTCGTGCATTCTACCTCTCCGGCCAGCTGAGCGC
CCGAACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAA
TTCATTCCCAGTCTAAGATCGACCGAACCGAGGGTTACGACAGCAGGACCAACAATAGGATCGAC
AGCACGTAAGGGGAGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCA
CCCGCACGCTCGCTTCATGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGACCCAACC
AGACCGAGGGTTGCGGCAGCAGGACCGACAATGGGATCGACTCTTTTTGGCTGAGCGCCCGTACG
CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:13339795 original size:26 final size:26
Alignment explanation
Indices: 13339765--13339817 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13339755 GTTGGCTTAG
13339765 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13339791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13339817 G
1 G
13339818 ATCGACCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13340323 original size:159 final size:157
Alignment explanation
Indices: 13339897--13340463 Score: 460
Period size: 159 Copynumber: 3.6 Consensus size: 157
13339887 CCGATCCTTG
* *
13339897 GCTTGCGCATTCTGGCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT-AGCTTAG
1 GCTTGCGCATTATGGCTCTCCGAC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA-CTTAG
* * *
13339961 GCATACGAAGTTCATTCCATGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGATA
64 GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGACCGATA
* **
13340026 GCACGCAGGGGGGACGGGGCCAATCCCTG
129 GCACGCAGGGGGGACGGAGCCAATCCCCA
* * * * * * * * *
13340055 GCTTGCGCATTTTGGCTCTCCGGCCGGTTGAGTGGCTGCACGCCCATTTTGTGGGTTGGCTTAGG
1 GCTTGCGCATTATGGCTCTCC-GACGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * ** ** * * ** *
13340120 CATAGGGAGTTCATTCCATGTCTATGCCCTAG-CCGGACCAAGGGTTGTGGTAGTGGGACCGGTA
65 CATACGAAGTTCATTCCATGTCTAAGATC-AGACCGGACTGAGGGTTGCGGCAGCAGGACCGATA
* *
13340184 GCACGTAGAGGGGGATC-GAGCCTATCCCCA
129 GCACGCAG-GGGGGA-CGGAGCCAATCCCCA
* * * * *
13340214 GCTTGCGCATTATGCCTCCCCGATCGGCTCAGCGCCCGCCCGCTCATTTCATGGGTTGACTTAGG
1 GCTTGCGCATTATGGCTCTCCGA-CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * *
13340279 CATACGAAGTTCATTCCCA-GTCTAAGATCAGACGGGACTGAGGGTTGGGGCAGCAGGATCGACA
65 CATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGACCGATA
* * * *
13340343 GCATGCAGGGGGGGACTGG-GTCGATCCCCG
129 GCACGCA-GGGGGGAC-GGAGCCAATCCCCA
** * * * * * * * * ** * *
13340373 GCTTATGCATTCTGCCTCTCTGGCTGGCTAAGCACCCGTACGCTCGTTTTATGGGTTGGCTGAGG
1 GCTTGCGCATTATGGCTCTCCGAC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* *
13340438 AATACGGAGTTCATTCCATGTCTAAG
65 CATACGAAGTTCATTCCATGTCTAAG
13340464 CATATGGAGT
Statistics
Matches: 316, Mismatches: 80, Indels: 25
0.75 0.19 0.06
Matches are distributed among these distances:
158 113 0.36
159 197 0.62
160 6 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
GCTTGCGCATTATGGCTCTCCGACGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
ATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGACCGATAGC
ACGCAGGGGGGACGGAGCCAATCCCCA
Found at i:13340847 original size:26 final size:26
Alignment explanation
Indices: 13340817--13340869 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13340807 GTTCACTTAG
13340817 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13340843 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13340869 G
1 G
13340870 ATCGGAACGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13341198 original size:159 final size:158
Alignment explanation
Indices: 13340843--13341344 Score: 399
Period size: 158 Copynumber: 3.2 Consensus size: 158
13340833 CCCAGTCTAA
* * * *
13340843 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAACGAACCGAGCGTTGTGGCAGCAGCATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGTGGCAGCAGCACCGACA
* * * * * **
13340908 GCACGCAGGGGGGATCGGGTAGATCCTCGACTTTCGCATTCTACCTCTTCGACTGGCTGAGTGCC
66 GCACGCAGGGGGGATCGGGCAGATCCTCGACTTTCACATTATACCTCTCCGACTGGCTCAGCACC
* **
13340973 CGCACGCCCATTTCATGGGTTGGTTTAG
131 CGAACGCCCATTTCATGGGTTGACTTAG
* * ** *
13341001 GCATTCGAAGTTCATT-CCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAGCGAG-ACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGAACGGACCGAGGGTTGTGGCAGC-AGCACCG
** * * *
13341063 GTAGCACGCAGAGGGGGATCGGGCCGATCCTCGTCTTGT-ACATTATGCCTCTCCGA-TCGGCTC
63 ACAGCACGCAG-GGGGGATCGGGCAGATCCTCGACTT-TCACATTATACCTCTCCGACT-GGCTC
** *
13341126 AGCACCCGAACGGTCATTTCGTGGGTTGACTTAG
125 AGCACCCGAACGCCCATTTCATGGGTTGACTTAG
* ** * * * *
13341160 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGTGGCAGCAGCACCGACA
* * * * * * * * ** * *
13341225 ACACGTAGGGGGGA-CTAGGCCGATCCTCGACTTGCACATTCTACCTATCTGGTTGGCTGAGCGC
66 GCACGCAGGGGGGATC-GGGCAGATCCTCGACTTTCACATTATACCTCTCCGACTGGCTCAGCAC
* ** * *
13341289 CCGTAC-CCTTGTTTCATGGGTCGGCTTAG
130 CCGAACGCC-CATTTCATGGGTTGACTTAG
*
13341318 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13341345 CCCCAGCCGA
Statistics
Matches: 272, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 7 0.03
158 141 0.52
159 120 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGTGGCAGCAGCACCGACA
GCACGCAGGGGGGATCGGGCAGATCCTCGACTTTCACATTATACCTCTCCGACTGGCTCAGCACC
CGAACGCCCATTTCATGGGTTGACTTAG
Found at i:13341817 original size:352 final size:352
Alignment explanation
Indices: 13341160--13341980 Score: 1110
Period size: 352 Copynumber: 2.3 Consensus size: 352
13341150 GTTGACTTAG
* *
13341160 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGGCA
* * ** * * * *
13341225 ACACGTAGGGGGGACTAGGCCGATCCTC-GACTTGCACATTCTACCTATCTGGTTGGCTGAGCGC
66 GCACCTAGGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTACCTCTCTGGCTGGCTGAGCGC
*
13341289 CCGTACCCTTGTTTCATGGGTCGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCG
130 CCGTACCC-TGTTTCATGGGTCGGCTT--GCATACAGAGTTCATTCCATGTCTAAGCCCCAGCAG
* * * * *
13341354 AACCGAGGGTTATGGTAGTAGGATCGACAGCGGGATTGACAGCACGTAGAGGGGGACCAGGCTGA
192 AACCGAAGGTTATGGCAATAGGATCGACAGCGGGATCGACAGCACGTAGAGGGGAACCAGGCTGA
* * **
13341419 TCCTCGGCTTGCTCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGA
257 TCCTCGGCTTGCTCATTATGCCTCTCCAACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
*
13341484 ATTAGGCATACAGAGTTCATCCGCAGTCTAA
322 ATTAGGCATACAGAGTTCATCCCCAGTCTAA
* * ** * *
13341515 GCATACAGAGTTCATTCCCAGTTTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGGCA
* *
13341580 GCACCTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATGCTACCTCTTTGGCTGGCTGAGCGCC
66 GCACCTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGGCTGGCTGAGCGCC
* ** * ** *
13341645 CGCATGCCC-GTTTTGTGGGTTGGCTT-CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTAG-
131 CG--TACCCTGTTTCATGGGTCGGCTTGCATACAGAGTTCATTCCATGTCTAAGCCCCAGC-AGA
* * *
13341707 ACCGAAGGTTGTGGCAATAGGATTGACAGCGGGATCGACAGCACGTAGAGGGGAACCGGGCTGAT
193 ACCGAAGGTTATGGCAATAGGATCGACAGCGGGATCGACAGCACGTAGAGGGGAACCAGGCTGAT
* *
13341772 CCTTGGCTTGCTCATTATGCCTCTCCAACCAGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGAA
258 CCTCGGCTTGCTCATTATGCCTCTCCAACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAA
*
13341837 TTAGGCATACGGAGTTCATCCCCAGTCTAA
323 TTAGGCATACAGAGTTCATCCCCAGTCTAA
* * * *
13341867 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGGCA
* * *
13341932 GCACCCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTC
66 GCACCTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTC
13341981 CGATCGACTG
Statistics
Matches: 405, Mismatches: 57, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
352 273 0.67
353 1 0.00
355 126 0.31
356 1 0.00
357 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (352 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGGCA
GCACCTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGGCTGGCTGAGCGCC
CGTACCCTGTTTCATGGGTCGGCTTGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCAGAACC
GAAGGTTATGGCAATAGGATCGACAGCGGGATCGACAGCACGTAGAGGGGAACCAGGCTGATCCT
CGGCTTGCTCATTATGCCTCTCCAACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAATTA
GGCATACAGAGTTCATCCCCAGTCTAA
Found at i:13341877 original size:26 final size:26
Alignment explanation
Indices: 13341841--13341893 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13341831 GTTGAATTAG
13341841 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13341867 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13341893 G
1 G
13341894 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13342293 original size:26 final size:26
Alignment explanation
Indices: 13342257--13342307 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13342247 TGACTTAGGT
*
13342257 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
13342283 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
13342308 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:13342982 original size:26 final size:26
Alignment explanation
Indices: 13342952--13343004 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13342942 ATTGACTTAG
13342952 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
13342978 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
13343004 G
1 G
13343005 ATTGAATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:13343336 original size:26 final size:26
Alignment explanation
Indices: 13343306--13343358 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13343296 GTTGACTTAG
* *
13343306 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13343332 GCATACGGATTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13343358 G
1 G
13343359 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13345062 original size:26 final size:26
Alignment explanation
Indices: 13345033--13345085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13345023 GTTGACTTAG
13345033 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
* *
13345059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
13345085 G
1 G
13345086 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:13345733 original size:26 final size:26
Alignment explanation
Indices: 13345703--13345755 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13345693 GTTGACTTAG
13345703 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13345729 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13345755 G
1 G
13345756 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13346113 original size:158 final size:159
Alignment explanation
Indices: 13345729--13346117 Score: 382
Period size: 158 Copynumber: 2.5 Consensus size: 159
13345719 CCCAGTCTAA
* * ** *
13345729 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTCGCAGCAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTATCGGCAGCAGGATCGA-C
* ** * * * * *
13345793 AG-AGCGCA-AGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
65 AGCA-CGTAGAGAAGGAGCGGGCTAATCCCCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGC
* *
13345856 GCCCGCACGCCTATTTCGCGGGTTGGCTTAG
129 GCCCGCACGCCTATTTCGCAGGTTGACTTAG
* * ** * *
13345887 GCATAGGGAGTTGATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGCTAT-GGCAGC-GAGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGG-TATCGGCAGCAG-GATC
* * * *
13345948 GAGAGCACGTAGA-AAGGAGCGGGTTAATCCCCGACTTGCGCATTATGCCTCTTCGGTCAGCTCA
62 GACAGCACGTAGAGAAGGAGCGGGCTAATCCCCGACTTGCGCATTATGCCTCTCCGGCCAGCTCA
*
13346012 GCGCCCGCACG-CTAATTTCGTAGGTTGACTTAG
127 GCGCCCGCACGCCT-ATTTCGCAGGTTGACTTAG
* * * *
13346045 GCATACGAAGTTCATTCCCAGCCTAAGATCAGATCAGACCGAGGGTTTCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTATCGGCAGCAGGATCGACA
13346110 GCACGTAG
66 GCACGTAG
13346118 GGGGGACTAA
Statistics
Matches: 182, Mismatches: 37, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
157 11 0.06
158 160 0.88
159 11 0.06
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTATCGGCAGCAGGATCGACA
GCACGTAGAGAAGGAGCGGGCTAATCCCCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGC
CCGCACGCCTATTTCGCAGGTTGACTTAG
Found at i:13346908 original size:158 final size:159
Alignment explanation
Indices: 13346673--13347110 Score: 411
Period size: 158 Copynumber: 2.8 Consensus size: 159
13346663 AGGATCAGCG
* * * * * * * * * *
13346673 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTTC-AGCTGGCTGAGTGC
1 GCACACAGGGGGGACCAGGCCAATCCCCGACTTGCGCATTATGCCTTTCCGA-CCGACTGAGCGC
* * * *
13346737 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC
65 CCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
* * *** *
13346801 GGACCGAGGGTTGTGGTAGTGGGATCGACA
130 AGACCAAGGGTTGCAATAGTAGGATCGACA
* * * *
13346831 GCACGCAGAGGGGGACCAGGCCAATCCTCGGCTTGCGCA-TATGCCTCTT-CGATCGACTGAGCG
1 GCACACAG-GGGGGACCAGGCCAATCCCCGACTTGCGCATTATGCCT-TTCCGACCGACTGAGCG
* * * ** *
13346894 CTCACATGCTCATTTCGTGGGTTGACTTATCCATACGGAGTTCATTGCCA-GTCTAAG-ATCAGA
64 CCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
*
13346957 CCAGATCAAGGGTTGCAATAGTAGGATCGACA
128 CCAGACCAAGGGTTGCAATAGTAGGATCGACA
* ** * **
13346989 GCACACAGGGGGGATCAGGCTGATCCCCGACTTGCGCATTCTGCCTTTCCGACCGGTTGAGCGCC
1 GCACACAGGGGGGACCAGGCCAATCCCCGACTTGCGCATTATGCCTTTCCGACCGACTGAGCGCC
* * * * * *
13347054 CGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCGAAGCA
66 CACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13347111 TACGAAGTTC
Statistics
Matches: 224, Mismatches: 47, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 32 0.14
158 159 0.71
159 33 0.15
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCACACAGGGGGGACCAGGCCAATCCCCGACTTGCGCATTATGCCTTTCCGACCGACTGAGCGCC
CACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCA
GACCAAGGGTTGCAATAGTAGGATCGACA
Found at i:13347575 original size:27 final size:26
Alignment explanation
Indices: 13347545--13347605 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
13347535 AAACTCTTTC
**
13347545 TAAAAAATTTTAAAAAATCCTGAACCA
1 TAAAAAATTTT-AAAAATCCTGAAAAA
* * *
13347572 TAAAAAGTTTTGAAAATCGTGAAAAA
1 TAAAAAATTTTAAAAATCCTGAAAAA
13347598 TAAAAAAT
1 TAAAAAAT
13347606 GGGTCAACTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.26
Consensus pattern (26 bp):
TAAAAAATTTTAAAAATCCTGAAAAA
Found at i:13347840 original size:26 final size:26
Alignment explanation
Indices: 13347804--13347856 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13347794 GTTGACTTAG
* *
13347804 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
*
13347830 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
13347856 G
1 G
13347857 ATCTAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:13348139 original size:158 final size:157
Alignment explanation
Indices: 13347830--13348160 Score: 385
Period size: 158 Copynumber: 2.1 Consensus size: 157
13347820 CCCAGTCTAA
** * * *
13347830 GCATACGGAGTTCATTACCAGTCTAAGATCTAACTGGACCGAGGGTTGCAGTAGCAGGATCAGCA
1 GCATACGGAGTTCATTACCAGTCTAAGATCTAACCAGACCAAGGGTTGCAGTAGCAAGATCAACA
** * * * * **
13347895 ACACGCAGCGGGGACCAGCCGATCCCCTGCTTGCGCATTCTGCCTCTCTGGCTTGTTGAGCGCCC
66 ACACAAAGCGGGGACCAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGCCC
13347960 GCACGCCCATTTCGTGAGTTGGCTTAG
131 GCACGCCCATTTCGTGAGTTGGCTTAG
* * * * *
13347987 GCATAGGGAGTTCATTCCCAGTCTAAGAT-TGGACCAGACCAAGGGTTTCAGTAGCAAGATCAAT
1 GCATACGGAGTTCATTACCAGTCTAAGATCT-AACCAGACCAAGGGTTGCAGTAGCAAGATCAAC
* * * *
13348051 AGCACAAAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGC
65 AACACAAAGCGGGGACC-AGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGC
* * * *
13348116 TCGCACGCTCATTTTGTGGGTTGGCTTAG
129 CCGCACGCCCATTTCGTGAGTTGGCTTAG
**
13348145 GCATACATAGTTCATT
1 GCATACGGAGTTCATT
13348161 CCATGTTTAA
Statistics
Matches: 143, Mismatches: 29, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
156 1 0.01
157 65 0.45
158 77 0.54
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTACCAGTCTAAGATCTAACCAGACCAAGGGTTGCAGTAGCAAGATCAACA
ACACAAAGCGGGGACCAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGCCC
GCACGCCCATTTCGTGAGTTGGCTTAG
Found at i:13348386 original size:26 final size:26
Alignment explanation
Indices: 13348356--13348406 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13348346 TGACTTAGGC
13348356 ATACGAAATTCA-TCCCAAGTCTAAGT
1 ATACGAAATTCATTCCC-AGTCTAAGT
*
13348382 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAATTCATTCCCAGTCTAAG
13348407 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (26 bp):
ATACGAAATTCATTCCCAGTCTAAGT
Found at i:13348726 original size:26 final size:26
Alignment explanation
Indices: 13348696--13348748 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13348686 GTTGGCTTAG
13348696 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13348722 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13348748 G
1 G
13348749 AGTTTTAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13349026 original size:22 final size:22
Alignment explanation
Indices: 13348998--13349041 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
13348988 TAAAGAGCAT
13348998 TTGAGATTTTATAGGTTTGCTG
1 TTGAGATTTTATAGGTTTGCTG
13349020 TTGAGATTTTATAGGTTTGCTG
1 TTGAGATTTTATAGGTTTGCTG
13349042 CCAGTAGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.05, G:0.27, T:0.50
Consensus pattern (22 bp):
TTGAGATTTTATAGGTTTGCTG
Found at i:13349481 original size:26 final size:26
Alignment explanation
Indices: 13349445--13349497 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13349435 GTTGACTTAG
13349445 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
13349471 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13349497 G
1 G
13349498 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13349789 original size:159 final size:158
Alignment explanation
Indices: 13349504--13349970 Score: 451
Period size: 159 Copynumber: 3.0 Consensus size: 158
13349494 TAAGATCGAA
* * * * * * **
13349504 CCAGATCGAGGGTTGCGGCTGTAGGATCGACAGCATGCAGGG-GGGACCGGGCCGATCC-CAACT
1 CCAGACCGAGGGTTGCGGCAGCAGGAACGACAGCACGCAGGGTGGGACCGGGCCAATCCTCGGCT
* * * * * * * * *
13349567 TGCGCATTCTGCCTCTCC-AGCCGACTGAGCACCTACACACCCATTTCATGGGTTGGCTTAGGCA
66 TGTGCATTATGCCTCTCCGA-CCGACTCAACGCC-CCACGCTCGTTTCATGGGTTGGCTTAGGCA
* *
13349631 TAGGGAGTTCATTCCATGTCTAACCCCCAG
129 TACGGAGTTCATTCCATGTCTAACACCCAG
* * * *
13349661 CCAGACCGAGGGTTGTGGCAGC-GGAACTGATAGCACGCAGAGG-GGGACCGGGTCGATCCTCGG
1 CCAGACCGAGGGTTGCGGCAGCAGGAAC-GACAGCACGCAG-GGTGGGACCGGGCCAATCCTCGG
* * * * * * *
13349724 CTTGTGCATTATGCCTCTCTGGCTGGCTCAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGC
64 CTTGTGCATTATGCCTCTCCGACCGACTCAACGCCC-CACGCTCGTTTCATGGGTTGGCTTAGGC
* ***
13349789 ATACGGAGTTCATTCTCA-GTCTAAGATTGAG
128 ATACGGAGTTCATTC-CATGTCTAACACCCAG
* * * *
13349820 CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGTGGGATCGGGCCAATCCTCGGCT
1 CCAGACCGAGGGTTGCGGCAGCAGGAACGACAGCACGCAGGGTGGGACCGGGCCAATCCTCGGCT
* * * **
13349885 TGTGCATTCTGCTTCTCCGACCGACTGAGTGCCCCACGCTCGTTTCATGGGTTGGCTTAGGCATA
66 TGTGCATTATGCCTCTCCGACCGACTCAACGCCCCACGCTCGTTTCATGGGTTGGCTTAGGCATA
13349950 CGGAGTTCATTCCATGTCTAA
131 CGGAGTTCATTCCATGTCTAA
13349971 GCATACGGAG
Statistics
Matches: 249, Mismatches: 52, Indels: 17
0.78 0.16 0.05
Matches are distributed among these distances:
156 4 0.02
157 30 0.12
158 65 0.26
159 144 0.58
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CCAGACCGAGGGTTGCGGCAGCAGGAACGACAGCACGCAGGGTGGGACCGGGCCAATCCTCGGCT
TGTGCATTATGCCTCTCCGACCGACTCAACGCCCCACGCTCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAACACCCAG
Found at i:13349995 original size:26 final size:26
Alignment explanation
Indices: 13349945--13349997 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13349935 GTTGGCTTAG
*
13349945 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13349971 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13349997 G
1 G
13349998 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13350152 original size:26 final size:26
Alignment explanation
Indices: 13350116--13350168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13350106 GTTGACTTAG
*
13350116 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
13350142 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
13350168 G
1 G
13350169 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:13350639 original size:671 final size:671
Alignment explanation
Indices: 13349358--13350643 Score: 1694
Period size: 671 Copynumber: 1.9 Consensus size: 671
13349348 GCTTGAACCC
* *
13349358 ACCTACCACCCGTTCGATCCTCGGCTTACGCATCCTGCCTCTCTGGTCGACTGAACGCCCTCACG
1 ACCTACCACCCGTTCGATCCTCGACTTACGCATCCTGCCTCTCTGGTCGACTGAACGCCCGCACG
* * *
13349423 GTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACAGAGTTTATTC
66 CTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATTC
* *
13349488 CCAGTCTAAGATCGAACCAGATCGAGGGTTGCGGCTGTAGGATCGACAGCATGCAGGGGGGACCG
131 CCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCTGTAGGATCGACAGCACGCAGGGGGGACCG
* * * *
13349553 GGCCGATCCCAACTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCTACACACCCATTTCATGG
196 GGCCAATCCCAACTTGCGCATTCTGCCCCTCCAGCCGACTGAGCACCCACACACCCAGTTCATGG
* *
13349618 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGCCAGACCGAGGGTTGTGGCAGC
261 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAACCAGACCGAGGGTTATGGCAGC
* * * * * *
13349683 GGAACTGATAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGTGCATTATGCCTCTCTGGCT
326 GGAACCGACAGCACACAGAAGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCT
* * * ** *
13349748 GGCTCAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
391 GACTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTCAATCTAA
* * *
13349813 GATTGAGCCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGTGGGATCGGGCCAATC
456 GATAGAGCCGGACAGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGTGGGATCGGGCCAATC
* * * * *
13349878 CTCGGCTTGTGCATTCTGCTTCTCCGACCGACTGAGTGCCCCACGCTCGTTTCATGGGTTGGCTT
521 CCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAATGCCCCACGCTCGTTTCATGGGTTGGCTT
13349943 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAG
586 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAG
13350008 ACCGAGGGTTACGACAGCAGG
651 ACCGAGGGTTACGACAGCAGG
* *
13350029 ACCTACCACCCGTTCGATCCTCGACTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACG
1 ACCTACCACCCGTTCGATCCTCGACTTACGCATCCTGCCTCTCTGGTCGACTGAACGCCCGCACG
* * *
13350094 CTCGTTTCT-TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTAATT
66 CTCATTT-TGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATT
** ** * *
13350158 CCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGG-TAGTAGGATCGGTAGCACGTAGGGGGGAT
130 CCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCT-GTAGGATCGACAGCACGCAGGGGGGAC
* ** ** *
13350222 CGGGCCAATCCCCAACTTGCGCATTCTGCCCCTCC-GACCGGCTGAGTGCCCGTACGCCC-GTTC
194 CGGGCCAAT-CCCAACTTGCGCATTCTGCCCCTCCAG-CCGACTGAGCACCCACACACCCAGTTC
* ** * ** **
13350285 GTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGATTGAGGGTTATGG
257 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAACCAGACCGAGGGTTATGG
* * *
13350350 CAGTGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCTCGGCTTGCGTATTATG-CTCT-T
322 CAGCGGAACCGACAGCACACAGAAGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCT
* * **
13350413 CGGCCT-ATTCAACGCCCACATGCTCGTTTCGTGGGTTGACTTCTGCATACAAAGTTCATTCTCA
387 -GG-CTGACTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTCA
* * * * *
13350477 ATTTAGGATCAGA-TCGGACAGAGGGTTGCTGCAGTAGGATCGACAGCACGCAGGG-GGGA-CGG
450 ATCTAAGAT-AGAGCCGGACAGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGTGGGATC-G
* ** * **
13350539 GGCCAATCCCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAATGCCCGCACG-TCCGTTTTG
513 GGCCAAT-CCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAATGCCC-CACGCT-CGTTTCA
* *
13350603 TGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGC
575 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13350644 CCCAACCGGA
Statistics
Matches: 526, Mismatches: 78, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
668 1 0.00
669 13 0.02
670 133 0.25
671 339 0.64
672 40 0.08
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (671 bp):
ACCTACCACCCGTTCGATCCTCGACTTACGCATCCTGCCTCTCTGGTCGACTGAACGCCCGCACG
CTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATTC
CCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCTGTAGGATCGACAGCACGCAGGGGGGACCG
GGCCAATCCCAACTTGCGCATTCTGCCCCTCCAGCCGACTGAGCACCCACACACCCAGTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAACCAGACCGAGGGTTATGGCAGC
GGAACCGACAGCACACAGAAGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCT
GACTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTCAATCTAA
GATAGAGCCGGACAGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGTGGGATCGGGCCAATC
CCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAATGCCCCACGCTCGTTTCATGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAG
ACCGAGGGTTACGACAGCAGG
Found at i:13350654 original size:159 final size:158
Alignment explanation
Indices: 13350144--13351452 Score: 676
Period size: 159 Copynumber: 8.2 Consensus size: 158
13350134 CAGTCTAAGC
* * * * * **
13350144 ATACGGAGTTAATTCCCA-GTCTAAG-ATC-GAACTGGACCGAGGGTTGCGGTAGTAGGATCGGT
1 ATACGGAGTTCATT-CCATGTCTAAGCACCAG-ACCGGACCGAGGGTTGCTGCAGTAGGATCGAC
** * ** * * **
13350206 AGCACGTAGGGGGGATCGGGCCAATCCCCAACTTGCGCATTCTGCCCCTCCGACCGGCTGAGTGC
64 AGCACACAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGC
* *
13350271 CCGTACGCCCG-TTCGTGGGTTGGCTTAGGT
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGT
* * * * ** * * *
13350301 GTAGGGAGTTCATTCCATGTCTAAGCCCCA-ACTGGATTGAGGGTT-ATGGCAGTGGGACCGACA
1 ATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCT-GCAGTAGGATCGACA
* * * * * *** * **
13350364 GCACACAGAAGGGGACCGGGCCGATCCTCGGCTTGCGTATTATG-CTCTTCGGCCTATTCAACGC
65 GCACACAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGC
* * * ** *
13350428 CCACATGCTCGTTTCGTGGGTTGACTTCTGC
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGT
** * * * *
13350459 ATACAAAGTTCATTCTCAAT-T-T-AGGATCAGATCGGACAGAGGGTTGCTGCAGTAGGATCGAC
1 ATACGGAGTTCATTC-C-ATGTCTAAGCACCAGACCGGACCGAGGGTTGCTGCAGTAGGATCGAC
* * * *
13350521 AGCACGCAGGGGGGACGGGGCCAATCCCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAATG
64 AGCACACAGGGGGGAC-GGGCCGAT-CCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTG
*
13350586 CCCGCACG-TCCGTTTTGTGGGTTGGCTTAGGT
127 CCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGT
* * * * *
13350618 ATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAAGGTTG-TGGCAGTGGGACCGACA
1 ATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCT-GCAGTAGGATCGACA
* * * * * * * *
13350681 GCACTTAGAGGGGGGCCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGTGC
65 GCAC--ACAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGC
* * *
13350746 CCGCACACTCGTTTCATGGGTTGACTTA-GT
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGT
* * * * * * * * *
13350776 CATACAGAGTTCATTCCCA-GTCTAA-CATCAGACTGGATCGAGGGTTACGGTAGCAGGATTGAC
1 -ATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCTGCAGTAGGATCGAC
* * * * **
13350839 AGTACACAGGGAGGGATCGGGTCGGTCCTCAGG-TTATGCATTCTGCCTCTTCGGTCGGCTGAGT
64 AGCACACAGGG-GGGA-CGGGCCGATCC-CCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGT
* * *
13350903 GCCTGCACGCTCGTTTCATGGGTTGGCTTAGGC
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGT
** * * * * * * *
13350936 ATACGGAGTTCATTCCATGTCTAAGCATACGGTGTTCATTCC-CAGTCTAAGATTGGATCGGACC
1 ATACGGAGTTCATTCCATGTCTAAGC--AC------CAGACCGGA-CCGAGGGTT-G--CTG-CA
* ** ** * *
13351000 G-AGGGTTGCGGTAGCACGTAGGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTC-TC
53 GTA-GGAT-CGACAGCACACA-GGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC
* * * * *
13351063 TGGTCGGCTGAATGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
114 -GGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGT
* * * *
13351109 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTG-TCGCAGT-GGAACCGAC
1 ATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCT-GCAGTAGG-ATCGAC
* * * * * * * * * **
13351171 AGCACATAGAGGGTGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTCAACG
64 AGCACACAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTG
* *
13351236 CCCGCACGCTCGTTTCATGGGTTGACTTA-GT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGT
** * * *
13351267 CATACGGAGTTCATTCCA-GTCTAAG-ATTAGACTGGATCGAGGGTTG-TGGCAGCAGGATCGAC
1 -ATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCT-GCAGTAGGATCGAC
* * * * * * * * *
13351329 AGCACGTA-AGGGGGGACCAGGTCGGTCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGC
64 AGCAC--ACAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGT
* * * * *
13351393 GCCTGTACGCTCATTTTGTGGGTTGGCTTAGGC
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGT
* *
13351426 ATACAGAGTTCATTCCTTGTCTAAGCA
1 ATACGGAGTTCATTCCATGTCTAAGCA
13351453 TTTAGAGTTC
Statistics
Matches: 869, Mismatches: 220, Indels: 123
0.72 0.18 0.10
Matches are distributed among these distances:
156 4 0.00
157 90 0.10
158 234 0.27
159 366 0.42
160 26 0.03
161 9 0.01
162 1 0.00
163 1 0.00
164 6 0.01
165 3 0.00
167 1 0.00
168 9 0.01
171 5 0.01
172 9 0.01
173 102 0.12
174 3 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
ATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCTGCAGTAGGATCGACAG
CACACAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGT
Found at i:13350934 original size:318 final size:317
Alignment explanation
Indices: 13350150--13350961 Score: 807
Period size: 318 Copynumber: 2.6 Consensus size: 317
13350140 AAGCATACGG
* * * * * * * * ** **
13350150 AGTTAATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGCGGTAGTAGGATCGGTAGCACGTA
1 AGTTCATTCCCAATCTAACATCAGATC-GGACAGAGGGTTACGGCAGCAGGATCGACAGCACACA
* * * * ** *
13350214 GGGGGGATC-GGGCCAATCCCCA-ACTTGCGCATTCTGCCCCTCCGACCGGCTGAGTGCCCGTAC
65 GGGGGGA-CGGGGCCAATCCCCAGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCAC
* * * **
13350277 GCCCG-TTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGATTGA
129 GCTCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGA
* * * *
13350341 GGGTTATGGCAGTGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCTCGGCTTGCGTATTA
194 AGGTTATGGCAGTGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGACTTGCGCATTA
* * * * ** *
13350406 TGCTCTTCGGCCTATTCAACGCCCACATGCTCGTTTCGTGGGTTGACTTCTGCATACAA
259 TGCTCTCCGACCGACTCAACGCCCACACACTCGTTTCATGGGTTGACTTCTGCATACAA
* * ** * * * *
13350465 AGTTCATTCTCAATTTAGGATCAGATCGGACAGAGGGTTGCTGCAGTAGGATCGACAGCACGCAG
1 AGTTCATTCCCAATCTAACATCAGATCGGACAGAGGGTTACGGCAGCAGGATCGACAGCACACAG
* * * *
13350530 GGGGGACGGGGCCAATCCCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAATGCCCGCACG-
66 GGGGGACGGGGCCAATCCCCAGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGC
*
13350594 TCCGTTTTGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAA
131 T-CGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAA
* ** * * *
13350659 GGTTGTGGCAGTGGGACCGACAGCACTTAGAGGGGGGCCGGGCCGATCCCCGACTTGTGCATTAT
195 GGTTATGGCAGTGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGACTTGCGCATTAT
* * ** * * *
13350724 GCCTCTCCGATCGGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTT-AGTCATACAG
260 G-CTCTCCGACCGACTCAACGCCCACACACTCGTTTCATGGGTTGACTTCTG-CATACAA
* * * *
13350783 AGTTCATTCCCAGTCTAACATCAGA-CTGGATC-GAGGGTTACGGTAGCAGGATTGACAGTACAC
1 AGTTCATTCCCAATCTAACATCAGATC-GGA-CAGAGGGTTACGGCAGCAGGATCGACAGCACAC
* ** * * *
13350846 AGGGAGGGATC-GGGTCGGTCCTCAGG-TTATGCATTCTGCCTCTTCGGTCGGCTGAGTGCCTGC
64 AGGG-GGGA-CGGGGCCAATCCCCAGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGC
* * *
13350909 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 ACGCTCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGC
13350962 ATACGGTGTT
Statistics
Matches: 408, Mismatches: 77, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
314 1 0.00
315 67 0.16
316 39 0.10
317 113 0.28
318 171 0.42
319 16 0.04
320 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (317 bp):
AGTTCATTCCCAATCTAACATCAGATCGGACAGAGGGTTACGGCAGCAGGATCGACAGCACACAG
GGGGGACGGGGCCAATCCCCAGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAG
GTTATGGCAGTGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGACTTGCGCATTATG
CTCTCCGACCGACTCAACGCCCACACACTCGTTTCATGGGTTGACTTCTGCATACAA
Found at i:13350964 original size:26 final size:26
Alignment explanation
Indices: 13350934--13350986 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13350924 GTTGGCTTAG
13350934 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13350960 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13350986 G
1 G
13350987 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13351148 original size:491 final size:488
Alignment explanation
Indices: 13350547--13351477 Score: 1346
Period size: 491 Copynumber: 1.9 Consensus size: 488
13350537 GGGGCCAATC
* * * **
13350547 CCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAATGCCCGCACGTCCGTTTTGTGGGTTGGC
1 CCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAATGCCCGCACGCCCATTTCATGGGTTGGC
* * *
13350612 TTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTTGTGGCAGTGGGACC
66 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTTGTCGCAGTGGAACC
* * *
13350677 GACAGCACTTAGAGGGGGGCCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCA
131 GACAGCACATAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCA
**
13350742 GTGCCCGCACACTCGTTTCATGGGTTGACTTAGTCATACAGAGTTCATTCCCAGTCTAACATCAG
196 ACGCCCGCACACTCGTTTCATGGGTTGACTTAGTCATACAGAGTTCATT-CCAGTCTAACATCAG
* * * * *
13350807 ACTGGATCGAGGGTTACGGTAGCAGGATTGACAGTAC-ACAGGGAGGGATCGGGTCGGTCCTC-A
260 ACTGGATCGAGGGTTACGGCAGCAGGATCGACAGCACGA-AGGG-GGGACCAGGTCGGTCCTCGA
* * * * * *
13350870 GGTTATGCATTCTGCCTCTTCGGTCGGCTGAGTGCCTGCACGCTCGTTTCATGGGTTGGCTTAGG
323 -CTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGG
* * *
13350935 CATACGGAGTTCATTCCATGTCTAAGCATACGGTGTTCATTCCCAGTCTAAGATTGGATCGGACC
387 CATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CCAGTCTAAGATTGGATCGGACC
13351000 GAGGGTTGCGGTAGCACGTAGGGGGGGATCGGGTCGAT
451 GAGGGTTGCGGTAGCACGTAGGGGGGGATCGGGTCGAT
*
13351038 CCCCGGCTTACGCATTCTGCCTC-TCTGGTCGGCTGAATGCCCGCACGCCCATTTCATGGGTTGG
1 CCCCGGCTTACGCATTCTACCTCTTC-GGTCGGCTGAATGCCCGCACGCCCATTTCATGGGTTGG
* * *
13351102 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTCGCAGTGGAAC
65 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTTGTCGCAGTGGAAC
* * *
13351167 CGACAGCACATAGAGGGTGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTC
130 CGACAGCACATAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTC
* * * *
13351232 AACGCCCGCACGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCAGTCTAAGATTAG
195 AACGCCCGCACACTCGTTTCATGGGTTGACTTAGTCATACAGAGTTCATTCCAGTCTAACATCAG
**
13351297 ACTGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAAGGGGGGACCAGGTCGGTCCTCGAC
260 ACTGGATCGAGGGTTACGGCAGCAGGATCGACAGCACG-AAGGGGGGACCAGGTCGGTCCTCGAC
* * * **
13351362 TTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCTGTACGCTCATTTTGTGGGTTGGCTTAGGCA
324 TTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCA
* **
13351427 TACAGAGTTCATTCCTTGTCTAAGCATTTAGAGTTCATTCCAGTCTAAGAT
389 TACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAGTCTAAGAT
13351478 AGAGGGATCG
Statistics
Matches: 388, Mismatches: 48, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
489 12 0.03
490 151 0.39
491 224 0.58
492 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (488 bp):
CCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAATGCCCGCACGCCCATTTCATGGGTTGGC
TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTTGTCGCAGTGGAACC
GACAGCACATAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCA
ACGCCCGCACACTCGTTTCATGGGTTGACTTAGTCATACAGAGTTCATTCCAGTCTAACATCAGA
CTGGATCGAGGGTTACGGCAGCAGGATCGACAGCACGAAGGGGGGACCAGGTCGGTCCTCGACTT
ACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATA
CAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATTGGATCGGACCGAGGG
TTGCGGTAGCACGTAGGGGGGGATCGGGTCGAT
Found at i:13351380 original size:158 final size:156
Alignment explanation
Indices: 13351012--13351452 Score: 456
Period size: 158 Copynumber: 2.8 Consensus size: 156
13351002 GGGTTGCGGT
* * * * * *
13351012 AGCACGTAGGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAATG
1 AGCACGTAAGGGGGGA-CCGGTCGAT-CCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACG
* * *
13351077 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
64 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGCT
*
13351142 GGACCGAGGGTTGTCGCAGTGGAACCGAC
128 GGACCGAGGGTTGTCGCAGAGGAACCGAC
* * * * * *
13351171 AGCACAT-AGAGGGTGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTCAAC
1 AGCACGTAAG-GGGGGACCGGTC-GATCCC-GACTTGCGCATTCTGCCTCTCCGGTCGGCTGAAC
* * * **
13351235 GCCCGCACGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCAGTCTAAG-ATTAGAC
63 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAG-C
* * *
13351299 TGGATCGAGGGTTGTGGCAGCAGG-ATCGAC
127 TGGACCGAGGGTTGTCGCAG-AGGAACCGAC
* * * *
13351329 AGCACGTAAGGGGGGACCAGGTCGGTCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCG
1 AGCACGTAAGGGGGGACC-GGTCGATCC-CGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACG
* * ** * *
13351394 CCTGTACGCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGCA
64 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGCA
13351453 TTTAGAGTTC
Statistics
Matches: 229, Mismatches: 43, Indels: 19
0.79 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 125 0.55
159 101 0.44
160 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (156 bp):
AGCACGTAAGGGGGGACCGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGCC
CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGCTGGA
CCGAGGGTTGTCGCAGAGGAACCGAC
Found at i:13352648 original size:26 final size:26
Alignment explanation
Indices: 13352611--13352660 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13352601 GTTGACTTAG
*
13352611 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13352637 GCATACGAAGTTCATTCCTAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
13352661 TAGATCAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13358668 original size:26 final size:26
Alignment explanation
Indices: 13358639--13358691 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13358629 GTTGACTTAG
13358639 GCATACGAAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
* * *
13358665 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
13358691 G
1 G
13358692 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:13359058 original size:26 final size:26
Alignment explanation
Indices: 13359022--13359074 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13359012 GTTGACTTAG
13359022 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13359048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13359074 G
1 G
13359075 ATCGAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13359415 original size:26 final size:26
Alignment explanation
Indices: 13359365--13359417 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13359355 GTTGGCTTAG
*
13359365 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13359391 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13359417 G
1 G
13359418 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13360100 original size:26 final size:26
Alignment explanation
Indices: 13360071--13360123 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13360061 GTTGACTTAG
*
13360071 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
13360097 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13360123 G
1 G
13360124 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13361093 original size:159 final size:157
Alignment explanation
Indices: 13360805--13361305 Score: 408
Period size: 159 Copynumber: 3.2 Consensus size: 157
13360795 CCCAGTCTAA
* * * * * * * * *
13360805 GCATACAGAGTTCATTCC-TATCTAAG-ATC-GAACCAGATCGAGGGGTGCGGCAGTAGGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAG-ACCGGACCGAGGGTTGCGGCAGGAGGACCGA
* * * * * * * *
13360867 TAACACGCAGGGGGATCGGGCCGATCCCCATCTTGCGCATTTTGCCTTTTCGACCGACTGAGTGC
65 TAGCACGTAAGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCG-CTGAGTGC
*
13360932 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
13360961 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGATGGTTGTGGCAGCGA-GACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAG-GAGGACCGA
* * * *
13361024 TAGCACGTAGATGGGGATCGAGCCGATCCCCAGCTTGCGCATTGTGCCTCTCCGGCCAGTTCAGT
65 TAGCACGTA-A-GGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACC-GCTGAGT
* * * *
13361089 GCCCGTACACTTGTTTCGTGGATTGAGC-TAG
127 GCCCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* * * * *
13361120 GCATACGGAGTTCATTCCCA-GTCT-AGGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGGAGGACCGA
* * * * * * * **
13361183 TAGTACGTAAGGTGGACCGA-TCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCA
65 TAGCACGTAAGG-GGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGA-CCGCTGAGTG
* * *
13361247 CCCGCACGCTCATTTCATGGGTTGGCTCAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13361277 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13361306 TACGGAGTTC
Statistics
Matches: 267, Mismatches: 62, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
156 21 0.08
157 105 0.39
158 19 0.07
159 116 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGGAGGACCGAT
AGCACGTAAGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGCTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13361307 original size:26 final size:26
Alignment explanation
Indices: 13361277--13361329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13361267 GTTGGCTCAG
*
13361277 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13361303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13361329 G
1 G
13361330 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13361483 original size:707 final size:706
Alignment explanation
Indices: 13360048--13361697 Score: 2257
Period size: 706 Copynumber: 2.3 Consensus size: 706
13360038 GCGTCTGCAT
* * *
13360048 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
* * * *
13360113 CCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCAGTAGCACGCAGGGGGGACC
66 CCCAGTCTAAGATCA-ACCAGATCGAGGGTTGCGGCAGTAGGATCGGTAGCACGCA-GGGGGACC
* * * *
13360178 GGGCCGATCCACGTCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGTACGCCCGTTTTGT
129 GGGCCGATCCCCGTCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCGT
*
13360243 GAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCAAGGGTTGTGGCA
194 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCAAGGGTTGTGGCA
* * * *** *
13360308 GCGGGACCGACAGCACGTAGAGGGGGATCGGGCTGATCCTTGGCTTGTGCATTATGCCTCTCCGG
259 GCGAGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGG
* * * * *
13360373 TCGGCTCAACGCCCATACGCTCGTTTCATGGGTTGAATTAGGCATACGAAGTTCATTCCCAATCT
324 CCAGCTCAACGCCCATACACTCGTTTCATGGATTGAACTAGGCATACGAAGTTCATTCCCAATCT
* * * *
13360438 AGGATCAGATCAAACTGAGGGTTACGGTAGTAGGATCGATAGCACGTAGGGTGGACCGACCGATC
389 AGGATCAGACCAAACCGAGGGTTACGGTAGTAGGATCGATAGCACGTAAGGTGGACCGACCAATC
* ** * * * *
13360503 CTCGGCTTACGTATTCTGCCTCTCTGATCGGCTGAGCACTGCACACTCATTTTATGGGTTGGCTT
454 CCCGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCACCGCACACTCATTTCATGGGTTGGCTC
* * * * *
13360568 AGGCATACGGGGTTGATTGCATGTCTAAGCATACAGAGTTCATTCCCTATCTAAGATCAGATCGG
519 AGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCTATCTAAGATCAGACCAG
* *
13360633 ACCGAGGGTTACGATAGTAGGACCAGCAGCAGGATTGACAGCACGTAGGGGGGACCGAGCCGATC
584 ACCGAGGGTTACGATAGTAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGAACCGAGCCGATC
* * * *
13360698 CCTAGCTTGCATATTCTGCCTCTTCGGCCAACCTCTCCGATCGGTTGAGCGCCCGTAC
649 CCTAGCTTGCACATTCTACCTCTTCGGCCAACCTCTCCGACCGATTGAGCGCCCGTAC
* * *
13360756 CCTCGTTTCATGGGTTGACTTAGTCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
* * * *
13360821 CCTA-TCTAAGATCGAACCAGATCGAGGGGTGCGGCAGTAGGATCGGTAACACGCAGGGGGATCG
66 CCCAGTCTAAGATC-AACCAGATCGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGGGGGACCG
* * * * * *
13360885 GGCCGATCCCCATCTTGCGCATTTTGCCTTTTCGACCGACTGAGTGCCCGCACGCCCGTTTCGTG
130 GGCCGATCCCCGTCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCGTG
* *
13360950 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CTGATGGTTGTGGCA
195 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC-AAGGGTTGTGGCA
* * *
13361014 GCGAGACCGATAGCACGTAGATGGGGATCGAGCCGATCCCCAGCTTGCGCATTGTGCCTCTCCGG
259 GCGAGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGG
* ** * * * * * *
13361079 CCAGTTCAGTGCCCGTACACTTGTTTCGTGGATTGAGCTAGGCATACGGAGTTCATTCCCAGTCT
324 CCAGCTCAACGCCCATACACTCGTTTCATGGATTGAACTAGGCATACGAAGTTCATTCCCAATCT
** * * *
13361144 AGGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGATAGTACGTAAGGTGGACCGATCAATC
389 AGGATCAGACCAAACCGAGGGTTACGGTAGTAGGATCGATAGCACGTAAGGTGGACCGACCAATC
* *
13361209 CCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCT
454 CCCGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCA-CCGCACACTCATTTCATGGGTTGGCT
* *
13361274 CAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACC
518 CAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCTA-TCTAAGATCAGACC
*
13361338 AGACCGAGGGTTAC-AGTAGTAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGAATCGAGCCG
582 AGACCGAGGGTTACGA-TAGTAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGAACCGAGCCG
* * *
13361402 ATCCCTGGCTTGCACATTCTACCTCTTCGGCTAGCCTCTCCGACCGATTGAGCGCCCGTAC
646 ATCCCTAGCTTGCACATTCTACCTCTTCGGCCAACCTCTCCGACCGATTGAGCGCCCGTAC
* *
13361463 GCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
* * * *
13361528 CCCAGTCTAAGATCAAACCAGA-CTGAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGAC
66 CCCAGTCTAAGATC-AACCAGATC-GAGGGTTGCGGCAGTAGGATCGGTAGCACGCAG-GGGGAC
* * * * * * ***
13361592 CGAGCTGATCCCCGCCTTGCGCATTCTGCCTCTCCGGCCGCCTGAGCGTCTGCACGCTTATTTCG
128 CGGGCCGATCCCCGTCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCG
*
13361657 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGC
193 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13361698 ATACGAAGTT
Statistics
Matches: 818, Mismatches: 116, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
705 1 0.00
706 319 0.39
707 297 0.36
708 106 0.13
709 95 0.12
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (706 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
CCCAGTCTAAGATCAACCAGATCGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGGGGGACCGG
GCCGATCCCCGTCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCGTGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCAAGGGTTGTGGCAGC
GAGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCC
AGCTCAACGCCCATACACTCGTTTCATGGATTGAACTAGGCATACGAAGTTCATTCCCAATCTAG
GATCAGACCAAACCGAGGGTTACGGTAGTAGGATCGATAGCACGTAAGGTGGACCGACCAATCCC
CGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCACCGCACACTCATTTCATGGGTTGGCTCAG
GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCTATCTAAGATCAGACCAGAC
CGAGGGTTACGATAGTAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGAACCGAGCCGATCCC
TAGCTTGCACATTCTACCTCTTCGGCCAACCTCTCCGACCGATTGAGCGCCCGTAC
Found at i:13361517 original size:26 final size:26
Alignment explanation
Indices: 13361486--13361538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13361476 GTTGACTTAG
*
13361486 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13361512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13361538 G
1 G
13361539 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13361672 original size:184 final size:181
Alignment explanation
Indices: 13361435--13362089 Score: 515
Period size: 184 Copynumber: 3.4 Consensus size: 181
13361425 TCTTCGGCTA
* ** * * *
13361435 GCCTCTCCGACCGATTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCA
1 GCCTCTCCGGCCGCCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
13361500 TCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACGAC
66 T-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-GACTGAGGGTTACGAC
13361564 AGCAGGATCGGCAGCACGCAGAGGGGACCGAGCTGATCCCCGCCTTGCGCATTCT
129 AGCAGGATCGGCAGCACGCAG-GGGGACCG-GCTGATCCCCGCCTTGCGCATTCT
* * * * * *
13361619 GCCTCTCCGGCCGCCTGAGCGTCTGCACGCTTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCGGCCGCCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
13361684 TTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGTACCAAGGGTTGCGACA
66 TCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCG-ACTGAGGGTT---AC-
* ** * * * *
13361749 ATAGGACCAGTAGCAGGATCAGCAGCACATAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTC
126 ----GA-C---AGCAGGATCGGCAGCACGCA-GGGGGA-CCGGCTGATCCCCGCCTTGCGCATTC
13361814 T
181 T
* * *
13361815 ACCTCTCTGGCCGGCCTCTCCGATTCGATTGAACGCCCGCACGCTTGTTTCATCGGTTGACTTAG
1 -GC-CTCT--CCGG-C-CGCC---T-GA--G--CGCCCGCACGCTTGTTTCATGGGTTGACTTAG
* * * *
13361880 ACATACGAAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAG
52 GCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-GAC
* * ** * *
13361944 TGAAGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGACCTGG-TCGATCCCTGCCTTGCGCAT
116 TGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGACC-GGCT-GATCCCCGCCTTGCGCAT
*
13362008 TTT
179 TCT
** * * ** ** * *
13362011 GCCTCTCCGATCGGCTGAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCGGCCGCCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
*
13362076 TTCCATGTCTAAGC
66 TCCCATGTCTAAGC
13362090 CTCAGTCGGA
Statistics
Matches: 363, Mismatches: 74, Indels: 69
0.72 0.15 0.14
Matches are distributed among these distances:
182 40 0.11
183 12 0.03
184 101 0.28
186 2 0.01
187 3 0.01
190 2 0.01
192 5 0.01
193 1 0.00
194 4 0.01
195 2 0.01
196 68 0.19
197 20 0.06
198 4 0.01
200 4 0.01
201 2 0.01
202 3 0.01
205 1 0.00
206 3 0.01
208 1 0.00
209 43 0.12
210 42 0.12
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.24
Consensus pattern (181 bp):
GCCTCTCCGGCCGCCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGACTGAGGGTTACGACAG
CAGGATCGGCAGCACGCAGGGGGACCGGCTGATCCCCGCCTTGCGCATTCT
Found at i:13361901 original size:393 final size:393
Alignment explanation
Indices: 13361120--13362089 Score: 1285
Period size: 393 Copynumber: 2.5 Consensus size: 393
13361110 ATTGAGCTAG
* * * * *
13361120 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
13361185 GTACGTA-AGGTGGACCGATC-AATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCAC
66 GCACGCAGAGG-GGACCGAGCTGATCCCCGCCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
* * * *
13361248 CCGCACGCTCATTTCATGGGTTGGCTCAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGAAG
* * *
13361313 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGTAGGACCAGCAGCAGGATCGA
195 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGCAATAGGACCAGCAGCAGGATCGA
* * *
13361378 CAGCACGTAGGGGGAATCGAGCCGATCCCTGGCTTGCACATTCTACCTCTTCGGCTAGCCTCTCC
260 CAGCACATAGGGGGAATCGAGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCCTCTCC
* * * * * *
13361443 GACCGATTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATCCCCAGT
325 GACCGATTGAACGCCCGCACGCTCGTTTCATCGGTTGACTTAGACATACGAAGTTCATCCCCAGT
13361508 CTAA
390 CTAA
* * ** *
13361512 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGTAGCAGGATCGACA
** * **
13361577 GCACGCAGAGGGGACCGAGCTGATCCCCGCCTTGCGCATTCTGCCTCTCCGGCCGCCTGAGCGTC
66 GCACGCAGAGGGGACCGAGCTGATCCCCGCCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
* * *
13361642 TGCACGCTTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCATACGAAGT
131 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGAAGT
* *
13361707 TCATTCCCAGTCTAAGATCAGACC-GTACCAAGGGTTGC-GACAATAGGACCAGTAGCAGGATC-
196 TCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTACAG-CAATAGGACCAGCAGCAGGATCG
* * ** *
13361769 AGCAGCACATAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTC-TCTGGCCGGCCTC
259 A-CAGCACATAGGGGGAATCGAGCCGATCCCCGGCTTGCACATTCTACCTCTTC-GGCCAGCCTC
* *
13361833 TCCGATTCGATTGAACGCCCGCACGCTTGTTTCATCGGTTGACTTAGACATACGAAGTTCAT-CC
322 TCCGA-CCGATTGAACGCCCGCACGCTCGTTTCATCGGTTGACTTAGACATACGAAGTTCATCCC
13361897 CAGTCTAA
386 CAGTCTAA
* * *
13361905 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAGTGAAGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGTAGCAGGATCGACA
* *
13361970 GCACGCAG-GGGGACCTG-G-TCGATCCCTGCCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCA
66 GCACGCAGAGGGGACC-GAGCT-GATCCCCGCCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
* * *
13362032 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13362090 CTCAGTCGGA
Statistics
Matches: 499, Mismatches: 70, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
391 1 0.00
392 168 0.34
393 282 0.57
394 48 0.10
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (393 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGAGGGGACCGAGCTGATCCCCGCCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGAAGT
TCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGCAATAGGACCAGCAGCAGGATCGAC
AGCACATAGGGGGAATCGAGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCCTCTCCG
ACCGATTGAACGCCCGCACGCTCGTTTCATCGGTTGACTTAGACATACGAAGTTCATCCCCAGTC
TAA
Found at i:13361911 original size:25 final size:26
Alignment explanation
Indices: 13361881--13361931 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
13361871 TTGACTTAGA
13361881 CATACGAAGTTCA-TCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
*
13361906 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
13361932 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:13362222 original size:158 final size:157
Alignment explanation
Indices: 13361961--13362258 Score: 393
Period size: 158 Copynumber: 1.9 Consensus size: 157
13361951 TGCGGTAGCA
* * * * *
13361961 GGATCGACAGCACGCAGGGGGACCTGGTCGATCCCTGCCTTGCGCATTTTGCCTCTCCGATCGGC
1 GGATCGACAGCACGCAGGGGGACCTGGGCGATCCCCGACTTGCGCATTTTACCTCTCCGATCAGC
* ** * *
13362026 TGAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCC
* *
13362091 TCAGTCGGACCGAAGGTTTTGGCAGCG
131 CCAGCCGGACCGAAGGTTTTGGCAGCG
* * *
13362118 GGATCGACAGCACGCAGAGGGGGACC-GGGCGATCCCCGACTTGTGCATTTTACCTCTTCG-GCT
1 GGATCGACAGCACGC--AGGGGGACCTGGGCGATCCCCGACTTGCGCATTTTACCTCTCCGATC-
* * *
13362181 AGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAA
63 AGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAA
13362246 GCCCCAGCCGGAC
128 GCCCCAGCCGGAC
13362259 TGCAGGCTGC
Statistics
Matches: 120, Mismatches: 18, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
157 16 0.13
158 95 0.79
159 9 0.08
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
GGATCGACAGCACGCAGGGGGACCTGGGCGATCCCCGACTTGCGCATTTTACCTCTCCGATCAGC
TGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCC
CCAGCCGGACCGAAGGTTTTGGCAGCG
Found at i:13362434 original size:26 final size:26
Alignment explanation
Indices: 13362401--13362454 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13362391 TGGGTTGACT
*
13362401 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
13362427 TAGGCATACAGAGTTCATTCTCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
13362453 TA
1 TA
13362455 AGATCATACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:13363151 original size:26 final size:26
Alignment explanation
Indices: 13363115--13363167 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13363105 GTTGACTTAG
* *
13363115 GCATACGGAGTTCA-TCCCCTATCTAA
1 GCATACAGAGTTCACT-CCCAATCTAA
13363141 GCATACAGAGTTCACTCCCAATCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
13363167 G
1 G
13363168 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAATCTAA
Found at i:13363930 original size:158 final size:164
Alignment explanation
Indices: 13363715--13364072 Score: 367
Period size: 170 Copynumber: 2.2 Consensus size: 164
13363705 CGTGTTTCAT
* * * *
13363715 GGGTTGACTTAGGCATACGGAGTCCATTCCTAGTCTAAGATCAGACCAGACCAAGGG-T-T-GC-
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTAGCG
* * *
13363776 GA-TAG-CAGTATCGATAGCACGCAAGGGG-GACCGGG-TCGATCCCCGGCTTACGCATTCTGCC
66 GACCAGACAGGATCGACAGCACG-AAGGGGAGACCGGGCT-GATCCCCGGCTTACGCATTCTGCC
* * *
13363837 TCTCC-GGTCGACTGAGTTCCCACACGCTCATTTCGT
129 TCTCCAGCT-GACTGAGCTCCCACACGCTCATTTCGA
* * * ***
13363873 TGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATC-GAATTGAGGGTTACGGT
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAG-ACCAAGGGTT---GT
* *
13363937 AGCGGGACCAGCAACAGGATCGGCAGCACGTAGGGGAGACCGGGCTGATCCCCGGCTTACGCATT
62 AGC-GGACCAG--ACAGGATCGACAGCACGAAGGGGAGACCGGGCTGATCCCCGGCTTACGCATT
* **
13364002 CTGCCTCTCCAGCTGGCTGAGCTCCCGTACGCTCATTTCGA
124 CTGCCTCTCCAGCTGACTGAGCTCCCACACGCTCATTTCGA
13364043 GGGTTGGCTTAGGCATACGGAGTTCATTCC
1 GGGTTGGCTTAGGCATACGGAGTTCATTCC
13364073 ATGTCTAAGC
Statistics
Matches: 161, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
157 1 0.01
158 45 0.28
159 1 0.01
163 1 0.01
164 2 0.01
166 2 0.01
167 2 0.01
169 5 0.03
170 99 0.61
171 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (164 bp):
GGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTAGCG
GACCAGACAGGATCGACAGCACGAAGGGGAGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTC
TCCAGCTGACTGAGCTCCCACACGCTCATTTCGA
Found at i:13364580 original size:26 final size:26
Alignment explanation
Indices: 13364550--13364602 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13364540 GTTGGCTTAG
13364550 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACGGAGTTCATT-CATAGTCTAA
*
13364576 GCATACGGAGTTCCTTCATAGTCTAA
1 GCATACGGAGTTCATTCATAGTCTAA
13364602 G
1 G
13364603 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCATAGTCTAA
Found at i:13365302 original size:26 final size:26
Alignment explanation
Indices: 13365273--13365325 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13365263 GTTGACATAG
*
13365273 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13365299 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13365325 G
1 G
13365326 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13365615 original size:159 final size:159
Alignment explanation
Indices: 13365416--13365802 Score: 443
Period size: 159 Copynumber: 2.4 Consensus size: 159
13365406 GCCTTTTCGG
* *
13365416 TCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCT
* * ** * * *
13365481 AAGCCCCAATCGGACCGAGGGCTGTGGTAGCGGGACCGACAGCACACAGAGGGGGACCGGGGCGA
66 AAGCCCAAATCAGACCGAGGGCTGCAGTAGCAGGACCGACAGCACACAGAGGGGGACCAGGCCGA
**
13365546 TCCCCGACTTCCGTATTATGCCTCTCCGA
131 TCCCCGACTTCCACATTATGCCTCTCCGA
* * * * *
13365575 TCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CTCAGTC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCT-TGTC
** * * * ** *
13365639 TAAGATCAAATCAGACCGAGGGTTGCAGTAGCAGGATCGATAGCATGCAGGGGGGGACCAGGCCG
65 TAAGCCCAAATCAGACCGAGGGCTGCAGTAGCAGGACCGACAGCACACAGAGGGGGACCAGGCCG
* * * * *
13365704 ATTCCCGACTTGCACATTCTGCCTTTCCGG
130 ATCCCCGACTTCCACATTATGCCTCTCCGA
* * * * * *
13365734 TCAGCTGAGCGCCCGTATGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCT
13365799 AAGC
66 AAGC
13365803 ATACGAAGTT
Statistics
Matches: 185, Mismatches: 41, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
158 2 0.01
159 182 0.98
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCT
AAGCCCAAATCAGACCGAGGGCTGCAGTAGCAGGACCGACAGCACACAGAGGGGGACCAGGCCGA
TCCCCGACTTCCACATTATGCCTCTCCGA
Found at i:13365946 original size:183 final size:185
Alignment explanation
Indices: 13365616--13365985 Score: 503
Period size: 183 Copynumber: 2.0 Consensus size: 185
13365606 GTTGACTTAG
* * * * * *
13365616 GCATACGGAGTTCATTCTCAGTCTAAGATCAAATCAGACCGAGGGTTGCAGTAGCAGGATCGATA
1 GCATACGAAGTTCATTCTCAATCTAAGATCAAACCAGACCGAAGGTTACAGCAGCAGGATCGATA
* * *
13365681 GCATGCAGGGGGGGACCAGGCCGATTCCCGACTTGCACATTCTGCCTTTCCGGTCAGCTGAGCGC
66 GCATGCAGGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCAGCTGAGCGC
* * *
13365746 CCGTATGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGTACGCTCATTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCGAA
* * *
13365801 GCATACGAAGTTCATTC-CAATCTAAGATCAGACCAGACCGAAGGTTACAGCAGTAGGATCGGTA
1 GCATACGAAGTTCATTCTCAATCTAAGATCAAACCAGACCGAAGGTTACAGCAGCAGGATCGATA
* * * * * *
13365865 GCATGCA-GGGGGGATCGGGCCGATCCCC-AGTTTGCGCATTCTGCCTCTCCGATCGGTTGAGCG
66 GCATGCAGGGGGGGACCAGGCCGATCCCCGA-CTTGCACATTCTGCCTCTCCGATCAGCTGAGCG
* *
13365928 CCCGTACGCTTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAA
130 CCCGTACGCTCATTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCGAA
13365984 GC
1 GC
13365986 CCCAGTCGAA
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
182 1 0.01
183 98 0.61
184 46 0.29
185 16 0.10
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (185 bp):
GCATACGAAGTTCATTCTCAATCTAAGATCAAACCAGACCGAAGGTTACAGCAGCAGGATCGATA
GCATGCAGGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCAGCTGAGCGC
CCGTACGCTCATTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCGAA
Found at i:13366692 original size:316 final size:314
Alignment explanation
Indices: 13366107--13366960 Score: 977
Period size: 316 Copynumber: 2.7 Consensus size: 314
13366097 CGACCGGATG
* * * * *
13366107 AGCGCCCGCATGCTCGTTTCTTGGGTTGACTTAGGCATATAGAGTTGATTCCCAGTCTAAGATAG
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-C
* * * *
13366172 GAT-AGAACTGAGGGTTGCAGCATCAGGATCGACAGCACACAAGGGGGGACCGGGTCGATCCTCA
65 GATCAGAAC-GAGGGTTGCGGCAGCAGGATCGACAGCAC-GAAGGGGGGACCGGGTCGAT-CTCG
* * * * * *
13366236 GCTTACGCATTCTGCCTCTCAGGCCGGCTGAGCACCCGCATGCTCGTTTCTGAGGTTGGCTTAGG
127 GCTTGCACATTCTACCTTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCTG-GGTTGGCTTAGG
* ** * * * *
13366301 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGAATGAAGGTTGTGGCGGCGGGATCGGAAG
191 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACGAAGGTTGTCGCGGCGAGATCCGAAG
* * *
13366366 CCCTCAGAGGGGGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGCTGGCTC
256 CACGCAGAGGGGGACCGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGGCTGGCTC
* * * *
13366425 AGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCG
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
13366490 TATCGGATCGAGGGTTGCGGTAGCA-GATCGACAGCACGTAGGGGGGATCGGG-CCAGTCTTCGG
66 -ATCAGAACGAGGGTTGCGGCAGCAGGATCGACAGCACGAAGGGGGGACCGGGTCGA-TC-TCGG
* * *
13366553 CTTGCACATTCTACCTTTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
128 CTTGCACATTCTACCTTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC-TGGGTTGGCTTAGGC
* * *
13366618 ATACGGAGTTCATTCCATGTCTAAGCCTCAGCCGGACCGAGGGTTGTCGCAGG-GAGA-CCGACA
192 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACGAAGGTTGTCGC-GGCGAGATCCGA-A
* * * *
13366681 GCAGGCAGAGGGGGATCGGGTTGATCCCTGGCTTGCACATTATGCCTCTCCGGCTGGCTC
255 GCACGCAGAGGGGGACCGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGGCTGGCTC
13366741 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-
* * * * *
13366806 GATCA-AACCAAGGGTTACGACAGCAGGATCGACATCACGCAA-GGGGGACCGGGTCGATCCCTG
65 GATCAGAA-CGAGGGTTGCGGCAGCAGGATCGACAGCACG-AAGGGGGGACCGGGTCGATCTC-G
* * * *
13366869 GCTTGCACATTCTACCTTTTCT-GCCGGCTGAGCGCCCGCACGTTCATTTCATGGGTTGGCTTTG
127 GCTTGCACATTCTACC-TTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC-TGGGTTGGCTTAG
* ** *
13366933 TCATATAGAGTTAATTCCATGTCTAAGC
190 GCATACGGAGTTCATTCCATGTCTAAGC
13366961 ATACGGAGTT
Statistics
Matches: 451, Mismatches: 71, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
315 7 0.02
316 245 0.54
317 117 0.26
318 79 0.18
319 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (314 bp):
AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG
ATCAGAACGAGGGTTGCGGCAGCAGGATCGACAGCACGAAGGGGGGACCGGGTCGATCTCGGCTT
GCACATTCTACCTTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACGAAGGTTGTCGCGGCGAGATCCGAAGCACGC
AGAGGGGGACCGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGGCTGGCTC
Found at i:13366820 original size:159 final size:157
Alignment explanation
Indices: 13366105--13366959 Score: 714
Period size: 159 Copynumber: 5.4 Consensus size: 157
13366095 TCCGACCGGA
* * * *
13366105 TGAGCGCCCGCATGCTCGTTTCTTGGGTTGACTTAGGCATATAGAGTTGATTCCCA-GTCTAAGA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGA
* * * *
13366169 T-AGGATAGAACTGAGGGTTGCAGCATCAGGATCGACAGCACACA-AGGGGGGACCGGGTCGAT-
65 TCA-GATCGAACCGAGGGTTGC-GCAGCA-GATCGACAGCACGCAGA-GGGGGACCGGGTCGATC
* * * * *
13366231 CCTCAGCTTACGCATTCTGCCTCTCAGGCCGGC
126 CCT-GGCTTGCACATTCTGCCTCTCCGGCTGGC
* * * **
13366264 TGAGCACCCGCATGCTCGTTTC-TGAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATG-GGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG-
** * * * * * * * * *
13366328 CCCAGTTGGAA-TGAAGGTTGTGGCGGCGGGATCGGA-AGCCCTCAGAGGGGGACCGGGTCGATC
64 ATCAGATCGAACCGAGGGTTG-CGCAGC-AGATC-GACAGCACGCAGAGGGGGACCGGGTCGATC
* * *
13366391 CCTGACTTGCGCATTATGCCTCTCCGGCTGGC
126 CCTGGCTTGCACATTCTGCCTCTCCGGCTGGC
* * * * *
13366423 TCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GTCTAAGA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGA
* * * * * *
13366487 TC-GTATCGGATCGAGGGTTGCGGTAGCAGATCGACAGCACGTAG-GGGGGATCGGG-CCAGT-C
65 TCAG-ATCGAACCGAGGGTTGC-GCAGCAGATCGACAGCACGCAGAGGGGGACCGGGTCGA-TCC
* * * * *
13366548 TTCGGCTTGCACATTCTACCTTTCTGGCTGGT
127 CT-GGCTTGCACATTCTGCCTCTCCGGCTGGC
* * * *
13366580 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG-A
* * * * * * *
13366645 TCAG-CCGGACCGAGGGTTGTCGCAGGGAGACCGACAGCAGGCAGAGGGGGATCGGGTTGATCCC
65 TCAGATCGAACCGAGGGTTG-CGCA-GCAGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCC
*
13366709 TGGCTTGCACATTATGCCTCTCCGGCTGGC
128 TGGCTTGCACATTCTGCCTCTCCGGCTGGC
*
13366739 TCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGA
* * * *
13366803 TCAGATCAAACCAAGGGTTACGACAGCAGGATCGACATCACGCA-AGGGGGACCGGGTCGATCCC
65 TCAGATCGAACCGAGGGTTGCG-CAGCA-GATCGACAGCACGCAGAGGGGGACCGGGTCGATCCC
* * * * *
13366867 TGGCTTGCACATTCTACCTTTTCTGCCGGC
128 TGGCTTGCACATTCTGCCTCTCCGGCTGGC
* * * * * * *
13366897 TGAGCGCCCGCACGTTCATTTCATGGGTTGGCTTTGTCATATAGAGTTAATTCCATGTCTAAG
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
13366960 CATACGGAGT
Statistics
Matches: 559, Mismatches: 107, Indels: 61
0.77 0.15 0.08
Matches are distributed among these distances:
156 7 0.01
157 107 0.19
158 138 0.25
159 284 0.51
160 22 0.04
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGAT
CAGATCGAACCGAGGGTTGCGCAGCAGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGG
CTTGCACATTCTGCCTCTCCGGCTGGC
Found at i:13368258 original size:26 final size:26
Alignment explanation
Indices: 13368221--13368273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13368211 GTTGACCTAG
* *
13368221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
13368247 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13368273 G
1 G
13368274 ATGGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13368599 original size:26 final size:26
Alignment explanation
Indices: 13368563--13368615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13368553 GTTGACTTAG
*
13368563 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
13368589 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13368615 G
1 G
13368616 ATGTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13368629 original size:342 final size:338
Alignment explanation
Indices: 13367913--13368641 Score: 980
Period size: 342 Copynumber: 2.1 Consensus size: 338
13367903 TAGGCATACG
* * *
13367913 GAGTTCATTCCCAGTCTAAGATCGGATCGGAACCGAGGGTTGCAGCAGCATGATCGACAGCACGC
1 GAGTTCATTCCCAATCTAAGAT-GGATCGG-ACCGAGGGTTGCAGCAGCAGGATCGACAGCACAC
* * ** * * * *
13367978 AGGGGTATCGAGTCGATACCCGGCTTGTGCATTCTACCTCTCCGACTGACTGAGCATCCGCACGC
64 AGGGGGATCGAGGCGATACCCGGCTTGCACATTCTACCCCTCCGACTGACTCAGCACCCGCACAC
* * * * * *
13368043 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGATTGAGA
129 TCATTTCATGGATTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCGAGACTGAGA
* * ** * *
13368108 GTTGTGGCAGTGGGAGCGGTAGCACACAGAGGGGCACCGAGCCGATCCCAGGCTTGCTCATTATG
194 GTTGTGGCAGCGGGACCAATAGCACACAGAGGCGCACCGAGCCGATCCCAGGCTTGCGCATTATG
*
13368173 CCTCTACGGCAGGCAGCACCCACAAGCTCGTTTCTTGGGTTGACCTAGGCATACGGAGTTCATCC
259 CCTCTACGGCAGGCAGCACCCACAAGCTCGTTTCTTGGGTTGACCTAGGCATACAGAGTTCATCC
*
13368238 CCAGTCTAAGCATAC
324 CCAGTCTAAGCATAA
** *
13368253 GAAGTTCATTCCCAATCTAAGATGGGATCGGACCGAGGGTTGCAGCAGCAGGATCGGTAGCACAT
1 G-AGTTCATTCCCAATCTAAGAT-GGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACAC
*
13368318 AGGGGGGGA-CGAGGCTGAT-CCTCGGCTTGCACATTCTACCCCTCTGACTGACTCAGCACCCGC
64 A--GGGGGATCGAGGC-GATACC-CGGCTTGCACATTCTACCCCTCCGACTGACTCAGCACCCGC
*
13368381 ACACTCATTTCATGGATTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGA-AC
125 ACACTCATTTCATGGATTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCC-ACCGAGAC
* ** * *
13368445 TGAGGGTTGTGGCAGCGGGACCAATAGCACGTAGAGAGCG-ACCGGGCTGATCCCAGGCTTGCGC
189 TGAGAGTTGTGGCAGCGGGACCAATAGCACACAGAG-GCGCACCGAGCCGATCCCAGGCTTGCGC
* *
13368509 ATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATACAGAGT
253 ATTATGCCTCTACGGCAGGCAGCACCCACAAGCTCGTTTCTTGGGTTGACCTAGGCATACAGAGT
13368574 TCATCCCCAGTCTAAGCATATA
318 TCATCCCCAGTCTAAGCATA-A
*
13368596 GAGTTCATTCCCAATCTAAGATGTGACCGGACCGAGGGTTGCAGCA
1 GAGTTCATTCCCAATCTAAGATG-GATCGGACCGAGGGTTGCAGCA
13368642 ATAGGACCGA
Statistics
Matches: 341, Mismatches: 39, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
340 31 0.09
341 35 0.10
342 269 0.79
343 6 0.02
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (338 bp):
GAGTTCATTCCCAATCTAAGATGGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACACAG
GGGGATCGAGGCGATACCCGGCTTGCACATTCTACCCCTCCGACTGACTCAGCACCCGCACACTC
ATTTCATGGATTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCGAGACTGAGAGT
TGTGGCAGCGGGACCAATAGCACACAGAGGCGCACCGAGCCGATCCCAGGCTTGCGCATTATGCC
TCTACGGCAGGCAGCACCCACAAGCTCGTTTCTTGGGTTGACCTAGGCATACAGAGTTCATCCCC
AGTCTAAGCATAA
Found at i:13370095 original size:167 final size:167
Alignment explanation
Indices: 13369884--13370259 Score: 725
Period size: 167 Copynumber: 2.3 Consensus size: 167
13369874 GAAGCACGTA
13369884 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCTGTACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCTGTACGC
13369949 TTGTACGCCCGATTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
66 TTGTACGCCCGATTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
13370014 GACCGAGGGTTGTGGCAGCGGGATCGACAACATGCAG
131 GACCGAGGGTTGTGGCAGCGGGATCGACAACATGCAG
*
13370051 AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCTGTACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCTGTACGC
13370116 TTGTACGCCCGATTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
66 TTGTACGCCCGATTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
13370181 GACCGAGGGTTGTGGCAGCGGGATCGACAACATGCAG
131 GACCGAGGGTTGTGGCAGCGGGATCGACAACATGCAG
* *
13370218 AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
13370260 CGGTCGGCTC
Statistics
Matches: 205, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
167 205 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.22
Consensus pattern (167 bp):
AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCTGTACGC
TTGTACGCCCGATTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GACCGAGGGTTGTGGCAGCGGGATCGACAACATGCAG
Found at i:13370720 original size:26 final size:26
Alignment explanation
Indices: 13370673--13370725 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13370663 GTTGACTTGG
* *
13370673 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13370699 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13370725 G
1 G
13370726 ATCAGATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13371674 original size:26 final size:26
Alignment explanation
Indices: 13371638--13371689 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13371628 TTGACTTAGA
*
13371638 CATATGGAGTTCATCCCCAATCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
* *
13371664 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
13371690 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAG
Found at i:13373872 original size:25 final size:26
Alignment explanation
Indices: 13373844--13373895 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13373834 GTTGACCTAG
*
13373844 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13373869 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13373895 G
1 G
13373896 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13374221 original size:159 final size:159
Alignment explanation
Indices: 13373932--13374221 Score: 345
Period size: 159 Copynumber: 1.8 Consensus size: 159
13373922 GCACGCAGGG
* * * * *
13373932 GGGACCGGGTTGATCCTCGGCTTGTGCATTCTGACTCTTCGGCCGACTGAGCCCCCGCATGCTCA
1 GGGACCGGGTTGATCCTCGGCTTGCGCATTATGACTCTCCGGCCGACTCAGCCCCCGCACGCTCA
* * * * *
13373997 TTTCATGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
66 TTTCATGGGTTGACATAGGCATAGCGAATTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTT
13374062 GTGGCAGCGAGACCGACAGCATGTAGAGA
131 GTGGCAGCGAGACCGACAGCATGTAGAGA
* * * * **
13374091 GGGACTGGGTTGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGCACGCT-A
1 GGGACCGGGTTGATCCTCGGCTTGCGCATTATGACTCTCCGGCCGACTCAGCCCCCGCACGCTCA
* * *
13374155 GTTTCATGGGTTGACATAGGCATA-CGAAGTTCCTTCCCA-GTCTAAG-ATCAGGCCGGACTGAG
66 -TTTCATGGGTTGACATAGGCATAGCGAA-TTCATT-CCATGTCTAAGCACCA-GCCGGACCGAG
13374217 GGTTG
127 GGTTG
13374222 CGACAGCAGG
Statistics
Matches: 108, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
158 6 0.06
159 99 0.92
160 3 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (159 bp):
GGGACCGGGTTGATCCTCGGCTTGCGCATTATGACTCTCCGGCCGACTCAGCCCCCGCACGCTCA
TTTCATGGGTTGACATAGGCATAGCGAATTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTT
GTGGCAGCGAGACCGACAGCATGTAGAGA
Found at i:13375184 original size:26 final size:26
Alignment explanation
Indices: 13375154--13375206 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13375144 GTTGACTTAG
13375154 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
13375180 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13375206 G
1 G
13375207 ATCGGACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13376271 original size:26 final size:26
Alignment explanation
Indices: 13376221--13376273 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13376211 GTTGACTTAG
*
13376221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
13376247 GCATACGGTGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13376273 G
1 G
13376274 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13376952 original size:26 final size:26
Alignment explanation
Indices: 13376923--13376975 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13376913 GTTGACTTAG
13376923 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13376949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13376975 G
1 G
13376976 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13377332 original size:26 final size:26
Alignment explanation
Indices: 13377302--13377354 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13377292 GTTGACTTAG
13377302 GCATAC-AGAGTTCA-TCCTCAGTCTAA
1 GCATACGA-AGTTCATTCC-CAGTCTAA
13377328 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13377354 G
1 G
13377355 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13378834 original size:26 final size:26
Alignment explanation
Indices: 13378805--13378857 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13378795 CTGGTCCGAT
* *
13378805 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13378831 CTTAGACTGGGGATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13378857 C
1 C
13378858 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13379235 original size:26 final size:26
Alignment explanation
Indices: 13379199--13379251 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13379189 CCAGTTCGAT
13379199 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13379225 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13379251 C
1 C
13379252 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13379594 original size:392 final size:394
Alignment explanation
Indices: 13378801--13379617 Score: 925
Period size: 392 Copynumber: 2.1 Consensus size: 394
13378791 TGGTCTGGTC
* *
13378801 CGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAGTCCATATGCCTAAGTCA
1 CGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCA
* * *
13378866 ACCCATGAAATGAACGTGCGGGTGCATAGCCAACTAGAAATGCCGGCCAGAGAGGCAGAATGTGC
66 ACCCATGAAATGAACATGCGGGTGCATAACCAACTAGAAAGGCCGGCCAGAGAGGCAGAATGTGC
* * * * * ** * * *
13378931 AAGCTGGGGATTGGCCTGCTTCCCCCCTGTGTGCTACCGATCCTGCTGCTGGTCCTGCTATCGTA
131 AAGCCGGGGATCGACCCGCGTCCCCCCTACGTGCTACCGATCCTGCTACTGGTCCTACTACCGTA
* * *
13378996 AACCTCGGTTTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTC
196 AACCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTC
** ** * *
13379061 CATATTCCTAAGCCAACCCACGAAACGAGCATGCGGGCGTTCAGCCAGTCGAAGAGGCAGAATGC
261 CATAAGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCTCAACCAGTCGAAGAGGCAGAATGC
* * * * * * *
13379126 GCAAGTCGGGGATCGGCTCGGTCCCCCCCACGTGCTCTCGATACTACTGCGACAACACTCGATCC
326 ACAAGCCGAGGATCGACCCGATCCCCCCCACGTGCTCTCGATACTACTGCCACAACACTCGATCC
*
13379191 AGTT
391 AATT
* * *
13379195 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCA
1 CGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCA
* * * * * ** *
13379260 ACCCATGAAATGAGCATTC-GG-GCACTCAACCGAC-GGAGAGGTTGGTCAGGAGAGGCAGAATG
66 ACCCATGAAATGAACATGCGGGTGCA-T-AACCAACTAGAAAGGCCGGCCA-GAGAGGCAGAATG
*
13379322 CT-CAAGCCGGGGATCGACCCG-GTCCCCCTTACGTGCTA-CGATCCTGCTACTGGTCCTACTAC
128 -TGCAAGCCGGGGATCGACCCGCGTCCCCCCTACGTGCTACCGATCCTGCTACTGGTCCTACTAC
* *
13379384 CGTAAACCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACATGGAATGA
192 CGTAAACCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGA
* * * * * * * *
13379449 ACTCCGTAAGCCTAAGCCAACCCACGGAATGAGCGTGTGAACGCTCAACC-GGCTGGAGAGGTAG
257 ACTCCATAAGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCTCAACCAGTC-GAAGAGGCAG
**** * * * *
13379513 AATGCACAAGCCGAGGA-CTGACCCGATCCCCTTTGCGTGCTGTCGATCCTGCTGCCACAACCCT
321 AATGCACAAGCCGAGGATC-GACCCGATCCCCCCCACGTGCTCTCGATACTACTGCCACAACACT
13379577 C-AGTCCAA-T
385 CGA-TCCAATT
*
13379586 CTGATCTTAAACTGGGAATGAACTTCGTATGC
1 C-GATCTTAAACTGGGAATGAACTCCGTATGC
13379618 CTAAGTCAAC
Statistics
Matches: 352, Mismatches: 63, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
391 6 0.02
392 211 0.60
393 24 0.07
394 110 0.31
395 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (394 bp):
CGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCA
ACCCATGAAATGAACATGCGGGTGCATAACCAACTAGAAAGGCCGGCCAGAGAGGCAGAATGTGC
AAGCCGGGGATCGACCCGCGTCCCCCCTACGTGCTACCGATCCTGCTACTGGTCCTACTACCGTA
AACCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTC
CATAAGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCTCAACCAGTCGAAGAGGCAGAATGC
ACAAGCCGAGGATCGACCCGATCCCCCCCACGTGCTCTCGATACTACTGCCACAACACTCGATCC
AATT
Found at i:13379845 original size:159 final size:158
Alignment explanation
Indices: 13379430--13379882 Score: 407
Period size: 159 Copynumber: 2.9 Consensus size: 158
13379420 TGAACTTTGT
* * * **
13379430 ATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGGAATGAGCGTGTGAACGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * * * * * *
13379495 AACCGGCTGGAGAGGTAGAATGCACAAGCCGAGGA-CTGACCCGAT-CCCCTTTGCGTGCTGTCG
66 AA-CAGCCGGAGAGGTAGAATGCGCAAGCAG-GGATCAG-CCCGGTCCCCCTCTGCGTGCTGCCG
*
13379558 ATCCTGCTGCCACAACCCTCAGTCCAATCTG
128 ATCCTGCTGCAACAACCCTCAGTCCAATCTG
* * * * * *
13379589 AT-CTTAAAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACT
1 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCT
* * * * * *
13379652 AAACCGACCGGAGAGGCATAATACGTAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCC-
65 CAACAG-CCGGAGAGGTAGAATGCGCAAG-CAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCG
* * ***
13379716 AGTCCTGTTGCAACAACCCTCATTCTGGT-TG
128 A-TCCTGCTGCAACAACCCTCAGTCCAATCTG
* * * *
13379747 GTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * * * *
13379812 AGCTAGCCGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCTCAGTCCCCC-CTGCATGCTGTCGA
66 AAC-AGCCGGAGAGGTAGAATGCGCAAG-CAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGA
13379876 TCCTGCT
129 TCCTGCT
13379883 ATCGCAACCC
Statistics
Matches: 230, Mismatches: 54, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 94 0.41
159 131 0.57
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
AACAGCCGGAGAGGTAGAATGCGCAAGCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATC
CTGCTGCAACAACCCTCAGTCCAATCTG
Found at i:13380089 original size:12 final size:12
Alignment explanation
Indices: 13380074--13380104 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
13380064 GTGCTATCGA
13380074 TCCTGCTGTTGG
1 TCCTGCTGTTGG
13380086 TCCTGCTGTTGG
1 TCCTGCTGTTGG
13380098 TCCTGCT
1 TCCTGCT
13380105 ACTGTAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.29, G:0.29, T:0.42
Consensus pattern (12 bp):
TCCTGCTGTTGG
Found at i:13380489 original size:719 final size:706
Alignment explanation
Indices: 13379039--13381369 Score: 1889
Period size: 719 Copynumber: 3.3 Consensus size: 706
13379029 GAACTCTGTA
* * * *
13379039 TGCTTAGACATGGAATGAACTCCATATTCCTAAGCCAACCCACGAAACGAGCATGCGGGCGTTCA
1 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
* * ** * *
13379104 GCCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCCACGTGCTCTCGATA
66 GCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTC-GTCCCCCCTGCGTGCTGTCGATC
* * * * **
13379169 CTACTGCGACAACACTCGATCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
130 CTGCTACG-CAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
13379233 GGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCATTCGGGCACTCAACCGACGGAG
193 GGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAACATGCGGGCACTCAACCAACGAAA
** ** * * * *
13379298 AGGTTGGTCAGGAGAGGCAGAATGCTCAAGCCGGGGATCGACCCGGTCCCCCTTACGTGCTACGA
258 AGGCCGACCAGGAGAAGCAGAATGCTCAAGCCGAGGATCGACCCCGTCCCCCCTACGTGCTACGA
*
13379363 TCCTGCTACTGGTCCTACTACCGTAAACCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTTT
323 TCCTGCTACTGGTCCTACTACCGTAAACCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCT
*
13379428 GTATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGGAATGAGCGTGTGAACGC
388 GTATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGGAA-GAGCGTGCGAACGC
* * ** * * *
13379493 TCAACCGGCTGGAGAGGTAGAATGCACAAGCCGAGGACTGACCCGATCCCCTTTGCGTGCTGTCG
452 TCAACCGGCTGGAGAGGCAGAATGCACAAGCCGAGGACTAACCCGATCCCCCCTACGAGCTATCG
* * * * * *
13379558 ATCCTGCTGCCACAACCCTCAGTCCAATCTGATCTTAAACTGGGAATGAACTTCGTATGCCTAAG
517 ATACTGCTACCACAACACTCAGTCCAATCCGATCTTAAACTGGGAATGAACTCCATATGCCTAAG
**
13379623 TCAACCCACGAAACGAGCGTACGGGCACTAAACCGACCGGAGAGGCATAATACGTAAGCCAGGGA
582 TCAACCCACGAAACGAGCGTACGGGCACTAAACCGACCGGAGAGGCATAATACACAAGCCAGGGA
* * *** * *
13379688 TCAGCCCGGTCCCCCTCTGCGTGCTGCCAGTCCTGTTGCAACAACCCTCATTCTGGTTGG
647 TCAGCCCGATCCCCCTCTACGTGCTGCCAGTCCCACTGCAACAACCCTCATTCTAGCTGG
*
13379748 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCA
1 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
* * * *
13379813 GCTAGCCGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCTCAGTCCCCCCTGCATGCTGTCGATC
66 GCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTC-GTCCCCCCTGCGTGCTGTCGATC
* * *
13379878 CTGCTATCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTA
130 CTGCTA-CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * * *
13379943 AGGATGAAGTCCGTATGCCTAAGTCAACCTATGAAATGAACATGCGGGCGCTTAGCCAACTGAAA
194 GGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAACATGCGGGCACTCAACCAAC-GAAA
* ** * * * **
13380008 ATGCCGACCA-GAGAAGCAGAATG-TGCAAGTTGAGGATTGGCCCACTTCCCCCCTGTGTGCTAT
258 AGGCCGACCAGGAGAAGCAGAATGCT-CAAGCCGAGGATCGACCC-CGTCCCCCCTACGTGCTA-
* * * ** *
13380071 CGATCCTGCTGTTGGTCCTGCTGTTGGTCCTGCTACTGTAAACCTTGGTTCGGTCTGATCTTAGA
320 CGAT-C--C---T-G--CTAC---TGGTCCTACTACCGTAAACCTCAGTTCGGTCCGATCTTAGA
* ** * *
13380136 CTGGGAATGAACTCTGTCTGCTTAGACATGGAATGAACTTTGTATGCCTAAGCTAACCCAC-GAA
373 CTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGGAA
*** * * ** *
13380200 -A-CGTGCGGGTGCTCAGCCAG-TCGGAGAGGCAGAATGTGCAAGCCGGGGA-TCAACCCGATCC
438 GAGCGTGCGAACGCTCAACCGGCT-GGAGAGGCAGAATGCACAAGCCGAGGACT-AACCCGATCC
* * *
13380261 CCCCTACGAGCTATCGATATTGCTACCACAACACTC-GATCCAGTCCGATCTTAGACTGGGAATG
501 CCCCTACGAGCTATCGATACTGCTACCACAACACTCAG-TCCAATCCGATCTTAAACTGGGAATG
* * * * * ** **
13380325 AACTCCATATGTCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGTCGGTCGGAGAGGCAT
565 AACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTAAACCGACCGGAGAGGCAT
* * * * * * *
13380390 AATGCACAAGCCAGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGGTCCCACTGCCATAACCCT
630 AATACACAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCCAGTCCCACTGCAACAACCCT
*
13380455 CGGTTC-AGCTGG
695 C-ATTCTAGCTGG
* ** *
13380467 -GGTTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTC
1 TGCTT-AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTC
** * *
13380531 AGCCAGCCGGAGAGGCAGAATGCATAAGTTGGGGATCGGCTCGATCCCCCCTGTGTGCTGTCGAT
65 AGCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCG-TCCCCCCTGCGTGCTGTCGAT
** * *
13380596 CCTGCTACGGCAACCCTCGGT-TCGGTCCAATCTTAGACTGGGAATGAACTCCGTTTACTTAGAC
129 CCTGCTAC-GCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *** * * *
13380660 TGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTACAGGCACTC-AGC--C---
192 TGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAACATGCGGGCACTCAACCAACGAA
* * * * * * ** * *
13380719 --GCCCGA--A-GAG--GCATAATGCGCAAGCTGGGGATC-AGCCCGGTCCTCCTTTGCATGCTG
257 AAGGCCGACCAGGAGAAGCAGAATGCTCAAGCCGAGGATCGA-CCCCGTCC-CCCCTACGTGCT-
* * **** *
13380776 TCGATCC--C-GCT-G---T-C-A--GT---CCT--GTT--G-CC-A---TA-ACCCTCAAT--C
319 ACGATCCTGCTACTGGTCCTACTACCGTAAACCTCAGTTCGGTCCGATCTTAGACTGGGAATGAA
* ** * * * *
13380815 CGGCTG-GGGCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAACCCATGAAATGAGCGTGCG
384 C-TCTGTATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGGAA-GAGCGTGCG
** * * * ** * ** *
13380879 GGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCTGAGGACCGACCCGGTCCCTTCTACGTGC
447 AACGCTCAACCGGCTGGAGAGGCAGAATGCACAAGCCGAGGACTAACCCGATCCCCCCTACGAGC
* ** *** ** * * *
13380944 TGTCGAT-CTTGCTACTGCAACACTC-GATCTGGTCTAATCTTAGATTGGGAATGAACTCCGTAT
512 TATCGATAC-TGCTACCACAACACTCAG-TCCAATCCGATCTTAAACTGGGAATGAACTCCATAT
* * * * * * * ** ** *
13381007 GCCTAAGTCAACCCATGTAACGAGCGTTCTGGCGCTGAGCTAACCATA-AGGGCATAATGCACAA
575 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTAAACCGACCGGAGA-GGCATAATACACAA
* * * * * * ** *
13381071 GCCGGGGAT-TGACCCGATCCCCCTCTACGTTCTGTCGGTCCCACTGCCACAACCCTCGGTCCAG
639 GCCAGGGATCAG-CCCGATCCCCCTCTACGTGCTGCCAGTCCCACTGCAACAACCCTCATTCTAG
13381135 CTGG
703 CTGG
* * *
13381139 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCA
1 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
* * * * * *
13381204 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTACGTGCTG-CTGAT
66 GCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTC-GTCCCCCCTGCGTGCTGTC-GAT
* * ** * * * * *
13381268 CCTGCTGCCGCAACCCTCAGTCCAGTTTGATATTAGACTAGGAATTAACTCCATATGCTTAGACT
129 CCTGCT-ACGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
13381333 GGGGATGAACTCCATATGCCTAAGTCAACCCATGAAA
193 GGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAA
13381370 CGAGCGTGCG
Statistics
Matches: 1324, Mismatches: 252, Indels: 129
0.78 0.15 0.08
Matches are distributed among these distances:
668 38 0.03
669 5 0.00
670 5 0.00
671 9 0.01
672 403 0.30
673 5 0.00
674 1 0.00
675 1 0.00
676 1 0.00
678 3 0.00
680 3 0.00
683 2 0.00
685 1 0.00
686 1 0.00
687 1 0.00
690 1 0.00
691 1 0.00
694 2 0.00
695 1 0.00
703 1 0.00
705 4 0.00
706 32 0.02
708 5 0.00
709 240 0.18
710 27 0.02
711 4 0.00
712 1 0.00
714 1 0.00
716 1 0.00
717 1 0.00
718 11 0.01
719 411 0.31
720 7 0.01
722 3 0.00
723 91 0.07
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (706 bp):
TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
GCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGTCCCCCCTGCGTGCTGTCGATCC
TGCTACGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
GATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAACATGCGGGCACTCAACCAACGAAAAGG
CCGACCAGGAGAAGCAGAATGCTCAAGCCGAGGATCGACCCCGTCCCCCCTACGTGCTACGATCC
TGCTACTGGTCCTACTACCGTAAACCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTA
TGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGGAAGAGCGTGCGAACGCTCAA
CCGGCTGGAGAGGCAGAATGCACAAGCCGAGGACTAACCCGATCCCCCCTACGAGCTATCGATAC
TGCTACCACAACACTCAGTCCAATCCGATCTTAAACTGGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAACGAGCGTACGGGCACTAAACCGACCGGAGAGGCATAATACACAAGCCAGGGATCAG
CCCGATCCCCCTCTACGTGCTGCCAGTCCCACTGCAACAACCCTCATTCTAGCTGG
Found at i:13381329 original size:26 final size:26
Alignment explanation
Indices: 13381300--13381351 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13381290 CAGTTTGATA
*
13381300 TTAGACTAGGAATTAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
* *
13381326 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
13381352 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:13382251 original size:26 final size:26
Alignment explanation
Indices: 13382215--13382267 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13382205 TCGGTCTATT
13382215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13382241 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13382267 C
1 C
13382268 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13388547 original size:26 final size:26
Alignment explanation
Indices: 13388511--13388563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13388501 CCGATTTGAT
*
13388511 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13388537 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13388563 C
1 C
13388564 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13389050 original size:159 final size:158
Alignment explanation
Indices: 13388536--13389356 Score: 745
Period size: 159 Copynumber: 5.2 Consensus size: 158
13388526 AACTTCGTAT
* * * ** *
13388536 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * *** * * * *
13388600 ACCGGCTGGAGAGGCATAATGCGTAAGTTGGGGATCGACCCGGTCCCCCTCTGTGTGTTGCCAAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGAT
*
13388665 CCTGCTGCCACAACCCTCGATCCGACTGGG
129 CCCGCTGCCACAACCCTCGATCCGACTGGG
* * * * *
13388695 GCATCGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * ** * * * *
13388760 CCGATCGGAGAGGCAGAACGCATAAGCTAGGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * * * * * *
13388825 TGCTGTCGCAACCCTCGATCTG-GTCCGA
131 CGCTGCCACAACCCTCGATCCGACT-GGG
* * * * *
13388853 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCCTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
*** ** * * * *
13388917 ATGGGCCAAAGAGGCATAATGCGCAAACCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGAT
* * * *
13388982 CCCGCTGCCACAACCCTTGGTCCGGCTAGG
129 CCCGCTGCCACAACCCTCGATCCGACTGGG
* * *
13389012 GCTTAGACATGGAATGATCTACC-TATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * * *
13389076 GCCAGCCAGAGAGGTAGAATACGCAAGCCGGGGATCGGCCCGATCCCTCCTGCGTGTTGCAGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
* *
13389141 CCGCTGCCACAACCCTTGGTCCGACTGGG
130 CCGCTGCCACAACCCTCGATCCGACTGGG
* * * * *
13389170 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCATGAAATGGGCGTGTAGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG-CGGGCGCTCA
* * *
13389235 GCCGGCCGGAGAGGCAGAATGCGCAAGCCTGGGATCGGCCCAGTCCCCCCTGCGTTCTGCCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
** * * * *
13389300 CTACTACCGCAACCCTCGATCCGA-TCCGA
130 CCGCTGCCACAACCCTCGATCCGACT-GGG
*
13389329 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
13389357 TTAGATTGGA
Statistics
Matches: 530, Mismatches: 121, Indels: 22
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.01
158 206 0.39
159 315 0.59
160 5 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
CGCTGCCACAACCCTCGATCCGACTGGG
Found at i:13389112 original size:317 final size:316
Alignment explanation
Indices: 13388537--13389323 Score: 744
Period size: 317 Copynumber: 2.5 Consensus size: 316
13388527 ACTTCGTATG
* * * ** *
13388537 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCATTGAAC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCCTGCGGGCACTGAAC
*** * **** * *
13388602 CGGCTGGAGAGGCATAATGCGTAAGTTGGGGATCGACCCGGTCCCCCTCTGTGTGTTGCCAATCC
66 CGGCCAAAGAGGCATAATGCGCAAACCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAATCC
* * *
13388667 TGCTGCCACAACCCTCGATCCGACTGGGGCATCGACATGGAATGAACTCCGTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGATCCGACTAGGGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
13388732 CCTACGAAACGAGCGTGCGGGCGTTCAGCCGATCGGAGAGGCAGAACGCATAAGCTAGGGATCGG
196 CCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAACGCA-AAGCCAGGGATCGG
13388797 CCCAGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGAT
260 CCCAGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGAT
* *
13388854 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCCTGCGGGCGCTGAAT
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCCTGCGGGCACTGAAC
* **
13388919 GGGCCAAAGAGGCATAATGCGCAAACCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CGGCCAAAGAGGCATAATGCGCAAACCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAATCC
* * * * *
13388984 CGCTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGATCTACC-TATGCCTAAGCCA
131 CGCTGCCACAACCCTCGATCCGACTAGGGCATAGACATGGAATGAACT-CCGTATGCCTAAGCCA
* * * *
13389048 ACCCACGAAATGAGCATGCGGGTGCTCAGCC-AGCCAGAGAGGTAGAATACGC-AAGCCGGGGAT
195 ACCCACGAAACGAGCATGCGGGCGCTCAGCCGA-CCAGAGAGGCAG-A-ACGCAAAGCCAGGGAT
* * * * * * * * * * * **
13389111 CGGCCC-GATCCCTCCTGCGTGTTG-CAGATCCCGCTGCCACAACCCTTGGTC-CGACTGGGG
257 CGGCCCAG-TCCCCCCTACGTGCTGTC-GATCCTGCTGTCGCAACCCTCGATCTGGTC-CGAT
* * * * * * * * * *
13389171 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACGCATGAAATGGGCGTGTAGGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCCTG-CGGGCACTGA
* ** * * * * * * *
13389235 GCCGGCCGGAGAGGCAGAATGCGCAAGCCTGGGATCGGCCCAGTCCCCC-CTGCGTTCTGCCGAT
64 ACCGGCCAAAGAGGCATAATGCGCAAACCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAAT
** * *
13389299 CCTACTACCGCAACCCTCGATCCGA
129 CCCGCTGCCACAACCCTCGATCCGA
13389324 TCCGATCTTA
Statistics
Matches: 381, Mismatches: 80, Indels: 18
0.80 0.17 0.04
Matches are distributed among these distances:
316 6 0.02
317 321 0.84
318 50 0.13
319 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (316 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCCTGCGGGCACTGAAC
CGGCCAAAGAGGCATAATGCGCAAACCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAATCC
CGCTGCCACAACCCTCGATCCGACTAGGGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAACGCAAAGCCAGGGATCGGC
CCAGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGAT
Found at i:13389739 original size:26 final size:26
Alignment explanation
Indices: 13389710--13389762 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13389700 CCAGTCTGAT
13389710 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
13389736 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
13389762 C
1 C
13389763 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:13390262 original size:26 final size:26
Alignment explanation
Indices: 13390211--13390263 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13390201 TCGGTCTGAT
*
13390211 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
13390237 CTTAGACTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
13390263 C
1 C
13390264 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:13397080 original size:104 final size:106
Alignment explanation
Indices: 13396902--13397098 Score: 227
Period size: 104 Copynumber: 1.9 Consensus size: 106
13396892 CCTAAGACAA
* * * ** *
13396902 CCAACGAAACGAACGTGCGGGCGCTCAGTCGGTCGAAAAGGTAGAATGCGCAAGTTAAGGATCGG
1 CCAACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGGCAAGGATCGA
13396967 CCCAATCCCC-CCTATGTGCTATCGATCTAGCTGCCGCAAC
66 CCCAATCCCCTCCTATGTGCTATCGATCTAGCTGCCGCAAC
* * * * * *
13397007 CCAA-GAAACGAGCGTGCGGGCGCTGAGCCGGCCTAAGAGGCATAATGCGCAAGGCAGGGATCGA
1 CCAACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGGCAAGGATCGA
** * * *
13397071 CCCGGTCCCCTTCTGTGTGCTGTCGATC
66 CCCAATCCCCTCCTATGTGCTATCGATC
13397099 CCATGCCACA
Statistics
Matches: 74, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
104 56 0.76
105 18 0.24
ACGTcount: A:0.24, C:0.29, G:0.30, T:0.17
Consensus pattern (106 bp):
CCAACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGGCAAGGATCGA
CCCAATCCCCTCCTATGTGCTATCGATCTAGCTGCCGCAAC
Found at i:13397940 original size:158 final size:157
Alignment explanation
Indices: 13397645--13398177 Score: 619
Period size: 158 Copynumber: 3.4 Consensus size: 157
13397635 CTGTTACCAC
* * *
13397645 TCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
13397710 TAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGAT
66 -AACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGAT
* *
13397775 TGGCCCGATCCCCCCTGCGTGCTATCGA
130 CGACCCGATCCCCCCTGCGTGCTATCGA
13397803 TCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-
* * * * * * *
13397868 CAACCCATGAAGCGAGCGTGTGGGCGCTGAGCCAGTCGGAGTGGCATAATACGCAAGCCAGGGAT
65 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGAT
* *
13397933 CCACCCGATCCCCCTCTGCGTGCTATCGG
130 CGACCCGATCCCCC-CTGCGTGCTATCGA
* * ** ** *
13397962 TCCCGCTGCCACAACCCTC-AGTTTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTA
1 TCCTGCTACCACAACCCTCGA-TCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
* * * *
13398024 AGCCAACCCACAAAAC-AGGCGTGCGGACGCTCAGCCA-CCGGAGAGGCAGAATGCGCAAGCCGG
63 AG-CAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCAG
* *
13398087 GGATCGACCC-ATTCCCCCCTACGTGCTGTCGA
126 GGATCGACCCGA-TCCCCCCTGCGTGCTATCGA
** * * * ** *
13398119 TCCTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGC
1 TCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
13398178 TTAGATGGCA
Statistics
Matches: 315, Mismatches: 50, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.00
157 54 0.17
158 169 0.54
159 90 0.29
160 1 0.00
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (157 bp):
TCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATC
GACCCGATCCCCCCTGCGTGCTATCGA
Found at i:13398912 original size:26 final size:26
Alignment explanation
Indices: 13398874--13398926 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13398864 GGCTCAAAAT
13398874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13398900 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13398926 C
1 C
13398927 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13399522 original size:26 final size:26
Alignment explanation
Indices: 13399472--13399524 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13399462 CCGATTCGAT
**
13399472 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
13399498 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13399524 C
1 C
13399525 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13401553 original size:155 final size:157
Alignment explanation
Indices: 13401171--13401553 Score: 364
Period size: 157 Copynumber: 2.4 Consensus size: 157
13401161 GATCTGCCCT
* * * *
13401171 ACGTGCTATCAATCCTGCTG-TCGTAACTCTCAGTTTGATCTGATCTTACACTGGGAATGAACTC
1 ACGTGCTATCGATCCTGCTGCT-GTAACCCTCAGTCTG-TCTGATCTTAGACTGGGAATGAACTC
* * *
13401235 CGTATGCAAAAGTAAACCCACGAAATGAGCGTGCGGGCGCTGAGCTGACCGAAGAGGCATAATGC
64 CGTATGCAAAAGTAAACCCACGAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCAGAATGC
* * *
13401300 ACAAGCCAGGGATCGGCCCAGTCCCCTCT
129 ACAAGACAGGGATCAGCCCAGTCCCCTCA
* * * * *** * ** *
13401329 GCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCTGGCTGGGCTTTGACAT-GGAATGAACTCC
1 ACGTGCTATCGATCCTGCTGCTGTAACCCTCAGTCTGTCTGATCTTAGAC-TGGGAATGAACTCC
* ** * * * *
13401393 CTATGCCTAA-TCCAACCCACGAAATG-GACGTGCGGGCACTTAGCCGATCGGAGAGGCAGAATG
65 GTATGCAAAAGT-AAACCCACGAAATGAG-CGTGCGGGCACTGAGCCGACCGAAGAGGCAGAATG
** * *
13401456 TGCAA-AC-GGGATCAGCCCGGTCCCTTCA
128 CACAAGACAGGGATCAGCCCAGTCCCCTCA
* * *
13401484 ACGTGCTATCGATCCTACTGCTGTAACCCTCAATCTGTCTGATCTTAGACTGGGAATGAACTTCG
1 ACGTGCTATCGATCCTGCTGCTGTAACCCTCAGTCTGTCTGATCTTAGACTGGGAATGAACTCCG
13401549 TATGC
66 TATGC
13401554 TTAGACTGGG
Statistics
Matches: 173, Mismatches: 47, Indels: 13
0.74 0.20 0.06
Matches are distributed among these distances:
154 1 0.01
155 70 0.40
156 3 0.02
157 72 0.42
158 27 0.16
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (157 bp):
ACGTGCTATCGATCCTGCTGCTGTAACCCTCAGTCTGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCAAAAGTAAACCCACGAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCAGAATGCAC
AAGACAGGGATCAGCCCAGTCCCCTCA
Found at i:13401578 original size:26 final size:26
Alignment explanation
Indices: 13401527--13401579 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13401517 TCTGTCTGAT
* *
13401527 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13401553 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13401579 C
1 C
13401580 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13402133 original size:159 final size:157
Alignment explanation
Indices: 13401704--13402146 Score: 479
Period size: 159 Copynumber: 2.8 Consensus size: 157
13401694 CCGCTGCCAG
* **
13401704 TCCTGCTACCACAACCCTCAGTCTGG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTACCACAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAG
* * * * **
13401768 CCAACCCACGAAACGAGTGTGCAGGCGCTCAGTCAGCCGGAGAGGTAGAATGCACAAG-TTGGGA
64 TCAACCCACGAAACGAGCGTGC-GGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * **
13401832 -CCGCCCAGGTCCCTTCTGCGTGCTGTCGA
128 TCAGCCCAGATCCCCCCTGCGTGCTGTCGA
* * * ** *
13401861 TCTTGCTACCGCAACCCTCGGTCTAGTCCAATCTT--A-TGGAATGAACTTCGTATGCCTAAGTC
1 TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
13401923 AACCCATGAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAAGCATAATGCGCAAGCCGGGGATC
66 AACCCACGAAACGAGCGTGC-GGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
13401988 AGCCC-GATCCCCCCATGCGTGCTGTCGA
130 AGCCCAGATCCCCCC-TGCGTGCTGTCGA
* *
13402016 TCCTGCTACCACAACACTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGT
* * *
13402081 GAACCCACGAAACGAGCATGCGGACGCTCAGTC-GACCAGAGAGGCAGAATGCGCAAGCCGGGGA
65 CAACCCACGAAACGAGCGTGCGG-CGCTCAGTCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGA
13402145 TC
128 TC
13402147 GAACGGGTGG
Statistics
Matches: 231, Mismatches: 45, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
153 69 0.30
154 10 0.04
155 47 0.20
157 26 0.11
158 5 0.02
159 74 0.32
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCA
GCCCAGATCCCCCCTGCGTGCTGTCGA
Found at i:13403273 original size:160 final size:159
Alignment explanation
Indices: 13402852--13403275 Score: 446
Period size: 160 Copynumber: 2.7 Consensus size: 159
13402842 AGCAGGTCAT
* * * * *
13402852 AGAGGCAGAATGTGCAAGCC-GGGATTGGCCGGTCCCCCCTGCATGCTGTCAATCCTGCTGCCAC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
** * * * ** **
13402916 AACCCTCGGTCTGGTCCAATCTTAAACTGGGAATGAACTT-TGTATGCATAAGTTAACCCACGAA
66 AACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTTCCCTATGCATAAGCCAACCCACGAA
* **
13402980 ACGAGCGTGCGGGCGCTTAAGCCAGTCGA
131 ACAAGCGTGCGGGCGCTTAAGCCAACCGA
* * * * *
13403009 AGAGGCATAAT-CGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCTGCTGCC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCC
* * * ** * *
13403073 ACAACCCTCAGTCCAGCTAGGGCGTAGACAT-GGAATGAACTTCCCTATTGCCTTAAGCCAACCC
64 ACAACCCTCGGTCCAGTTCGATCTTAGAC-TGGGAATGAACTTCCCTA-TG-CATAAGCCAACCC
* *
13403137 ACGAAACAAGCGTGCGGGCGC-TCAGCCAACCGG
126 ACGAAACAAGCGTGCGGGCGCTTAAGCCAACCGA
* *
13403170 AGAGGCAGAATGCG-AAACCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCA
*
13403234 CAACCGTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTTC
65 CAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTTC
13403276 GTATGCTTAG
Statistics
Matches: 212, Mismatches: 45, Indels: 17
0.77 0.16 0.06
Matches are distributed among these distances:
156 6 0.03
157 17 0.08
158 9 0.04
159 49 0.23
160 58 0.27
161 41 0.19
162 32 0.15
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
AGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTTCCCTATGCATAAGCCAACCCACGAA
ACAAGCGTGCGGGCGCTTAAGCCAACCGA
Found at i:13403284 original size:26 final size:26
Alignment explanation
Indices: 13403255--13403307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13403245 CCAGTTCGAT
*
13403255 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13403281 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13403307 C
1 C
13403308 CTAAAGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13404533 original size:26 final size:26
Alignment explanation
Indices: 13404504--13404556 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13404494 CTGGTCGGAT
*
13404504 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
13404530 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
13404556 C
1 C
13404557 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:13405038 original size:26 final size:26
Alignment explanation
Indices: 13405009--13405061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13404999 TCCGTCTGAT
*
13405009 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13405035 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13405061 C
1 C
13405062 CTAAGTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13406550 original size:355 final size:356
Alignment explanation
Indices: 13406031--13406750 Score: 819
Period size: 355 Copynumber: 2.0 Consensus size: 356
13406021 ACCTCTGAGT
* * * *
13406031 GCTACCGGTCCCACTACCAAAACCCTCAGTTTGGCTGGGCATAGACATGGAATGAATTCCCTATG
1 GCTACCGGTCCCACTACCAAAACCCTCAGTCTGGCTGGGCATAAACAGGGAATGAACTCCCTATG
* * * **
13406096 CCTAAGCCAACCCACGAAACGGGCGTGCAAGCACTCAGTCGGCCGGAGAGGCAGAATGCACAAGT
66 CCTAAGCCAACCCACAAAACGAGCGTCCAAGCACTCAGTCGGCCAAAGAGGCAGAATGCACAAGT
* * * * *
13406161 CAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCG-A-TCCTGCTGCCGTAACCCTCGGTCTGGTC
131 CAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGCAGTCCTGCTGCCGCAACCCTCGAT-TCGTC
* * * *
13406224 TGATCTTAGATTGGGAATGAACTCTATATGCTTAGACCA-GGGATGAACTCCGTATGCCTAAGTC
195 TGATCTTAGACTGGGAATGAACTCTATATGCTTAGA-CATGGAACGAACTCCGTATGCCTAAGCC
* *
13406288 AACCAACGAAATGAGCGTGCGGGCACTCA-CTCGACCGAAGAGGCATAA-TGCGA-AAGCCGGGG
259 AACCAACGAAATGAGCGTGCGGGCACTCAGC-CGACCGAAGAGGCAGAATTGC-ATAAGCCGAGG
* * *
13406350 ATTAGCCCGA-TCCCCCTCTGCGTGCTGTCGATCCC
322 ATCAGCCCCAGTCCCCC-CTGCGTGCTATCGATCCC
** * * *
13406385 GCTACCGGTCCTGCTACCACAACCCTC-GATCTGGCTGGGGCTTAAACAGGGAATGAACTCCGTA
1 GCTACCGGTCCCACTACCAAAACCCTCAG-TCTGGCT-GGGCATAAACAGGGAATGAACTCCCTA
* * ** ** **
13406449 TGCCTAAGTCAACCCATAAAACGAGCGTCCGGGTGCTCAGTCGGCCAAAGAGGCAGAATGGGCAA
64 TGCCTAAGCCAACCCACAAAACGAGCGTCCAAGCACTCAGTCGGCCAAAGAGGCAGAATGCACAA
13406514 G-CAGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGTTGGTCCTGCTGCCGCAAC
129 GTCA-GGGATCAGCCCGGTCCCCCCTACGTGCTGTCG---C-A------GTCCTGCTGCCGCAAC
* *
13406578 CCTCGATTCGTTTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGTAACGAACTCCGT
183 CCTCGATTCGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAACGAACTCCGT
* * * * *
13406643 ATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATTGCAT
248 ATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATTGCAT
*
13406708 AAGCCGAGGATCAGCCCCAGTCCCCCCTGTGTGCTATCGATCC
313 AAGCCGAGGATCAGCCCCAGTCCCCCCTGCGTGCTATCGATCC
13406751 TGTTGCCGCA
Statistics
Matches: 302, Mismatches: 44, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
353 1 0.00
354 32 0.11
355 105 0.35
360 1 0.00
365 2 0.01
366 100 0.33
367 55 0.18
368 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (356 bp):
GCTACCGGTCCCACTACCAAAACCCTCAGTCTGGCTGGGCATAAACAGGGAATGAACTCCCTATG
CCTAAGCCAACCCACAAAACGAGCGTCCAAGCACTCAGTCGGCCAAAGAGGCAGAATGCACAAGT
CAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGCAGTCCTGCTGCCGCAACCCTCGATTCGTCT
GATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAA
CCAACGAAATGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATTGCATAAGCCGAGGATCA
GCCCCAGTCCCCCCTGCGTGCTATCGATCCC
Found at i:13406584 original size:170 final size:170
Alignment explanation
Indices: 13406261--13406584 Score: 416
Period size: 171 Copynumber: 1.9 Consensus size: 170
13406251 ATGCTTAGAC
* * * *
13406261 CAGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCACTCACTCGACCGA
1 CAGGGATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTCCGGGCACTCACTCGACCAA
* * * * *
13406326 AGAGGCATAATGCGAAAGCCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACC
66 AGAGGCAGAATGCGAAAGCAGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCACTACC
13406391 GGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAAA
131 GGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAAA
* * ** * *
13406431 CAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTCCGGGTGCTCAGTCGGCCA
1 CAGGG-ATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTCCGGGCACTCACTCGACCA
* * * * **
13406496 AAGAGGCAGAATGGGCAAGCAGGGGATCAGCCCGGTCCCCC-CTACGTGCTGTCGATCCTACTGT
65 AAGAGGCAGAATGCGAAAGCAGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCACTAC
* * *
13406560 TGGTCCTGCTGCCGCAACCCTCGAT
130 CGGTCCTGCTACCACAACCCTCGAT
13406585 TCGTTTGATC
Statistics
Matches: 129, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
170 45 0.35
171 84 0.65
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (170 bp):
CAGGGATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTCCGGGCACTCACTCGACCAA
AGAGGCAGAATGCGAAAGCAGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCACTACC
GGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAAA
Found at i:13407328 original size:26 final size:26
Alignment explanation
Indices: 13407290--13407342 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13407280 CTGGTTTGAT
*
13407290 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
13407316 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
13407342 C
1 C
13407343 CTAAGCCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:13407801 original size:26 final size:26
Alignment explanation
Indices: 13407772--13407824 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13407762 CCGGTCCAAT
13407772 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
13407798 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
13407824 C
1 C
13407825 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13407839 original size:678 final size:686
Alignment explanation
Indices: 13406424--13407896 Score: 1688
Period size: 678 Copynumber: 2.1 Consensus size: 686
13406414 TCTGGCTGGG
* * * *
13406424 GCTTAAAC-AGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTCCGGGTGCTCA
1 GCTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCA
* * * * * * * *
13406488 GTCGGCCAAAGAGGCAGAATGGGCAAGCAGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATC
65 GCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGCCGATC
** *
13406553 CTACTGTTGGTCCTGCTGCCGCAACCCTCGATTCGTTTGATCTTAGACTGGGAATGAACTCTATA
130 CTACTACTGGTCCTACTGCCGCAACCCTCGATTCGTTTGATCTTAGACTGGGAATGAACTCTATA
* ** **
13406618 TGCTTAGACATGTAACGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCA
195 TGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCA
* * * **
13406683 GCCGACCGGAGAGGCAGAATTGCATAAGCCGAGGATCAGCCCCAGTCCCCCCTGTGTGCTATCGA
260 GCCGACCGGAGAGGCAGAATTGCACAAGCCGAGGATCAGACCCAATCCCCCCTACGTGCTATCGA
* *
13406748 TCCTGTTGCCGCAACCGTCGATCCGATCCTATCTTAGACTGGAATGAACTCCGTATGGCATAAGT
325 TCCTGCTGCCGCAACCCTCGATCCGATCCTATCTTAGACTGGAATGAACTCCGTATGGCATAAGT
* * *
13406813 CAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGATCGGAGAGGCATAAGCGCAAGCCGAGGATC
390 CAACCCACGAAACGAGCGTACGGGCGCTGAGCCGACCGGAGAGGCATAAGCGCAAGCCGAGGA--
*
13406878 GGTCGGTCCCCCTCTGCATGCTACCGGTCTCGCTTGCCCAACCATCGGTCCAACTGGGGTTAGAT
453 GATCGG----CCTCTGCATGC-ACC-G-CTCGCTTGCCCAACCATCGGTCCAACTGGGGTTAGAT
* * ** * * *
13406943 ATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGGGGGTACAGACGCTCAGCCGGCCGG
511 ATGGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGCCGCCCGG
* * * * * * *
13407008 AGAGGCAGAATACGCAAGCTAGGGATCGACCCGGTTCCCACTGCGTGCTGTCGATCCTGCTACCG
576 AAAGGCAAAATACGCAAGCTAGGGATCGACCCGGTCCCCACTGCATGCTGCCGAACCTACTACCG
** ** * * *
13407073 CAACCCTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTTCGTAT
641 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGCAT
* * *
13407119 GCTTAGACTAGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAG
* * * * *
13407184 CCGGTCGGAGAGGCAGAATGCGTAATCCGGGGATCAGCCCAGTCCCCCCTGCATGCTGCCGATCT
66 CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGCCGATCC
* * * * *
13407249 TGCTACTGGTCCTACTGCCGTAACCCTC-AGTCTGGTTTGATCTTAGACTGGGAATGAAAT-TCG
131 TACTACTGGTCCTACTGCCGCAACCCTCGA-T-TCGTTTGATCTTAGACTGGGAATGAACTCT-A
* * *
13407312 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCCACCCATGAAACAAGCGTACGGGTGCT
193 TATGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCT
* ** * * *
13407377 CAGCCGACCGGAGAGGCAGAA-TGCGCAAGGTGGGGA-CCGACCCAATCATCCCCTACGTGCTAT
258 CAGCCGACCGGAGAGGCAGAATTGCACAAGCCGAGGATCAGACCCAATC-CCCCCTACGTGCTAT
* * * * * *
13407440 CGGTCCTGCTGTCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTAT-GCC
322 CGATCCTGCTGCCGCAACCCTCGATCCGATCCT-ATCTTAGACT-GGAATGAACTCCGTATGGCA
* * * * * *
13407503 TAAGTCAACCCATG-AATGGGTGTACGGGCGCTGAGCCGGCCGGAGAGGCATAATGCGTAAGCC-
385 TAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGACCGGAGAGGCATAA-GCGCAAGCCG
* * *
13407566 AGG-GATCGG-C-CTG-AT-C-CC-C-CG-TTGCCACAACCCTCGGTCCAGCTAGGGTTTAGATA
449 AGGAGATCGGCCTCTGCATGCACCGCTCGCTTGCC-CAACCATCGGTCCAACT-GGGGTTAGATA
* * ** *
13407622 TGGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGTCGCCCGGA
512 TGGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGCCGCCCGGA
* * * * * *
13407687 AAGGCAAAATGCGTAAGCTGGGGATC-AGCCCGGTCCCCCCTGCATGCTGCCGAACCTACTGCTG
577 AAGGCAAAATACGCAAGCTAGGGATCGA-CCCGGTCCCCACTGCATGCTGCCGAACCTACTACCG
13407751 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGCAT
641 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGCAT
* * *
13407797 GCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCGG
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAG
* *
13407862 CCGACCAGAGAGGCAGGATGCGTAAGCCGGGGATC
66 CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATC
13407897 GAACAGGTGG
Statistics
Matches: 656, Mismatches: 111, Indels: 39
0.81 0.14 0.05
Matches are distributed among these distances:
676 5 0.01
677 18 0.03
678 241 0.37
681 2 0.00
683 1 0.00
684 2 0.00
685 3 0.00
686 1 0.00
691 5 0.01
694 46 0.07
695 208 0.32
696 124 0.19
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (686 bp):
GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAG
CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGCCGATCC
TACTACTGGTCCTACTGCCGCAACCCTCGATTCGTTTGATCTTAGACTGGGAATGAACTCTATAT
GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATTGCACAAGCCGAGGATCAGACCCAATCCCCCCTACGTGCTATCGAT
CCTGCTGCCGCAACCCTCGATCCGATCCTATCTTAGACTGGAATGAACTCCGTATGGCATAAGTC
AACCCACGAAACGAGCGTACGGGCGCTGAGCCGACCGGAGAGGCATAAGCGCAAGCCGAGGAGAT
CGGCCTCTGCATGCACCGCTCGCTTGCCCAACCATCGGTCCAACTGGGGTTAGATATGGAATGAA
CACCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGCCGCCCGGAAAGGCAAAA
TACGCAAGCTAGGGATCGACCCGGTCCCCACTGCATGCTGCCGAACCTACTACCGCAACCCTCAG
TCCGGTCCAATCTTAGACTGGGAATGAACTCCGCAT
Found at i:13408495 original size:26 final size:26
Alignment explanation
Indices: 13408455--13408507 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13408445 GGCTCAAACT
13408455 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13408481 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
13408507 C
1 C
13408508 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13410221 original size:26 final size:26
Alignment explanation
Indices: 13410192--13410244 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13410182 CCGGTCCCAT
* *
13410192 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
13410218 CTTAGGCTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
13410244 C
1 C
13410245 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:13410611 original size:26 final size:26
Alignment explanation
Indices: 13410574--13410623 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13410564 CGGTTCGATC
13410574 TTAGACTGGGAATGAACTCTGTATCT
1 TTAGACTGGGAATGAACTCTGTATCT
13410600 TTAGACAT-GGAATGAACTCTGTAT
1 TTAGAC-TGGGAATGAACTCTGTAT
13410624 GGCTAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATCT
Found at i:13415141 original size:26 final size:26
Alignment explanation
Indices: 13415090--13415142 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13415080 GGCTCAAAAT
*
13415090 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13415116 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13415142 C
1 C
13415143 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13416128 original size:159 final size:156
Alignment explanation
Indices: 13415735--13416236 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 156
13415725 GTCGATCTCA
* * * * * *
13415735 CTGCCGGTCTTGCTGCCACAACCCTCGGT-TCGGCTGGGGCTTAGACATGGAATGATCTTCGTAT
1 CTGCCGATCCTGCTACCACAACCCTCGGTCT-GGC-GGGGCTTAGA-ATGGAATGAACTCCATAT
* * *
13415799 GCCTAAGCCAACCCACGAAACTGGCATGCGGGCACTCAGCC-AGTCGGAGAGGC-AGAATGCGTA
63 GCCTAAGCCAACCCATGAAACTGGCGTGCGGGCACTCAGCCGA-CCGGAGAGGCTAGAATGCG-A
* *
13415862 AGCCGGGGACCGACCTGGTCCCCCCTGTGTG
126 AGCCGGGGATCGACCTGGTCCCCCCTGCGTG
* * * * * * ** *
13415893 CTGTCGATCCTGCTGCTACAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATG
1 CTGCCGATCCTGCTACCACAACCCTCGGTCTG-GCGGGGCTTAGAAT-GGAATGAACTCCATATG
** * * * *
13415958 CCTAAATCAACCCATGAAA-TGAGCGTACGGGCACTGAGCCGACCGGAGAGGCATAAAATAC-AA
64 CCTAAGCCAACCCATGAAACTG-GCGTGCGGGCACTCAGCCGACCGGAGAGGC-TAGAATGCGAA
* ** *
13416021 GCCGGGGATCGGCCCAGTCCCCCTCTGCGTC
127 GCCGGGGATCGACCTGGTCCCCC-CTGCGTG
*
13416052 CTGCCGATCCTGCTACCACAACCCTCGGTCTGGCGGGGGCTTAGAGATGGAATGAACTCCCTATG
1 CTGCCGATCCTGCTACCACAACCCTCGGTCTGGC-GGGGCTTAGA-ATGGAATGAACTCCATATG
* * *
13416117 CCTTAGCCAACCCATGAAACTGGCGTGCGGGCACTCAGCCGGCCGGAGAGG-TAGAATGCGTAAA
64 CCTAAGCCAACCCATGAAACTGGCGTGCGGGCACTCAGCCGACCGGAGAGGCTAGAATGCG-AAG
*
13416181 TCGGGGATCGACCTGGTCCCCCCTGCGTG
128 CCGGGGATCGACCTGGTCCCCCCTGCGTG
*
13416210 CTGCCGATCCTACTACCACAACCCTCG
1 CTGCCGATCCTGCTACCACAACCCTCG
13416237 ATCCAGTCCG
Statistics
Matches: 278, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 9 0.03
158 140 0.50
159 121 0.44
160 8 0.03
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTGCCGATCCTGCTACCACAACCCTCGGTCTGGCGGGGCTTAGAATGGAATGAACTCCATATGCC
TAAGCCAACCCATGAAACTGGCGTGCGGGCACTCAGCCGACCGGAGAGGCTAGAATGCGAAGCCG
GGGATCGACCTGGTCCCCCCTGCGTG
Found at i:13417359 original size:27 final size:25
Alignment explanation
Indices: 13417311--13417363 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
13417301 CCGATCTGAT
13417311 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCA-ATG
* *
13417337 CTTAGACTGGGGATGAATTTCCAATG
1 CTTAGACTGGGAATGAA-CTCCAATG
13417363 C
1 C
13417364 CACCGGTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCAATG
Found at i:13417506 original size:26 final size:26
Alignment explanation
Indices: 13417468--13417546 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
13417458 GGCTCAAACT
*
13417468 CTTAGAC-TGGGAATGAACTCCGTCTG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
13417494 CTTAGACATGGAATGAATTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* *
13417520 GTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13417546 C
1 C
13417547 CTAAGCCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 45 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13417848 original size:157 final size:152
Alignment explanation
Indices: 13417530--13418153 Score: 593
Period size: 157 Copynumber: 4.1 Consensus size: 152
13417520 GTTAGACATT
* * ** *
13417530 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGTGCTCAGCCG-GCTAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGGCTCAGCCGTG--A-AGA
* * * *
13417594 GGCAAAATGCGCAAGCCGAGATC-AGCCCGATCCCCCCCTGCGTGCTGCCGATCCTGCT-ACTGC
63 GGCAGAATGCGCAAGCCGGGATCGA-CCCGGT-CCCCCCTGCGTGCTGTCGATCCTGCTGA-TGC
* *
13417657 AACCCTTGGTCTGGTCCGATCTTAGACTGG
125 AACCCTCGGTCT-G-CTGATCTTAGACTGG
*
13417687 GAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGGCTCAGTCGATCGAAGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGGCTCAGCCG-T-GAAGAG
* * * *
13417751 GCAGAATGCGTAAGCCAGGGATCGACCCGGTCCTCCCCTGCGTGCTGTTGATTCTGTTGATGCAA
64 GCAGAATGCGCAAGCC-GGGATCGACCCGGTCC-CCCCTGCGTGCTGTCGATCCTGCTGATGCAA
* *
13417816 CCCTCAGTCTGATCTGATCTTAGACTGA
127 CCCTCGGTCTG--CTGATCTTAGACTGG
* *
13417844 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC--GTGGGGCTGAGCCG-GAAGAGGC
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGGCTCAGCCGTGAAGAGGC
* * * * * ***
13417906 ATAATGCGCAAG--GGGATCGGCCC-GTCCCCTCTGTGTGC--TCG-TCCCGCTGCCACAACCCT
66 AGAATGCGCAAGCCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGATGCAACCCT
**
13417965 CGGTC-GCTGGGGCTTAGACAT-G
131 CGGTCTGCT-GATCTTAGAC-TGG
* * * * *
13417987 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTG-CGGGCTCAGCCGATGGAGAGG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGGCTCAGCCG-TGAAGAGG
* * * *
13418051 CAGAATGTGCAAGCCGGGATTGGCCCGGT-CCCCCTGCGTGCTGTCGATCCTGTTG-TCGCAACC
65 CAGAATGCGCAAGCCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGAT-GCAACC
*
13418114 CTCGGTCTGGTGATCTTAGACTGG
129 CTCGGTCTGCTGATCTTAGACTGG
13418138 GAATGAACT-CGTATGC
1 GAATGAACTCCGTATGC
13418154 TTAGACTGGG
Statistics
Matches: 386, Mismatches: 57, Indels: 55
0.78 0.11 0.11
Matches are distributed among these distances:
142 2 0.01
143 44 0.11
144 12 0.03
145 17 0.04
146 19 0.05
148 29 0.08
149 6 0.02
150 20 0.05
151 36 0.09
152 2 0.01
153 18 0.05
156 73 0.19
157 76 0.20
158 31 0.08
159 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (152 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGGCTCAGCCGTGAAGAGGC
AGAATGCGCAAGCCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGATGCAACCCT
CGGTCTGCTGATCTTAGACTGG
Found at i:13418162 original size:25 final size:25
Alignment explanation
Indices: 13418128--13418178 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
13418118 GTCTGGTGAT
13418128 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
*
13418153 CTTAGACTGGGGATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
13418178 C
1 C
13418179 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:13424802 original size:26 final size:26
Alignment explanation
Indices: 13424764--13424819 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
13424754 GGCTCACAAT
13424764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13424790 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13424816 CTTA
1 CTTA
13424820 AGCCAACCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13425683 original size:26 final size:26
Alignment explanation
Indices: 13425645--13425697 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13425635 CTAGTTCAAT
13425645 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13425671 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13425697 C
1 C
13425698 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13426182 original size:26 final size:26
Alignment explanation
Indices: 13426146--13426198 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13426136 TCGGTTCAAT
13426146 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* * *
13426172 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13426198 C
1 C
13426199 CTCAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:13426413 original size:501 final size:495
Alignment explanation
Indices: 13425436--13427006 Score: 1368
Period size: 501 Copynumber: 3.2 Consensus size: 495
13425426 GTCGATCCCA
* * *
13425436 CTGCTGGTCCTGCTGCCACAACCCTCGCTCTGGCTGGGGCTTAGACATGGAATGAACT-TTGTAT
1 CTGCTGGTCC-CCTGCCACAACCCTCGGTCT-GCTGGGGCTTAGACATGGAATGAACTCCT-TAT
* * ** * * ** * * *
13425500 GCCTAAGCCAACCCACGAAA-TGAGCATGCTGGCACTCAGCCGACTGGAGAGGCAGAATGCGCAA
63 GCCTAAGCCAACCCACGAAACAG-GCATGCGGGTGCTCAGTCGGCCAGAGAGACAAAAT-AGCAA
* * ** *
13425564 GCCGGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCTGCTACTGGTTCTACTGCCACAACC
126 GCCAGGGATCGGCCCGATCCCCCCTGCATGCTACCGATCCTG---CT-G--C--C-G---TAACC
* * *
13425629 TTCAATCTAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCG
179 TTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCG
* * * * * *
13425693 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGTAGAATGCGT
243 TATGCCT-AGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCAT
* ** ** * * * *
13425758 AAGTCAGGGATC-GACTCGATCCCCCCTGTGTATTGTTGATCTTGCTGCGGTAACCCTCGGTCTA
307 AAGTCAGGGATCGGCCT-GATCCCCCCTACGTGCTATCGATCTTGCTGCCGTAACCCTCGGTCCA
* * * * *
13425822 GTCTGGTCTTAGACTGGGAATGAACTCCGCATGCCA-AAGTTAACCCATGGAATGAGCGTACGGG
371 GTCTGATCTTAGACTAGGAATGAACTCCGTATG-CATAAGTCAACCCAT-GAATGAGCGTGCGGG
* * *
13425886 CACT-AAGTCGA-CTAGAGAGTCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCATG
434 CACTGAA-CCGATC-AAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGC-TG
* *
13425949 CTGCTGGTCCCACTGCCACAACACTAGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATG
1 CTGCTGGTCCC-CTGCCACAACCCTCGGTCT-GCTGGGGCTTAGACATGGAATGAACTCCTTATG
* * ** *
13426014 CCTAAGCCAACCCATGAAACAGGTATGCGGGTGCTCAGTCGATC-GAAGAGGCAGAAAGT-GCAA
64 CCTAAGCCAACCCACGAAACAGGCATGCGGGTGCTCAGTCGGCCAG-AGAGACA-AAA-TAGCAA
* * * * *
13426077 GTCAGGGATCGGCCCGATCTCCCCTGCATGCTACCGATCCTG-TAGCCGTAACCCTT-GGTTCGG
126 GCCAGGGATCGGCCCGATCCCCCCTGCATGCTACCGATCCTGCT-GCCGTAA-CCTTCAGTCCAG
* *
13426140 TTCAATCTTAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTCAGT
189 TTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCT-AGT
* * * ** * * * *
13426205 TAACCCATGAAACGAGCATGTAGTCGCTCAGCTGGTCGGAGAGGCAGAATGTACAAGTTAGGGAT
253 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCATAAGTCAGGGAT
* * **
13426270 CGGCCTGATCCCCCCTACGTGCTATCAATCTTCCTGTTGTAACCCTCGGTCCAGTCTGATCTTAG
318 CGGCCTGATCCCCCCTACGTGCTATCGATCTTGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAG
* *
13426335 AGTAGGAATGAACTCCGTATGCATAAGTCAACCCATGATATGAGCGTGCGGGCGCTGAACCGATC
383 ACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGA-ATGAGCGTGCGGGCACTGAACCGATC
* * *
13426400 GAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGG------TC--C--
447 AAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCTG
* *
13426439 C-GCT-G------G-CACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
1 CTGCTGGTCCCCTGCCACAACCCTCGGT-CTGCTGGGGCTTAGACATGGAATGAACTCCTTATGC
*
13426495 CTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGTCGGCCAGAGAGACAAAATACGCAAGCC
65 CTAAGCCAACCCACGAAACAGGCATGCGGGTGCTCAGTCGGCCAGAGAGACAAAATA-GCAAGCC
* * ** * * * * * * *
13426560 GGGGTTCGGTTCGATCCCCCCTGCGTGCTGCCGATTCTGCTGTCGTAACCTTCAGTCCAATCCGA
129 AGGGATCGGCCCGATCCCCCCTGCATGCTACCGATCCTGCTGCCGTAACCTTCAGTCCAGTTCAA
**
13426625 TCTTAGACT-GG---G-A-T--GTATGCTTAGACTGGGGATGAACTCCGTATGAATAGGTCAACC
194 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA-GTCAACC
* * * * * * *
13426682 CATGAAATGAGCGTGCGGGCACTCAG-TCGATCGAAGAGGCAAAATGCATAAGCCGGGGATCGCC
258 CATGAAATGAGCGTGCGGGCGCTCAGCT-GGTCGGAGAGGCAGAATGCATAAGTCAGGGATCGGC
* * * * * * * *
13426746 CCGGTCCCCCCCTCCGTGCTATCGATCCTGCTACCCTAACCCTTGGTCCGGTCTGATCTTAGACT
322 CTGAT-CCCCCCTACGTGCTATCGATCTTGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACT
* ** ** *
13426811 TGGAATGAACTATGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCACTGAGCCAGAT-AA
386 AGGAATGAACTCCGTATGCATAAGTCAACCCATG-AATGAGCGTGCGGGCACTGAACC-GATCAA
* * * **
13426875 AGAGGTATAATGCACAAGCCAGGGATCGGCCTAGTCCCCCTCTGCGTG
449 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGC-TG
** *
13426923 CTGGAGGTCCCGCTGCCACAACCCTCGATCCTGCTGGGGCTTAGACATGGAATGAACTCCTTATG
1 CTGCTGGTCCC-CTGCCACAACCCTCGGT-CTGCTGGGGCTTAGACATGGAATGAACTCCTTATG
13426988 CCTAAGCCAACCCACGAAA
64 CCTAAGCCAACCCACGAAA
13427007 GGCGCGTGCG
Statistics
Matches: 862, Mismatches: 151, Indels: 109
0.77 0.13 0.10
Matches are distributed among these distances:
471 2 0.00
472 87 0.10
473 125 0.15
474 5 0.01
475 1 0.00
476 1 0.00
478 1 0.00
479 11 0.01
480 145 0.17
481 5 0.01
484 1 0.00
485 1 0.00
486 1 0.00
488 1 0.00
489 3 0.00
490 1 0.00
493 2 0.00
494 65 0.08
495 2 0.00
500 5 0.01
501 239 0.28
502 10 0.01
504 1 0.00
505 1 0.00
507 1 0.00
509 2 0.00
512 1 0.00
513 137 0.16
514 4 0.00
515 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (495 bp):
CTGCTGGTCCCCTGCCACAACCCTCGGTCTGCTGGGGCTTAGACATGGAATGAACTCCTTATGCC
TAAGCCAACCCACGAAACAGGCATGCGGGTGCTCAGTCGGCCAGAGAGACAAAATAGCAAGCCAG
GGATCGGCCCGATCCCCCCTGCATGCTACCGATCCTGCTGCCGTAACCTTCAGTCCAGTTCAATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAGTCAACCCAT
GAAATGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCATAAGTCAGGGATCGGCCTGA
TCCCCCCTACGTGCTATCGATCTTGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACTAGGAA
TGAACTCCGTATGCATAAGTCAACCCATGAATGAGCGTGCGGGCACTGAACCGATCAAAGAGGCA
TAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCTG
Found at i:13426946 original size:159 final size:160
Alignment explanation
Indices: 13426643--13427462 Score: 578
Period size: 159 Copynumber: 5.2 Consensus size: 160
13426633 TGGGATGTAT
* * ** * *
13426643 GCTTAGACTGGGGATGAACTC-CGTATGAATAGGTCAACCCATGAAATGAGCGTGCGGGCACTCA
1 GCTTAGACTTGGAATGAACTCTC-TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * * * * * *
13426707 GTCGATCGAAGAGGCAAAATGCATAAGCCGGGGATCGCCCCGGTCCCCCCCTCCGTGCTATCGAT
65 GCCGACCAAAGAGGCATAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTAGAT
* * *
13426772 CCTGCTACC-CTAACCCTTGGTCCGGTCT-GA
130 CCCGCTGCCAC-AACCCTCGGTCCGGTCTGGA
* * * * * *
13426802 TCTTAGACTTGGAATGAACTATGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCACTGAG
1 GCTTAGACTTGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
13426867 CCAGA-TAAAGAGGTATAATGCACAAGCCAGGGATCGGCCTAGTCCCCCTCTGCGTGCTGGAGGT
66 CC-GACCAAAGAGGCATAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTAGAT
* * *
13426931 CCCGCTGCCACAACCCTCGATCCTG-CTGGG
130 CCCGCTGCCACAACCCTCGGTCCGGTCTGGA
* * * * * * *
13426961 GCTTAGACATGGAATGAACTC-CTTATGCCTAAGCCAACCCACGAAAGGCGCGTGCGGACGCTCA
1 GCTTAGACTTGGAATGAACTCTC-TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * *
13427025 ACCGACCAGAGAGGTAGAATGCGCAAGCTGAGGATCGGCCC-GAT-CCCC-CTGCGTGCTGTCA-
65 GCCGACCAAAGAGGCATAATGCACAAGCCGGGGATCGGCCCAG-TCCCCCTCTGCGTGCTGT-AG
* * * * * * * *
13427086 ATCCTGCTGTCGCAGCCCTCAGTTCGATC-CGA
128 ATCCCGCTGCCACAACCCTCGGTCCGGTCTGGA
* * * * ** *
13427118 TCTTAGACTGGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGTGCTAAG
1 GCTTAGACTTGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
*** * * * *
13427183 CCGACCGTTGAGGCATAATG-AGTAAGCCGGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCGGT
66 CCGACCAAAGAGGCATAATGCA-CAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTAGAT
* *
13427247 CCCGCTGCCACAACCCTCGGTCCAGT-TGGG
130 CCCGCTGCCACAACCCTCGGTCCGGTCTGGA
* * * * * *
13427277 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * ** *
13427342 CCGGCCGGAA-AGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCCCCC-CTATGTGCTGTCGAT
66 CCGACC-AAAGAGGCATAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTAGAT
* * * *
13427405 CCTGCT-ACAGCAACCCTCGGTTCGATCT-GA
130 CCCGCTGCCA-CAACCCTCGGTCCGGTCTGGA
* *
13427435 TCTTAGAC-TGGCAATGAACTCTGTATGC
1 GCTTAGACTTGG-AATGAACTCTCTATGC
13427463 TTAGACTGGG
Statistics
Matches: 509, Mismatches: 131, Indels: 43
0.75 0.19 0.06
Matches are distributed among these distances:
157 114 0.22
158 70 0.14
159 321 0.63
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (160 bp):
GCTTAGACTTGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCAAAGAGGCATAATGCACAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTAGATC
CCGCTGCCACAACCCTCGGTCCGGTCTGGA
Found at i:13427241 original size:316 final size:317
Alignment explanation
Indices: 13426731--13427462 Score: 844
Period size: 316 Copynumber: 2.3 Consensus size: 317
13426721 CAAAATGCAT
* * * * * * * ** *
13426731 AAGCCGGGGATCGCCCCGGTCCCCCCCTCCGTGCTATCGATCCTGCTAC-CCTAACCCTTGGTCC
1 AAGCCGAGGATCGGCCCGAT-CCCCCCTACGTGCTGTCAATCCTGCTACAGC-AACCCTCAGTTC
* * * *
13426795 GGTCTGATCTTAGACTTGGAATGAACTATGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGG
64 GATCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGG
* * * * *
13426860 CACTGAGCCAGATAAAGAGGTATAATGCACAAGCCAGGGATCGGCCTAGTCCCCCTCTGCGTGCT
129 CACTAAGCCAGACAAAGAGGCATAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCT
* *
13426925 GGAGGTCCCGCTGCCACAACCCTCGATCCTGCTGGGGCTTAGACATGGAATGAACTCCTTATGCC
194 GGAGGTCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
* * * * * *
13426990 TAAGCCAACCCACGAAAGGCGCGTGCGGACGCTCAACCGACCAGAGAGGTAGAATGCGC
259 TAAGCCAACCCACGAAACGAGCATACGGACGCTCAACCGACCAGAAAGGCAGAATGCGC
* * * *
13427049 AAGCTGAGGATCGGCCCGAT-CCCCCTGCGTGCTGTCAATCCTGCTGTC-GCAGCCCTCAGTTCG
1 AAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCAATCCTGCT-ACAGCAACCCTCAGTTCG
* * * * * *
13427112 ATCCGATCTTAGACTGGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGT
65 ATCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGC
* *** * *
13427177 GCTAAGCC-GACCGTTGAGGCATAATG-AGTAAGCCGGGGATCGGCCCAGTCCCCCTCTACGTGC
130 ACTAAGCCAGA-CAAAGAGGCATAATGCA-CAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGC
** * *
13427240 TGTCGGTCCCGCTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGC
193 TGGAGGTCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * *
13427305 CTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGCCGGAAAGGCAGAATGCGC
258 CTAAGCCAACCCACGAAACGAGCATACGGACGCTCAACCGACCAGAAAGGCAGAATGCGC
* * * * * *
13427365 AAGCCGGGGATCGGTCCGGTCCCCCCTATGTGCTGTCGATCCTGCTACAGCAACCCTCGGTTCGA
1 AAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCAATCCTGCTACAGCAACCCTCAGTTCGA
* *
13427430 TCTGATCTTAGACTGGCAATGAACTCTGTATGC
66 TCCGATCTTAGACTGGGAATGAACTCTGTATGC
13427463 TTAGACTGGG
Statistics
Matches: 345, Mismatches: 64, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
315 3 0.01
316 258 0.75
317 68 0.20
318 16 0.05
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (317 bp):
AAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCAATCCTGCTACAGCAACCCTCAGTTCGA
TCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCA
CTAAGCCAGACAAAGAGGCATAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGG
AGGTCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACGAGCATACGGACGCTCAACCGACCAGAAAGGCAGAATGCGC
Done.