Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 71 of 138
Found at i:13427465 original size:26 final size:26
Alignment explanation
Indices: 13427436--13427488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13427426 TCGATCTGAT
13427436 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCTGTATG
**
13427462 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCTGTATG
13427488 C
1 C
13427489 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCTGTATG
Found at i:13428196 original size:26 final size:26
Alignment explanation
Indices: 13428159--13428209 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13428149 GCTCAAACTC
13428159 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
13428185 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
13428210 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:13428537 original size:26 final size:26
Alignment explanation
Indices: 13428501--13428558 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
13428491 CCGATCTGAT
13428501 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
13428527 CTTATACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCATATG
13428553 CCTTAG
1 -CTTAG
13428559 TCAACCCACG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13429691 original size:26 final size:26
Alignment explanation
Indices: 13429655--13429707 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13429645 CCGGTTTGAT
13429655 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
13429681 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13429707 C
1 C
13429708 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13430695 original size:159 final size:158
Alignment explanation
Indices: 13430401--13430903 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 158
13430391 ACTCGGTATG
* * * *
13430401 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCT-AGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTG-TGGGCGCTCAG
* * * * *
13430465 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCC-ATGCATGCTGTCAAT
65 CCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTAT--AGGCTGCCAGT
*
13430529 CCTGCTGCCACAACCCTCGATTTGGTTTGAT
128 CCTGCTGCCACAACCCTCGATCTGGTTTGAT
* * * * * *
13430560 CTTAGAC-TGGGAATGAACTCCGTTTGCATAAGTCAACCCACGCAACAAGCGTGTGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTCAG
* *
13430624 CCAGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTATAGGCTGCCAGTC
65 CCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTATAGGCTGCCAGTC
* ** * * **
13430689 CCGCTGCCACAACCCTCGATCCAGCTGGGG
129 CTGCTGCCACAACCCTCGATCTGGTTTGAT
* * * ** * *
13430719 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTCAGC
* * * * *
13430784 CGGTC-AGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTA-CGTGCTGCC-GAT
66 CAGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTATAG-GCTGCCAG-T
* * * * *
13430846 CCTACTACCGCAACCCTCGGTCTGGTCTGAT
128 CCTGCTGCCACAACCCTCGATCTGGTTTGAT
13430877 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
13430904 TTAAACATGG
Statistics
Matches: 277, Mismatches: 58, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 56 0.20
159 214 0.77
160 2 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTCAGC
CAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTATAGGCTGCCAGTCCT
GCTGCCACAACCCTCGATCTGGTTTGAT
Found at i:13431195 original size:343 final size:342
Alignment explanation
Indices: 13430622--13431366 Score: 1064
Period size: 343 Copynumber: 2.2 Consensus size: 342
13430612 GTGGGTGCTG
* * **
13430622 AGCCAGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTATAG-GCTGCCA
1 AGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCG-CCCGGTCCCCCTCT-GCGTGCTGCCA
*
13430686 GTCCCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
64 GTCCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * *
13430751 CCAACCCATGAAACAGGCGTACGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAAGTCGAGGA
129 CCAACCCACGAAACAGGCGTACGGGCACTCAACCAGTCAGAGAGGCAGAATGCGCAAGTCGAAGA
*
13430816 TCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTA
194 TCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTA
* *
13430881 GACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCTGTGTGCCAAAGCCAACCCATGA
259 GACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCTGTATGCCAAAGCCAACCCACGA
*
13430946 AACGAGCCTGCAGGCACTC
324 AACGAGCATGCAGGCACTC
* * *
13430965 AGCCGGTCGAAAAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTC-G
1 AGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATC-GCCCGGTCCCCCTCTGCGTGCTGCCAG
* * *
13431029 ATCTCGCTGCCACAACCCTCGATCCAGGTAGGGCTTAGACATGGAATGAACTCCCTATGCCTTAG
65 -TCCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
** ** **
13431094 CCAACCCACGAAATGGGCGTACGGGCACTCAGTCAGTTGGAGAGGCAGAATGCGCAAGTCGAAGA
129 CCAACCCACGAAACAGGCGTACGGGCACTCAACCAGTCAGAGAGGCAGAATGCGCAAGTCGAAGA
* *
13431159 TCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCGTAACCCTCGGTCTGGTCCGATCTTA
194 TCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTA
* * * *
13431224 GACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCATCCCACGA
259 GACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCTGTATGCCAAAGCCAACCCACGA
* *
13431289 AATGAGCATGCGGGCACTC
324 AACGAGCATGCAGGCACTC
* ** * * * * *
13431308 AACCGACCGAAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGATCCCCC-CTGCATGCT
1 AGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATC-GCCCGGTCCCCCTCTGCGTGCT
13431367 TAGACATGGA
Statistics
Matches: 356, Mismatches: 43, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
342 10 0.03
343 345 0.97
344 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (342 bp):
AGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGCCCGGTCCCCCTCTGCGTGCTGCCAGT
CCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACAGGCGTACGGGCACTCAACCAGTCAGAGAGGCAGAATGCGCAAGTCGAAGATC
GGCCCGGTCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCTGTATGCCAAAGCCAACCCACGAAA
CGAGCATGCAGGCACTC
Found at i:13431249 original size:26 final size:26
Alignment explanation
Indices: 13431220--13431272 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13431210 CTGGTCCGAT
13431220 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
13431246 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
13431272 C
1 C
13431273 CTAAGCCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:13431475 original size:119 final size:119
Alignment explanation
Indices: 13431243--13431485 Score: 301
Period size: 119 Copynumber: 2.0 Consensus size: 119
13431233 TGAACTCTGT
* * *
13431243 ATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCATCCCACGAAATGAGCATGCGGGCACTC
1 ATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACGAAACGAGCATGCGGGCACTC
* * * ** *
13431308 AACCGACCGAAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCTGC
66 AACCGACAGAAGAGGCAGAATGCACAAGCCAAGGACAGGCCCGATCCCCCCTGC
* **
13431362 ATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
1 ATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACGAAACGAGCATGCGGGCACTC
* * * *
13431427 AGCCGGCTAG-AGAGGCAGAATGCACAAGCCAAGGATCAGG-TCGGTCCCCCCTGC
66 AACCGAC-AGAAGAGGCAGAATGCACAAGCCAAGGA-CAGGCCCGATCCCCCCTGC
*
13431481 GTGCT
1 ATGCT
13431486 GTTGATCCTG
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
119 101 0.96
120 4 0.04
ACGTcount: A:0.27, C:0.29, G:0.28, T:0.16
Consensus pattern (119 bp):
ATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACGAAACGAGCATGCGGGCACTC
AACCGACAGAAGAGGCAGAATGCACAAGCCAAGGACAGGCCCGATCCCCCCTGC
Found at i:13431573 original size:26 final size:26
Alignment explanation
Indices: 13431535--13431587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13431525 CCAGTCTGAT
*
13431535 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
13431561 CTTACACTTGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13431587 C
1 C
13431588 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:13432174 original size:12 final size:12
Alignment explanation
Indices: 13432159--13432193 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
13432149 ATGCTGTCGA
*
13432159 TCCTGCTGCTGG
1 TCCTACTGCTGG
13432171 TCCTACTGCTGG
1 TCCTACTGCTGG
13432183 TCCTACTGCTG
1 TCCTACTGCTG
13432194 CAACCTTCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.06, C:0.34, G:0.26, T:0.34
Consensus pattern (12 bp):
TCCTACTGCTGG
Found at i:13432253 original size:26 final size:26
Alignment explanation
Indices: 13432215--13432267 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13432205 CCAGTCTAAT
13432215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13432241 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13432267 C
1 C
13432268 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13432507 original size:189 final size:189
Alignment explanation
Indices: 13432213--13432606 Score: 417
Period size: 189 Copynumber: 2.1 Consensus size: 189
13432203 GTCCAGTCTA
** * *
13432213 ATCTTAGACTGGGAATGAACTC-C--G-T-ATGCTTAGACATGGAATGAACTCCGTATGCCTAAA
1 ATCTTAGACTGGGAATGAACTCTCTGGCTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAA
* * * ** * **
13432273 CCAACCTACGAAACAAGCGTGCGGGCACTTAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGA
66 CCAACCCACGAAACAAGCATGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGA
** *
13432338 CCGACCC-AGTCCCCCCTACGTGCTGTCAATCCTACTGTCATAACCCTCGATCCGATCC-
131 CCGACCCGA-TCCCCCCTACGTGCTGTCAATCCTACTACCACAACCCTCGATCCGATCCG
*
13432396 ATTCTTAGACTGGGAATGAACTCTCTGGCTGGGGCTTGGACATGGAACGAACTCCCTATGCCTAA
1 A-TCTTAGACTGGGAATGAACTCTCTGGCTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAA
* * * * * *
13432461 GCCAACCCATGAAA-AGGGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCATAAGCCGGG
65 ACCAACCCACGAAACA-AGCATGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAG
** * * * * * * * *
13432525 GATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTCCG
129 GACCGACCCGATCCCCCCTACGTGCTGTCAATCCTACTACCACAACCCTCGATCCGATCCG
13432586 ATCTTAGACTGGGAATGAACT
1 ATCTTAGACTGGGAATGAACT
13432607 TCGTATGCTT
Statistics
Matches: 170, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
183 1 0.01
184 21 0.12
185 1 0.01
187 1 0.01
188 2 0.01
189 142 0.84
190 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (189 bp):
ATCTTAGACTGGGAATGAACTCTCTGGCTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAA
CCAACCCACGAAACAAGCATGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGA
CCGACCCGATCCCCCCTACGTGCTGTCAATCCTACTACCACAACCCTCGATCCGATCCG
Found at i:13433233 original size:11 final size:11
Alignment explanation
Indices: 13433217--13433249 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13433207 TGGTTAGGCT
13433217 CTCCGACGATG
1 CTCCGACGATG
13433228 CTCCGACGATG
1 CTCCGACGATG
*
13433239 CTCCGATGATG
1 CTCCGACGATG
13433250 GTGCCCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:13433661 original size:158 final size:159
Alignment explanation
Indices: 13433327--13433661 Score: 349
Period size: 159 Copynumber: 2.1 Consensus size: 159
13433317 TCTTAGATTG
* * * * *
13433327 GGAATGAACTCTGTATGACTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCCATCAAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCCATCAAAG
* *
13433392 AGGTAGAATGCGCAAGTCGGGAATCAACCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGCAAC
66 AGGCAGAATGCGCAAGTCGGGAATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCAAC
* * *
13433457 AACCCTCGGTCCGACTGGGGCTTAGACAT
131 AACCCTCGGTCCGACTCGAGCTTAAACAT
* * * *
13433486 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGTGTGCAGGCACTC-AGCCAGTCGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCACTCAACCCA-TCAA
* * * * * **
13433549 GGAGGCAGAATGCGCTAG-CTGGGGATCAACCTGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGT
64 AGAGGCAGAATGCGCAAGTC-GGGAATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTG-
** ** *
13433612 C-GTAACCCTCGGTCCGGTTCGATCTTAAAC-T
127 CAACAACCCTCGGTCCGACTCGAGCTTAAACAT
13433643 AGGAATGAACTCCGTATGC
1 -GGAATGAACTCCGTATGC
13433662 TTAGACTGGG
Statistics
Matches: 144, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 63 0.44
159 80 0.56
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCCATCAAAG
AGGCAGAATGCGCAAGTCGGGAATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCAAC
AACCCTCGGTCCGACTCGAGCTTAAACAT
Found at i:13433664 original size:26 final size:26
Alignment explanation
Indices: 13433635--13433687 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13433625 CCGGTTCGAT
*
13433635 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATAAACTCCGTATG
* * *
13433661 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAAACTAGGAATAAACTCCGTATG
13433687 C
1 C
13433688 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATAAACTCCGTATG
Found at i:13434395 original size:26 final size:26
Alignment explanation
Indices: 13434357--13434407 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13434347 AGCTCAAACT
13434357 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
13434383 CTTAGACAT-GGAATGAACTTCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
13434408 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:13434730 original size:26 final size:26
Alignment explanation
Indices: 13434701--13434751 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13434691 GGTTTGATCC
13434701 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
* *
13434727 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
13434752 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:13435174 original size:158 final size:158
Alignment explanation
Indices: 13434895--13435197 Score: 342
Period size: 158 Copynumber: 1.9 Consensus size: 158
13434885 CCAGTCCAAT
* * * * * *
13434895 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGAGGGCACTCAAC
** ** * * * *
13434960 CAGCCGGAGAGCCAAAACGTTCAAGCCGGGGATCGGCCCGTTCCCTCCTGCGTGCTGCCGGT-CT
66 CAGCCGGAGAGCCAAAACGCGCAAGCCGGGGATCGGCCCCATCCCCCCTACATGCTGCCGATCCT
13435024 CGCTGCCACAACCCTCGGTCCGACTGGCA
131 -GCTGCCACAACCCTCGGTCCGACTGGCA
*
13435053 CTTAGACAT-GGAATGAACTCCCTATGCCTAGGCCAACCCACAG-AACGAGCGTGAGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCA-AGAAACGAGCGTGAGGGCACTCA
* * * * * * * *
13435116 ACCGGTCGGAGAGGCAGAATGCGCAATCTGGGGATCGGCCCCATCCCCCCTACATGCTGTCGATC
64 ACCAGCCGGAGAGCCAAAACGCGCAAGCCGGGGATCGGCCCCATCCCCCCTACATGCTGCCGATC
*
13435181 CTGCTGCCGCAACCCTC
129 CTGCTGCCACAACCCTC
13435198 AATTCGGTCC
Statistics
Matches: 118, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 114 0.97
159 4 0.03
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.17
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGAGGGCACTCAAC
CAGCCGGAGAGCCAAAACGCGCAAGCCGGGGATCGGCCCCATCCCCCCTACATGCTGCCGATCCT
GCTGCCACAACCCTCGGTCCGACTGGCA
Found at i:13435347 original size:512 final size:513
Alignment explanation
Indices: 13434383--13435366 Score: 1201
Period size: 512 Copynumber: 1.9 Consensus size: 513
13434373 ACTCCGTATC
*
13434383 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
13434448 CAACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGACCCCTTCTGTGTGCTGTCGGTCC
66 CAACCGGAGAGCCAAAACGCGCAAGCCGAGGATCGGCTCCGACCCCTCCTGCGTGCTGCCGGTCC
* * *
13434513 CACTGCCACAACCCTCAATCTGGCTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCAATCCGACTGTGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
13434578 CCCACGAAATGGACGTACGGGCGCTTAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCAA
196 CCCACGAAACGGACGTACGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAA
** * * * * *** **
13434643 CCCGGTCCCCCTGCGTGCTACCGATCCTGCTACTGTAACCCTTGGTCCGGTTTGATCCTAGACTA
261 CCCCATCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTCAATCCGGTCCGATCCTAGACTA
*
13434708 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGA
326 GGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGA
* ** ** * * * ** * *
13434773 GCGTGTGGGTGCTCAGTCTGTCGGAGAGGCAGAATGCGTAAGTTGGGGATCGGCCCGGTCCCCC-
391 GCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGGTCCCCCT
13434837 CTGCATGCTGTCGATCCTGCTACAGGTCCTACTACTGCAACTCTTGGTCCAGTCCAAT
456 CTGCATGCTGTCGATCCTGCTACAGGTCCTACTACTGCAACTCTTGGTCCAGTCCAAT
* * *
13434895 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAG
* ** * **
13434959 CCAGCCGGAGAGCCAAAACGTTCAAGCCGGGGATCGGC-CCGTTCCCTCCTGCGTGCTGCCGGTC
65 CCAACCGGAGAGCCAAAACGCGCAAGCCGAGGATCGGCTCCGACCCCTCCTGCGTGCTGCCGGTC
* * ** *
13435023 TCGCTGCCACAACCCTCGGTCCGACTG-GCACTTAGACATGGAATGAACTCCCTATGCCTAGGCC
130 CCACTGCCACAACCCTCAATCCGACTGTG-ACTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* *
13435087 AACCCAC-AGAAC-GAGCGTGA-GGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAATCTGGGG
194 AACCCACGA-AACGGA-CGT-ACGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGG
** ** * * *
13435149 ATCGGCCCCATCCCCCCTACATGCTGTCGATCCTGCTGCCGCAACCCTCAATTCGGTCCGATCTT
256 ATCAACCCCAT-CCCCCTACATGCTACCGATCCTGCTACCGCAACCCTCAATCCGGTCCGATCCT
* * *
13435214 AGACTGGGAATGAACTCCATATGCTTAGACTGGTGATGAACTCTGTATGCCTAAGTCAA-CCACT
320 AGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA-T
* * * *
13435278 AAAATGAGCGTGCGGGCACTCAACCGGCCGAAGAGGCATAATGTACAAGCTGGGGATCAGCCTGG
384 AAAACGAGCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGG
*
13435343 TCCCCCTTTGCATGCTGTCGATCC
449 TCCCCCTCTGCATGCTGTCGATCC
13435367 CGCTGCCGGT
Statistics
Matches: 392, Mismatches: 72, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
510 4 0.01
511 133 0.34
512 239 0.61
513 16 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (513 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAGC
CAACCGGAGAGCCAAAACGCGCAAGCCGAGGATCGGCTCCGACCCCTCCTGCGTGCTGCCGGTCC
CACTGCCACAACCCTCAATCCGACTGTGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGACGTACGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAA
CCCCATCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTCAATCCGGTCCGATCCTAGACTA
GGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGA
GCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGGTCCCCCT
CTGCATGCTGTCGATCCTGCTACAGGTCCTACTACTGCAACTCTTGGTCCAGTCCAAT
Found at i:13435534 original size:171 final size:171
Alignment explanation
Indices: 13435249--13435564 Score: 395
Period size: 171 Copynumber: 1.8 Consensus size: 171
13435239 TAGACTGGTG
* * *
13435249 ATGAACTCTGTATGCCTAAGTCAACCACTAAAATGAGCGTGCGGGCACTCAACCGGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCACTAAAATGAGCGTGCGGGCACTCAACCAGCCGAAGAGG
* * * * * *
13435314 CATAATGTACAAGCTGGGGATCAGCCTGGTCCCCCTTTGCATGCTGTCGATCCCGCTGCCGGTCC
66 CAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCGGTCC
*
13435379 TGCTGCCACAACCCTTGATTCAACTGGGGCTCGGACATGGA
131 TGCTACCACAACCCTTGATTCAACTGGGGCTCGGACATGGA
* * * **
13435420 ATGAACTCCGTATGCCTAAGCCAACCCAC-AATATGAGTGTGCGGGCGCTCAGTCAGCC-AGAGA
1 ATGAACTCCGTATGCCTAAGCCAA-CCACTAAAATGAGCGTGCGGGCACTCAACCAGCCGA-AGA
* * * * *
13435483 GGTAGAATGCATAAGCCGGGGATC-GACCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGG
64 GGCAGAATGCACAAGCCGGGGATCAG-CCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCGG
*
13435547 TCCTGCTACCGCAACCCT
128 TCCTGCTACCACAACCCT
13435565 CGGTCCGATC
Statistics
Matches: 121, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
170 2 0.02
171 115 0.95
172 4 0.03
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCACTAAAATGAGCGTGCGGGCACTCAACCAGCCGAAGAGG
CAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCGGTCC
TGCTACCACAACCCTTGATTCAACTGGGGCTCGGACATGGA
Found at i:13435906 original size:159 final size:158
Alignment explanation
Indices: 13435626--13435913 Score: 346
Period size: 159 Copynumber: 1.8 Consensus size: 158
13435616 AATGAACTTT
** *
13435626 GTATGCCTAAGCCAACCACGAAACGAGCATGCAGACGTTCAGCCAACCGGAGAGGCAGAATGCAT
1 GTATGCCTAAGCCAACCACGAAACGAGCATGCAGACACTCAGCCAACCAGAGAGGCAGAATGCAT
* * **
13435691 AAGCCGGGGATCGACCCGATCACCCCCTGCATGCTACCGATCCTGCTACCGTAACCCTCGGTCCG
66 AAGCCGGGGATCGACCCGATCACCCCCTACATGCTACCGATCCCGCTACCACAACCCTCGGTCCG
13435756 ATCCGATCTTAGACTGGGAATGGACATC
131 ATCCGATCTTAGACTGGGAATGGACATC
* * * * * * * *
13435784 GTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCACTGAGCCGACTAGAGAGGCATAATGCG
1 GTATGCCTAAGCCAA-CCACGAAACGAGCATGCAGACACTCAGCCAACCAGAGAGGCAGAATGCA
* * ** * *
13435849 TAAGCCGGGGATCGGCCCTG-TC-CCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGT
65 TAAGCCGGGGATCGACCC-GATCACCCC-CTACATGCTACCGATCCCGCTACCACAACCCTCGGT
13435912 CC
128 CC
13435914 AGTTGGGGCT
Statistics
Matches: 106, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
158 18 0.17
159 87 0.82
160 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (158 bp):
GTATGCCTAAGCCAACCACGAAACGAGCATGCAGACACTCAGCCAACCAGAGAGGCAGAATGCAT
AAGCCGGGGATCGACCCGATCACCCCCTACATGCTACCGATCCCGCTACCACAACCCTCGGTCCG
ATCCGATCTTAGACTGGGAATGGACATC
Found at i:13436116 original size:26 final size:26
Alignment explanation
Indices: 13436080--13436132 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13436070 TCGGTTCGAT
* *
13436080 CTTAGACTGGGAATGAACTTTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
13436106 CTTACACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
13436132 C
1 C
13436133 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:13444211 original size:158 final size:157
Alignment explanation
Indices: 13443871--13444212 Score: 415
Period size: 157 Copynumber: 2.2 Consensus size: 157
13443861 CCATATGCTT
* * *
13443871 AGACATGGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAGCGTGTGGGCACTCAGCTGG
1 AGACATGGAATGAACTCCATATGCTTAAGCCAACACACGAAACAAGCGTGTGGGCACTCAGCTCG
* * * *
13443936 ATGGAGAGGAAGAATGCACATGTCGAGGATCAACCCGATCCCTCTACGTGCTGTCGATCCTACTG
66 ATGGAGAGGAAGAATGCACAAGTCGAGGATCAACCAGATCCCCCTACGTGCTGTCGATCCTACTA
* *
13444001 GCACAACCCTCGGTCCGGCTAGGGTTG
131 GCACAACCCTCGGTCCGGCTACGATTG
* * *
13444028 AGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTCAGC-CG
1 AGACATGGAATGAACTCCATATGCTTAAGCCAACACACGAAACAAGCGTGTGGGCACTCAGCTCG
* * * * *
13444092 ATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTAG-TCCCCCCTACGTGCTGTTGATCCTA
66 AT-GGAGAGGAAGAATGCACAAGTCGAGGATCAACC-AGAT-CCCCCTACGTGCTGTCGATCCTA
* * *
13444156 CTATCACAACCCTCGGTCTGG-TCCGATCAT-
128 CTAGCACAACCCTCGGTCCGGCTACGAT--TG
13444186 AGAC-TGGGAATGAACTCCATATGCTTA
1 AGACAT-GGAATGAACTCCATATGCTTA
13444213 GACTGCGGAT
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
156 3 0.02
157 90 0.57
158 64 0.41
159 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (157 bp):
AGACATGGAATGAACTCCATATGCTTAAGCCAACACACGAAACAAGCGTGTGGGCACTCAGCTCG
ATGGAGAGGAAGAATGCACAAGTCGAGGATCAACCAGATCCCCCTACGTGCTGTCGATCCTACTA
GCACAACCCTCGGTCCGGCTACGATTG
Found at i:13444878 original size:158 final size:158
Alignment explanation
Indices: 13444594--13444889 Score: 380
Period size: 158 Copynumber: 1.9 Consensus size: 158
13444584 GCTTAGACAT
* * * * * *
13444594 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTCAGCTGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCCTGCGAGCACTCAGCTGACCGGAG
* ** *
13444659 AGGCAGAATGAGCAAGCCGGGGATCGACTCGAACCCCCCTACGTGCTATCAATCCTGCTGTCGCA
66 AGGCAGAATCAGCAAGCCGGGGATCGACTCGAACCCCCCTACGTGCTATCAATCCCACTGTCACA
13444724 ACCCTCAGTCTGGTCCGATCTTAGATGG
131 ACCCTCAGTCTGGTCCGATCTTAGATGG
* * * * *
13444752 GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATAAGCGTGCGAGCATTGAGCTGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCCTGCGAGCACTCAGCTGACCGGAG
* * * * *
13444817 AGGCATAATCTGCAAGCCGGGGATCGAC-CTGATCCCCCTCTGCGTGCTA-CGATCCCACTGTCA
66 AGGCAGAATCAGCAAGCCGGGGATCGACTC-GAACCCCC-CTACGTGCTATCAATCCCACTGTCA
13444880 CAACCCTCAG
129 CAACCCTCAG
13444890 ACCGACTAGG
Statistics
Matches: 116, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
157 1 0.01
158 106 0.91
159 9 0.08
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCCTGCGAGCACTCAGCTGACCGGAG
AGGCAGAATCAGCAAGCCGGGGATCGACTCGAACCCCCCTACGTGCTATCAATCCCACTGTCACA
ACCCTCAGTCTGGTCCGATCTTAGATGG
Found at i:13444906 original size:158 final size:158
Alignment explanation
Indices: 13444594--13444938 Score: 354
Period size: 158 Copynumber: 2.2 Consensus size: 158
13444584 GCTTAGACAT
* * * * * *
13444594 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTCAGCTGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCCTGCGAGCACTCAGCTGACCGGAG
* ** *
13444659 AGGCAGAATGAGCAAGCCGGGGATCGACTCGAACCCCCCTACGTGCTATCAATCCTGCTGTCGCA
66 AGGCAGAATCAGCAAGCCGGGGATCGACTCGAACCCCCCTACGTGCTATCAATCCCACTGTCACA
* * * * * **
13444724 ACCCTCAGTCTGGTCCGATCTTAGATGG
131 ACCCTCAGACCGCTACGATATTAGACCG
* * * * *
13444752 GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATAAGCGTGCGAGCATTGAGCTGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCCTGCGAGCACTCAGCTGACCGGAG
* * * * *
13444817 AGGCATAATCTGCAAGCCGGGGATCGAC-CTGATCCCCCTCTGCGTGCTA-CGATCCCACTGTCA
66 AGGCAGAATCAGCAAGCCGGGGATCGACTC-GAACCCCC-CTACGTGCTATCAATCCCACTGTCA
* *
13444880 CAACCCTCAGACCGACTAGGA-ATTAGACCT
129 CAACCCTCAGACCG-CTACGATATTAGACCG
* * *
13444910 GGATTGAACTGCTTATGCCTAAGCCAACC
1 GGAATGAACTCCGTATGCCTAAGCCAACC
13444939 CATGAAACGG
Statistics
Matches: 151, Mismatches: 33, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
157 1 0.01
158 138 0.91
159 12 0.08
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCCTGCGAGCACTCAGCTGACCGGAG
AGGCAGAATCAGCAAGCCGGGGATCGACTCGAACCCCCCTACGTGCTATCAATCCCACTGTCACA
ACCCTCAGACCGCTACGATATTAGACCG
Found at i:13445109 original size:26 final size:26
Alignment explanation
Indices: 13445071--13445123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13445061 TCGATCCAAT
13445071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13445097 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13445123 C
1 C
13445124 CTGAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13445450 original size:26 final size:26
Alignment explanation
Indices: 13445414--13445466 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13445404 CTGATCTGAC
* *
13445414 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13445440 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13445466 C
1 C
13445467 CTACCTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13446208 original size:158 final size:156
Alignment explanation
Indices: 13445717--13446208 Score: 445
Period size: 158 Copynumber: 3.1 Consensus size: 156
13445707 GCTTACACAT
* * * * *
13445717 GGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGT-AGAGCGCTCAACCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * *
13445781 AGGTAGAATGTGCAAGTCGGGGATCGACCCAATCCCCACCTGCGTGCTGTCGATCTTGCTACCGT
66 AGGCAGAA--TGCAAGCCGGGGATCGACCCGATCCCC-CCTGCGTGCTGTCGATCCTGCTGCCGT
* * * *
13445846 AACCCTCGGTTCGATCCGATCTTAGATTG
128 AACCATCGGTCCGGTCCGATCTTAGACTG
* * * * * * * * *
13445875 GGAATGAACTCCGTTTGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGCCGGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* ** * * **
13445940 AGGCAGAATGACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTACCGGTCCCGCTGCCACA
66 AGGCAGAATG-CAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGTA
* ** *
13446005 ACCATCGGTCCGG-CTGGGGCTGAGACAT-
129 ACCATCGGTCCGGTC-CGATCTTAGAC-TG
* * *
13446033 GGAATG-ACGTCCCTATGCCTAAGCCAACCCACGAAAC-AGACGTGCGGGTGCTCAGCTGGCCGG
1 GGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGGCCGG
* ** * * * *
13446096 AGAGGCAAAATACGCAAGCCATGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTACTGTCG
64 AGAGGCAGAAT--GCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
*
13446161 TAACCTTCGGTCCGGTCCGATCTTAGACTG
127 TAACCATCGGTCCGGTCCGATCTTAGACTG
13446191 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
13446209 TTAGACTAGG
Statistics
Matches: 256, Mismatches: 66, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 9 0.04
158 200 0.78
159 46 0.18
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAGAATGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAAC
CATCGGTCCGGTCCGATCTTAGACTG
Found at i:13446379 original size:343 final size:349
Alignment explanation
Indices: 13445875--13446680 Score: 877
Period size: 343 Copynumber: 2.3 Consensus size: 349
13445865 TCTTAGATTG
* * * * *
13445875 GGAATGAACTCCGTTTG-CATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGCCGGTCGAA
1 GGAATGAACTCCG-TAGACCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAGCCGGTCGGA
* * * * *
13445939 GAGGCAGAATG-ACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTACCGGTCCCGCTGCCA
65 GAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACATGCTACCGATCCCGCTACCA
*** * * **
13446003 CAACCATCGGTCCGGCTGGGGCTGAGACATGGAATG-ACGTCCCTATGCCTAAGCCAACCCACGA
130 CAACCATCAAACCGACTAGGAATGAGACATGGAATGAAC-TCCCTATGCCTAAGCCAACCCACGA
* * * *
13446067 AACAGACGTGCGGGTGCTCAG-CTGGCCGGAGAGGCAAAATACGCAAGCCATG-GATCGGCTCGA
194 AACAGACGTGCGGGTGCTCAGTC-GACCGGAGAGGCAAAATACACAAGCC-CGAGATCGGCCCGA
** ** *
13446130 TCCCCC-CTGCGTGCTGTCGATCCTAC-T-GT-C-G-TAAC-CTTCGGTCCGGTCCGATCTTAGA
257 TCCCCCTCTGCGTGCTGTCGATCCTACTTGGTCCTGCTAACACAACCCT-CGATCCGATCTTAGA
13446188 CTGGGAATGAACTCCGTATGCTTAGAC-T
321 CTGGGAATGAACTCCGTATGCTTAGACAT
* * * * *
13446216 AGGGATGAATTCTGTATACCTAAGTCAAACCATGAAATGAGCGTGCGAGCGCTGAGCCGGTCGGA
1 -GGAATGAACTCCGTAGACCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAGCCGGTCGGA
* * * *
13446281 GAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTACCGATCCTGCTACCA
65 GAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACATGCTACCGATCCCGCTACCA
* * *
13446346 CAACCCTCAAACCGACTAGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
130 CAACCATCAAACCGACTAGGAATGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
** * * * * * *
13446411 ATGGGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAGTGCACAAGCCCGAGATCGGCCCGGTCC
195 ACAGACGTGCGGGTGCTCAGTCGACCGGAGAGGCAAAATACACAAGCCCGAGATCGGCCCGATCC
* * * *
13446476 CCCTTCTGCGTGCTGTGGATCCTGCTGTTGGTCCTGCTACCACAACCCTCGATCCGATCTTAGAT
260 CCC-TCTGCGTGCTGTCGATCCTAC--TTGGTCCTGCTAACACAACCCTCGATCCGATCTTAGAC
*
13446541 TGGGAATGAACTTCGTATGCTTAGACAT
322 TGGGAATGAACTCCGTATGCTTAGACAT
* * * * * *
13446569 GGAATGAACTCCGTAGGCCTAAGCCAACCCACGAAATGAGCATGC-AGGCGCTCAGCCGATCGGA
1 GGAATGAACTCCGTAGACCTAAGTCAACCCATGAAATGAGCGTGCGA-GCGCTGAGCCGGTCGGA
* * *
13446633 GAGGCATAATGCGCAAGCTGGGGATCGACCCAATCCCCC-CGACATGCT
65 GAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACATGCT
13446681 GTTGATCTTG
Statistics
Matches: 379, Mismatches: 68, Indels: 25
0.80 0.14 0.05
Matches are distributed among these distances:
341 1 0.00
342 63 0.17
343 149 0.39
344 3 0.01
345 18 0.05
348 1 0.00
349 2 0.01
350 1 0.00
351 9 0.02
352 128 0.34
353 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (349 bp):
GGAATGAACTCCGTAGACCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAGCCGGTCGGAG
AGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACATGCTACCGATCCCGCTACCAC
AACCATCAAACCGACTAGGAATGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CAGACGTGCGGGTGCTCAGTCGACCGGAGAGGCAAAATACACAAGCCCGAGATCGGCCCGATCCC
CCTCTGCGTGCTGTCGATCCTACTTGGTCCTGCTAACACAACCCTCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACAT
Found at i:13448095 original size:159 final size:156
Alignment explanation
Indices: 13447794--13448294 Score: 419
Period size: 159 Copynumber: 3.2 Consensus size: 156
13447784 ACTCCGTATG
* * * *
13447794 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGGAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-TAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * ** * *
13447858 TCGGTCGGAGAGGCAGAATGCACAAGCCGGAGATC-AGCTTGGTCCCCC-CTTGCATGTTATTGA
64 -CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCGTGCATG-TA-CGA
* * *
13447921 TCTTGCTGCTGCAACCCTTGGTCCGGTCTGAT
125 TCCTGCTGCCGCAACCCTTGGTCCAGTCTGAT
* * * *
13447953 CTTACACTGGGAATGAACTTCGTATGCCTAAGTGAACCCATGAAATGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGT-AACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * *
13448018 AGGCCGAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTC-TGCATGCTACCGATC
65 -GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCGTGCATG-TA-CGATC
* ** * *
13448082 CTGCTGCCACAACCCTTGGT-TTGACTGAGG
127 CTGCTGCCGCAACCCTTGGTCCAGTCTGA-T
* ** *
13448112 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAAT-AGCGTATGGCCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-TAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * ** *
13448175 CCGTCCGGAGAGGCAAAATGCGCAAGCCAGGTATCGACCCAATCCCCCTACGTTC-TGT-CGATC
64 -CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT-CGTGCATGTACGATC
** *
13448238 CTGCTATCGCAACCCTCGGTCCAGT-TCGAT
127 CTGCTGCCGCAACCCTTGGTCCAGTCT-GAT
*
13448268 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
13448295 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 53, Indels: 31
0.77 0.15 0.09
Matches are distributed among these distances:
155 1 0.00
156 45 0.16
157 3 0.01
158 59 0.21
159 161 0.59
160 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAACCCATGAAATGAGCGTGCGGGCGCTCAGCG
GCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCGTGCATGTACGATCCTGC
TGCCGCAACCCTTGGTCCAGTCTGAT
Found at i:13448297 original size:26 final size:26
Alignment explanation
Indices: 13448268--13448320 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13448258 CCAGTTCGAT
13448268 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
13448294 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13448320 C
1 C
13448321 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13449381 original size:26 final size:26
Alignment explanation
Indices: 13449331--13449383 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13449321 CCAGTCGGAT
*
13449331 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
13449357 CTTAGACTGGGGATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
13449383 C
1 C
13449384 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:13449749 original size:26 final size:26
Alignment explanation
Indices: 13449720--13449772 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13449710 CTGGTCTAAT
*
13449720 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
13449746 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
13449772 C
1 C
13449773 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:13451084 original size:26 final size:26
Alignment explanation
Indices: 13451055--13451107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13451045 CTGGTCCGAT
13451055 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13451081 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13451107 C
1 C
13451108 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13451450 original size:26 final size:26
Alignment explanation
Indices: 13451398--13451450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13451388 CTGGTCTGAT
* *
13451398 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
13451424 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
13451450 C
1 C
13451451 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13451624 original size:26 final size:26
Alignment explanation
Indices: 13451595--13451650 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
13451585 CTGGCCTGAT
*
13451595 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13451621 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13451647 CTTA
1 CTTA
13451651 AGCCAAACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13451735 original size:197 final size:197
Alignment explanation
Indices: 13451374--13451742 Score: 492
Period size: 197 Copynumber: 1.9 Consensus size: 197
13451364 GATCCTACTG
* * *
13451374 TCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATG
1 TCGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATG
* * * * *
13451439 AACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAG
66 AACTCCGCATGCCTAAGCCAAACCACGAAAGGAGCGTGCGGGTGCTCAGCAGACCAGAGAGGCAG
* * *
13451504 AATGCACAAGCCGGGGATCAACTCGGTCCCCTCCTATGTGCTATCAATCCTGCTACTGGTCCTGC
131 AATGCACAAGCCGGGGACCAACCCGATCCCCTCCTATGTGCTATCAATCCTGCTACTGGTCCTGC
13451569 TA
196 TA
*
13451571 TCGCAACCCTTAGTCTGGCCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACAT-GGAA
1 TCGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGAC-TGGGAA
* * * *
13451634 TGAACTCCGTATGCTTAAGCCAAACCACGAAAGGAGTGTGCGGGTGCTCAGTCAG-TCAGAGAGG
64 TGAACTCCGCATGCCTAAGCCAAACCACGAAAGGAGCGTGCGGGTGCTCAG-CAGACCAGAGAGG
** * * * *
13451698 CAGAATGCGTAAGCTGGGGACCGACCCGATTCCCTCCTGTGTGCT
128 CAGAATGCACAAGCCGGGGACCAACCCGATCCCCTCCTATGTGCT
13451743 GTTGATCTTG
Statistics
Matches: 147, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
196 2 0.01
197 142 0.97
198 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (197 bp):
TCGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATG
AACTCCGCATGCCTAAGCCAAACCACGAAAGGAGCGTGCGGGTGCTCAGCAGACCAGAGAGGCAG
AATGCACAAGCCGGGGACCAACCCGATCCCCTCCTATGTGCTATCAATCCTGCTACTGGTCCTGC
TA
Found at i:13452125 original size:26 final size:26
Alignment explanation
Indices: 13452096--13452148 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13452086 CCGATCCGAT
13452096 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
13452122 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13452148 C
1 C
13452149 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:13452685 original size:158 final size:159
Alignment explanation
Indices: 13452438--13452736 Score: 370
Period size: 158 Copynumber: 1.9 Consensus size: 159
13452428 GCTTAGATTT
* * * * * *
13452438 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAATGTGTAGGTGCTTAACCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTGCAGGCGCTCAACCGATCGGAG
** * * *
13452503 AGGCAGAATGCGTAAGTCAAGGATCGA-CTCGGTCCCCCT-TACGTGCTGTC-GATCCTGCTGCC
66 AGGCAGAATGCACAAGTCAAGGATCGACCT-GGTCCCCCTCTACGCGCTGCCAG-TCCCGCTGCC
13452565 GCAACCCTCGGTCCGATCTGATCTTAAACTG
129 GCAACCCTCGGTCCGATCTGATCTTAAACTG
* * * *
13452596 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTGCAGGCGCTCAACCGATCGGAG
* ** * * *
13452661 AGGCATAATGCACAAGTCGGGGATCGGCCTGTTCCCCCTCTACGCGCTGCCAGTCCCGCTGCCTC
66 AGGCAGAATGCACAAGTCAAGGATCGACCTGGTCCCCCTCTACGCGCTGCCAGTCCCGCTGCCGC
13452726 AACCCTCGGTC
131 AACCCTCGGTC
13452737 TGGCTGGGGC
Statistics
Matches: 117, Mismatches: 21, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
158 84 0.72
159 32 0.27
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTGCAGGCGCTCAACCGATCGGAG
AGGCAGAATGCACAAGTCAAGGATCGACCTGGTCCCCCTCTACGCGCTGCCAGTCCCGCTGCCGC
AACCCTCGGTCCGATCTGATCTTAAACTG
Found at i:13452940 original size:26 final size:26
Alignment explanation
Indices: 13452904--13452956 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13452894 CTAATTCGAT
* *
13452904 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13452930 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13452956 C
1 C
13452957 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13453121 original size:807 final size:808
Alignment explanation
Indices: 13451530--13453133 Score: 1801
Period size: 807 Copynumber: 2.0 Consensus size: 808
13451520 ATCAACTCGG
* * * * * * * * *
13451530 TCCCCTCCTATGTGCTATCAATCCTGCTACTGGTCCTGCTATCGCAACCCTTAGTCTGGCCTGAT
1 TCCCCCCCTATGCGCTACCAATCCTGCTACTGGTCCTGCTACCACAACCCTCAATCCGACCTGAT
* *
13451595 CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAAACC
66 CTTAGACTGGGAATGAACTCTCTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACC
** * * ** **
13451660 ACGAAAGGAGTGTGCGGGTGCTCAGTCAGTCAGAGAGGCAGAATGCGTAAGCTGGGGACCGACCC
131 ACGAAACAAATGTGCAGGTGCTCAACCAGTCAGAGAGGCAGAATGCGTAAGCTAAGGACCGACCC
* * * ** * * * * *
13451725 GATTCCCTCCTGTGTGCTGTTGATCTTGCTGCCGTTACCTTTGATCTGGTCCATTCTTAGACTGG
196 GAGTCCCTCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCCATTCTTAAACTGG
* ** * * * * ** * *
13451790 GAATGAACTCTGTATGCCTAAGTCAACCCATGACACGAGCGTTCGAGCGTTTAGTCGGTTGGAGA
261 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCGCTCAACCGATCGGAGA
** ** * * * *
13451855 GGCATAACGTGCAAGCCAGAGATCGGCTCGGTCTGCCTCTGCGTGCTGTCGGTCCCACTACCACA
326 GGCATAACGCACAAGCCAGAGATCGGCTCGGTCCCCCTCTACGCGCTGCCAGTCCCACTACCACA
*
13451920 ACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAAT
391 ACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT
* * *
13451985 GGGTGTGCGTGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGTATCGACCCGATCCCC
456 GGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCC
* * ** * *
13452050 TTACGTTCTGTCGATCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGAATGGGAATGAACT
521 CTACGTGCTACCGATCCTGCTACCGCAACCCTCGATCCAATCCGATCTTAGAATGGGAATGAACT
* *
13452115 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCATGAAATCAGCGTGCGGGC
586 CCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTAAACCCATGAAATCAGCGTACGGGC
* ** * * * ** *
13452180 GCTCAGTCGACCGAAGAGGCCGACTAGTGAGGCATAATGCGTAAGTCGGGGATCAACCCGGTCCA
651 ACTCAACCGACCGAAGAGGCCGACAAATGAGGCATAATACACAAGTCGAGGATCAACCCGGTCCA
* * * * * ** * *
13452245 CCTCTGCGTGCTGTCGATCCCGCTATCGGTCCTGCTGCCGTAACCCTCGGTCTAACTGGGGTTTA
716 CCGCTGCATGCTGCCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCAGTCTAACTGGGGCTTA
13452310 GACATGGAATGAACTCCGATCGGCCCGA
781 GACATGGAATGAACTCCGATCGGCCCGA
* * *
13452338 TCCCCCCCTATGCGCTGCCAATCCTGCTACTGGTCTTGCTACCACAACCCTCAATCCGATCTGAT
1 TCCCCCCCTATGCGCTACCAATCCTGCTACTGGTCCTGCTACCACAACCCTCAATCCGACCTGAT
** *
13452403 CTTAGACTGGGAATGAACTCTCTATGCTTAGATTTGGAATGAACTCCGTATGCCTAAGCCAACCC
66 CTTAGACTGGGAATGAACTCTCTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACC
* * * * * *
13452468 ACGAAACAAATGTGTAGGTGCTTAACCGGTCGGAGAGGCAGAATGCGTAAG-TCAAGGATCGACT
131 ACGAAACAAATGTGCAGGTGCTCAACCAGTCAGAGAGGCAGAATGCGTAAGCT-AAGGACCGACC
* *
13452532 CG-GTCCC-CCT-TACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGA-TCTTAAA
195 CGAGTCCCTCCTGT--GTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATC-CATTCTTAAA
*
13452593 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGATCG
257 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCGCTCAACCGATCG
* * * * * * *
13452658 GAGAGGCATAATGCACAAGTCGGGGATCGGC-CTGTTCCCCCTCTACGCGCTGCCAGTCCCGCTG
322 GAGAGGCATAACGCACAAGCCAGAGATCGGCTC-GGTCCCCCTCTACGCGCTGCCAGTCCCACTA
* * * * ** *
13452722 CCTCAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTGACCCAT
386 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * *
13452787 GAAATGGGCGTGCGGGCACTTAGCTGGTTGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCTGA
451 GAAATGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA
* ** * * * *
13452852 TCCCTCCTGCGTGCTACCGAT-CTAGCTGTCGCAACCCTCGGTCTAATTCGATCTTAGATTGGGA
516 TCCC-CCTACGTGCTACCGATCCT-GCTACCGCAACCCTCGATCCAATCCGATCTTAGAATGGGA
* *
13452916 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAA-CGTGC
579 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTAAACCCATGAAATC-AGC
* * * * *
13452980 GTACGGGTATTCAACCGGCCGGAGAGG-CGACCAAAT-AGGCATAATACACAAG-CAGAGGATCT
643 GTACGGGCACTCAACCGACCGAAGAGGCCGA-CAAATGAGGCATAATACACAAGTC-GAGGATCA
* * ** * * *
13453042 GCCCGGTCCCCCGCTGCATGCTGCCGATCTTGCTGCCAGTCTTGCTGCCACAACCCTCAGTGC-G
706 ACCCGGTCCACCGCTGCATGCTGCCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCAGT-CTA
13453106 ACTGGGGCTTAGACATGGAATGAACTCC
770 ACTGGGGCTTAGACATGGAATGAACTCC
13453134 ATACGCCTAA
Statistics
Matches: 649, Mismatches: 136, Indels: 23
0.80 0.17 0.03
Matches are distributed among these distances:
805 1 0.00
806 5 0.01
807 354 0.55
808 289 0.45
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (808 bp):
TCCCCCCCTATGCGCTACCAATCCTGCTACTGGTCCTGCTACCACAACCCTCAATCCGACCTGAT
CTTAGACTGGGAATGAACTCTCTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACC
ACGAAACAAATGTGCAGGTGCTCAACCAGTCAGAGAGGCAGAATGCGTAAGCTAAGGACCGACCC
GAGTCCCTCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCCATTCTTAAACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCGCTCAACCGATCGGAGA
GGCATAACGCACAAGCCAGAGATCGGCTCGGTCCCCCTCTACGCGCTGCCAGTCCCACTACCACA
ACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT
GGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCC
CTACGTGCTACCGATCCTGCTACCGCAACCCTCGATCCAATCCGATCTTAGAATGGGAATGAACT
CCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTAAACCCATGAAATCAGCGTACGGGC
ACTCAACCGACCGAAGAGGCCGACAAATGAGGCATAATACACAAGTCGAGGATCAACCCGGTCCA
CCGCTGCATGCTGCCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCAGTCTAACTGGGGCTTA
GACATGGAATGAACTCCGATCGGCCCGA
Found at i:13453312 original size:26 final size:26
Alignment explanation
Indices: 13453283--13453335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13453273 CTGGTCCAAT
*
13453283 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13453309 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13453335 C
1 C
13453336 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13453570 original size:16 final size:16
Alignment explanation
Indices: 13453546--13453580 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13453536 CCGATCCCCT
13453546 CTGCATGCTGTCGATC
1 CTGCATGCTGTCGATC
* *
13453562 CTGCGTGCTGTTGATC
1 CTGCATGCTGTCGATC
13453578 CTG
1 CTG
13453581 TTGCCACAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.29, G:0.29, T:0.34
Consensus pattern (16 bp):
CTGCATGCTGTCGATC
Found at i:13453644 original size:26 final size:26
Alignment explanation
Indices: 13453608--13453660 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13453598 CCGGTTCGAT
* *
13453608 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
*
13453634 CTTAGACTAGGGATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
13453660 C
1 C
13453661 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCGGTATG
Found at i:13454217 original size:118 final size:118
Alignment explanation
Indices: 13454003--13454222 Score: 298
Period size: 118 Copynumber: 1.9 Consensus size: 118
13453993 CGATCTGATC
* * * * * *
13454003 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGCC
1 TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACC
* * * *
13454068 GACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCAGGTCCCCTTCTATGT
66 GACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCAGGTCCCCTTCTATGT
* * *
13454121 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGTGCTCAAC
1 TTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAAC
*
13454185 CGATCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
65 CGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
13454223 CGATCCCTCC
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
118 86 0.99
119 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.18
Consensus pattern (118 bp):
TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACC
GACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCAGGTCCCCTTCTATGT
Found at i:13454387 original size:13 final size:13
Alignment explanation
Indices: 13454369--13454393 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13454359 GGAGTTCAGT
13454369 CGATCGGAGAGGC
1 CGATCGGAGAGGC
13454382 CGATCGGAGAGG
1 CGATCGGAGAGG
13454394 TATAATGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.48, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:13454674 original size:170 final size:170
Alignment explanation
Indices: 13454441--13454950 Score: 528
Period size: 170 Copynumber: 3.1 Consensus size: 170
13454431 TGCATGCGAC
* * * *
13454441 CGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATAGAATGAA
1 CGATCCCGCTGCTGGTCCTACTGCCACAACCCTCGATCCGATC-GGGGCTTAGACATGGAATGAA
* * *
13454505 CTCCGTATGCCTAAGCCAACCCACGAAATGAGGGTGCGGGCACTCAGCCAACCGGAGAGGCAGAA
65 CTCCGTATGCCTAAGCCAACCCATGAAATGAGGGTGCGGGCACTCAGCTAGCCGGAGAGGCAGAA
* * *
13454570 TGCGCAAGTCGGGGATTGACCCAGTCCCCCCTGCGTGTTGT
130 TGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGT
* * **
13454611 CGATCCCGCTGCTGGTCCTACTGCCTCAACCCTCGATCCGATCCGATCTTAGAC-TGGGAATGAA
1 CGATCCCGCTGCTGGTCCTACTGCCACAACCCTCGATCCGATCGGGGCTTAGACAT-GGAATGAA
* * ** * * * * *
13454675 CTCCGTATGCCTAAGTCAACCTATGAAATGAATGTTCGGGCACTGAACTAGCTGGAGAGGCATAA
65 CTCCGTATGCCTAAGCCAACCCATGAAATGAGGGTGCGGGCACTCAGCTAGCCGGAGAGGCAGAA
* * * *
13454740 TGCGCAAGCCAGGGA-CCAGCTCGGT--CCCCT---T-CTGT
130 TGCGCAAGCCGGGGATCGA-CCCAGTCCCCCCTGCGTGCTGT
* * *
13454775 -G-T---GCTACTGGTCCCACTGCCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAAC
1 CGATCCCGCTGCTGGTCCTACTGCCACAACCCTCGATCCGATCGGGGCTTAGACATGGAATGAAC
* * *
13454835 TCCCTATGCCTAAGCCAACCCATGAAATG-GGCGTGCGGGCACTCAGCTGGCCGGAGAGGTAGAA
66 TCCGTATGCCTAAGCCAACCCATGAAATGAGG-GTGCGGGCACTCAGCTAGCCGGAGAGGCAGAA
* * * * *
13454899 TGCGCAAGCCGAGGATCGGCCTAATCCCCCCTGCGTGCTAT
130 TGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGT
*
13454940 CGATCCTGCTG
1 CGATCCCGCTG
13454951 TCACAACCCT
Statistics
Matches: 267, Mismatches: 56, Indels: 34
0.75 0.16 0.10
Matches are distributed among these distances:
159 115 0.43
160 2 0.01
161 5 0.02
162 1 0.00
163 1 0.00
164 4 0.01
165 4 0.01
166 1 0.00
167 1 0.00
168 5 0.02
169 2 0.01
170 125 0.47
171 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (170 bp):
CGATCCCGCTGCTGGTCCTACTGCCACAACCCTCGATCCGATCGGGGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCATGAAATGAGGGTGCGGGCACTCAGCTAGCCGGAGAGGCAGAAT
GCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGT
Found at i:13454927 original size:159 final size:159
Alignment explanation
Indices: 13454622--13454993 Score: 378
Period size: 159 Copynumber: 2.3 Consensus size: 159
13454612 GATCCCGCTG
* * * *
13454622 CTGGTCCTACTGCCTCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
1 CTGGTCCCACTGCCACAACCCTCGATCCGATCCGAGCTTAGACTGGGAATGAACTCCCTATGCCT
* * * * * * *
13454687 AAGTCAACCTATGAAATGAATGTTCGGGCACTGAACTAGCTGGAGAGGCATAATGCGCAAGCCAG
66 AAGCCAACCCATGAAATGAACGTGCGGGCACTCAACTAGCCGGAGAGGCAGAATGCGCAAGCCAG
**
13454752 GGACCAGCTCGGTCCCCTTCTGTGTGCTA
131 GGACCAGCTCAATCCCCTTCTGTGTGCTA
** *
13454781 CTGGTCCCACTGCCACAACCCTCGATCCGATTGGGGCTTAGACAT-GGAATGAACTCCCTATGCC
1 CTGGTCCCACTGCCACAACCCTCGATCCGATCCGAGCTTAGAC-TGGGAATGAACTCCCTATGCC
** * * *
13454845 TAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCTGGCCGGAGAGGTAGAATGCGCAAGCC-
65 TAAGCCAACCCATGAAATGAACGTGCGGGCACTCAACTAGCCGGAGAGGCAGAATGCGCAAGCCA
* * * *
13454909 GAGGATCGGC-CTAATCCCC-CCTGCGTGCTA
130 G-GGACCAGCTC-AATCCCCTTCTGTGTGCTA
* ** * * *
13454939 -TCGATCCTGCTGTCACAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACT
1 CT-GGTCCCACTGCCACAACCCTCGA-TCCGATCCGAGCTTAGACTGGGAATGAACT
13454994 TCGTATGCTT
Statistics
Matches: 173, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 51 0.29
159 118 0.68
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
CTGGTCCCACTGCCACAACCCTCGATCCGATCCGAGCTTAGACTGGGAATGAACTCCCTATGCCT
AAGCCAACCCATGAAATGAACGTGCGGGCACTCAACTAGCCGGAGAGGCAGAATGCGCAAGCCAG
GGACCAGCTCAATCCCCTTCTGTGTGCTA
Found at i:13455011 original size:26 final size:26
Alignment explanation
Indices: 13454975--13455027 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13454965 CCGGTCCGAT
*
13454975 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
13455001 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13455027 C
1 C
13455028 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13455242 original size:134 final size:133
Alignment explanation
Indices: 13454970--13455242 Score: 278
Period size: 134 Copynumber: 2.0 Consensus size: 133
13454960 TCAGTCCGGT
* * ** **
13454970 CCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGTTGAACTCCGTATGCCTAAGTG
1 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * ** * ** * * *
13455035 AACCCATGAAACGAGCGTCCAGGTGCTCAGCCGACCGGAAAGGCATAATGCGTAACTCTCGGTCT
66 AACCCATGAAACGAGCGTCCAGGCACTCAACCGACCAAAAAGGCAGAATGCACAACTCACGGACC
**
13455100 GGT
131 GAC
* *
13455103 TCGATCTTAGACTGGGGAATGAACTCCATATGCTTTGACAT-GGAATGAACTCCGTATGCCTAAG
1 CCGATCTTAGACT-GGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
* * * * * *
13455167 CCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCTAAAAAGGCAGAATGCACAAGTCAGGGA
64 CCAACCCATGAAACGAGCGTCCAGGCACTCAACCGACCAAAAAGGCAGAATGCACAACTCACGGA
13455232 CCGAC
129 CCGAC
13455237 CCGATC
1 CCGATC
13455243 CCCCCTGCGT
Statistics
Matches: 110, Mismatches: 28, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
133 12 0.11
134 97 0.88
135 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (133 bp):
CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAACGAGCGTCCAGGCACTCAACCGACCAAAAAGGCAGAATGCACAACTCACGGACC
GAC
Found at i:13455624 original size:158 final size:157
Alignment explanation
Indices: 13455144--13455636 Score: 426
Period size: 158 Copynumber: 3.1 Consensus size: 157
13455134 GCTTTGACAT
* ** * * * * **
13455144 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCG-GCTAAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGATTGTACGGGCGCTCAGCCGATC-GGA
* * * * * * **
13455208 AAGGCAGAATGCACAAGTC-AGGGACCGACCCGATCCCCCCTGCGTGCTGTTGATCCTGTTGTTG
65 GAGGCAGAATGCACAAGTCGA-GGATCGA-CTGATCCCCCCTGCATGCTGTCGATCCTGCTGCCG
13455272 CAA-CCTCAGTCTGGTTCGATCTTAGACTG
128 CAACCCTCAGTCTGGTTCGATCTTAGACTG
* ** * * * *
13455301 GGAATGAACTTCGTATGCCTAAGTGAATCCTCGAAAC-ATGTGTAAGGGCGCTGAGCCGATCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAT-TGTACGGGCGCTCAGCCGATCGG-
* ** * * * * **
13455365 AGAGGCATAATGTGCATA-CCGGGGATCGACTCGATCCCCTTCTGCATGCTGTCGGTCCCACTGC
64 AGAGGCAGAATGCACA-AGTCGAGGATCGACT-GATCCCC-CCTGCATGCTGTCGATCCTGCTGC
* * * * **
13455429 CACAACCCTCAGTTTCGTTGGGGCTTAGACAT-
126 CGCAACCCTCAGTCTGGTTCGATCTTAGAC-TG
*
13455461 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGATTGTACGGGCGCTCAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGATTGTACGGGCGCTCAGCCGATCGGAG
* * *
13455526 AGGTAGAATGCACAAGTCGAGGATCGATCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGCCGGA
66 AGGCAGAATGCACAAGTCGAGGATCGA-CTGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCA
13455591 ACCCTC-GATCTGG-TCTGATCTTAGACTG
130 ACCCTCAG-TCTGGTTC-GATCTTAGACTG
*
13455619 GGAATGAACTTCGTATGC
1 GGAATGAACTCCGTATGC
13455637 TTAGACTGGG
Statistics
Matches: 254, Mismatches: 67, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
156 1 0.00
157 47 0.19
158 83 0.33
159 47 0.19
160 73 0.29
161 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGATTGTACGGGCGCTCAGCCGATCGGAG
AGGCAGAATGCACAAGTCGAGGATCGACTGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAA
CCCTCAGTCTGGTTCGATCTTAGACTG
Found at i:13455661 original size:26 final size:26
Alignment explanation
Indices: 13455610--13455662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13455600 CTGGTCTGAT
* *
13455610 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13455636 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13455662 C
1 C
13455663 CTAAGTCACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13456007 original size:26 final size:26
Alignment explanation
Indices: 13455978--13456030 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13455968 TTGGTCTGAT
*
13455978 CTTAGAC-TGGAAATGAACTCTGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
13456004 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13456030 C
1 C
13456031 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13456358 original size:159 final size:157
Alignment explanation
Indices: 13456004--13456505 Score: 443
Period size: 158 Copynumber: 3.2 Consensus size: 157
13455994 ACTCTGTATG
* * * * *
13456004 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAACGAGCATTCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * * * * *
13456069 CGATCGGAGAGGCCAAATGTGCAAGCCAGGGACCGGCCCGATCCTCTCTGCGTGTTGTCAATCCT
66 CGATCGGAGAGG-CAAATGCGCAAGCCGGGGATCGGCCCGATCCTCTCTACGTGCTATCAATCCC
* *
13456134 GCTGCCCCAACCCTCGTTCTGATCCAAT
130 GCTGCCACAACCCTCGGTCTGATCCAAT
* * * *
13456162 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* **
13456226 CCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCTCCTCTACGTGCTATCGGTC
65 CCGATCGGAGAGGCA-AATGCGCAAGCCGGGGATCGGCCCGATCCT-CTCTACGTGCTATCAATC
* ****
13456291 CCGCTGCCACAACCCTCGGTCTGGCTGGGGT
128 CCGCTGCCACAACCCTCGGTCT-GATCCAAT
* * * * * **
13456322 -TTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGCGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * * * * * * * ** *
13456386 CGGTCGAAGAGGCAGAATGCGTAAACCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCT
66 CGATCGGAGAGGCA-AATGCGCAAGCCGGGGATCGGCCCGATCCTCTCTACGTGCTATCAATCCC
* * ** * * *
13456451 ACTGTCGTAACCCTCGGTCCGGTCCGAT
130 GCTGCCACAACCCTCGGTCTGATCCAAT
*
13456479 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
13456506 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 63, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 8 0.03
158 142 0.52
159 120 0.44
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
CGATCGGAGAGGCAAATGCGCAAGCCGGGGATCGGCCCGATCCTCTCTACGTGCTATCAATCCCG
CTGCCACAACCCTCGGTCTGATCCAAT
Found at i:13456530 original size:26 final size:26
Alignment explanation
Indices: 13456479--13456531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13456469 CCGGTCCGAT
* *
13456479 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13456505 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13456531 C
1 C
13456532 CTAAGTCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13457307 original size:26 final size:26
Alignment explanation
Indices: 13457271--13457323 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13457261 CTGGTCCAAT
*
13457271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
13457297 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13457323 C
1 C
13457324 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13458829 original size:26 final size:26
Alignment explanation
Indices: 13458793--13458845 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13458783 CTGGTTCGAT
13458793 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13458819 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13458845 C
1 C
13458846 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13459161 original size:26 final size:26
Alignment explanation
Indices: 13459132--13459193 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
13459122 TGCCACAACC
*
13459132 CTCTGTATGCTTAGGCTGGGGATGAA
1 CTCTGTATGCTTAGACTGGGGATGAA
13459158 CTCTGTATGCTTAGACTGGGGATGAA
1 CTCTGTATGCTTAGACTGGGGATGAA
*
13459184 CTCCGTATGC
1 CTCTGTATGC
13459194 CTAAGTCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (26 bp):
CTCTGTATGCTTAGACTGGGGATGAA
Found at i:13466539 original size:26 final size:26
Alignment explanation
Indices: 13466508--13466563 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
13466498 GAAACCCCCA
13466508 ATGCTTAGACTGAGGATGAACTCCGT
1 ATGCTTAGACTGAGGATGAACTCCGT
*
13466534 ATGCTTAGACTGGGGATGAACTCCGT
1 ATGCTTAGACTGAGGATGAACTCCGT
13466560 ATGC
1 ATGC
13466564 ATAAGTCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
ATGCTTAGACTGAGGATGAACTCCGT
Found at i:13467065 original size:158 final size:159
Alignment explanation
Indices: 13466693--13467083 Score: 423
Period size: 159 Copynumber: 2.5 Consensus size: 159
13466683 TGTCGGTCCT
* *
13466693 GCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 GCTACCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
13466758 CCACGAAACAAGCGTACGGGCGCTCAGCTAACTGGAGAGGCATAATATACAAGTCGGGGATTAGC
66 CCACGAAACAAGCGTACGGGCGCTCAACTAACTGGAGAGGCATAATACACAAGCCGGGGATCAGC
* * *
13466823 CCGATCCCCCCTTGCGTGCTGTCGATCCT
131 CCGATCCCCCCTTGCATGCTGCCGATCCC
* * ** * *
13466852 GCTACCGCAACCCTCAGTCCGGTCT-GATCTTAGAC-TACGAATGAACTCCGTATGCCTAAGTCA
1 GCTACCACAACCCTCAGTCCGAT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
** * * *
13466915 ACCCACGAAATGAGCGTGCGGGCGCTGAACTGA-TCGGAGAGGCATAAT-CACAAGCCGGGGATC
64 ACCCACGAAACAAGCGTACGGGCGCTCAACTAACT-GGAGAGGCATAATACACAAGCCGGGGATC
* * * * *
13466978 GGCCTGGT-CCACTTCTGCATGCTGCCGATCCC
128 AGCCCGATCCCCCCT-TGCATGCTGCCGATCCC
* * * * * *
13467010 GCTGCCACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATTAACTCCCTATGCCTAAGCCGAC
1 GCTACCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
*
13467075 CCACTAAAC
66 CCACGAAAC
13467084 GGGCGTACAG
Statistics
Matches: 187, Mismatches: 39, Indels: 13
0.78 0.16 0.05
Matches are distributed among these distances:
157 5 0.03
158 89 0.48
159 92 0.49
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (159 bp):
GCTACCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACAAGCGTACGGGCGCTCAACTAACTGGAGAGGCATAATACACAAGCCGGGGATCAGC
CCGATCCCCCCTTGCATGCTGCCGATCCC
Found at i:13467954 original size:26 final size:26
Alignment explanation
Indices: 13467916--13467968 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13467906 GGCTTAAAAT
13467916 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13467942 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13467968 C
1 C
13467969 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13468355 original size:157 final size:156
Alignment explanation
Indices: 13467941--13468377 Score: 418
Period size: 158 Copynumber: 2.8 Consensus size: 156
13467931 AACTCCGTAT
* *
13467941 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * *
13468006 CCGGCCAAAGAGGCAGAATGCTCAAGCCGGGGACTGGCCCGATCCCCCTCTGCATGCTATCGATC
66 CCGGCCGAAGAGGCAGAATGAGCAAG-CGGGGA-TCGCCCGGTCCCCCTCTGCGTGCTAACGATC
* * * *
13468071 CCGTTGCCGCAACCCTCGTCTAGTCTGG
129 CAGCTGCCGCAAACCTCGTCTAGGCTGG
* * ** * * * *
13468099 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTTAACACACGAAACGAGCATGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
13468163 GTCGGTCGAAGAGGCATAAT-ACGAAAGCTGAGGATCAGCCCGGTCCCCCTCTGCGTGCTAACGA
65 GCCGGCCGAAGAGGCAGAATGA-GCAAGC-GGGGATC-GCCCGGTCCCCCTCTGCGTGCTAACGA
* *
13468227 TCTAGCTG-C-CAAACCTCGGTC-CGGCTAGG
127 TCCAGCTGCCGCAAACCTC-GTCTAGGCT-GG
* * * * *
13468256 GCTTAGACATGGAATCAACTCCCTATGCCCAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
13468321 CCGACCGAAGAGGTAGAATGAGCAAGTCGGGGATCGACCCAGTCCCCC-CTGCGTGCT
66 CCGGCCGAAGAGGCAGAATGAGCAAG-CGGGGATCG-CCCGGTCCCCCTCTGCGTGCT
13468378 GCCCATCCTA
Statistics
Matches: 220, Mismatches: 49, Indels: 22
0.76 0.17 0.08
Matches are distributed among these distances:
156 20 0.09
157 93 0.42
158 107 0.49
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGAGCAAGCGGGGATCGCCCGGTCCCCCTCTGCGTGCTAACGATCCA
GCTGCCGCAAACCTCGTCTAGGCTGG
Found at i:13468465 original size:26 final size:26
Alignment explanation
Indices: 13468415--13468467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13468405 CCGGTCTGAT
*
13468415 CTTAGACTAGGAATGAGCTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
13468441 CTTAGACTAGGGATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
13468467 C
1 C
13468468 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:13468600 original size:21 final size:22
Alignment explanation
Indices: 13468576--13468622 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
13468566 GATCCCACTG
13468576 TCGGTTCTG-CTACCACAACCC
1 TCGGTTCTGACTACCACAACCC
*
13468597 TCGG-TCTGACTGCCACAACCC
1 TCGGTTCTGACTACCACAACCC
13468618 TCGGT
1 TCGGT
13468623 CTGGCTGGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.17, C:0.40, G:0.19, T:0.23
Consensus pattern (22 bp):
TCGGTTCTGACTACCACAACCC
Found at i:13468820 original size:26 final size:26
Alignment explanation
Indices: 13468791--13468841 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13468781 CCGATCTGAT
*
13468791 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13468817 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13468842 TTCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13468934 original size:376 final size:374
Alignment explanation
Indices: 13468232--13468935 Score: 948
Period size: 376 Copynumber: 1.9 Consensus size: 374
13468222 AACGATCTAG
13468232 CTGCCAAACCTCGGTCCGGCTAGGGCTTAGACATGGAATCAACTCCCTATGCCCAAGCCAACCCA
1 CTGCCAAACCTCGGTCCGGCTAGGGCTTAGACATGGAATCAACTCCCTATGCCCAAGCCAACCCA
* * * * *
13468297 TGAAATGGGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGAGCAAGTCGGGGATCGACCCA
66 CGAAACGGGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGAGCAAGTCAGGGATCGACCCA
* * *
13468362 GTCCCCCCTGCGTGCTGCCCATCCTACTACTGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGA
131 GTCCCCCCTGCGTGCTGCCCATCCTACTACTACAACCCACAGTCCGATCTGATCTTAGACTAGGA
* * **
13468427 ATGAGCTTCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCG
196 ATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCG
** * ** * *
13468492 TCCGGGGGCTCAGTCGGCCGGAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCTCTCTG
261 TCCGGGCACCCAACCGACCGGAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTG
13468557 CGTACTGTCGATCCCACTGTCGGTTCTGCTACCACAACCCTCGGTCTGA
326 CGTACTGTCGATCCCACTGTCGGTTCTGCTACCACAACCCTCGGTCTGA
* * * *
13468606 CTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCA-AA-CCTCGGTCCGGCTAGGGCTTAGACATGGAATCAACTCCCTATGCCCAAGCCAACC
** * ** *
13468671 CACGAAACGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATTCGCAAG-CTAGGGATCG-G
64 CACGAAACGGGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGAGCAAGTC-AGGGATCGAC
*** *
13468734 TTTGATCCCCCCTGCGTGCTGCCGATCCTACTA-TCACAACCCACAGTCCGATCTGATCTTAGAC
128 CCAG-TCCCCCCTGCGTGCTGCCCATCCTACTACT-ACAACCCACAGTCCGATCTGATCTTAGAC
* * **
13468798 TGGGAATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATTTCTAAGTCAACCCACAAAA
191 TAGGAATGAACTTC-GTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAA
* * * * *
13468862 CGAGCGTGCGGGCACCCAACCGATCGGAGAGGCGTAATGCACAAGCCGAGGATCAACCTGGTCCC
255 CGAGCGTCCGGGCACCCAACCGACCGGAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCC
13468927 CCTCTGCGT
320 CCTCTGCGT
13468936 GCTGCCACAA
Statistics
Matches: 282, Mismatches: 42, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
374 6 0.02
375 7 0.02
376 269 0.95
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (374 bp):
CTGCCAAACCTCGGTCCGGCTAGGGCTTAGACATGGAATCAACTCCCTATGCCCAAGCCAACCCA
CGAAACGGGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGAGCAAGTCAGGGATCGACCCA
GTCCCCCCTGCGTGCTGCCCATCCTACTACTACAACCCACAGTCCGATCTGATCTTAGACTAGGA
ATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCG
TCCGGGCACCCAACCGACCGGAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTG
CGTACTGTCGATCCCACTGTCGGTTCTGCTACCACAACCCTCGGTCTGA
Found at i:13469172 original size:26 final size:26
Alignment explanation
Indices: 13469134--13469186 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13469124 TCGATTCGAT
13469134 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13469160 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
13469186 C
1 C
13469187 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13469560 original size:158 final size:158
Alignment explanation
Indices: 13469159--13469560 Score: 362
Period size: 158 Copynumber: 2.5 Consensus size: 158
13469149 AACTCCGTAT
* *** *
13469159 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCAAGGGCGCTCAG
* ** * * ***** *
13469224 TCGATTGGAGAGGTAGAATGCGCAAGCCGGGGACCGACTCGATCCCCCCTACGTGTTGTTGATCC
66 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTACATGCCACCGAGCC
* * * *
13469289 TGCTACCGCAACCTTCGGTCAGGTCCGA
131 CGCTACCACAACCTTCAGTCAGGTCAGA
* * * * ** *
13469317 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAA-CTCAACCTAGGAAACGAGCGTGTA-GGCGTT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCG-CAAGGGCGCT
* * * * * * *
13469379 GAGCAGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTACATGCCACCG
63 CAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCGATCCCCC-CTACATGCCACCG
* * * * *
13469444 GGCCCGCTGCCACAACC-TCAGTCTGGTTAGG
127 AGCCCGCTACCACAACCTTCAGTCAGGTCAGA
* * *
13469475 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCAAGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCAAGGGCGCTCAG
13469540 CCGACCGGAGAGGTAGAATGC
66 CCGACCGGAGAGGTAGAATGC
13469561 ATAAGCCAGG
Statistics
Matches: 185, Mismatches: 52, Indels: 14
0.74 0.21 0.06
Matches are distributed among these distances:
157 3 0.02
158 161 0.87
159 21 0.11
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCAAGGGCGCTCAG
CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTACATGCCACCGAGCC
CGCTACCACAACCTTCAGTCAGGTCAGA
Found at i:13469675 original size:26 final size:26
Alignment explanation
Indices: 13469636--13469686 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13469626 GATCTGATCA
13469636 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
13469662 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
13469687 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:13470404 original size:26 final size:26
Alignment explanation
Indices: 13470353--13470405 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13470343 CCGATCCAAT
*
13470353 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13470379 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13470405 C
1 C
13470406 CGAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13470647 original size:158 final size:157
Alignment explanation
Indices: 13470379--13470860 Score: 479
Period size: 158 Copynumber: 3.0 Consensus size: 157
13470369 ACTTCATATG
* * *
13470379 CTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCATGAAACGAGCGTACGGGTGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * * * * *
13470444 CGACCGAAGAGGTAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTATCGATCCT
66 AG-CCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCT
* * *
13470509 GCTACCTCAACCCTCAGTCCAGTCCGAT
130 ACTGCCACAACCCTCAGTCCAGTCCGAT
* * * *
13470537 CTTAGA-TTGGGAATGAACTTCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * * ** **
13470600 GTAGGCCGGAGAGGCATAATGCGCAAGCCAGGGATAGACCCGGTCCCCATCTGCATGCTGCCGGC
64 GTA-GCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCC-CCTGCGTGCTATCGAT
* * * * **
13470665 CCCACTGCCACAACCCTCAGT-CTGGCTAGGG
127 CCTACTGCCACAACCCTCAGTCCAGTC-CGAT
* *
13470696 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG-
* * * * *
13470761 CTA-TCGGAGAGGCAGAATGCGTAAACCGGGGATCGACTCGGTCCCTCCTGCGTGCTATCAATCC
65 -TAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* *
13470825 TACTG-TAGCAACCCTCGGTCCAGTCCGAT
129 TACTGCCA-CAACCCTCAGTCCAGTCCGAT
13470854 CTTAGAC
1 CTTAGAC
13470861 TGTAAATGAA
Statistics
Matches: 252, Mismatches: 61, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 124 0.49
159 121 0.48
160 2 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
AGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTA
CTGCCACAACCCTCAGTCCAGTCCGAT
Found at i:13470805 original size:159 final size:157
Alignment explanation
Indices: 13470378--13470817 Score: 429
Period size: 159 Copynumber: 2.8 Consensus size: 157
13470368 AACTTCATAT
* * *
13470378 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCATGAAACGAGCGTACGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * *
13470443 TCGACCGAAGAGGTAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 -CTACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGACCC
** * *
13470508 TGCTACCTCAACCCTCAGTCCAGTCCGA
130 CACTACCACAACCCTCAGTCCAGTCAGA
* * * * *
13470536 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGTGCTC
* * * * * *
13470599 AG-TAGGCCGGAGAGGCATAATGCGCAAGCCAGGGATAGACCCGGTCCCCATCTGCATGCTGCCG
64 AGCTA--CCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCC-CCTGCATGCTACCG
* * * * *
13470663 GCCCCACTGCCACAACCCTCAGT-CTGGCTAGG
126 ACCCCACTACCACAACCCTCAGTCCAGTC-AGA
* *
13470695 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
13470760 CCTATCGGAGAGGCAGAATGCGTAAACCGGGGATCGACTCGGTCCCTCCTGCGTGCTA
66 -CTACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTA
13470818 TCAATCCTAC
Statistics
Matches: 222, Mismatches: 50, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 98 0.44
159 117 0.53
160 2 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CTACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGACCCC
ACTACCACAACCCTCAGTCCAGTCAGA
Found at i:13471077 original size:26 final size:26
Alignment explanation
Indices: 13471048--13471100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13471038 CTGGTTCGAT
13471048 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
*
13471074 CTTAGACATTGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
13471100 C
1 C
13471101 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:13471578 original size:26 final size:26
Alignment explanation
Indices: 13471549--13471601 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13471539 CTAGTCTGAT
13471549 CTTAGACTAGGA-ATGAACTCTGTATG
1 CTTAGACT-GGAGATGAACTCTGTATG
13471575 CTTAGACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCTGTATG
13471601 C
1 C
13471602 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCTGTATG
Found at i:13472609 original size:159 final size:159
Alignment explanation
Indices: 13472308--13472810 Score: 399
Period size: 159 Copynumber: 3.2 Consensus size: 159
13472298 ACTCCGTATG
* * *
13472308 CTTAGACATGGAATGAACTCCGTATGCCTAACCTAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCATAACCTAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
13472373 CGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCCTGTGTACTGTCAATCT
66 CGACCGAAGAGGCAAAATGCGCAAGCCAGGGAACGGCCCGGTCCCCTCCTGTGTACTGCCAATCC
** ***
13472438 TGCTGTTGCAACCCTCAATCTGGTTCGAT
131 CACTGCCACAACCCTCAATCTGGTTCGAT
* * *
13472467 CTTAGAC-TGGGAATGAACTTCATATGCATAA-GTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCATATGCATAACCT-AACCCACGAAACGAGCGTACGGGCGCTCA
* * ** ** * **
13472530 GCTGACCGAAGAGGCATAATGCGCAAGCTGGGGAACGGCTTGGTCCCC-CTCTGTGTGCTGCCGG
64 GCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGAACGGCCCGGTCCCCTC-CTGTGTACTGCCAA
* ** * **
13472594 TCCCACTGCCACAACCCTC-AGCTTGACTAGGG
128 TCCCACTGCCACAACCCTCAATC-TGGTTCGAT
* * * * * * * * *
13472626 CTTAGACATGGAATGAACTCCCTATGCCTAAGCC-AACCCACGAAATGGGCATGCGGGGGCCCAA
1 CTTAGACATGGAATGAACTCCATATGCATAA-CCTAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * ** *
13472690 TCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCT-TTGCGTGCTATCGATC
65 CCGACCGAAGAGGCAAAATGCGCAAGCCAGGGAACGGCCCGGTCCCCTCCTGTGTACTGCCAATC
** * * **
13472754 CTGCTACCGCAACCCTCTGTCTGGTTCGAT
130 CCACTGCCACAACCCTCAATCTGGTTCGAT
13472784 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
13472811 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 69, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 57 0.22
159 206 0.78
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCATAACCTAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCGAAGAGGCAAAATGCGCAAGCCAGGGAACGGCCCGGTCCCCTCCTGTGTACTGCCAATCC
CACTGCCACAACCCTCAATCTGGTTCGAT
Found at i:13472820 original size:26 final size:26
Alignment explanation
Indices: 13472784--13472836 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13472774 CTGGTTCGAT
13472784 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13472810 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13472836 C
1 C
13472837 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13473717 original size:26 final size:26
Alignment explanation
Indices: 13473677--13473728 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13473667 CGATCCGATA
*
13473677 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13473703 TTAGACTAGGG-ATGAACTCCGTATGC
1 TTAGACT-GGGAATGAACTCCGTATGC
13473729 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13473956 original size:249 final size:249
Alignment explanation
Indices: 13473518--13474014 Score: 665
Period size: 249 Copynumber: 2.0 Consensus size: 249
13473508 GGCTCAAAAT
* * * * * *
13473518 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAGC
* * * ** *
13473583 CGGTCGGAGAGGCAAAATGCTCAAGCCGAGGATCGGTCCGGTTCCCCCTGTGTCCTGCCGATCCT
66 CGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGTCCGGTCCCCCCTGCATCCTACCGATCCT
* * **
13473648 GTTGCCACAACCCTCAATCCGATCCGATATTAGACTGGGAATGAACTCTGTATGCTTAGACTAGG
131 GCTGCCACAACCCTCAATCCGATCCGATATTAGACTAGGAATGAACTCCATATGCTTAGACTAGG
* *
13473713 GATGAACTCCGTATGCCTAAGTCAACCCATGAAGTGAGCGTACGGGCGCTCAGA
196 GATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTACGGGCGCTCAGA
** * *
13473767 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGTACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
* *
13473831 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGG-CTCGGTCCCCCCTGCATGCTACCGATC
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGTC-CGGTCCCCCCTGCATCCTACCGATC
* * * * * * * *
13473895 CTGCTGTCGCAACCCTCGATTCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTG
129 CTGCTGCCACAACCCTCAATCCGATCCGATATTAGACTAGGAATGAACTCCATATGCTTAGACTA
*
13473960 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGGCGCTCAG
194 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTACGGGCGCTCAG
13474015 CCGATGAGAG
Statistics
Matches: 213, Mismatches: 33, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
248 1 0.00
249 211 0.99
250 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (249 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAGC
CGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGTCCGGTCCCCCCTGCATCCTACCGATCCT
GCTGCCACAACCCTCAATCCGATCCGATATTAGACTAGGAATGAACTCCATATGCTTAGACTAGG
GATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTACGGGCGCTCAGA
Found at i:13473966 original size:26 final size:26
Alignment explanation
Indices: 13473925--13473977 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13473915 TCGGTCTGAT
13473925 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
13473951 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13473977 C
1 C
13473978 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13474949 original size:26 final size:26
Alignment explanation
Indices: 13474911--13474962 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13474901 CCGATCCAAT
* *
13474911 CTTAGACAGGGAATTAACTTTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
*
13474937 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
13474963 GCTAAGCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:13475342 original size:159 final size:156
Alignment explanation
Indices: 13474936--13475344 Score: 383
Period size: 159 Copynumber: 2.6 Consensus size: 156
13474926 AACTTTGTAT
* * * * **
13474936 GCTTAGACATGGAATGAACTCTGTATGGCTAAGCAAACACACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * * * *
13475001 CTGATCAGAGAGGTAAAATGCATAAGCTGGGGACCGGCCCGGTCCCCCTACGTGCTATCGATCCT
66 C-GATCAGAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGATCCCCCTACGTGCTACCGATCCT
** * *
13475066 GCTACCGTAACCCTCGGTTTGGTCTGA
130 GCTACCAAAACCCTCGATTCGGTCTGA
* * * * * ** *
13475093 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTATGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * ** * *
13475157 GCCTACCAGAGAGGCATAATGAGCAAGCCGGGGATTGACCCGATCCCCCTCTGCGTGCTGCCGAT
65 G-CGATCAGAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGAT-CCCC-CTACGTGCTACCGAT
*
13475222 CCTGCTACCAAAACCCTCGATTCGG-CTGGG
127 CCTGCTACCAAAACCCTCGATTCGGTCT-GA
* * *
13475252 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACAAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
13475317 TCGATC-GAAGAGGCAGAATGCGCAAGCC
66 -CGATCAG-AGAGGCAAAATGCGCAAGCC
13475345 AGATATCGGC
Statistics
Matches: 195, Mismatches: 50, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.01
157 78 0.40
158 8 0.04
159 107 0.55
160 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CGATCAGAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGATCCCCCTACGTGCTACCGATCCTG
CTACCAAAACCCTCGATTCGGTCTGA
Found at i:13476172 original size:26 final size:26
Alignment explanation
Indices: 13476134--13476186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13476124 GGCTCAAAAT
**
13476134 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
13476160 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
13476186 C
1 C
13476187 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:13476521 original size:159 final size:158
Alignment explanation
Indices: 13476160--13476661 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 158
13476150 ACTCCATATG
* * *
13476160 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
* * * * *
13476225 CGGTCGGAGAAGCAGAATGCACAAGCTGGGGATCGGCCTGGTCCCCCTTCCGTGCTGTTAATCCT
66 CGATCAGAGAAGCAGAATGAACAAGCCGGGGATCGGCCTGGTCCCCCTTCCGTGCTGTCAATCCT
** **
13476290 GCTACCGTAACCCTCAGTCTGGTCTGAT
131 GCTACCACAACCCTCAGTCCAGTCTGAT
* * * *
13476318 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACAAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * **
13476382 CCGATCAGAGAGGCATAATGAACAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGTC
65 CCGATCAGAGAAGCAGAATGAACAAGCCGGGGATCGGCCTGGTCCCCCT-TCCGTGCTGTCAATC
* *
13476447 C-GACTGCCACAACCCTCGGTCCAG-CTGGGA-
129 CTG-CTACCACAACCCTCAGTCCAGTCT--GAT
* * ** *
13476477 CTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGG-AGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCA-CTCAG
* * * * ** * * * * * * ** *
13476541 TCGGTCGGAGAGGCAGAATGCGCAGGCCGAGGATCGGCCCGGTCCCCCCTACGTCCTACCGATCC
65 CCGATCAGAGAAGCAGAATGAACAAGCCGGGGATCGGCCTGGTCCCCCTTCCGTGCTGTCAATCC
* * * * *
13476606 TGCTGCCGCAACCCGCGGTCCAGTCTAAT
130 TGCTACCACAACCCTCAGTCCAGTCTGAT
*
13476635 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
13476662 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 51, Indels: 22
0.79 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 156 0.55
159 121 0.43
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
CGATCAGAGAAGCAGAATGAACAAGCCGGGGATCGGCCTGGTCCCCCTTCCGTGCTGTCAATCCT
GCTACCACAACCCTCAGTCCAGTCTGAT
Found at i:13476679 original size:26 final size:26
Alignment explanation
Indices: 13476635--13476687 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13476625 CCAGTCTAAT
**
13476635 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAACAAACTTC-GTATG
*
13476661 CTTAGACTGGGGACAAACTTCGTATG
1 CTTAGACTGGGAACAAACTTCGTATG
13476687 C
1 C
13476688 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTTCGTATG
Found at i:13477560 original size:26 final size:26
Alignment explanation
Indices: 13477511--13477563 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13477501 CCAGTCTGAT
*
13477511 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAACGAATTCTGTATG
*
13477537 CTTAGACTGGGGACGAACTT-TGTATG
1 CTTAGACTGGGAACGAA-TTCTGTATG
13477563 C
1 C
13477564 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAACGAATTCTGTATG
Found at i:13477666 original size:12 final size:12
Alignment explanation
Indices: 13477649--13477691 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
13477639 CTAATCCCCC
13477649 GCTGCCGATCCT
1 GCTGCCGATCCT
*
13477661 GCTGCCGATCCC
1 GCTGCCGATCCT
* *
13477673 GCTACCGGTCCT
1 GCTGCCGATCCT
13477685 GCTGCCG
1 GCTGCCG
13477692 CAACCCTTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.07, C:0.44, G:0.28, T:0.21
Consensus pattern (12 bp):
GCTGCCGATCCT
Found at i:13477684 original size:24 final size:24
Alignment explanation
Indices: 13477646--13477691 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
13477636 AGCCTAATCC
*
13477646 CCCGCTGCCGATCCTGCTGCCGAT
1 CCCGCTACCGATCCTGCTGCCGAT
*
13477670 CCCGCTACCGGTCCTGCTGCCG
1 CCCGCTACCGATCCTGCTGCCG
13477692 CAACCCTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.07, C:0.48, G:0.26, T:0.20
Consensus pattern (24 bp):
CCCGCTACCGATCCTGCTGCCGAT
Found at i:13477899 original size:26 final size:26
Alignment explanation
Indices: 13477870--13477919 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13477860 CCGGTCCGAT
*
13477870 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGAATGGGAATGAACTCCGTACG
*
13477896 CTTAGAATGGGCATGAACTCCGTA
1 CTTAGAATGGGAATGAACTCCGTA
13477920 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTACG
Found at i:13478631 original size:26 final size:26
Alignment explanation
Indices: 13478593--13478645 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13478583 GGCTTAAAAT
* *
13478593 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
*
13478619 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
13478645 C
1 C
13478646 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:13479012 original size:159 final size:157
Alignment explanation
Indices: 13478618--13479035 Score: 378
Period size: 159 Copynumber: 2.6 Consensus size: 157
13478608 AACTCTGTAT
* *
13478618 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA-CGTGCGGGCGCTCAG
* *
13478683 CCGGTCGGA-AGGGCAGAATGCGCAAGCCGAGGATCGGCCTAATCCCCCCTACATACTATCGATC
65 CCGGTCGGAGA-GGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACATACTACCGATC
* * *
13478747 CTACTACCGCAACCCTCAGTCTAGTCTGA
129 CCACTACCACAACCCTCAGTCTAGACTGA
* * * * * * *
13478776 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATAAG-CGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAA-ACGACGTGCGGGCGCTC
** * * * * ** * * ** *
13478839 AGCCGACCGAAGAGGCATAATGCGCAAGCTGATGATCGGCCCGGTCCCCCTCTGCGTGTTACCGG
63 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCC-CTACATACTACCGA
* * * * *
13478904 TCCCGCTGCCACAACTCTC-GATC-CGACTAGG
127 TCCCACTACCACAACCCTCAG-TCTAGACT-GA
*
13478935 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC-GACGTGCGGGCGCTCAG
* * * * *
13479000 TCGGTCGGAGAGGTAGAATGGGCAAGTCGGGGATCG
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCG
13479036 CTTCGGTCCC
Statistics
Matches: 199, Mismatches: 51, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
157 2 0.01
158 93 0.47
159 101 0.51
160 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGACGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACATACTACCGATCCC
ACTACCACAACCCTCAGTCTAGACTGA
Found at i:13479969 original size:26 final size:26
Alignment explanation
Indices: 13479940--13479992 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13479930 CCTATCTGAT
13479940 CTTAGACT-GGGAATGAA-TTCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
13479966 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
13479992 C
1 C
13479993 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:13480794 original size:26 final size:26
Alignment explanation
Indices: 13480765--13480817 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13480755 CCAGTCTGAT
13480765 CTTAGACCAAGAATG-AACTCTGTATG
1 CTTAGA-CAAGAATGAAACTCTGTATG
* *
13480791 CTTAGACTAGGATGAAACTCTGTATG
1 CTTAGACAAGAATGAAACTCTGTATG
13480817 C
1 C
13480818 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGAATGAAACTCTGTATG
Found at i:13481532 original size:26 final size:26
Alignment explanation
Indices: 13481494--13481546 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13481484 GGCTCAAACT
13481494 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13481520 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13481546 C
1 C
13481547 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13481807 original size:158 final size:158
Alignment explanation
Indices: 13481519--13481830 Score: 387
Period size: 158 Copynumber: 2.0 Consensus size: 158
13481509 AACTCCGTAT
* * * * ** *
13481519 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATTAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATAAAATGAGCGTGCGGGCACTCAC
* * * * * *
13481584 TCGGCCGGAGAGGCAAATGCGCAAGCCGGGGATTGGCTCGATCCCCCTCTGCGTGCGCCCGATCC
66 CCGACCGGAGAGGCAAATGCGCAAGCCGAGGATTGCCTCGATCCCCCTCTACGTGCGACCGATCC
*
13481649 TGCTACCACAACCCTTGGTCTGGTTGGG
131 TGCTACCACAACCCTTGATCTGGTTGGG
13481677 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATAAAACTG-GCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATAAAA-TGAGCGTGCGGGCACTCA
* * * * *
13481741 CCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATTTGCCT-GGTCCCCC-CTATGTGCTACTGA
65 CCCGACCGGAGAGGCA-AATGCGCAAGCCGAGGA-TTGCCTCGATCCCCCTCTACGTGCGACCGA
**
13481804 TCCTGCTACCGTAACCCTTGATCTGGT
128 TCCTGCTACCACAACCCTTGATCTGGT
13481831 CTGATCTTAG
Statistics
Matches: 130, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
158 100 0.77
159 25 0.19
160 5 0.04
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATAAAATGAGCGTGCGGGCACTCAC
CCGACCGGAGAGGCAAATGCGCAAGCCGAGGATTGCCTCGATCCCCCTCTACGTGCGACCGATCC
TGCTACCACAACCCTTGATCTGGTTGGG
Found at i:13481867 original size:26 final size:26
Alignment explanation
Indices: 13481836--13481888 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13481826 CTGGTCTGAT
* *
13481836 CTTAGACTAGGAATGATCTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
13481862 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13481888 C
1 C
13481889 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13489888 original size:159 final size:159
Alignment explanation
Indices: 13489532--13490120 Score: 569
Period size: 159 Copynumber: 3.7 Consensus size: 159
13489522 AACTCCGTAT
* * * * * * * **
13489532 GCTTAAACGTGGAATGAACTTCGTATGCCTAAGCTAAACTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
13489597 TCGACC-AGAGAGACAGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCCTCTGCGTACTGTCGAT
66 TCGGCCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT
* * * *
13489660 CCTGCTACCGCAACCCTCTGTCTGGTCT-GA
130 CCCGCTACCACAACCCTCAGTCTGG-CTGGG
* * ** ** * * *
13489690 TCTTAGAC-TGGAAATGAACTCCGTATGTATAAGTTAACCCACGAAACAAGCGTGCGTGCACTGA
1 GCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
13489754 GTCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTACGTGCTGTCGGT
65 GTCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT
13489819 CCCGCTACCACAACCCTCAGTCTGGCTGGG
130 CCCGCTACCACAACCCTCAGTCTGGCTGGG
* * * * *
13489849 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** * *
13489914 CCGGCCGGAGAGGCAGAATGCGCAAGCTAAGGATC-AGCCCGGTCCCCC-CGACGTGCTGCCGAT
66 TCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCTCTACGTGCTGTCGAT
* * * * *
13489977 CCCACTGCCACAACCCTCGGTCCGGCTGTG
130 CCCGCTACCACAACCCTCAGTCTGGCTGGG
* * * *
13490007 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCAGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCACTCA
* * * * * *
13490072 GTCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCC
65 GTCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC
13490121 CAGCGTGCTA
Statistics
Matches: 353, Mismatches: 70, Indels: 15
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.01
158 171 0.48
159 176 0.50
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATC
CCGCTACCACAACCCTCAGTCTGGCTGGG
Found at i:13490180 original size:159 final size:157
Alignment explanation
Indices: 13489756--13490192 Score: 380
Period size: 159 Copynumber: 2.8 Consensus size: 157
13489746 TGCACTGAGT
* * * * * * ** *
13489756 CGGCCGAAGAGGCATAATGCGCAAGCCGAGGATC-GACCTGGTCCCCCTCTACGTGCTGTCGGTC
1 CGGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAG-CCCGGTCCCCC-CGACGTGCTACCGATC
* * * * * * * *
13489820 CCGCTACCACAACCCTC-AGTCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCC
64 CCACTGCCACAACCCTCGA-TCCGGC-CGTGCTAAGACATGGAATGAACTCCCTATGACTAAGCC
* *
13489884 AACCCACAAAATGGGCGTGCGGGCACTCAAC
127 AACCCACAAAACGGGCATGCGGGCACTCAAC
* * *
13489915 CGGCCGGAGAGGCAGAATGCGCAAGCTAAGGATCAGCCCGGTCCCCCCGACGTGCTGCCGATCCC
1 CGGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGGTCCCCCCGACGTGCTACCGATCCC
* * *
13489980 ACTGCCACAACCCTCGGTCCGGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAAC
66 ACTGCCACAACCCTCGATCCGGCCGT-GCTAAGACATGGAATGAACTCCCTATGACTAAGCCAAC
** **
13490045 CCATGAAACGGGCATGCAGGGCACTCAGT
130 CCACAAAACGGGCATGC-GGGCACTCAAC
* ** ** **
13490074 CGGCCGGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCC-AGCGTGCTATTGATCC
1 CGGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGGTCCCCCCGA-CGTGCTACCGATCC
* * * * *
13490138 TACTGTCGCGACCCTCGATCCGGTCCGAT-CTAAGAC-TGGGAATGAACTCCGTATG
65 CACTGCCACAACCCTCGATCCGG-CCG-TGCTAAGACAT-GGAATGAACTCCCTATG
13490193 CTTAGATTGG
Statistics
Matches: 230, Mismatches: 40, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.00
158 84 0.37
159 141 0.61
160 3 0.01
161 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.17
Consensus pattern (157 bp):
CGGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGGTCCCCCCGACGTGCTACCGATCCC
ACTGCCACAACCCTCGATCCGGCCGTGCTAAGACATGGAATGAACTCCCTATGACTAAGCCAACC
CACAAAACGGGCATGCGGGCACTCAAC
Found at i:13490743 original size:197 final size:200
Alignment explanation
Indices: 13490498--13490868 Score: 567
Period size: 197 Copynumber: 1.9 Consensus size: 200
13490488 GCTGTCCAAT
* *
13490498 CCTATTGCTGGTCCTGTTGCCACCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCT
1 CCTACTGCTGGTCCTGCTGCCACCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCT
*
13490563 GTATGCTTAGACATAGAATGAACTCTGTATG-CTAAGCCAACCCA-TGAAA-CG-AGCGTGC-GG
66 GTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATTGAAATCGAAGCGTGCGGG
* *
13490623 CACTCAGCTGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGCCTGGTCGCTCCTGCGTGCTG
131 CACTCAGCTGGTCGGGAGAGGCAGAATGCACAAGCCGAGGATCGCCTGGTCGCTCCTGCGTGCTG
13490687 TCATC
196 TCATC
* *
13490692 CCTACTGCTGGTCCTGCTGCCA-CAACCCCCTCGGGTCCGGTTCCGATCTTAGACTGGGAATGAA
1 CCTACTGCTGGTCCTGCTGCCACCAA--CCCTC-AGTCC-GATCCGATCTTAGACTGGGAATGAA
* *
13490756 CTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATTGAAATGGAAGCGTG
62 CTCTGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATTGAAATCGAAGCGTG
*
13490821 CGGGCACTCAGCTGGTCGGGAGAGGTAGAATGCACAAGCCGAGGATCG
127 CGGGCACTCAGCTGGTCGGGAGAGGCAGAATGCACAAGCCGAGGATCG
13490869 GCCCGATCCC
Statistics
Matches: 157, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
193 3 0.02
194 20 0.13
195 5 0.03
196 4 0.03
197 57 0.36
198 13 0.08
199 5 0.03
200 1 0.01
201 7 0.04
202 15 0.10
203 27 0.17
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (200 bp):
CCTACTGCTGGTCCTGCTGCCACCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCT
GTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATTGAAATCGAAGCGTGCGGG
CACTCAGCTGGTCGGGAGAGGCAGAATGCACAAGCCGAGGATCGCCTGGTCGCTCCTGCGTGCTG
TCATC
Found at i:13490777 original size:26 final size:26
Alignment explanation
Indices: 13490739--13490791 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13490729 CGGTTCCGAT
*
13490739 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13490765 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13490791 C
1 C
13490792 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13493065 original size:26 final size:26
Alignment explanation
Indices: 13493036--13493088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13493026 GTTGGCTTAG
*
13493036 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13493062 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13493088 G
1 G
13493089 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13493294 original size:184 final size:184
Alignment explanation
Indices: 13492999--13493431 Score: 501
Period size: 184 Copynumber: 2.4 Consensus size: 184
13492989 CTCTGACCGA
* * * * *
13492999 CTGAGCGTCCGCACGGTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGAGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* ** * *
13493064 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAAGATTGGCAGC
66 ATACAGAGTTCATTCCCAGTCAAAGATCAAACCGGACCGAGGGTTGCGGCAGTAAGATCGACAGC
* *
13493129 ACGCAGGGAGGACCGGGCCGATCCCTGGCTTGCGCATCCTGCCTCTCTGGTTGG
131 ACGCAGGGAGGACCGGGCCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTTGG
* * *
13493183 CTGAGAGTGCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGC
1 CTGAGAGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
** * * * *
13493248 ATATGGAGTTCATTCCCAGTCAAAGATCAAACTGGACTGAGGGTTGCGGTAGTAGGATCGACAGC
66 ATACAGAGTTCATTCCCAGTCAAAGATCAAACCGGACCGAGGGTTGCGGCAGTAAGATCGACAGC
* * * * * **
13493313 ACGTAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGG
131 ACGCAGGGAGGACCGGGCCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTTGG
* * ** * * * * *
13493367 CTGAGCG-CCTGCACGCCCATTTTGTGGGTTGGCTTAGTCATAGGGAGTTCAT-TCCATGTCTAA
1 CTGAGAGTCC-GCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAA
13493430 GC
64 GC
13493432 CCTAGCCAGA
Statistics
Matches: 207, Mismatches: 40, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
183 3 0.01
184 204 0.99
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
CTGAGAGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
ATACAGAGTTCATTCCCAGTCAAAGATCAAACCGGACCGAGGGTTGCGGCAGTAAGATCGACAGC
ACGCAGGGAGGACCGGGCCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTTGG
Found at i:13493630 original size:159 final size:156
Alignment explanation
Indices: 13493246--13493630 Score: 339
Period size: 159 Copynumber: 2.4 Consensus size: 156
13493236 CCTAGTCTAA
* * * * * * *
13493246 GCATATGGAGTTCATTCCCAGTCAAAGATCAAACTGGACTGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT-C-GTAGCAGGATCGACA
* * * * * * *
13493311 GCACGTAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
64 GCACGCAGGGGAGACTGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCAGCTCAGCGCC
* * * *
13493376 TGCACGCCCATTTTGTGGGTTGGCTTAG
129 CGCACGCCCATTTCGTGGGTTGACATAG
* * ** * **
13493404 TCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CC-AGACCGAGGG-TCGTGGCAACGGGGCC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGA-ACCGAGGGTTCGTAGC-A--GGATC
* * * *
13493465 GGCAGCACGCAGAGGGAGATTGGGTCGATCCCC-AGCTTACGCATTATGCCTCTCCGATCAGCTC
60 GACAGCACGCAG-GGGAGACTGGGCCGATCCCCGA-CTTACGCATTATGCCTCTCCGACCAGCTC
* * *
13493529 AGTGCCCGCACGCTCGTTTCGTGGGTTGACATAG
123 AGCGCCCGCACGCCCATTTCGTGGGTTGACATAG
13493563 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT-C-GTAGCAGGATCGACA
13493628 GCA
64 GCA
13493631 TATAGGGGGG
Statistics
Matches: 174, Mismatches: 39, Indels: 27
0.73 0.16 0.11
Matches are distributed among these distances:
155 3 0.02
156 2 0.01
157 4 0.02
158 45 0.26
159 109 0.63
160 5 0.03
161 2 0.01
162 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCGTAGCAGGATCGACAGC
ACGCAGGGGAGACTGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCAGCTCAGCGCCCG
CACGCCCATTTCGTGGGTTGACATAG
Found at i:13493750 original size:26 final size:26
Alignment explanation
Indices: 13493720--13493772 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13493710 GTTGGCTTAG
13493720 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13493746 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13493772 G
1 G
13493773 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13494106 original size:26 final size:26
Alignment explanation
Indices: 13494076--13494128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13494066 GTTGACTTAG
13494076 GCATACGGAGTTCATCCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
13494102 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
13494128 G
1 G
13494129 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:13494446 original size:368 final size:367
Alignment explanation
Indices: 13493965--13494681 Score: 905
Period size: 368 Copynumber: 1.9 Consensus size: 367
13493955 CGAGGGTTGT
** * * * *
13493965 GGCAGCACGCAGTGGGGGATCGGGCTGATCCCCGACTTGCACATTATGCCTCTCTGGCCAGCCTC
1 GGCAGCACGCAGAAGGGGATCGGGCTAATCCCCGACTTGCACATTATGCCTCTCCGACCAGCCCC
* * * **
13494030 TCCGATCGGCTGGGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA
66 TCAGATCGGCTGAGAGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCA
* * * *
13494095 AGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGG
131 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAG
* * * ** * * *
13494160 ATCAGTAGCAC-ACAGGGGGGACCGGGCCGGTCCCCGACTTGTGCTTTCTGCCTCTCCAGTCGGC
196 ATCAGCAGCACGACA--GGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTACAGCCGGC
* ** *
13494224 TGAGTGCCCGCATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
259 TGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * *
13494289 CCAGTCGGTCCGAGGGTTGTGGCAGTAGGACCGACAGCGGGATC
324 CCAGCCAGACCGAGGGTTGTGGCAGTAGGACCGACAGCGGGATC
** * * *
13494333 GGCAGCACGCAGAAGGGGATCGGGCTAATCCTTGGCTTGCGCATTATGCCTCTCCGACTAGCCCC
1 GGCAGCACGCAGAAGGGGATCGGGCTAATCCCCGACTTGCACATTATGCCTCTCCGACCAGCCCC
* * * * *
13494398 TCAGGTCGGTTGAGCGCCTGAACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCT
66 TCAGATCGGCTGAGAGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCA
* * ** * * **
13494463 AGTCTAAGCATATGGTGTTCATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTGTGGTAGCAAG
131 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAG
* * * * *
13494528 ATCGGCAGCACGTACAGGGGACCAGGCCGATCCCTGGCTTACGCATTCTGCCTCTACGGCCGGTT
196 ATCAGCAGCACG-ACAGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTACAGCCGGCT
* *
13494593 GAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCC
260 GAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
13494658 CAGCCAGACCGAGGGTTGTGGCAG
325 CAGCCAGACCGAGGGTTGTGGCAG
13494682 CCGGACCGTC
Statistics
Matches: 292, Mismatches: 55, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
368 289 0.99
370 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (367 bp):
GGCAGCACGCAGAAGGGGATCGGGCTAATCCCCGACTTGCACATTATGCCTCTCCGACCAGCCCC
TCAGATCGGCTGAGAGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCA
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAG
ATCAGCAGCACGACAGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTACAGCCGGCTG
AGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCCAGACCGAGGGTTGTGGCAGTAGGACCGACAGCGGGATC
Found at i:13494854 original size:158 final size:158
Alignment explanation
Indices: 13494609--13494973 Score: 339
Period size: 158 Copynumber: 2.3 Consensus size: 158
13494599 CCGCACACCC
* * * *
13494609 GTTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
1 GTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGT
* * * * *
13494674 TGTGGCAGCCGGACCGTCAGCACGTAGAG-GGGGATCGAGCC-AATCCCCGACTTGCGCATTATG
66 TGTGACAGCAGGACCGTCAGCACGCAG-GTGGGGATCGA-CCTAATCCCCGACTTGAGCATTATA
13494737 CCTCTCCACCGGCTTAGTGCCCGTACGCTT
129 CCTCTCCACCGGCTTAGTGCCCGTACGCTT
* * * * *
13494767 GTTTCATGGGTTGACTTATGCATATGGAGTTCATTCC-TAGTCTAAG-ATCAGCCTGGACTGAGG
1 GTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGCACCAGCC-AGACCGAGG
* * * * *
13494830 GTTGTGATAGCAGGATCGAT-AGCACGCAGGTGGGGATCGACCTGATCCCCGGCTTGAGCATTCT
64 GTTGTGACAGCAGGACCG-TCAGCACGCAGGTGGGGATCGACCTAATCCCCGACTTGAGCATTAT
* * * * * * *
13494894 ACCTCTCCGATC-GATTGAGCGTCTGCACGCTC
128 ACCTCTCC-ACCGGCTT-AGTGCCCGTACGCTT
* * * *
13494926 GTTTCATAGGTTCG-CTCAAGCATACGGAGTTCATTCCATGTCTAAGCA
1 GTTTCATGGGTT-GACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
13494974 TACGGAGTTC
Statistics
Matches: 167, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
157 9 0.05
158 104 0.62
159 51 0.31
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (158 bp):
GTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGT
TGTGACAGCAGGACCGTCAGCACGCAGGTGGGGATCGACCTAATCCCCGACTTGAGCATTATACC
TCTCCACCGGCTTAGTGCCCGTACGCTT
Found at i:13494973 original size:26 final size:26
Alignment explanation
Indices: 13494943--13494997 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
13494933 AGGTTCGCTC
13494943 AAGCATACGGAGTTCATT-CCATGTCT
1 AAGCATACGGAGTTCATTCCCA-GTCT
13494969 AAGCATACGGAGTTCATTCCCAGTCT
1 AAGCATACGGAGTTCATTCCCAGTCT
13494995 AAG
1 AAG
13494998 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
AAGCATACGGAGTTCATTCCCAGTCT
Found at i:13495926 original size:26 final size:26
Alignment explanation
Indices: 13495875--13495927 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13495865 GTTGGTTGAG
*
13495875 GCATACCGAGATCATTCCATGTCTAA
1 GCATACCGAGATCATTCCATGCCTAA
* *
13495901 GCATACGGAGTTCATTCTCA-GCCTAA
1 GCATACCGAGATCATTC-CATGCCTAA
13495927 G
1 G
13495928 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGATCATTCCATGCCTAA
Found at i:13496697 original size:26 final size:26
Alignment explanation
Indices: 13496646--13496698 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13496636 GTTGGCTTAG
**
13496646 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATACCTAA
*
13496672 GCATATGGAGTTCATTCCCA-ACCTAA
1 GCATACGGAGTTCATT-CCATACCTAA
13496698 G
1 G
13496699 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATACCTAA
Found at i:13503330 original size:25 final size:26
Alignment explanation
Indices: 13503295--13503344 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
13503285 GTTGACTTAG
13503295 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13503321 GCATA-GGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
13503345 GGATTGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13504188 original size:26 final size:26
Alignment explanation
Indices: 13504159--13504211 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13504149 GTTGACTTAG
13504159 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
13504185 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13504211 G
1 G
13504212 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13505364 original size:159 final size:155
Alignment explanation
Indices: 13504945--13505503 Score: 500
Period size: 158 Copynumber: 3.6 Consensus size: 155
13504935 GTGTCCCTGA
* * * * * *
13504945 CTTGCG-ATTATGCCTCTTCGGCTGGGGTCAGCG-CCGAACG-TCGTTTTG-GGGTTGACTTAGG
1 CTTGCGCATTATGCCTCTCCGACT-GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * *
13505006 CATACAAAGTTCATTCCCA-GTCTAAGATC-GTACCGGATCGAGGGTTACGGTAGCAGATCG--A
65 CATACAGAGTTCATT-CCATGTCTAAGATCAG-ACCGGACCGAGGGTTGC-GTAGCAGATCGACA
*
13505067 TAGCATGTAGGGGGATCGGGCC-AGTCCTCGA
127 TAGCA-G-AGGGGGATCGGGCCGA-TCCTCGG
* * * * * * * *
13505098 CTTGCACATTCTGCCTTTCTGGCTGGCT--GCGCGCCGCATGCTCGTTTCGTGGGTTGGCTTAGG
1 CTTGCGCATTATGCCTCTCCGACTGGCTCAGCGC-CCGCACGCTCATTTCGTGGGTTGACTTAGG
* ** * *
13505161 CATACAGAGTTCATTCCATATCTAAGCCCCAG-CCGGACCGAGGGTTGTCGTAGTGAGACCGACA
65 CATACAGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTG-CGTAG-CAGATCGACA
13505225 GTAGGCAGAGGGGGATCGGGCCGATCCTCGG
127 -TA-GCAGAGGGGGATCGGGCCGATCCTCGG
*
13505256 CTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * * * *
13505321 ATACAGAGCTCATTCCCA-GTCTAAGATCAGATCGAACCAAGGGTTGCGACAGCAGGATCGACAT
66 ATACAGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCG-TAGCA-GATCGACAT
13505385 CACGCAG-GGGGGATCGGGCCGATCC-CTGG
128 -A-GCAGAGGGGGATCGGGCCGATCCTC-GG
* * * * * * * * *
13505414 CTTGCGCATTCTGCCTTTTCGACCGGCTGAGCGCCCGCACGTTCATTTCATGGGTTGGCTTTGGC
1 CTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
13505479 ATACAGAGTTCATTCCATGTCTAAG
66 ATACAGAGTTCATTCCATGTCTAAG
13505504 CATACGGAGT
Statistics
Matches: 332, Mismatches: 50, Indels: 43
0.78 0.12 0.10
Matches are distributed among these distances:
151 3 0.01
153 13 0.04
154 23 0.07
155 49 0.15
156 7 0.02
157 5 0.02
158 146 0.44
159 76 0.23
160 10 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (155 bp):
CTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
ATACAGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGTAGCAGATCGACATAGC
AGAGGGGGATCGGGCCGATCCTCGG
Found at i:13506655 original size:157 final size:159
Alignment explanation
Indices: 13506212--13506655 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 159
13506202 GGGACCGGGC
* * * * * *
13506212 CGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACACCCGTTTCATGGGT
1 CGATACCCAGCTTGCGCATTCTACCTCTCCAGCTGACTGAGCGCCTGCACACTCGTTTCATGGGT
* * *
13506277 TGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGC--CAT
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCA-
* * **
13506340 GGGACTGACAGCACGTAGAGGGGGACCGGGT
130 GGGACTGACAACACG-ACAGGGGGACCAAGT
* * * * * * * * **
13506371 CGATCCCCGGCTTGCGTATTATGCCTCTCCAG-TCGACTCAGTG-CTCGAACACTCGTTTTGTGG
1 CGATACCCAGCTTGCGCATTCTACCTCTCCAGCT-GACTGAGCGCCT-GCACACTCGTTTCATGG
* ** * **
13506434 GTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGCAGCA
64 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCA
* *
13506497 GCA-GGA-TCGGCAACACG-CAGGGGGATCAAGT
127 GCAGGGACT-GACAACACGACAGGGGGACCAAGT
* * * * *
13506528 CGATACCTAGCTTGTGCATTCTACCTCTCCGGCTGACTGAGCGCCTGCACGCTCGTTTCATGAGT
1 CGATACCCAGCTTGCGCATTCTACCTCTCCAGCTGACTGAGCGCCTGCACACTCGTTTCATGGGT
13506593 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGC
13506656 GAGACCGGTA
Statistics
Matches: 225, Mismatches: 48, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.02
157 102 0.45
158 11 0.05
159 104 0.46
160 2 0.01
161 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CGATACCCAGCTTGCGCATTCTACCTCTCCAGCTGACTGAGCGCCTGCACACTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAG
GGACTGACAACACGACAGGGGGACCAAGT
Found at i:13506739 original size:157 final size:156
Alignment explanation
Indices: 13506188--13506785 Score: 443
Period size: 157 Copynumber: 3.8 Consensus size: 156
13506178 TAGTAGGTTT
* * * * * * * * * *
13506188 GGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGACTGA
1 GGCAGCACACAGAGGGGGACCGAGTCGATCCCAGGCTTGCTCATTATGCCTCTCCGGCAGAC--A
* * * *
13506252 GCGCCCGCACA-CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCC
64 GCGCCCGCA-AGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCC
* *
13506316 AGTCAGACCGAGGGTTGTGGCCATG-G-GACT
127 AGTCGGACCGAGGGTTGTGG-CA-GCGAGACC
* ** * * *
13506346 GACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGT-ATTATGCCTCTCCAGTC-GACT
1 GGCAGCACACAGAGGGGGACCGAGTCGATCCCAGGCTTGC-TCATTATGCCTCTCC-GGCAGA--
* * * ** *
13506409 CAGTGCTCG-AACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A
62 CAGCGCCCGCAA-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCC
* * ** *
13506472 TCAGATCGGACTGAGGGTTGCAGCAGC-AGGATC
125 CCAG-TCGGACCGAGGGTTGTGGCAGCGA-GACC
* * * * * *
13506505 GGCA--ACAC-GCAGGGGGATCAAGTCGATACCTA-GCTTG-TGCATTCTACCTCTCCGGCTGAC
1 GGCAGCACACAG-AGGGGGACCGAGTCGAT-CCCAGGCTTGCT-CATTATGCCTCTCCGGCAGAC
* * * *
13506565 TGAGCGCCTGCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
63 --AGCGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCC
13506630 CCAG-CTGGACCGAGGGTTGTGGCAGCGAGACC
125 CCAGTC-GGACCGAGGGTTGTGGCAGCGAGACC
* * * *
13506662 GGTAGCACACAGAGGGGGACCGAGCCGATCCCAGGCTTGCTCATTATGCCTCTACGGCAGGCAGC
1 GGCAGCACACAGAGGGGGACCGAGTCGATCCCAGGCTTGCTCATTATGCCTCTCCGGCAGACAGC
* * *
13506727 ACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGC
66 GCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGC
13506786 ATACGGAGTT
Statistics
Matches: 342, Mismatches: 68, Indels: 61
0.73 0.14 0.13
Matches are distributed among these distances:
155 2 0.01
156 7 0.02
157 157 0.46
158 28 0.08
159 142 0.42
160 5 0.01
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GGCAGCACACAGAGGGGGACCGAGTCGATCCCAGGCTTGCTCATTATGCCTCTCCGGCAGACAGC
GCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAGTC
GGACCGAGGGTTGTGGCAGCGAGACC
Found at i:13506794 original size:26 final size:26
Alignment explanation
Indices: 13506758--13506810 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13506748 GTTGACTTAG
13506758 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
13506784 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13506810 G
1 G
13506811 ATGGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13507067 original size:341 final size:339
Alignment explanation
Indices: 13506444--13507191 Score: 1009
Period size: 341 Copynumber: 2.2 Consensus size: 339
13506434 GTTGACTTAG
* * *
13506444 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATGAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * ** ** * *
13506509 ACACGCAGGGGGATCAAGTCGATACCTAGCTTGTGCATTCTACCTCTCCGGCTGACTGAGCGCCT
66 ACACGCAGGGGGACCAAGTCGATACCGAGCTTGCACATTCTACCTCTCCAACCGACTGAGCGCCC
* *
13506574 GCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
131 GCACGCTCGTTTCATGAGTTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
** * * *
13506639 CCGAGGGTTGTGGCAGCGAGACCGGTAGCACACAGAGGGGGACCGAGCCGATCCCAGGCTTGCTC
196 CCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAGAGCGACCGAGCCGATCCCAGGCTTGCCC
*
13506704 ATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGT
261 ATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCAT-CAGAGT
*
13506769 TCATCCTCAGTCTAA
325 TCATCCCCAGTCTAA
* * *
13506784 GCATACGGAGTTCATTCCCAGTCTAAGATGGGATCGGACCGAGGGTTGCAGCAGCAGGATCTATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATGAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
13506849 GCACGTAGGGGGGACC-AGGCTGATCCCCGA-CTTGCACATTCT-GCTCCTCTAACCGACTGAGC
66 ACACGCA-GGGGGACCAAGTC-GAT-ACCGAGCTTGCACATTCTACCT-CTCCAACCGACTGAGC
*
13506911 GCCCGCACGCTCGTTTCATG-GATTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
127 GCCCGCACGCTCGTTTCATGAG-TTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* * * ** *
13506975 CCGGACTGAGGGTTGTGGCAGCGGGACTGACAGCACGTAGAGAGCGACCGGGCCGATCCCAGGCT
191 CCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAGAGCGACCGAGCCGATCCCAGGCT
* * * *
13507040 TGCCCATTATGCGTCTGCGGTAGGCAGCACCTGCAAGCTCGTTTCTTGGGTTGACTTAGGCATCA
256 TGCCCATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATCA
13507105 GAGTTCATCCCCAGTCTAA
321 GAGTTCATCCCCAGTCTAA
* * * * *
13507124 GCATACGGAGTTCATTCCCAGTCTAAGATGTGATCGGACCGAGGGTTGCGGCAACAGGACCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATGAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
13507189 ACA
66 ACA
13507192 GGATCGACAG
Statistics
Matches: 356, Mismatches: 47, Indels: 10
0.86 0.11 0.02
Matches are distributed among these distances:
340 150 0.42
341 203 0.57
342 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (339 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATGAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
ACACGCAGGGGGACCAAGTCGATACCGAGCTTGCACATTCTACCTCTCCAACCGACTGAGCGCCC
GCACGCTCGTTTCATGAGTTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAGAGCGACCGAGCCGATCCCAGGCTTGCCC
ATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATCAGAGTT
CATCCCCAGTCTAA
Found at i:13507340 original size:352 final size:340
Alignment explanation
Indices: 13506444--13507354 Score: 992
Period size: 341 Copynumber: 2.6 Consensus size: 340
13506434 GTTGACTTAG
** * * *
13506444 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATGGGATCGGACCGAGGGTTGCAGCAACAGGATCGACA
* * * * * * ** * * * *
13506509 ACACGCA-GGGGGATCAAGTCGAT-ACCTAGCTTGTGCATTCTAC-CTCTCCG-GCTGACTGAGC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGA-CTTGCACATTCTGCTC-CT-CGAACAGACTAAGC
* * * * *
13506570 GCCTGCACGCTCGTTTCAT-GAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
128 ACCCGCACACTCATTTCATGGA-TTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* ** * *
13506634 CTGGACCGAGGGTTGTGGCAGCGAGACCGGTAGCACACAGAGGGGGACCGAGCCGATCCCAGGCT
192 C-GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGAGCGACCGAGCCGATCCCAGGCT
*
13506699 TGCTCATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATAC
256 TGCCCATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATAC
* *
13506764 GGAGTTCATCCTCAGTCTAA
321 AGAGTTCATCCCCAGTCTAA
* * *
13506784 GCATACGGAGTTCATTCCCAGTCTAAGATGGGATCGGACCGAGGGTTGCAGCAGCAGGATCTATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATGGGATCGGACCGAGGGTTGCAGCAACAGGATCGACA
* * * * * *
13506849 GCACGTAGGGGGGACCAGGCTGATCCCCGACTTGCACATTCTGCTCCTCTAACCGACTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCTCCTCGAACAGACTAAGCACC
* * *
13506914 CGCACGCTCGTTTCATGGATTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CGCACACTCATTTCATGGATTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CGG
* * ** *
13506979 ACTGAGGGTTGTGGCAGCGGGACTGACAGCACGTAGAGAGCGACCGGGCCGATCCCAGGCTTGCC
195 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGAGCGACCGAGCCGATCCCAGGCTTGCC
* * * *
13507044 CATTATGCGTCTGCGGTAGGCAGCACCTGCAAGCTCGTTTCTTGGGTTGACTTAGGCAT-CAGAG
260 CATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATACAGAG
13507108 TTCATCCCCAGTCTAA
325 TTCATCCCCAGTCTAA
*
13507124 GCATACGGAGTTCATTCCCAGTCTAAGATGTGATCGGACCGAGGGTTGCGGCAACAGGACCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATGGGATCGGACCGAGGGTT---G---CA-G-----CA
* * *
13507189 ACAGGATCGACAGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGC-CTCTCCGA
54 ACAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCTC-CT-CGA
* * ** ** **
13507253 TCAG-CTAAGCACCCGTACACTCATTTTGTGGATTGGGGTAGGCATACAAAGTTCATTCCATGTC
117 ACAGACTAAGCACCCGCACACTCATTTCATGGATTGGCATAGGCATACGGAGTTCATTCCATGTC
* *
13507317 TAAGCCCCAGACGGACCGAGGGTTGTGACAGCAGGACC
182 TAAGCCCCAG-CGGACCGAGGGTTGTGGCAGCGGGACC
13507355 CGCAGCAGGA
Statistics
Matches: 482, Mismatches: 69, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
340 130 0.27
341 203 0.42
342 7 0.01
343 1 0.00
346 2 0.00
347 1 0.00
351 1 0.00
352 133 0.28
353 4 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (340 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATGGGATCGGACCGAGGGTTGCAGCAACAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCTCCTCGAACAGACTAAGCACC
CGCACACTCATTTCATGGATTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCGGA
CCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGAGCGACCGAGCCGATCCCAGGCTTGCCC
ATTATGCCTCTACGGCAGGCAGCACCCGCAAGCTCGTTTCTTGGGTTGACTTAGGCATACAGAGT
TCATCCCCAGTCTAA
Found at i:13508852 original size:26 final size:26
Alignment explanation
Indices: 13508822--13508874 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13508812 GTTGGCTTAG
13508822 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
* *
13508848 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
13508874 G
1 G
13508875 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:13509061 original size:26 final size:26
Alignment explanation
Indices: 13509031--13509083 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13509021 GTTGACTTGG
*
13509031 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13509057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13509083 G
1 G
13509084 ATCAAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13510102 original size:26 final size:26
Alignment explanation
Indices: 13510072--13510124 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13510062 GTTGACTTAG
13510072 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13510098 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13510124 G
1 G
13510125 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.