Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 72 of 138
Found at i:13511101 original size:26 final size:26
Alignment explanation
Indices: 13511065--13511117 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13511055 GTTGACTTAG
13511065 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * **
13511091 GCATACGGAGTTCTTTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13511117 G
1 G
13511118 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13511570 original size:158 final size:158
Alignment explanation
Indices: 13511091--13511593 Score: 541
Period size: 159 Copynumber: 3.2 Consensus size: 158
13511081 CCCAGTCTAA
* * *
13511091 GCATACGGAGTTCTTTGCCA-GTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
13511155 AGCACGTAGGGGGGGACCGAGCTGATCCCTGACTTGCGCATTCTGACACTCCGA-TCGACTGAGC
65 AGCACGCA-GGGGGGACCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACT-GACTGAGC
*
13511219 GTCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 GTCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * *
13511250 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * * *
13511314 AGCACACAGAGTGGGATCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTCTGGC-CAGCTCAAC
65 AGCACGCAG-GGGGGACCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACTGA-CTGAGC
* * *
13511378 ATCCGAACGCTCGTTTCATGGGTTGACTTAG
128 GTCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ***
13511409 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATC-GAATCGAGGGTTGCAACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAG-ACCGAGGGTTGTGGCAGCAGGATCGA
* * *
13511472 CAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTTTCCGACTGACTGAGTG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACTGACTGAGCG
* * *
13511537 CCCGCACGTTCGTTTCGTGGGTTGGCTTAG
129 TCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
13511567 GCATACGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13511594 CATACGGAGT
Statistics
Matches: 277, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 96 0.35
159 173 0.62
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACTGACTGAGCGTC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13511596 original size:26 final size:26
Alignment explanation
Indices: 13511567--13511619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13511557 GTTGGCTTAG
*
13511567 GCATACGGAGTTTATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
13511593 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13511619 G
1 G
13511620 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13511964 original size:995 final size:991
Alignment explanation
Indices: 13510046--13511970 Score: 2327
Period size: 995 Copynumber: 1.9 Consensus size: 991
13510036 TGAGCGTCCG
* *
13510046 CATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
1 CATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * *
13510111 ATTCTCAGTCTAAGATCAGACCGGATCAAGGGTTGCGATAGTAGGATCGGCAGCACGCAGGGGGG
66 ATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGG
* * * * * *
13510176 ACGGACTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCTCCCATACACCCGTTTC
131 ACCGACTGATCCCCGACTTGCGCATTCTGACACTCCGATCGACTGAGCTCCCA-ACACCCGTTTC
13510241 ATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGG
195 ATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGG
** ** *
13510306 CAGCGGGACTGACAGCTTACAGAGGGGGACCGAGTTGATCTCCGGTTTACACAGTATGCCTCTCC
260 CAGCGGGACTGACAGCACACAGAGGGGGACCGAGCCGATCTCCGGCTTACACAGTATGCCTCTCC
*** * * * ** *
13510371 GGTTGGCTCAGCACCCGCATGCTCGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGT
325 GGCCAGCTCAACACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *** * * * *
13510436 CTAAGACTGGATCGGACTGAGAGTTACGGTAGCAGGATTGATAGCACGTGGGAAGGGACCGGGTC
390 CTAAGACTAGATCGAACTGAGAGTTACAACAGCAGGATCGACAGCACGAGGG-AGGGACCGGGCC
* * * * * *
13510501 GGTCCTCGGCTTACGCATTCTGTCTCTCCAGTCGGCTGAGTGCCCGCACACTTATTTCATGGGTA
454 GATCCCCGACTTACGCATTCTGCCTCTCCACTCGACTGAGTGCCCGCACACTTATTTCATGGGTA
* *
13510566 GGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAGACTTCATTTCCAGTCTAAGATCTG
519 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGACTTCATTTCCAGTCTAAGATCGG
* * * * *
13510631 ATCGGACTGAGGGTTACGGCAGTAGGACCAACAACGGGATCGACAGTACGTAGAGGGATCGGGTC
584 ATCGGACCGAGGGTTACGGCAGCAGGACCAACAACGGGATCGACAGCACGCAGAGGGATCGGGCC
* * * * * * *
13510696 GATCCCCAGCTTGCACATTTTGCCTCTTCGGCCGACCTTTTCGGCCGTCTGAGCATCCGCACGCT
649 GATCCCCAGCTTGCACATTCTGCCTCTCCGACCGACCTTTTCGGCCGGCTAAGCATCCACACACT
* *
13510761 CGTTTCATAGGCTGACTTAGGCATACGAAATTCATTCCCAGTCTAAAATCAGACCAGACCGACCC
714 CATTTCATAGGCTGACTTAGGCATAAGAAATTCATTCCCAGTCTAAAATCAGACCAGACCGACCC
* * * * *
13510826 CTGGCTTGTACATTCTACCTCTCGGGTCGGCTGAGCGCCTACACGCCTGTTTTATGGGTTGGCTT
779 CTGACTTGCACATTCTACCTCTCGGGTCGGCTGAGCGCCTACACGCCCGTTTCATGAGTTGGCTT
* * ** * *
13510891 CAACAAAGGGAGTTCCTTCTATGCCTAAGCCCCAGTCAGACCGGGGGTTGTGGCAGCGAGATTGG
844 CAACAAACGGAGTTCCTTCCATGCCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCGAGACTGA
* *
13510956 CAGCTCGTAAAGGGGGATCGAGCTGATCCTCGACTTGTGCACTATGCCTCTTCGGTTGGCCTCTC
909 CAGCACATAAAGGGGGATCGAGCTGATCCTCGACTTGTGCACTATGCCTCTTCGGTTGGCCTCTC
13511021 CGGACCGGTGAGCGCTCA
974 CGGACCGGTGAGCGCTCA
*
13511039 CATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * * * *
13511104 TTTGC-CAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGGGGG
66 ATT-CTCAGTCTAAGATCAGACCAGACCAAGGGTTGCGATAGCAGGATCGACAGCACGCA-GGGG
* *
13511168 GGACCGAGCTGATCCCTGACTTGCGCATTCTGACACTCCGATCGACTGAGCGTCCGC-ACGCCCG
129 GGACCGA-CTGATCCCCGACTTGCGCATTCTGACACTCCGATCGACTGAGC-TCC-CAACACCCG
* * *
13511232 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
191 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * * * *** *
13511297 GTGGCAGCGGGA-TCGGCAGCACACAGAGTGGGATCGGGCCGATC-CCTGGCTTGTGCATTATGC
256 GTGGCAGCGGGACT-GACAGCACACAGAGGGGGACCGAGCCGATCTCC-GGCTTACACAGTATGC
* *
13511360 CTCTCTGGCCAGCTCAACATCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
319 CTCTCCGGCCAGCTCAACACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* *
13511425 CCCAGTCTAAGA-TCAGATCGAA-TCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGG-GGG
384 CCCAGTCTAAGACT-AGATCGAACT-GAGAGTTACAACAGCAGGATCGACAGCACG-AGGGAGGG
** * * *
13511487 ACCGGGCCGATCCCCGACTTGTGCATTCTGCCTTTCCGACT-GACTGAGTGCCCGCAC-GTTCGT
446 ACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCC-ACTCGACTGAGTGCCCGCACACTT-AT
* * * * *
13511550 TTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTCA-TTCTCAG
509 TTCATGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGACTTCATTTC-CAG
* ** *
13511614 TCTAAGATCGGA-CAGGACCGAGGGTTACGGTAGCAGGACCAGTAGCGGGATCGACAGCACGCAG
573 TCTAAGATCGGATC-GGACCGAGGGTTACGGCAGCAGGACCAACAACGGGATCGACAGCACGCA-
* ** * *
13511678 GGGGGATCGGGCCGATCCCTGGCTTGCATATTCTGCCTCTCCGACC-AGCCTTTTTGGCCGGCTA
636 GAGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGA-CCTTTTCGGCCGGCTA
* * * *
13511742 AGTGA-CCACACACTCATTTCGTGGGTTGACTTAGGCATATAG-AATTCATTCCCAGTCTAAAAT
700 AG-CATCCACACACTCATTTCATAGGCTGACTTAGGCATA-AGAAATTCATTCCCAGTCTAAAAT
* * * ** ** * * *
13511805 TAGACCAGGCTGATTCCTGACTTGCGTATTCTGCCTCT-GAGGTTGGCTGAGCGCCTGCACGCCC
763 CAGACCAGACCGACCCCTGACTTGCACATTCTACCTCTCG-GGTCGGCTGAGCGCCTACACGCCC
* * * *
13511869 GTTTCATGAGTTGGCTT-AGGCATACGGAGTTCCTTCCATGTCTAAGCCCCAG-CTGAACCAAGG
827 GTTTCATGAGTTGGCTTCA-ACAAACGGAGTTCCTTCCATGCCTAAGCCCCAGTCAG-ACCAAGG
*
13511932 GTTGTGGCAGCGGGACTGACAGCACATAAAGGGGGATCG
890 GTTGTGGCAGCGAGACTGACAGCACATAAAGGGGGATCG
13511971 GGCCGACCCC
Statistics
Matches: 778, Mismatches: 133, Indels: 40
0.82 0.14 0.04
Matches are distributed among these distances:
993 114 0.15
994 175 0.22
995 480 0.62
996 8 0.01
997 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (991 bp):
CATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGG
ACCGACTGATCCCCGACTTGCGCATTCTGACACTCCGATCGACTGAGCTCCCAACACCCGTTTCA
TGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGC
AGCGGGACTGACAGCACACAGAGGGGGACCGAGCCGATCTCCGGCTTACACAGTATGCCTCTCCG
GCCAGCTCAACACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGACTAGATCGAACTGAGAGTTACAACAGCAGGATCGACAGCACGAGGGAGGGACCGGGCCGA
TCCCCGACTTACGCATTCTGCCTCTCCACTCGACTGAGTGCCCGCACACTTATTTCATGGGTAGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGACTTCATTTCCAGTCTAAGATCGGAT
CGGACCGAGGGTTACGGCAGCAGGACCAACAACGGGATCGACAGCACGCAGAGGGATCGGGCCGA
TCCCCAGCTTGCACATTCTGCCTCTCCGACCGACCTTTTCGGCCGGCTAAGCATCCACACACTCA
TTTCATAGGCTGACTTAGGCATAAGAAATTCATTCCCAGTCTAAAATCAGACCAGACCGACCCCT
GACTTGCACATTCTACCTCTCGGGTCGGCTGAGCGCCTACACGCCCGTTTCATGAGTTGGCTTCA
ACAAACGGAGTTCCTTCCATGCCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCGAGACTGACA
GCACATAAAGGGGGATCGAGCTGATCCTCGACTTGTGCACTATGCCTCTTCGGTTGGCCTCTCCG
GACCGGTGAGCGCTCA
Found at i:13512797 original size:26 final size:26
Alignment explanation
Indices: 13512768--13512820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13512758 GTTGACCAAG
*
13512768 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
*
13512794 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
13512820 G
1 G
13512821 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:13513960 original size:26 final size:26
Alignment explanation
Indices: 13513905--13513960 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
13513895 TGCGTTGGCT
* * *
13513905 TAAGCATACGGAGTTCATTCCATGTT
1 TAAGCATACGAAGTTCATTCCATATC
*
13513931 TAAGCGTACGAAGTTCATTCCCA-ATC
1 TAAGCATACGAAGTTCATT-CCATATC
13513957 TAAG
1 TAAG
13513961 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCATATC
Found at i:13514108 original size:26 final size:26
Alignment explanation
Indices: 13514078--13514130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13514068 GTTGACTTAG
13514078 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
13514104 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13514130 G
1 G
13514131 ATCGGACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13515899 original size:26 final size:26
Alignment explanation
Indices: 13515847--13515899 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13515837 GTTGGCTTAG
*
13515847 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13515873 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
13515899 G
1 G
13515900 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13516745 original size:158 final size:157
Alignment explanation
Indices: 13516292--13516752 Score: 489
Period size: 157 Copynumber: 2.9 Consensus size: 157
13516282 CAGATCGGAT
* * * * *
13516292 CGAGGGTTGCGACAGCAAGATCGACAGCATGCAGGGCGGACCAGGCCGATCCCCGACTTGCT-CA
1 CGAGGGTTGCG-CAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTG-TGCA
* * * * *
13516356 TTTTGCCTCTCCGACCGGCTGAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
64 TTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
*
13516421 TTCATTCCATGTCTAAGTGCCAGCTGAAC
129 TTCATTCCATGTCTAAGTGCCAGCCGAAC
* * * * * ** * *
13516450 CAAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGACCGAGCCGAT-CTCAGCTTGTGCAT
1 CGAGGGTTG-CGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGTGCAT
** * * * *
13516514 TATGCCTCTTTGACCGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTATGCATACGGAGT
65 TATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
*
13516579 TCATTCCATGTCTAAGATTG-GA-CCGAAC
130 TCATTCCATGTCTAAG--TGCCAGCCGAAC
* * *
13516607 CGAGGGTTGCAGCAGCAGGATCGACAGCATACAGGGGGGACCGGGTCGGTCCTCGGCTTGTGCAT
1 CGAGGGTTGC-GCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGTGCAT
* * * * * * *
13516672 TCTGCCTCTCCGGCCGGCTGAACACTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGT
65 TATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* *
13516737 TCACTCCATGTATAAG
130 TCATTCCATGTCTAAG
13516753 CATACGAAAT
Statistics
Matches: 243, Mismatches: 54, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.00
157 122 0.50
158 117 0.48
159 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
CGAGGGTTGCGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGTGCATT
ATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGTGCCAGCCGAAC
Found at i:13517948 original size:159 final size:157
Alignment explanation
Indices: 13517741--13518321 Score: 573
Period size: 159 Copynumber: 3.7 Consensus size: 157
13517731 AGGGGGATCG
* * * *
13517741 GGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTC-GGTGGAGCGCCCGCACACCCGTTTCGT
1 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCAGCT-GAACGCCCGCACGCCCGTTTCGT
* * * *
13517805 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTGACCAAGGGTCGCGGCA
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGGCA
* *
13517870 GCGGGACCGACCGCTCGTGGAAGGGGACCG
130 GCGGGACCGACAGC-CG-GGAAGGGGACCA
* * * * *
13517900 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTTGGTCGGCTCAACGCCCGCACGCTCGTTTCGTG
1 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCAGCTGAACGCCCGCACGCCCGTTTCGTG
* * ** * *
13517965 GGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGT
66 GGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCAGACCGAGGGTTGCGGC
* * * *
13518028 AGCAGGATCGATAGCAC-GAAAGGGGGGACCA
129 AGCGGGACCGACAGC-CGGGAA--GGGGACCA
* *
13518059 GGCCGATCCCCGACTTGTGCATTCTGCCTCTCCT-GTCAGCT-AAGCGCCCGCACGCCCGTTTCG
1 GGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CTGGTCAGCTGAA-CGCCCGCACGCCCGTTTCG
* * * *
13518122 CGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGC
64 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGGC
** * * * *
13518187 AATGGGACCGACAGCAGACAGAGGGGGATCA
129 AGCGGGACCGACAGCCG--GGAAGGGGACCA
* * * ** * * * *
13518218 GGTCGATCCCCAGCTTGTGCATTCTGCCTCT-TCGACCAGTTGAGCGCCCGTACGCTCGTTTCGT
1 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGTCAGCTGAACGCCCGCACGCCCGTTTCGT
*
13518282 GGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGC
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13518322 ATACGGAGTT
Statistics
Matches: 344, Mismatches: 63, Indels: 30
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.01
158 6 0.02
159 325 0.94
160 8 0.02
161 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCAGCTGAACGCCCGCACGCCCGTTTCGTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGGCAG
CGGGACCGACAGCCGGGAAGGGGACCA
Found at i:13518248 original size:318 final size:317
Alignment explanation
Indices: 13517659--13518320 Score: 821
Period size: 318 Copynumber: 2.1 Consensus size: 317
13517649 CCCAGACTAA
* * *
13517659 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGAACCGAGGGTTATAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTACAGCAGCAGGATCGACA
* * * * * *
13517724 GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGTGGAGCGCC
66 GCACGAAAGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGTCGCTGAAGCGCC
* **
13517789 CGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTG
131 CGCACACCCGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAA
* * * ** * *
13517854 ACCAAGGGTCGCGGCAGCGGGACCGACCGCTCGTGGAAGGGGACCGGGCCGATCCCCGGCTTGCG
196 ACCAAGGGTCGCGGCAACGGGACCGACAGCTAGCAGAAGGGGACCAGGCCGATCCCCAGCTTGCG
* ** * *
13517919 CATTATGCCTCTTTGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
261 CATTATGCCTCTTCGACCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
13517976 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGA-ACCGAGGGTTACAGCAGCAGGATCGAC
**
13518040 AGCACGAAAGGGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCT-GTCAGCT-AAG
65 AGCACGAAA-GGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCT-CTGGTC-GCTGAAG
*
13518103 CGCCCGCACGCCCGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
127 CGCCCGCACACCCGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * * *
13518168 CCAAACCGAGGGTTGTGGCAATGGGACCGACAGC-AGACAGAGGGGGATCAGGTCGATCCCCAGC
192 CCAAACCAAGGGTCGCGGCAACGGGACCGACAGCTAG-CAGAAGGGGACCAGGCCGATCCCCAGC
* * * * * * *
13518232 TTGTGCATTCTGCCTCTTCGACCAGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
256 TTGCGCATTATGCCTCTTCGACCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13518294 GTATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
13518321 CATACGGAGT
Statistics
Matches: 293, Mismatches: 46, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
316 1 0.00
317 65 0.22
318 223 0.76
319 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTACAGCAGCAGGATCGACA
GCACGAAAGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGTCGCTGAAGCGCC
CGCACACCCGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAA
ACCAAGGGTCGCGGCAACGGGACCGACAGCTAGCAGAAGGGGACCAGGCCGATCCCCAGCTTGCG
CATTATGCCTCTTCGACCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13518325 original size:26 final size:26
Alignment explanation
Indices: 13518296--13518346 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13518286 TGGCTTAGGT
13518296 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
*
13518322 ATACGGAGTTCATTCCCTGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
13518347 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGC
Found at i:13518920 original size:26 final size:26
Alignment explanation
Indices: 13518884--13518936 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13518874 GTTGACTTAG
**
13518884 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13518910 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13518936 G
1 G
13518937 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13519401 original size:159 final size:156
Alignment explanation
Indices: 13518910--13519401 Score: 488
Period size: 158 Copynumber: 3.1 Consensus size: 156
13518900 CTTAGTCTAA
* * * *
13518910 GCATATGGAGTTCATCCCCAGTCTAAGATCAGACCAGCCCGAGGGTTACGGTC-GCAGGATCGAC
1 GCATATGGAGTTCATTCCCAGTATAAGATCAGA-CAGACCGAGGGTTGCGG-CAGCAGGATCGAC
* * * * *
13518974 AGCACACAGTGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCGC
64 AGCACGCAGAGGGGACCGGGCCGATCC-CCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
13519039 CCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * *
13519068 GCATAGGGAGTTCATT-CCA-TATCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATATGGAGTTCATTCCCAGTA--TAAG-ATCAGACAGACCGAGGGTTGCGGCAGCAGGATC-G
* * * * * * *
13519130 GCAGCACGCAAAAGGGGACCGGGTCGATCCCCGGTTGTGCATTATGCCTCTCCGGCCGGCTGAGC
62 ACAGCACGC-AGAGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
** *
13519195 GCCCGCACGCTCATTTTGTGGGTTGACTTAG
126 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
** * * *
13519226 GCATACAGAGTTCATTCCCAGTATAAGATCAGACTGGACCGGGGGTTGCAGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTATAAGATCAGAC-AGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
13519291 GCACGCAGGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCACTCCGATCAGCTGAACGC
65 GCACGCA-GAGGGGACCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
13519356 CCACACGGTCATTTCACGGGTTGGCTTAG
128 CCGCACGCTCATTTCATGGGTTGGCTTAG
13519385 GCATATGGAGTTCATTC
1 GCATATGGAGTTCATTC
13519402 TAAGTCTAAG
Statistics
Matches: 264, Mismatches: 58, Indels: 23
0.77 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 10 0.04
158 163 0.62
159 88 0.33
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCCAGTATAAGATCAGACAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGAGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCATTTCATGGGTTGGCTTAG
Found at i:13519414 original size:26 final size:26
Alignment explanation
Indices: 13519385--13519437 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13519375 GTTGGCTTAG
* *
13519385 GCATATGGAGTTCATTCTA-AGTCTAA
1 GCATATAGAGTTAATTC-ACAGTCTAA
13519411 GCATATAGAGTTAATTCACAGTCTAA
1 GCATATAGAGTTAATTCACAGTCTAA
13519437 G
1 G
13519438 ATCTGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTAATTCACAGTCTAA
Found at i:13519775 original size:26 final size:25
Alignment explanation
Indices: 13519739--13519790 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
13519729 TTTGGCTTAG
13519739 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCA-GTCTAA
13519765 GCATATGGAGTTCATTCCAGTCTAA
1 GCATATGGAGTTCATTCCAGTCTAA
13519790 G
1 G
13519791 ATCGAGCCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
GCATATGGAGTTCATTCCAGTCTAA
Found at i:13519868 original size:354 final size:349
Alignment explanation
Indices: 13519129--13520374 Score: 1038
Period size: 354 Copynumber: 3.5 Consensus size: 349
13519119 CAGCGGGACT
** * * * * * * *
13519129 GGCAGCACGCAAAAGGGGACCGGGTCGATCCCCG-GTTGTGCATTATGCCTCTCCGGCCGGCTGA
1 GGCAGCACGC-AGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTTCGGCCGGCTGA
* * * * ** * **
13519193 GCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTATAAG-ATC
65 GCGCCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCC
* * * ** * * * * * * *
13519256 AGACTGGACCGGGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGGACCAGGCCGATCCCCG
129 AG-C-CGACTGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCA
* * ** * ** * * **
13519321 ACTTGCGCATTCTGCCACTCCGATC-AGCTGAACGCCCACACGGTCATTTCACGGGTTGGCTTAG
192 ACTTGCGCATTATGCCTCTCCGGCCGA-TTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
13519385 GCATATGGAGTTCATTCTAAGTCTAAGCATATAGAGTTAATTCACAGTCTAAGATCTGACTGGAC
256 GCATATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC-CAGTCTAAGATC-GACTGGAC
* * * ** *
13519450 CAAGGGTTGCGATAGCAAGACCAGTAGTAGGATC
319 C-AGGGTTGCG-GAG-TAGTCCAACAGCAGGATC
* * * *
13519484 GACAGCACGCAGGGGGGACCGAGCCGATCCTCGACTTGCACATTCTACCTCTTCGGCCGGCTAAG
1 GGCAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTTCGGCCGGCTGAG
* * *
13519549 CGCCCACACGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
66 CGCCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* *
13519614 CCAGACTGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGA-GGGGACCGGGCCGATCCCCAACT
131 CC-GACTGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCAACT
* * *
13519678 TGGGCTTTATGCCTCTCCGGCCGATTGAGTGCCCGCACGCTCA-TTCTGTGGTTTGGCTTAGGCA
195 TGCGCATTATGCCTCTCCGGCCGATTGAGTGCCCGCACGCTCATTTC-GTGGGTTGGCTTAGGCA
**
13519742 TATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATCGAGCCAGACCGAG
259 TATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATCGA-CTGGACC-AG
*
13519807 GGTTGCGGCAGTAGGTCCAACAGCAGGATT
322 GGTTGCGG-AGTA-GTCCAACAGCAGGATC
** * * * ** *
13519837 GGCAGCACGCAGAGGGGGATAGGGTCGATCCTC-AGCTTGCGCATTCTGCCTCTCCGATCGGTTG
1 GGCAGCACGCAG-GGGGGACCGGGCCGATCCTCGA-CTTGCGCATTCTACCTCTTCGGCCGGCTG
* * * * * * **
13519901 AGCACCCGTACGCTCATTTCGTGGGTTGGCTTGGGCATACGGAGTTTGTTCCATGTCTAAGCCCC
64 AGCGCCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* *
13519966 AGCCGAACAGAGGGTTGTGGTAGCAGGACCGGCGACGGGATCGGCAACATGCAGAGGGGGACCGG
129 AGCCG-ACTGAGGGTTGTGGTAGCGGGA-C--CGAC---A---GC-AC--GCAGAGGGGGACCGG
* *** *
13520031 GCTAATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGTTGAGTGCCCGCACGCTCATTTCGTGG
181 GCCAATCCCCAACTTGCGCATTATGCCTCTCCGGCCGATTGAGTGCCCGCACGCTCATTTCGTGG
* * * * *
13520096 GTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATATGAAGTTCATTCCCAATCTAAGA
246 GTTGGCTTAGGCATATGGAGTTCATTCCAT-GTCTAAGCATATGGAGTTCATT-CCAGTCTAAGA
* *
13520160 TCAAACTGGACC---G--G-GG-GT--TCCGACAGCAGGATC
309 TC-GACTGGACCAGGGTTGCGGAGTAGTCCAACAGCAGGATC
* * * * * *
13520193 AGCAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTACCTC-TCTGGCTGGCTGA
1 GGCAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTTC-GGCCGGCTGA
* *
13520257 GCGCCCGCACACCCATTTCG-TGGGTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCGCCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-
* * * * *
13520321 ATCGGA-TCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACCGGGC
129 AGCCGACT-GAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGC
13520375 TGGTCCCCGA
Statistics
Matches: 717, Mismatches: 141, Indels: 79
0.77 0.15 0.08
Matches are distributed among these distances:
342 16 0.02
344 2 0.00
345 2 0.00
348 1 0.00
351 3 0.00
352 3 0.00
353 56 0.08
354 293 0.41
355 167 0.23
356 25 0.03
357 4 0.01
359 2 0.00
360 1 0.00
361 2 0.00
362 1 0.00
363 2 0.00
364 3 0.00
366 9 0.01
367 104 0.15
368 20 0.03
369 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (349 bp):
GGCAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTTCGGCCGGCTGAG
CGCCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
CCGACTGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCAACTT
GCGCATTATGCCTCTCCGGCCGATTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
TGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATCGACTGGACCAGGGTT
GCGGAGTAGTCCAACAGCAGGATC
Found at i:13526243 original size:26 final size:26
Alignment explanation
Indices: 13526214--13526266 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13526204 GTTGGCTTAG
*
13526214 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
13526240 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
13526266 G
1 G
13526267 ATCTGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:13526577 original size:171 final size:171
Alignment explanation
Indices: 13526315--13526779 Score: 512
Period size: 171 Copynumber: 2.7 Consensus size: 171
13526305 GTAGGATTGA
* * * ** * *
13526315 CAGCACGCAG-GGGGGACCGAGCCAAT-CCCTAGCTTGCAC-ATTCTACCTCTCCGATCGGCTAA
1 CAGCACGCAGAGGGGGACCGAGCCAATCCCCGA-CTTGCACAATAC-GCCTCTCCGGCCGGTTGA
** *
13526377 GCGCCCGCACGCTCGTTTTGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
64 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
*
13526442 GCCGGGACCGAGGGTTGTGGCAGCAGGACCGGCAGC-GGATC-G
129 G-CGGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCAG
* * * * * * * * * *
13526484 ATAGCACGTAGAGGGGGACCGGGCCGATCCTCGACTTGCGC-ATTCTGCCTTTCTGGTCGGTTGA
1 -CAGCACGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACAATAC-GCCTCTCCGGCCGGTTGA
* * * *
13526548 GCGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTATAAGCCCCA
64 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
** *
13526613 GTTGGACCGAGGGTTGTGGCAGCAGGACCGATAGCGGGATCAG
129 GCGGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCAG
* *
13526656 CAGCACGCAGAGGGGGACCGAGCTAATCCCCGACTTTCACAATACGCCTCTCCGGCCGGTTGAGC
1 CAGCACGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACAATACGCCTCTCCGGCCGGTTGAGC
* * * * *
13526721 ACCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
66 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
13526780 ATACGGAGTT
Statistics
Matches: 244, Mismatches: 45, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
170 38 0.16
171 196 0.80
172 10 0.04
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (171 bp):
CAGCACGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACAATACGCCTCTCCGGCCGGTTGAGC
GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
GGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCAG
Found at i:13526782 original size:26 final size:26
Alignment explanation
Indices: 13526752--13526804 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13526742 GTTGACTTAG
13526752 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13526778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13526804 G
1 G
13526805 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13527282 original size:26 final size:26
Alignment explanation
Indices: 13527252--13527304 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13527242 GTTGGCTTAG
13527252 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13527278 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13527304 G
1 G
13527305 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13528005 original size:26 final size:26
Alignment explanation
Indices: 13527975--13528027 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13527965 GTTGAAATAG
13527975 GCATACGAAGTTCATCT-CCAGTCTAA
1 GCATACGAAGTTC-TCTCCCAGTCTAA
* * *
13528001 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCTCTCCCAGTCTAA
13528027 G
1 G
13528028 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCTCTCCCAGTCTAA
Found at i:13529483 original size:159 final size:158
Alignment explanation
Indices: 13529106--13529600 Score: 480
Period size: 159 Copynumber: 3.1 Consensus size: 158
13529096 GAGCATATAT
* * * * *
13529106 AGTTCA-TCCCTAGTCTAAGATCAGACCAGACTGGGGGTTGCGACAGTAGGATTGACAGCACGCA
1 AGTTCATTCCC-AGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATTGACAGCACGCA
* * * **
13529170 GA-GGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTATCCGACCGACTGAGTGCTCGCACG
65 GAGGGGGACCGAGCAGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCG-CTGAGCACTCGCACG
* * * *
13529234 CCCGTTTCGTGGGTTGGCTTAGGCATAGGG
129 CTCATTTCGTGGGTTGACTTAGGCATACGG
** * * * ** ** *
13529264 AGTTCATTCCACA-TCTAAGCCGCAG-TCGGACCGAGGGTTGTGGCAGCGGGACAGGTAGCACGT
1 AGTTCATTCC-CAGTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGGATTGACAGCACGC
* * * * * * * * *
13529327 AAAGGGGGACCGAGCAGATCCCCGGCTTGCGTATTATGCCTCTACGACCAGCTCAACACCCGAAC
64 AGAGGGGGACCGAGCAGATCCCCGGCTTGTGCATTCTGCCTCTCCGACC-GCTGAGCACTCGCAC
*
13529392 ACTCATTTCGTGGGTTGACTTAGGCATACGG
128 GCTCATTTCGTGGGTTGACTTAGGCATACGG
* *
13529423 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGCATTGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATTGACAGCACGCAG
* * * * * *
13529488 GGGGGGAATCGGGCTGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCACTCGCACG
66 AGGGGG-ACCGAGCAGATCCCCGGCTTGTGCATTCTGCCTCTCCGACC-GCTGAGCACTCGCACG
*
13529553 CTCATTTCGTGGGTTGGA-TTAAGCATACGG
129 CTCATTTCGTGGGTT-GACTTAGGCATACGG
13529583 AGTTCATT-CCATGTCTAA
1 AGTTCATTCCCA-GTCTAA
13529601 CCATACGGAG
Statistics
Matches: 263, Mismatches: 64, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
158 44 0.17
159 132 0.50
160 85 0.32
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATTGACAGCACGCAG
AGGGGGACCGAGCAGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGCTGAGCACTCGCACGCT
CATTTCGTGGGTTGACTTAGGCATACGG
Found at i:13534881 original size:26 final size:26
Alignment explanation
Indices: 13534829--13534881 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13534819 GTTGGCTTAG
* *
13534829 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATATCTAA
13534855 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13534881 G
1 G
13534882 AATTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13535577 original size:26 final size:26
Alignment explanation
Indices: 13535548--13535600 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13535538 GTTGACTTAG
*
13535548 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
*
13535574 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
13535600 G
1 G
13535601 AGCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:13535970 original size:159 final size:158
Alignment explanation
Indices: 13535581--13536004 Score: 440
Period size: 159 Copynumber: 2.7 Consensus size: 158
13535571 TAAGCATACG
* * * *
13535581 GAGTTCATTCCCAGTATAAGAGCAGACCAGACCGAGGGTTGCGGCAGTAAGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGAGCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGTA
* * * * * * * * *
13535646 AGGGGGACCGAGCTGATCCTTGGCTTGCACATTCTGCCTCTCCGGCCGACTCAGTGCCCGCACGC
66 GGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTACGACCGACTCAGAGCCCGAACGC
* **
13535711 CCATTTCATGGGTTGGCTTAGGCATAGG
131 CCATTTCATGGGTTGACTTAGGCATAAA
* ** * * * ** *
13535739 GAGTTCATT-CCATGTCTATG-GCCCATCTGAACCCAGGGTTGTGGTAGCGGGACCGACAGCA-G
1 GAGTTCATTCCCA-GTCTAAGAGCAGACCAG-ACCGAGGGTTGTGGTAGTAGGATCGACAGCACG
* * * * *
13535801 ATAGAAGGGGACCGGGCCGGTCCTCGGCTTGTGCATTATGCCTCTACGACCGGCTCAGAGCCCGA
64 -TAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTACGACCGACTCAGAGCCCGA
** * * *
13535866 ACGTTCGTTTCGTGGGTTGACTTATGCATAAA
127 ACGCCCATTTCATGGGTTGACTTAGGCATAAA
* *
13535898 GAGTTCAGTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGC
1 GAGTTCA-TTCCCAGTCTAAGAGCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGT
*
13535963 AGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCT
65 AGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCT
13536005 CCAACCGCTG
Statistics
Matches: 207, Mismatches: 51, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 9 0.04
158 40 0.19
159 113 0.55
160 37 0.18
161 8 0.04
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGAGCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGTA
GGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTACGACCGACTCAGAGCCCGAACGC
CCATTTCATGGGTTGACTTAGGCATAAA
Found at i:13536084 original size:26 final size:26
Alignment explanation
Indices: 13536054--13536107 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13536044 GGTTGGCTCC
13536054 AGCATACGAAGTTCATTC-CATGTCTA
1 AGCATACGAAGTTCATTCACA-GTCTA
*
13536080 AGCATACGGAGTTCATTCACAGTCTA
1 AGCATACGAAGTTCATTCACAGTCTA
13536106 AG
1 AG
13536108 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCACAGTCTA
Found at i:13536635 original size:26 final size:26
Alignment explanation
Indices: 13536605--13536657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13536595 GTTGGCTTAG
* **
13536605 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13536631 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13536657 G
1 G
13536658 AGTTTGACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13537843 original size:157 final size:160
Alignment explanation
Indices: 13537391--13537855 Score: 473
Period size: 159 Copynumber: 2.9 Consensus size: 160
13537381 GGTTGGACCA
** * ** * *
13537391 GACCGAGGGTTGCAGCAGTAGGATCGGCAGCACGCA-ATGGGGATCGGCCCGATCCCCAGCTTGG
1 GACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGA-GGGGATCGGGTCGATCCCCGGCTTGC
* * * * *
13537455 GCATTCTGCCTCTCCGGTTGGCTGAGCATCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATA-G
65 GCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
13537519 AGAGTTCATT-CCATGTCTAAGCCCAAGCTG
130 AGAGTTCATTCCCATATCTAAGACCAAGCCG
* * ***
13537549 GACTGAGGGTTGTGGCAAT-GGCATCGACAGCACGCAGAAAAAGATCGGGTCGATCCCCGGCTTG
1 GACCGAGGGTTGTGGCAGTAGG-ATCGACAGCACGCAG-AGGGGATCGGGTCGATCCCCGGCTTG
* * * * * * * *
13537613 CGCATTGTGGCTCTTCGGCCGGCTCAACGCCCGTC-CGCTCGTTTCGTGGGTTGACTTAGGCATA
64 CGCATTCTGCCTCTTCGGTCGGCTGAGCACCCG-CACGCTCGTTTCATGGGTTGGCTTAGGCATA
* *
13537677 C-AGAGTTCATTCCCA-ATCTAAGATCAGGCCG
128 CGAGAGTTCATTCCCATATCTAAGACCAAGCCG
* * * * *
13537708 GACCAAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCG-TCCCTGGCTTGTG
1 GACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGATCGGGTCGATCCCCGGCTTGCG
* *
13537772 CATTCTGCCTCTTCGGTCAGCTGAGCACCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGA
66 CATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGA
* *
13537837 -AATTCATT-CCATGTCTAAG
131 GAGTTCATTCCCATATCTAAG
13537856 CGTACAGAGT
Statistics
Matches: 245, Mismatches: 52, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.02
157 77 0.31
158 38 0.16
159 119 0.49
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
GACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGATCGGGTCGATCCCCGGCTTGCG
CATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGA
GAGTTCATTCCCATATCTAAGACCAAGCCG
Found at i:13539225 original size:159 final size:158
Alignment explanation
Indices: 13538976--13539267 Score: 424
Period size: 159 Copynumber: 1.8 Consensus size: 158
13538966 GGGTTGCGAC
* **
13538976 AGCAGGATTGGCAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTTGG
1 AGCAGGATCGGCAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGG
* * * *
13539041 CCGGCTGAGCAGTCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCT
66 CCGGCTGAGCAGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
13539106 AAGACGTAGTCAGACCAAGGGTTGTGGT
131 AAGACGTAGTCAGACCAAGGGTTGTGGT
* * * * *
13539134 AGCAGGATCGGCAGCACGTAGAGGGGGACCGGGTTGATCCCCGGCTTGTGCATTTTGCCTCTCCG
1 AGCAGGATCGGCAGCACGCAGA-GGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCG
* * *
13539199 GCCGGCTGAG-TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
65 GCCGGCTGAGCAG-CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
13539263 CTAAG
129 CTAAG
13539268 CATACGGAGT
Statistics
Matches: 117, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
158 21 0.18
159 96 0.82
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (158 bp):
AGCAGGATCGGCAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGG
CCGGCTGAGCAGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGACGTAGTCAGACCAAGGGTTGTGGT
Found at i:13539277 original size:26 final size:26
Alignment explanation
Indices: 13539241--13539293 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13539231 GTTGGCTTAG
13539241 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13539267 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13539293 G
1 G
13539294 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13540546 original size:26 final size:26
Alignment explanation
Indices: 13540510--13540562 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13540500 GTTGACTTAG
13540510 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCACT-CCCAGTCTAA
*
13540536 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
13540562 G
1 G
13540563 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:13540563 original size:196 final size:197
Alignment explanation
Indices: 13540210--13540566 Score: 502
Period size: 196 Copynumber: 1.8 Consensus size: 197
13540200 TTACGGTAGC
* * * **
13540210 AGGATTGACAGCACGTAGGGGGGGACCAGGCGGGTCCCCAACTTACGCATTCTGCATCTCTGGTC
1 AGGATTGACAGCACGTAGAGGGGGACCAGGCGGATCCCCAACTTACGCATACTGCATCTCCAGTC
* * * *
13540275 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
66 AGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
* *
13540340 GCATACGTAGTTCATTCCCAGTCTAAGATCAGTTCGGATCGAGGCTTGCGGCAACAGGACCAGCA
131 GCATACGGAGTTCACTCCCAGTCTAAGATCAGTTCGGATCGAGGCTTGCGGCAACAGGACCAGCA
13540405 GT
196 GT
* ** * * * *
13540407 AGGATTGGCAGCACGTA-AGGGGGACTGGGCTGATCCCCGACTTATGCATACTGCCTCTCCAGTC
1 AGGATTGACAGCACGTAGAGGGGGACCAGGCGGATCCCCAACTTACGCATACTGCATCTCCAGTC
* *
13540471 AGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
66 AGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTA
*
13540535 AGCATACGGAGTTCACTCCTAGTCTAAGATCA
130 AGCATACGGAGTTCACTCCCAGTCTAAGATCA
13540567 AACCAGACTG
Statistics
Matches: 138, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
196 119 0.86
197 19 0.14
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (197 bp):
AGGATTGACAGCACGTAGAGGGGGACCAGGCGGATCCCCAACTTACGCATACTGCATCTCCAGTC
AGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
GCATACGGAGTTCACTCCCAGTCTAAGATCAGTTCGGATCGAGGCTTGCGGCAACAGGACCAGCA
GT
Found at i:13541773 original size:197 final size:197
Alignment explanation
Indices: 13541432--13541786 Score: 457
Period size: 197 Copynumber: 1.8 Consensus size: 197
13541422 GGGATCGAGC
* ** *
13541432 CGATCCCCGACTTGCACATTCTGCCTCTCTGACCGGCTGAAGGCCCGTACGCTCCTTTCGTGGGT
1 CGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAAGGCCCACACGCTCCTTTCATGGGT
* * * * *
13541497 TAGCCTAAGCATACAGAGTTCATTCCATGTCAAAGCATATGGAGTTCATTCCAAGTCTATGATCA
66 TAGCCTAAGCATACAGAGTTCATCCCATGTCAAAGCAAATGAAGGTCATTCCAAGTCTAAGATCA
* ** * *
13541562 GACCGGATCGAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCAGCAGCACGTAGGGGAGGACCAG
131 AACCAAACCGAGGGTTGTGATAGCAGGACCAGCAGCGGGATCAGCAGCACGTAGGGGAGGACCAG
13541627 GT
196 GT
* *
13541629 CGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCTG-AGCGCCCACACGCTCGTTTCATGGG
1 CGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAAG-GCCCACACGCTCCTTTCATGGG
* * * *
13541693 TT-GACTTAGGCATAC-GAAGTTCATCCCCA-GTCTAAGCAAATGAAGGTCATTCCCAGTCTAAG
65 TTAG-CCTAAGCATACAG-AGTTCAT-CCCATGTCAAAGCAAATGAAGGTCATTCCAAGTCTAAG
*
13541755 ATCAAACCAAACCGAGGGTTGTGATAGTAGGA
127 ATCAAACCAAACCGAGGGTTGTGATAGCAGGA
13541787 TCGACAGCAC
Statistics
Matches: 133, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
196 4 0.03
197 126 0.95
198 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (197 bp):
CGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAAGGCCCACACGCTCCTTTCATGGGT
TAGCCTAAGCATACAGAGTTCATCCCATGTCAAAGCAAATGAAGGTCATTCCAAGTCTAAGATCA
AACCAAACCGAGGGTTGTGATAGCAGGACCAGCAGCGGGATCAGCAGCACGTAGGGGAGGACCAG
GT
Found at i:13542815 original size:26 final size:26
Alignment explanation
Indices: 13542779--13542831 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13542769 GTTGACTTAG
*
13542779 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
13542805 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
13542831 G
1 G
13542832 ATGAACTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:13543334 original size:170 final size:170
Alignment explanation
Indices: 13543044--13543471 Score: 452
Period size: 170 Copynumber: 2.5 Consensus size: 170
13543034 AGGGGGATCG
* * * ** * *
13543044 GGCTTGCGCATTATGCCTCTCCAGTCAGCTT-AGTGCCCGCACACTCGTTTCATGGGTTAACTTA
1 GGCTTGCGCATTATGCCTCTTC-G-CCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
* * * *
13543108 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGTGGGTTTCGGTAGCAGGACCAGC
64 GGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTTCGGTAGCAAGACCAGC
* * *
13543173 AGTAAGATCGACAGCACGTA-AGGGGGACCGGGTTGATCCCC
129 AGCAAGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCC
* *
13543214 GGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
1 GGCTTGCGCATTATGCCTCTTCG-CCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
13543279 GCATACAGAGTTCATT-TCATGTCTAAGCCCCA-TCCGGACCGAGGGTTGT-GGTAGCAAGACCG
65 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTT-TCGGTAGCAAGACCA
* **
13543341 GCAGCGAGATCGACAGCACGCAGAGGGGGATTGGGCTGATCCCC
127 GCAGCAAGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCC
* * * ** * * *
13543385 GGCTTGTGCATTATGCCTCTTTGTCGGTTGAGCGGCCGCATGCTCGCTTCGTGGGTTGACTTAGG
1 GGCTTGCGCATTATGCCTCTTCGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
* *
13543450 CATATGGAGTTCATCCCCAGTC
66 CATACGGAGTTCATTCCCAGTC
13543472 AAAGCATACA
Statistics
Matches: 212, Mismatches: 40, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
169 7 0.03
170 162 0.76
171 43 0.20
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (170 bp):
GGCTTGCGCATTATGCCTCTTCGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTTCGGTAGCAAGACCAGCAG
CAAGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCC
Found at i:13543979 original size:26 final size:26
Alignment explanation
Indices: 13543949--13544001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13543939 GTTGGATTGG
**
13543949 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13543975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13544001 G
1 G
13544002 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13544182 original size:26 final size:26
Alignment explanation
Indices: 13544146--13544198 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13544136 GTTGACTTAG
13544146 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * *
13544172 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
13544198 G
1 G
13544199 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:13545255 original size:26 final size:26
Alignment explanation
Indices: 13545219--13545269 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13545209 TTGACTTAGG
*
13545219 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGAAGTTCATCCCCAGTCTAAC
**
13545245 CATACGAAGTTCATTTCCAGTCTAA
1 CATACGAAGTTCATCCCCAGTCTAA
13545270 GATCAGACAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAC
Found at i:13545729 original size:156 final size:156
Alignment explanation
Indices: 13545252--13545743 Score: 476
Period size: 159 Copynumber: 3.1 Consensus size: 156
13545242 AACCATACGA
* * *
13545252 AGTTCATTTCCA-GTCTAAGATCAGACAGGAGCGAGGGTTGTGACAGTAGAATCGACAGCACGCA
1 AGTTCA-TTCCATGTCTAAGATCAGACAGGACCGAGGGTTGTGGCAGTAGGATCGACAGCAC-CA
* * * * *
13545316 GAGGGGATCAGGCT-GATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACA
64 GGGGGGA-CCGGATCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACG
* * *
13545380 CCCGTTTCATGGGTTGGCTTAGGCATAGGG
128 CTCGTTTCGTGGGTTGGCTTAGGCATA-AG
** ** * * *
13545410 AGTTCATTCCATGTCTAAGCCCCAGTTA-GATCGAGGGTTGTGGCAGCAGGACCGACAGCACGCA
1 AGTTCATTCCATGTCTAAG-ATCAGACAGGACCGAGGGTTGTGGCAGTAGGATCGACAGCAC-CA
* * * ** * *
13545474 GAGGGGGATC-GAGCCGATCCCTGACTTGCGCATTAAGCCTCTCCGACCGGCTCAGCGCCCGCAC
64 G-GGGGGACCGGA-TCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACAC
* * * * *
13545538 GCTCATTTTGTGAGTTGACTTAGGCATACG
127 GCTCGTTTCGTGGGTTGGCTTAGGCATAAG
* * *
13545568 AAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCGATAGCA-CA
1 -AGTTCATT-CCATGTCTAAGATCAGACAGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACCA
* * * * * *
13545631 GGGGGGACCGGATCGGTCCCC-AGCTTACGTATTCTGCCTCTTCGACCGGTTGAGCACCCACACG
64 GGGGGGACCGGATCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACG
13545695 CTCGTTTCGTGGGTTGGCTTAGGCATATAG
128 CTCGTTTCGTGGGTTGGCTTAGGCATA-AG
13545725 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
13545744 CATAAAGAGT
Statistics
Matches: 266, Mismatches: 56, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
155 4 0.02
156 83 0.31
157 12 0.05
158 49 0.18
159 115 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCAGACAGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACCAGG
GGGGACCGGATCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTC
GTTTCGTGGGTTGGCTTAGGCATAAG
Found at i:13545753 original size:26 final size:26
Alignment explanation
Indices: 13545717--13545769 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13545707 GTTGGCTTAG
*
13545717 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATAAAGAGTTCATTCCCA-GTCTAA
13545743 GCATAAAGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
13545769 G
1 G
13545770 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTCTAA
Found at i:13546463 original size:26 final size:26
Alignment explanation
Indices: 13546427--13546479 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13546417 GTTGGCTTAG
13546427 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13546453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13546479 G
1 G
13546480 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13546872 original size:26 final size:26
Alignment explanation
Indices: 13546842--13546894 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13546832 GTTGGCTTTG
13546842 GCATACAAAGTTCATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
**
13546868 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
13546894 G
1 G
13546895 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:13547258 original size:26 final size:26
Alignment explanation
Indices: 13547222--13547274 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13547212 GTTGACTTAG
*
13547222 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13547248 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13547274 G
1 G
13547275 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13547566 original size:158 final size:155
Alignment explanation
Indices: 13547386--13547748 Score: 381
Period size: 156 Copynumber: 2.3 Consensus size: 155
13547376 CCCGCACACC
* * *
13547386 CATTTCGTGGGTTGGCTTAGGCATGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGG
1 CATTTCGTGGGTTGACTTAGGCAT-GGAGTTCATTCCA-GTCTAAGCACCAGACCGAATCGAGGG
* * *
13547450 TT-GTGGCAGGGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATG
64 TTACT-GCAGGAGGACCGACAGCACGC--AGGGGGACCGGGCCGATCCCCGACTTGCACATTATG
* *
13547514 CCTTTCCAACCAGCTCATCACCCGAACGCT
126 CCTCTCCAACCAGCTCAGCACCCGAACGCT
* **
13547544 CATTTCGTGGGTTGACTTAGGCAATGGAGTTCATTCCCAATCTAAG-ATTAGACCGAATCGAGGG
1 CATTTCGTGGGTTGACTTAGGC-ATGGAGTTCATT-CCAGTCTAAGCACCAGACCGAATCGAGGG
* * * * ** *
13547608 TTACTGTAGTAGGATCGACAGCACGCAGGGGGATCGGGCCGATCCTTGACTTGCACATTCTGCCT
64 TTACTGCAGGAGGACCGACAGCACGCAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCT
** * * * *
13547673 CTCTGACCGGTTGAGCACCCGTACGCT
129 CTCCAACCAGCTCAGCACCCGAACGCT
* *
13547700 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 CATTTCGTGGGTTGACTTAGGCAT--GGAGTTCAT-TCCAGTCTAAGCA
13547749 TACAGAGTTC
Statistics
Matches: 170, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
155 2 0.01
156 74 0.44
157 20 0.12
158 68 0.40
159 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
CATTTCGTGGGTTGACTTAGGCATGGAGTTCATTCCAGTCTAAGCACCAGACCGAATCGAGGGTT
ACTGCAGGAGGACCGACAGCACGCAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCT
CCAACCAGCTCAGCACCCGAACGCT
Found at i:13547749 original size:26 final size:26
Alignment explanation
Indices: 13547720--13547772 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13547710 GTTGACTTAG
* *
13547720 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13547746 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13547772 G
1 G
13547773 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13547905 original size:184 final size:183
Alignment explanation
Indices: 13547570--13548006 Score: 599
Period size: 184 Copynumber: 2.4 Consensus size: 183
13547560 TTAGGCAATG
* * * *
13547570 GAGTTCATTCCCAATCTAAGATTAGACCGAATCGAGGGTTACTGTAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGC-GTAGCAGGATCGACAGCACGCA
* * * * * * *
13547635 -GGGGGATCGGGCCGATCCTTGACTTGCACATTCTGCCTCTCTGACCGGTTGAGCACCCGTACGC
65 GGGGGGATCGCGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCGCACAC
13547699 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
130 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
* *
13547753 GAGTTCATTCCCAATCTAAGATC-GAACTGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGC
1 GAGTTCATTCCCAATCTAAGATCAG-ACCGAACCGAGGGTTGC-GTAGCAGGATCGACAGCACGC
* * *** * *
13547817 AGGGGGGATCGCGCTGATCCCTGGCTTGCACATTCTGCCTCTCCGGTTAGCTGAGCGCCTGCACA
64 AGGGGGGATCGCGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCGCACA
13547882 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
129 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
** * * *
13547937 GAGTTCATTCTTAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCG-TAGCAGGATCGACAGCACGCA
13548002 GGGGG
65 GGGGG
13548007 ACCAGGTCGA
Statistics
Matches: 222, Mismatches: 28, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
182 1 0.00
183 57 0.26
184 163 0.73
185 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (183 bp):
GAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGTAGCAGGATCGACAGCACGCAG
GGGGGATCGCGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCGCACACT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
Found at i:13548449 original size:26 final size:26
Alignment explanation
Indices: 13548413--13548465 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13548403 GTTGGCTTAG
13548413 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13548439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13548465 G
1 G
13548466 ATGGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13548852 original size:514 final size:507
Alignment explanation
Indices: 13547743--13549173 Score: 1547
Period size: 514 Copynumber: 2.8 Consensus size: 507
13547733 ATCCCCAGTC
* * * * *
13547743 TAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTGCAGTAGCAGGATCG
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCG
* * * * * *
13547808 ACAGCACGCAGGGGGGATCGCGCTGATCCCTGGCTTGCACATTCTGCCTCTCCGGTTAGCTGAGC
66 ACAGCACGCAGGGGGGACCGGGCCGATCTC-GGCTTGCACATTCTGCCTCT-CGGATGGCTGAGC
* * * * * *
13547873 GCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACA
129 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACG
** * * * *
13547937 GAGTTCATTCTTAGTCTAAGATCAGACCGAACCGA-GG--GT-T-G-CGACAGC--AGGATCGAC
193 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGTAGAGGACAGCAGAGGATCGAC
* *
13547994 AGCACACA-GGGGGACCAGGTCGAT-CCTCGGCTTACGTATTCTGCCTCTCCAATCGACTGAGCG
258 AGCACGCAGGGGGGACCGGGTCGATCCCT-GGCTTACGTATTCTGCCTCT-C---CGA-T---CG
* * *
13548057 ACTGAGCGCCCGTACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAG
314 ACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * * * *
13548122 CCCCAGCCGGATTGAAGGTTGTGGCAGCGGGACCGACAACACGCAGAGTGGGATTGGGCTGATCC
379 CCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACAGACAACACGCAAAGGGGGATTGGGCTGATCC
** * * * *
13548187 TTGGCTTGCGCATTATGCCTTTTCGGTCAGTTCAGCGCCCGCACGCTCATTTTGTGGGTTAACT
444 TCAGCTTGCGAATTATGCCTTTTCGGCCAGTTCAACGCCCGCACGCTCATTTCGTGGGTTAACT
* * * * * * * * *
13548251 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGATTGTGATAGTAAGATCA
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCG
* * ** * * * *
13548316 ATAGCACGAAGAGGAAGACCGGGCCGATCATCGGCTTACGCATTCTGCCTCTCTGGCTGGTTGAG
66 ACAGCACGCAG-GGGGGACCGGGCCGATC-TCGGCTTGCACATTCTGCCTCTC-GGATGGCTGAG
13548381 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
128 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* *
13548446 GAGTTCATTCCCAGTCTAAGATGGGATCGGACCAAGGGTTGTGGTAGTAGGACTAGCAGTAGGAT
193 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGT-GTAG-AGGAC-AGCAG-AGGAT
** *
13548511 CGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTACGCGTTCTGCCTCTCCGATCGAATGA
254 CGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTACGTATTCTGCCTCTCCGATCGACTGA
* *
13548576 GCGCCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
319 GCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * *
13548641 GTCGGATCGAGGGTTGTGGCAGCTGGACAGACAGCATGTAAAGGGGGATTGGG-TCGATCCTCAG
384 GTCGGATCGAGGGTTGTGGCAGCGGGACAGACAACACGCAAAGGGGGATTGGGCT-GATCCTCAG
* * * * *
13548705 CTTGCGAATTATG-CTTCTTCGGCCCGTTCAACGCTCGCACGGTCGTTTCGTGGGTTTACT
448 CTTGCGAATTATGCCTT-TTCGGCCAGTTCAACGCCCGCACGCTCATTTCGTGGGTTAACT
* * * *
13548765 TAAGCATACAGAGTTCATTCCCAGTATAAAGATTGGACCAAACCGAGGGTTGCGGTAGCAGGATT
1 TAAGCATACAGAGTTCATTCCCAGTCT-AAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATC
* * * * * *
13548830 GACAGCATGCAGGGGGGACCGGGTCGATCCTCGACTTGCACATTCTGGCTCTCCGATCGACTGAG
65 GACAGCACGCAGGGGGGACCGGGCCGAT-CTCGGCTTGCACATTCTGCCTCTCGGAT-GGCTGAG
* *
13548895 CACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACATACG
128 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* ** *
13548960 AAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGAT
193 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTG-TAG-AGGA-CAGCAG-AGGAT
* * * * * * * * * ** *
13549025 TGGCAGCATGCAGAGGGGATCGAGCCGATCCCCGACTTGGGTATTCTGCCTCTCCGACCGACTGA
254 CGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTACGTATTCTGCCTCTCCGATCGACTGA
* * * * * * *
13549090 GCACCCCCAAGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
319 GCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
13549155 GTCGGATCGAGGGTTGTGG
384 GTCGGATCGAGGGTTGTGG
13549174 TAGTAAGATC
Statistics
Matches: 765, Mismatches: 133, Indels: 44
0.81 0.14 0.05
Matches are distributed among these distances:
508 64 0.08
509 121 0.16
510 3 0.00
512 2 0.00
513 7 0.01
514 466 0.61
515 39 0.05
517 4 0.01
518 6 0.01
521 17 0.02
522 33 0.04
523 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (507 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCG
ACAGCACGCAGGGGGGACCGGGCCGATCTCGGCTTGCACATTCTGCCTCTCGGATGGCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGTAGAGGACAGCAGAGGATCGACAGC
ACGCAGGGGGGACCGGGTCGATCCCTGGCTTACGTATTCTGCCTCTCCGATCGACTGAGCGCCCG
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAT
CGAGGGTTGTGGCAGCGGGACAGACAACACGCAAAGGGGGATTGGGCTGATCCTCAGCTTGCGAA
TTATGCCTTTTCGGCCAGTTCAACGCCCGCACGCTCATTTCGTGGGTTAACT
Found at i:13548957 original size:26 final size:26
Alignment explanation
Indices: 13548928--13548978 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13548918 TTGGCTTAGG
*
13548928 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGAAGTTCATTCCCA-GTCTAAA
13548954 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
13548979 GATCGGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:13549323 original size:26 final size:26
Alignment explanation
Indices: 13549294--13549346 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13549284 GTTGACTTAG
*
13549294 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCATAGTCTAA
13549320 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCATAGTCTAA
13549346 G
1 G
13549347 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCATAGTCTAA
Found at i:13550034 original size:317 final size:316
Alignment explanation
Indices: 13549320--13550139 Score: 982
Period size: 317 Copynumber: 2.6 Consensus size: 316
13549310 CCTAGTCTAA
** * ** * *
13549320 GCATACGGAGTTCATTCATAGTCTAAGATTAGACCGGATGGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATA
* * * * * *
13549385 GCACACAGGGGGGACCGGTTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGT-TGAGCAC
66 GCACATAAGGGGGACCGGTT-GATCCCCGACTTACGCATTCTGCCTCT-CTGACCGTCTGAGCAC
* * * * * *
13549449 CCGCACGCCTGTTTTGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGCCTAAGCCCCAGCCG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAG
** * ** * *
13549514 GACCGAGGGTTGTGGTAGTGGGACCGGTAGCATGCAGAGGGGGACCAGGCCAATCCCCGGCTTGT
194 GACCGAGGGTTGTGGTAGCCGGACCGGCAGCACACAGAGGGGGACCAGGCCAATCCCCAGCTTGC
* * * *
13549579 GCATTATTCCTCTCCGGCTAGCTTAGTGCTCGAACACTCATTTTGTGGGTTGACTTAG
259 GCATTATGCCTCTCCGGCTAGCTCAGCGCCCGAACACTCATTTTGTGGGTTGACTTAG
*
13549637 GCATACGGAGTTCATTCCCAGTCTAAAATC-GAACCGGACCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCAGGATCGAT
* * * *
13549701 AGCACGTAAGGGGGACCGGGTTGATCCTCGACTTACGCATTTTGCATCTCTGACCGTCTGAGCAC
65 AGCACATAAGGGGGACC-GGTTGATCCCCGACTTACGCATTCTGCCTCTCTGACCGTCTGAGCAC
* * *
13549766 CTGCACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAACAG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAG
* * * * * *
13549831 GATCGAGGGTTGTGG-AGCCGGACTGGCAGCACATAGAGGGGGATCGGGCCGATCCCCAGCTTGC
194 GACCGAGGGTTGTGGTAGCCGGACCGGCAGCACACAGAGGGGGACCAGGCCAATCCCCAGCTTGC
* * * * *
13549895 GCATTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
259 GCATTATGCCTCTCCGGCTAGCTCAGCGCCCGAACACTCATTTTGTGGGTTGACTTAG
* * * ** *
13549953 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCATGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATA
* * * * *
13550018 GCACATAAGAGGGGACCAGGCTGGTCCCCGGCTTACGCATTCTACCTCTCT-AGCCGACTGAGCA
66 GCACATAAG-GGGGACC-GGTTGATCCCCGACTTACGCATTCTGCCTCTCTGA-CCGTCTGAGCA
* * *
13550082 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13550140 ATACGGGGTT
Statistics
Matches: 425, Mismatches: 72, Indels: 12
0.83 0.14 0.02
Matches are distributed among these distances:
316 157 0.37
317 264 0.62
318 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATA
GCACATAAGGGGGACCGGTTGATCCCCGACTTACGCATTCTGCCTCTCTGACCGTCTGAGCACCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAGGA
CCGAGGGTTGTGGTAGCCGGACCGGCAGCACACAGAGGGGGACCAGGCCAATCCCCAGCTTGCGC
ATTATGCCTCTCCGGCTAGCTCAGCGCCCGAACACTCATTTTGTGGGTTGACTTAG
Found at i:13550102 original size:159 final size:157
Alignment explanation
Indices: 13549320--13550138 Score: 534
Period size: 158 Copynumber: 5.2 Consensus size: 157
13549310 CCTAGTCTAA
* * ** ** * *
13549320 GCATACGGAGTTCATT-CATAGTCTAAGATTAGACCGGATGGAGGGTTACGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTG-GAGCAGGATCGAT
* * * * * * * * **
13549384 AGCACA-CAGGGGGGACC-GGTTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGC
64 AGCACATAAGAGGGGACCGGGCT-GATCCCCGGCTTACGCATTATGCCTCT-CTGCCGACTGAGC
* *
13549447 ACCCGCACGC-CTGTTTTGTGGGTTGGCTTAG
127 ACCCGCACGCTC-GTTTCGTGGGTTGACTTAG
** * ** * ** * *
13549478 GCATTGGGAGTTCATTCCATGCCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGTGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGG-AGCAGGATCGAT
* * ** ** * * * * *
13549542 AG--CATGCAGAGGGGGACCAGGCCAATCCCCGGCTTGTGCATTATTCCTCTCCGGCTAGCTTAG
64 AGCACAT-AAGA-GGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGCCGA-CTGAG
** * * * * *
13549605 TGCTCGAACACTCATTTTGTGGGTTGACTTAG
126 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
13549637 GCATACGGAGTTCATTCCCA-GTCTAAAATC-GAACCGGACCGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ACCAGACCGAGGGTTGTG-GAGCAGGATCGA
* * * * * * *
13549700 TAGCACGTAAG-GGGGACCGGGTTGATCCTCGACTTACGCATTTTGCATCTCTGACCGTCTGAGC
63 TAGCACATAAGAGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTG-CCGACTGAGC
* * * *
13549764 ACCTGCACGCCCGTTTCGTAGGTTGGCTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * *
13549795 GCATAGGGAGTTCATTCCATATCTAAGCCCCA-A-CAGGATCGAGGGTTGTGGAGCCGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCA-GACCGAGGGTTGTGGAGCAGGATC-GA
* * * * * * * * *
13549857 CAGCACAT-AGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCTGGCTCAG
63 TAGCACATAAGA-GGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTC-TCTGCCGACTGAG
* *
13549921 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
126 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13549953 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCATGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGG-AGCAGGATCGAT
* * * *
13550017 AGCACATAAGAGGGGACCAGGCTGGTCCCCGGCTTACGCATTCTACCTCTCTAGCCGACTGAGCA
64 AGCACATAAGAGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCT-GCCGACTGAGCA
* *
13550082 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
13550112 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13550139 CATACGGGGT
Statistics
Matches: 492, Mismatches: 137, Indels: 63
0.71 0.20 0.09
Matches are distributed among these distances:
156 5 0.01
157 20 0.04
158 238 0.48
159 215 0.44
160 12 0.02
161 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGAGCAGGATCGATAG
CACATAAGAGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGCCGACTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13550141 original size:26 final size:26
Alignment explanation
Indices: 13550112--13550164 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13550102 GTTGGCTTAG
13550112 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13550138 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13550164 G
1 G
13550165 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13550697 original size:26 final size:26
Alignment explanation
Indices: 13550661--13550713 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13550651 GTTGGCTTAG
13550661 GCATACGGAGTTCACTC-CATGTCTAA
1 GCATACGGAGTTCACTCACA-GTCTAA
*
13550687 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCACTCACAGTCTAA
13550713 G
1 G
13550714 ATTTTGTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCACAGTCTAA
Found at i:13551701 original size:159 final size:158
Alignment explanation
Indices: 13551448--13551750 Score: 378
Period size: 159 Copynumber: 1.9 Consensus size: 158
13551438 GACTGAACCA
* ** * *
13551448 AGGGTTGTGGCAGTAGGATCGGCAGCACGTAGGGGGGACTAGGCTGATCCTTGGCTTGTGCATTC
1 AGGGTTGTGGCAGTAGGATCGGCAGCACGAAGGGGGGACTAGGCTGATCCCCGGCTTGCGCATTA
* * * * *
13551513 TGCCTCTCCGACCGATTGAGCGCCCGCACGC-C-TGTTTCATGGGTTGGCTTAGGCATAGGGAGT
66 TGCCTCTCCGACCGACTCAACGCCCGCACGCTCAT-TTTC-TGGGTTGACTTAGGCATACGGAGT
13551576 TCATT-CCATGTCTAAGCCCCACTCGTACCG
129 TCATTCCCA-GTCTAAGCCCCACTCGTACCG
* * * * * * *
13551606 AGGGTTGTGGTAGTGGGATCGGTAGTATGAAGAGGGTGACTGGGCTGATCCCCGGCTTGCGCATT
1 AGGGTTGTGGCAGTAGGATCGGCAGCACGAAG-GGGGGACTAGGCTGATCCCCGGCTTGCGCATT
* *
13551671 ATGCCTCTCCGACCGGCTCAACGCCTGCACGCTCATTTTCTGGGTTGACTTAGGCATACGGAGTT
65 ATGCCTCTCCGACCGACTCAACGCCCGCACGCTCATTTTCTGGGTTGACTTAGGCATACGGAGTT
13551736 CATTCCCAGTCTAAG
130 CATTCCCAGTCTAAG
13551751 ATTTTGAGCC
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
158 26 0.21
159 87 0.71
160 8 0.07
161 1 0.01
ACGTcount: A:0.17, C:0.25, G:0.31, T:0.26
Consensus pattern (158 bp):
AGGGTTGTGGCAGTAGGATCGGCAGCACGAAGGGGGGACTAGGCTGATCCCCGGCTTGCGCATTA
TGCCTCTCCGACCGACTCAACGCCCGCACGCTCATTTTCTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCCCCACTCGTACCG
Found at i:13552616 original size:26 final size:26
Alignment explanation
Indices: 13552580--13552632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13552570 GTTGGCGTAG
13552580 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13552606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13552632 G
1 G
13552633 ATCAGATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13553301 original size:159 final size:159
Alignment explanation
Indices: 13552937--13553461 Score: 494
Period size: 158 Copynumber: 3.3 Consensus size: 159
13552927 GCACCCGTAT
* * ***
13552937 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTTGA-CGGGACC
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGATC-GGACC
* * * * * * *
13553000 AAGGGTTGCGACAAACAGGATCCG-TAGCACGCAG-GGGGGATTGGGCCGATCCTCGACTTGCGC
64 GAGGGTTACGGC-AGCAGGA-CCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGC
* *
13553063 ATTCTGCC-CTCCGACCGGCTGAGTGCCTGCAC
127 ATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCAC
* * * * *
13553095 GC-CTGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-TCGGAT
1 GCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA--CCAGATCGGAC
* ** * * * *
13553157 TGAGGGTTGTGGCAGTAGGACCGGCAGCATGCAGAGGGCGATCGGGCCGATCCCCGACTTGCGCA
63 CGAGGGTTACGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCA
* * * *
13553222 TTATGCCTCTTCGGCCGGCTCAGCGCCTGTAC
128 TTCTGCCTCTCCGGCCGGCTGAGCGCCTGCAC
* * * * *
13553254 ACTCATTTCGTGGGTTGACTTATGCATACGGAGTACATTTCCA-GTCTAAGATCAGATCGGACCG
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGACCAGATCGGACCG
* * * * * *
13553318 AGGGTTACGGTAGCAGGATCGACAACACACA-AGGGGGATCGTGCCGATCCCCAACTTGCGCATT
65 AGGGTTACGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATT
* ** *
13553382 CTACCTCTCCGGCCTACTGAGCGCCCGCAC
130 CTGCCTCTCCGGCCGGCTGAGCGCCTGCAC
*
13553412 GCTCATTTCGTGGGTTGGGTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13553462 CATATGGATT
Statistics
Matches: 293, Mismatches: 61, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 23 0.08
158 178 0.61
159 82 0.28
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGGACCGA
GGGTTACGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTC
TGCCTCTCCGGCCGGCTGAGCGCCTGCAC
Found at i:13560098 original size:26 final size:26
Alignment explanation
Indices: 13560068--13560120 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13560058 GTTGACTTAG
13560068 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
13560094 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13560120 G
1 G
13560121 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13560405 original size:159 final size:160
Alignment explanation
Indices: 13560094--13560598 Score: 395
Period size: 159 Copynumber: 3.2 Consensus size: 160
13560084 CCCAGTCTAA
* * * * * *
13560094 GCATACGGAGTTTATTCCCA-GTCTAAG-ATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTGCGGCAGCAGGACCGA
* * *** * * * * * * * * *
13560157 CAGCACGC-AGGGGGGACCGGGCCAATCCCCAACTTGCGCATTTTGCCTCTCTGACCGG-TCGAG
65 CAGCACACAAGGAGGGATTAGGCCGATCCCCGACTTACACATTATACCTCTCCGATCGGCTC-AA
** * * *
13560220 CGCCCGCA-TGTCCGTTTCCTGGGTTGACTTAG
129 CGCCCGCACACT-CATTTCGTGAGTTGACTTAG
* * * * *
13560252 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGA-TCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACT-GAGGGTTGCGGCAGCAGGACCGA
* ** * *
13560315 TAGCACACAAAGG-GGGA-TAGGGCCGATCCCCGACTTGTACATTATGCCTCTCCG-GCTGGCTC
65 CAGCACAC-AAGGAGGGATTA-GGCCGATCCCCGACTTACACATTATACCTCTCCGATC-GGCTC
13560377 AACGCCCGCACACTCATTTCGTGAGTTGACTTAG
127 AACGCCCGCACACTCATTTCGTGAGTTGACTTAG
* * * *
13560411 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTGCGGCAGCAGGACCGA
** * * * * * * *
13560474 CAGCACACGGGGAGGGATTAGGTCGATCCGCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGC
65 CAGCACACAAGGAGGGATTAGGCCGATCCCCGACTTACACATTATACCTCTCCGATCGGCTCAAC
* * *
13560539 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
130 GCCCGCACACTCATTTCGTGAGTTGACTTAG
13560570 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13560599 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 54, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
157 3 0.01
158 59 0.21
159 200 0.72
160 14 0.05
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGCGGCAGCAGGACCGAC
AGCACACAAGGAGGGATTAGGCCGATCCCCGACTTACACATTATACCTCTCCGATCGGCTCAACG
CCCGCACACTCATTTCGTGAGTTGACTTAG
Found at i:13560606 original size:26 final size:26
Alignment explanation
Indices: 13560570--13560648 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
13560560 GTTGGCTTAG
13560570 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13560596 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
13560622 GCATACGGAGATCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
13560648 G
1 G
13560649 ATCAGACCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13561005 original size:26 final size:26
Alignment explanation
Indices: 13560975--13561027 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13560965 GTTGACTTAG
13560975 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
13561001 GCATAGGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13561027 G
1 G
13561028 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13561345 original size:158 final size:156
Alignment explanation
Indices: 13561001--13561503 Score: 507
Period size: 159 Copynumber: 3.2 Consensus size: 156
13560991 CCCAATCTAA
* ** * *
13561001 GCATAGGAAGTTCATTCCCAGTCTAAG-ATCAGACCAGGCCGAGGGTTGTGGCAGCAGGATGGGC
1 GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
13561065 AGCACGCAGGGGCGATCGAGCCAATCCCCGACTTGCGTATTCTGCCTCTTCGGCCT-ACTGAACG
65 AGCACGCAGGGGGGACCG-G-CTATCCCCGGCTTTCGCATTCTGCCTCTTCGG-CTGACTGAGCG
* * *
13561129 CCCTGCATGCCCGTTTCATGGGTTAGTTTAG
127 CCC-GCACGCCCGTTTCATGGGTTGGCTTAG
* * *
13561160 TCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGATCGGC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGGC
** * *
13561224 AGCACGCAGGGGGGACCAGGCTGATCCTTGGCTTTCGCATTCTACCT-TTCCGGCTGGCTGAGCG
65 AGCACGCAGGGGGGACC-GGCT-ATCCCCGGCTTTCGCATTCTGCCTCTT-CGGCTGACTGAGCG
*
13561288 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* *
13561318 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGGACCGGC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * *
13561382 AGCATGCAGAAGGGGACCGGGCCTATCCCCGGCTTGT-GCATTATGCCTCTTC-GATCGACTCAG
65 AGCACGCAG-GGGGGACC-GG-CTATCCCCGGCTT-TCGCATTCTGCCTCTTCGGCT-GACTGAG
* * * *
13561445 CGCCCGCACGCTCATTTCATGGGTTGACTTAT
125 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
*
13561477 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATAGGGAGTTCATTCCCAGTCTAAG
13561504 ATTGGACTGG
Statistics
Matches: 288, Mismatches: 44, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
158 100 0.35
159 176 0.61
160 12 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGGCTATCCCCGGCTTTCGCATTCTGCCTCTTCGGCTGACTGAGCGCCCG
CACGCCCGTTTCATGGGTTGGCTTAG
Found at i:13561501 original size:159 final size:156
Alignment explanation
Indices: 13561001--13561661 Score: 494
Period size: 159 Copynumber: 4.2 Consensus size: 156
13560991 CCCAATCTAA
* ** * *
13561001 GCATAGGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGGCCGAGGGTTGTGGCAGCAGGATGGG
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * *
13561064 CAGCACGCAGGGGCGATCGAGCCAATCCCCGACTTGCGTATTCTGCCTCTTCGGCCTACTGAACG
64 CAGCACGCAGGGG-GACCGGGCCTATCCCCGGCTTGTGCATTCTGCCTCTTC-GCCGACTGAGCG
* *
13561129 CCCTGCATGCCCGTTTCATGGGTT-AGTT-T
127 CCC-GCACGCCCGTTTCATGGGTTGACTTAT
* *
13561158 AGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGATCGG
1 -G-CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGG
* ** * * *
13561223 CAGCACGCAGGGGGGACCAGG-CTGATCCTTGGCTT-TCGCATTCTACCT-TTCCGGCTGGCTGA
64 CAGCACGCA-GGGGGACCGGGCCT-ATCCCCGGCTTGT-GCATTCTGCCTCTT-C-GCCGACTGA
* * *
13561285 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
124 GCGCCCGCACGCCCGTTTCATGGGTTGACTTAT
* *
13561318 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGGACCGGCA
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
13561383 GCATGCAGAAGGGGACCGGGCCTATCCCCGGCTTGTGCATTATGCCTCTTCGATCGACTCAGCGC
66 GCACGCAG--GGGGACCGGGCCTATCCCCGGCTTGTGCATTCTGCCTCTTCG-CCGACTGAGCGC
* *
13561448 CCGCACGCTCATTTCATGGGTTGACTTAT
128 CCGCACGCCCGTTTCATGGGTTGACTTAT
* **** ** * ** * *
13561477 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACTGGACCGGGGGTTGCAGCAGCAAGATCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * ** ** *
13561540 TAGCACGTAGGGGGACCGGGTCGATCACCGACTTGTGCATTCTGTCTCTTCGATTGGTTGAGCAC
64 CAGCACGCAGGGGGACCGGGCCTATCCCCGGCTTGTGCATTCTGCCTCTTCG-CCGACTGAGCGC
** * ** * *
13561605 CCGCACGCTTGTTTCGTAAGTTGGCTTAG
128 CCGCACGCCCGTTTCATGGGTTGACTTAT
* *
13561634 GCATACGGAGTTCATTCCACGTCTAAGC
1 GCATAGGGAGTTCATTCCATGTCTAAGC
13561662 ATACGGAGTT
Statistics
Matches: 404, Mismatches: 80, Indels: 38
0.77 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 90 0.22
158 93 0.23
159 203 0.50
160 15 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGACCGGGCCTATCCCCGGCTTGTGCATTCTGCCTCTTCGCCGACTGAGCGCCCG
CACGCCCGTTTCATGGGTTGACTTAT
Found at i:13561670 original size:26 final size:26
Alignment explanation
Indices: 13561634--13561686 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13561624 GTTGGCTTAG
13561634 GCATACGGAGTTCATTC-CACGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
13561660 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13561686 G
1 G
13561687 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13561983 original size:26 final size:26
Alignment explanation
Indices: 13561942--13561992 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13561932 TTGGCTTAGG
13561942 CATACGAAGTTCATT-CCATGTCTAAA
1 CATACGAAGTTCATTCCCA-GTCTAAA
13561968 CATACGAAG-TCGATTCCCAGTCTAA
1 CATACGAAGTTC-ATTCCCAGTCTAA
13561993 GATCAGACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 18 0.78
27 3 0.13
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:13562323 original size:26 final size:26
Alignment explanation
Indices: 13562293--13562345 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13562283 GTTGACTTAG
*
13562293 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
* *
13562319 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
13562345 G
1 G
13562346 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:13562836 original size:159 final size:158
Alignment explanation
Indices: 13562371--13562993 Score: 381
Period size: 160 Copynumber: 3.9 Consensus size: 158
13562361 GGGTTGCAGC
* * * * * *
13562371 AGCAGGATCGACAGCACGTAG-GGGGGACCGGGCCGATCCCC-AGCTTGCGCATTCTACCTCTCC
1 AGCAGGACCGACAGCACGCAGAAGGGGACAGGGCCGATCCCCGA-CTAGCGCATTCTGCCTCTCC
* ** * * *
13562434 GACTGGCTGAGCTCCTGTACAC-CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 GACTAGCTGAGAGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * ** *
13562498 CTAAGCCCCAGCTGGACTGAGGGTTGTGGT
130 CTAAGCCCCAGC-CGACCGAGAGTTACGAT
** * * * * * *
13562528 AGTGGGACCGACAGCGCGCAGAAGGGGACAGGGTCGATCCCCGGCTAGCACATTATGCCTCTTCG
1 AGCAGGACCGACAGCACGCAGAAGGGGACAGGGCCGATCCCCGACTAGCGCATTCTGCCTCTCCG
* * * * *
13562593 A-TCAGCTCA-ACGCCCGCACGCTCCTTTCCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA
66 ACT-AGCTGAGA-GCCCGCACACTCATTT-CGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
**
13562656 -GTCTAAG-ATCAGACCGAACCGAGAGTTACGAT
127 TGTCTAAGCCCCAG-CCG-ACCGAGAGTTACGAT
* * * ** * ***
13562688 AGCAGGATCGACAGCATGCAG-GGGTGGATCA-GGCCGATCTTCGATTTTTGCATTCTGCCTCTC
1 AGCAGGACCGACAGCACGCAGAAGG-GGA-CAGGGCCGATCCCCGACTAGCGCATTCTGCCTCTC
* *
13562751 CGACTAGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATG
64 CGACTAGCTGAGAGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* *
13562816 TCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGGC
129 TCTAAGCCCCAGCC-GACCGAGAG-T-T---A-C--GA----T
* * * * *
13562859 AGCAGGATCGACAGCACGCAGAGGGGGATC-GAGCTGATCCCCGACTTA-CGCATTATGCCTCTC
1 AGCAGGACCGACAGCACGCAGAAGGGGA-CAGGGCCGATCCCCGAC-TAGCGCATTCTGCCTCTC
* * * * * * * *
13562922 C-AGTCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
64 CGACT-AGCTGAGAGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCA
13562986 -GTCTAAGC
127 TGTCTAAGC
13562994 ATACAGAGTT
Statistics
Matches: 356, Mismatches: 77, Indels: 52
0.73 0.16 0.11
Matches are distributed among these distances:
157 17 0.05
158 47 0.13
159 54 0.15
160 113 0.32
161 8 0.02
164 1 0.00
165 1 0.00
167 2 0.01
170 2 0.01
171 104 0.29
172 7 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
AGCAGGACCGACAGCACGCAGAAGGGGACAGGGCCGATCCCCGACTAGCGCATTCTGCCTCTCCG
ACTAGCTGAGAGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCCGACCGAGAGTTACGAT
Found at i:13562978 original size:171 final size:166
Alignment explanation
Indices: 13562369--13563336 Score: 432
Period size: 159 Copynumber: 5.8 Consensus size: 166
13562359 GAGGGTTGCA
* * * * * *
13562369 GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCC-AGCTTGCGCATTCTACCTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGA-CTTACGCATTATGCCTCTC
* * * * * * * * * * *
13562433 C-GACTGGCTGAGCTCCTGTACAC-CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCA
65 CAGTC-AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
** * *
13562495 TGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGTAG--TGG
129 -GTCTAAGCCCCAGCCAGACCGAGGGTTGTGG-AGCAGGG
* * * * * *
13562533 G-A-C-----CGACAGCGCGCAGAAGGGGA-CAGGGTCGATCCCCGGC-TAGCACATTATGCCTC
1 GCAGCAGGATCGACAGCACGCAG-GGGGGATC-GAGCCGATCCCCGACTTA-CGCATTATGCCTC
* * * * * * *
13562589 TTC-GATCAGCTCAACGCCCGCACGCTCCTTTCCGTGGGTTGACTTATGCATACGGAGTTCATTC
63 TCCAG-TCAGCTGAGCGCCCGCACGCTCGTTT-CATGGGTTGACTTAGGCATACGGAGTTCATCC
** *
13562653 CCAGTCTAAG-ATCAGACC-GAACCGAGAG-T-T--A-C---G
126 CCAGTCTAAGCCCCAG-CCAG-ACCGAGGGTTGTGGAGCAGGG
** * ** * ** *
13562686 ATAGCAGGATCGACAGCATGCAGGGGTGGATC-AGGCCGATCTTCGATTTTTGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGCAGGGG-GGATCGA-GCCGATCCCCGACTTACGCATTATGCCTCT
* * * * * * *
13562750 CC-GACTAGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT-TCC
64 CCAGTC-AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
13562813 ATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCG
128 A-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGG-AGCAGG---G
*
13562857 GCAGCAGGATCGACAGCACGCAGAGGGGGATCGAGCTGATCCCCGACTTACGCATTATGCCTCTC
1 GCAGCAGGATCGACAGCACGCAG-GGGGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTC
*
13562922 CAGTCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
65 CAGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
** * ** * * ** *
13562987 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGTG
130 TCTAAGC---CCCAG-CCA-GACC-G---AGGGT---TGTGGAGC-A--G--G-G
* * * * * * * *
13563042 GCAGCAGGTTCGATAGCACGCCGGGGGGGTCGGGCCGATCCCCGTCTTACGCATTCTGCCTCTTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCC
* ** * * * *
13563107 GGTTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATG
66 AGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
* *
13563171 TCTAAGCCCCAGCCAGACCAAGAGTTGTGGTAGC-GGG
130 TCTAAGCCCCAGCCAGACCGAGGGTTGTGG-AGCAGGG
* * * * ** * *
13563208 ATCAGCAGCAT-G-TAG-A---A--GGGGATCGGGTTGATCTCC-AGCTTGCGCATTATGCCTCT
1 -GCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGA-CTTACGCATTATGCCTCT
* * * *
13563264 CCAGTCGGCTGAGTGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCGTACGGAGTTCATCCCCA
64 CCAGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
13563329 GTCTAAGC
129 GTCTAAGC
13563337 ATACGGAGTT
Statistics
Matches: 605, Mismatches: 135, Indels: 133
0.69 0.15 0.15
Matches are distributed among these distances:
153 1 0.00
154 1 0.00
155 2 0.00
157 13 0.02
158 45 0.07
159 146 0.24
160 103 0.17
161 6 0.01
162 1 0.00
163 1 0.00
164 3 0.00
165 4 0.01
166 2 0.00
167 8 0.01
169 1 0.00
171 107 0.18
172 12 0.02
173 2 0.00
174 3 0.00
175 4 0.01
176 2 0.00
177 1 0.00
179 2 0.00
180 5 0.01
181 3 0.00
182 2 0.00
183 7 0.01
184 95 0.16
185 22 0.04
187 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (166 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCC
AGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
CTAAGCCCCAGCCAGACCGAGGGTTGTGGAGCAGGG
Found at i:13562996 original size:26 final size:26
Alignment explanation
Indices: 13562966--13563018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13562956 GTTGACTTAG
*
13562966 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13562992 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13563018 G
1 G
13563019 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13563365 original size:343 final size:350
Alignment explanation
Indices: 13562737--13563521 Score: 933
Period size: 343 Copynumber: 2.2 Consensus size: 350
13562727 TTCGATTTTT
** * * *
13562737 GCATTCTGCCTCTCCGACTAGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATATG
1 GCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATG
* *
13562802 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCAGGAT
66 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGAGTTGTGGCAGCA-G--CGGCAGC--GA-
* *
13562867 CGACAGCACGCAGAGGGGGATCGAGCTGATCCCCGACTTACGCATTATGCCTCTCCAGTCAGCTA
125 CGACAGCACGCAGAAGGGGATCGAGCTGATCCCAGACTTACGCATTATGCCTCTCCAGTCAGCTA
13562932 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
190 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * * *** * *
13562997 CAGAGTTCATTCCCAGTCTAAGATCAAA-CTGGATCGA-GGGTTGTGGCAGCAGG-TTCGATAGC
255 CAGAGTTCATTCCCAGTCGAAGATCAAATC-AGACCGAGGGGCTCCAGCAGCAGGATT-GACAAC
** *** * *
13563059 ACGCCGGGGGGGTCGGGCCGATCCCCGTCTTAC
318 ACGCAAGGGGAACCAGGCCGATCCCCGGCTTAC
* * * *
13563092 GCATTCTGCCTCTTCGGTTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
1 GCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATG
* *
13563157 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGAGTTGTGGTAGC-G-GG-ATC-A-G-CAG
66 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGAGTTGTGGCAGCAGCGGCAGCGACGACAG
* * * * * * * *
13563216 CATGTAGAAGGGGATCGGGTTGATCTCCAG-CTTGCGCATTATGCCTCTCCAGTCGGCTGAGTGC
131 CACGCAGAAGGGGATCGAGCTGATC-CCAGACTTACGCATTATGCCTCTCCAGTCAGCTAAGCGC
* * *
13563280 CCGCACGCTCGTTTCATTGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAAGCATACGGAG
195 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
* * **
13563345 TTCATTCCTAGTCGAAGATCATATCAGACCGAGGGGCTCCAGCAGCAGGATTGACAATGCGCAAG
260 TTCATTCCCAGTCGAAGATCAAATCAGACCGAGGGGCTCCAGCAGCAGGATTGACAACACGCAAG
* ** *
13563410 GGGAACCAGGCCGGTCGTCGGCTTGC
325 GGGAACCAGGCCGATCCCCGGCTTAC
* * * *
13563436 GCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGCTCAGGCATATG
1 GCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATG
13563501 GAGTTCATTCCATGTCTAAGC
66 GAGTTCATTCCATGTCTAAGC
13563522 ATATGGAGTT
Statistics
Matches: 368, Mismatches: 58, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
343 140 0.38
344 119 0.32
345 2 0.01
346 1 0.00
349 2 0.01
350 2 0.01
353 1 0.00
355 101 0.27
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (350 bp):
GCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATG
GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGAGTTGTGGCAGCAGCGGCAGCGACGACAG
CACGCAGAAGGGGATCGAGCTGATCCCAGACTTACGCATTATGCCTCTCCAGTCAGCTAAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
TCATTCCCAGTCGAAGATCAAATCAGACCGAGGGGCTCCAGCAGCAGGATTGACAACACGCAAGG
GGAACCAGGCCGATCCCCGGCTTAC
Found at i:13564250 original size:26 final size:26
Alignment explanation
Indices: 13564220--13564272 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13564210 GTTGACTTAG
*
13564220 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
13564246 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
13564272 G
1 G
13564273 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:13564538 original size:159 final size:160
Alignment explanation
Indices: 13564333--13564751 Score: 457
Period size: 159 Copynumber: 2.6 Consensus size: 160
13564323 GATCGGGTCG
** * * *
13564333 ATCCCCGGCTTGCGCATTCTGGCCTCTTCGACCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTCT-GCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * * * **
13564398 GGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAG-CCGAATCGAGGGTTGTGGCAGTGG
65 GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAG
* * *
13564462 GACCGACAGCACGTAGAGGGGGACCGGGCTA
130 GACCAACAGCACGTAGAGGGGGACCAGGCCA
* * *
13564493 ATCCCCGGCTTGCGCATTATGCCTCTTCGACTGGCTCAGCGCCCGCACGCTCGTTTCCTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * *** * * *
13564558 ACTTATGCATACGAAGTTCATTCCCA-GCCTAAG-ATTGGACTGGACCGATGGTTGTGGCAGCAG
66 GCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAG
* * * *
13564621 GATCAACAGTACGTAGTGGGTGACCAGGCCA
130 GACCAACAGCACGTAGAGGGGGACCAGGCCA
* * * * ** *
13564652 ACCCCCTGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
13564717 GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
13564752 TACGGAGTTC
Statistics
Matches: 212, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
158 4 0.02
159 185 0.87
160 23 0.11
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (160 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAGG
ACCAACAGCACGTAGAGGGGGACCAGGCCA
Found at i:13564753 original size:26 final size:26
Alignment explanation
Indices: 13564723--13564775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13564713 GTTGGCTTAG
13564723 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13564749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13564775 G
1 G
13564776 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13565481 original size:26 final size:26
Alignment explanation
Indices: 13565445--13565497 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13565435 GGGGACTTAG
*
13565445 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
13565471 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13565497 G
1 G
13565498 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13565774 original size:159 final size:158
Alignment explanation
Indices: 13565471--13565973 Score: 480
Period size: 159 Copynumber: 3.2 Consensus size: 158
13565461 CCTAGTCTAA
* * * * * *
13565471 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCAAGGGTTGC-GACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGGTTACAG-CAGTAGGACCAA
* * * *
13565534 CAGCACACA-AGGGGGACCGGGCCGATCCCTAGCTTACGCATTCTGCCTCTCCGACCGGCTGAAT
64 CAGCACACAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCT-AA-
* *
13565598 GC-CCGCATGCCCGTTTCGTGGGTTGGCTTAG
127 GCACCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * *
13565629 GCATAGGGAGTTCATTCCATGTGTAAGCCCCAG-CCAGACCGAGGGTTATGGCAGTTGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCAAGGGTTACAGCAGTAGGACCAAC
** * *
13565693 AGCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCA
65 AGCACACAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCA
* * *
13565758 CCTGCACGCTCATTTCGTGGGTTGACTTGG
130 CC-GCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * **
13565788 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGATCAAGGGTTGCAGCAGTAGGATTAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGGTTACAGCAGTAGGACCAAC
* * * * ** *
13565852 AGCTCACAGGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGCCAGC-AGAGC
65 AGCACACAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTA-AGC
*
13565916 ACCCCCACGCTCGTTTCGTGGGTTGGCTTAG
129 A-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
13565947 GCATACGGAATTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13565974 TATACGGAGT
Statistics
Matches: 278, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 57 0.21
159 211 0.76
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCAAGGGTTACAGCAGTAGGACCAACA
GCACACAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCAC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13567648 original size:159 final size:159
Alignment explanation
Indices: 13567379--13568130 Score: 638
Period size: 159 Copynumber: 4.7 Consensus size: 159
13567369 GTAGGATCGA
* * * * * * *
13567379 CAGCACGCAGA-GGGGATCAGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCC-GATCGGTTGAG
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCT-GGGTCAG
* * * * * * * * *
13567442 CGCCCGCACGCCCGATTCGTGGATTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG
65 CACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
13567507 CCGGACCAAGGGTTGTGGCAGTGGAACTAG
130 CCGGACCGAGGGTTGTGACAGAGGAACTAG
* * **
13567537 CAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTTGGCTGGGTCAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGGTCAGC
* * * **
13567602 ACCTGTACGCTTGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAG
66 ACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG
* * * * *
13567665 ACCAGACCGAGGGTTGTCACAACAGGATCGA-
130 -CCGGACCGAGGGTTGTGAC-AGAGGAACTAG
* * * * * ** *** *
13567696 CAGCATGCAG-GGGGGACCGGGCCGATCCCCGTCCTGTGCATTCTGCCTCTCCGATTTACTGAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGGTCAGC
* * * *
13567760 ACCCACATGCTCGTTTCATGGGTTGGCTTA-GCCATATGGAGTTCATTCCATGTCTAAGCCCCAG
66 ACCCGCACGCTCGTTTCATGGGTTGACTTATG-CATACGGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
13567824 TCGGACCGAGGGTTGTGACAGCGGGAC-CG
130 CCGGACCGAGGGTTGTGACAGAGGAACTAG
* * * * * * * * *
13567853 ATAGGATGCAGAGGTGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCCGGT
1 -CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT----CCGGCTGGG
* * * * * * * * *
13567918 TGAGCGCCTGCACGCCCGATTCATGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCC
61 TCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCATGTCTAAGCC
* *
13567983 CCAGCCGGACCGAGGGTTGTGGCAGAGGGACTAG
126 CCAGCCGGACCGAGGGTTGTGACAGAGGAACTAG
* * * * *
13568017 CAGCACGTAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCTGGGTCAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGGTCAGC
* * *
13568082 ACCCGTACACTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCC
66 ACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCC
13568131 CAGTTTAAGA
Statistics
Matches: 462, Mismatches: 115, Indels: 33
0.76 0.19 0.05
Matches are distributed among these distances:
157 5 0.01
158 126 0.27
159 191 0.41
160 8 0.02
163 130 0.28
164 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGGTCAGC
ACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
CGGACCGAGGGTTGTGACAGAGGAACTAG
Found at i:13567892 original size:317 final size:317
Alignment explanation
Indices: 13567316--13567902 Score: 730
Period size: 317 Copynumber: 1.9 Consensus size: 317
13567306 CCCAATCTAA
** * * **
13567316 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAACAGGATCGACA
* * * * ** *
13567381 GCACGCAGAGGGGATCAGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCCGATCGGTTGAGCGCC
66 GCACGCAGAGGGGACCAGGCCGATCCCCGGCCTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
* * *
13567446 CGCACGCCCGATTCGTGGATTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CACACGCCCGATTCATGGATTGGCTAAGCCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * *
13567511 ACCAAGGGTTGTGGCAGTGGAACTAGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
196 ACCAAGGGTTGTGACAGGGGAACGAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCG
13567576 CATTATGCCTTTTTGGCTGGGTCAGCACCTGTACGCTTGTTTCATGGGTTGACTTAT
261 CATTATGCCTTTTTGGCTGGGTCAGCACCTGTACGCTTGTTTCATGGGTTGACTTAT
*
13567633 GCATACGGAGTTCATTC-CTAGTCTAAGATCAGACCAGACCGAGGGTTGTC-ACAACAGGATCGA
1 GCATACGGAGTTCATTCTC-AGTCTAAGATCAGACCAGACCGAGGGTT-ACGACAACAGGATCGA
* * * * * **
13567696 CAGCATGCAGGGGGGACCGGGCCGATCCCCGTCCTGTGCATTCTGCCTCTCCGATTTACTGAGCA
64 CAGCACGCAGAGGGGACCAGGCCGATCCCCGGCCTGCGCATTCTGCCTCTCCGATCGACTGAGCA
* * * * * * *
13567761 CCCACATGCTCGTTTCATGGGTTGGCTTAGCCATATGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CCCACACGCCCGATTCATGGATTGGCTAAGCCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * * *
13567826 GGACCGAGGGTTGTGACAGCGGGACCGA-TAGGATGCAGAGGTGGACTGGGTCGATCCCCAGCTT
194 GGACCAAGGGTTGTGACAG-GGGAACGAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTT
13567890 GCGCATTATGCCT
258 GCGCATTATGCCT
13567903 CTCCGACCGG
Statistics
Matches: 223, Mismatches: 44, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
316 1 0.00
317 216 0.97
318 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAACAGGATCGACA
GCACGCAGAGGGGACCAGGCCGATCCCCGGCCTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
CACACGCCCGATTCATGGATTGGCTAAGCCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCAAGGGTTGTGACAGGGGAACGAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCG
CATTATGCCTTTTTGGCTGGGTCAGCACCTGTACGCTTGTTTCATGGGTTGACTTAT
Found at i:13568181 original size:159 final size:159
Alignment explanation
Indices: 13567352--13568187 Score: 581
Period size: 159 Copynumber: 5.2 Consensus size: 159
13567342 GATTGGACCG
*** * * * *
13567352 GACCGAGGGTTACGGCAGTAGGATCGACAGCACGCAGA-GGGGATCAGGCCGATCCTCGGCTTGC
1 GACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGC
* * * * * * * * * * * * *
13567416 GCATTTTGCCTCTCC-GATCGGTTGAGCGCCCGCACGCCCGA-TTCGTGGATTGGCTAAGGCATA
66 GCATTATGCCTCTCCGGCT-GGGTCAGCACCCGTACACTC-ATTTCATGGGTTGACTTATGCATA
* *
13567479 AGGAGTTCATTCCATGTCTAAGCCCCAGCCG
129 CGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * *
13567510 GACCAAGGGTTGTGGCAG-TGGAACTAGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTG
1 GACCGAGGGTTGTAGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTG
* ** * * **
13567574 CGCATTATGCCTTTTTGGCTGGGTCAGCACCTGTACGCTTGTTTCATGGGTTGACTTATGCATAC
65 CGCATTATGCCTCTCCGGCTGGGTCAGCACCCGTACACTCATTTCATGGGTTGACTTATGCATAC
**
13567639 GGAGTTCATTCC-TAGTCTAAG-ATCAGACCA
130 GGAGTTCATTCCAT-GTCTAAGCCCCAG-CCA
* * * *
13567669 GACCGAGGGTTGTCA-CAACAGGATCGACAGCATGCAG-GGGGGACCGGGCCGATCCCCGTCCTG
1 GACCGAGGGTTGT-AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTG
* * ** *** * * *
13567732 TGCATTCTGCCTCTCCGATTTACTGAGCACCC--ACATGCTCGTTTCATGGGTTGGCTTA-GCCA
65 CGCATTATGCCTCTCCGGCTGGGTCAGCACCCGTACA--CTCATTTCATGGGTTGACTTATG-CA
* * *
13567794 TATGGAGTTCATTCCATGTCTAAGCCCCAGTCG
127 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * * * * *
13567827 GACCGAGGGTTGT-GACAGCGGGACCGATAGGATGCAGAGGTGGACTGGGTCGATCCCCAGCTTG
1 GACCGAGGGTTGTAG-CAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTG
* * * * * * * * * * *
13567891 CGCATTATGCCTCTCCGACCGGCCGGTTGAGCGCCTGCACGCCCGA-TTCATGGGTTGGCTAAGG
65 CGCATTATGCCTCT----CCGGCTGGGTCAGCACCCGTACACTC-ATTTCATGGGTTGACTTATG
* *
13567955 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
125 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
13567990 GACCGAGGGTTGTGGCAG-AGGGA-CTAGCAGCACGTAGAGGGGGACTGGGTCGATCCCCGGCTT
1 GACCGAGGGTTGTAGCAGCA-GGATCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTT
* *
13568053 GCGCATTTTGCCTCTTCGGCTGGGTCAGCACCCGTACACTCATTTCATGGGTTGACTTATGCATA
64 GCGCATTATGCCTCTCCGGCTGGGTCAGCACCCGTACACTCATTTCATGGGTTGACTTATGCATA
* ** *
13568118 CGGAGTTCATTCCCA-GTTTAAG-ATCGGACCA
129 CGGAGTTCATT-CCATGTCTAAGCCCCAG-CCA
* *
13568149 GACCGACGGTTGTAGCAGCAGGATCGATAGCACGCAGAG
1 GACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGAG
13568188 CGACCGCACG
Statistics
Matches: 525, Mismatches: 121, Indels: 63
0.74 0.17 0.09
Matches are distributed among these distances:
156 2 0.00
157 6 0.01
158 149 0.28
159 226 0.43
160 13 0.02
162 2 0.00
163 123 0.23
164 2 0.00
165 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
GACCGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGC
GCATTATGCCTCTCCGGCTGGGTCAGCACCCGTACACTCATTTCATGGGTTGACTTATGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:13568372 original size:26 final size:26
Alignment explanation
Indices: 13568321--13568373 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13568311 CCCAGCTTAG
* **
13568321 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATACCTAA
13568347 GCATACGAAGTTCATTCCCA-ACCTAA
1 GCATACGAAGTTCATT-CCATACCTAA
13568373 G
1 G
13568374 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATACCTAA
Found at i:13568719 original size:26 final size:26
Alignment explanation
Indices: 13568689--13568741 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13568679 GTTGACTTAG
13568689 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13568715 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13568741 G
1 G
13568742 ATTAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13569497 original size:159 final size:159
Alignment explanation
Indices: 13569258--13569697 Score: 414
Period size: 158 Copynumber: 2.8 Consensus size: 159
13569248 TAGGATCGGT
* *
13569258 AGCACGTAG-GGGGGATCGGGCCGATCCCC-AGCTTACGCATTCTGCCTCTTCGATCGGCTGAGC
1 AGCACGTAGAGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
* * *
13569321 GTCGGCAT--GCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
65 G-C-CCATACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCA
** * **
13569384 G-CCGGACCGAGGGTTATGGCAACAGGA-CTGGC
128 GACCAAACCGAGGGTTACGGC-ACAGGATC-AAC
* * * * * *
13569416 AGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGGTCAGTG
1 AGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCG
*** * * *
13569481 CCCATACGCTCGTTTCATGGGTCAACTTATGCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGA
66 CCCATACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCACCAGA
* *
13569544 CCAAACCGAGGGTTGCGGCAGAGGATCAAC
130 CCAAACCGAGGGTTACGGCACAGGATCAAC
* ** * * **
13569574 AGCACGCA-AGGGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGACCGATTGAG
1 AGCACGTAGA-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTC-GATCGGCTGAG
* * * * *
13569637 CACCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
64 CGCCCATACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
13569698 TATGGAGTTC
Statistics
Matches: 226, Mismatches: 45, Indels: 21
0.77 0.15 0.07
Matches are distributed among these distances:
157 10 0.04
158 110 0.49
159 101 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
AGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCG
CCCATACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGAC
CAAACCGAGGGTTACGGCACAGGATCAAC
Found at i:13569719 original size:26 final size:26
Alignment explanation
Indices: 13569669--13569721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13569659 GTTGGCTTAG
*
13569669 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATATCTAA
13569695 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATATGGAGTTCATT-CCATATCTAA
13569721 G
1 G
13569722 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATATCTAA
Found at i:13570430 original size:26 final size:26
Alignment explanation
Indices: 13570393--13570445 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13570383 GTTGACTTAG
* *
13570393 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
*
13570419 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
13570445 G
1 G
13570446 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:13570611 original size:26 final size:26
Alignment explanation
Indices: 13570575--13570627 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13570565 GTTGGCTTAG
13570575 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13570601 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13570627 G
1 G
13570628 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13571357 original size:417 final size:404
Alignment explanation
Indices: 13570596--13571414 Score: 1137
Period size: 417 Copynumber: 2.0 Consensus size: 404
13570586 TCATTCCATG
* *
13570596 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCACGATACACATGCTGGGCTTGGG
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATACACATGCTGGGCTTGGG
* ** *
13570661 CATGTGCTGGTGCCACATTTTTTTTGCCCGGGGCACCATCGTCGGAACATCACCGGAGAGCCTAA
66 CATGTACTGGTGCCACATTTTTTTCACCCGAGGCACCATCGTCGGAACATCACCGGAGAGCCTAA
* * *
13570726 CCAGCGGCATTGGGGGTTCTGGCAATAGGGGGCTGGGGGGTGTGCACACATGATGTGCGATGGGT
131 CCAGCGGCATTGGGGGTTCTGACAATAGGGGGCCGGGCGGTGTGCACACATGATGTGCGATGGGT
13570791 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCCAGAACTCACACCCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCCAGAACTCACACCCCCTT
*
13570856 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCTATTAATGTGTCTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAATGTGTCTGAAATGGGGACAC
** *
13570921 TTTTTTCAAAGGGTCACAAAATCTTCTCCACCTT-AAGTTTTTAGCTG-ATTTTTTTTTTGCATG
326 TTTTTTCAAACAGTCACAAAATCTTCTCCA-CTTCAAGTTTTTAGCTGCA-TTTTTTTGTGCATG
13570984 CCAACAAAAA-TACATT
389 CCAA-AAAAAGTACATT
* * *
13571000 TCTAAGCATAGGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATGCTGGGCTTGGG
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATACACATGCTGGGCTTGGG
**
13571065 CATGTACTGGTGCTGCATTTTTTTCACCCGAGGCACCATCGCTGCAGGATCACCGGAACATCACC
66 CATGTACTGGTGCCACATTTTTTTCACCCGAGGCACCA----T-C--G-T---CGGAACATCACC
* * * * * *
13571130 GGATAGCCTAACC-GACGGTATTGGAGGTT-TCGACGATTGGGGGGCCGAGGCGGTGTGCGCACA
120 GGAGAGCCTAACCAG-CGGCATTGGGGGTTCT-GAC-AATAGGGGGCCG-GGCGGTGTGCACACA
* * **
13571193 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
181 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCCAG
* *
13571258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTGAA-GTG
246 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATT-AATGTG
* *
13571322 TCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCGAGTTTTTAGTTGCA
310 TCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCAAGTTTTTAGCTGCA
13571387 TTTTTTTGTGCATGCCAAAAAAAGTACA
375 TTTTTTTGTGCATGCCAAAAAAAGTACA
13571415 AGGACATCCT
Statistics
Matches: 364, Mismatches: 32, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
404 92 0.25
408 1 0.00
409 1 0.00
411 1 0.00
412 1 0.00
414 2 0.01
415 38 0.10
416 17 0.05
417 208 0.57
418 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (404 bp):
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATACACATGCTGGGCTTGGG
CATGTACTGGTGCCACATTTTTTTCACCCGAGGCACCATCGTCGGAACATCACCGGAGAGCCTAA
CCAGCGGCATTGGGGGTTCTGACAATAGGGGGCCGGGCGGTGTGCACACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCCAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAATGTGTCTGAAATGGGGACAC
TTTTTTCAAACAGTCACAAAATCTTCTCCACTTCAAGTTTTTAGCTGCATTTTTTTGTGCATGCC
AAAAAAAGTACATT
Found at i:13572101 original size:159 final size:158
Alignment explanation
Indices: 13571741--13572241 Score: 375
Period size: 159 Copynumber: 3.2 Consensus size: 158
13571731 CAGTTTAAGG
* * * * **
13571741 ATACAGAGTTCATTCCCAGTCTAACATCAGATCGGATCAAGGGTTGCGGTAGCAGGATCGGTAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGACAGC
* * * * *
13571806 ACGCAGGGGGGACCAAGCTGATCCCTGGCTTGCGCATTTTGCATCTTCGGTCGGCTGAGCGCTCG
66 ACGCAGGGGGGACCAAGCCGATCCCTGACTTGCGCATTATGCATCTCCGGTCGGCTCAGCGCTCG
* *
13571871 CACACCCGTTTCGTGGGTTGGCTTAGGC
131 CACACCCATTTCGTGGGTTGACTTAGGC
** * ** * * * *
13571899 ATAGGGAGTTCATT-CCATGTCAAAGCCCCAGCT-AGACCGAGGGTTGTGGCAGCGGGA-CTGAC
1 ATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTGTGGCAGCAGGATC-GAC
* * * * *
13571961 AGCATGTAGAGGGGGACCAGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGG-CTTGCTCAGC
63 AGCACGCAG-GGGGGACCAAGCCGATCCCTGACTTGCGCATTATGCATCTCCGGTC-GGCTCAGC
** *
13572025 GCTCG-ATTGCTCATTTCGTGGGTTGACTTAGGC
126 GCTCGCA-CACCCATTTCGTGGGTTGACTTAGGC
** * * * *
13572058 ATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGTGGCAACAAGATTGATAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGACAGC
* * ** * * * * * * * * * *
13572123 ACACAGGGGGGGATCGGGCCGATCCCCGACTTGTGCGTTCTACCTCTTCGGTCGGCTGAGCACCC
66 ACGCA-GGGGGGACCAAGCCGATCCCTGACTTGCGCATTATGCATCTCCGGTCGGCTCAGCGCTC
* * * * *
13572188 GCACGCTCGTTTTGTGGGTTGGCTTAGGC
130 GCACACCCATTTCGTGGGTTGACTTAGGC
* *
13572217 ATACGGAGTTCAAT-CCATGTCTAAG
1 ATACAGAGTTCATTCCCA-GTCTAAG
13572242 CATATGGAGT
Statistics
Matches: 264, Mismatches: 66, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
157 4 0.02
158 50 0.19
159 204 0.77
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGGGGGGACCAAGCCGATCCCTGACTTGCGCATTATGCATCTCCGGTCGGCTCAGCGCTCG
CACACCCATTTCGTGGGTTGACTTAGGC
Found at i:13573194 original size:26 final size:26
Alignment explanation
Indices: 13573158--13573210 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13573148 GTTGGCTTAG
*
13573158 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13573184 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13573210 G
1 G
13573211 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13573909 original size:26 final size:26
Alignment explanation
Indices: 13573870--13573922 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13573860 GTTGACTTAG
* *
13573870 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
13573896 GCATACAGATTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13573922 G
1 G
13573923 ATCCGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13574424 original size:26 final size:26
Alignment explanation
Indices: 13574394--13574446 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13574384 GTTGACTTAG
*
13574394 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13574420 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13574446 G
1 G
13574447 ATTTAATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13574433 original size:184 final size:184
Alignment explanation
Indices: 13574125--13574604 Score: 508
Period size: 184 Copynumber: 2.6 Consensus size: 184
13574115 TAGCACGCTG
* * * * * * * ** *
13574125 GGGGGATCGGGCCAATGCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGTGCACCCGCACGCT
1 GGGGGATCGGGCCGATCCCCGACTTGCGCATT-TACCGCTCTGATCAGCTAAGCGCCCGCACGCT
* * **
13574190 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATTTCTAAGCATATGGAGTTCATTCC
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCATACAGAGTTCATTCC
* *
13574254 CAGTCTAAGATCGGACCGA-ACCGAGGGTTGC-GACAGCAGGA-CCAACAGCACGCAA
130 CAGTCTAAGAT-GGAACGAGACCGAGGGTTGCAG-CAGCAGGATCCAA-AGAACGCAA
* * *
13574309 GGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCTGA-CTAGCTGAA-CGCCCGCACG
1 GGGGGATCGGGCCGATCCCCGACTTGCGCATT-TACCGCTCTGATC-AGCT-AAGCGCCCGCACG
* *
13574372 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGCATACAGAGTTCATT
63 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCATACAGAGTTCATT
** ** * * * *
13574436 CCCAGTCTAAGATTTAATTAGACCGAGGGTTGCAGTAGCAGGATCGAAAGAACGTAG
128 CCCAGTCTAAGATGGAACGAGACCGAGGGTTGCAGCAGCAGGATCCAAAGAACGCAA
* * * * *
13574493 GGGGGATCGGGCTGATCCCCGACTTGCGCATTTTCCGCTCTGATCGGCTAAGCGCCGGCACGCCC
1 GGGGGATCGGGCCGATCCCCGACTTGCGCATTTACCGCTCTGATCAGCTAAGCGCCCGCACGCTC
** *
13574558 GTTTCGTGGGTTGGCTTAGGCATTGGGAGTTCATT-CCATGTCTAAGC
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGC
13574605 CCCAGCCTGA
Statistics
Matches: 247, Mismatches: 40, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
182 5 0.02
183 64 0.26
184 171 0.69
185 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (184 bp):
GGGGGATCGGGCCGATCCCCGACTTGCGCATTTACCGCTCTGATCAGCTAAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCATACAGAGTTCATTCCC
AGTCTAAGATGGAACGAGACCGAGGGTTGCAGCAGCAGGATCCAAAGAACGCAA
Found at i:13575973 original size:158 final size:155
Alignment explanation
Indices: 13575499--13575998 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 155
13575489 CAGTCTAAGG
* * * * *
13575499 ATACAGAGTTCATTCCCA-GTCTAACATCAAACCGGATCAAGGGTTGCGGTAGCAGGATCGGTAG
1 ATACAGAGTTCATT-CCATGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCAGGATTGATAG
** * * * * *
13575563 CACGCACTGGGGACCGAGCTGATCCCCGACTTGCGCATTTTGCATCTTCGATCGGCTGAGCGCTC
65 CACGCAGGGGGGACAG-GCCGAT-CCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCACTC
* * * *
13575628 GCACACCCATTTCGTGGGTTGGCTTAGGC
128 G-ACGCTCGTTTCATGGGTTGGCTTAGGC
** * ** * * * ** * * *
13575657 ATAGGGAGTTCATTCCATGTCAAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCGGGACTGATAGC
1 ATACAGAGTTCATTCCATGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCAGGATTGATAGC
* * * ** * *
13575722 ATGCAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCTGCTCAGCACTC
66 ACGCAG-GGGGGA-CAGGCCGATCCC-GACTTGCGCATTATGCCTCTTCGATCGGCTGAGCACTC
* *
13575787 GATTGCTCGTTTCATGGGTTGACTTAGGC
128 GA-CGCTCGTTTCATGGGTTGGCTTAGGC
*** * * *
13575816 ATACAGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAAGATTGACAG
1 ATACAGAGTTCATT-CCATGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCAGGATTGATAG
* * *
13575880 CACGCAAGGGGGGATCAGGCCGATCCCGACTTGCACATTCTGCCTCTTCGATCGGCTGAGCACCC
65 CACGC-AGGGGGGA-CAGGCCGATCCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCACTC
13575945 GTACGCTCGTTTCATGGGTTGGCTTAGGC
128 G-ACGCTCGTTTCATGGGTTGGCTTAGGC
*
13575974 ATACAGAGTTCAATCCATGTCTAAG
1 ATACAGAGTTCATTCCATGTCTAAG
13575999 CATACGGAGT
Statistics
Matches: 264, Mismatches: 69, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 6 0.02
158 126 0.48
159 125 0.47
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
ATACAGAGTTCATTCCATGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCAGGATTGATAGC
ACGCAGGGGGGACAGGCCGATCCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCACTCGAC
GCTCGTTTCATGGGTTGGCTTAGGC
Found at i:13577654 original size:26 final size:26
Alignment explanation
Indices: 13577625--13577677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13577615 GTTGACTTAG
13577625 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13577651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13577677 G
1 G
13577678 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13577950 original size:157 final size:157
Alignment explanation
Indices: 13577706--13577991 Score: 385
Period size: 157 Copynumber: 1.8 Consensus size: 157
13577696 TTGCGACGGC
* ** * ** *
13577706 AGGATCGGTAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTACGTATTCTGCCTCTCTGATCG
1 AGGACCGGTAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTACACATTCTGCCTCTCCGATCG
* * * **
13577771 ACTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAC
66 ACTGAGCACCCGCACGCCCGTTTCGTGGGTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAAC
13577836 CCTGGTCGAAGCGGGGGTTGGGGCAGT
131 CCTGGTCGAAGCGGGGGTTGGGGCAGT
* * * *
13577863 AGGACCGGTAGCACGCTGGGGGGATCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGTC-
1 AGGACCGGTAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTACACATTCTGCCTCTCCGATCG
* * *
13577927 AGTTGAGCACCCGCACGCTCGTTTCGTGGGTTCGCTTGGGCATACAGAGTTCATTCCATGTCTAA
66 A-CTGAGCACCCGCACGCCCGTTTCGTGGGTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAA
13577992 GCATATGGAG
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
156 1 0.01
157 108 0.99
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (157 bp):
AGGACCGGTAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTACACATTCTGCCTCTCCGATCG
ACTGAGCACCCGCACGCCCGTTTCGTGGGTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAAC
CCTGGTCGAAGCGGGGGTTGGGGCAGT
Found at i:13578125 original size:183 final size:182
Alignment explanation
Indices: 13577872--13578360 Score: 565
Period size: 183 Copynumber: 2.7 Consensus size: 182
13577862 TAGGACCGGT
* * * * * * *
13577872 AGCACGCTGGGGGGATCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGTCAGTTGAGCAC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCA-CTTGCGCATTTTGCCTCTCTGATCAGCTGAGCAC
* * ***
13577937 CCGCACGCTCGTTTCGTGGGTTCGCTTGGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAG
65 CCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAG
* * * *
13578002 TTCATTCCCAGTCTAAGATCGGATTGGACC-AGGGTTGCGACAGCAGGA-CCAA
129 TTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCAACAGCAGGATCCAA
* *
13578054 CAGCACGCAGGGGGGATCGGACCGATCCCCGACTTGTGCATTTTGCCTCTCTGA-CTAGCTGAGC
1 -AGCACGCAGGGGGGATCGGGCCGATCCCC-ACTTGCGCATTTTGCCTCTCTGATC-AGCTGAGC
* *
13578118 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGCATACA
63 ACCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATACA
* *
13578182 AAGTTCATTCCCAGTCTAAGATCTAACTAGACCGAGGGTTGCAACAGCAGGATCGAA
126 AAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCAACAGCAGGATCCAA
* * * * * * *
13578239 AGAACGTAGGGTGGACCGGGCCGATCCCCAACTTGCGCATTTTGCCTCTCTGATCGGCTAAGCGC
1 AGCACGCAGGGGGGATCGGGCCGATCCCC-ACTTGCGCATTTTGCCTCTCTGATCAGCTGAGCAC
* **
13578304 CTGCACGC-CTGTTTCGTGGGTTTGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGC
65 CCGCACGCTC-GTTTCGTGGG-TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13578361 CCCAACCTGA
Statistics
Matches: 259, Mismatches: 37, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
182 2 0.01
183 134 0.52
184 116 0.45
185 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.25
Consensus pattern (182 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCACTTGCGCATTTTGCCTCTCTGATCAGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTT
CATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCAACAGCAGGATCCAA
Found at i:13579775 original size:26 final size:26
Alignment explanation
Indices: 13579725--13579777 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13579715 GTTGGCTTAG
* *
13579725 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13579751 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13579777 G
1 G
13579778 ATCCAATCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13579959 original size:26 final size:26
Alignment explanation
Indices: 13579922--13579974 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13579912 GTTGGGTTAG
13579922 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
13579948 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATACCG-AGTTCATTCCCAGTCTAA
13579974 G
1 G
13579975 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:13580306 original size:159 final size:158
Alignment explanation
Indices: 13579948--13580449 Score: 369
Period size: 159 Copynumber: 3.2 Consensus size: 158
13579938 CCATGTCTAA
* * ** *
13579948 GCATACGAAGTTCATTCCCA-GTCTAAGATC-GAACCGGACTGAGGGTTGCGATAGCAGGATCGA
1 GCATACAAAGTTCATT-CCATGTCTAAGATCAG-ACCGGACTGAGGGTTACGGCAGCAGGATAGA
* ** ** * * * * * * **
13580011 TAGCACGTAG-GGGGGACCAGGTCGATCCCGA-CTTACGCATTCTGCCTCTTCGATCGACTGAGC
64 CAGCACCCAGAAAGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGACAAAG-
* * * * *
13580074 GCCCGCATG-TCCATTTCATGGGTTGGCTT-G
128 ACCCACACGCT-CATTTCATGAGTTGACTTAG
* * ** ** *
13580104 GCCATA-AGGAGTTCATTCCATGTGTAAGCCCTAG-CCGGACTGAGGGTTGTGGCAGCGGGACTA
1 G-CATACA-AAGTTCATTCCATGTCTAAGATC-AGACCGGACTGAGGGTTACGGCAGCAGGA-TA
* * ** * * * *
13580167 G-CAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTTTTCGGCTGGATCA
62 GACAGCACCCAGAAAGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGG-TCGA-CA
* *
13580231 AAG-CTCACACGCTCATTTCGTGAGTTGACTTAG
125 AAGACCCACACGCTCATTTCATGAGTTGACTTAG
* *
13580264 GCATACAAAGTTCATTCCCA-GTCTAAGATCAGACCGGGCTGAGGGTTACGGCAGCAGGATCGAC
1 GCATACAAAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATAGAC
* * **
13580328 AGCACCCAGAAAGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCA
65 AGCACCCAGAAAGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGACAAAG-A
* * *
13580393 CCCACACGCTCGTTTCATGGGTTGGCTTAG
129 CCCACACGCTCATTTCATGAGTTGACTTAG
*
13580423 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACAAAGTTCATTCCATGTCTAAG
13580450 CATACGAAGT
Statistics
Matches: 270, Mismatches: 57, Indels: 35
0.75 0.16 0.10
Matches are distributed among these distances:
156 4 0.01
157 52 0.19
158 28 0.10
159 173 0.64
160 10 0.04
161 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACAAAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATAGACA
GCACCCAGAAAGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGACAAAGACC
CACACGCTCATTTCATGAGTTGACTTAG
Found at i:13580453 original size:26 final size:26
Alignment explanation
Indices: 13580423--13580475 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13580413 GTTGGCTTAG
13580423 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13580449 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13580475 G
1 G
13580476 TTAGGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13580821 original size:26 final size:26
Alignment explanation
Indices: 13580785--13580837 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13580775 GTAGACTTAG
13580785 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13580811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13580837 G
1 G
13580838 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13587947 original size:26 final size:26
Alignment explanation
Indices: 13587911--13587963 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13587901 GTTGACTTAG
13587911 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13587937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13587963 G
1 G
13587964 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13588428 original size:26 final size:26
Alignment explanation
Indices: 13588399--13588451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13588389 GTTGGCTTAG
13588399 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13588425 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13588451 G
1 G
13588452 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13588815 original size:26 final size:26
Alignment explanation
Indices: 13588779--13588831 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13588769 GTTGACTTAG
13588779 GCATACAAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* * *
13588805 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
13588831 G
1 G
13588832 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:13590370 original size:26 final size:26
Alignment explanation
Indices: 13590334--13590386 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13590324 GTTGACTTAG
*
13590334 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
13590360 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
13590386 G
1 G
13590387 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:13590537 original size:352 final size:356
Alignment explanation
Indices: 13589867--13590552 Score: 866
Period size: 365 Copynumber: 1.9 Consensus size: 356
13589857 TACGGCAGCA
* * *
13589867 GGATTGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAG
1 GGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCAG
** * * *
13589932 TAGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
66 TAGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
* * * *
13589997 ATACAGAGTTCATTCCCAGTCTAGGATCTAACCGGATCGAGGGTTGCGGCAGTAGGACCAGCAGC
131 ATACAGAGTTCATTCCAAGTCTAAGATCGAACCAGATCGAGGGTTGCGG-AGT---A--AGCAGC
* * * *
13590062 AGGATCGGTAGCACGCAGGAGGGTATCGGGCCAATCCCCGGCTCGTGCATTCTGCCTCTCCGGCC
190 --GATCGGTAGCACGCAGGAGGGTATCGAGCCAATCCCCGGCTCGCGCATTCTACCTCTCCAGCC
* *
13590127 GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
253 GACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
13590192 GCCCCAGTCGAACCGAGGGTGGCAGCAAGACCGATAGTT
318 GCCCCAGTCGAACCGAGGGTGGCAGCAAGACCGATAGTT
* * * * * * * *
13590231 GGATCGACAGCATGTAGAGGGGGACCGGGCTGATCCTCGGTTTGTGCATTATGCCTCTTCGACCG
1 GGATCGACAGCATGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCA
* * **
13590296 GCT-GAGCGCCCACATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCC-TAGTCTA
65 G-TAGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAT-GTCTA
* *
13590359 AGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGATCGAGGGTTGC-G-GT-AGCAGC-AT
128 AGCATACAGAGTTCATTCCAAGTCTAAGATCGAACCAGATCGAGGGTTGCGGAGTAAGCAGCGAT
*
13590420 CGGTAGCACGCAAGG-GGG-ATCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGACT
193 CGGTAGCACGC-AGGAGGGTATCGAGCCAATCCCCGGCTCGCGCATTCTACCTCTCCAGCCGACT
* * * *
13590483 GGGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCGTAGGGATTTCATTCCATGTCTAAGCCC
257 GAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
*
13590548 GAGTC
322 CAGTC
13590553 AGACAGAGGG
Statistics
Matches: 280, Mismatches: 38, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
352 103 0.37
353 16 0.06
354 3 0.01
356 6 0.02
362 2 0.01
364 17 0.06
365 132 0.47
366 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (356 bp):
GGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCAG
TAGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
ATACAGAGTTCATTCCAAGTCTAAGATCGAACCAGATCGAGGGTTGCGGAGTAAGCAGCGATCGG
TAGCACGCAGGAGGGTATCGAGCCAATCCCCGGCTCGCGCATTCTACCTCTCCAGCCGACTGAGT
GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
CGAACCGAGGGTGGCAGCAAGACCGATAGTT
Found at i:13591503 original size:355 final size:354
Alignment explanation
Indices: 13590921--13591799 Score: 1088
Period size: 355 Copynumber: 2.5 Consensus size: 354
13590911 ATAGTAGGAC
* * * * *
13590921 CAGTAGCAGGATCGGTAGCACGCAGGAAGGGACCGAGCTGATCCCTGGCTTGTGCATTCTGCCTC
1 CAGTAGCAGGATCGGCAGCACGCAGG-GGGGACCG-GCCGATCCCCGGCTTGCGCATTCTGCCTC
* * * *
13590986 TCCGG-TGGTTGAGCGCCCGCACGCTCGTTTCG-GGGTTGGCTTAGGCATACAGAGTTCATTTCA
64 TCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
* * *
13591049 TGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGTAGGACCGGCAGCGAGATCAGCAGCATGCA
129 TGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAGCAGCATGCA
* * * * * * * * *
13591114 AAGAGGGACTGGGCTGATCTCTGGCTTACGCATTATACCTCTCCGGCCGACTGAGCACCCGCACG
194 AAGAGGGACCGGCCTGATCCCTGACTTACGCATTACACATCTCCGACCGACTGAGCACCCGAACA
* * *
13591179 CTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTT
259 CTCGATTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTC
* *
13591244 CCAGTCTAAGATC-GATCCGAACTGAGGGCTA
324 CCAATCTAAGATCGGA-CCGAACCGAGGGCTA
* *
13591275 CGGTAGCAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCT
1 CAGTAGCAGGATCGGCAGCACGCAGGGGGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCT
*
13591340 CCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
65 CCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
* * * *
13591405 GTCTAAGCCCTAGCTGAATCGAGGGTTGTGGTAGCAGGACCGGCAGCGTGATC-GACAGCATGCA
130 GTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAG-CAGCATGCA
* * * * ** * * *
13591469 AAGGGGGACCGGCCTGATCCCTGACTTGCGCATTACGCATCTCTGATTGGCTGAGCGCCTGAACA
194 AAGAGGGACCGGCCTGATCCCTGACTTACGCATTACACATCTCCGACCGACTGAGCACCCGAACA
* ** * *
13591534 CTCGATTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
259 CTCGATTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTC
* * *
13591599 CCAATCTAAGATCGGACCGGACCGAGGGTTG
324 CCAATCTAAGATCGGACCGAACCGAGGGCTA
* * * * *
13591630 CAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCC-AGTCCCCGGCTTGCTCATTTTGCCTC
1 CAGTAGCAGGATCGGCAGCACGCAGGGGGGA-CCGGCCGA-TCCCCGGCTTGCGCATTCTGCCTC
* * **
13591694 TCCGGCCGGCTGAGCACCCGCACG-TCCGTTTTGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCC
64 TCCGGCCGGCTGAGCACCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
*
13591758 ATGTCTAAGCCCCAGCCGAA-CTGAGGGTTGTGGCAGCGGGAC
128 ATGTCTAAGCCCCAGCCGAATC-GAGGGTTGTGGCAGCAGGAC
13591800 TTGCAGCACG
Statistics
Matches: 450, Mismatches: 66, Indels: 17
0.84 0.12 0.03
Matches are distributed among these distances:
353 36 0.08
354 52 0.12
355 359 0.80
356 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (354 bp):
CAGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
CGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
TCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAGCAGCATGCAAA
GAGGGACCGGCCTGATCCCTGACTTACGCATTACACATCTCCGACCGACTGAGCACCCGAACACT
CGATTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCC
AATCTAAGATCGGACCGAACCGAGGGCTA
Found at i:13591589 original size:26 final size:26
Alignment explanation
Indices: 13591559--13591608 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13591549 GACTTAGGCG
*
13591559 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
13591585 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
13591609 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:13591940 original size:159 final size:158
Alignment explanation
Indices: 13591582--13592074 Score: 343
Period size: 158 Copynumber: 3.1 Consensus size: 158
13591572 CCCAGTCTAA
* * * * * * * *
13591582 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGA-GTAAGATCAGATCGGACTGAAGGTTGTAACAGCAGGATTGAC
* * * * * * ** * * * * * *
13591646 AGCACGCAGGGGGGATCGGGCCAGTCCCCGGCTTGCTCATTTTGCCTCTCCGGCCGGCTGAGCAC
65 AGCACGAAAGGGGGACCGAGCCAATCCCCGACTTGAGCATTATACCTCTCCGGCTGACTCAGCGC
** ** *
13591711 CCGCACG-TCCGTTTTGTGGGTTGGCTTAG
130 CCAAACGCT-CGTTTCATGGGTTGACTTAG
* * ** ** * * * ** *
13591740 GCGTAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTGGCAGCGGGACTTG
1 GCATACGGAGTTCATTCCCA-GAGTAAG-ATCAGATCGGACTGAAGGTTGTAACAGCAGGA-TTG
* * * * * *
13591803 -CAGCACGCAAAGGGGGACCGAGTCAATCCTCGACTT-ACGCATTATGCCTCTTC-GATCGGCTC
63 ACAGCACG-AAAGGGGGACCGAGCCAATCCCCGACTTGA-GCATTATACCTCTCCGGCT-GACTC
* * *
13591865 AGTGCCCAAACGCTCGTTTCGTGGGTTGACTTAT
125 AGCGCCCAAACGCTCGTTTCATGGGTTGACTTAG
*
13591899 GCATACGGAGTTCATTCCCAGAGTAAGATCAGATCGGACTGAAGGTTGTAACAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGAGTAAGATCAGATCGGACTGAAGGTTGTAACAGCAGGATTGACA
* * * * * *
13591964 GCACGTAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTACCTCTCCGGCTGACTGAGCGCC
66 GCACGAAAGGGGGACCGAGCCAATCCCCGACTTGAGCATTATACCTCTCCGGCTGACTCAGCGCC
** *
13592029 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CAAACGCTCGTTTCATGGGTTGACTTAG
13592057 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13592075 ATGTCTAAGC
Statistics
Matches: 257, Mismatches: 65, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 137 0.53
159 113 0.44
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGAGTAAGATCAGATCGGACTGAAGGTTGTAACAGCAGGATTGACA
GCACGAAAGGGGGACCGAGCCAATCCCCGACTTGAGCATTATACCTCTCCGGCTGACTCAGCGCC
CAAACGCTCGTTTCATGGGTTGACTTAG
Found at i:13592513 original size:26 final size:26
Alignment explanation
Indices: 13592484--13592536 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13592474 GTTGACTTAG
13592484 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13592510 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13592536 G
1 G
13592537 ATCGGGTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13592694 original size:427 final size:427
Alignment explanation
Indices: 13591897--13592708 Score: 1239
Period size: 427 Copynumber: 1.9 Consensus size: 427
13591887 GGGTTGACTT
* * * *
13591897 ATGCATACGGAGTTCATTCCCAGAGTAAGATCAGATCGGACTGAAGGTTGTAACAGCAGGATTGA
1 ATGCATACGAAGTTCATTCCCAGAGTAAGATCAGATCGAACCGAAGGTTGCAACAGCAGGATTGA
* * *
13591962 TAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTACCTCTCCGGCTGACTGAGCG
66 CAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTACCTCTCCGACCGACTGAGCG
*
13592027 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGA
131 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGA
* * *
13592092 GTTCATTCCTAATCTAAGATCGGGTCGAACTGAGTGTTGCAGCAGTACGACCAGCAACAGGATCG
196 GTTCATTCCCAATCTAAGATCGGGTCGAACCGAGGGTTGCAGCAGTACGACCAGCAACAGGATCG
* * * * *
13592157 GTAGCACGGAGGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTACCTCTCTGGTCGGTGGAG
261 GTAGCACGGAGGGGGGGACCGGGCCGATCCCCGACTTATGCATTCTACCTCTCCGGTCAGTGGAG
* * *
13592222 CGCCCGTACACTCGTTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAG
326 CGCCCGCACACTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAG
13592287 CCGAACCGAGGGTTGTGGCAACAGGATCGGTAACGAA
391 CCGAACCGAGGGTTGTGGCAACAGGATCGGTAACGAA
* *** *
13592324 ATGCATACGAAGTTCATTCCCAGAGTAAGATCGGATCGAACCGAAGGTTGCGGTAGTAGGATTGA
1 ATGCATACGAAGTTCATTCCCAGAGTAAGATCAGATCGAACCGAAGGTTGCAACAGCAGGATTGA
* * * *
13592389 CAGCACGTAGGGGGGATCGGGTCGATCCCCGGA-TTGAGCATTCTGCCTCTCCGACCGACTGAGT
66 CAGCACGTAGGGGGGACCGGGCCGATCCCC-GACTTGAGCATTCTACCTCTCCGACCGACTGAGC
* * *
13592453 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGG
130 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
* * *
13592518 AGTTCATTCCCAGTCTAAGATCGGGTCGAACCGAGGGTTGCAGCAGTAGGACCAGCAATAGGATC
195 AGTTCATTCCCAATCTAAGATCGGGTCGAACCGAGGGTTGCAGCAGTACGACCAGCAACAGGATC
* * * *
13592583 GGTAGCACGGAGGGGGGGACCGGGCCGATCCCTGGCTTATGCATTCTGCCTCTCCGGTCAGTTGA
260 GGTAGCACGGAGGGGGGGACCGGGCCGATCCCCGACTTATGCATTCTACCTCTCCGGTCAGTGGA
* * *
13592648 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGC
325 GCGCCCGCACACTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
13592709 ATATTGAGTT
Statistics
Matches: 343, Mismatches: 41, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
427 341 0.99
428 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.24
Consensus pattern (427 bp):
ATGCATACGAAGTTCATTCCCAGAGTAAGATCAGATCGAACCGAAGGTTGCAACAGCAGGATTGA
CAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTACCTCTCCGACCGACTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGA
GTTCATTCCCAATCTAAGATCGGGTCGAACCGAGGGTTGCAGCAGTACGACCAGCAACAGGATCG
GTAGCACGGAGGGGGGGACCGGGCCGATCCCCGACTTATGCATTCTACCTCTCCGGTCAGTGGAG
CGCCCGCACACTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAG
CCGAACCGAGGGTTGTGGCAACAGGATCGGTAACGAA
Found at i:13593092 original size:26 final size:26
Alignment explanation
Indices: 13593062--13593114 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13593052 GCTGACTTAG
13593062 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13593088 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13593114 G
1 G
13593115 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13593379 original size:159 final size:159
Alignment explanation
Indices: 13593088--13593594 Score: 465
Period size: 159 Copynumber: 3.2 Consensus size: 159
13593078 CCCAGTCTAA
* * * * ** * *
13593088 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGAC-GCAGCAGGATCG
1 GCATAGGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATGGAGGGTT-ACGGTAGCAGGACCG
* * * *
13593150 ACAGCACGTC-GGGGGGACCGAGCCGATCCTCGGCTTATGCATTCTGCCTCTCCGGTCGACTGAG
64 ACAGCAC-ACAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAG
**
13593214 TTCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
128 CACCCGCATGCCCGTTTCGTGGGTTGGCTTAG
* ** *
13593246 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC-GAATGGAGGGTTGTGGTAGCGGGACCGA
1 GCATAGGGAGTTCATTCCATGTCTAAGCACCAGACCAG-ATGGAGGGTTACGGTAGCAGGACCGA
* * * * *
13593309 CAGCACACAGAGGGGGATCGAGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTCAAC
65 CAGCACACAG-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
* ** * *
13593374 ACCCGCACGTTCGTTTCGTGGGCTGACTTAG
129 ACCCGCATGCCCGTTTCGTGGGTTGGCTTAG
* * * * *
13593405 GCAT-GCGGAGTTAATTCCCA-GTCTAAG-ATCAGACCAGATTGAGGGTTACGGTAGTAGGATCG
1 GCATAG-GGAGTTCATT-CCATGTCTAAGCACCAGACCAGATGGAGGGTTACGGTAGCAGGACCG
* * * * * * *
13593467 ATAGCATACAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGATCGGTTGAGC
64 ACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
* *
13593532 GCCCGCATGCACACTCGTTTTGTGGGTTGGCTTAG
129 ACCCGCATG--C-C-CGTTTCGTGGGTTGGCTTAG
*
13593567 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATAGGGAGTTCATTCCATGTCTAAGC
13593595 TTACGGAGTT
Statistics
Matches: 275, Mismatches: 57, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 103 0.37
159 123 0.45
160 4 0.01
161 3 0.01
162 37 0.13
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCACCAGACCAGATGGAGGGTTACGGTAGCAGGACCGAC
AGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCAC
CCGCATGCCCGTTTCGTGGGTTGGCTTAG
Found at i:13593617 original size:26 final size:26
Alignment explanation
Indices: 13593570--13593619 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13593560 GGCTTAGGCA
*
13593570 TACGGAGTTCATTCCATGTCTAAGCT
1 TACGGAGTTCATTCCATATCTAAGCT
13593596 TACGGAGTTCATTTCCA-ATCTAAG
1 TACGGAGTTCA-TTCCATATCTAAG
13593620 ATAAAACTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCT
Found at i:13593967 original size:26 final size:26
Alignment explanation
Indices: 13593937--13593987 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13593927 TTGACTTACG
13593937 CATACGAAATTCA-TCCCAAGTCTAAT
1 CATACGAAATTCATTCCC-AGTCTAAT
* *
13593963 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAATTCATTCCCAGTCTAA
13593988 GATCAGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACGAAATTCATTCCCAGTCTAAT
Found at i:13594347 original size:159 final size:159
Alignment explanation
Indices: 13593963--13594462 Score: 467
Period size: 159 Copynumber: 3.2 Consensus size: 159
13593953 CAAGTCTAAT
** * **
13593963 CATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGACA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGATTGGATCGAGGGTTGTGGCAGCAGGATCGACA
* * * * ** * * *
13594027 GCATGC--AGGAGGGACCAGGCCAATCCCCGGCTTAAGCATTTTACCTCTCCGGCCGGCTGAGCA
65 GCACGCAGAGGA-GGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGGTCGGCTGAGCA
*
13594090 CCCGCACGCCCATTTCGTGGGTTGGCTTAGG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * ** ** * *
13594121 CATAGGGAGTTCATTCCATATCTAAGCCCCAG-TTGGATCGAGGGTTGTGGCAGTGGGA-CCAGT
1 CATACGGAGTTCATTCCATGTCTAAG-ATCAGATTGGATCGAGGGTTGTGGCAGCAGGATCGA-C
* * * **
13594184 AGCACGCAGAGGAGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGTG
64 AGCACGCAGAGGAGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGGTCGGCTGAGCA
* * * *
13594249 CCCGCACGCTCATTTTGTTGGTTGACTTATG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * * * *
13594280 CATATGGAGTTCATTCCCA-GTCTAAGATCGGATTGAACCAAGGGTTGTGGCAGCAGGATCGACA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGATTGGATCGAGGGTTGTGGCAGCAGGATCGACA
** * * * * * *
13594344 GCACATAG-GGGGGACCGGGCTGATCCTCGACTTGCGCATTCTACCTC-TCTGTCAGCTGAGCAC
65 GCACGCAGAGGAGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGGTCGGCTGAGCAC
* * *
13594407 CCGCATGCTCGTTTCATGGGTTGGCTTAGG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAGG
13594437 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
13594463 TATACGGAGT
Statistics
Matches: 268, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 60 0.22
158 80 0.30
159 116 0.43
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGATTGGATCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGAGGAGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGGTCGGCTGAGCACC
CGCACGCTCATTTCGTGGGTTGGCTTAGG
Found at i:13594385 original size:874 final size:876
Alignment explanation
Indices: 13592595--13594490 Score: 2188
Period size: 874 Copynumber: 2.2 Consensus size: 876
13592585 TAGCACGGAG
* * *
13592595 GGGGGGACCGGGCCGATCCCTGGCTTATGCATTCTGCCTCTCCGGTCAGTTGAGCGCCCGCA--C
1 GGGGGGACCGGGCTGATCCC-GGCTTGTGCATTCTGCCTCTTC-GTCAGTTGAGCGCCCGCATGC
* * ** * **
13592658 -GCTCATTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCATATTGAGTTCAT
64 ACCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTCAT
* * * * * * * * *
13592722 TCCCATTCAAAGATCAGACTGGACCGAGGGTTACGACTGCAGGACCAGCAGCAGGATCAGCAGCC
129 TCCCAATCTAAGATAAAACTGGACCAAGGGTTACGACAGCAAGACCAACAGCAGGATCAGCAGCA
* * * *
13592787 CGCAAGGAGGGACCGGGCTGATCCCCAACTTACGAATTCTGCCTTTCCTGCCGGCTGAACACCCG
194 CACAAGGAGGGACCGGGCCGATCCCCAACTTACGAATTCTGCCTCTCCGGCCGGCTGAACACCCG
* *
13592852 CAAGCTCATTTCCTGGGTTGGCTTAGGCATGCGAAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
259 CAAGCTCATTTCCTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* *
13592917 TGAGGGTTGTGGCAGCAGGACCGACAATCGGATCGGTAGCACGCAGAGTGGGATCGGGCTGATCC
324 CGAGGGTTGTGGCAGCA-G--CG--AATCGGATC-G-AGCACGCAGAGTGGGACCGGGCTGATCC
** ** * * *
13592982 TCGGCTTACGCATTATGCCTCTTTGACCATTCTTTCAGGCTGGCTGAACGACTGTACGCTCGTTT
382 TCGGCTTACGCATTATGCCTCTCCGACCAGCCTTCCAGGCTGGCTGAACGACCGCACGCTCGTTT
* * *
13593047 CATGGGCTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
447 CATGGGCTGACTTACGCATACAGAATTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
13593112 AAGATCAGATCGGACCGAGGGTTGACGCAGCAGGATCGACAGCACGTCGGGGGGACCGAGCCGAT
512 AAGATCAGACCGGACCGAGGGTTGACGCAGCAGGATCGACAGCACGTCGGAGGGACCGAGCCAAT
* * * * ** * *
13593177 CCTCGGCTTATGCATTCTGCCTCTCCGGTCGACTGAGTTCCCGCATGCCCGTTTCGTGGGTTGGC
577 CCCCGGCTTAAGCATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGC
* * *
13593242 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAATGGAGGGTTGTGGTAGCGGGACC
642 TTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAACCGAATCGAGGGTTGTGGCAGCGGGACC
* *
13593307 GACAGCACACAGAGGGGGATCGAGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTCA
707 GACAGCACACAGAGGAGGATCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCA
* * *
13593372 ACACCCGCACGTTCGTTTCGTGGGCTGACTTAGGCATGCGGAGTTAATTCCCAGTCTAAGATCAG
772 ACACCCGCACGCTCATTTCGTGGGCTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAG
*** * * * *
13593437 ACCAGATTGAGGGTTACGGTAGTAGGATCGATAGCATACA
837 ACCAGACCAAGGGTTACGGCAGCAGGATCGACAGCACACA
*
13593477 GGGGGGACCGGG-TCGATCCCCGGCTTGTGCATTCTGCCTCTTCGATCGGTTGAGCGCCCGCATG
1 GGGGGGACCGGGCT-GAT-CCCGGCTTGTGCATTCTGCCTCTTCG-TCAGTTGAGCGCCCGCATG
*
13593541 CACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTC
63 CAC-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTC
* * **
13593606 ATTTCCAATCTAAGATAAAACTGGACCAAGGGTTGC-AGCAGCAAGACCAACAGCAGGATTGGCA
127 ATTCCCAATCTAAGATAAAACTGGACCAAGGGTTACGA-CAGCAAGACCAACAGCAGGATCAGCA
*** * * * * ***
13593670 GCACACAGAGG-GGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTG
191 GCACACA-AGGAGGGACCGGGCCGATCCCCAACTTACGAATTCTGCCTCTCCGGCCGGCTGAACA
* * * * *
13593734 CCTGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
255 CCCGCAAGCTCATTTCCTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCC
13593799 AGACCGAGGGTTGTGGCAGTC-G-G-ATC-GA-C-AGCACGCAGAG-GGGTACCGGGCTGATCC-
320 AGACCGAGGGTTGTGGCAG-CAGCGAATCGGATCGAGCACGCAGAGTGGG-ACCGGGCTGATCCT
** ** * * * *
13593856 CTGGCTTGTGCATTATGCCTCTCCGGTCGGCCTCTCCAGTC-GGCTGAGCGCCCGCACGCTCGTT
383 C-GGCTTACGCATTATGCCTCTCCGACCAGCCT-TCCAGGCTGGCTGAACGACCGCACGCTCGTT
* *
13593920 TCATGGGTTGACTTACGCATAC-GAAATTCATCCCAAGTCTAATCATACGGAGTTCATTCCCAGT
446 TCATGGGCTGACTTACGCATACAG-AATTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
13593984 CTAAGATCAGACCGGATCGAGGGTTG-CGATAGCAGGATCGACAGCATG-CAGGAGGGACC-AGG
510 CTAAGATCAGACCGGACCGAGGGTTGACG-CAGCAGGATCGACAGCACGTC-GGAGGGACCGA-G
* *
13594046 CCAATCCCCGGCTTAAGCATTTTACCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCGTGGG
572 CCAATCCCCGGCTTAAGCATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCGTGGG
*** * *
13594111 TTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTTGGATCGAGGGTTGTGGCAGTG
637 TTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAACCGAATCGAGGGTTGTGGCAGCG
* * * *
13594176 GGACC-AGTAGCACGCAGAGGAGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTC
702 GGACCGA-CAGCACACAGAGGAGGATCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTC
*** * * * * * *
13594240 GGCTCAGTGCCCGCACGCTCATTTTGTTGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAA
766 GGCTCAACACCCGCACGCTCATTTCGTGGGCTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
* ** ** *
13594305 GATCGGA-TTGAACCAAGGGTTGTGGCAGCAGGATCGACAGCACATA
831 GATCAGACCAG-ACCAAGGGTTACGGCAGCAGGATCGACAGCACACA
* * * * *
13594351 GGGGGGACCGGGCTGATCCTCGACTTGCGCATTCTACCTC-TCTGTCAGCTGAGCACCCGCATG-
1 GGGGGGACCGGGCTGATCC-CGGCTTGTGCATTCTGCCTCTTC-GTCAGTTGAGCGCCCGCATGC
*
13594414 --CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-TATACGGAGTTCA
64 ACCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCT-TACGGAGTTCA
*
13594476 TTCCCAGTCTAAGAT
128 TTCCCAATCTAAGAT
13594491 TTTGAGCCAC
Statistics
Matches: 858, Mismatches: 133, Indels: 59
0.82 0.13 0.06
Matches are distributed among these distances:
868 1 0.00
869 71 0.08
873 31 0.04
874 455 0.53
875 6 0.01
877 1 0.00
878 2 0.00
879 3 0.00
881 1 0.00
882 52 0.06
883 3 0.00
884 1 0.00
885 2 0.00
886 225 0.26
887 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (876 bp):
GGGGGGACCGGGCTGATCCCGGCTTGTGCATTCTGCCTCTTCGTCAGTTGAGCGCCCGCATGCAC
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTCATTC
CCAATCTAAGATAAAACTGGACCAAGGGTTACGACAGCAAGACCAACAGCAGGATCAGCAGCACA
CAAGGAGGGACCGGGCCGATCCCCAACTTACGAATTCTGCCTCTCCGGCCGGCTGAACACCCGCA
AGCTCATTTCCTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
AGGGTTGTGGCAGCAGCGAATCGGATCGAGCACGCAGAGTGGGACCGGGCTGATCCTCGGCTTAC
GCATTATGCCTCTCCGACCAGCCTTCCAGGCTGGCTGAACGACCGCACGCTCGTTTCATGGGCTG
ACTTACGCATACAGAATTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGACGCAGCAGGATCGACAGCACGTCGGAGGGACCGAGCCAATCCCCGGCTT
AAGCATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATATCTAAGCCCCAACCGAATCGAGGGTTGTGGCAGCGGGACCGACAGCACA
CAGAGGAGGATCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAACACCCGCA
CGCTCATTTCGTGGGCTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCA
AGGGTTACGGCAGCAGGATCGACAGCACACA
Found at i:13594468 original size:26 final size:26
Alignment explanation
Indices: 13594438--13594488 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13594428 TGGCTTAGGC
13594438 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
13594464 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
13594489 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:13595203 original size:26 final size:26
Alignment explanation
Indices: 13595153--13595205 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13595143 GTTGACTTAG
*
13595153 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13595179 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13595205 G
1 G
13595206 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13595685 original size:26 final size:26
Alignment explanation
Indices: 13595656--13595707 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13595646 TTGGCTTAGT
*
13595656 CATACAGAGTTTATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
13595682 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
13595708 ATCGTACCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:13596062 original size:26 final size:26
Alignment explanation
Indices: 13596033--13596085 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13596023 GTTGACTTAG
13596033 GCATACGA-AGTTCATCCCCAGTCTAA
1 GCATA-GAGAGTTCATCCCCAGTCTAA
* *
13596059 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATCCCCAGTCTAA
13596085 G
1 G
13596086 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAGAGAGTTCATCCCCAGTCTAA
Done.