Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 73 of 138
Found at i:13596269 original size:26 final size:25
Alignment explanation
Indices: 13596229--13596280 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13596219 GTTGGCTTAG
13596229 GCATACAGAGCTCATTCCATGTCTAA
1 GCATACAGAGCTCATTCCA-GTCTAA
* *
13596255 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGCTCATTCCAGTCTAA
13596280 G
1 G
13596281 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGCTCATTCCAGTCTAA
Found at i:13603176 original size:73 final size:73
Alignment explanation
Indices: 13603041--13603183 Score: 198
Period size: 73 Copynumber: 2.0 Consensus size: 73
13603031 GTCTAAGCCC
* * * *
13603041 CAGCCGGACCGAGGATTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGCTCAATCCCCG
1 CAGCCGGACCGAGGATTGTGGCAGCAGGACCGACAGCACGTACAGGGGGACAGGCTCAATCCCCA
13603106 GCTTGTGG
66 GCTTGTGG
* * * *
13603114 CAGCCGGATCGAGGGTTGTGGCAGCAGGACTGACAGCACGTACAGGGGGATCAGGC-CGATCCCC
1 CAGCCGGACCGAGGATTGTGGCAGCAGGACCGACAGCACGTACAGGGGGA-CAGGCTCAATCCCC
13603178 AGCTTG
65 AGCTTG
13603184 CGCATTATGC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
73 57 0.93
74 4 0.07
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.13
Consensus pattern (73 bp):
CAGCCGGACCGAGGATTGTGGCAGCAGGACCGACAGCACGTACAGGGGGACAGGCTCAATCCCCA
GCTTGTGG
Found at i:13604762 original size:315 final size:313
Alignment explanation
Indices: 13604152--13604961 Score: 986
Period size: 315 Copynumber: 2.6 Consensus size: 313
13604142 CCCAGTCTAA
* * * * * * *
13604152 GCATACGAAGTTCATTCCCAGTCCAAGATCAGACCGGATCGAGGGTTG-CGACAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGTAG-CAGCAAGATCGAT
* *
13604216 AGCACGCAGGGGGGA-TCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
64 AGCACGCA-GGGGGACT-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC-
* * * * * *
13604280 TCCACACGCCTGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCA
126 CCCGCACGCC-ATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAGACA
* * *
13604345 GGACCGAGGGTTGTGGTAGCGGGACCAGCAGCACACAGAGGGGGACCCGACCAATCCCCGACTTG
190 GGACCAAGGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGGGACCCGACCAATCCCCGACTTA
* * * *
13604410 CGCATTATGCTTGTCCTGCCGGCTCAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAG
255 CGCATTATGCCTCTCCAGCCGGCTCAGCACCTGCACGCTCGTTTCATGGGTTGACTTAG
* * *
13604469 GCATACGGAGTTCATTCACAGTATAAGATCAGACCAGACCGAGGGTTGTAGCAGCATGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGTAGCAGCAAGATCGATA
* * * * *
13604534 GCATGCAGGGGGACTAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCC
65 GCACGCAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC-CCC
* * * *
13604599 GCACGTCCATTTCGTGGCTTGGTTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCA-ACCGGA
129 GCACG-CCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAGACAGGA
* * * * ** * *
13604663 CCAAGGGTTGTGGCAGCGGGACCAGCAGCACGCGGAGGGGGACCGGGCTGATCTCTGACTTACGC
193 CCAAGGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGGGACCCGACCAATCCCCGACTTACGC
* * *
13604728 ATTATGCCTCTCCAGCTGGCTCAGCGCTTGCACGCTCGTTTCATGGGTTGACTTAG
258 ATTATGCCTCTCCAGCCGGCTCAGCACCTGCACGCTCGTTTCATGGGTTGACTTAG
* * *
13604784 GCATACGGAGTTCATTCCCAATCTAAGATC-G---GACCGAGGGTTGTAGCAGCAAGATTGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGTAGCAGCAAGATCGATAG
* * * * *
13604845 CACGCAAGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGTCTGAGCGCCG
66 CACGC-AGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCCCCG
*
13604910 CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CACGC-CATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
13604962 CCATACTGAG
Statistics
Matches: 423, Mismatches: 65, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
309 1 0.00
310 80 0.19
311 48 0.11
314 1 0.00
315 134 0.32
316 96 0.23
317 62 0.15
318 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (313 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGTAGCAGCAAGATCGATAG
CACGCAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCCCCGC
ACGCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAGACAGGACCA
AGGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGGGACCCGACCAATCCCCGACTTACGCATT
ATGCCTCTCCAGCCGGCTCAGCACCTGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:13604967 original size:26 final size:26
Alignment explanation
Indices: 13604937--13604987 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13604927 TTGGCTTAGG
13604937 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
*
13604963 CATACTGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
13604988 GGTCAGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:13605632 original size:158 final size:156
Alignment explanation
Indices: 13605158--13605659 Score: 551
Period size: 158 Copynumber: 3.2 Consensus size: 156
13605148 CCCAGTCTAA
*
13605158 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGAT
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * * *
13605222 AGCACGCAGGAGGGACCGGGCCGATCCCCGACTTCCGCATTCTTCCTCTCCGGCTGGCTGACCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCC-GCCGGCT-AACGC
*
13605287 CCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** ** * * * * *
13605316 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-TTGGACCAAGGGTTGTGGCAGCGGGATCGGT
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAT
* * * * *
13605380 AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGACCAGCTCAACA
65 AGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCG-CCGGCT-AACG
* ** *
13605445 CCCGCACGCTCATTTTGTGGGTTGACTTAG
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
13605475 GCATACGAAGTTCACTCC-TAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAT
* * * * *
13605539 AGCACGCAGGGGGGACCGGGTCGATCCTTGGCTTGCGCATTCTACCTCTCCGTTCGGCTAAGCGT
65 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCG-CCGGCTAA-CGC
*
13605604 CTGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
13605633 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
13605660 CATATAGAGT
Statistics
Matches: 275, Mismatches: 61, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 146 0.53
159 124 0.45
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGCCGGCTAACGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13606074 original size:26 final size:26
Alignment explanation
Indices: 13606024--13606074 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
13606014 TGACTTAGGT
* * *
13606024 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAATATAAGC
*
13606050 ATACAGAGTTCATTCCCAATATAAG
1 ATACAGAGTTCATCCCCAATATAAG
13606075 ATTGGACTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATATAAGC
Found at i:13606441 original size:159 final size:159
Alignment explanation
Indices: 13606133--13606548 Score: 383
Period size: 159 Copynumber: 2.6 Consensus size: 159
13606123 GATCAGGCCA
* * *
13606133 ATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCATGCCCATTTCGTGGGTTG
1 ATCCCTGGCTTGCGCATTATGCCTCTTCGATCGACTCAGCACCCGCATGCCCATTTCGTGGGTTG
* * * * * * *
13606198 GCTTAGGCATAGGGAGTTCATTCCACGTCTATGCCCTAGCTGGATTGAGGGTTATGGCAGCGAGA
66 ACTTAGGCATACGGAGCTCATTCCACGTCTAAGACCTAGATGGACTGAGGGTTATGGCAGCGAGA
* *
13606263 CCGGCAACACGCAGAGGGGGATCGAGTCG
131 CCGACAACACACAGAGGGGGATCGAGTCG
* * * *
13606292 AT-CCTCGGCTTGCGCGTTATGCCTCTTCGGTC-AGCTCAGCACCCGCATGCTCATTTTGTGGGT
1 ATCCCT-GGCTTGCGCATTATGCCTCTTCGATCGA-CTCAGCACCCGCATGCCCATTTCGTGGGT
* *
13606355 TGACTTAGGCATACGGAGCTCATTCC-CAGTCTAAGATC-AGATCGGACTGAGGGTTGTGGCAGC
64 TGACTTAGGCATACGGAGCTCATTCCAC-GTCTAAGACCTAGAT-GGACTGAGGGTTATGGCAGC
** * * * *
13606418 -AGGATTGACAGCATACAGGGGGGGATCGGGTCG
127 GA-GACCGACAACACACAGAGGGGGATCGAGTCG
* * * * * * ** ** * * *
13606451 ATCCCTGGCTTGTGCATTCTACCTCTCCGATAGACTGAGTGCTTGCACGCTCGTTTCGTGGGTTG
1 ATCCCTGGCTTGCGCATTATGCCTCTTCGATCGACTCAGCACCCGCATGCCCATTTCGTGGGTTG
* * * *
13606516 GCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 ACTTAGGCATACGGAGCTCATTCCACGTCTAAG
13606549 CATACAGAGT
Statistics
Matches: 206, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 9 0.04
159 193 0.94
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
ATCCCTGGCTTGCGCATTATGCCTCTTCGATCGACTCAGCACCCGCATGCCCATTTCGTGGGTTG
ACTTAGGCATACGGAGCTCATTCCACGTCTAAGACCTAGATGGACTGAGGGTTATGGCAGCGAGA
CCGACAACACACAGAGGGGGATCGAGTCG
Found at i:13607164 original size:868 final size:870
Alignment explanation
Indices: 13605105--13607408 Score: 2926
Period size: 868 Copynumber: 2.6 Consensus size: 870
13605095 CTGGGCACCC
*
13605105 GCACGCTCATTTCGTGGGTTGACTTAGGTATACAGAGTTCATCCCCAGTCTAAGCATAC-GAAGT
1 GCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACAG-AGT
* *
13605169 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGATAGCACGCAGGAG
65 TCATTCCCAATCTAAGATCGGACCGGATCGAGGGTT-----AGC--G---G-TAGCACG-AGG-G
* * * * * * * * *
13605234 GGACCGGGCCGATCCCCGACTTCCGCATTCTTCCTCTCCG-GCTGGCTGACCGCCCGCACGCCCG
117 GGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTCGATC-GACTGAGCGCCCGCACGCCCA
* * * * ***
13605298 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTTGGACCAAGGGTT
181 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCTGGATTGAGGGTT
* *
13605363 GTGGCAGCGGGATCGGTAGCACGCAGAGGGGGATCGGGCCGATCC-CTGGCTTACGCATTATGCC
246 ATGGCAGCGGGATCGGTAGCACGCAGAGGGGGATCGAGCCGATCCTC-GGCTTACGCATTATGCC
** * * *
13605427 TCTCCGACCAGCTCAACACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCACTC
310 TCTCCGGTCAGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * **
13605492 CTAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACC
375 CCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATCGACAGCATACAGGGGGGACC
* * * *
13605556 GGGTCGATCCTTGGCTTGCGCATTCTACCTCTCCGTTCGGCTAAGCG-TCTGCACGCTCGTTTCA
439 GGGTCGATCCTTGGCTTGCGCATTCTACCTCTCCGATAGGCTGAGCGCT-TGCACGCTCGTTTCG
*
13605620 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATCCCAATCCAAG
503 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATCCCAATCCAAG
13605685 ATCGGACCGGACCAAGGGTTGTGACAGTAGGACCAACAGTAGGACCAGCAGCAGGATCGACAGCA
568 ATCGGACCGGACCAAGGGTTGTGAC---AGG----ACAGTAGGACCAGCAGCAGGATCGACAGCA
* * *
13605750 CGCAGAGGAGGTCCGGCCGATCCCCAGTTTACTCATTCTACCTCTCCGACCGCTGAGTGCCCGCA
626 CGCAGAGGAGGACCGGCCGATCCCCAGTTTACTCATTCTACCTCTCCGACAGCTGAGTGCCCACA
* *
13605815 CGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCG
691 CGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCG
* *** * * ** *
13605880 AGGGTTGTTGCAACAGGACCGATAGCTGGATTGGCAGCATACAGAGGGGGATTGGGCTGATCCCC
756 AGGGTTGTTGCAACAGGACCGACAGCTGGATCAACAGCATACAAAAGGGGACCGAGCTGATCCCC
* * *
13605945 AGCTTGCATATTATGCCTCTTTGGTCGGCCTCTCGGCCGACTGAGCGTCT
821 AGCTTGCATATTATGCCTCTTCGATCGGCCTCTCGGCCGACTGAGCGCCT
13605995 GCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
* * * *
13606060 CATTCCCAATATAAGATTGGACTGGACCGAGGGTTACGGTAGCAGGATCGGTAGCACGAGGGGGA
66 CATTCCCAATCTAAGATCGGACCGGATCGAGGG-T----T---A-G--CGGTAGCACGAGGGGGA
* * * * *
13606125 TCAGGCCAATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCATGCCCATTTC
120 CCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCATTTC
* *
13606190 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTATGCCCTAGCTGGATTGAGGGTTATGG
185 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCTGGATTGAGGGTTATGG
* * * * * * * *
13606255 CAGCGAGACCGGCAACACGCAGAGGGGGATCGAGTCGATCCTCGGCTTGCGCGTTATGCCTCTTC
250 CAGCGGGATCGGTAGCACGCAGAGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTCC
* *
13606320 GGTCAGCTCAGCACCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGT
315 GGTCAGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
13606385 CTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATTGACAGCATACAGGGGGGGATCGGGTC
380 CTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCATACA-GGGGGGACCGGGTC
* * * *
13606450 GATCCCTGGCTTGTGCATTCTACCTCTCCGATAGACTGAGTGCTTGCACGCTCGTTTCGTGGGTT
444 GATCCTTGGCTTGCGCATTCTACCTCTCCGATAGGCTGAGCGCTTGCACGCTCGTTTCGTGGGTT
* *
13606515 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATCCCAATCTAAGATCGGA
509 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATCCCAATCCAAGATCGGA
* * * *
13606580 CTGGACCAAGGG-T-T-AC-GG-TAGTAGGACCAGTAGCAGGATCGACAGCACGTAGAGGAGGAC
574 CCGGACCAAGGGTTGTGACAGGACAGTAGGACCAGCAGCAGGATCGACAGCACGCAGAGGAGGAC
** * * *
13606640 CGGGCCGATCCCTGGTTTACTCATTCTACCTCTCCGATCAGCTGAGTGCCTACACTCTTGTTTCG
639 C-GGCCGATCCCCAGTTTACTCATTCTACCTCTCCGA-CAGCTGAGTGCCCACACGCTTGTTTCA
13606705 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTTGC
702 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTTGC
* * **
13606770 AGCAGGACCGACAGCTGGATCAACAGCATGCAAAAGGGGACCGAGCTGATCCCCAGCTTGTGTAT
767 AACAGGACCGACAGCTGGATCAACAGCATACAAAAGGGGACCGAGCTGATCCCCAGCTTGCATAT
*
13606835 TATGCCTCTTCGATCGGCCTCTTCGGCCTACTGAGCGCCT
832 TATGCCTCTTCGATCGGCCTC-TCGGCCGACTGAGCGCCT
* **
13606875 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGCACAGAGTT
1 GCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
* *
13606940 CATTCTCAATCTAAGATCGGACCGGATCAAGGGTT-GCGGTAGCACGAGGGGGACCGGGCCGATC
66 CATTCCCAATCTAAGATCGGACCGGATCGAGGGTTAGCGGTAGCACGAGGGGGACCGGGCCGATC
* * * *
13607004 CCTGGCTTACGCATTCTGCCTCTTCGATCGACTAAGCACCCGTACGCCCATTTTGTGGGTTGGCT
131 CCTGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCT
* * * *
13607069 TAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAACCGGATTGAGGGTTATGACAGTGGGATCG
196 TAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCTGGATTGAGGGTTATGGCAGCGGGATCG
* * * * **
13607134 ATAGCACGCAGAGAGGGATCGAGCCGATCCTTGGCTTATGCATTATGCCTCTCCGGTTGGCTCAG
261 GTAGCACGCAGAGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTCCGGTCAGCTCAG
* * * * *
13607199 CACCCGCACACTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGA
326 CACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
13607264 CCGAACCGAGGGTTGTGGTAGCAGGATCGAGAGCCTA-AGGGGGGACCAGGCCGAT-CTTCGGCT
391 CCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCATACAGGGGGGACCGGGTCGATCCTT-GGCT
* * * ** *
13607327 TGCGCATTCTGCCTCTCCGATTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGCTT-GGCAT
455 TGCGCATTCTACCTCTCCGATAGGCTGAGCGCTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
*
13607391 AGGGAGTTCATTCCATGT
520 ACGGAGTTCATTCCATGT
13607409 GTAACCCCAG
Statistics
Matches: 1233, Mismatches: 163, Indels: 61
0.85 0.11 0.04
Matches are distributed among these distances:
865 23 0.02
866 68 0.06
867 1 0.00
868 282 0.23
870 1 0.00
875 1 0.00
877 39 0.03
878 33 0.03
879 157 0.13
880 105 0.09
882 2 0.00
886 2 0.00
887 1 0.00
888 263 0.21
889 147 0.12
890 97 0.08
891 3 0.00
893 4 0.00
894 2 0.00
895 1 0.00
896 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (870 bp):
GCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
CATTCCCAATCTAAGATCGGACCGGATCGAGGGTTAGCGGTAGCACGAGGGGGACCGGGCCGATC
CCTGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCTGGATTGAGGGTTATGGCAGCGGGATCG
GTAGCACGCAGAGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTCCGGTCAGCTCAG
CACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCATACAGGGGGGACCGGGTCGATCCTTGGCTT
GCGCATTCTACCTCTCCGATAGGCTGAGCGCTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATCCCAATCCAAGATCGGACCGGACCAAGGG
TTGTGACAGGACAGTAGGACCAGCAGCAGGATCGACAGCACGCAGAGGAGGACCGGCCGATCCCC
AGTTTACTCATTCTACCTCTCCGACAGCTGAGTGCCCACACGCTTGTTTCATGGGTTGGCTTAGG
CATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTTGCAACAGGACCGACAG
CTGGATCAACAGCATACAAAAGGGGACCGAGCTGATCCCCAGCTTGCATATTATGCCTCTTCGAT
CGGCCTCTCGGCCGACTGAGCGCCT
Found at i:13607379 original size:157 final size:158
Alignment explanation
Indices: 13607156--13607718 Score: 500
Period size: 157 Copynumber: 3.6 Consensus size: 158
13607146 GAGGGATCGA
** * *
13607156 GCCGATCCTT-GGCTTATGCATTATGCCTCTCCGGTTGGCTCAGCACCCGCACACTCATTTCGTG
1 GCCGAT-CTTCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTG
* *
13607220 GGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGTAG
65 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAG
13607285 CAGGATCGAGAGC-CTAAGGGGGGACCAG
130 CAGGATCGAGAGCACTAAGGGGGGACCAG
* * * * *
13607313 GCCGATCTTCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCGCCCGCACGCTCGTTTCGTGG
1 GCCGATCTTCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTGG
* * *** * * * *
13607378 GTT-AGCTT-GGCATAGGGAGTTCATT-CCATGTGTAACCCCAG-TCGGACCAAGGGTTGTGGCA
66 GTTGA-CTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGAACCGAGGGTTGTGGCA
* * ***
13607439 GCGGGACCG-GTAGCAC-ACAGAGGGGGATTGG
129 GCAGGATCGAG-AGCACTA-AG-GGGGGACCAG
* * * * * * *
13607470 GCCGATC-CCTAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGGACGCTCATTTTGTG
1 GCCGATCTTC-GGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTG
* * * *
13607534 GGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAA
65 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAG
* * * * * *
13607599 TAGGATGGACAGCGCGT-AGGGGGGAGCTG
130 CAGGATCGAGAGCAC-TAAGGGGGGACCAG
* * * * * ** * * *
13607628 GCCGATCCTCGGCTTGCG-ATTCTGCCTCTCCGGCTGCCTGAGCGCCCATACGTTCGTTTCGTCG
1 GCCGATCTTCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTGG
*
13607692 GTTGGCTTAGGCATATGGAGTTCATTC
66 GTTGACTTAGGCATATGGAGTTCATTC
13607719 TATGTCTAAG
Statistics
Matches: 314, Mismatches: 76, Indels: 32
0.74 0.18 0.08
Matches are distributed among these distances:
154 1 0.00
155 30 0.10
156 30 0.10
157 180 0.57
158 44 0.14
159 29 0.09
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.26
Consensus pattern (158 bp):
GCCGATCTTCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTGG
GTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGC
AGGATCGAGAGCACTAAGGGGGGACCAG
Found at i:13607537 original size:314 final size:316
Alignment explanation
Indices: 13606987--13607726 Score: 887
Period size: 314 Copynumber: 2.3 Consensus size: 316
13606977 GGTAGCACGA
* * * * * * * *
13606987 GGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTCGATCGACTAAGCACCCGTACGCC
1 GGGGGACCAGGCCGATCTC-GGCTTGCGCATTCTGCCTCTCCGATTGACTGAGCGCCCGTACGCT
* * * ***
13607052 CATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAACCGGATTGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATACCCCAACCGGACCAAGGG
* * * * * *
13607117 TTATGACAGTGGGATCGATAGCACGCAGAGAGGGATCGAGCCGATCCTTGGCTTATGCATTATGC
130 TTATGACAGCGGGACCGATAGCACACAGAGAGGGATCGAGCCGATCCCTAGCTTACGCATTATGC
*
13607182 CTCTCCGGTTGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATT
195 CTCTCCGGTCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATT
* * * *
13607247 CCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGTAGCAGGATCGAGAGC-C-TAAG
260 CCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCAACAGGATCGACAGCGCGT-AG
** *
13607303 GGGGGACCAGGCCGATCTTCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCGCCCGCACGCT
1 GGGGGACCAGGCCGATC-TCGGCTTGCGCATTCTGCCTCTCCGATTGACTGAGCGCCCGTACGCT
* * **
13607368 CGTTTCGTGGGTTAGCTT-GGCATAGGGAGTTCATTCCATGTGTA-ACCCCAGTCGGACCAAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATACCCCAACCGGACCAAGGG
* * * * * * *
13607431 TTGTGGCAGCGGGACCGGTAGCACACAGAGGGGGATTGGGCCGATCCCTAGCTTGCGCATTATGC
130 TTATGACAGCGGGACCGATAGCACACAGAGAGGGATCGAGCCGATCCCTAGCTTACGCATTATGC
* ** * * *
13607496 CTCTTCGGTCGGCTCAGTGCCCGGACGCTCATTTTGTGGGTTGACTTATGCATATGGAGTTCATT
195 CTCTCCGGTCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATT
* * *
13607561 CCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAATAGGATGGACAGCGCGTAG
260 CCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCAACAGGATCGACAGCGCGTAG
* * ** * * *
13607618 GGGGGAGCTGGCCGATCCTCGGCTTGCG-ATTCTGCCTCTCCGGCTGCCTGAGCGCCCATACGTT
1 GGGGGACCAGGCCGAT-CTCGGCTTGCGCATTCTGCCTCTCCGATTGACTGAGCGCCCGTACGCT
* * *
13607682 CGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCTATGTCTA
65 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
13607727 AGCATACGGA
Statistics
Matches: 357, Mismatches: 62, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
314 212 0.59
315 75 0.21
316 69 0.19
317 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.26
Consensus pattern (316 bp):
GGGGGACCAGGCCGATCTCGGCTTGCGCATTCTGCCTCTCCGATTGACTGAGCGCCCGTACGCTC
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATACCCCAACCGGACCAAGGGT
TATGACAGCGGGACCGATAGCACACAGAGAGGGATCGAGCCGATCCCTAGCTTACGCATTATGCC
TCTCCGGTCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATTC
CCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCAACAGGATCGACAGCGCGTAG
Found at i:13607731 original size:26 final size:26
Alignment explanation
Indices: 13607702--13607753 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13607692 GTTGGCTTAG
* * * *
13607702 GCATATGGAGTTCATTCTATGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
13607728 GCATACGGAGCTCATTCCAAGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
13607754 TATTTTGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCAAGTCTAA
Found at i:13608461 original size:26 final size:26
Alignment explanation
Indices: 13608425--13608477 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13608415 GTTGACTTAG
13608425 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13608451 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13608477 G
1 G
13608478 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13608830 original size:26 final size:26
Alignment explanation
Indices: 13608794--13608845 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13608784 TTGACATACT
*
13608794 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
13608820 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
13608846 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:13609181 original size:159 final size:158
Alignment explanation
Indices: 13608826--13609192 Score: 353
Period size: 159 Copynumber: 2.3 Consensus size: 158
13608816 TAAGCATACA
* * * * *
13608826 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTAGCGGTAGCAGGACCAGCAGCACACA
* * * *** * * *
13608891 GGGGGGACCGGGCCGATCCCCAACTTGTACATTCTACCTCTCCGGTCGGCTGAGCTTCCGCATGC
66 GGGGGGACCAGGCCGATCCCCAACTTGCACATTATACCTCTCCAACCGGCTCAGATGCCGCATGC
*
13608956 CCGTTTCATGGGTTGGCTTAGGCATAGG
131 CCGTTTCATGGGTTGACTTAGGCATAGG
** * * * * *
13608984 GAGTTCATT-CCATGTCTAAGCCCCAG-CTAGACTGAGGGTAGTGGTAGCGGGACCAGCAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTAGCGGTAGCAGGACCAGCAGCACA
* * * * * * *
13609047 CAGAGGGGGACCAGGTCGATCCTCGACTTGCGCATTATGCGTCTTCAACCGGCTCA-ATGCCTGC
64 CAG-GGGGGACCAGGCCGATCCCCAACTTGCACATTATACCTCTCCAACCGGCTCAGATGCC-GC
* * * *
13609111 ATGCTCGTTTCGTGGGTTGACTTATGCATATG
127 ATGCCCGTTTCATGGGTTGACTTAGGCATAGG
* * *
13609143 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTAGCGGTAGCAG
13609193 CATCGATAGC
Statistics
Matches: 161, Mismatches: 42, Indels: 11
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.02
158 53 0.33
159 102 0.63
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTAGCGGTAGCAGGACCAGCAGCACACA
GGGGGGACCAGGCCGATCCCCAACTTGCACATTATACCTCTCCAACCGGCTCAGATGCCGCATGC
CCGTTTCATGGGTTGACTTAGGCATAGG
Found at i:13609298 original size:158 final size:157
Alignment explanation
Indices: 13608819--13609320 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 157
13608809 CCCAGTCTAA
* * *
13608819 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * * ** * * * *
13608883 AGCACACAGGGGGGACCGGGCCGATCCCCAACTTGTACATTCTACCTCTCCGGTCGGCTGAGCT-
65 AGCACGCAGGGGGGA-CGAGCCGATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGCTAAG-TG
* *
13608947 TCCGCATGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCATGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * * *
13608977 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACTGAGGGTAGTGGTAGCGGGA-CCAG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGA-
* * * * * **
13609040 CAGCACGCAGAGGGGGACCAGGTCGATCCTCGACTTGCGCATTATGCGTCTTCAACCGGCTCAA-
64 TAGCACGCAG-GGGGGACGA-GCCGATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGCT-AAG
* * * *
13609104 TGCCTGCATGCTCGTTTCGTGGGTTGACTTAT
126 TGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * *
13609136 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGCATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAT
* ** *
13609200 AGCACGTAGGGGGGATCGAGCCGGGCCTCGACTTGCGCATTCTGCCTCTTCGGCCGACTAAGTGC
65 AGCACGCAGGGGGGA-CGAGCCGATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGCTAAGTGC
* * *
13609265 CCACACGCTCGTTTTATGGGTTGGCTTAG
129 CCGCATGCTCGTTTCATGGGTTGGCTTAG
*
13609294 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13609321 CGTATGGAGT
Statistics
Matches: 264, Mismatches: 67, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 9 0.03
158 139 0.53
159 110 0.42
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACGCAGGGGGGACGAGCCGATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGCTAAGTGCCC
GCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:13609882 original size:26 final size:26
Alignment explanation
Indices: 13609846--13609898 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13609836 GTTGGCTTAG
*
13609846 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
13609872 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
13609898 G
1 G
13609899 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:13610904 original size:159 final size:158
Alignment explanation
Indices: 13610606--13611145 Score: 511
Period size: 159 Copynumber: 3.4 Consensus size: 158
13610596 CCCAGTCTAA
* ** * * *
13610606 GCATACGGAGTTCATTCCA-ATCTAAGATC-AGGCCAGACCGAGGGTTGTGGCAGTAGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTA-GCCGGACCGAGGGTTGTGGCAGCAGATCGACA
* * * ** * ** * * *
13610669 GCACG--TAGGGGGATCGAGATGATCCCCGGCTTGCGTATTCTGCCTCTCCGA-TCGACTGAA-A
65 GCACGAAGAGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACT-GGCTCAACA
** * * *
13610730 GCCCGCATGCCCATTTAATGGGTTGGCTTAG
129 -CCCGCACACTCATTTCATGGGTTGACTTAG
* * *
13610761 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCTGCGAGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGC-AGATCGACA
* * * *
13610826 GCACGTAGAGGGGGATCGGGCCGATCCCCAGCTTGCATATTATGCCTCTCCGACTGGGTCAACAC
65 GCACGAAGAGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACTGGCTCAACAC
* *
13610891 CCGTACACTCATTTCGTGGGTTGACTTAG
130 CCGCACACTCATTTCATGGGTTGACTTAG
** * *
13610920 GCATACGGAGTTCATTCTCA-GTCTAAG-ATTGGACCGGACTGAGGGTTGTGGCAGCAGAATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGCAG-ATCGA
* * ** * * *
13610983 TAGCACGAAGGGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACTGGCTGAGC
63 CAGCACGAAGAGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACTGGCTCAAC
* * * *
13611048 ATCCGCACGCTCGTTTCATGGGTTGCCTTAG
128 ACCCGCACACTCATTTCATGGGTTGACTTAG
** *
13611079 GCATACAAAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGC-AGATCGACA
13611144 GC
65 GC
13611146 GGGATCAACA
Statistics
Matches: 314, Mismatches: 58, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
155 18 0.06
156 27 0.09
157 13 0.04
158 6 0.02
159 242 0.77
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGATCGACAG
CACGAAGAGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACTGGCTCAACACC
CGCACACTCATTTCATGGGTTGACTTAG
Found at i:13611293 original size:26 final size:26
Alignment explanation
Indices: 13611263--13611315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13611253 GTTGACTTAG
*
13611263 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13611289 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13611315 G
1 G
13611316 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13611575 original size:26 final size:26
Alignment explanation
Indices: 13611539--13611591 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13611529 GAGGGTTGCG
*
13611539 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13611565 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13611591 G
1 G
13611592 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13612128 original size:26 final size:26
Alignment explanation
Indices: 13612092--13612144 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13612082 GTTAGCTTAG
*
13612092 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13612118 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13612144 G
1 G
13612145 ATCGAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13612380 original size:344 final size:342
Alignment explanation
Indices: 13611698--13612450 Score: 1017
Period size: 344 Copynumber: 2.2 Consensus size: 342
13611688 TCTCTAGCCG
* * * * *
13611698 ACCTCTCCGACCGGCAGAGCGGCCACACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCA
1 ACCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCA
* * * *
13611763 TCTCCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCA
65 TCCCCAACCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGAACCGAGGGTTGCGGCA
* *
13611828 GTAAGATCGGTAGCACACAAGGGGGACCAAGCCAATCTCCGGCTTGCGCATTCTGCCTCTCCAGC
130 GTAAGATCAGTAGCACACAAGGGGGACCAAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGC
*** * * * *
13611893 CGGTTGAGTGCCCGCACGCCCGTTTCATGTGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTA
195 CGACCGAGTGCCCGCACACCCATTTCATGTGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
* * * * * * *
13611958 AGCCCTAACCAGATCGAGGGTTGTGGTAGTGGGACCGATAGCACGTAGAGGGGGACCAGGTCGAT
260 AGCCCCAACCAGATCGAGGATTGTGGCAGCGAGACAGACAGCACGTAGAGGGGGACCAGGTCGAT
*
13612023 CCTCGGCTTGTGCATTCT
325 CCCCGGCTTGTGCATTCT
* *
13612041 ACCTCTTCGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTAGCTTAGGCATATGGAGTTCA
1 ACCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCA
* * *
13612106 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGAACTGAGGGTTGCGGCA
65 TCCCCAACCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGAACCGAGGGTTGCGGCA
* * * *
13612171 GTAAGATTAGTAGCACACAGGGGGGACCAAGCCGATCCCCCGGCTTGCGCATTCTGCCTCT-CTG
130 GTAAGATCAGTAGCACACAAGGGGGACCAAGCCAAT-CCCCGGCTTGCGCATTCTGCCTCTCCAG
13612235 ACCGACCGAGTGCCCGCACACCCATTTCATGTGTTGGCTTAGGCATAAGGAGTTCATTCCATGTC
194 -CCGACCGAGTGCCCGCACACCCATTTCATGTGTTGGCTTAGGCATAAGGAGTTCATTCCATGTC
** *
13612300 TAAGCCCCAGTCGGA-CTGAGGATTGTGGCAGCGAGACTAG-CAGCACGTAGAGGGGGACCAGGT
258 TAAGCCCCAACCAGATC-GAGGATTGTGGCAGCGAGAC-AGACAGCACGTAGAGGGGGACCAGGT
13612363 CGATCCCCGGCTTGTGCATTCT
321 CGATCCCCGGCTTGTGCATTCT
* * * ** * *
13612385 GCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTGCGTGGGTTGGATTAGGCATACGGAGTTCA
1 ACCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCA
13612450 T
65 T
13612451 TCCTAGTCTA
Statistics
Matches: 357, Mismatches: 48, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
343 149 0.42
344 207 0.58
345 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (342 bp):
ACCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCAT
CCCCAACCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGAACCGAGGGTTGCGGCAG
TAAGATCAGTAGCACACAAGGGGGACCAAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGCC
GACCGAGTGCCCGCACACCCATTTCATGTGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
GCCCCAACCAGATCGAGGATTGTGGCAGCGAGACAGACAGCACGTAGAGGGGGACCAGGTCGATC
CCCGGCTTGTGCATTCT
Found at i:13613365 original size:26 final size:26
Alignment explanation
Indices: 13613328--13613380 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13613318 GTTGACTTAG
*
13613328 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13613354 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
13613380 G
1 G
13613381 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13613709 original size:26 final size:26
Alignment explanation
Indices: 13613672--13613724 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13613662 GTTGGCTTAG
13613672 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13613698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13613724 G
1 G
13613725 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13614620 original size:158 final size:159
Alignment explanation
Indices: 13614342--13614728 Score: 359
Period size: 158 Copynumber: 2.4 Consensus size: 159
13614332 TTGCGCATCC
* * * * * * * * * * *
13614342 TGCCTCTCTGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTACGCATAGGGAGTTA
1 TGCCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTC
* ** ** * * * *
13614407 ATTCC-ATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCATGC-TGAG
66 ATTCCTA-GTCTAAGATCGGA-CCAGACCAAGGGTTGTGACAGCAGGACCGAAAGCATGCAAG-G
* * * *
13614469 GGTGATCGGGTCGATCCCCGACTTACGCATTA
128 GGGGATCAGGCCGATCCCCGACTTACGCACTA
* * *
13614501 TGCCTTTCCGATCGACTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGC-CACGGAGTTC
1 TGCCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTC
* *
13614565 ATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGTGATAGCAGGATCGAAAGCATGCAAGGGGG
66 ATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGTGACAGCAGGACCGAAAGCATGCAAGGGGG
* * * *
13614630 GATCAGGCCGGTCCTCGGCTTACGCACTC
131 GATCAGGCCGATCCCCGACTTACGCACTA
* ** * * * *
13614659 TGCCTCTCCGGCCGGTTGAGCACCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
1 TGCCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTC
13614724 ATTCC
66 ATTCC
13614729 ATGTCTAGGC
Statistics
Matches: 181, Mismatches: 43, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 120 0.66
159 61 0.34
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
TGCCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTC
ATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGTGACAGCAGGACCGAAAGCATGCAAGGGGG
GATCAGGCCGATCCCCGACTTACGCACTA
Found at i:13615807 original size:196 final size:196
Alignment explanation
Indices: 13615473--13615848 Score: 497
Period size: 196 Copynumber: 1.9 Consensus size: 196
13615463 GCAAGATCGA
* *
13615473 CAGCACGCAGGGCGGACCGAGCCGATCCTTGGCTTGCACATTATGCATCTCCGGCCGGTTGAGCA
1 CAGCACGCAGGGCGGACCGAGCCGATCCTTGACTTGCACATTATGCATCTCCGGCCGATTGAGCA
* * * * * * *
13615538 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGA
66 CCCGCACGATCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGGA
* *
13615603 GTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGTAGCAGGACCAGTAGCAGGATGG
131 GTTCATTCCCACTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGACCAGTAGCAGGATGG
13615668 G
196 G
* * * * * *
13615669 CAGCACGCAGGGGGGACCGAGCCGAT-CTCTGACTTGCGCATTCTGCCTCTTCGGTCGAATT-AG
1 CAGCACGCAGGGCGGACCGAGCCGATCCT-TGACTTGCACATTATGCATCTCCGGCCG-ATTGAG
* * *
13615732 CGCCCGCGCGATCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTACGCATAC
64 CACCCGCACGATCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCATAC
* * *
13615796 GGAGTTCATTCCTACTCTCAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA
128 GGAGTTCATTCCCACTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGA
13615849 TCGACAGCAT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
195 2 0.01
196 147 0.95
197 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
CAGCACGCAGGGCGGACCGAGCCGATCCTTGACTTGCACATTATGCATCTCCGGCCGATTGAGCA
CCCGCACGATCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGGA
GTTCATTCCCACTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGACCAGTAGCAGGATGG
G
Found at i:13616175 original size:159 final size:158
Alignment explanation
Indices: 13615930--13616291 Score: 354
Period size: 158 Copynumber: 2.3 Consensus size: 158
13615920 CACACGCCCA
* * * ** *
13615930 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGTGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCGGATCGAGCGTT
** * * * *
13615995 GTGGTAGCGGGACCAGTAGCACGCAAAGGGGG-ATCGGGCCGATCCCTAGCTTACGCATTATGCC
66 ACGGCAGCAGGACCAGCAGCACGC-AAGGGGGAAT-GGGCCGATCCCCAGCTTACGCATTATGCC
* *
13616059 TCTCCGACCTG-CTCAGCGCTTGCACGCTCG
129 CCTCCGACC-GACTCAGCGCTCGCACGCTCG
* * *
13616089 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGATCGAGCGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAACCGGATCGAGCGT
* * * * * ** *
13616153 TACGGCAGCAGGATC-GACAGCACGCAGGGGGGAATGGGTCGGTCCCCGGCTTGGGCATTCTGCC
65 TACGGCAGCAGGACCAG-CAGCACGCAAGGGGGAATGGGCCGATCCCCAGCTTACGCATTATGCC
** * * * *
13616217 CCTTTGGCCGACTGAGTGCTCGGACGCTCG
129 CCTCCGACCGACTCAGCGCTCGCACGCTCG
* *
13616247 TTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTACATGTCTAAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
13616292 CATACAGAGT
Statistics
Matches: 164, Mismatches: 34, Indels: 11
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 88 0.54
159 70 0.43
160 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCGGATCGAGCGTT
ACGGCAGCAGGACCAGCAGCACGCAAGGGGGAATGGGCCGATCCCCAGCTTACGCATTATGCCCC
TCCGACCGACTCAGCGCTCGCACGCTCG
Found at i:13616246 original size:697 final size:698
Alignment explanation
Indices: 13615132--13616475 Score: 1770
Period size: 697 Copynumber: 1.9 Consensus size: 698
13615122 GAATCGGATC
* *
13615132 GAGGGTTGCGACAGCAGGATCGACAGCATGCATGGGGGACCGGGCCAATCCCCGACTTGTGCATT
1 GAGGGTTGCGACAGCAGGATCGACAGCATGCATGGGGAACCAGGCCAATCCCCGACTTGTGCATT
* * * ** * *
13615197 CTGCCTTTCCGGTTGGCTGAGCGCCCGGACACCCGTTTCGTGGGTCGGCTTAGGCATAAGGAGTT
66 CTGCCTCTCCGGCTGGCTGAGCGACCACACACCCATTTCATGGGTCGGCTTAGGCATAAGGAGTT
* * *
13615262 CATTCCAATGTCTGAGCCCCAGTCAGACTGAAGGTTGTGGCAGTGGGACCGGTAGCACGCAAAGG
131 CATTCCAATGTCTAAGCCCCAGTCAGACTGAAGGTTGTGGCAGCGGGACCAGTAGCACGCAAAGG
* * ** *
13615327 GGGACTGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCAATCGGCTTTGTGCCCGAACGCTCG
196 GGGACTGGGCCGATCCTCAGCTTACGCATTATGCCTCTCCAACCGGCTCAGCGCCCGAACGCTCG
* * *
13615392 TTTCTTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
261 TTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTT
* * ** *
13615457 GCACCAGCAAGATCGACAGCACGCAGGGCGGACCGAGCCGATCCTTGGCTTGCACATTATGCATC
326 ACACCAGCAAGATCGACAGCACGCAGGGCGGAACGAGCCGATCCCCGGCTTGCACATTATGCACC
** * * *
13615522 TCCGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
391 TCCGGCCGACTGAGCACCCGGACGCTCGTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTACA
** * * * *
13615587 TGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGTAGCAGG
456 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAAG
* * * * *
13615652 ACCAGTAGCAGGATGGGCAGCACGCAGGGGGGACCGAGCCGATCTCTGACTTGCGCATTCTGCCT
521 ACCAGGAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCT
* *
13615717 CTTCGGTC-GAATTAGCGCCCGCGCGATCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCC
586 CTTCGGTCAG-ATGAGCGCCCGCACGATCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCC
13615781 CCAGTCTACGCATACGGAGTTCATTCCTACTCTCAGATCAGACCGGACT
650 CCAGTCTACGCATACGGAGTTCATTCCTACTCTCAGATCAGACCGGACT
** **
13615830 GAGGGTTGCGGTAGCAGGATCGACAGCATGCATGGGGAACCAGGCTGATCCCC-AGCTTGTGCAT
1 GAGGGTTGCGACAGCAGGATCGACAGCATGCATGGGGAACCAGGCCAATCCCCGA-CTTGTGCAT
* * * *
13615894 TCTGCCTCTCCGGCTGGCTGAGTGACCACACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTCCGGCTGGCTGAGCGACCACACACCCATTTCATGGGTCGGCTTAGGCATAAGGAGT
* *
13615959 TCATTCC-ATGTCTAAGCCCCAGTCGGA-TCG-AGTGTTGTGGTAGCGGGACCAGTAGCACGCAA
130 TCATTCCAATGTCTAAGCCCCAGTCAGACT-GAAG-GTTGTGGCAGCGGGACCAGTAGCACGCAA
* * ** *
13616021 AGGGGGA-TCGGGCCGATCC-CTAGCTTACGCATTATGCCTCTCCGACCTGCTCAGCGCTTGCAC
193 AGGGGGACT-GGGCCGATCCTC-AGCTTACGCATTATGCCTCTCCAACCGGCTCAGCGCCCGAAC
*
13616084 GCTCGTTT-TGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATC
256 GCTCGTTTCT-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACC
** * * * * * * **
13616147 GAGCGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGAATGGGTCGGTCCCCGGCTTGGGCATT
319 GAGCGTTACACCAGCAAGATCGACAGCACGCAGGGCGGAACGAGCCGATCCCCGGCTTGCACATT
* * ** ** * *
13616212 CTGCCCCTTTGGCCGACTGAGTGCTCGGACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTT
384 ATGCACCTCCGGCCGACTGAGCACCCGGACGCTCGTTTCGTGGGTTGCCTTAGGCATACAGAGTT
*
13616277 CATTACATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
449 CATTACATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGG
* * *
13616342 CAGCAAGACTAGGAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCAT
514 CAGCAAGACCAGGAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCGCAT
* * * * **
13616407 TCTGCCTCTTCGGTCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
579 TCTGCCTCTTCGGTCAGATGAGCGCCCGCACGATCATTTCATGGGTTGACTTAGGCATACAGAGT
13616472 TCAT
644 TCAT
13616476 TCCATGTCTA
Statistics
Matches: 551, Mismatches: 87, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
696 7 0.01
697 426 0.77
698 118 0.21
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (698 bp):
GAGGGTTGCGACAGCAGGATCGACAGCATGCATGGGGAACCAGGCCAATCCCCGACTTGTGCATT
CTGCCTCTCCGGCTGGCTGAGCGACCACACACCCATTTCATGGGTCGGCTTAGGCATAAGGAGTT
CATTCCAATGTCTAAGCCCCAGTCAGACTGAAGGTTGTGGCAGCGGGACCAGTAGCACGCAAAGG
GGGACTGGGCCGATCCTCAGCTTACGCATTATGCCTCTCCAACCGGCTCAGCGCCCGAACGCTCG
TTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTT
ACACCAGCAAGATCGACAGCACGCAGGGCGGAACGAGCCGATCCCCGGCTTGCACATTATGCACC
TCCGGCCGACTGAGCACCCGGACGCTCGTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTACA
TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAAG
ACCAGGAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCT
CTTCGGTCAGATGAGCGCCCGCACGATCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC
CAGTCTACGCATACGGAGTTCATTCCTACTCTCAGATCAGACCGGACT
Found at i:13617821 original size:26 final size:26
Alignment explanation
Indices: 13617785--13617837 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13617775 GTTGGCTTAG
13617785 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
13617811 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13617837 G
1 G
13617838 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13618299 original size:158 final size:159
Alignment explanation
Indices: 13618049--13618336 Score: 375
Period size: 158 Copynumber: 1.8 Consensus size: 159
13618039 ATCGACAGTG
*** * * *
13618049 GGATCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTGGGCATTATGCCTCTCTGGTCG
1 GGATCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTACACATTATGCCTCTCCGATCA
***
13618114 GCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGTGTAAGGAGTTCATTTCCA-GTCTAA
66 GCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGACATAAGGAGTTCA-TTCCATGTCTAA
13618178 GATCGGATCAGACCGAGGGTTGTGATAGCA
130 GATCGGATCAGACCGAGGGTTGTGATAGCA
* * * *
13618208 GGATCGACAGCACGCAG-GGGGGATC-GAGCTGGTCCCTGGCTTACACATTCTGCCTCTCCGATC
1 GGATCGACAGCACGCAGAGGGGGACCGGA-CTGATCCCCGGCTTACACATTATGCCTCTCCGATC
* * * * *
13618271 AGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAA
65 AGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGACATAAGGAGTTCATTCCATGTCTAA
13618336 G
130 G
13618337 CATATGGAGT
Statistics
Matches: 109, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
157 7 0.06
158 85 0.78
159 17 0.16
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GGATCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTACACATTATGCCTCTCCGATCA
GCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGACATAAGGAGTTCATTCCATGTCTAAG
ATCGGATCAGACCGAGGGTTGTGATAGCA
Found at i:13618554 original size:26 final size:26
Alignment explanation
Indices: 13618518--13618570 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13618508 GTTGACTTAG
*
13618518 GCATGCGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
**
13618544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
13618570 G
1 G
13618571 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGTCTAA
Found at i:13618917 original size:26 final size:26
Alignment explanation
Indices: 13618886--13618938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13618876 GTTGACTTAG
*
13618886 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13618912 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13618938 G
1 G
13618939 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13619425 original size:26 final size:26
Alignment explanation
Indices: 13619389--13619438 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13619379 GGCTTAGGTG
13619389 TACAGAGTTCATT-CCATGTCTAAGCA
1 TACAGAGTTCATTCCCA-GTCTAAGCA
13619415 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
13619439 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCA
Found at i:13619618 original size:26 final size:26
Alignment explanation
Indices: 13619582--13619634 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13619572 GTTTACTTAG
13619582 GCATACGGAGTTCATACCCAATCTAA
1 GCATACGGAGTTCATACCCAATCTAA
* *
13619608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAATCTAA
13619634 G
1 G
13619635 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAATCTAA
Found at i:13619891 original size:134 final size:133
Alignment explanation
Indices: 13619648--13619892 Score: 323
Period size: 134 Copynumber: 1.8 Consensus size: 133
13619638 GAACCAGACC
* * * * * * *
13619648 GAGGGTTGTGACAGCAGGATCGGCAGCACGTAGAGGGGACTAGGCCGATCCCTGGCTTGCTCATT
1 GAGGGTTGTGACAGCAAGATCGACAGCACATAGAGGGGACCAGGCCAATCCCCGGCTTGCGCATT
* **
13619713 CTGCCTCTTCGACCGGTTGAGTGCCCGCACGCCTGTTTTGTGGGTTCGCTGACATATCCAGCCAG
66 CTGCCTCTTCGACCGGCTGAGTGCCCGCACGCCTGTTTCATGGGTTCGCTGACATATCCAGCCAG
13619778 GCA
131 GCA
** *
13619781 GAGGGTTGTGGTAGCAAGATCGACAGCACATAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCAT
1 GAGGGTTGTGACAGCAAGATCGACAGCACATAGA-GGGGACCAGGCCAATCCCCGGCTTGCGCAT
*
13619846 TCTGCCTC-TCTGATCGGCTGAGTGCCCGCACG-CTCGTTTCATGGGTT
65 TCTGCCTCTTC-GACCGGCTGAGTGCCCGCACGCCT-GTTTCATGGGTT
13619893 GGCTTAGGCA
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
133 33 0.35
134 62 0.65
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.23
Consensus pattern (133 bp):
GAGGGTTGTGACAGCAAGATCGACAGCACATAGAGGGGACCAGGCCAATCCCCGGCTTGCGCATT
CTGCCTCTTCGACCGGCTGAGTGCCCGCACGCCTGTTTCATGGGTTCGCTGACATATCCAGCCAG
GCA
Found at i:13619930 original size:26 final size:26
Alignment explanation
Indices: 13619900--13619952 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13619890 GTTGGCTTAG
*
13619900 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
13619926 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
13619952 G
1 G
13619953 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:13620661 original size:26 final size:26
Alignment explanation
Indices: 13620625--13620675 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13620615 TGACTTAGGC
*
13620625 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGAAGTTCATCCCCAGTCTAAGG
* *
13620651 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
13620676 ATGGGACTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGG
Found at i:13621015 original size:26 final size:26
Alignment explanation
Indices: 13620966--13621018 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13620956 GTTGGCTTAG
* *
13620966 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
13620992 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
13621018 G
1 G
13621019 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:13621741 original size:26 final size:26
Alignment explanation
Indices: 13621705--13621755 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13621695 TGACTTAGGC
*
13621705 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGAAGTTCATCCCCAGTCTAAGG
* *
13621731 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
13621756 ATGGGACTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGG
Found at i:13622095 original size:26 final size:26
Alignment explanation
Indices: 13622046--13622098 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13622036 GTTGGCTTAG
* *
13622046 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
13622072 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
13622098 G
1 G
13622099 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:13622822 original size:26 final size:26
Alignment explanation
Indices: 13622783--13622835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13622773 GTTGACTTAG
*
13622783 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
13622809 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
13622835 G
1 G
13622836 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:13623111 original size:159 final size:158
Alignment explanation
Indices: 13622849--13623315 Score: 428
Period size: 159 Copynumber: 2.9 Consensus size: 158
13622839 GGATTGGACT
* * * * * * * * * *
13622849 GAGGGTTGCGATAGTAGGATCGGCAACACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATT
1 GAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACCAAGTCAATCCCCGGCTTGCACATT
* * *
13622914 CTGCCTCTCCGGCCGGC-CGAGCAC-CCGCACG-TCTGTTTCGTGGGTTGGCTTAGGCATAGGGA
66 ATGCCTCTCCGGCCAGCTC-A--ACGCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGA
*
13622976 GTTCATTCCATGTCTAAGCCCCAG-TCGAATA
127 GTTCATTCCATGTCTAAGCCCCAGACCGAATA
* * * * * ** *
13623007 GAGGGTTGTGGCAGCGGGATGGACAGCACATAGAGGGGGACCGGGTCAATCCTCGG-TTAGCACA
1 GAGGGTTGCGACAGCAGGATCGACAGCACACAG-GGGGGACCAAGTCAATCCCCGGCTT-GCACA
* * *
13623071 TTATGCCTCTCCGGCCAGCTCAACGTCCGCACGCTCGTTTCGTGGTTTGACTTAGTCATACGGAG
64 TTATGCCTCTCCGGCCAGCTCAACG-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* ** * *
13623136 TTCATTCACA-GTCTATG-ATCAGACCGGATC
128 TTCATTC-CATGTCTAAGCCCCAGACCGAATA
* * * * *
13623166 GAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATT
1 GAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACCAAGTCAATCCCCGGCTTGCACATT
* * * * *
13623231 CTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
66 ATGCCTCTCCGGCCAGCTCAACGCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
13623296 CATTCCATGAT-TAAGCCCCA
130 CATTCCATG-TCTAAGCCCCA
13623316 ACAGGACCGA
Statistics
Matches: 244, Mismatches: 52, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 115 0.47
159 118 0.48
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACCAAGTCAATCCCCGGCTTGCACATT
ATGCCTCTCCGGCCAGCTCAACGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGACCGAATA
Found at i:13623283 original size:158 final size:156
Alignment explanation
Indices: 13622809--13623302 Score: 528
Period size: 158 Copynumber: 3.1 Consensus size: 156
13622799 CCCAGTCTAA
* * * *
13622809 GCATACGGAATTCATTCCCAGTCTAAGATCGGATTGGA-CTGAGGGTTGCGATAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGATC-GAGGGTTGCGATAGTAGGATCGAC
* * * * *
13622873 AACACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCCGAGCAC
64 AGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC-G
13622938 CCGCACG-TCTGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * * * ** ** *
13622967 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAATAGAGGGTTGTGGCAGCGGGATGGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGCGATAGTAGGATCGAC
** * * * * * * * *
13623031 AGCACATAGAGGGGGACCGGGTCAATCCTCGG-TTAGCACATTATGCCTCTCCGGCCAGCTCAAC
64 AGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTT-GCGCATTCTGCCTCTCCGGCCGGCTGAGC
* *
13623095 GTCCGCACGCTCGTTTCGTGGTTTGACTTAG
127 G-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13623126 TCATACGGAGTTCATTCACAGTCTATGATCAGACCGGATCGAGGGTTGCGATAGTAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGTAGGATCGACA
* *
13623191 GCACGCAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
13623256 TGCACGCTCGTTTCGTGGGTTGGCTTAG
130 -GCACGCTCGTTTCGTGGGTTGGCTTAG
13623284 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
13623303 TGATTAAGCC
Statistics
Matches: 264, Mismatches: 61, Indels: 23
0.76 0.18 0.07
Matches are distributed among these distances:
157 7 0.03
158 135 0.51
159 118 0.45
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGTAGGATCGACAG
CACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13623422 original size:13 final size:13
Alignment explanation
Indices: 13623404--13623429 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13623394 TATGCATTAT
13623404 GCCTCTCCGACCG
1 GCCTCTCCGACCG
13623417 GCCTCTCCGACCG
1 GCCTCTCCGACCG
13623430 ACTGAGTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.54, G:0.23, T:0.15
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:13623498 original size:26 final size:26
Alignment explanation
Indices: 13623468--13623520 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13623458 GTTGACTTAG
13623468 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13623494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13623520 G
1 G
13623521 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13623856 original size:159 final size:158
Alignment explanation
Indices: 13623501--13623915 Score: 386
Period size: 159 Copynumber: 2.6 Consensus size: 158
13623491 TAAGCATACG
* * * * *
13623501 GAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCAGCAGGATCGGCGGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
* * * * * * *
13623566 GGGGGGATCGGGCCGATCCCCAGCTTACGCGTTCGGCCTCTCTGGCCGGCTAAGCGCCCGCACGC
66 GGGGGGATCGGGCCAATCCCCAGCTTACGCATTAGGCCTCTCCGACCGGCTAAGCGCCCGAACAC
* * * * **
13623631 CCTTTTCGTGGGTTGGCTTAGGTGTAGG
131 CCGTTTCGTGGGTTGACATAGGCGTACA
* ** * * ** **
13623659 GAGTTCATT-CCATGTCTAAG-CCCTAGCTGAATCGAGGGTTGTTGCAGTGGGATCGACAGCACA
1 GAGTTCATTCCCA-GTCTAAGATCGGA-TTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACA
** * * * *
13623722 CAGAGGGGGATCGGGCCAATCCCTGGCTTACGCATTATGCCTCTCCGATCGGTTCAGCGCCCGAA
64 CAG-GGGGGATCGGGCCAATCCCCAGCTTACGCATTAGGCCTCTCCGACCGGCTAAGCGCCCGAA
*
13623787 CACTCGTTTCGTGGGTTGACATAGGCGTACA
128 CACCCGTTTCGTGGGTTGACATAGGCGTACA
* * * *
13623818 GAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCAGCAACAGGAT-GAACAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGGCAGCAGGATCG-ACAGCACAC
* * * * *
13623882 AGGGGGGATCAGGCCAGTCCTCGGCTTGCGCATT
65 AGGGGGGATCGGGCCAATCCCCAGCTTACGCATT
13623916 CTGTCTTTTT
Statistics
Matches: 200, Mismatches: 51, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 74 0.37
159 117 0.58
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
GGGGGGATCGGGCCAATCCCCAGCTTACGCATTAGGCCTCTCCGACCGGCTAAGCGCCCGAACAC
CCGTTTCGTGGGTTGACATAGGCGTACA
Found at i:13625423 original size:158 final size:158
Alignment explanation
Indices: 13625033--13625444 Score: 404
Period size: 158 Copynumber: 2.6 Consensus size: 158
13625023 CTCTGGCTGG
* ** *
13625033 CTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
* * *
13625098 CCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGATCACACGCAGAGGGGGACCGGGCGGATCCT
66 CCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGATCACACACAGAGGGGGACCGGGCGGATCCT
* * * **
13625163 CGCATGCGCATTATGCATCTCCGGTCGG
131 CGCATACGCATTATGCATCTCCAGCCAA
* * * * * *
13625191 CTTAGCGCCAGTACGCTCATTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
**** * * * *
13625255 -ATTGGACCAGACCTA-GGTT-TCGGTAGCAGGATCGA-CAGCACACAGGGGGGGACCAGGTC-G
65 CCCCAG-CCAGACCGAGGGTTGT-GGCAGCAGGATCGATCA-CACACAGAGGGGGACC-GGGCGG
* * *
13625315 ATCCTCGGCTTACGCATTCTGCGTCTCCAGCCAA
126 ATCCTC-GCATACGCATTATGCATCTCCAGCCAA
* * **
13625349 CTGATCGCCCGCATGCTCGTTTCATGGGTTACCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
* * *
13625414 CCCAGCCAGACTGAAGGTTGTGGCAGTAGGA
66 CCCAGCCAGACCGAGGGTTGTGGCAGCAGGA
13625445 CCGGTAGTGG
Statistics
Matches: 197, Mismatches: 47, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.02
157 41 0.21
158 136 0.69
159 16 0.08
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
CCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGATCACACACAGAGGGGGACCGGGCGGATCCT
CGCATACGCATTATGCATCTCCAGCCAA
Found at i:13625594 original size:25 final size:26
Alignment explanation
Indices: 13625556--13625607 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
13625546 GTTGACTTAC
13625556 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13625582 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13625607 G
1 G
13625608 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13625976 original size:159 final size:158
Alignment explanation
Indices: 13625582--13626083 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 158
13625572 CCTAGTCTAA
13625582 GCATAC-GAGTTCATTCCCA-GTCTAAGATCAGACCGGA-TCGAGGGTTGTGATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACT-GAGGGTTGTGATAGCAGGATCGA
* * * ** *
13625644 CAGCACGCAGGGGGGACC-GAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGC
64 CAGCACGCGGGGGGGACCGGA-TCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC
* *
13625708 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * ** * **
13625739 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGCCAGCGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGTGATAGCAGGATCGAC
* * * * * * * * *
13625803 AGCACGTAGAGGGGGACCGGATAGATCCTCCGCTTGTGCATTATGCCTATTCGGCCGACTCAGCG
65 AGCACG-CGGGGGGGACCGGATCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCG
* *
13625868 CCCGCACGCTCATTTCATGGGTTGACTTAT
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** *
13625898 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGTGATAGCAGGATCGAC
* * *
13625962 AGCAAGCGGGGGGGGACTAGG-TCGATCGC-CGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAG
65 AGCACGC-GGGGGGGAC-CGGATCGATC-CTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAG
* * * * *
13626025 CGCCGGTACACTCATTTCGTGGGTTGGCCTAG
127 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
13626057 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13626084 CATGCGGAGT
Statistics
Matches: 272, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.03
158 52 0.19
159 204 0.75
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGATAGCAGGATCGACA
GCACGCGGGGGGGACCGGATCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:13626086 original size:26 final size:26
Alignment explanation
Indices: 13626057--13626108 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13626047 GTTGGCCTAG
13626057 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
13626083 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13626109 CATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13626826 original size:26 final size:26
Alignment explanation
Indices: 13626790--13626842 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13626780 GTTGACTTAG
13626790 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13626816 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13626842 G
1 G
13626843 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13627340 original size:26 final size:26
Alignment explanation
Indices: 13627292--13627342 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
13627282 TTGGCCTAGG
* **
13627292 CATACGGAGTTCATTCATTGTCTAAA
1 CATACAGAGTTCATTCACAGTCTAAA
*
13627318 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCACAGTCTAA
13627343 GATTGGATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCACAGTCTAAA
Found at i:13628197 original size:26 final size:26
Alignment explanation
Indices: 13628147--13628199 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13628137 GTTGGCTTTC
* *
13628147 GCATTCGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13628173 GCATACGGAGTTCATTGCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13628199 G
1 G
13628200 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13628914 original size:26 final size:26
Alignment explanation
Indices: 13628869--13628921 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13628859 GTTGACTTAG
*
13628869 GCATACAGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTAATCCCCAGCCTAA
*
13628895 GCATACAGAGTTGAAT-CCCAGTCTAA
1 GCATACAGAGTT-AATCCCCAGCCTAA
13628921 G
1 G
13628922 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGCCTAA
Found at i:13629261 original size:26 final size:26
Alignment explanation
Indices: 13629211--13629263 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13629201 GTTGACTTAG
*
13629211 GCATACGGAGTTCATCCCTATTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
13629237 GCATATGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
13629263 G
1 G
13629264 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13631087 original size:27 final size:27
Alignment explanation
Indices: 13631036--13631088 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
13631026 CCATGATCAG
*
13631036 GAGTCCAAGGATGGAGACTGTGACCGA
1 GAGTCCAAGGATGGAGACTGAGACCGA
13631063 GAGTCCAAGGATGGAGA-TCGAGACCG
1 GAGTCCAAGGATGGAGACT-GAGACCG
13631089 TTCAACCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.38, T:0.13
Consensus pattern (27 bp):
GAGTCCAAGGATGGAGACTGAGACCGA
Found at i:13636004 original size:159 final size:158
Alignment explanation
Indices: 13635525--13636030 Score: 523
Period size: 159 Copynumber: 3.2 Consensus size: 158
13635515 ATCAGATCGG
* * * * * * *
13635525 ACCGAGGGTTGCGGCAGCAGGATC-GCAACATGCAGGGGGGATCGGGCCAATCCCCAGCTTGCAC
1 ACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGGGGGGATCGGGCCAATCCTCGGCTTGCAC
* * * *
13635589 ATTTTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGA
66 ATTATGCCTCTCCGACCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
13635654 ATTCATTCCATGTCTAAGCCCCAGTCGG
131 GTTCATTCCATGTCTAAGCCCCAGTCGA
* * * * * * * * * *
13635682 ATCGAGGGTTGTGGCAGCGGGACCAACAGTACGCAGAGGAGGACCGGGTCGATTCTCGACTTACA
1 ACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAG-GGGGGATCGGGCCAATCCTCGGCTTGCA
* * * * * * *
13635747 CATTATGCCTCTTCGATCGGCTCAGTGCCCGTACGCTTGTTTCATGGGTTGACTTATGCATACGG
65 CATTATGCCTCTCCGACCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* ** * *
13635812 AGTTCATTCCCA-GTCCAAG-ATCAGACCA
130 AGTTCATT-CCATGTCTAAGCCCCAGTCGA
* * * * *
13635840 GACCGAGGGTTATGGTAGCAGGATCGACAGCACGCATGGGGGGATCGGGCCAATCCTCGGTTTGC
1 -ACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCA-GGGGGGATCGGGCCAATCCTCGGCTTGC
* * *
13635905 ACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
64 ACATTATGCCTCTCCGACCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
13635970 GAGTTCATTCCATGTCTAAGCCCCGGTTGA
129 GAGTTCATTCCATGTCTAAGCCCCAGTCGA
* * *
13636000 ACCGAGGATTGTGGTAGTAGGACCAACAGCA
1 ACCGAGGGTTGTGGCAGCAGGACCAACAGCA
13636031 GGATCGGTAG
Statistics
Matches: 271, Mismatches: 71, Indels: 12
0.77 0.20 0.03
Matches are distributed among these distances:
157 20 0.07
158 14 0.05
159 230 0.85
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
ACCGAGGGTTGTGGCAGCAGGACCAACAGCACGCAGGGGGGATCGGGCCAATCCTCGGCTTGCAC
ATTATGCCTCTCCGACCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGTCGA
Found at i:13636163 original size:26 final size:26
Alignment explanation
Indices: 13636134--13636186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13636124 GTTGACATAG
*
13636134 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* *
13636160 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
13636186 G
1 G
13636187 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:13637593 original size:158 final size:159
Alignment explanation
Indices: 13637094--13637600 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 159
13637084 GGACCGAACT
** * * *
13637094 GAGGGTTGCGGCAGCAGGACC-AGCAACACGCAGAGGGGACCGAATCGATCCTCAGCTTGCGCAT
1 GAGGGTTATGGCAGCAGGACCGA-CAACACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCGCAT
* * *
13637158 TCTGCCTCTCCGACTGGCGACTGGTTGAGCACCCGCACGC-CTATTTTGTGGGTTGGCTTAGGCA
65 TCTGCCTCT---TCTGGC--C-GGCTGAGCTCCCGCACGCTC-ATTTTGTGGGTTGGCTTAGGCA
* * **
13637222 TAGGGAGTTCATTCCATGTCTAAGCCCCAACCATACC
123 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* * * * * ** * *
13637259 GAGGGTTATGGCAGTAGGACCGACAGCGCGCAGAGGGGGATCGGGTCGATCCCTGGCTCGTGCAT
1 GAGGGTTATGGCAGCAGGACCGACAACACGCAG-GGGGGACCGAGTCGATCCCCAGCTTGCGCAT
* * * * * * * *
13637324 TATGCCTCTTC-GACCGGCTCA-ATGCCTGAACGCTCATTTTGTGGGTTGACTTAGGCATACAGA
65 TCTGCCTCTTCTGGCCGGCTGAGCT-CCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGA
**
13637387 GTTCATTCCCA-GTCTAAG-ATCAGACCGGACC
129 GTTCATT-CCATGTCTAAGCCCCAG-CCGGACC
* ** * * *
13637418 GAGTGTTGCGACAGCAGGATCGACAATACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCGCATT
1 GAGGGTTATGGCAGCAGGACCGACAACACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCGCATT
* *
13637483 CTGCCT-TTCTGGCCGGCTGAGCTCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGA
66 CTGCCTCTTCTGGCCGGCTGAGCTCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGT
*
13637547 TCATTCCATGTTTAAGCCCCAGCCGGACC
131 TCATTCCATGTCTAAGCCCCAGCCGGACC
*
13637576 GAGGGTTATGGCGGCAGGACCGACA
1 GAGGGTTATGGCAGCAGGACCGACA
13637601 GTGGGATCGA
Statistics
Matches: 267, Mismatches: 65, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
157 6 0.02
158 113 0.42
159 83 0.31
160 5 0.02
162 2 0.01
163 1 0.00
165 26 0.10
166 31 0.12
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
GAGGGTTATGGCAGCAGGACCGACAACACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCGCATT
CTGCCTCTTCTGGCCGGCTGAGCTCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCGGACC
Found at i:13637758 original size:26 final size:26
Alignment explanation
Indices: 13637707--13637759 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13637697 GTTGACTTAG
* *
13637707 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
13637733 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
13637759 G
1 G
13637760 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:13638244 original size:26 final size:26
Alignment explanation
Indices: 13638208--13638260 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13638198 GTTAGCTTAG
13638208 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13638234 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13638260 G
1 G
13638261 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13638372 original size:13 final size:13
Alignment explanation
Indices: 13638354--13638380 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13638344 GCACATTCTA
13638354 CCTCTCCGGTCGG
1 CCTCTCCGGTCGG
13638367 CCTCTCCGGTCGG
1 CCTCTCCGGTCGG
13638380 C
1 C
13638381 TGAGTGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.48, G:0.30, T:0.22
Consensus pattern (13 bp):
CCTCTCCGGTCGG
Found at i:13638683 original size:684 final size:685
Alignment explanation
Indices: 13637787--13639052 Score: 1546
Period size: 684 Copynumber: 1.8 Consensus size: 685
13637777 GTTGCAACAG
* ** * * *
13637787 CAGGATCGGTAGCACGTAGGGGGGACCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCTAACC
1 CAGGATCGATAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAACC
* * *
13637852 GGCTGAGCACCCACACGCCTGTTTCATGGGTTGGCTTAGGCATTAGGAGTTCATTCCATGTCTAA
66 GGCTGAGCACCCACACACCCGTTTCATGGGTTGGCTTAGGCATTAGGAGTTCACTCCATGTCTAA
* * * * ***
13637917 GCCCTAGTCAGATTGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATTGGGCCGATC
131 GCCCCAGTCAGACTGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATC
* ** * * * * * *
13637982 CCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCTGTGCTCAAATGCTT-GTTTCGTGGGTTGAC
196 CCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCCCAAACG-TTCGTTCCGTGCGTTGAC
* * * * * *
13638046 TTAGGCATACGGAGTTC-TTTCCTAGTCTAAGATC-GAATCGAACCGAGTGTTGTGGCAGTAGTA
260 TTAGGCATACAGAGTTCATTCCCTA-TCTAAGATCAG-ATCGAACCGAGGGTTGCGGCAGCAGGA
* ** ** *
13638109 TCGACAGCACGCAGGGGGGATCGGGCCGGTCC-CTGGCTTATGCATTCTGCC-TCT-CTGGCCG-
323 TCGACAGCACGCAGGGGGGATCAGGCCGGTCCTC-AACTTACACATTCTACCTTCTCCTGGCCGT
* **
13638170 ACAGAGCACATGCACGCTCGTTTCGTGGGTTAG-CTTAGGCATACGGAGTTCATTCCATGTCTAA
387 ACAGAGC-C-CGCACGCTCGTTTCGTGGGTT-GCCTTAGGCATACAAAGTTCATTCCATGTCTAA
** * * *
13638234 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACTGAGGGTTGCGGTAGCAAGACCAGC
449 GCATACAAAGTTCATTCCCAGTCTAAGATAAGATC-GGACCGAGGGTTACGGTAGCAAGACCAGC
* *
13638298 AACAGGATCGATAACACAAAGGGGGGAGCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGG
513 AACAGGATCGACAACACAAAGGGGGGAGCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGA
13638363 TCGGCCTCTCCGGTCGGCTGAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGC
578 TCGGCCTCTCCGGTCGGCTGAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGC
13638428 TCAATTCCAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAA
643 TCAATTCCAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAA
* * * *
13638471 CAGGATCGATAGCACACAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCAGCC
1 CAGGATCGATAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAACC
* * * *
13638536 GGCTGAGCGCCCGCACACCCGTTTTATGGGTTGGCTTAGGCA-TAGGGAGTTCACTCGATGTCTA
66 GGCTGAGCACCCACACACCCGTTTCATGGGTTGGCTTAGGCATTA-GGAGTTCACTCCATGTCTA
* * *
13638600 AGCCCCAGAT-GGACTGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGACCAGGCTGA
130 AGCCCCAG-TCAGACTGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCAGGCCGA
* *** **
13638664 TCCCTGACTTGCACATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGTTCGTTCCGTGCGTTGA
194 TCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCCCAAACGTTCGTTCCGTGCGTTGA
*
13638729 CTTAGGCATGCAGAGTTCATTCCCTATCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGAT
259 CTTAGGCATACAGAGTTCATTCCCTATCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGAT
* * * * * * **
13638794 CGACAGCATGCAGGGGGTATCAGGCCGGTCCTCAACTTGCACATTCTACCTTTTCCTGTCGGTTG
324 CGACAGCACGCAGGGGGGATCAGGCCGGTCCTCAACTTACACATTCTACCTTCTCCTGGCCGTAC
*
13638859 AGAGCCCGCACGCTTGTTTCGTGGGTTGCCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATA
389 AGAGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATA
* * * * * * *
13638924 CAAAGTTCATTCCCTGTCTAAGATAAGATCGGACCGAGGTTTATGGTAGCAGGACCTGCAGCTGG
454 CAAAGTTCATTCCCAGTCTAAGATAAGATCGGACCGAGGGTTACGGTAGCAAGACCAGCAACAGG
* * *** * * * * *
13638989 ATCGGCAGCATGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGC
519 ATCGACAACACAAAGGGGGGAGCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGATCGGC
13639053 TGAGCACCTG
Statistics
Matches: 480, Mismatches: 91, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
683 4 0.01
684 297 0.62
685 167 0.35
686 7 0.01
687 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (685 bp):
CAGGATCGATAGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAACC
GGCTGAGCACCCACACACCCGTTTCATGGGTTGGCTTAGGCATTAGGAGTTCACTCCATGTCTAA
GCCCCAGTCAGACTGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATC
CCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCCCAAACGTTCGTTCCGTGCGTTGACT
TAGGCATACAGAGTTCATTCCCTATCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGGGGGGATCAGGCCGGTCCTCAACTTACACATTCTACCTTCTCCTGGCCGTACAG
AGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACA
AAGTTCATTCCCAGTCTAAGATAAGATCGGACCGAGGGTTACGGTAGCAAGACCAGCAACAGGAT
CGACAACACAAAGGGGGGAGCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGATCGGCCTC
TCCGGTCGGCTGAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCAATTCC
AGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAA
Found at i:13638929 original size:26 final size:26
Alignment explanation
Indices: 13638893--13638945 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13638883 GTTGCCTTAG
13638893 GCATACAAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
*
13638919 GCATACAAAGTTCATTCCCTGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
13638945 G
1 G
13638946 ATAAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGTCTAA
Found at i:13639466 original size:26 final size:26
Alignment explanation
Indices: 13639430--13639482 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13639420 GTTGGCTTAG
13639430 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13639456 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13639482 G
1 G
13639483 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13639832 original size:26 final size:26
Alignment explanation
Indices: 13639796--13639848 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13639786 GTTGACTTAG
*
13639796 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
13639822 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
13639848 G
1 G
13639849 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:13640153 original size:159 final size:160
Alignment explanation
Indices: 13639829--13640485 Score: 555
Period size: 159 Copynumber: 4.1 Consensus size: 160
13639819 TAAGCATAAG
* * *** **
13639829 GAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACTGAGGGTTGCAGCAGTAGGATCGGTAGCACG
1 GAGTTCATT-CCATGTCTAAGCATCGGACCGGACCGAGGGTTATGGCAGTAGGATCGACAGCACG
* * * * *
13639892 CAG-GGGGGACCAGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCTGGTCGGCT-AAGCGCCCGC
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAA-CACCCGC
* * * * *
13639955 ACACCCGTTTCATGGTTTGGCTTAGGCATA-G
129 ACACTCGTTTCGTGGGTTGACTTAGGCATACA
* ** * * * *
13639986 GTAATTCATTCCATGTCTAAGCA-CCAACCGGATCGAGGGTTGTGGCAGTAAGACCGACAGCACG
1 G-AGTTCATTCCATGTCTAAGCATCGGACCGGACCGAGGGTTATGGCAGTAGGATCGACAGCACG
** * * **
13640050 CAGAGGGGGACCGGGCCGATCCCTTGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACACCCATA
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACACCCGCA
13640115 CACTCGTTTCGTGGGTTGACTTAGGCATACA
130 CACTCGTTTCGTGGGTTGACTTAGGCATACA
* * * * *
13640146 GAGTTCATTCCCA-ATCTAA-TATCGGACCGGACCGAGGGTTACGACAGTAGGATCGACAGTACG
1 GAGTTCATT-CCATGTCTAAGCATCGGACCGGACCGAGGGTTATGGCAGTAGGATCGACAGCACG
* * * * * * ** * * * *
13640209 GAAAGGGGGACTGGGTCGGTCCCCAGCTTGCGGTTTCTGCCTCTCCGGCCGACGGATCGCCCGCA
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACACCCGCA
* *
13640274 CGCTCGTTTTGTGGGTTGACTTAGGCATACA
130 CACTCGTTTCGTGGGTTGACTTAGGCATACA
* * * * * **
13640305 AAGTTCATTCC-TAGTCTAAG-ATCGGACCAGACCGAGGGTTCTAGTAACAGGATCGACAGCACG
1 GAGTTCATTCCAT-GTCTAAGCATCGGACCGGACCGAGGGTTATGGCAGTAGGATCGACAGCACG
* * ** * * ** *
13640368 CA-TGGGGGATCGGGTTGGTCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGA-CCGC
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAAC-ACCCGC
* * *
13640431 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
129 ACACTCGTTTCGTGGGTTGACTTAGGCATACA
*
13640463 GAGTTCATTCTATGTCTAAGCAT
1 GAGTTCATTCCATGTCTAAGCAT
13640486 ACAGAGTGCA
Statistics
Matches: 398, Mismatches: 88, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.01
158 141 0.35
159 247 0.62
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GAGTTCATTCCATGTCTAAGCATCGGACCGGACCGAGGGTTATGGCAGTAGGATCGACAGCACGC
AGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACACCCGCAC
ACTCGTTTCGTGGGTTGACTTAGGCATACA
Found at i:13640813 original size:26 final size:26
Alignment explanation
Indices: 13640784--13640836 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13640774 GTTGACTTAG
13640784 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13640810 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13640836 G
1 G
13640837 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13641099 original size:158 final size:159
Alignment explanation
Indices: 13640937--13641312 Score: 398
Period size: 158 Copynumber: 2.4 Consensus size: 159
13640927 TCGGTTGACT
* * *
13640937 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGC
* * * * * *
13641001 TCAGACCAAAGGTTATGGCAGTGGGACCGACAGCACGCAGAGGGGACCGGGCCAATCCTCGGCTT
66 CCAGACAAAAGGTTACGGCAGTAGGACCGACAGCACGCAGAGGGGACCAGGCCAATCCCCGGCTT
* * **
13641066 GCACATTATGCCTCTTCGGTTGGCTCAGC
131 GCACATTATACCTCTCCGACTGGCTCAGC
* * * ** *
13641095 GCCCGAACGTTCATTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAG
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * * * * * **
13641158 CCCGGACAAAAGGTTACGGTAGTAGGATCGACAGCACGTAGGGGGGATCAGGTCGGTCCCCGGCT
65 CCCAGACAAAAGGTTACGGCAGTAGGACCGACAGCACGCAGAGGGGACCAGGCCAATCCCCGGCT
** * *
13641223 TGCGTATTCTACCTCTCCGACTGGCTGAGC
130 TGCACATTATACCTCTCCGACTGGCTCAGC
* * * *
13641253 ACCCGCACGCTCGTTCCATGGGTCGACTTAGGCATACGGAGTTCATTCAATGTCTAAGCA
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13641313 TACAAAGTTC
Statistics
Matches: 173, Mismatches: 41, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
157 5 0.03
158 164 0.95
159 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGC
CCAGACAAAAGGTTACGGCAGTAGGACCGACAGCACGCAGAGGGGACCAGGCCAATCCCCGGCTT
GCACATTATACCTCTCCGACTGGCTCAGC
Found at i:13643113 original size:26 final size:26
Alignment explanation
Indices: 13643063--13643115 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13643053 GTTGACTTAG
*
13643063 GCATACAGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCCTCAATCTAA
*
13643089 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACAGAGTTCA-TCCTCAATCTAA
13643115 G
1 G
13643116 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAATCTAA
Found at i:13643384 original size:159 final size:159
Alignment explanation
Indices: 13643174--13643592 Score: 440
Period size: 158 Copynumber: 2.6 Consensus size: 159
13643164 GGGATCGGGC
* * * * * * *
13643174 CGATCCTCGGCTTGCGTATTCTGCCTCTTCGATCGGTTGAGCGTCGGCACGCCCATTTCATGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
* * *
13643239 TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CC-AGACCGAGGGTTATGGCA-A
66 TAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGACCGA-ACCGAGGGTTACGGCAGA
* * *
13643301 CGGGA-CTGGCAGCATGTAGAGG-GGGACCAGGT
130 --GGATC-GACAGCAAGCA-AGGAGGGACCAGGT
* * * * *
13643333 CGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGGTCAGTGCCCGCACGCTCATTTCATGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
* * * * * *
13643398 CAACTTATGCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGACCGAACCGAGGGTTGCGGCAGA
66 TAGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAGA
*
13643461 GGATCGATAGCAAGCAAGGAGGGACCAGGT
130 GGATCGACAGCAAGCAAGGAGGGACCAGGT
* * * * *
13643491 CGATCCCCGGCTTACGCTTTCTGCCTC-TCTGACCGGCTGAGCACCCGTACGCTCATTTCGTGGG
1 CGATCCCCGGCTTACGCATTCTGCCTCTTC-GATCGGCTGAGCGCCCGCACGCTCATTTCATGGG
*
13643555 TTAGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
65 TTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
13643593 TACGGAGTTC
Statistics
Matches: 213, Mismatches: 38, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
157 9 0.04
158 101 0.47
159 97 0.46
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (159 bp):
CGATCCCCGGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
TAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAGAG
GATCGACAGCAAGCAAGGAGGGACCAGGT
Found at i:13643749 original size:185 final size:184
Alignment explanation
Indices: 13643406--13643776 Score: 480
Period size: 185 Copynumber: 2.0 Consensus size: 184
13643396 GTCAACTTAT
* *
13643406 GCATACGGAGTTCATTCCCATTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGAGGATCGATAG
1 GCATACGGAGTTCATTCCCATTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGAGGATCAATAG
* * * * *
13643471 CAAGCAAGGAGGGACCAGGTCGATCCCCGGCTTACGCTTTCTGCCTCTCTGACCGGCTGAGCACC
66 CAAGCAAGGAAGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCAGAGCACC
* * * *
13643536 CGTACGCTCATTTCGTGGGTTAGCTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CGCACGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
**
13643590 GCATACGGAGTTCATTCCCAGTT-TAAGATTGGACC-AGACCGAAGGGTTGCAGCAGCAGGATCA
1 GCATACGGAGTTCATTCCCA-TTCTAAGATCAGACCGA-ACCG-AGGGTTGCAGCAG-AGGATCA
* * * * * *
13643653 ATAGCACGC-AGGAAGGACCGGGTCGGTCCCCGGCTTGCTCATTCTACCTCTCCGACTGGCAGAG
62 ATAGCAAGCAAGGAAGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCAGAG
* *
13643717 CGA-CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
127 C-ACCCGCACGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
13643775 GC
1 GC
13643777 CCCAACCAGA
Statistics
Matches: 161, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
183 1 0.01
184 34 0.21
185 111 0.69
186 15 0.09
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCATTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGAGGATCAATAG
CAAGCAAGGAAGGACCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCAGAGCACC
CGCACGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
Found at i:13643901 original size:26 final size:26
Alignment explanation
Indices: 13643850--13643902 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13643840 CCCAGCTTAG
* **
13643850 GCATACGTAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATACCTAA
13643876 GCATACGAAGTTCATTCCCA-ACCTAA
1 GCATACGAAGTTCATT-CCATACCTAA
13643902 G
1 G
13643903 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATACCTAA
Found at i:13644246 original size:26 final size:26
Alignment explanation
Indices: 13644217--13644269 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13644207 GCTGACTTAG
13644217 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
* *
13644243 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
13644269 G
1 G
13644270 ATTAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:13644745 original size:26 final size:26
Alignment explanation
Indices: 13644694--13644746 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13644684 GTTGACTTAG
**
13644694 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAACCTAA
* *
13644720 GCATACAGGGTTCATTCCCAACCTAA
1 GCATACAGAGTTCATCCCCAACCTAA
13644746 G
1 G
13644747 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAACCTAA
Found at i:13645020 original size:159 final size:158
Alignment explanation
Indices: 13644784--13645222 Score: 444
Period size: 158 Copynumber: 2.8 Consensus size: 158
13644774 CTGGATCGGT
* * * * *
13644784 AGCACATAG-GGGGGATCGGGCCGATCCTCGCTTACGCATTCTGCCTCTTCGATCGGTTGAGCGT
1 AGCACGTAGAGGGGGACCGGGCCGATCCCCGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGC
* * *
13644848 CGGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CC
66 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGACC
* * *
13644912 GGACTGAGGGTTATGGCAACG-GGA-CTGGC
131 GAACCGAGGGTTATGG-AA-GAGGATC-GAC
* * * * * *
13644941 AGCACGTAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCGGTCGGGTCAGTG
1 AGCACGTAGAGGGGGACCGGGCCGATCCCC-GCTTACGCATTCTGCCTCTTCGATCGGCTGAGCG
* *** * * *
13645006 CCCGCATGCTCGTTTCATGGGTCAACTTATGCATACGGAGTTCATTCACAT-TCTAAG-ATCAGA
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTC-CATGTCTAAGCACCAGA
* *
13645069 CCGAACCGAGGGTTGTGGTAGAGGATCGAC
129 CCGAACCGAGGGTTATGGAAGAGGATCGAC
* * * * * *
13645099 AGCATGCA-AGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCCTC-TCTGACCGGCTGAG
1 AGCACGTAGA-GGGGGACCGGGCCGATCCCCG-CTTACGCATTCTGCCTCTTC-GATCGGCTGAG
* *
13645162 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
63 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
13645223 TATGGAGTTC
Statistics
Matches: 227, Mismatches: 44, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
157 16 0.07
158 118 0.52
159 90 0.40
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCACGTAGAGGGGGACCGGGCCGATCCCCGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGACC
GAACCGAGGGTTATGGAAGAGGATCGAC
Found at i:13645230 original size:26 final size:26
Alignment explanation
Indices: 13645194--13645246 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13645184 GTTGGCTTAG
13645194 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
13645220 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13645246 G
1 G
13645247 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13645955 original size:26 final size:26
Alignment explanation
Indices: 13645919--13645971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13645909 GTTGACTTAG
*
13645919 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
13645945 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13645971 G
1 G
13645972 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13646132 original size:26 final size:26
Alignment explanation
Indices: 13646102--13646154 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13646092 GTTGGCTTAG
*
13646102 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13646128 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13646154 G
1 G
13646155 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13646916 original size:415 final size:405
Alignment explanation
Indices: 13646123--13646918 Score: 1111
Period size: 415 Copynumber: 1.9 Consensus size: 405
13646113 TCATTCCATG
* * *
13646123 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGATTAGG
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATGCACATGCTGGCATTAGG
* * *
13646188 CATGTGCTGGTGCCACATTTTTTTCACCCGGGGCACCATCGTCAGAACATCACCGGAGAGCCTAA
66 CATGTACTGGTGCCACATTTTTTTCACCCGGGGCACCATCGTCAGAACATCACCAGAGAGACTAA
* * *
13646253 CCAGCGGCATTGGGGATTTCGACGATAGGGGGCCCGGGGGTGTGCGCACATGATGTGCGATGGGT
131 CCAGCGGCATT-GCGAGTTCGACGATAGGGGGCCCGGGGGTGTGCACACATGATGTGCGATGGGT
*
13646318 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCGCACGCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACGCCCTT
13646383 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTAAAATGGGGACAC
* **
13646448 TTTTTTCAAAGGGTCACAAAATCTTCTCCACCTTAAGTTTTTAGCTGATTTTTTTTTTTTTTCAT
325 TTCTTTCAAACAGTCACAAAATCTTCTCCACCTTAAGTTTTTAGCTGATTTTTTTTTTTTTTCAT
13646513 GCCAACAAAATACATT
390 GCCAACAAAATACATT
* * * *
13646529 TCTAAGCATAGGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATGCTGGCCTTGGG
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATGCACATGCTGGCATTAGG
* *
13646594 CATGTACTGGTGCTAGTATTTTTTTCACCCGGGGCACCATCGCTGGAGCATCCCCGGAACATCAC
66 CATGTACTGGTGCCA-CATTTTTTTCACCCGGGGCACCATCG-T----CA------GAACATCAC
* * * *
13646659 CAGAGAGACTAACC-GACGGTATT-CGAGTTCGATGAATTGGGGGGCCGAGGGGTG-GCACACAT
119 CAGAGAGACTAACCAG-CGGCATTGCGAGTTCGACG-ATAGGGGGCCCG-GGGGTGTGCACACAT
**
13646721 GATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTAATCCCTCATCAAACCTTGAG
181 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCCAG
* *
13646785 AACTCACAC-CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG-CGGTAGCCATTAAAGTGT
245 AACTCACACGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGT
* * *
13646848 CTGAAATGGGGACACTTCTTTCAAACAGTCACAAAATCTTCTCCACTTTGAGTTTTTAGC-GTAT
310 CTAAAATGGGGACACTTCTTTCAAACAGTCACAAAATCTTCTCCACCTTAAGTTTTTAGCTG-AT
13646912 TTTTTTT
374 TTTTTTT
13646919 GGCATGCCAA
Statistics
Matches: 343, Mismatches: 30, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
406 71 0.21
407 25 0.07
408 1 0.00
412 2 0.01
414 1 0.00
415 79 0.23
416 63 0.18
417 68 0.20
418 33 0.10
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (405 bp):
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATGCACATGCTGGCATTAGG
CATGTACTGGTGCCACATTTTTTTCACCCGGGGCACCATCGTCAGAACATCACCAGAGAGACTAA
CCAGCGGCATTGCGAGTTCGACGATAGGGGGCCCGGGGGTGTGCACACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACGCCCTTA
AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTAAAATGGGGACACT
TCTTTCAAACAGTCACAAAATCTTCTCCACCTTAAGTTTTTAGCTGATTTTTTTTTTTTTTCATG
CCAACAAAATACATT
Found at i:13647653 original size:158 final size:157
Alignment explanation
Indices: 13647227--13647726 Score: 407
Period size: 158 Copynumber: 3.2 Consensus size: 157
13647217 CAGTTTAAGG
* * * * * * * *
13647227 ATACAAAGTTCATTCCCAGTCTAA-CTTCAAACCGGATCAAGGGTTGCGGTAGCAGGATCGGTAG
1 ATACAGAGTTCATTCCCAGTCTAAGCTT-AGACAGGACCAAGGGTTGTGGCAGCAGGATTGATAG
* ** * * * * * * * *
13647291 CACGCAGGGGGGACCGAGCTAATCCCCGGCTTGCGCATTTTTCATCTCCGGTCGGTTGAGTGCTC
65 CACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGGCTCAGCGCTC
*
13647356 GCACACCCATTTCGTGGTTGGCTTAGGC
130 GCACACCCATTTCGTGGTTGACTTAGGC
** * ** * * * * *
13647384 ATAGGGAGTTCATT-CCATGTCAAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACTGACA
1 ATACAGAGTTCATTCCCA-GTCTAAG-CTTAGACAGGACCAAGGGTTGTGGCAGCAGGATTGATA
* * * *
13647447 GCACGCAGAGGGGGACCAGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCTGCTCAGCGC
64 GCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGGCTCAGCGC
* *
13647512 TCG-ATTACTCATTTCGTGGGTTGACTTAGGC
128 TCGCA-CACCCATTTCGT-GGTTGACTTAGGC
* *
13647543 ATACAGAGTTCATTCCCAGTCTAAGATTAGACAGGACCAAGGGTTGTGGCAGCAAGATTGATAGC
1 ATACAGAGTTCATTCCCAGTCTAAGCTTAGACAGGACCAAGGGTTGTGGCAGCAGGATTGATAGC
* * * * ** * * *
13647608 ACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGATCGGCTGAGCACCCG
66 ACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGGCTCAGCGCTCG
* * * * *
13647673 CACGCTCGTTTTGTGGGTTGGCTTAGGC
131 CACACCCATTTCGT-GGTTGACTTAGGC
* *
13647701 ATACGGAGTTCAAT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
13647727 ATACGGAGTT
Statistics
Matches: 266, Mismatches: 67, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 50 0.19
158 145 0.55
159 65 0.24
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
ATACAGAGTTCATTCCCAGTCTAAGCTTAGACAGGACCAAGGGTTGTGGCAGCAGGATTGATAGC
ACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCGGCCGGCTCAGCGCTCG
CACACCCATTTCGTGGTTGACTTAGGC
Found at i:13648677 original size:26 final size:26
Alignment explanation
Indices: 13648627--13648679 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13648617 GTTGGCTTAG
*
13648627 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
13648653 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
13648679 G
1 G
13648680 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13649364 original size:26 final size:26
Alignment explanation
Indices: 13649335--13649387 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13649325 GTTGACTTAG
*
13649335 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13649361 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13649387 G
1 G
13649388 ATTCAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13649659 original size:157 final size:156
Alignment explanation
Indices: 13649403--13649700 Score: 380
Period size: 157 Copynumber: 1.9 Consensus size: 156
13649393 ATCGGATCGA
* ** * *
13649403 GGGTTGCGGTAGTAGGATCGGTAGCACGCAGGGGGACTGGGTCGATCCCCGGCTTGCACATTCTG
1 GGGTTGCGGTAGTAGGACCGGTAGCACGCAGGGGGACCAGGCCAATCCCCGGCTTGCACATTCTG
* * * * *
13649468 CCTCTCTGACCGACTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCAT
66 CCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCAT
13649533 TCCATGTCTAACCCTGGCCGAAGTGG
131 TCCATGTCTAACCCTGGCCGAAGTGG
* * * **
13649559 GGGTTGGGGTAGTGGGACCGGTAGCACGCTGGGGGGACCAGGCCAATCCCCGGCTTGTGCATTCT
1 GGGTTGCGGTAGTAGGACCGGTAGCACGC-AGGGGGACCAGGCCAATCCCCGGCTTGCACATTCT
* ** ** * * *
13649624 GCCTTTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCG
65 GCCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCA
13649689 TTCCATGTCTAA
130 TTCCATGTCTAA
13649701 GCATATGGAG
Statistics
Matches: 118, Mismatches: 23, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
156 26 0.22
157 92 0.78
ACGTcount: A:0.15, C:0.26, G:0.34, T:0.25
Consensus pattern (156 bp):
GGGTTGCGGTAGTAGGACCGGTAGCACGCAGGGGGACCAGGCCAATCCCCGGCTTGCACATTCTG
CCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCAT
TCCATGTCTAACCCTGGCCGAAGTGG
Found at i:13649705 original size:26 final size:26
Alignment explanation
Indices: 13649675--13649727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13649665 GTTGGCTTAG
*
13649675 GCATATAGAGTTCGTT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
*
13649701 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
13649727 G
1 G
13649728 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:13650031 original size:158 final size:158
Alignment explanation
Indices: 13649701--13650192 Score: 354
Period size: 158 Copynumber: 3.1 Consensus size: 158
13649691 CCATGTCTAA
* * *
13649701 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGACAGCAGGACCAACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAGGACCAACA
* * * * *
13649766 GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACTAGCTGAACGCC
66 GAACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACTAGCTGAACGCC
*
13649831 CGCACGCTCGTTTCATGGGTTGACTTAG
131 CGCACGCCCGTTTCATGGGTTGACTTAG
* * * * *
13649859 GCATACGAAATTCATTCCCAATCTAAGATCTA-ACTAGACCGAGGGTTGC-AGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAATCTAAGATC-AGACCAGACCGAAGGTTGCGA-CAGCAGGA-CCA
* * * * * * *
13649922 A-AGAACGTAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTTTGCCTCTCTAA-TCGGCT-AA
63 ACAGAACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACT-AGCTGAA
* * *
13649984 GCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
127 -CGCCCGCACGCCCGTTTCATGGGTTGACTTAG
** * ** * ** * * ** ** *
13650017 GCATTGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCTGATTGAGGGTTGTGGTAGTGGGACCAG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACCGAAGGTTGCGACAGCAGGACCAA
* ** * * * *
13650080 CA-ACACGCAGAGGGGGACTGGGCCGATCTTCGACTTGC-CATTCTGCCTCTCCGATTGGCTGAG
64 CAGA-ACGCA-AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACTAGCTGAA
* * * * ** *
13650143 CGCCCGTACGCTCATTTCGTGCATTGGCTTAG
127 CGCCCGCACGCCCGTTTCATGGGTTGACTTAG
*
13650175 GCAAACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13650193 ATTTCTAAGC
Statistics
Matches: 261, Mismatches: 58, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
157 10 0.04
158 219 0.84
159 32 0.12
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAGGACCAACA
GAACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACTAGCTGAACGCC
CGCACGCCCGTTTCATGGGTTGACTTAG
Found at i:13650680 original size:26 final size:26
Alignment explanation
Indices: 13650651--13650708 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
13650641 CTCTTTCTAA
* *
13650651 AAAAATTTTAAAAAAATC-TCAAACAT
1 AAAAAGTTT-AAAAAATCATCAAAAAT
*
13650677 AAAAAGTTTCAAAAATCATCAAAAAT
1 AAAAAGTTTAAAAAATCATCAAAAAT
13650703 AGAAAA
1 A-AAAA
13650709 CGGGTCATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 7 0.26
26 16 0.59
27 4 0.15
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATCAAAAAT
Found at i:13651832 original size:514 final size:514
Alignment explanation
Indices: 13650859--13651857 Score: 1229
Period size: 514 Copynumber: 1.9 Consensus size: 514
13650849 CGCATCCTGT
* *
13650859 CTCTCTGGTCGACTGAGTGTCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGAAGTTCATC
1 CTCTCCGGTCGACTGAGTGACCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGAAGTTCATC
* * * *
13650924 CCCAGTCTAAGGATATAGAGTTCATTCCCAGTCTAACATCAGACCGGATCAAGGGTTGCGGTAGC
66 CCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGCTGCGGTAGC
* * * * * *
13650989 AGGATCGGTAGCACGTAGGGGGGACCGAGCTGATCCCCGGCTTGCACATTTTGCATCTTCGGTCG
131 AGGATCAGTAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTACACATTCTGCATCTCCGATCG
**
13651054 GCTGAGCGCTTGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCAAAG
196 GCTGAGCGCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCAAAG
* * * * * *
13651119 CCCCAGCTGGACTGAGGGTTGTAGCAGCGGGATTGATAGCACGCAGAGGGGGACCGAGCCGATCC
261 CCCCAACCGGACCGAGGGTTGTAGCAACGGGATTGACAGCACGCAGAGGGGGACCGAGCAGATCC
* ** * * *
13651184 TTGACTTGGGCATTATGCCTCACCGGCCTGCTCAGTGCTCGATTGCTCGTTTCGTGCGTTAACTT
326 CTGACTTACGCATTATGCCTCACCAGCCTGCTCAGTGCCCGACTGCTCGTTTCGTGCGTTAACTT
* * ** **
13651249 AGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCAAGATTGA
391 AGGCATACAGAGTTCAGTCCCAGTCTAAGATCAGACCAGACCAAGCATTGCGACAGCAAGATTGA
*
13651314 CAGCACGCAGGGGGGATCGCGTCGATCCCCGACTTGCACATTCAGCCTCTCCGACCAGC
456 CAGCACGCAGGGGGGATCGCGCCGATCCCCGACTTGCACATTCAGCCTCTCCGACCAGC
* **
13651373 CTCTCCGGTCGACTGAGT-ACCTGCACGCTCGTTTCGTGGGTTGACTTAAG-GATACGGGGTTCA
1 CTCTCCGGTCGACTGAGTGACC-GCACGCTCGTTTCGTGGGTTGACTT-AGCCATACGAAGTTCA
* * * *
13651436 TCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGCTGCGGT
64 TCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAACATCAG-ACCAGACCAAGGGCTGCGGT
* * * * * * *
13651500 AGTAGGATCAGTAGCACGCAGGGTGGATCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGA
128 AGCAGGATCAGTAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTACACATTCTGCATCTCCGA
* * ** * * *
13651565 TCGGCTGAGTGCCCGTATGCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 TCGGCTGAGCGCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCA
* * * * * * * *
13651630 AAGCCCTAACCGGACCGAGGGTTGTGGTAATGGG-TCTGGCAGCACGCAGAGGGGGATCGGGTAG
258 AAGCCCCAACCGGACCGAGGGTTGTAGCAACGGGAT-TGACAGCACGCAGAGGGGGACCGAGCAG
* * *
13651694 ATCCCTGACTTACGCATTATGCCTCTCCAGCC-GACTCAGCT-CCCGCACT-CTCGTTTCTTGGG
322 ATCCCTGACTTACGCATTATGCCTCACCAGCCTG-CTCAG-TGCCCG-ACTGCTCGTTTCGTGCG
* * * * *
13651756 TTAACTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATCAGACCAGATCGAGCATTGTGGCAGCA
384 TTAACTTAGGCATACAGAGTTCAGTCCCAGTCTAAGATCAGACCAGACCAAGCATTGCGACAGCA
* * *
13651821 GGATTGACAGCATGCAGGGGGGATCGGGCCGATCCCC
449 AGATTGACAGCACGCAGGGGGGATCGCGCCGATCCCC
13651858 AGCTTATGCA
Statistics
Matches: 405, Mismatches: 73, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
513 5 0.01
514 395 0.98
515 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (514 bp):
CTCTCCGGTCGACTGAGTGACCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGAAGTTCATC
CCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGCTGCGGTAGC
AGGATCAGTAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTACACATTCTGCATCTCCGATCG
GCTGAGCGCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCAAAG
CCCCAACCGGACCGAGGGTTGTAGCAACGGGATTGACAGCACGCAGAGGGGGACCGAGCAGATCC
CTGACTTACGCATTATGCCTCACCAGCCTGCTCAGTGCCCGACTGCTCGTTTCGTGCGTTAACTT
AGGCATACAGAGTTCAGTCCCAGTCTAAGATCAGACCAGACCAAGCATTGCGACAGCAAGATTGA
CAGCACGCAGGGGGGATCGCGCCGATCCCCGACTTGCACATTCAGCCTCTCCGACCAGC
Found at i:13651950 original size:26 final size:26
Alignment explanation
Indices: 13651920--13651975 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
13651910 TGGGTTGGCT
13651920 TAAGCATACCGAGTTCATT-CCATGTC
1 TAAGCATACCGAGTTCATTCCCA-GTC
*
13651946 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
13651972 TAAG
1 TAAG
13651976 ATCAGATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATTCCCAGTC
Found at i:13652898 original size:26 final size:26
Alignment explanation
Indices: 13652868--13652920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13652858 GTTGACTTAG
13652868 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13652894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13652920 G
1 G
13652921 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13653193 original size:158 final size:156
Alignment explanation
Indices: 13652957--13653391 Score: 489
Period size: 158 Copynumber: 2.8 Consensus size: 156
13652947 CAGGATCAGT
* * * * * *
13652957 AGCACGCAGGGGGGACCGAGCCGATCCACGGCTTGCGCATTCTGCCTCTCTAGCCGGCTGAGCGT
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC-CGGCGGCTGAGCG-
* * *
13653022 CCGCATGCCCGTTTCGTGGGTTGGGTTAGGCATA-GGAGTTCATTCCATGACTAACCCCCA-ACT
64 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAA-CACCAGACT
* * ** *
13653085 GGATTGAGGGTTGTGGCAGTGGGACCGGC
128 GGACTGAGGGTTGTGACAGCAGGACCGAC
* *
13653114 AGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
1 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCG
* * * * *
13653179 CCTGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCA-GACTAAGATCAGACT
64 CC-GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAACACCAGACT
*
13653243 GGACTGAGGGTTGTGACAGCAGGATCGAC
128 GGACTGAGGGTTGTGACAGCAGGACCGAC
* ** * * * *
13653272 AACACGTTGGGGGGATCGGTTCGGTCCCCAGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCG-
* * *
13653337 CCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
64 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAA
13653392 GCATACGGAG
Statistics
Matches: 233, Mismatches: 37, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.00
157 102 0.44
158 117 0.50
159 13 0.06
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (156 bp):
AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCC
GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAACACCAGACTGGA
CTGAGGGTTGTGACAGCAGGACCGAC
Found at i:13653396 original size:26 final size:26
Alignment explanation
Indices: 13653366--13653418 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13653356 GTTGGCTTAG
13653366 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13653392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13653418 G
1 G
13653419 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13654114 original size:26 final size:26
Alignment explanation
Indices: 13654077--13654129 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13654067 GTTGACTTAG
13654077 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
13654103 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
13654129 G
1 G
13654130 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13654588 original size:159 final size:158
Alignment explanation
Indices: 13654103--13654603 Score: 455
Period size: 157 Copynumber: 3.2 Consensus size: 158
13654093 CCTAGTCTAA
* * * *
13654103 GCATAC-GAAGTTCATTCCCA-GTCTAAGATCAGACTAGACCGAGGGTTATGGTTGCAGGATCGA
1 GCATACTG-AGTTCATT-CCATGTCTAAGATCAGA-TGGACCGAGGGTTGTGGTAGCAGGATTGA
* * ***
13654166 TAGCACACAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
63 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGC
* *
13654230 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 ACCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
** ** * * * *
13654261 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTGGCAGCGGGACCTG-
1 GCATACTGAGTTCATTCCATGTCTAAG-ATCAGAT-GGACCGAGGGTTGTGGTAGCAGGA-TTGA
* * * ** ** * * * * *
13654324 CAGCATGTAGAGGGGGA--AGGCTAATCCCTAGCTTGTGCATTATGGCTCT-CTAGTTGGCTCAG
63 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TTGGCTGAG
* * * *
13654386 CGCCCACAAACTTGTTTCGTGGGTTGGCTTAG
127 CACCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
* * *
13654418 GCATA-TGGAGTTTATTCCCA-GTCTAAGATCAGATGGGACCGAGGGTTGCGGTAGTAGGATTGA
1 GCATACT-GAGTTCATT-CCATGTCTAAGATCAGAT-GGACCGAGGGTTGTGGTAGCAGGATTGA
* * *
13654481 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGTCTTTCCGATTGGCTGAGT
63 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGC
* *
13654546 ACCCGCATGCTCGTTTTGTGGGTTGGCTTAG
128 ACCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
13654577 GCATACTGAGTTCATTCCATGTCTAAG
1 GCATACTGAGTTCATTCCATGTCTAAG
13654604 CATACGGAGT
Statistics
Matches: 261, Mismatches: 66, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
156 6 0.02
157 115 0.44
158 50 0.19
159 87 0.33
160 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATACTGAGTTCATTCCATGTCTAAGATCAGATGGACCGAGGGTTGTGGTAGCAGGATTGACAG
CACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCACC
CGCAAGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13654627 original size:26 final size:26
Alignment explanation
Indices: 13654577--13654629 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13654567 GTTGGCTTAG
* *
13654577 GCATACTGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13654603 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13654629 G
1 G
13654630 ATCCGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13654811 original size:26 final size:26
Alignment explanation
Indices: 13654774--13654826 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13654764 GTTGGGTTAG
13654774 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
13654800 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATACCG-AGTTCATTCCCAGTCTAA
13654826 G
1 G
13654827 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:13654816 original size:197 final size:197
Alignment explanation
Indices: 13654481--13654847 Score: 522
Period size: 197 Copynumber: 1.9 Consensus size: 197
13654471 GTAGGATTGA
* * * ** * * *
13654481 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGTCTTTCCGATTGGCTGAGT
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGAATTCTCCCTTTCCGACTGACTGAGC
* * * * *
13654546 ACCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCATACGG
66 ACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCATACGA
*
13654611 AGTTCATTCCCAATCTAAGATCCGACTGGATCGAGGGTTGCGACAGCAGGACCAGTAGCAGGATC
131 AGTTCATTCCCAATCTAAGATCCGACTGGACCGAGGGTTGCGACAGCAGGACCAGTAGCAGGATC
13654676 GG
196 GG
* *
13654678 CAGCACGCACGA-GGGGACCGGGTCGATCCCCGGCTTACGAATTCTCCCTCTT-CGGCTGACTGA
1 CAGCACGCA-GAGGGGGACCGGGCCGATCCCCGGCTTACGAATTCTCCCT-TTCCGACTGACTGA
* *
13654741 GCGCCCGCACGCTCATTTCGTGGGTTGGGTTAGGCATACCGAGTTCATTCCATGTCTAAGCATAC
64 GCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCATAC
* *
13654806 GAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
129 GAAGTTCATTCCCAATCTAAGATCCGACTGGACCGAGGGTTG
13654848 TGATAGTAGG
Statistics
Matches: 148, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
197 144 0.97
198 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (197 bp):
CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGAATTCTCCCTTTCCGACTGACTGAGC
ACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCATACGA
AGTTCATTCCCAATCTAAGATCCGACTGGACCGAGGGTTGCGACAGCAGGACCAGTAGCAGGATC
GG
Found at i:13655307 original size:26 final size:26
Alignment explanation
Indices: 13655276--13655328 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13655266 GTTGGCTTAG
13655276 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13655302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13655328 G
1 G
13655329 TTAGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13655679 original size:26 final size:26
Alignment explanation
Indices: 13655643--13655695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13655633 GTTGACTTAG
13655643 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13655669 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13655695 G
1 G
13655696 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13656194 original size:26 final size:26
Alignment explanation
Indices: 13656144--13656196 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13656134 GTTGGCTTAG
*
13656144 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
13656170 GCATACGGAGTTCATT-CATAATCTAA
1 GCATACGAAGTTCATTCCAT-ATCTAA
13656196 G
1 G
13656197 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:13662827 original size:26 final size:26
Alignment explanation
Indices: 13662787--13662839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13662777 GTTGACTTAG
*
13662787 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGATCATCCCCAGTCTAA
*
13662813 GCATACGAAGATCATTCCCAGTCTAA
1 GCATACGAAGATCATCCCCAGTCTAA
13662839 G
1 G
13662840 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGATCATCCCCAGTCTAA
Found at i:13663337 original size:26 final size:26
Alignment explanation
Indices: 13663287--13663339 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13663277 GTTGGCTTAG
*
13663287 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13663313 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13663339 G
1 G
13663340 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13663695 original size:26 final size:26
Alignment explanation
Indices: 13663666--13663718 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13663656 GTTGACTTAG
*
13663666 GCATACGAAGTTTATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
13663692 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13663718 G
1 G
13663719 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13664920 original size:26 final size:26
Alignment explanation
Indices: 13664890--13664942 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13664880 GTTGGCTTAG
*
13664890 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13664916 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13664942 G
1 G
13664943 ATTCGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13665669 original size:317 final size:317
Alignment explanation
Indices: 13665158--13665756 Score: 715
Period size: 317 Copynumber: 1.9 Consensus size: 317
13665148 GTTGGATTGA
* * * * * * *
13665158 CAGCATGCAGAGGGGGACCTGGCTGATCCCCGGCTTGTGCATTATGTCTCTCCGGCTGGCTGAGC
1 CAGCAAGCAGAAGGGGACCGGGCTGATCCCCGACTTGTGCATTATGTCTCTCCAGCCGGCTCAGC
* * **
13665223 ACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCGGAC
66 ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAATTCATCCCCAGAATAAGATCGGAC
* *** * ** *
13665288 CGGATTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAAGGGGGATCGAGCCAATCTCCGGCTTA
131 CAGAGCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCAATCTCCGGCTTA
* * * ** * *
13665353 CGCATTCTACCTCTCTGGCCGACTGGGTGC-C-TGCATGTCCGTTTCGTGGGTTGGCTTAGGCG-
196 CGCATTCTACCTCTCCGACCGACTGAGCACTCGTACA-CT-CGTTTCGTGGGTTGGCTTAGG-GA
* *
13665415 TAGGGATTTCATTCCATGTCTAAGCCTGAGTCAGACTGAGGGTTGTGGCAGCGAGACCTG
258 TACGGAGTTCATTCCATGTCTAAGCCTGAGTCAGACTGAGGGTTGTGGCAGCGAGACCTG
* **
13665475 CAGCAAGCAGAAGGGGACCGGG-TCGATCCTCGACTTGTGCATTATGTCTCTTTAGCCGGCTCAG
1 CAGCAAGCAGAAGGGGACCGGGCT-GATCCCCGACTTGTGCATTATGTCTCTCCAGCCGGCTCAG
* * * * ** *
13665539 CGCCCGCACTCTCGTTTCGTGGGTTGACTTATGCATATGGAATTCATTCCCAGAATAAGATCGGA
65 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAATTCATCCCCAGAATAAGATCGGA
* * * *
13665604 TCAGAGCAAGGGTTGCGGCAGCAGGATCGACAGCATGC-AGGAGGGACCGGGCCGATC-CTCGGC
130 CCAGAGCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGG-GGGACCGAGCCAATCTC-CGGC
*
13665667 TTACGCATTCTACCTCTCCGACCGGCTGAGCACTCGTACACTCGTTTCGTGGGTTGGCTTAGGGA
193 TTACGCATTCTACCTCTCCGACCGACTGAGCACTCGTACACTCGTTTCGTGGGTTGGCTTAGGGA
13665732 TACGGAGTTCATTCCATGTCTAAGC
258 TACGGAGTTCATTCCATGTCTAAGC
13665757 ATACAGAGTT
Statistics
Matches: 233, Mismatches: 43, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
316 6 0.03
317 222 0.95
318 2 0.01
319 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (317 bp):
CAGCAAGCAGAAGGGGACCGGGCTGATCCCCGACTTGTGCATTATGTCTCTCCAGCCGGCTCAGC
ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAATTCATCCCCAGAATAAGATCGGAC
CAGAGCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCAATCTCCGGCTTA
CGCATTCTACCTCTCCGACCGACTGAGCACTCGTACACTCGTTTCGTGGGTTGGCTTAGGGATAC
GGAGTTCATTCCATGTCTAAGCCTGAGTCAGACTGAGGGTTGTGGCAGCGAGACCTG
Found at i:13665767 original size:26 final size:26
Alignment explanation
Indices: 13665731--13665781 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13665721 TGGCTTAGGG
* *
13665731 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACAGAGTTCACTCCTA-GTCTAAGC
13665757 ATACAGAGTTCACTCCTAGTCTAAG
1 ATACAGAGTTCACTCCTAGTCTAAG
13665782 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCACTCCTAGTCTAAGC
Found at i:13666399 original size:355 final size:352
Alignment explanation
Indices: 13665619--13666686 Score: 1111
Period size: 355 Copynumber: 3.0 Consensus size: 352
13665609 GCAAGGGTTG
* * * *
13665619 CGGCAGCAGGATCGACAGCATGC-AGGAGGGACCGGGCCGATCCTCGGCTTACGCATTCTACCTC
1 CGGCAGCGGGATCGACAGCATGCAAGG-GGGACCGGGCTGATCCCCGGCTTACGCATTATACCTC
* * * * *
13665683 TCCGACCGGCTGAGCACTCGTACACTCGTTTCGTGGGTTGGCTTAGGGATACGGAGTTCATTCCA
65 TCCGACCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA
* * * * *
13665748 TGTCTAAGCATACAGAGTTCACTCCTAGTCTAAGATCGGACC-AGACCAAGGGTTGCGGTAGCAG
130 -GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGA-GG--GC--T-GC--
* * * * *
13665812 GACCAGTAGCCGGATCGGTAGCATGCAGGGAGGGACCGGAGT-GATCCCCGACTTGCGCATTCTG
185 G----GTAGCAGGATCGGTAGCACGCAGGG-GGGACC--AGTCGATTCCCGGCTTACGCATTCTG
* *
13665876 CCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGGGGGTTGGCTTAGGCATACGGAGTTCAT
243 CCTCTTCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
13665941 TTCATGTCTAAGCCCCAACCGAATCGAGGGTTATGGTAGTAGGAC
308 TCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGAC
* * * * * *
13665986 AGGCAACGAGATC-AGCAGCATGCAGAGAGGGACCGGGCTGATCTCTGGCTTACGCATTATACCT
1 CGGCAGCGGGATCGA-CAGCATGCA-AGGGGGACCGGGCTGATCCCCGGCTTACGCATTATACCT
* * **
13666050 CTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCC
64 CTCCGACCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CC
* * *
13666115 CAATCTAACCATACGGAGTTCATTCCCAGTCTAAGATC-GATCCGAACTGAGGGCTGCGGTAGCA
128 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACCGAGGGCTGCGGTAGCA
* *
13666179 GGATCGGTAGCACGTAGGGGGGACCAAGTCGATTCCCGGCTTACGCATTGTGCCTCTTCGGTCGG
192 GGATCGGTAGCACGCAGGGGGGACC-AGTCGATTCCCGGCTTACGCATTCTGCCTCTTCGGTCGG
* * * *
13666244 TTGAGCGCCCGCACGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
256 TTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* *
13666309 CCTAGCCGGACCGAGGGTTGTGGCAGCAGGAC
321 CCCAGCCGAACCGAGGGTTGTGGCAGCAGGAC
* * * * *
13666341 CGGCAGCGGGATCGACAGCATGCAAAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCGTC
1 CGGCAGCGGGATCGACAGCATGC-AAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATACCTC
** * * * *
13666406 TCCGATTGGCTGAGCGCCCGCACACTCGATTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCC
65 TCCGACCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCC
* * * * * **
13666471 AGTCTAAGCATGCGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGG
129 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGCTGCGGTAGCAGG
** * * * * * ** * * * * *
13666536 ATCGACAGCACGCAGGGGGGATCGGGCTAGTCCTCGGCTTACTTATTTTGCCTTTTCGGCCAGCT
194 ATCGGTAGCACGCAGGGGGGACCAGTCGATTCC-CGGCTTACGCATTCTGCCTCTTCGGTCGGTT
* * *
13666601 GAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCC
258 GAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
*
13666666 CAGCCGAACCGAAGGTTGTGG
323 CAGCCGAACCGAGGGTTGTGG
13666687 TAGCGAGACT
Statistics
Matches: 585, Mismatches: 104, Indels: 36
0.81 0.14 0.05
Matches are distributed among these distances:
354 9 0.02
355 394 0.67
356 27 0.05
360 1 0.00
362 2 0.00
363 1 0.00
365 2 0.00
366 1 0.00
367 21 0.04
368 121 0.21
369 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (352 bp):
CGGCAGCGGGATCGACAGCATGCAAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATACCTCT
CCGACCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGCTGCGGTAGCAGGAT
CGGTAGCACGCAGGGGGGACCAGTCGATTCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAG
CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
CCGAACCGAGGGTTGTGGCAGCAGGAC
Found at i:13667003 original size:26 final size:26
Alignment explanation
Indices: 13666953--13667005 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13666943 GTTGGCTTAG
*
13666953 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13666979 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13667005 G
1 G
13667006 ATCAGGTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13667416 original size:26 final size:26
Alignment explanation
Indices: 13667380--13667432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13667370 GTTGACTTAG
13667380 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13667406 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13667432 G
1 G
13667433 ATCGGGTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13667597 original size:26 final size:26
Alignment explanation
Indices: 13667568--13667618 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13667558 TTTCATGGGT
*
13667568 TGTCTTAAGCAT-TGGAGTTCATTCCA
1 TGTC-TAAGCATACGGAGTTCATTCCA
13667594 TGTCTAAGCATACGGAGTTCATTCC
1 TGTCTAAGCATACGGAGTTCATTCC
13667619 CATTCAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
TGTCTAAGCATACGGAGTTCATTCCA
Found at i:13667986 original size:26 final size:26
Alignment explanation
Indices: 13667956--13668008 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13667946 GCTGACTTAG
13667956 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13667982 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13668008 G
1 G
13668009 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13668492 original size:26 final size:26
Alignment explanation
Indices: 13668463--13668512 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13668453 GGCTTAGGCA
13668463 TACGGAGTTCA-TTCCATGTCTAAGCT
1 TACGGAGTTCATTTCCA-GTCTAAGCT
13668489 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTTCATTTCCAGTCTAAG
13668513 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTTCCAGTCTAAGCT
Found at i:13668901 original size:873 final size:880
Alignment explanation
Indices: 13667472--13669383 Score: 2184
Period size: 873 Copynumber: 2.2 Consensus size: 880
13667462 GGACCAGCAA
* * * * * * *
13667472 TAGGATCGACAGCACGGAGGGGGGA-TCGGGCCGATCCCTGGCTTATGCATTCTGCCTCTCCGGT
1 TAGGATCGACAGCACGCAGGGGGGACT-AGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGAT
* * * * * * *
13667536 CAGTTGAGCGCCCGTACGCTCG-T--TTCATGGGTTGTCTTAAGCAT-TGGAGTTCATTCCATGT
65 CAGTTGAGCACCCGCACGCACGCTCGTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * * * *
13667597 CTAAGCATACGGAGTTCATTCCCATTCAAAGATCAGACCGGACCGAGGGTTGCGACTACAGGACC
130 CTAAGCTTACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCAAGGATTGCGACTACAGGACC
* * * *
13667662 AGCAGTAGGATCAGCAGCCTGCAAGGAGGGACCGGGCTGATCCCCAACTTGCGAATTTTGCCTTT
195 AACAGTAGGATCAGCAGCCTACAAGGAGGGACCGGGCTGATCCCCAACTTGCGAATTCTGCCTCT
* * * *
13667727 CCTGCCGGCTGAACACCCGCAAGCTCGTTTCCTGGGTTGGCTTAGGCATGCGCAGTTCATTCCAT
260 CCGGCCGGCTGAACACCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCAT
* * *
13667792 GTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCGATAATCGGATTAGTAGCACGCAG
325 GTCTAAGCCCCAACCGGACCGAAGGTTGTGG-AGC--GA-CGAT-ATCGGATTAGCAGCACGCAG
* * * ** * *
13667857 AGTGGGATCGGGTTGATCCTCGGCTTACGCATTATGCCTCTTTGACAGTCCTTTCAGGCTGGCTG
385 AGTGGGACCGGGCTGATCCTCAGCTTACGCATTATGCCTCTCGGACAGACCTTCCAGGCTGGCTG
* * *
13667922 AGCGATCGTACGCTCGTTTCATGGGCTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
450 AGCGATCGTACGCTCGTTTCATGGGCTGACTTAGGCATACAAAATTCATCCCAAGTCTAAGCATA
*
13667987 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGA-AGCAGCAGGATCGACAGCAC
515 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGA-CAGCAGGATCGACAGCA-
* * * *
13668051 GT-C-GGGGGGACC-GAACAGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGTGCCC
578 -TACAGGAGGGACCGGAACA-ATCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCC
* ** *
13668113 GCACGTCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAA
641 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAA
* * *
13668178 TCGAGGGTTGTGGCAGCGAGACCGGCAGCACACAGAGGGGGATCGAGCCAATCCCCGGCTTGCGC
706 TCAAGGGTTGTGGCAGCGAGACCAGCAGCACACAGAGGGGGATCGAGCCAATCCCCGACTTGCGC
* *
13668243 ATTATGCCTC-TCTGGTCGGCTCAACGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATGCAG
771 ATTATGCCTCTTC-GGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* *** *
13668307 AGTTCATTCCCAGTCTAAGATCAAACCAGATTGAGGGTTACGGCAG
835 AGTTCATTCCCAGTCTAAGATCAAACCAAACCAAGGGTTACGGAAG
* *
13668353 TAGGATCGATAGCATGCAGGGGGGACTAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGATC
1 TAGGATCGACAGCACGCAGGGGGGACTAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGATC
*
13668418 GGTTGAGCACCCGCACGCACGCTCGTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 AGTTGAGCACCCGCACGCACGCTCGTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
13668483 TAAGCTTACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCAAGGATTGC-AGC-AGCAGGAC
131 TAAGCTTACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCAAGGATTGCGA-CTA-CAGGAC
** * *** *
13668546 CAACAGTAGGATTGGCAGCAC-ACAGAGG-GGGACTGGG-TCGATCCCTGGCTTGCGCATTCTGC
194 CAACAGTAGGATCAGCAGC-CTACA-AGGAGGGACCGGGCT-GATCCCCAACTTGCGAATTCTGC
* * *** * * *
13668608 CTCTCCGGTCGGTTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
256 CTCTCCGGCCGGCTGAACACCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATT
** *
13668673 CCATGTCTAAGCCCCAGTCGGACCGAAGGTTGT-G-GC-A-G-T-T-GGATTGGCAGCACGCAGA
321 CCATGTCTAAGCCCCAACCGGACCGAAGGTTGTGGAGCGACGATATCGGATTAGCAGCACGCAGA
** * *
13668731 G-GGGTACCGGGCTGATCC-CTAGCTTGTGCATTATGCCTCTCCGGTC-GACCTCTCCAGTC-GG
386 GTGGG-ACCGGGCTGATCCTC-AGCTTACGCATTATGCCTCT-CGGACAGACCT-TCCAGGCTGG
* * * *
13668792 CTGAGCG-CCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAATTCATCCCAAGTCTAAT
447 CTGAGCGATC-GTACGCTCGTTTCATGGGCTGACTTAGGCATACAAAATTCATCCCAAGTCTAAG
*
13668856 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
511 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGACAGCAGGATCGACAG
** * * *
13668921 CATACAGGAGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGGTTGGCTGAGCGCCC
576 CATACAGGAGGGACCGGAACAATCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCC
* ****
13668986 GCACGCCCATTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGA
641 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAA
* * ** * * *
13669051 TCAAGGGTTGTGGCAGCGGGACCAGTAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTGCGC
706 TCAAGGGTTGTGGCAGCGAGACCAGCAGCACACAGAGGGGGATCGAGCCAATCCCCGACTTGCGC
* * * * **
13669116 ATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTTGTTGGTTGACTTATGCATATGGA
771 ATTATGCCTCTTCGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* * **
13669181 GTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGGTTGTGGAAG
836 GTTCATTCCCAGTCTAAGATCAAACCAAACCAAGGGTTACGGAAG
* ** * * * * *
13669226 TATGATCGACAGCACATAGGGGGGACCGAGCT-GATCCCCGGCTTGCGCATTCTACCTC-TCTAT
1 TAGGATCGACAGCACGCAGGGGGGA-CTAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGAT
* * * *
13669289 CAGCTGAGCA--C-C-TGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
65 CAGTTGAGCACCCGCACGCACGCTCGTTCT-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
13669350 TCTAAG-TGTACGGAGTTCA-TTCCTAGTCTAAGAT
129 TCTAAGCT-TACGGAGTTCATTTCC-AGTCTAAGAT
13669384 TTTGAGCCAC
Statistics
Matches: 874, Mismatches: 133, Indels: 60
0.82 0.12 0.06
Matches are distributed among these distances:
868 16 0.02
869 62 0.07
870 1 0.00
871 1 0.00
872 18 0.02
873 460 0.53
874 18 0.02
876 1 0.00
877 1 0.00
879 1 0.00
881 71 0.08
882 4 0.00
884 22 0.03
885 194 0.22
886 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (880 bp):
TAGGATCGACAGCACGCAGGGGGGACTAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGATC
AGTTGAGCACCCGCACGCACGCTCGTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCTTACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCAAGGATTGCGACTACAGGACCA
ACAGTAGGATCAGCAGCCTACAAGGAGGGACCGGGCTGATCCCCAACTTGCGAATTCTGCCTCTC
CGGCCGGCTGAACACCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCATG
TCTAAGCCCCAACCGGACCGAAGGTTGTGGAGCGACGATATCGGATTAGCAGCACGCAGAGTGGG
ACCGGGCTGATCCTCAGCTTACGCATTATGCCTCTCGGACAGACCTTCCAGGCTGGCTGAGCGAT
CGTACGCTCGTTTCATGGGCTGACTTAGGCATACAAAATTCATCCCAAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGACAGCAGGATCGACAGCATACAGGAG
GGACCGGAACAATCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCAT
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAATCAAGGGTTG
TGGCAGCGAGACCAGCAGCACACAGAGGGGGATCGAGCCAATCCCCGACTTGCGCATTATGCCTC
TTCGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
AGTCTAAGATCAAACCAAACCAAGGGTTACGGAAG
Found at i:13669240 original size:159 final size:157
Alignment explanation
Indices: 13668856--13669355 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 157
13668846 CAAGTCTAAT
* * *
13668856 CATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTG-CGACAGCAGGATCGAC
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTGTGGA-AGCAGGATCGAC
* * * *
13668919 AGCA-TACAGGAGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGGTTGGCTGAGCG
64 AGCACTAGAGG-GGGACCGGG-CGATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCG
* * **
13668983 CCCGCACGCCCATTTCATTGGTTGGCTTAGG
127 CCCGCACGCTCGTTTTGTTGGTTGGCTTAGG
* ** * * * * * *
13669014 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGATCAAGGGTTGTGGCAGCGGGA-CCAGT
1 CATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCAAGGGTTGTGGAAGCAGGATCGA-C
* * * *
13669077 AGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCG
64 AGCAC-TAGAGGGGGACCGGG-CGATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCG
* *
13669142 CCCGCACGCTCGTTTTGTTGGTTGACTTATG
127 CCCGCACGCTCGTTTTGTTGGTTGGCTTAGG
* ** * *
13669173 CATATGGAGTTCATTCCCA-GTCTAAGATCAGATCAAACCAAGGGTTGTGGAAGTATGATCGACA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTGTGGAAGCAGGATCGACA
* * ** * *
13669237 GCACATAG-GGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTACCTC-TCTATCAGCTGAGCAC
65 GCAC-TAGAGGGGGACCGGGC-GATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCGC
* * *
13669300 CTGCATGCTCGTTTTGTGGGTTGGCTTAGG
128 CCGCACGCTCGTTTTGTTGGTTGGCTTAGG
13669330 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
13669356 TGTACGGAGT
Statistics
Matches: 274, Mismatches: 57, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 63 0.23
158 77 0.28
159 121 0.44
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCAAGGGTTGTGGAAGCAGGATCGACAG
CACTAGAGGGGGACCGGGCGATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCGCCCG
CACGCTCGTTTTGTTGGTTGGCTTAGG
Found at i:13669368 original size:26 final size:26
Alignment explanation
Indices: 13669332--13669381 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13669322 GGCTTAGGCA
13669332 TACGGAGTTCATTCC-ATGTCTAAGTG
1 TACGGAGTTCATTCCTA-GTCTAAGTG
13669358 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
13669382 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGTG
Found at i:13670078 original size:26 final size:26
Alignment explanation
Indices: 13670048--13670101 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13670038 TGGGTTGACT
*
13670048 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAATC
*
13670074 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGGAGTTCATCCCCAATC
13670100 TA
1 TA
13670102 AGATCGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAATC
Found at i:13670349 original size:158 final size:157
Alignment explanation
Indices: 13670165--13670580 Score: 385
Period size: 158 Copynumber: 2.6 Consensus size: 157
13670155 GACCGAAACG
* * * *
13670165 ATCCCCAGCTTGGGCATTTTGCCTCTCCGGCCGGCTGAGTGCCCATGTGCCTGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTG-CCATGTGCCTGTTTCATGGGTTG
* * * *
13670230 GCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGACCGAGGGTTGTGGCAGCGA-G
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGACAGAGGGTTGTGGCAGC-ATG
* * *
13670293 ACCGACAGCACGCAGAGGGGGACCGGGCTA
129 ACCAACAGCACGCAG-GGGGGACCAGGCCA
* * * * * * ** *
13670323 ATCCTCGGCTTGTGCATTATGCCTCTCCGGTCAGCTCAATG-AATGCATGCCCATTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCATG--TGCCTGTTTCATGGGTT
* * * *
13670387 GACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACAGAGGGTTGTGGCAGCA
64 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA-CCGACAGAGGGTTGTGGCAGCA
* * * *
13670450 TGATCAACAGCATGCAGGGGGGACTAGGCCG
127 TGACCAACAGCACGCAGGGGGGACCAGGCCA
* * * * * *
13670481 ATCCCCGACTTACGCATTCTGTCTCTCCGGTCGGCTGAGCGCC-TGTACGCTCGTTTCATGGGTT
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCATGTGC-CT-GTTTCATGGGTT
* *
13670545 GGCTTAGTCATACGGAGTTTATTCCATGTCTAAGCA
64 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13670581 TACGGAGTTC
Statistics
Matches: 201, Mismatches: 46, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
156 5 0.02
157 7 0.03
158 153 0.76
159 36 0.18
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
ATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCATGTGCCTGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGACAGAGGGTTGTGGCAGCATGAC
CAACAGCACGCAGGGGGGACCAGGCCA
Found at i:13670582 original size:26 final size:26
Alignment explanation
Indices: 13670553--13670604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13670543 TTGGCTTAGT
*
13670553 CATACGGAGTTTATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
13670579 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
13670605 ATCGTACCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:13670960 original size:26 final size:26
Alignment explanation
Indices: 13670931--13670983 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13670921 GTTGACTTAG
13670931 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13670957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13670983 G
1 G
13670984 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13678008 original size:315 final size:314
Alignment explanation
Indices: 13677428--13678551 Score: 1494
Period size: 315 Copynumber: 3.6 Consensus size: 314
13677418 CCAGTCTAAC
* * * * ** * **
13677428 CATACGAAGTTCATTCCCAGTCCAAGATCGGACCAGGCCGAGGGTTG-CGACAATAGGATCGGTA
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAG-CAGCAAGATCGACA
* * * * *
13677492 GCATGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCTTCTCCGGCCGGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCAGGCTGAGCGCC
* *
13677557 CACACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
130 CACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
* * * ** *
13677622 CCGAGGGTTGTGGTAGCGGGACCAGCAGCACGCAGAGGGGGACCCGGCCAATCCCCGACTTATGG
195 CCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGAT-CCCGACTTGCGC
* *
13677687 ATTATGCCTCTCCGGTCGGCTCAGCACCTGCACGCTCATTTCATAGGTTGACTTAGG
259 ATTATGCCTCTCCGG-CGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGG
* * * *
13677744 GATACGAAGTTCATTCGCAGTATAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGACGG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGACAG
* * * *
13677809 CATGCA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCAAGCTGAGCACCC
66 CACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCAGGCTGAGCGCCC
* * * *
13677873 GCACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGAC
131 ACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGAC
*
13677938 CGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCTGATCTCCGACTTGCGCA
196 CGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATC-CCGACTTGCGCA
* * * * *
13678003 TTATGCCTCTTCAGCTGGCTCAGCGCTTGCACGCTCGTTTCGTGGGTTGACTTAGG
260 TTATGCCTCTCCGGC-GGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGG
* * * *
13678059 CATACGGAGTTCATTCCCAGTCTAAGATC-G----GACCGAGGGTTGAAGCAGCAGGATTGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGACAG
* * *
13678119 CACGCAGGGGGGATCGGGTCGATCCCCGGCTTACGCAATCTGCCTCTCCGGTC-GGCTGAGCTCC
66 CACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGG-CAGGCTGAGCGCC
* * *
13678183 CGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
130 CACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
* *
13678248 CCGAAGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCGC
195 CCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATCCC-GACTTGCGC
*
13678313 ATTATGCCTCTCCGGCCGGCTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGG
259 ATTATGCCTCTCCGG-CGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGG
*
13678370 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGACAG
* * * * * * * *
13678435 CACGTA-GGGGGATCGAGCCAATCCTCGGCTTACGTATTCTGCCTCTCCGATC-GCCTGAGCGCT
66 CACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCG-GCAGGCTGAGCGCC
* * *
13678498 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
13678552 CCATACTGAG
Statistics
Matches: 712, Mismatches: 83, Indels: 27
0.87 0.10 0.03
Matches are distributed among these distances:
310 33 0.05
311 250 0.35
312 3 0.00
314 3 0.00
315 334 0.47
316 88 0.12
317 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (314 bp):
CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCAGGCTGAGCGCCC
ACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGAC
CGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATCCCGACTTGCGCAT
TATGCCTCTCCGGCGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGG
Found at i:13678761 original size:26 final size:26
Alignment explanation
Indices: 13678725--13678775 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13678715 TGACTTAGGT
*
13678725 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
* *
13678751 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
13678776 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Done.