Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 74 of 138
Found at i:13679223 original size:158 final size:158
Alignment explanation
Indices: 13678749--13679250 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
13678739 CCCAGTCTAA
* * ** *
13678749 GCATACGAAGTTCATTCCTA-GTCTAAGATCAGACCGGATCGAGGGTTGCAACAGTAGGATCGAC
1 GCATACGGAGTTCACTCC-ACGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGAT
** * * * * *
13678813 AGCACGCAGGGGGGATCAAGCCGATCCCCGGCTTACGCATTCTTCCTCTTCGGCTT--GCTGAGT
65 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTC-TCCG-TTCAGCTAAGC
*
13678876 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * ** *
13678907 GCATAGGGAGTTCACTCCACGTTTAAGCCCCAG-TCGGACCAAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGGAGTTCACTCCACGTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGAT
* * **
13678971 AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGCCAGCTCAA-C
65 AGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGTTCAGCT-AAGC
* * ** *
13679035 GCCCGTACGCTCATTTTGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
13679066 GCATACGGAGTTCACTCCTA-GTCTAAGATCAGACCGAATCGAGGGTTGCGGCTGTAGGATCGAT
1 GCATACGGAGTTCACTCC-ACGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGAT
* * ** *
13679130 AGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGTATTCTACCTCTCCGTTCAGCTAAGCGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGTTCAGCTAAGCGC
*
13679195 CTGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
13679224 GCACACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCACTCCACGTCTAAG
13679251 CATATAGAGT
Statistics
Matches: 272, Mismatches: 62, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 147 0.54
159 119 0.44
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCACTCCACGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGATA
GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGTTCAGCTAAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13679432 original size:697 final size:691
Alignment explanation
Indices: 13678058--13679447 Score: 1735
Period size: 697 Copynumber: 2.0 Consensus size: 691
13678048 GTTGACTTAG
* *
13678058 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGGGTTGAAGCAGCAGGATTGACAGCACG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAGGGTTGAAGCAGCAGGATCGACAGCACG
** *
13678123 CAGGGGGGATCGGGTCGATCCCCGGCTTACGCAATCTGCCTCTCCGGTCGGCTGAGCTCCCGCAC
66 CAGGGGGGATCAAGCCGATCCCCGGCTTACGCAATCTGCCTCTCCGGTCGGCTGAGCTCCCGCAC
* * *
13678188 ACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAA
131 ACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCACGTCTAAGCCCAGCCGGACCGAA
*
13678253 GGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTAT
196 GGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACGCATTAT
* ** *
13678318 GCCTCTCCGGCCGGCTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
261 GCCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * *
13678383 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGACAGCACGTAGGGGGAT
326 CTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGGAC
* *
13678448 CGAGCCAATCCTCGGCTTACGTATTCTGCCTCTCCGATCGCCTGAGCGCTCACACGCTCGTTTCA
391 CGAGCCAATCCTCGGCTTACGTATTCTACCTCTCCGATCGCCTAAGCGCTCACACGCTCGTTTCA
* * *
13678513 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCATACTGAGTTCATTCCCAGTCTAG
456 TGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAACCATACTGAGTTCATTCCCAATCTAA
* * * ** * * ** * * *
13678578 GGTCGAACCAGATCGAGGGTTACGGTAGCAGGACCAGCAGTAGCATCGGTAGCATGCAGGGGGGG
521 GATCGAACCAGACCAAGGGTTACGACAACAGGACCAGCAGCAGCATCGACAGCACGCAGAGGAGG
** * * * * *
13678643 ACTGGGTTGATCCCCGGCTTGCGCATTATGCCTTTCCGACCGACTGGGTGCCCACACGCTCGTTT
586 ACTGGGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGACTGAGTGCCCACACGCTCGTTT
* *
13678708 CGTGGGTTGACTTAGGTATACGGAGTTCATCCCCA-GTCTAA
651 CATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* * *
13678749 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAA-CAGTAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-----CGGACCGAGGGTTG-AAGCAGCAGGATCGAC
* * * *
13678813 AGCACGCAGGGGGGATCAAGCCGATCCCCGGCTTACGCATTCTTCCTCTTCGG-CTTGCTGAG-T
60 AGCACGCAGGGGGGATCAAGCCGATCCCCGGCTTACGCAATCTGCCTCTCCGGTC-GGCTGAGCT
* * * *
13678876 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCACGTTTAAGCCCCAGT
124 -CCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCACGTCTAAG-CCCAGC
* * *
13678941 CGGACC-AAGGGTTGTGGCAGCGGGACC-GATAGCACGCAGAGGGGGATCGGGCCGATCCCTGGC
187 CGGACCGAA-GGTTGTGGCAGCGGGACCAG-CAGCACGCAGAGGGGGACCGGGCCGATCCCTGAC
* **
13679004 TTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCA
250 TTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCA
* * * * * * *
13679069 TACGGAGTTCACTCCTAGTCTAAGATCAGACC-GAATCGAGGGTTGCGGCTGTAGGATCGATAGC
315 TACGGAGTTCACTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCAAGATCGACAGC
* * * ** *
13679133 ACGCAGGGGGGACCGGGTCGATCC-CTGGCTTGTGTATTCTACCTCTCCGTTCAG-CTAAGCGC-
379 ACGCA-GGGGGACCGAGCCAATCCTC-GGCTTACGTATTCTACCTCTCCGATC-GCCTAAGCGCT
* *
13679195 CTGCACGCTCGTTTCATGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCATA-TAGA
441 C-ACACGCTCGTTTCATGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAACCATACT-GA
* * * *
13679259 GTTCA-TCCCAATCTAAGATCGGACCGGACCAAGGGTTACGACAATAGGACCAGCAGCAGGATCG
504 GTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTACGACAACAGGACCAGCAGCAGCATCG
* * *
13679323 ACAGCACGCAGAGGAGGA-TCGGGCCGATCCCCAGTTTACTCATTCTACCTCTCCGACCGACTGA
569 ACAGCACGCAGAGGAGGACT-GGGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGACTGA
* * * * *
13679387 GTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
633 GTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
13679446 GC
1 GC
13679448 CCCAATCGGA
Statistics
Matches: 593, Mismatches: 87, Indels: 32
0.83 0.12 0.04
Matches are distributed among these distances:
691 27 0.05
695 2 0.00
696 136 0.23
697 322 0.54
698 105 0.18
699 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (691 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAGGGTTGAAGCAGCAGGATCGACAGCACG
CAGGGGGGATCAAGCCGATCCCCGGCTTACGCAATCTGCCTCTCCGGTCGGCTGAGCTCCCGCAC
ACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCACGTCTAAGCCCAGCCGGACCGAA
GGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACGCATTAT
GCCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
CTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGGAC
CGAGCCAATCCTCGGCTTACGTATTCTACCTCTCCGATCGCCTAAGCGCTCACACGCTCGTTTCA
TGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAACCATACTGAGTTCATTCCCAATCTAA
GATCGAACCAGACCAAGGGTTACGACAACAGGACCAGCAGCAGCATCGACAGCACGCAGAGGAGG
ACTGGGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGACTGAGTGCCCACACGCTCGTTT
CATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:13679640 original size:26 final size:26
Alignment explanation
Indices: 13679604--13679656 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13679594 GTTGACTTAG
* *
13679604 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13679630 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13679656 G
1 G
13679657 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13680193 original size:880 final size:872
Alignment explanation
Indices: 13678697--13680995 Score: 2974
Period size: 879 Copynumber: 2.6 Consensus size: 872
13678687 TGGGTGCCCA
*
13678697 CACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATAC-GAAGTT
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG-AGTT
* * * * * * **
13678761 CATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAACAGTAGGATCGACAGCACGCAGGGGG
65 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTT-C--TAGCAGGAT-GGTAGCACG-A-GGGG
* ** * * * * * * *
13678826 GATCAAGCCGATCCCCGGCTTACGCATTCTTCCTCTTCG-GCTTGCTGAGTGCCCGCACGCCCGT
124 GACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATC-GGCTGAGCGCCTGCACGCCCGT
* * * * * * *
13678890 TTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCACGTTTAAGCCCCAGTCGGACCAAGGGTTG
188 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAG-CGGACTAAGGGTTA
* * *
13678955 TGGCAGCGGGACCGATAGCACGCAGAGGGGGATCGGGCCGATCC-CTGGCTTACGCATTATGCCT
252 TGGCAGCGGGACCGGTAGCACGCAGAGAGGGATCGAGCCGATCCTC-GGCTTACGCATTATGCCT
* * * * * *
13679019 CTCCGGCCAGCTCAACGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCACTCC
316 CTTCGGCCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
13679084 TAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCTGTAGGATCGATAGCACGCAGGGGGGACCGG
381 TAGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGA-CGG
* * * * *
13679149 GTCGATCCCTGGCTTGTGTATTCTACCTCTCCGTTCAGCTAAGCGCCTGCACGCTCGTTTCATGG
445 GTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCATGG
* *
13679214 GTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATCCCAATCTAAGATC
510 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATCCCAATCTAAGATC
*
13679279 GGACCGGACCAAGGGTTACGACAATAGGACCAGCAGCAGGATCGACAGCACGCAGAGGAGGATCG
575 GGACCGGACCAAGGGTTACGACAATAGGACCAGCAGCAGGATCGACAGCACACAGAGGAGGATCG
13679344 GGCCGATCCCCAGTTTACTCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTTGTTTCATG
640 GGCCGATCCCCAGTTTACTCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTTGTTTCATG
* * *
13679409 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGCTGTTGCAG
705 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA-CCCCAACCAGACCAAGGGCTGTTGCAG
* *
13679474 CAGGACCGGCAGCTGGATCCACAACACGCAGAGGGGGACCAGGCTGATCCCCAGCTTGAGTATTA
769 CAGGACCGGCAGCTGGATCCACAACACGCAAAGGAGGACCAGGCTGATCCCCAGCTTGAGTATTA
* * **
13679539 TGTCTTTTCGATC-GACCTCTCCGGCCGGCTGAGCGTCTG
834 TGCCTCTTCGATCAG-CCTCTCCGGCCGGCTGAGCACCTG
13679578 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
*
13679643 ATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATTGGTAGCACGAGGGGGAC
66 ATTCCCAATCTAAGATCGGACCGGACCGAGGGTT-C--TAGCAGGA-TGGTAGCACGAGGGGGAC
*
13679708 CGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCTGCACGCCCGTTTTG
127 CGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCTGCACGCCCGTTTCG
* * *
13679773 TGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTATGCCCTAGCCGGACTGAGGGTTATGGC
192 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAG-CGGACTAAGGGTTATGGC
* * * * * * * *
13679838 AACGAGACCGGCAGCACACAGAGAAGGATCGAGTCGATCCTCGGCTTGCGCGTTATGCCTCTTCG
256 AGCGGGACCGGTAGCACGCAGAGAGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTCG
* *
13679903 GCCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGCTCATTCCTGGTC
321 GCCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
* * * *
13679968 TAAGATCAGACCGGATCGAGGGTTGTGACAGCAGGATTGACAGTACACAGGAGGGGATCGGGTCG
386 TAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGG-GGGGA-CGGGTCG
*
13680033 ATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCTTGCACGCTCGTTTCATGGGTTG
449 ATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTG
*
13680098 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATCCCAATCTAAGATCGGAC
514 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATCCCAATCTAAGATCGGAC
* * * * *
13680163 CGGACCAAGGGTTGCGACAGTAGGACCAGCAGTAGGATCGATAGCACATAGAGGAGGATCGGGCC
579 CGGACCAAGGGTTACGACAATAGGACCAGCAGCAGGATCGACAGCACACAGAGGAGGATCGGGCC
** * * * * * *
13680228 GATCCCTGGTTTACTCATTGTACCTCTCCGATCGGCTGAGTGCCTGCACTCTTGTTTCGTGGGTT
644 GATCCCCAGTTTACTCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTTGTTTCATGGGTT
* * * *
13680293 GGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCAACCAGACCGAGGGTTGTTGTAGTAGGA
709 GGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCAACCAGACCAAGGGCTGTTGCAGCAGGA
** * * * * *
13680358 CCGGCAGCTGGATCGGCAGCACGCAAAGGAGGATCGGGCTGATCCCTAGCTTGCGTATTATGCCT
774 CCGGCAGCTGGATCCACAACACGCAAAGGAGGACCAGGCTGATCCCCAGCTTGAGTATTATGCCT
* * * * *
13680423 CTTCGGTCAGCCTCTCTGGTCTGTTGAGCACCTG
839 CTTCGATCAGCCTCTCCGGCCGGCTGAGCACCTG
* * *
13680457 TACGCTC-ATTCGGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACAGAGTT
1 CACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
13680521 CATTCCCAATCTAAGATCGGACCGGACCGAGGG-T-TA-C-----GGTAGCACGAGGGGGACCGG
65 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTCTAGCAGGATGGTAGCACGAGGGGGACCGG
* * * *
13680578 GCCGATCCTTGGCTTGCGCATTCTGCCTCTTCGATTGGCTAAGCACCTGCACGCCCGTTTCGTGG
130 GCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCTGCACGCCCGTTTCGTGG
* *
13680643 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCGAAACTAAAGGTTATGGCAGC
195 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCG-GACTAAGGGTTATGGCAGC
* * * * * *
13680708 GGGATCAGTAGCACGTAGAGAGGGATCGAGCCCATCCTTGGCTTACGCATTATGCCTC-TCTGGT
259 GGGACCGGTAGCACGCAGAGAGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTC-GGC
* * * * *
13680772 CGGCTCAGCACCCGCACGCTCATTTCGTGGGTTCACTTATGCATATGGAGTTCATTCCCAGTCTA
323 CGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
** * * * * * *
13680837 AGATTGGACCAAACCAAGGGTTGTGGTAGCAGGATCGACAGCATA-AGGGGGGACTAGGTCGATC
388 AGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGAC-GGGTCGATC
* ** * * * *
13680901 CCCGGCTTGCACATTCTGCCTCACCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
452 CCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCT
* *
13680966 T-GGCATAGGGAGTTCATTCCATGTGTAAGC
517 TAGGCATACGGAGTTCATTCCATGTCTAAGC
13680996 CCCAGTCGGA
Statistics
Matches: 1238, Mismatches: 170, Indels: 37
0.86 0.12 0.03
Matches are distributed among these distances:
864 27 0.02
865 71 0.06
866 7 0.01
867 276 0.22
873 1 0.00
874 2 0.00
878 4 0.00
879 458 0.37
880 285 0.23
881 105 0.08
882 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (872 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
ATTCCCAATCTAAGATCGGACCGGACCGAGGGTTCTAGCAGGATGGTAGCACGAGGGGGACCGGG
CCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCTGCACGCCCGTTTCGTGGG
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCGGACTAAGGGTTATGGCAGCGG
GACCGGTAGCACGCAGAGAGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCGG
CTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
TCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGACGGGTCGATCCCTG
GCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATCCCAATCTAAGATCGGACCGGACCA
AGGGTTACGACAATAGGACCAGCAGCAGGATCGACAGCACACAGAGGAGGATCGGGCCGATCCCC
AGTTTACTCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAACCCCAACCAGACCAAGGGCTGTTGCAGCAGGACCGGCAG
CTGGATCCACAACACGCAAAGGAGGACCAGGCTGATCCCCAGCTTGAGTATTATGCCTCTTCGAT
CAGCCTCTCCGGCCGGCTGAGCACCTG
Found at i:13680512 original size:26 final size:26
Alignment explanation
Indices: 13680483--13680535 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13680473 GTTGACTTAG
* * *
13680483 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13680509 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13680535 G
1 G
13680536 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13681093 original size:315 final size:317
Alignment explanation
Indices: 13680588--13681313 Score: 938
Period size: 315 Copynumber: 2.3 Consensus size: 317
13680578 GCCGATCCTT
* * * * *
13680588 GGCTTGCGCATTCTGCCTCTTCGATTGGCTAAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13680653 GCATAGGGAGTTCATTCCATGTCTATGCCCCAGCGAAACTAAAGGTTATGGCAGCGGGATCAGTA
66 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGAAACCAAAGGTTATGGCAGCGGGACCAGTA
** * * *
13680718 GCACGTAGAGAGGGATCGAGCCCATCCTTGGCTTACGCATTATGCCTCTCTGGTCGGCTCAGCAC
131 GCACACAGAGAGGGATCGAGCCCATCCCTAGCTTACGCATTATGCCTCTCTGGCCGGCTCAGCAC
*
13680783 CCGCACGCTCATTTCGTGGGTTCACTTATGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCA
196 CCGCACGCTCATTTCGTGGGTTCACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * *
13680848 AACCAAGGGTTGTGGTAGCAGGATCGACAG-CATAAGGGGGGACTAGGTCGATCCCC
261 AACCAAGGGTTGTGGCAACAGGATCAACAGACACAAGGGGGGACTAGGTCGATCCCC
* *
13680904 GGCTTGCACATTCTGCCTCACCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT-G
1 GGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
13680968 GCATAGGGAGTTCATTCCATGTGTAAGCCCCAGTCG-GACCAAGGGTTGTTGCAGCGGGACCGGT
66 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGAAACCAAAGGTTATGGCAGCGGGACCAGT
* * * * *
13681032 AGCACACAGAGGGGGATCGGGTCGATCCCTAGCTTGCGCATTATGCCTCT-TCGGCCGGCTCAGC
130 AGCACACAGAGAGGGATCGAGCCCATCCCTAGCTTACGCATTATGCCTCTCT-GGCCGGCTCAGC
* * ** *
13681096 GCCCGGACGCTTGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
194 ACCCGCACGCTCATTTCGTGGGTTCACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
13681161 CGAATCGAGGGTTGTGGCAACAGGATCAACAGCACACAAGGGGGGAGTTGGTCGATCCTC
259 CAAACCAAGGGTTGTGGCAACAGGATCAACAG-ACACAAGGGGGGACTAGGTCGATCCCC
* ** * * * *
13681221 GGCTTACGCATTCTGCCTCTCCGGCTGCCTGAGCGCCCGTACGCTCGTTTTGTCGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
13681286 GCATATGGAGTTCATTCTATGTCTAAGC
66 GCATAGGGAGTTCATTCCATGTCTAAGC
13681314 ATACGGAGCT
Statistics
Matches: 351, Mismatches: 54, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
314 1 0.00
315 190 0.54
316 58 0.17
317 76 0.22
318 26 0.07
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (317 bp):
GGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGAAACCAAAGGTTATGGCAGCGGGACCAGTA
GCACACAGAGAGGGATCGAGCCCATCCCTAGCTTACGCATTATGCCTCTCTGGCCGGCTCAGCAC
CCGCACGCTCATTTCGTGGGTTCACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCA
AACCAAGGGTTGTGGCAACAGGATCAACAGACACAAGGGGGGACTAGGTCGATCCCC
Found at i:13681312 original size:159 final size:158
Alignment explanation
Indices: 13680741--13681302 Score: 537
Period size: 159 Copynumber: 3.6 Consensus size: 158
13680731 GATCGAGCCC
* * * *
13680741 ATCCTTGGCTTACGCATTATGCCTCTCTGG-TCGGCTCAGCACCCGCACGCTCATTTCGTGGGTT
1 ATCCTCGGCTTACGCATTATGCCTCTCCGGCT-GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
13680805 CACTTATGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCAAGGGTTGTGGTAGCAGG
65 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGTGGCAGCAGG
*
13680870 ATCGACAG--CATAAGGGGGGACTAGGTCG
130 ATCGACAGCACACAAGGGGGGA-TAGGTCG
* * * * * ** *
13680898 ATCCCCGGCTTGCACATTCTGCCTCACCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCTCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * ** * * * *
13680963 GCTT-GGCATAGGGAGTTCATT-CCATGTGTAAG-CCCCAGTCGGACCAAGGGTTGTTGCAGCGG
66 ACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGAACCAAGGGTTGTGGCAGCAG
* ** *
13681025 GACCGGTAGCACAC-AGAGGGGGATCGGGTCG
129 GATCGACAGCACACAAG-GGGGGAT-AGGTCG
* * * * * *
13681056 ATCC-CTAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGGACGCTTGTTTCGTGGGTT
1 ATCCTC-GGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
13681120 GACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGTGGCAACAGG
65 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGTGGCAGCAGG
* *
13681185 ATCAACAGCACACAAGGGGGGAGTTGGTCG
130 ATCGACAGCACACAAGGGGGGA-TAGGTCG
* * * * * *
13681215 ATCCTCGGCTTACGCATTCTGCCTCTCCGGCTGCCTGAGCGCCCGTACGCTCGTTTTGTCGGTTG
1 ATCCTCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
13681280 GCTTAGGCATATGGAGTTCATTC
66 ACTTAGGCATATGGAGTTCATTC
13681303 TATGTCTAAG
Statistics
Matches: 317, Mismatches: 74, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
155 4 0.01
156 45 0.14
157 58 0.18
158 69 0.22
159 132 0.42
160 9 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
ATCCTCGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGTGGCAGCAGGA
TCGACAGCACACAAGGGGGGATAGGTCG
Found at i:13681326 original size:26 final size:26
Alignment explanation
Indices: 13681286--13681338 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13681276 GTTGGCTTAG
* * * *
13681286 GCATATGGAGTTCATTCTATGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
13681312 GCATACGGAGCTCATTCCAAGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
13681338 G
1 G
13681339 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCAAGTCTAA
Found at i:13682044 original size:26 final size:26
Alignment explanation
Indices: 13682008--13682060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13681998 GTTGACTTAG
13682008 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13682034 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13682060 G
1 G
13682061 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13682727 original size:158 final size:159
Alignment explanation
Indices: 13682541--13682902 Score: 372
Period size: 158 Copynumber: 2.3 Consensus size: 159
13682531 CACATGCCCG
* * * * *
13682541 TTTCATGGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGT
* * * * * * * **
13682605 TGTGGTAGCGGGACC-AGCACCACGTAGAGGGGACCAGGTCGATCCCTGGCTTGCGCATTATGTG
66 TGCGGCAGCAGCACCGA-CACCACGTAGAGGGGACCAGGCCGAGCCCCGGCTTGCGCATTATGCC
* * **
13682669 TCTTCGGCCGGCTCAGTGCCTGCACGCTCA
130 TCTTCGACCGGCTAAGTGCCCACACGCTCA
* * * *
13682699 TTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGG
* * * * * * *
13682762 TTGCGGCAGCAGCATCGACAGCACGTAGGGGGGATCGGGCCGGGCCCCGGCTTGCGCATTTTGCC
65 TTGCGGCAGCAGCACCGACACCACGTAGAGGGGACCAGGCCGAGCCCCGGCTTGCGCATTATGCC
* **
13682827 TCTTCGATCGGCTAAGTGCCCACACGCTTG
130 TCTTCGACCGGCTAAGTGCCCACACGCTCA
* *
13682857 TTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13682903 GTATGGAGTT
Statistics
Matches: 163, Mismatches: 36, Indels: 9
0.78 0.17 0.04
Matches are distributed among these distances:
157 6 0.04
158 153 0.94
159 4 0.02
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGT
TGCGGCAGCAGCACCGACACCACGTAGAGGGGACCAGGCCGAGCCCCGGCTTGCGCATTATGCCT
CTTCGACCGGCTAAGTGCCCACACGCTCA
Found at i:13683539 original size:11 final size:11
Alignment explanation
Indices: 13683523--13683555 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13683513 CTCGGGGCAC
13683523 CATCGTCGGAG
1 CATCGTCGGAG
*
13683534 CATCGTCGGGG
1 CATCGTCGGAG
13683545 CATCGTCGGAG
1 CATCGTCGGAG
13683556 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.27, G:0.39, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13684458 original size:159 final size:159
Alignment explanation
Indices: 13684159--13684856 Score: 664
Period size: 159 Copynumber: 4.4 Consensus size: 159
13684149 CCTAGTCTAA
* * * * * ** *
13684159 GCATACGAAGTTCATTCCCA-ATCTAAGAT-CAGACCAGACCGAAGGTTGTGGCAG-TAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCTCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * *
13684221 CAGCACGCA-A-GGGGATTGGGAT-GATCCCCGGCTTACGTATTCTGCCTCTCCGGCCGGCTGAG
64 CAGCACGAAGAGGGGGATCGGG-TCGATCCCCAGCTTGCGTATTATGCCTCTCCGACCGGCTGAG
* * *
13684283 CGCCCGCATGCCCATTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCATTTCATGGGTTGACTTAG
* *
13684315 GCATAGGGAGTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCTGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACA
* * * * * * *
13684380 GCAGGTAGAGGGGGATTGGGTCGATCCCCAGCTTGCATATTATGCATCTTCGACCGGCTGAGTGC
66 GCACGAAGAGGGGGATCGGGTCGATCCCCAGCTTGCGTATTATGCCTCTCCGACCGGCTGAGCGC
* *
13684445 CTGCATGCTCATTTCATGGGTTGACTTAG
131 CCGCACGCTCATTTCATGGGTTGACTTAG
* * *
13684474 GCATAGGGAGTTCATTCCATGTCTAAGC-CCAGCTGGACCGAGGGTTGTGGCGGCGGGACC-AGC
1 GCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGA-C
* * * * * * * * *
13684537 AGCACGCAGAGAGGGACCAGGCCGAT-CCCTGACTTGCG-ATTATGCCTCTCCGATCGGCTCAGT
65 AGCACGAAGAGGGGGATCGGGTCGATCCCCAG-CTTGCGTATTATGCCTCTCCGACCGGCTGAGC
* *
13684600 GCCTGCACACTCATTTCATGGGTTGACTTAG
129 GCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * * *
13684631 GCATACGGAGTTCATTCTCA-GTCTAAGAT-CGGACCGGACTGAGGGTTGTGGCAGCAGAATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGCTCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * * *
13684694 CAGCATGAAGGGGGGGATCGGGTCGGTCCCTAGCTTGCGCATTTTGCCTCTCTGACCGGCTGAGC
64 CAGCACGAAGAGGGGGATCGGGTCGATCCCCAGCTTGCGTATTATGCCTCTCCGACCGGCTGAGC
* * *
13684759 ACCCGCACGCTCATTTCGTGGGTTGCCTTAG
129 GCCCGCACGCTCATTTCATGGGTTGACTTAG
** * * * * *
13684790 GCATACAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACA
13684855 GC
66 GC
13684857 GAGATCGGCA
Statistics
Matches: 448, Mismatches: 78, Indels: 29
0.81 0.14 0.05
Matches are distributed among these distances:
155 3 0.01
156 39 0.09
157 95 0.21
158 108 0.24
159 201 0.45
160 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACA
GCACGAAGAGGGGGATCGGGTCGATCCCCAGCTTGCGTATTATGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:13685006 original size:26 final size:26
Alignment explanation
Indices: 13684977--13685026 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13684967 GACTTAGGCC
13684977 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
13685003 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
13685027 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:13685281 original size:26 final size:26
Alignment explanation
Indices: 13685250--13685302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13685240 GAGGGTTACG
*
13685250 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
13685276 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
13685302 G
1 G
13685303 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:13685489 original size:26 final size:26
Alignment explanation
Indices: 13685459--13685511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13685449 GTTGACTTAG
13685459 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
13685485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13685511 G
1 G
13685512 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13685786 original size:159 final size:158
Alignment explanation
Indices: 13685485--13685816 Score: 360
Period size: 159 Copynumber: 2.1 Consensus size: 158
13685475 CCCAGCCTAA
* * * * **
13685485 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGGACCGAGGGTTGTGGCAGCAAGACCGACA
* * *
13685550 GCACACAGGGGGGACCAAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGTGCC
66 GCACACAGGGGGGACCAAGCCGATCCCCGGCTTACGCATTCGGCCTCTCCGACCGGCTGAGCGCC
13685615 CGCACGCCCGTTTCATGTGTTGGCTTAG
131 CGCACGCCCGTTTCATGTGTTGGCTTAG
* * ***
13685643 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCCAACCGGACCGAGGGTTGTGGCAGCAAGACCGAC
** * * * ** **
13685707 AGCACGTAGAGGGGGACCAGGTCGATCCTCGGCTTGTGCATTCGGCCTCTCCGGTCGGCTGAGCG
65 AGCACACAG-GGGGGACCAAGCCGATCCCCGGCTTACGCATTCGGCCTCTCCGACCGGCTGAGCG
* * ** * **
13685772 CCCGTACGCTCGTTTTGTGGGTTAACTTAG
129 CCCGCACGCCCGTTTCATGTGTTGGCTTAG
*
13685802 GCATACAGAGTTCAT
1 GCATACGGAGTTCAT
13685817 CCCTAATCTA
Statistics
Matches: 140, Mismatches: 32, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
157 3 0.02
158 56 0.40
159 81 0.58
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGGACCGAGGGTTGTGGCAGCAAGACCGACA
GCACACAGGGGGGACCAAGCCGATCCCCGGCTTACGCATTCGGCCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCATGTGTTGGCTTAG
Found at i:13687071 original size:26 final size:26
Alignment explanation
Indices: 13687034--13687086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13687024 GTTGACTTAG
* *
13687034 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
13687060 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13687086 G
1 G
13687087 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13688450 original size:26 final size:26
Alignment explanation
Indices: 13688412--13688461 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13688402 TAGGTTGGCT
*
13688412 TAGGCATATGGAGTTCATTCCATGTC
1 TAGGCATACGGAGTTCATTCCATGTC
13688438 TAGGCATACGGAGTTCATTCCATG
1 TAGGCATACGGAGTTCATTCCATG
13688462 GTGATCGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCATGTC
Found at i:13688736 original size:26 final size:26
Alignment explanation
Indices: 13688698--13688747 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13688688 TAGGTTGGCT
*
13688698 TAGGCATATGGAGTTCATTCCATGTC
1 TAGGCATACGGAGTTCATTCCATGTC
13688724 TAGGCATACGGAGTTCATTCCATG
1 TAGGCATACGGAGTTCATTCCATG
13688748 GTGATCGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCATGTC
Found at i:13688775 original size:286 final size:287
Alignment explanation
Indices: 13688174--13689031 Score: 1700
Period size: 286 Copynumber: 3.0 Consensus size: 287
13688164 GCATGCTGAG
13688174 GGTGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCACCTGCACGCTC
1 GGTGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCACCTGCACGCTC
13688239 GTTTCGTGGGTTAACTTAGGCCACGGAGTTTATTCCTAGTCTAAGATCGGACCAGACCAAGGGTT
66 GTTTCGTGGGTTAACTTAGGCCACGGAGTTTATTCCTAGTCTAAGATCGGACCAGACCAAGGGTT
13688304 GCGATAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGGTCCTCGGCTTACGCACTCTGCCTC
131 GCGATAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGGTCCTCGGCTTACGCACTCTGCCTC
13688369 TCCGGCCAGTTGAGCACTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCA
196 TCCGGCCAGTTGAGCACTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCA
13688434 TGTCTAGGCATACGGAGTTCATTCCAT
261 TGTCTAGGCATACGGAGTTCATTCCAT
13688461 GGTGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCACCTGCACGCTC
1 GGTGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCACCTGCACGCTC
13688526 GTTTCGTGGGTTAACTTAGGCCACGGAGTTTATTCCTAGTCTAAGATCGGACCAGACCAAGGGTT
66 GTTTCGTGGGTTAACTTAGGCCACGGAGTTTATTCCTAGTCTAAGATCGGACCAGACCAAGGGTT
13688591 GCGATAGCAGGATCGACAGCACGTA-GGGGGATCAGGCCGGTCCTCGGCTTACGCACTCTGCCTC
131 GCGATAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGGTCCTCGGCTTACGCACTCTGCCTC
13688655 TCCGGCCAGTTGAGCACTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCA
196 TCCGGCCAGTTGAGCACTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCA
13688720 TGTCTAGGCATACGGAGTTCATTCCAT
261 TGTCTAGGCATACGGAGTTCATTCCAT
13688747 GGTGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCACCTGCACGCTC
1 GGTGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCACCTGCACGCTC
13688812 GTTTCGTGGGTTAACTTAGGCCACGGAGTTTATTCCTAGTCTAAGATCGGACCAGACCAAGGGTT
66 GTTTCGTGGGTTAACTTAGGCCACGGAGTTTATTCCTAGTCTAAGATCGGACCAGACCAAGGGTT
13688877 GCGATAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGGTCCTCGGCTTACGCACTCTGCCTC
131 GCGATAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGGTCCTCGGCTTACGCACTCTGCCTC
*
13688942 TCCGACCAGTTGAGCACTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCA
196 TCCGGCCAGTTGAGCACTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCA
13689007 TGTCTAGGCATACGGAGTTCATTCC
261 TGTCTAGGCATACGGAGTTCATTCC
13689032 CAGCCTAAGA
Statistics
Matches: 569, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
286 286 0.50
287 283 0.50
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.25
Consensus pattern (287 bp):
GGTGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGCACCTGCACGCTC
GTTTCGTGGGTTAACTTAGGCCACGGAGTTTATTCCTAGTCTAAGATCGGACCAGACCAAGGGTT
GCGATAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGGTCCTCGGCTTACGCACTCTGCCTC
TCCGGCCAGTTGAGCACTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCA
TGTCTAGGCATACGGAGTTCATTCCAT
Found at i:13690607 original size:26 final size:26
Alignment explanation
Indices: 13690557--13690609 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13690547 GTTGCCTTAG
*
13690557 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13690583 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13690609 G
1 G
13690610 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13691617 original size:26 final size:26
Alignment explanation
Indices: 13691579--13691631 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13691569 GTTTACTTAG
* *
13691579 GCATACGGTGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
13691605 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13691631 G
1 G
13691632 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13692108 original size:26 final size:26
Alignment explanation
Indices: 13692078--13692130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13692068 GTTGGCTTAG
13692078 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
13692104 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13692130 G
1 G
13692131 ATTGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13693212 original size:26 final size:26
Alignment explanation
Indices: 13693181--13693233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13693171 GTTGACTTAG
*
13693181 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13693207 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13693233 G
1 G
13693234 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13693538 original size:159 final size:160
Alignment explanation
Indices: 13693347--13693710 Score: 382
Period size: 158 Copynumber: 2.3 Consensus size: 160
13693337 CGTATGCCTG
* * *
13693347 ATTT-ATGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCCAG-CAGAACTAATG
1 ATTTCATGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCACCAGACAGAACCAAGG
* * * * *
13693409 GTTGTGGTAGCAAGA-CTGACAACAC-TCAGAGGGGGATCGAGCCGATCCTCGGCTTGCGCATTA
65 GTTGCGGCAGCAAGATC-GACAACACGT-AGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTA
* *
13693472 TGCCTCTTCGGTCAGCTCAGCCCCCAAACGCTC
128 TGCCTCTTCGGCCAGCTCAGCACCCAAACGCTC
* *** * * *
13693505 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATTGGACCGGACCGAGGG
1 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGAACCAAGGG
* * * * * *
13693568 TTGCGGCAGCAAGATCGATAGCACGTAGGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTCTGC
66 TTGCGGCAGCAAGATCGACAACACGTAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGC
* * * *
13693633 CTCTTCGGCCAGTTGAGCACCCACACGTTC
131 CTCTTCGGCCAGCTCAGCACCCAAACGCTC
* * *
13693663 GTTTCGTGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGCA
1 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13693711 TACAGAGTTC
Statistics
Matches: 168, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 126 0.75
159 39 0.23
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (160 bp):
ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGAACCAAGGG
TTGCGGCAGCAAGATCGACAACACGTAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGC
CTCTTCGGCCAGCTCAGCACCCAAACGCTC
Found at i:13693869 original size:195 final size:195
Alignment explanation
Indices: 13693588--13693970 Score: 504
Period size: 195 Copynumber: 2.0 Consensus size: 195
13693578 AAGATCGATA
* * *
13693588 GCACGTAGGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTTCGGCCAGTTGAGCAC
1 GCACGTA-GGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCAGCCAGCTGAGCAC
* * * *
13693653 CCACACGTTCGTTTCGTGGGTTGGCTTAGGCGTACGGAGTTCAT-TCCATGTCTAAGCATACAGA
65 CCACACG-TCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATACCCA-GTCTAAGCATACAGA
* *
13693717 GTTCATTCCCAGTCAAAGATTGGACCAGACCGAGGCTTACGGCAGCAGGACCGACAGCAGGATCG
128 GTTCATTCCCAGTCAAAGATTGAACCAGACCGAGGCTTACGACAGCAGGACCGACAGCAGGATCG
13693782 TCT
193 TCT
* * *
13693785 GCACGTA-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTTTGCCTC-TCAAGCCGGCTGAGCGC
1 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTC-AGCCAGCTGAGCAC
* *
13693848 CCGTACAC-TCGTTTCGTGGGTTGACTTAGACATATGGAGTTCATACCCAGTCTAAGCATACGGA
65 CC--ACACGTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATACCCAGTCTAAGCATACAGA
* * * * * *
13693912 GTTCATTCCCAGTCTAGGATTGAACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCA
128 GTTCATTCCCAGTCAAAGATTGAACCAGACCGAGGCTTACGACAGCAGGACCGACAGCA
13693971 CATAGGGGGG
Statistics
Matches: 162, Mismatches: 20, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
194 2 0.01
195 146 0.90
196 3 0.02
197 11 0.07
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (195 bp):
GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCAGCCAGCTGAGCACC
CACACGTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATACCCAGTCTAAGCATACAGAGTT
CATTCCCAGTCAAAGATTGAACCAGACCGAGGCTTACGACAGCAGGACCGACAGCAGGATCGTCT
Found at i:13693914 original size:26 final size:26
Alignment explanation
Indices: 13693878--13693927 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13693868 TTGACTTAGA
*
13693878 CATATGGAGTTCATACCCAGTCTAAG
1 CATACGGAGTTCATACCCAGTCTAAG
*
13693904 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATACCCAGTCTA
13693928 GGATTGAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATACCCAGTCTAAG
Found at i:13694205 original size:159 final size:157
Alignment explanation
Indices: 13693960--13694247 Score: 384
Period size: 159 Copynumber: 1.8 Consensus size: 157
13693950 GCGACAGCAG
** * * * *
13693960 GATCGGCAGCACATAGGGGGGACTAGGCCGATCCCTGGCTTGCTCATTTTGCCTCTTCGATCGGC
1 GATCGGCAGCACATAGGGGGGACTAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGC
*
13694025 TGAGCGCCCGCATGCCTGTTTCGTGGGTTCGCTGACACATA-GGTAGTTCATTCCATGTCTAAGC
66 TGAGCGCCCGCA-GCCTGTTTCATGGGTTCGCTGACACATACGG-AGTTCATTCCATGTCTAAGC
13694089 CCCAGCAAGGCTGAGGGTTGTGGTAGCGA
129 CCCAGCAAGGCTGAGGGTTGTGGTAGCGA
*
13694118 GATCGGCAGCACATAGAGGGGGA-TCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCG
1 GATCGGCAGCACATAG-GGGGGACT-AGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCG
* * * **
13694182 GCTTAGCGCCCGCA-CACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
64 GCTGAGCGCCCGCAGC-CT-GTTTCATGGGTTCGCTGACACATACGGAGTTCATTCCATGTCTAA
13694246 GC
127 GC
13694248 ATACGGAGTT
Statistics
Matches: 112, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
157 1 0.01
158 19 0.17
159 90 0.80
160 2 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.25
Consensus pattern (157 bp):
GATCGGCAGCACATAGGGGGGACTAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGC
TGAGCGCCCGCAGCCTGTTTCATGGGTTCGCTGACACATACGGAGTTCATTCCATGTCTAAGCCC
CAGCAAGGCTGAGGGTTGTGGTAGCGA
Found at i:13694250 original size:26 final size:26
Alignment explanation
Indices: 13694220--13694272 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13694210 GTTGGCTTAG
13694220 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13694246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13694272 G
1 G
13694273 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13694972 original size:26 final size:26
Alignment explanation
Indices: 13694942--13694994 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13694932 GTTGACTTAG
*
13694942 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
13694968 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13694994 G
1 G
13694995 ATGAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13696520 original size:158 final size:157
Alignment explanation
Indices: 13696046--13696719 Score: 494
Period size: 158 Copynumber: 4.2 Consensus size: 157
13696036 CCCAGTCTAA
* * * * ** * * ** *
13696046 GCATATGGAGTTCATTCCCAGTCTAGGATCGGATTGGACTGAGGGTTGCGGTAGTAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACCGAGGGTTACGACAGTAGGATCGACA
* * * * *
13696111 GCACGCAGGGGGGACTGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCACC
* * *
13696176 CGCACG-TCTGTTTCCTGGGTTGGCTTAG
130 CGCACGCTC-ATTTCATGGGTTGACTTAG
* * * * * ** * ** *
13696204 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACAGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTACGACAGTAGGATC-GA
* * * * * * * *
13696267 CAGCACGCAGAAGGGGACCGGGCCGATCC-CTGACTGGCACATTATGCCCCTCCGGCCGGCTCAG
63 CAGCACGCAG-GGGGGACCGGGCCGATCCTC-GGCTTGCGCATTATGCCTCTCCGGTCGACTGAG
* * * **
13696331 CATCTGCATGCTTGTTTCATGGGTTGACTTAG
126 CACCCGCACGCTCATTTCATGGGTTGACTTAG
* *
13696363 TCATACGGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGACCAGACCGGACCGAGGGTTACGACAGTAGGATCGACA
* ** * * * *
13696428 GTACGCAGGGGGGACCAAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCACC
** *
13696493 CGCACGCTCATTTTGTGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGACTTAG
* * *
13696521 GCATACGGAGTTCATTCCATGTCTAAGCCCCA-ACAGGACCGAAGGTTGTGGTAGTAGGACTGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCGGACCG-A----G-GGT--TACGAC----
* * * ** *
13696585 AGTGGGATCGACAGCACGCATAGGGGGACCCGGTTGATCCTCGGCTTGTGCATTATGCCTCTCCG
52 AGTAGGATCGACAGCACGCA-GGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCG
* *
13696650 ATCGACTGAGCACCCGCATGCTCATTTCATGGGTTGACTTAG
116 GTCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
*
13696692 GCATACGGAGTTCATCCCCAGTCTAAGA
1 GCATACGGAGTTCAT-TCCAGTCTAAGA
13696720 ATACGGAGTT
Statistics
Matches: 403, Mismatches: 87, Indels: 40
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.01
158 149 0.37
159 119 0.30
160 4 0.01
163 1 0.00
164 3 0.01
166 5 0.01
170 18 0.04
171 95 0.24
172 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGACCGGACCGAGGGTTACGACAGTAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCACCC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:13696724 original size:26 final size:26
Alignment explanation
Indices: 13696694--13696745 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13696684 TGACTTAGGC
13696694 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
**
13696720 ATACGGAGTTCATTGCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
13696746 TTGGACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:13697018 original size:157 final size:155
Alignment explanation
Indices: 13696783--13697218 Score: 432
Period size: 158 Copynumber: 2.8 Consensus size: 155
13696773 AGGATTGGCG
* * * *
13696783 GCACACAGGGGGGACCGGGCCGATCCCCGGCTTACGCGTTCTGCCTCTTGGCCGGCTAAGCGCCC
1 GCACACAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTGGTCGGCTAA-CGCCC
* * * * * *
13696848 GCACGCCCTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGGTCTAAGCCCCAG-CCGA
65 GAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCGA
* * *
13696912 ATCGAGGATTATTGCAG-GGACCGACA
129 ACCGAGGATTATGGCAGAGGACCAACA
* * * *
13696938 GCACATAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTGTGCCTCTCCGGTCGGCTCAACAC
1 GCACACAG-GGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-TGGTCGGCT-AACGC
* * * **
13697003 CCGAACGCTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGATT
63 CCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGACC
* * * *
13697067 GGACCGAGGGTTATGGTAGTAGGATCAACA
127 GAACCGAGGATTATGGCAG-AGGACCAACA
* * * *
13697097 GCACGCAGGGGGGA-TCAGGCC-AGTCCCCGGCTTGCGCATTCTGTCTCTTTGGTCGGCTGAGCG
1 GCACACAGGGGGGACT-GGGCCGA-TCCCCGGCTTGCGCATTCTGCCTC-TTGGTCGGCT-AACG
* * *
13697160 CCCGTACGCTCGTTTCGTGCGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
62 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCA
13697219 TATGGAGTTC
Statistics
Matches: 229, Mismatches: 40, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
155 7 0.03
156 39 0.17
157 73 0.32
158 95 0.41
159 15 0.07
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (155 bp):
GCACACAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTGGTCGGCTAACGCCCG
AACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGACCGAAC
CGAGGATTATGGCAGAGGACCAACA
Found at i:13697414 original size:26 final size:26
Alignment explanation
Indices: 13697385--13697437 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13697375 GTTGGCTTAG
*
13697385 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13697411 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13697437 G
1 G
13697438 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13698588 original size:157 final size:152
Alignment explanation
Indices: 13698119--13698618 Score: 436
Period size: 158 Copynumber: 3.2 Consensus size: 152
13698109 CCCAATCAAA
* * *
13698119 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAT
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGACC-GA-CGA-GGTTTCGGCAGTAGGATCGAC
* * *
13698183 AGCACGCAGGGGTGACCGGGCCGATCCCCAGCTTGCGCATTCTAGCTCTCCGACTGGCTGAGCGC
62 AGCACGCAGGGGGGACC-GGCCGAT-CCCAGCTTGCGCATTCT-GCTCTCCGGCCGGCTGAGCGC
*
13698248 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
124 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
13698277 GCAT-TGGGAGTTCATTCCATGTCTATGCCCCAGTCGGACCGA-G-GGTTGT-GGCAGCGGGATC
1 GCATAT-GGAGTTCATTCCATGTCTAAG----A-TCGGACCGACGAGGTT-TCGGCAGTAGGATC
* * * * * * * * *
13698338 GGCCGCACGCAGAGGGGGACCGGGCGGATCCCCGCATGCACATTATGCCTCTCCGGTCGGCTTAG
59 GACAGCACGCAG-GGGGGACC-GGCCGATCCCAGCTTGCGCATTCTG-CTCTCCGGCCGGCTGAG
* * * * *
13698403 CACCAGCACGCTCATTTTGTGGGTTGGCTTAT
121 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13698435 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGAACTGAGGTTTCGGTAGTAGGATCAACA
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGACCG-AC-GAGGTTTCGGCAGTAGGATCGACA
* * * * *
13698499 GCACACAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCGTCTCCGGCCAGCTGATCGCC
63 GCACGCAGGGGGGACC-GGCCGATCC-CAGCTTGCGCATTCTGC-TCTCCGGCCGGCTGAGCGCC
*
13698564 CGCACGCTCGTTTCATGGGTTGGCTTAG
125 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
13698592 GAATATAGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
13698619 CCCCCAGCCA
Statistics
Matches: 269, Mismatches: 53, Indels: 41
0.74 0.15 0.11
Matches are distributed among these distances:
153 8 0.03
154 2 0.01
156 21 0.08
157 96 0.36
158 115 0.43
159 17 0.06
160 1 0.00
162 3 0.01
163 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (152 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGGACCGACGAGGTTTCGGCAGTAGGATCGACAGCA
CGCAGGGGGGACCGGCCGATCCCAGCTTGCGCATTCTGCTCTCCGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAG
Found at i:13698691 original size:22 final size:22
Alignment explanation
Indices: 13698666--13698713 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
13698656 TAGTGGGATC
*
13698666 AGCTGCATACAGAGGGGGACCG
1 AGCTGCATACAGAGAGGGACCG
13698688 AGCTGCATACAGAGAGGGACCG
1 AGCTGCATACAGAGAGGGACCG
13698710 AGCT
1 AGCT
13698714 TATCCCCGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.38, T:0.10
Consensus pattern (22 bp):
AGCTGCATACAGAGAGGGACCG
Found at i:13699113 original size:159 final size:158
Alignment explanation
Indices: 13698817--13699314 Score: 497
Period size: 159 Copynumber: 3.1 Consensus size: 158
13698807 CTAAGCATAT
* * *** *
13698817 GAGTTCATTCC-TAGTCTAAG-ATCAGACTAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACG
1 GAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGCACCAGCAGGATCGGTAGCAAG
* * * * * *
13698880 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCAT
65 TAGGGGGGACTGGG-CGATCCCCGGCTTGAGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAC
* *
13698945 GCTCGTTTCGTGGGTTGGCTTTGGCATAGG
129 GCTCATTTCGTGGGTTGGCTTTGGCATACG
* * * * *
13698975 GAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTACCAGCGGGATCGGTAGCATGT
1 GAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCACCAGCAGGATCGGTAGCAAGT
* * * * *
13699039 AGAGGGGGACTGGGCAGATCCTCC-GCTTGTGCATTATGCCTATTCGGCCGGCTCAGCGCCCGCA
66 AG-GGGGGACTGGGC-GATCC-CCGGCTTGAGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
* *
13699103 CGCTCATTTCGTGGGTTGACTTAT-GCATATG
128 CGCTCATTTCGTGGGTTGGCTT-TGGCATACG
* * ** **
13699134 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCAGTAGCAGGATCGACAGCAAG
1 GAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCACCAGCAGGATCGGTAGCAAG
* * *
13699197 TGGGGGGGGATTGGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCA
65 T-AGGGGGGACTGGG-CGATCCCCGGCTTGAGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
* ** * * *
13699262 CACTCATTTTATGGGTTGGCCTAGGCATACA
128 CGCTCATTTCGTGGGTTGGCTTTGGCATACG
13699293 GAGTTCATTCCATGTCTAAGCA
1 GAGTTCATTCCATGTCTAAGCA
13699315 TGTGGAGTTC
Statistics
Matches: 276, Mismatches: 50, Indels: 26
0.78 0.14 0.07
Matches are distributed among these distances:
158 58 0.21
159 209 0.76
160 9 0.03
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCACCAGCAGGATCGGTAGCAAGT
AGGGGGGACTGGGCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
TCATTTCGTGGGTTGGCTTTGGCATACG
Found at i:13700055 original size:26 final size:26
Alignment explanation
Indices: 13700019--13700071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13700009 GTTGACTTAG
13700019 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13700045 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13700071 G
1 G
13700072 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13700562 original size:26 final size:26
Alignment explanation
Indices: 13700533--13700583 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13700523 TTTGCCTAGG
*
13700533 CATACGGAGCTCATTCATTGTCTAAA
1 CATACGGAGCTCATTCACTGTCTAAA
* *
13700559 CATACGGAGTTCATTCCCTGTCTAA
1 CATACGGAGCTCATTCACTGTCTAA
13700584 GATTGGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGCTCATTCACTGTCTAAA
Found at i:13701215 original size:159 final size:156
Alignment explanation
Indices: 13700790--13701389 Score: 442
Period size: 157 Copynumber: 3.8 Consensus size: 156
13700780 CAGCGGGATA
* * *
13700790 GGCAGCACGTAGAAGGGGATCGGGCTGATCCCCTGACTTGTGCATTATGCCTCTCCGGCCGGCTG
1 GGCAGCACGCAGAAGGGGATCGGG-TGATCCCC-GACTTGCGCATTATGCCTCTTCGGCCGGCTG
* * * * * *
13700855 AATGCCCACACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCTCTGTCTAAGATCG
64 -AGGGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CTGTCTAAGACCC
*
13700920 AACCAAACCGAGGGTTACAGCAATAGGATC
127 AACCAAACCGAGGGTTACAGCAATAGGACC
** * * * * *
13700950 TACAGCACGCATG--GGGGATCGGGCGATCCCTGGCTTGCGAATTCTGCCTCTTCGGCCGGCTGA
1 GGCAGCACGCA-GAAGGGGATCGGGTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTGA
* * * * * *
13701013 GGGCAGCACGCCCCATTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GGGCCGCACG-CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TGTCTAAGACCCA
** * ** * *
13701078 GTCAAACTGAGGGTTATGGCAGTGGGACC
128 ACCAAACCGAGGGTTACAGCAATAGGACC
* * * *
13701107 GGCAGCACGCAGAAGGGGACCGGGTTGATCCCCAACTTGCGCATTATGCCTCTTCGGTCGGCTCA
1 GGCAGCACGCAGAAGGGGATCGGG-TGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTGA
* * * ** *
13701172 GCGGCCGCATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGA-TCA
65 G-GGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCTGTCTAAGACCCA
* * * *
13701236 GACCAGACCAAGGGTT---GCGATAGCAAGATC
128 -ACCAAACCGAGGGTTACAGCAATAG---GACC
** * * * * * * * * *
13701266 GATAGCACGTAG-GGGGGACCAGGCTGATCCTCGACTTACGTATTCTGCCTCTTCGGTCGGCTG-
1 GGCAGCACGCAGAAGGGGATC-GGGTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTGA
* * * * *
13701329 GGCGCCTGCACGCTCGTTTCATGGGTTGGCTTTGGCATACTGAGTTCATTCCATGTCTAAG
65 GG-GCC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TGTCTAAG
13701390 CATACGGAGT
Statistics
Matches: 343, Mismatches: 81, Indels: 34
0.75 0.18 0.07
Matches are distributed among these distances:
156 14 0.04
157 106 0.31
158 100 0.29
159 105 0.31
160 17 0.05
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GGCAGCACGCAGAAGGGGATCGGGTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTGAG
GGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTGTCTAAGACCCAACC
AAACCGAGGGTTACAGCAATAGGACC
Found at i:13701379 original size:317 final size:322
Alignment explanation
Indices: 13700661--13701390 Score: 802
Period size: 316 Copynumber: 2.3 Consensus size: 322
13700651 CGGCTTCTAC
* * * * *
13700661 ATTCTGCCTCTCCGGCCTGCTGAGCACCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTTCGGCCGGCTGGGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
** *
13700726 GTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACTGGCAGCGGGATAG
66 GTTCATTCCATGTCTAAGCCCCAGTCAAACTGAGGGTTATGGCAGTA-GA--GGCAGC--G--AG
* * * * *
13700791 GCAGCACGTAGAAGGGGATCGGGCTGATCCCCTGACTTGTGCATTATGCCTCTCCGGCCGGCTGA
124 GCAGCACGCAGAAGGGGACCGGGCTGATCCCCTAACTTGCGCATTATGCCTCTCCGGCCGGCTCA
* * **
13700856 ATGCCCACACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCTCTGTCTAAGATCGA
189 ACGCCCACACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA
* * * * * *
13700921 ACCAAACCGAGGGTTACAGCAATAGGATCTACAGCACGCATGGGGGATCGGGCGATCCCTGGCTT
254 ACCAAACCAAGGGTTACAGCAATAGGATCGACAGCACGCAGGGGGGACCAGGCGATCCCTGACTT
*
13700986 GCGA
319 ACGA
* * * * *
13700990 ATTCTGCCTCTTCGGCCGGCTGAGG-G-CAGCACGCCCCATTTCTTGGGTTGGCTTAGGCATAGG
1 ATTCTGCCTCTTCGGCCGGCTG-GGCGCCTGCACG-CTCGTTTCATGGGTTGGCTTAGGCATACG
*
13701053 GAGTTCATTCCATGTCTAAGCCCCAGTCAAACTGAGGGTTATGGCAGT-G-GG-A-C-CGGCAGC
64 GAGTTCATTCCATGTCTAAGCCCCAGTCAAACTGAGGGTTATGGCAGTAGAGGCAGCGAGGCAGC
* * * * *
13701113 ACGCAGAAGGGGACCGGGTTGATCCCC-AACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGGC
129 ACGCAGAAGGGGACCGGGCTGATCCCCTAACTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCC
* * * * *
13701177 CGCATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATC-AGACCA
194 CACACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA-ACCA
* * * *
13701241 GACCAAGGGTT---GCGATAGCAAGATCGATAGCACGTAGGGGGGACCAGGCTGAT-CCTCGACT
258 AACCAAGGGTTACAGCAATAG---GATCGACAGCACGCAGGGGGGACCAGGC-GATCCCT-GACT
*
13701302 TACGT
318 TACGA
* * *
13701307 ATTCTGCCTCTTCGGTCGGCTGGGCGCCTGCACGCTCGTTTCATGGGTTGGCTTTGGCATACTGA
1 ATTCTGCCTCTTCGGCCGGCTGGGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
13701372 GTTCATTCCATGTCTAAGC
66 GTTCATTCCATGTCTAAGC
13701391 ATACGGAGTT
Statistics
Matches: 338, Mismatches: 53, Indels: 32
0.80 0.13 0.08
Matches are distributed among these distances:
313 6 0.02
315 1 0.00
316 119 0.35
317 105 0.31
318 6 0.02
322 1 0.00
323 1 0.00
324 2 0.01
327 1 0.00
328 5 0.01
329 90 0.27
330 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (322 bp):
ATTCTGCCTCTTCGGCCGGCTGGGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGTCAAACTGAGGGTTATGGCAGTAGAGGCAGCGAGGCAGCAC
GCAGAAGGGGACCGGGCTGATCCCCTAACTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCA
CACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAAAC
CAAGGGTTACAGCAATAGGATCGACAGCACGCAGGGGGGACCAGGCGATCCCTGACTTACGA
Found at i:13701393 original size:26 final size:26
Alignment explanation
Indices: 13701363--13701412 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13701353 GTTGGCTTTG
*
13701363 GCATACTGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
13701389 GCATACGGAGTTCATTGCCAGTCT
1 GCATACGGAGTTCATTGCCAGTCT
13701413 GAGATTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:13702123 original size:26 final size:26
Alignment explanation
Indices: 13702087--13702139 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13702077 GTTGACTTAG
13702087 GCATACAGAGTTC-ATCCCCAGCCTAA
1 GCATACAGAGTTCAAT-CCCAGCCTAA
*
13702113 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGCCTAA
13702139 G
1 G
13702140 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGCCTAA
Found at i:13702465 original size:26 final size:26
Alignment explanation
Indices: 13702429--13702481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13702419 GTTGACTTAG
13702429 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13702455 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13702481 G
1 G
13702482 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13704273 original size:27 final size:27
Alignment explanation
Indices: 13704243--13704298 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
13704233 CAAGGGGAAG
*
13704243 GACCGTGATC-GGAAGTCCAAGGATGGA
1 GACCGTGATCAAG-AGTCCAAGGATGGA
13704270 GACCGTGATCAAGAGTCCAAGGATGGA
1 GACCGTGATCAAGAGTCCAAGGATGGA
13704297 GA
1 GA
13704299 TCGAGACCGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.32, C:0.18, G:0.36, T:0.14
Consensus pattern (27 bp):
GACCGTGATCAAGAGTCCAAGGATGGA
Found at i:13709008 original size:159 final size:159
Alignment explanation
Indices: 13708734--13709235 Score: 478
Period size: 159 Copynumber: 3.2 Consensus size: 159
13708724 CAAGATCAGA
* * * * * *
13708734 TCGGACCGAGGGTTGCGGCAGCAGGATCG-CAGCACGCA-GGG-GGATCGGGCCAATCCCCAGCT
1 TCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCATGGGAGGACCGGGCCAATCCTCGGCT
* * * * * * *
13708796 TGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCAT
66 TGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCAT
* *
13708861 AGGGAATTCATTCCATGTCTAAGCCCCAG
131 ACGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * * *
13708890 TCGGATCGAGGGTTGTGGCAGCGGGACCGATAGTACGGA-GAGGAGGACCAGGTCGATTCC-CGG
1 TCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCATG-GGAGGACC-GGGCCAATCCTCGG
* * * ** * * *
13708953 CTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCCCGTACACTTGTTTCATGGGTTGACTTATGC
64 CTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGC
* **
13709018 ATACGGAGTTCATTCCCA-GTCCAAG-ATCAG
129 ATACGGAGTTCATT-CCATGTCTAAGCCCCAG
* * * * * * * *
13709048 ACCAGACCGAGGGTTATGGTAGCAGGATCGATAGCACGCATGGGGGGATCGGGCCAATCCTCGGT
1 -TCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCATGGGAGGACCGGGCCAATCCTCGGC
* * * *
13709113 TTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
65 TTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCA
*
13709178 TACGGAGTTCATTCCATGTCTAAGCCCCGG
130 TACGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
13709208 TTGAACCGAGGGTTGTGGCAGTAGGACC
1 TCGGACCGAGGGTTGTGGCAGCAGGACC
13709236 AACAGCAGGT
Statistics
Matches: 267, Mismatches: 69, Indels: 17
0.76 0.20 0.05
Matches are distributed among these distances:
156 25 0.09
157 7 0.03
158 15 0.06
159 207 0.78
160 13 0.05
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
TCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCATGGGAGGACCGGGCCAATCCTCGGCT
TGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:13709375 original size:26 final size:26
Alignment explanation
Indices: 13709346--13709398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13709336 GTTGACATAG
13709346 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* *
13709372 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
13709398 G
1 G
13709399 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:13710741 original size:158 final size:156
Alignment explanation
Indices: 13710268--13710768 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 156
13710258 CCAGTCTAAA
* *
13710268 CATATGGAGTTCATTCC-TAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGTAGGATC-AGC
1 CATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGA-C
* * * * * * * *
13710331 AACACGTAGGAGGGACCAAATCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAACGC
64 AACACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCT-TTCGGCCGGCTG-ACTC
* *
13710396 CCGCACGC-CTGTTTTATGGGTTGGCTTAGG
127 CCGCACGCTC-ATTTTGTGGGTTGGCTTAGG
* ** ** *
13710426 CATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC-ATACCGAGGGTTATGGCAGTAGGACCGAC
1 CATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGA-ACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * * * * * * * *
13710489 AGCGCGCAGAGGGGGATCGGGTCGATCCCTGGCTCGTGCATTATGCCTCTTCGACCGGCTCAATG
64 AACACGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCT-TTCGGCCGGCTGACT-
* *
13710554 CCCGAACGCTCATTTTGTGGGTTGACTTAGG
126 CCCGCACGCTCATTTTGTGGGTTGGCTTAGG
* * ** *
13710585 CATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGTGTTGCGATAGCAGGATCGACA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGACA
* * *
13710649 ATACGCAGGGGGGACCGAGTCGATCCCCAGCTTGGGCATTCTGCCTTTCTGGCCGGCTGAGCTCC
65 ACACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTTTC-GGCCGGCTGA-CTCC
*
13710714 CGCACGCTCATTTCGTGGGTTGGCTTAGG
128 CGCACGCTCATTTTGTGGGTTGGCTTAGG
*
13710743 CATACGGAGATCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
13710769 CCCCAGCCGG
Statistics
Matches: 272, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
157 7 0.03
158 145 0.53
159 116 0.43
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGACAA
CACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTTTCGGCCGGCTGACTCCCGC
ACGCTCATTTTGTGGGTTGGCTTAGG
Found at i:13710948 original size:26 final size:26
Alignment explanation
Indices: 13710912--13710964 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13710902 GTTGACTTAG
* *
13710912 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
13710938 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13710964 G
1 G
13710965 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13711442 original size:26 final size:26
Alignment explanation
Indices: 13711413--13711465 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13711403 GTTAGCTTAG
13711413 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13711439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13711465 G
1 G
13711466 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13711658 original size:26 final size:26
Alignment explanation
Indices: 13711622--13711674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13711612 GTTGACTTAG
*
13711622 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13711648 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13711674 G
1 G
13711675 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13712153 original size:26 final size:26
Alignment explanation
Indices: 13712123--13712175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13712113 GTTGCCTTAG
*
13712123 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
* *
13712149 GCATACAAAGTTTATTCCCTGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
13712175 G
1 G
13712176 ATAAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGTCTAA
Found at i:13712346 original size:26 final size:26
Alignment explanation
Indices: 13712317--13712369 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13712307 GTTGACTTAC
*
13712317 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13712343 GCATATGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13712369 G
1 G
13712370 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13712695 original size:26 final size:26
Alignment explanation
Indices: 13712659--13712711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13712649 GTTGGCTTAG
13712659 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13712685 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13712711 G
1 G
13712712 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13713054 original size:26 final size:26
Alignment explanation
Indices: 13713024--13713077 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13713014 TGGGTTGACT
*
13713024 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATAAGGAGTTCATCCCCAGTC
*
13713050 TAGGCATAAGGAGTTCATTCCCAGTC
1 TAGGCATAAGGAGTTCATCCCCAGTC
13713076 TA
1 TA
13713078 AGATCGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATAAGGAGTTCATCCCCAGTC
Found at i:13713641 original size:317 final size:317
Alignment explanation
Indices: 13713050--13713712 Score: 688
Period size: 317 Copynumber: 2.1 Consensus size: 317
13713040 ATCCCCAGTC
* * * *
13713050 TAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTAGTAGTAGGATCG
1 TAGGCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGACTGAGGGTTGTAGCAGTAGGATCG
** * * *
13713115 GTAGCACGTAGGGGGGACCAGGCCAATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCAACTAAGC
66 ACAGCACGAAGGGGGGACCAGGCCAATCCCAGGCTTACGCATTCTGCCTCTCCGGCCAACTAAGC
*
13713180 GCCCGCACACCTGTTTCATGGGTTTGCTTAGGCATAAGTAGTTCATTCCATGTCTAAGCCCCAAC
131 GCCCGCACACCTGTTTCATGGGTTTGCTTAGGCATAAGTAGTTCATTCCATGTCTAAGACCCAAC
* * * *
13713245 CGGACTGAGGGTTGTGGTAGCAAGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCTGCTT
196 CGGACTGAGGGTTGTGGTAACAAGACCGACAGCACGCAGAGGGGGACCGGGCAGATCCCCGGCTT
* * **** *
13713310 GTGCATTATGCCTCTTCGGTTGGCTCAACACCCACACGCTCGTTTCGTGGGTTGACT
261 ATGCATTATGCCTCTCCAACCGGCTCAACACCCACACACTCGTTTCGTGGGTTGACT
*
13713367 TAGGCATACGGAGTTCATTCTCAGTCTAATATCGAACCGGACTGAGGG-T-TACGACAGTAGGAT
1 TAGGCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGACTGAGGGTTGTA-G-CAGTAGGAT
* * * * * *
13713430 CGACAGTACGGAAGGGGGGA-CTGGCTCAGTCCCCA-GCTTACG-ATTTTTGCCTCTCTGGCCAG
64 CGACAGCAC-GAAGGGGGGACCAGGC-CAAT-CCCAGGCTTACGCA-TTCTGCCTCTCCGGCCAA
* * *
13713492 C-AGATCGCCCGCAC-GCTCGTTTCGTGGG-TTGACTTAGGCATACAG-AGTTCATTCCCA-GTC
125 CTA-AGCGCCCGCACACCT-GTTTCATGGGTTTG-CTTAGGCATA-AGTAGTTCATT-CCATGTC
* ** * * * *
13713552 TAAGATCGGACCGGACTGAGGGTT-TCGGTAACAGGATCGACAGTACGCA-TGGGGGACCGGGCT
185 TAAGACCCAACCGGACTGAGGGTTGT-GGTAACAAGACCGACAGCACGCAGAGGGGGACCGGGC-
* * * ** **
13713615 AG-TCCCCGGCTTATGCATTCTGCCTCTCCAACCGGCTGAGCGGCCGTACACTCGTTTCGTGGGT
248 AGATCCCCGGCTTATGCATTATGCCTCTCCAACCGGCTCAACACCCACACACTCGTTTCGTGGGT
*
13713679 TGGCT
313 TGACT
13713684 TAGGCATACGGAGTTCATTCT-ATGTCTAA
1 TAGGCATACGGAGTTCATTCTCA-GTCTAA
13713713 CCATACGGAG
Statistics
Matches: 286, Mismatches: 46, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
315 2 0.01
316 3 0.01
317 160 0.56
318 112 0.39
319 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (317 bp):
TAGGCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGACTGAGGGTTGTAGCAGTAGGATCG
ACAGCACGAAGGGGGGACCAGGCCAATCCCAGGCTTACGCATTCTGCCTCTCCGGCCAACTAAGC
GCCCGCACACCTGTTTCATGGGTTTGCTTAGGCATAAGTAGTTCATTCCATGTCTAAGACCCAAC
CGGACTGAGGGTTGTGGTAACAAGACCGACAGCACGCAGAGGGGGACCGGGCAGATCCCCGGCTT
ATGCATTATGCCTCTCCAACCGGCTCAACACCCACACACTCGTTTCGTGGGTTGACT
Found at i:13713698 original size:158 final size:158
Alignment explanation
Indices: 13713050--13713703 Score: 584
Period size: 159 Copynumber: 4.1 Consensus size: 158
13713040 ATCCCCAGTC
* * * *
13713050 TAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTAGTAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGTAGCAGGATCG
** * * * * * * * * *
13713115 GTAGCACGTAGGGGGGACCAGGCCAATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCAACTAAGC
66 ACAGCACGCAGGGGGGACCGGGCTAGTCCCCGGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGC
*
13713180 GCCCGCACAC-CTGTTTCATGGGTTTG-CT
131 GCCCGCACACTC-GTTTCGTGGG-TTGACT
* * ** * * *
13713208 TAGGCATAAGTAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGCAAGACC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGTTGTGGTAGCAGGATC
* * * ** * * *** *
13713272 GGCAGCACGCAGAGGGGGACCGGGC-CGATCCCCTGCTTGTGCATTATGCCTCTTCGGTTGGCTC
65 GACAGCACGCAG-GGGGGACCGGGCTAG-TCCCCGGCTTACGCATTCTGCCTCTCCGGCCAGCTG
* * * *
13713336 AACACCCACACGCTCGTTTCGTGGGTTGACT
128 AGCGCCCGCACACTCGTTTCGTGGGTTGACT
* * ** ** *
13713367 TAGGCATACGGAGTTCATTCTCAGTCTAATATCGAACCGGACTGAGGGTTACGACAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGTAGCAGGATCG
* * * * * * *
13713432 ACAGTACGGAAGGGGGGA-CTGGCTCAGTCCCCAGCTTACG-ATTTTTGCCTCTCTGGCCAGCAG
66 ACAGCAC-GCAGGGGGGACCGGGCT-AGTCCCCGGCTTACGCA-TTCTGCCTCTCCGGCCAGCTG
* *
13713495 ATCGCCCGCACGCTCGTTTCGTGGGTTGACT
128 AGCGCCCGCACACTCGTTTCGTGGGTTGACT
* * *
13713526 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT-TCGGTAACAGGATC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGT-GGTAGCAGGATC
* * * ** *
13713590 GACAGTACGCATGGGGGACCGGGCTAGTCCCCGGCTTATGCATTCTGCCTCTCCAACCGGCTGAG
65 GACAGCACGCAGGGGGGACCGGGCTAGTCCCCGGCTTACGCATTCTGCCTCTCCGGCCAGCTGAG
* * *
13713655 CGGCCGTACACTCGTTTCGTGGGTTGGCT
130 CGCCCGCACACTCGTTTCGTGGGTTGACT
13713684 TAGGCATACGGAGTTCATTC
1 TAGGCATACGGAGTTCATTC
13713704 TATGTCTAAC
Statistics
Matches: 396, Mismatches: 87, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 150 0.38
159 236 0.60
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGTAGCAGGATCG
ACAGCACGCAGGGGGGACCGGGCTAGTCCCCGGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGC
GCCCGCACACTCGTTTCGTGGGTTGACT
Found at i:13713736 original size:26 final size:26
Alignment explanation
Indices: 13713688--13713738 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13713678 TTGGCTTAGG
*
13713688 CATACGGAGTTCATTCTATGTCTAAC
1 CATACGGAGTTCATTCCATGTCTAAC
13713714 CATACGGAGTTCATTCCCA-GTCTAA
1 CATACGGAGTTCATT-CCATGTCTAA
13713739 GATCGGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAC
Found at i:13714042 original size:26 final size:26
Alignment explanation
Indices: 13714013--13714065 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13714003 GTTGACTTAG
13714013 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13714039 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13714065 G
1 G
13714066 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13714519 original size:158 final size:158
Alignment explanation
Indices: 13714039--13714540 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 158
13714029 CCCAGTCTAA
* * * * *
13714039 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGAGACAGTAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGATCGAC
* * * * * * *
13714103 AGCACGCAGGGGCGACCGAGCCGATCCCTGGCTTGCACATTCTGCCGCTTC-GATCAGTTGA-CT
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGAT-AGCTGAGC-
* *
13714166 GCCCGCACGCTCGTTTCATGCGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* ** * * *
13714197 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTT-ATGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGA-GGCAGCAGGATCGA
* * * * * * * *
13714260 CAGCACGCAGAGGGGGACCGGACCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTTGGCTCAGT
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATAGCTGAGC
* * * **
13714325 GCCCGAACGTTCATTTGGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
13714356 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGATCGAC
* * * * * * *
13714420 AGCACGTAGGGGGGATCGGGTCGGTCCCCGGTTTACGCATTCTGCCTCTCCGGCTAGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATAGCTGAGCGC
*
13714485 CCGCACGCTCGTTTCATGGGTCGACTTAG
130 CCGCACGCTCGTTTCATGGGTTGACTTAG
13714514 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13714541 CATACGGAGT
Statistics
Matches: 272, Mismatches: 62, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 7 0.03
158 144 0.53
159 116 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATAGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:13714544 original size:26 final size:26
Alignment explanation
Indices: 13714514--13714565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13714504 GTCGACTTAG
13714514 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13714540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13714566 AATCGGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13714681 original size:185 final size:185
Alignment explanation
Indices: 13714356--13714909 Score: 681
Period size: 184 Copynumber: 3.0 Consensus size: 185
13714346 GTTGACTTAG
13714356 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCGACA
* * * * * *
13714421 GCACG-TAGGGGGGATCG-GGTCGGTCCCCGGTTTACGCATTCTG-CCTCTCCGG-CTAGCTGAG
66 GCACGCAAGGGGGGACCGAGCT-GATCCCCGGCTTGCGCATTC-GACCTCTCCGGTC-AGCTGAG
*
13714482 CGCCCGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCATGTCTAA
128 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * *
13714540 GCATACGGAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTGCTGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCGACA
* * *
13714605 GCACGCAAGGGGGGACCGAGCTGATCCCCGGCTTGCACATTCGACCTCTCCGGTC-GACTGAACA
66 GCACGCAAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCGACCTCTCCGGTCAG-CTGAGCG
* * *
13714669 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCTCA-GTCTAA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAA
* ** * *
13714725 GCATATGGAGTTCATTCCCAGTCTAAGATCTAACCGGACCGAAGGTTGCGGTATCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCGACA
* * * * * * * *
13714790 GCACGCAA-AGGGGACCGAGCCGATCCCCAGCTTGTGCATTCTACCTCTTCGATCAGCTGAGTGC
66 GCACGCAAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCGACCTCTCCGGTCAGCTGAGCGC
* * * *
13714854 CCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
13714909 G
1 G
13714910 GCCCAGCCAG
Statistics
Matches: 313, Mismatches: 49, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
183 2 0.01
184 155 0.50
185 151 0.48
186 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCGACA
GCACGCAAGGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCGACCTCTCCGGTCAGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13714735 original size:26 final size:26
Alignment explanation
Indices: 13714699--13714751 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13714689 GTTGACTTAG
13714699 GCATATGGAGTTCA-TCCTCAGTCTAA
1 GCATATGGAGTTCATTCC-CAGTCTAA
13714725 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13714751 G
1 G
13714752 ATCTAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13715699 original size:26 final size:26
Alignment explanation
Indices: 13715665--13715717 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13715655 GTTGACTTAG
* *
13715665 GCATGCGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13715691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13715717 G
1 G
13715718 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13716076 original size:159 final size:159
Alignment explanation
Indices: 13715691--13716084 Score: 431
Period size: 159 Copynumber: 2.5 Consensus size: 159
13715681 CCCAGTTTAA
** * * *
13715691 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGC-AGCGGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAGGATCGGC
* * * * *
13715755 AGCACACAGA-GGGGACCGGGCCGATCCCCAGCATGCGCATTCTGCCTCTCCGGTCGGCTGAGGC
65 AGCACGCAGAGGGGGACCGGGACGATCCCCAGCATGCGCATTATGCCTCACCGGTCGGCTCAGGC
*
13715819 CCCAGACGCCCGTTTCATGGGTTGGCTTAG
130 CCCAGACGCCCGTTTCATGGGTTGACTTAG
* * * ** * * * *
13715849 GCGTAGGGAGTTCATT-CCATGTCCAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGG
* * *
13715912 CAGCACGCAGAGGGGGATCGGGATGATCCCCAGCTTGCGCATTATGCCTCACCGGTCGGCTCAGT
64 CAGCACGCAGAGGGGGACCGGGACGATCCCCAGCATGCGCATTATGCCTCACCGGTCGGCTCAG-
* * *
13715977 G-GCCATACGCTCGTTTCATGGGTTGACTTAG
128 GCCCCAGACGCCCGTTTCATGGGTTGACTTAG
* * * **
13716008 GTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGCTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCA
13716073 GCACGCAG-GGGG
66 GCACGCAGAGGGG
13716085 AGGCCCGGTT
Statistics
Matches: 189, Mismatches: 40, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 59 0.31
159 123 0.65
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.20
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGAGGGGGACCGGGACGATCCCCAGCATGCGCATTATGCCTCACCGGTCGGCTCAGGCC
CCAGACGCCCGTTTCATGGGTTGACTTAG
Found at i:13716219 original size:26 final size:26
Alignment explanation
Indices: 13716167--13716219 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13716157 GTTGGCTTAG
* *
13716167 GCATACAGAGTTCATTCCATTTTTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
13716193 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13716219 G
1 G
13716220 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13716563 original size:26 final size:26
Alignment explanation
Indices: 13716534--13716586 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13716524 GTTGACTTAG
* *
13716534 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAATCTAA
* *
13716560 GCATACGGAGTTTAGTCCCAATCTAA
1 GCATACGAAGTTCAGTCCCAATCTAA
13716586 G
1 G
13716587 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAATCTAA
Found at i:13717022 original size:157 final size:155
Alignment explanation
Indices: 13716581--13717058 Score: 434
Period size: 157 Copynumber: 3.0 Consensus size: 155
13716571 TTAGTCCCAA
* * *
13716581 TCTAAGATCGGACCGAATCGAGGGTTGCGGCAGCATGATCGATAGCACACA-GGGGGATCGGGTC
1 TCTAAGATCAGA-CGAATCGAGGGTTGTGGCAGCAGGATCGATAGCACACAGGGGGGATCGGGTC
* * * * * * * *
13716645 GATCCTCGGCTTACGCATTCTACATCTCTAGCCGGCTGAATGCCCGCACG-TCCGTTTCGTGGGT
65 GATCCTCGACTTGCGCATTCTGCCTCTCGA-TCGACT-AATGCCCACACGCT-CGTTTCGTGGGT
* *
13716709 TGGCTTAGGCATAGGGAGTTCATTCCATG
127 TGGCTTAGGCATACGGAGTTCATTCCACG
** * * * * * *
13716738 TCTAAGCCCCAG-CCAAACTGAGGGCTGTGGCAGCAGGACCGACAGCACTCAGAGGGGGA-CTGG
1 TCTAAG-ATCAGACGAATC-GAGGGTTGTGGCAGCAGGATCGATAGCACACAG-GGGGGATC-GG
* * * * * *
13716801 GTCGATCCTCGACTTGCGCTTTATGCCTCTCCGGTCGTCAC-AA-CCCCGA-ACTCTTGTTTCGT
62 GTCGATCCTCGACTTGCGCATTCTGCCTCT-CGATCG--ACTAATGCCC-ACACGCTCGTTTCGT
* *
13716863 GGGTTGACTTAGGCAAACGGAGTTCATTCC-CAG
123 GGGTTGGCTTAGGCATACGGAGTTCATTCCAC-G
* * * *
13716896 TCTAAGATCAGACGAATCGAGGGTTGTGGTAGCAGGATTGATAGCACGCAGGGGGGGATCAGGTC
1 TCTAAGATCAGACGAATCGAGGGTTGTGGCAGCAGGATCGATAGCACACA-GGGGGGATCGGGTC
*
13716961 GATCCTCGACTTGCGCATTCTGCCTCTCGATCGACTAAGTGCCCACACGCTCGTTTTGTGGGTTG
65 GATCCTCGACTTGCGCATTCTGCCTCTCGATCGACTAA-TGCCCACACGCTCGTTTCGTGGGTTG
*
13717026 GCTTAGGCCTACGGAGATT-ATTCCACG
129 GCTTAGGCATACGGAG-TTCATTCCACG
13717053 TCTAAG
1 TCTAAG
13717059 CATATGGAGT
Statistics
Matches: 251, Mismatches: 50, Indels: 40
0.74 0.15 0.12
Matches are distributed among these distances:
154 2 0.01
155 2 0.01
156 10 0.04
157 140 0.56
158 58 0.23
159 37 0.15
160 1 0.00
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (155 bp):
TCTAAGATCAGACGAATCGAGGGTTGTGGCAGCAGGATCGATAGCACACAGGGGGGATCGGGTCG
ATCCTCGACTTGCGCATTCTGCCTCTCGATCGACTAATGCCCACACGCTCGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCACG
Found at i:13718673 original size:159 final size:159
Alignment explanation
Indices: 13718350--13718801 Score: 486
Period size: 159 Copynumber: 2.9 Consensus size: 159
13718340 CGAACTGGAC
* * * *
13718350 CGAGGGTTGCGGTAGCAGGATCGGCAACACGTAGGGGGGATCGAG-TCGATCCTTGGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAACACGTAGGGGGGATCGGGCT-GATCCTTGGCTTGCGCA
* * * * ** * *
13718414 TTTTGCCTCTCCGGTCGGCTGAGCACCCGCACGGC-CGTTTCGTGGGATGGGTTAGGGATAGGGA
65 TTATGCCTCTCCAGTCGGCTAAGCACCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
13718478 GTTCATT-CCATGTCGAAGCCCCAACCAATA
129 GTTCATTCCCATGTCGAAGACCCAACCAATA
** * **
13718508 CGAGGGTTGTGGCAGC-GGGGCTGACAGCACGTAGAGGGGGATCGGGCTGATCCCCGGCTTGCGC
1 CGAGGGTTGTGGCAGCAGGATC-GACAACACGTAG-GGGGGATCGGGCTGATCCTTGGCTTGCGC
*
13718572 ATTATGCCTCTCCAGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
64 ATTATGCCTCTCCAGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* **** * *
13718637 GTTCATTCCCA-GTCTAAGATTGGATCAGA-C
129 GTTCATTCCCATGTCGAAGACCCAACCA-ATA
* * *
13718667 CGAGGGTTGTGGCAGCAGGATCGACAACATGCAGGGGGGATCGGGCTGATCCTTGGCTTGCACAT
1 CGAGGGTTGTGGCAGCAGGATCGACAACACGTAGGGGGGATCGGGCTGATCCTTGGCTTGCGCAT
* * * * * * *
13718732 TCTGCCTCTCCAGCCGGCTAAGCGCCCGCATGCT-ATTTCATGGGTTGTCTTAGGCATACGGAGT
66 TATGCCTCTCCAGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
13718796 TCATTC
131 TCATTC
13718802 GTTGTCTAAG
Statistics
Matches: 246, Mismatches: 41, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 36 0.15
158 83 0.34
159 119 0.48
160 8 0.03
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGGATCGACAACACGTAGGGGGGATCGGGCTGATCCTTGGCTTGCGCAT
TATGCCTCTCCAGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCATGTCGAAGACCCAACCAATA
Found at i:13718798 original size:27 final size:26
Alignment explanation
Indices: 13718768--13718823 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
13718758 CGCATGCTAT
* *
13718768 TTCATGGGTTGTCTTAGGCATACGGAG
1 TTCATGCGTTGTC-TAAGCATACGGAG
*
13718795 TTCATTCGTTGTCTAAGCATACGGAG
1 TTCATGCGTTGTCTAAGCATACGGAG
13718821 TTC
1 TTC
13718824 TTTCTCAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.36
Consensus pattern (26 bp):
TTCATGCGTTGTCTAAGCATACGGAG
Found at i:13720024 original size:26 final size:26
Alignment explanation
Indices: 13719994--13720046 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13719984 GTTGGCTTTG
* *
13719994 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
*
13720020 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
13720046 G
1 G
13720047 ATCGGTCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAGGTCTAA
Found at i:13720385 original size:26 final size:26
Alignment explanation
Indices: 13720349--13720401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13720339 GTTGACTTAG
13720349 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13720375 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13720401 G
1 G
13720402 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13720604 original size:343 final size:344
Alignment explanation
Indices: 13719775--13721391 Score: 1574
Period size: 343 Copynumber: 4.7 Consensus size: 344
13719765 ATTCTTGGCT
* * * * * * * *
13719775 TGCGCATTATGCCT-TTTCGGCTGGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTATGCA
1 TGCGCATTCTGCCTCTCT-GGCTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
* ** * * **
13719839 TACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACTGAGGGTTGTGGCAGTAGGATCGACAGC
65 TAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGATCGACAGC
* * * * * * * *
13719903 ATGCAG-GGGGGATCG-GACCGATCACCAGCTTAGGGATTCTGCCTCTCCGGCCGGCTGAGCACC
129 ACGTAGTGGGGGATCGAG-CTGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGGCTGAGCACC
* * * * *
13719966 CGCACACTCATTTCATGGGTTGGCTTTGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAG
193 CACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAG
* * * *
13720030 TTCATTCCCGGTCTAAGATCGGTCCGGATCGAGGGTTGCGACAGCAGGACAGGCAGCAGGATCGG
257 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT------GC----CA-GCAGCAGGATCGA
* * *** *
13720095 CAGCACGTAGGGGGGATCGGGCCAATCCTTAGCT
311 CAGCACGTAGGGGGGATCGGGTCGATCCCCGGCA
* * * * * *
13720129 TGTGCATTCTTCCTCT-TCGGCTGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCA
1 TGCGCATTCTGCCTCTCT-GGCTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
* ** *
13720193 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACTGAGGGTTG-GTGCAACGGGATCGACAGC
65 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTG-GCAGCGGGATCGACAGC
* * **
13720257 ACGTAGTGGGGGATCGAGCTGATCCCCAGCTTTCGCATTATGCCTCTCCGATCGGCTGAGTGCCC
129 ACGTAGTGGGGGATCGAGCTGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGGCTGAGCACCC
* * *
13720322 ACACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
194 ACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * * *
13720387 CATTCCTAGTCTAAGATCAGACCGGACCAAAGGTTGCCA-CAGCAGGATCGGCAGCACGCAGGGG
259 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCAGCAGCAGGATCGACAGCACGTAGGGG
* *
13720451 GGATCAGGTCGATCCCTGGCA
324 GGATCGGGTCGATCCCCGGCA
* *
13720472 TACGCATTCTGCCTCTCTGG-TCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCA
1 TGCGCATTCTGCCTCTCTGGCT-GGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
*
13720536 TAGGTAGTTCATTCCATGTCTAAGCCCCAGTCGGA-TCGAGGGTTGTGGCAGCGGGATCGACAGC
65 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACT-GAGGGTTGTGGCAGCGGGATCGACAGC
*
13720600 ACGTAGCGGGGGATCGAGCTGATCCCC-GACTTACGCATTATGCCTCTCCGGTCGGCTGAGCACC
129 ACGTAGTGGGGGATCGAGCTGATCCCCAG-CTTACGCATTATGCCTCTCCGGTCGGCTGAGCACC
* * * * *
13720664 CCCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGT
193 CACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * * *
13720729 TCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCTA-CAGCAGGATCGATAGCATGTAGGG
258 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCAGCAGCAGGATCGACAGCACGTAGGG
13720793 GGGATCGGGTCGATCCCCGGCA
323 GGGATCGGGTCGATCCCCGGCA
** * ** * * *
13720815 TGCATATTTTGCCTCTCCAGCTGGCTGAGCACCCGCATGCCCGTTTCATCGGTTGGCTTAGGCAT
1 TGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
* * * * **
13720880 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGGCAGTGGGATCGGTAGCA
66 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGT-GGCAGCGGGATCGACAGCA
* * * * * ** *
13720945 CGTAGTGGGGGACCGGGCTAATCCTCAGCTTACGCATTATGCCTTTCTTG-CTGGCTGAGCTCCC
130 CGTAGTGGGGGATCGAGCTGATCCCCAGCTTACGCATTATGCCTCTCCGGTC-GGCTGAGCACCC
** *
13721009 ACACACTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTT
194 ACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * * *
13721074 CATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTG-CAGTAGCAGGATTGACA-AACGTTAGGG
259 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCAGCAGCAGGATCGACAGCACG-TAGGG
*
13721137 GGGA-CTGGGTCGATCCCCGGCT
323 GGGATC-GGGTCGATCCCCGGCA
* * * *
13721159 TGCGCATTCTGCCTCTCT-GATCGGCTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCA
1 TGCGCATTCTGCCTCTCTGGCT-GGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
*
13721223 TAGGGAG----TT-CAT-T-T--------GTCGGACTGAGGGTTGTGGCAGCGGGATTTGACAGC
65 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGA-TCGACAGC
* ** * * *** * * *
13721273 ACGCAAAGGGGGATCGGGCCGATCCTTGGCTTACGCATTATGCCTCTTCGGCCGGCTCA--ACGC
129 ACGTAGTGGGGGATCGAGCTGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGGCTGAGCAC-C
* * * * *
13721336 CAGTACGCTCATTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAG
193 CA-CACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
13721392 ATCGAACCGG
Statistics
Matches: 1066, Mismatches: 173, Indels: 73
0.81 0.13 0.06
Matches are distributed among these distances:
327 1 0.00
328 12 0.01
329 108 0.10
330 1 0.00
337 1 0.00
338 1 0.00
339 3 0.00
340 2 0.00
342 3 0.00
343 435 0.41
344 254 0.24
345 3 0.00
349 2 0.00
353 4 0.00
354 104 0.10
355 128 0.12
356 4 0.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (344 bp):
TGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGATCGACAGCAC
GTAGTGGGGGATCGAGCTGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGGCTGAGCACCCAC
ACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCAGCAGCAGGATCGACAGCACGTAGGGGGG
ATCGGGTCGATCCCCGGCA
Found at i:13720670 original size:159 final size:158
Alignment explanation
Indices: 13720426--13720719 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 158
13720416 AAGGTTGCCA
* * * * * *
13720426 CAGCAGGATCGGCAGCACGCAGGGGGGATCAGGTCGATCCCTGGCATACGCATTCTGCCTCTCTG
1 CAGCAGGATCGACAGCACGCAGGGGGGATCAGCTCGATCCCCGACATACGCATTATGCCTCTCCG
* * *
13720491 GTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTT-AGCTTAGGCATA-GGTAGTTCATTCCAT-
66 GTCGGCTGAGCACCCCCACGCCCGTTCCATGGGTTGA-CTTAGGCATACGG-AGTTCA-TCCATA
13720553 GTCTAAGCCCCAGTCGGATCGAGGGTTGTGG
128 GTCTAAGCCCCAGTCGGATCGAGGGTTGTGG
* * *
13720584 CAGCGGGATCGACAGCACGTAGCGGGGGATCGAGCT-GATCCCCGACTTACGCATTATGCCTCTC
1 CAGCAGGATCGACAGCACGCAG-GGGGGATC-AGCTCGATCCCCGACATACGCATTATGCCTCTC
* *
13720648 CGGTCGGCTGAGCACCCCCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAG
64 CGGTCGGCTGAGCACCCCCACGCCCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCATAG
13720713 TCTAAGC
129 TCTAAGC
13720720 ATACGGAGTT
Statistics
Matches: 117, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
158 23 0.20
159 88 0.75
160 6 0.05
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (158 bp):
CAGCAGGATCGACAGCACGCAGGGGGGATCAGCTCGATCCCCGACATACGCATTATGCCTCTCCG
GTCGGCTGAGCACCCCCACGCCCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCATAGTC
TAAGCCCCAGTCGGATCGAGGGTTGTGG
Found at i:13720721 original size:26 final size:26
Alignment explanation
Indices: 13720692--13720744 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13720682 GTTGACTTAG
13720692 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13720718 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13720744 G
1 G
13720745 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13721066 original size:26 final size:26
Alignment explanation
Indices: 13721036--13721088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13721026 GTTGACTTAG
13721036 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13721062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13721088 G
1 G
13721089 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13721139 original size:687 final size:689
Alignment explanation
Indices: 13719805--13721391 Score: 1696
Period size: 687 Copynumber: 2.3 Consensus size: 689
13719795 CTGGCTCAGT
* * * * *
13719805 GCCCGCACACTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAAT
1 GCCCGCACGCCCGTTTCATGGGTTG-CTTAGGCATA-GGAGTTCATTCCCAGTCTAAGACCCAAT
* *
13719870 CGGACTGAGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGGGGATCGGACCGATCACCAGCTTA
64 CGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGACCGATCACCAGCTTA
* * * * * * *
13719935 GGGATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACACTCATTTCATGGGTTGGCTTTGGCATAC
129 CGCATTATGCCTCTCCGGCCGGCTGAGCACCCCCACACTCATTCCATGGGTTGACTTAGGCATAC
* * ** * *
13720000 GGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCGGTCTAAGATCGGTCCGGATCGAGGG
194 GGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGG
**
13720065 TTGCGACAGCAGGACAGGCAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCAATCCTTAGCTT
259 TTGC-ACAGCAGGACAGGCAGCA-GAT---CAGCACGTAGGGGGGATCGGGCCAATCCCCAGC-T
* * * ** * * *
13720130 GTGCATTCTTCCTCTTCGGCTGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATA
318 ATGCATTCTTCCTCTCCAGCTGGCTGAGCACCCACACGCCCGTTTCATCGGTTGGCTTAGGCATA
* *
13720195 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACTGAGGGTTGGTGCAACGGGATCGACAGCACG
383 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGGGGCAACGGGATCGACAGCACG
* * *
13720260 TAGTGGGGGATCGAGCTGATCCCCAGCTTTCGCATTATGCCTCTCCGATCGGCTGAGTGCCCACA
448 TAGTGGGGGACCGAGCTAATCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCACA
* * * *
13720325 CGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
513 CACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
* * *
13720390 TCCTAGTCTAAGATCAGACCGGACCAAAGGTTGCCACAGCAGGATCGGCAGCACGCAGGGGGGA-
578 TCCCAGTCTAAGATCAGACCGGACCAAAGGTTGCCACAGCAGGATCGACAGAACGCAGGGGGGAC
* *
13720454 TCAGGTCGATCCCTGGCATACGCATTCTGCCTCTCTGGTCGGCTGAGC
643 T-AGGTCGATCCCCGGCATACGCATTCTGCCTCTCTGATCGGCTGAGC
* *
13720502 GCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGTAGTTCATT-CCATGTCTAAGCCCCAG
1 GCCCGCACGCCCGTTTCATGGGTT-GCTTAGGCATAGG-AGTTCATTCCCA-GTCTAAGACCCAA
* * * *
13720566 TCGGA-TCGAGGGTTGTGGCAGCGGGATCGACAGCACGTAGCGGGGGATC-GAGCTGATC-CCCG
63 TCGGACT-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGA-CCGATCACCAG
* * *
13720628 ACTTACGCATTATGCCTCTCCGGTCGGCTGAGCACCCCCACGCTCGTTCCATGGGTTGACTTAGG
125 -CTTACGCATTATGCCTCTCCGGCCGGCTGAGCACCCCCACACTCATTCCATGGGTTGACTTAGG
*
13720693 CATACGGAGTTCATCCC-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
189 CATACGGAGTTCATCCCAT-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
* * * * * *
13720757 CGAGGGTTGC-TA-CA-G-CAGG-ATC-GAT-AGCATGTAGGGGGGATCGGGTCGATCCCCGGC-
253 CGAGGGTTGCACAGCAGGACAGGCAGCAGATCAGCACGTAGGGGGGATCGGGCCAATCCCCAGCT
* * *
13720814 ATGCATATTTTGCCTCTCCAGCTGGCTGAGCACCCGCATGCCCGTTTCATCGGTTGGCTTAGGCA
318 ATGCAT-TCTT-CCTCTCCAGCTGGCTGAGCACCCACACGCCCGTTTCATCGGTTGGCTTAGGCA
* ** **
13720879 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGGCAGTGGGATCGGTAGC
381 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTG-GGGCAACGGGATCGACAGC
* * * * *
13720944 ACGTAGTGGGGGACCGGGCTAATCCTCAGCTTACGCATTATGCCTTTCTTGCT-GGCTGAGCT-C
445 ACGTAGTGGGGGACCGAGCTAATCCCCAGCTTACGCATTATGCCTCTC-CGATCGGCTGAG-TGC
**
13721007 CCACACACTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
508 CCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
** * * * * * * *
13721072 TTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTG-CAGTAGCAGGATTGACA-AACGTTAG
573 TTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGCCA-CAGCAGGATCGACAGAACG-CAG
* * *
13721135 GGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGC
636 GGGGGACTAGGTCGATCCCCGGCATACGCATTCTGCCTCTCTGATCGGCTGAGC
* * *
13721189 GCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA-T-----T-T--G------T
1 GCCCGCACGCCCGTTTCATGGGTT-GCTTAGGCATA-GGAGTTCATTCCCAGTCTAAGACCCAAT
* * * * **
13721239 CGGACTGAGGGTTGTGGCAGCGGGATTTGACAGCACGCAAAGGGGGATCGGGCCGATC-CTTGGC
64 CGGACTGAGGGTTGTGGCAGCAGGA-TCGACAGCACGC-AGGGGGGATCGGACCGATCAC-CAGC
* * * * *** * * *
13721303 TTACGCATTATGCCTCTTCGGCCGGCTCAACGCCAGTACGCTCATTTCATGGGTTGACTTATGCA
126 TTACGCATTATGCCTCTCCGGCCGGCTGAGCACCCCCACACTCATTCCATGGGTTGACTTAGGCA
*
13721368 TATGGAGTTCATTCCCA-GTCTAAG
191 TACGGAGTTCA-TCCCATGTCTAAG
13721392 ATCGAACCGG
Statistics
Matches: 756, Mismatches: 110, Indels: 72
0.81 0.12 0.08
Matches are distributed among these distances:
672 24 0.03
673 97 0.13
674 7 0.01
678 1 0.00
680 1 0.00
681 1 0.00
684 5 0.01
685 3 0.00
686 119 0.16
687 252 0.33
688 6 0.01
690 3 0.00
692 2 0.00
693 4 0.01
694 1 0.00
695 2 0.00
696 7 0.01
697 88 0.12
698 133 0.18
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (689 bp):
GCCCGCACGCCCGTTTCATGGGTTGCTTAGGCATAGGAGTTCATTCCCAGTCTAAGACCCAATCG
GACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGACCGATCACCAGCTTACG
CATTATGCCTCTCCGGCCGGCTGAGCACCCCCACACTCATTCCATGGGTTGACTTAGGCATACGG
AGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT
GCACAGCAGGACAGGCAGCAGATCAGCACGTAGGGGGGATCGGGCCAATCCCCAGCTATGCATTC
TTCCTCTCCAGCTGGCTGAGCACCCACACGCCCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTC
ATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGGGGCAACGGGATCGACAGCACGTAGTGGGG
GACCGAGCTAATCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCACACACTCATT
TCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCGGACCAAAGGTTGCCACAGCAGGATCGACAGAACGCAGGGGGGACTAGGTCGA
TCCCCGGCATACGCATTCTGCCTCTCTGATCGGCTGAGC
Found at i:13728223 original size:26 final size:26
Alignment explanation
Indices: 13728187--13728236 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13728177 GTTGACTTAG
*
13728187 GCATACGGAGTTCA-TCCCTAGTCTGA
1 GCATACAGAGTTCATTCCC-AGTCTGA
13728213 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
13728237 AAGATCTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:13728703 original size:26 final size:26
Alignment explanation
Indices: 13728666--13728718 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13728656 GTTGGCTTAG
*
13728666 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13728692 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13728718 G
1 G
13728719 ATCGTACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13728850 original size:184 final size:184
Alignment explanation
Indices: 13728508--13728877 Score: 467
Period size: 184 Copynumber: 2.0 Consensus size: 184
13728498 GTTGACTTAG
* * * *
13728508 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTACGACACCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAAGGTTACGACACCAAGATCGATA
** * * * *
13728573 GCACGTAGGGGGGATCGGGCCAGTCCCCAGCTTGCGCATTCTACCTCTCCAATCGGCTGAGTGCC
66 GCACACAGGGGGGACCGGGCCAGTCCCCAGCTTGCACATTCTACCTCTCCAATCGACTGAGTCCC
* *
13728638 CGCACGCTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** ** * *
13728692 GCATACGAAGTTCATTCCCAGTCTAAGATCGTACCAGA-TCGAAGGTTGTGGCACCAAGATCGGT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACT-GAAGGTTACGACACCAAGATCGAT
* * * * **
13728756 AGCACACAGGGGGGACCGGGCC-GATCCTCGGCTTGCACATTCTGCCTCTTCGGTCGACTGAG-C
65 AGCACACAGGGGGGACCGGGCCAG-TCCCCAGCTTGCACATTCTACCTCTCCAATCGACTGAGTC
*
13728819 CCCGGCATGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCC-GCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13728876 GC
1 GC
13728878 CGCAGCCAAA
Statistics
Matches: 158, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 5 0.03
184 153 0.97
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAAGGTTACGACACCAAGATCGATA
GCACACAGGGGGGACCGGGCCAGTCCCCAGCTTGCACATTCTACCTCTCCAATCGACTGAGTCCC
CGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13729069 original size:26 final size:26
Alignment explanation
Indices: 13729033--13729085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13729023 GTTGACTTAG
*
13729033 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13729059 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13729085 G
1 G
13729086 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13729581 original size:26 final size:26
Alignment explanation
Indices: 13729531--13729583 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13729521 GTTGCCTTCG
* *
13729531 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13729557 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13729583 G
1 G
13729584 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13729961 original size:26 final size:26
Alignment explanation
Indices: 13729923--13729992 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
13729913 GTTGGCTTAG
* *
13729923 GCATAGGGTGTTCATTCCATGTATAA
1 GCATACGGAGTTCATTCCATGTATAA
*
13729949 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
13729975 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13729993 CAATCTAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:13729999 original size:26 final size:26
Alignment explanation
Indices: 13729923--13730001 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
13729913 GTTGGCTTAG
* * * *
13729923 GCATAGGGTGTTCATTCCATGTATAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13729949 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13729975 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13730001 G
1 G
13730002 ATCGGACCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13730187 original size:25 final size:26
Alignment explanation
Indices: 13730158--13730209 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13730148 GTTAACTTAG
*
13730158 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
*
13730183 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
13730209 G
1 G
13730210 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:13730341 original size:418 final size:418
Alignment explanation
Indices: 13729531--13730366 Score: 1474
Period size: 418 Copynumber: 2.0 Consensus size: 418
13729521 GTTGCCTTCG
13729531 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGAC
** * *
13729596 TGAGGGTTGCGGCAGCTGGACCAGTAGTAGGATCGGCAGCACGCAGGGGGGACCAAGTCGATCCT
66 TGAGGGTTGCGGCAGCAAGACCAGTAGCAGGATCGACAGCACGCAGGGGGGACCAAGTCGATCCT
* *
13729661 CGACTTGCATATTCTGCCTTTCCGATCGGCCTCTTCGGTCGGTTGAGTGCCCACACGCTCGTTTC
131 CGACTTGCATATTCTGCCTCTCCGATCGACCTCTTCGGTCGGTTGAGTGCCCACACGCTCGTTTC
*
13729726 ATGGGTTAACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAAAGATCATTCCCAGTCTAA
196 ATGGGTTAACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACAAAGATCATTCCCAGTCTAA
* *
13729791 GATCGAACCAGATCGAGGGTTACGGTAGTAGGATCGACAGAACGGAGGGGGGATCAGGCCAATCC
261 GATCGAACCAGATCGAGGGTTACGGTAGCAGGATCGACAAAACGGAGGGGGGATCAGGCCAATCC
* * * * * * * *
13729856 CTGGCTTTTACATTTTGCCTCTCCGATCGGCTGAACGCTTGGACGCTCGTTTCGTGGGTTGGCTT
326 CTGGCTTTTACATTCTGCCTCTCCGACCGACTGAACGCTTGCACACCCGTTTCATGGGTTCGCTT
13729921 AGGCATAGGGTGTTCATTCCATGTATAA
391 AGGCATAGGGTGTTCATTCCATGTATAA
*
13729949 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGAC
*
13730014 TGAGGGTTGCGGCAGCAAGACCAGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCT
66 TGAGGGTTGCGGCAGCAAGACCAGTAGCAGGATCGACAGCACGCAGGGGGGACCAAGTCGATCCT
13730079 CGACTTGCATATTCTGCCTCTCCGATCGACCTCTTCGGTCGGTTGAGTGCCCACACGCTCGTTTC
131 CGACTTGCATATTCTGCCTCTCCGATCGACCTCTTCGGTCGGTTGAGTGCCCACACGCTCGTTTC
**
13730144 ATGGGTTAACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAA
196 ATGGGTTAACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACAAAGATCATTCCCAGTCTAA
13730209 GATCGAACCAGATCGAGGGTTACGGTAGCAGGATCGACAAAACGGAGGGGGGATCAGGCCAATCC
261 GATCGAACCAGATCGAGGGTTACGGTAGCAGGATCGACAAAACGGAGGGGGGATCAGGCCAATCC
*
13730274 CTGGCTTTTACATTCTGCCTCTCCGACCGACTGAGCGCTTGCACACCCGTTTCATGGGTTCGCTT
326 CTGGCTTTTACATTCTGCCTCTCCGACCGACTGAACGCTTGCACACCCGTTTCATGGGTTCGCTT
13730339 AGGCATAGGGTGTTCATTCCATGTATAA
391 AGGCATAGGGTGTTCATTCCATGTATAA
13730367 ACCCCAGTCG
Statistics
Matches: 396, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
418 396 1.00
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.25
Consensus pattern (418 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGAC
TGAGGGTTGCGGCAGCAAGACCAGTAGCAGGATCGACAGCACGCAGGGGGGACCAAGTCGATCCT
CGACTTGCATATTCTGCCTCTCCGATCGACCTCTTCGGTCGGTTGAGTGCCCACACGCTCGTTTC
ATGGGTTAACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACAAAGATCATTCCCAGTCTAA
GATCGAACCAGATCGAGGGTTACGGTAGCAGGATCGACAAAACGGAGGGGGGATCAGGCCAATCC
CTGGCTTTTACATTCTGCCTCTCCGACCGACTGAACGCTTGCACACCCGTTTCATGGGTTCGCTT
AGGCATAGGGTGTTCATTCCATGTATAA
Found at i:13731730 original size:26 final size:26
Alignment explanation
Indices: 13731694--13731749 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
13731684 TTGGTTGGCT
*
13731694 TAAGCATATGGAGTTCATTCC-ATGTC
1 TAAGCATATGGAGTTAATTCCTA-GTC
13731720 TAAGCATATGGAGTTAATTCCTAGTC
1 TAAGCATATGGAGTTAATTCCTAGTC
13731746 TAAG
1 TAAG
13731750 ATTGGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (26 bp):
TAAGCATATGGAGTTAATTCCTAGTC
Found at i:13732740 original size:158 final size:157
Alignment explanation
Indices: 13732504--13732941 Score: 423
Period size: 158 Copynumber: 2.8 Consensus size: 157
13732494 CAGGATCGGT
* * * * * * *
13732504 AGCACGTAGGAGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGGCTCTCCGACTGGCTGAGTGC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * * *
13732569 CCGCACGCATGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
66 CCGC-CGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCG
* * * * *
13732634 GATCGAGGGTTGTGGTAGCGGGACCGGC
130 GACCGAGGGTTGTAGCAGCAGGACCGAC
* * * * *
13732662 AGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCG
1 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
* * * * ** *
13732727 CCCGCCGCTTGTTTTGTGGGTTGACTTAGGTATACGAAGTTCATTCCCA-GTCTAAGATCAAATC
65 CCCGCCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACC
*
13732791 GGACCGAGGGTTGTAGCAGCAGGATCGAC
129 GGACCGAGGGTTGTAGCAGCAGGACCGAC
* *** * * * *
13732820 AGCATGCAGGGGGGATCGAGTTGGA-CCCTGGCTTACGTATTCTACCT-TTCCGACCGGCTGAGC
1 AGCACGCAGGGGGGATCG-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTT-CGACCGGCTGAGC
* ** * *
13732883 GCCCGTACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTAATTCCATGTCTAAGC
64 GCCCG-CCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13732942 ATATGGAGTT
Statistics
Matches: 222, Mismatches: 52, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
156 2 0.01
157 43 0.19
158 125 0.56
159 52 0.23
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
CCGCCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGG
ACCGAGGGTTGTAGCAGCAGGACCGAC
Found at i:13732943 original size:26 final size:26
Alignment explanation
Indices: 13732914--13732966 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13732904 GTTGGTTTAG
13732914 GCATACGGAGTTAATTCC-ATGTCTAA
1 GCATACGGAGTTAATTCCTA-GTCTAA
* *
13732940 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCTAGTCTAA
13732966 G
1 G
13732967 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCTAGTCTAA
Found at i:13733457 original size:26 final size:26
Alignment explanation
Indices: 13733427--13733479 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13733417 GTTAGCTTAG
13733427 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13733453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13733479 G
1 G
13733480 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13733514 original size:513 final size:508
Alignment explanation
Indices: 13732340--13733517 Score: 1475
Period size: 513 Copynumber: 2.3 Consensus size: 508
13732330 TACCACCCGT
* ** * * *
13732340 TCGATCCCCGGCTTACGCATTCAGCCTC-TCTGGTCGGCTGAGCGTCCGCAAGCTCATTTTGTGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTTC-GACCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* ** * **
13732404 GTTGACATAGGCATACAAAGTTCATCCCCGGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
65 GTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
13732469 CGGATTGGACTGAGGGTT----A-C--GA-TAGCAGGATCGGTAGCACGTAGGAGGGATCGGGCC
129 CGGATCGGACTGAGGGTTGGACAGCAGGACCAGCAGGATCGGTAGCACGTAGGAGGGATCGGGCC
* * * *
13732526 GATCCCCGGCTTGTGCATTCTGGCTCTCCGACTGGCTGAGTGCCCGCACGCATGTTTCGTGGGTT
194 GATCCCCGGCTTGCGCATTCTGGCTCTCCGACAGGCTGAGTGCCCGCACACACGTTTCGTGGGTT
* * *
13732591 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGTAGCGGG
259 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGG
* *
13732656 ACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGC
324 ACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCAGC
* ** *
13732721 TCAGCGCCCGCCGCTTGTTTTGTGGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAAGATC
389 TCAGCGCCCGACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
13732786 AAATCGGACCGAGGGTTGTAGCAGCAGGATCGACAGCATGCAGGGGGGATCGAGT
454 AAACCGGACAGAGGGTTGCAGCAGCAGAATCGACAGCACGCAGGGGCGACCGAGG
* * * * *
13732841 TGGA-CCCTGGCTTACGTATTCTACCT-TTCCGACCGGCTGAGCGCCCGTACGCTCATTTCGTGG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTT-CGACCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* * * *
13732904 GTTGGTTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGAT
65 GTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
13732969 CAGACCGGATTGAGGGTTGTGACAGTAGGACCAGCAGTAGCATCGGCTA-CACGTAGGGGGGATC
129 CGGATCGGACTGAGGGTTG-GACAGCAGGACCAGCAG--G-ATCGG-TAGCACGTAGGAGGGATC
* * * *
13733033 GGGCTGATCCCCGGCTTGCGCATTCTGTG-TCTCTGGCAGGCTGAGTGCCCGCTCACACGTTTCG
189 GGGCCGATCCCCGGCTTGCGCATTCTG-GCTCTCCGACAGGCTGAGTGCCCGCACACACGTTTCG
* *
13733097 TGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGC
253 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
* * * * *
13733162 AGCGGGACTGGCATCACGTAGAGGGGGATCGGGTCGATCCCTAGCTTGCGCATTATGCCTCTCCA
318 AGCGGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCA
** * * *
13733227 GCTGGCTCAGTGCCCGTACGCTCATTTTGTGTGTTGACTTAGGCATACGAAGTTCATTGCCAGTC
383 GCCAGCTCAGCGCCCG-ACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
** *
13733292 TAAGATCTGACCGGACAGAGGGTTGCAGCAGTAGAATCGACAGCACGCAGGGGCGACCG-GG
447 TAAGATCAAACCGGACAGAGGGTTGCAGCAGCAGAATCGACAGCACGCAGGGGCGACCGAGG
* * * * *
13733353 TCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCACTTCATGCG
1 TCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
13733418 TTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
*
13733483 GGATCGGACCGAGGGTTGCGACAGCAGGACCAGCA
130 GGATCGGACTGAGGGTTG-GACAGCAGGACCAGCA
13733518 ACAGGATAGG
Statistics
Matches: 568, Mismatches: 89, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
500 113 0.20
501 5 0.01
505 1 0.00
508 2 0.00
509 5 0.01
511 1 0.00
512 208 0.37
513 231 0.41
514 2 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (508 bp):
TCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GATCGGACTGAGGGTTGGACAGCAGGACCAGCAGGATCGGTAGCACGTAGGAGGGATCGGGCCGA
TCCCCGGCTTGCGCATTCTGGCTCTCCGACAGGCTGAGTGCCCGCACACACGTTTCGTGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGAC
CGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCAGCTC
AGCGCCCGACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAA
ACCGGACAGAGGGTTGCAGCAGCAGAATCGACAGCACGCAGGGGCGACCGAGG
Found at i:13733763 original size:26 final size:26
Alignment explanation
Indices: 13733727--13733779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13733717 GTTGGCTTAG
**
13733727 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13733753 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13733779 G
1 G
13733780 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13734007 original size:26 final size:26
Alignment explanation
Indices: 13733977--13734029 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13733967 GTTGGCTTAG
13733977 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
13734003 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
13734029 G
1 G
13734030 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:13734145 original size:13 final size:13
Alignment explanation
Indices: 13734123--13734162 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
13734113 ATGCATTCTG
*
13734123 CCTCTTCGGCTGA
1 CCTCTCCGGCTGA
13734136 CCTCTCCGGCTGA
1 CCTCTCCGGCTGA
13734149 CCTCTCCGGCTGA
1 CCTCTCCGGCTGA
13734162 C
1 C
13734163 TGAGTACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.07, C:0.45, G:0.23, T:0.25
Consensus pattern (13 bp):
CCTCTCCGGCTGA
Found at i:13734228 original size:26 final size:26
Alignment explanation
Indices: 13734199--13734251 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13734189 GTTGACTTAG
13734199 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13734225 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13734251 G
1 G
13734252 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13734570 original size:26 final size:26
Alignment explanation
Indices: 13734540--13734592 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13734530 GTTGGCTTAG
13734540 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13734566 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13734592 G
1 G
13734593 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13736738 original size:185 final size:184
Alignment explanation
Indices: 13736480--13736970 Score: 565
Period size: 185 Copynumber: 2.7 Consensus size: 184
13736470 CAGGATCAAT
* * * *
13736480 AGCACGCATGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCAACCGATTGAGCG
1 AGCACGCA-AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCG
* * * * *
13736545 CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGCCTAAGCATATGGA
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGAA
* * *** *
13736610 GTTCATT-CTCAGTCTAAGATTGAACCAAACTGAGGGTTGCGGTAGCTAGATCGAC
130 GTTCATTCCT-AGTCTAAGATCGAACCAAACCGAGGGTTGCAACAGCAAGATCGAC
* * * * *
13736665 AGCACGCCAAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTTTGCCTCTCCGACTGACTGAGCG
1 AGCACG-CAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCG
* * * * * * * *
13736730 TCCGCACGCTTGTTTCGTTGGTTGACATAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACGA
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCAATGTCTAAGCATACGA
* *
13736794 AGTTCATTCCTATTCTAAGATCGGACCAAACCGAGGGTTGCAACAGCAAGATCGAC
129 AGTTCATTCCTAGTCTAAGATCGAACCAAACCGAGGGTTGCAACAGCAAGATCGAC
* * * ** * *
13736850 AGCACGGATGGGGG-TCCGGGTCGATCCCCGGCTTGCATATTCTGCCTCTCCGGCCGATTGAGCA
1 AGCACGCAAGGGGGAT-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCG
* *
13736914 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAG
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAG
13736971 ACCCAGCCGG
Statistics
Matches: 251, Mismatches: 50, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
183 3 0.01
184 89 0.35
185 153 0.61
186 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (184 bp):
AGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGAAG
TTCATTCCTAGTCTAAGATCGAACCAAACCGAGGGTTGCAACAGCAAGATCGAC
Found at i:13743843 original size:25 final size:25
Alignment explanation
Indices: 13743815--13743865 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
13743805 GTTGACTTAG
13743815 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCA-TCTAA
13743840 GCATACGGAGTTCATTCCCATCTAA
1 GCATACGGAGTTCATTCCCATCTAA
13743865 G
1 G
13743866 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCATCTAA
Found at i:13744117 original size:146 final size:148
Alignment explanation
Indices: 13743960--13744311 Score: 382
Period size: 151 Copynumber: 2.4 Consensus size: 148
13743950 GGCGAGCGCG
* * *
13743960 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGA-
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACGGAC
** *
13744023 CGAGGGTTGTGGCA-CGGGACCG-CAGCA-GAGAGGGGACCAGG-GATCCTCAGCTTGCGCATTA
66 CGAGGGTTGCAGCAGCAGGACCGACAGCACG-G-GGGGACCAGGCGATCCTCAGCTT--GCATTA
*
13744084 TGCCTCTCGTGGCTC-AGCGCCCA
127 TGCCTCTC-TGGC-CGAGAGCCCA
* * *
13744107 CACGCT-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATCGG
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGA-CGG
* * * * *
13744169 ACCGAGGGTTGCAGCAGCAGGATCGACAGCACGGGGGGATCGGGCCGATCCTCGGCTTGCATTCT
64 ACCGAGGGTTGCAGCAGCAGGACCGACAGCACGGGGGGACCAGG-CGATCCTCAGCTTGCATTAT
* *
13744234 GCCTCTCTGGCCGGTTGAGCCCG
128 GCCTCTCTGGCC-G-AGAGCCCA
13744257 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13744312 TACGGAGTTC
Statistics
Matches: 171, Mismatches: 19, Indels: 25
0.80 0.09 0.12
Matches are distributed among these distances:
145 4 0.02
146 41 0.24
147 10 0.06
148 16 0.09
149 27 0.16
150 17 0.10
151 54 0.32
152 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (148 bp):
CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACGGAC
CGAGGGTTGCAGCAGCAGGACCGACAGCACGGGGGGACCAGGCGATCCTCAGCTTGCATTATGCC
TCTCTGGCCGAGAGCCCA
Found at i:13744282 original size:151 final size:148
Alignment explanation
Indices: 13743840--13744309 Score: 454
Period size: 146 Copynumber: 3.2 Consensus size: 148
13743830 CCCAGTCTAA
* * *
13743840 GCATACGGAGTTCATTCCCA--TCTAAGATCGGACCGGA-GAGGGTTGCGGACAGGATCGATAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGGACGAGGGTTGCGCACAGGATCGACAGC
* * * * *
13743902 ACGCAGGGGGACCGGCCAATCC-CGGCTTGCGCATTCTGCCTCTC-GACCGG-CGAGCGCGCACG
64 ACG-AGGGGGACAGGCCGATCCTCGGCTT-CGCATTCTGCCTCTCTGGCCGGTAGAGCCCGCACG
*
13743964 CCCGTTTCATGGGTTGGCTTAG
127 CTCGTTTCATGGGTTGGCTTAG
* ** * * *
13743986 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACGAGGGTTGTGGCACGGGACCG-CAGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACGGACGAGGGTTG-CGCACAGGATCGACAGC
* * * *
13744049 A-GAGAGGGGACCAGG--GATCCTCAGCTTGCGCATTATGCCTCTCGTGG-C--TCAGCGCCCAC
64 ACGAG-GGGGA-CAGGCCGATCCTCGGCTT-CGCATTCTGCCTCTC-TGGCCGGT-AGAGCCCGC
* *
13744108 ACGCT-GTTTCGTGGGTTGACTTAG
124 ACGCTCGTTTCATGGGTTGGCTTAG
13744132 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGA-CGGA-CGAGGGTTGC-GCA-CAGGATCGAC
* *
13744196 AGCACG-GGGGGATCGGGCCGATCCTCGGCTT-GCATTCTGCCTCTCTGGCCGGTTGAGCCCGCA
61 AGCACGAGGGGGA-CAGGCCGATCCTCGGCTTCGCATTCTGCCTCTCTGGCCGGTAGAGCCCGCA
13744259 CGCTCGTTTCATGGGTTGGCTTAG
125 CGCTCGTTTCATGGGTTGGCTTAG
13744283 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13744310 CATACGGAGT
Statistics
Matches: 261, Mismatches: 36, Indels: 49
0.75 0.10 0.14
Matches are distributed among these distances:
145 13 0.05
146 86 0.33
147 35 0.13
148 26 0.10
149 28 0.11
150 17 0.07
151 55 0.21
152 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (148 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGGACGAGGGTTGCGCACAGGATCGACAGCAC
GAGGGGGACAGGCCGATCCTCGGCTTCGCATTCTGCCTCTCTGGCCGGTAGAGCCCGCACGCTCG
TTTCATGGGTTGGCTTAG
Found at i:13744313 original size:26 final size:26
Alignment explanation
Indices: 13744283--13744335 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13744273 GTTGGCTTAG
13744283 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13744309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13744335 G
1 G
13744336 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13744688 original size:26 final size:26
Alignment explanation
Indices: 13744651--13744703 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13744641 GTTGACTTAG
13744651 GCATATGAAGTTCATCCCCAATCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
* * *
13744677 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
13744703 G
1 G
13744704 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAATCTAA
Found at i:13745028 original size:157 final size:159
Alignment explanation
Indices: 13744705--13745173 Score: 455
Period size: 159 Copynumber: 3.0 Consensus size: 159
13744695 CAGTCTAAGA
* * ** * * **
13744705 TCGGACCGAGGGTTGCGACAGCAAGATTGGCAGCATGCAGAGGGGACCGGGCCGATCCTTGGCTT
1 TCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTT
* * * ** * *
13744770 GCGCATTCTGCGTCTCCGGTCGAATGAGTGCCCTGCACACCTGTTTCGTGGGTTGGCTTAGGCAT
66 GCGCATTCTGCCTCTCCAGCCGAATGAGCACCCTACACACCTGTTTCGTGGGTTCGCTTAGGCAT
13744835 AGGGAGTTCATTCCATGTCTAAGCCCCAC
131 AGGGAGTTCATTCCATGTCTAAGCCCCAC
* * * * *
13744864 TCAGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCGGGGGGGATCGGGCCTATCCCCGGCTT
1 TCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTT
* * * *
13744929 GCGCATTCTGCCTCTCCAGCCG-GTGAGCACCC-ACACGCCTGTTTTGTGGGTTCGTTTAGGCAT
66 GCGCATTCTGCCTCTCCAGCCGAATGAGCACCCTACACACCTGTTTCGTGGGTTCGCTTAGGCAT
*
13744992 AGGGAGTTCATTCCATGTCTAAGCCCCAG
131 AGGGAGTTCATTCCATGTCTAAGCCCCAC
* * ** * * * * *
13745021 TCGGACCGAGGGTTGTCGCAGCGGGACCGATAACACACAGAGGGGGACAGGGTCGATCCCCGGTT
1 TCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGA-GGGGACCGGGCCGATCCCCGGCT
* * * * * * * *
13745086 TGTGCATTATGCCTCTTC-GACTGGATCAGCACCC-ACACACTCT-TTTCATGGGTT-GACTTAT
65 TGCGCATTCTGCCTCTCCAG-CCGAATGAGCACCCTACACAC-CTGTTTCGTGGGTTCG-CTTAG
** *
13745147 GCATACAGAGTTCATTCCAAGTCTAAG
127 GCATAGGGAGTTCATTCCATGTCTAAG
13745174 ATCGAACCAG
Statistics
Matches: 252, Mismatches: 53, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
157 87 0.35
158 43 0.17
159 120 0.48
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
TCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTT
GCGCATTCTGCCTCTCCAGCCGAATGAGCACCCTACACACCTGTTTCGTGGGTTCGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAC
Found at i:13746423 original size:159 final size:157
Alignment explanation
Indices: 13746047--13746439 Score: 371
Period size: 159 Copynumber: 2.5 Consensus size: 157
13746037 AAGCATACGG
* * * * *
13746047 AGTTCATTCCCAGTCTAAGATTGGACTGGATCAAGGATTGCGACAGCAGGATTGGTAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATTGGAC-AGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAG
* * * * *
13746112 GGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTACCTCTTCGGTCGGCTGAGCGCCTGCACGTC
65 GGGGGACCGGCTCGATCCCCAGCTTGCGCATTATACCTCTTCGGTCGGCTCAGCGCCCGCACGTC
* * ***
13746177 CGTTTCGTGGGTTGGCTTAGGCATAGGG
130 CATTTCGTGGGTTGACTTAGGCATACAA
* ** * * * * * *
13746205 AGTTCATT-CCATGTCTAAGCCTCAGCCAGACCGATGGTTGTGGCAGCAGGACCGGTAGCACGTA
1 AGTTCATTCCCA-GTCTAAG-ATTGGACAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCA
* ** * * *
13746269 GATGGGGATTGGACT-GATCCTCAGCTTGCGCATTATGCCTC-TCTGGTCGGCTCAGCGCCCGTA
64 G-GGGGGACCGG-CTCGATCCCCAGCTTGCGCATTATACCTCTTC-GGTCGGCTCAGCGCCCGCA
*
13746332 TG-CTCATTTCGTGGGTTGACTTAGGCATACAA
126 CGTC-CATTTCGTGGGTTGACTTAGGCATACAA
* * *
13746364 AGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGACAGTAGGATCGATAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATTGGA-CAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAG
13746429 GGGGTGACCGG
65 GGGG-GACCGG
13746440 GCCATTCCTC
Statistics
Matches: 180, Mismatches: 46, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.02
158 51 0.28
159 122 0.68
160 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATTGGACAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGG
GGGGACCGGCTCGATCCCCAGCTTGCGCATTATACCTCTTCGGTCGGCTCAGCGCCCGCACGTCC
ATTTCGTGGGTTGACTTAGGCATACAA
Found at i:13746554 original size:26 final size:27
Alignment explanation
Indices: 13746515--13746568 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
13746505 GTTGGCTTAG
13746515 GCATACGGAAGTTCATTCCATGTCTAA
1 GCATACGGAAGTTCATTCCATGTCTAA
*
13746542 GCATAC-GAAGTTCATTCCCTGTCTAA
1 GCATACGGAAGTTCATTCCATGTCTAA
13746568 G
1 G
13746569 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (27 bp):
GCATACGGAAGTTCATTCCATGTCTAA
Found at i:13746801 original size:26 final size:26
Alignment explanation
Indices: 13746765--13746816 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13746755 GTTGACTTAG
*
13746765 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
13746791 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13746817 AATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13746979 original size:26 final size:26
Alignment explanation
Indices: 13746949--13747001 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13746939 GTTGGTTTAG
13746949 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
13746975 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
13747001 G
1 G
13747002 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:13747414 original size:26 final size:26
Alignment explanation
Indices: 13747366--13747418 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13747356 GTTGACTTAG
* *
13747366 GCATACGGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
13747392 GCATACAGAGTTCAT-TCCCAGTCTAA
1 GCATACAGAGTTCATCT-CCAGTCTAA
13747418 G
1 G
13747419 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTCTAA
Found at i:13747836 original size:151 final size:149
Alignment explanation
Indices: 13747479--13747884 Score: 381
Period size: 157 Copynumber: 2.7 Consensus size: 149
13747469 GGATCGGGCC
* * ** * * * *
13747479 GATCCCTGACTTACGCATTATGCCTCTTTGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCAGGCTTACGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCGTTTCATGTGTT
* * * * * *
13747544 GACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACTGAAGGTTGCGTAG-TAG
66 GACTTA-GCATACAGAGTTCATTCCCAGTCTAAG--C---CCTAGTC-G--GCTTACGCAGCGA-
** * *
13747607 GATCGACAGCATGCAGGGGGGATCGGGTT
121 GATCGGTAGCATGCAGGGGGGACCAGGTT
* * * * *
13747636 GATCCCAGGCTTGCGCATTCTGCCTCTCTGCCTGGCTGAGCGCCCGCACGCTCGTTTCATAG-GT
1 GATCCCAGGCTTACGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCGTTTCAT-GTGT
*
13747700 TGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCTAGTCGGCTTACGCAGCGAGATCGGT
65 TGACTTA-GCATACAGAGTTCATTCCCA-GTCTAAGCCCTAGTCGGCTTACGCAGCGAGATCGGT
13747764 AGCATGCAGAGGGGGACCAGGTT
128 AGCATGCAG-GGGGGACCAGGTT
* * * *
13747787 GATCCTC-GGCTTATGCATTATGCCTCTCCGACTGGCTCAGTGCTCGCACGCTCGTTTCGTGTGT
1 GATCC-CAGGCTTACGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCGTTTCATGTGT
*
13747851 TGACTTAGCATACGGAGTTCATTCCCAGTCTAAG
65 TGACTTAGCATACAGAGTTCATTCCCAGTCTAAG
13747885 ATCGGACCAG
Statistics
Matches: 208, Mismatches: 33, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
150 44 0.21
151 72 0.35
152 4 0.02
153 3 0.01
155 1 0.00
156 3 0.01
157 80 0.38
158 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.28, T:0.27
Consensus pattern (149 bp):
GATCCCAGGCTTACGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCGTTTCATGTGTT
GACTTAGCATACAGAGTTCATTCCCAGTCTAAGCCCTAGTCGGCTTACGCAGCGAGATCGGTAGC
ATGCAGGGGGGACCAGGTT
Found at i:13748029 original size:308 final size:309
Alignment explanation
Indices: 13747475--13748359 Score: 967
Period size: 308 Copynumber: 2.8 Consensus size: 309
13747465 AGGGGGATCG
* * * *
13747475 GGCCGATCCCTGACTTACGCATTATGCCTCTTTGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
1 GGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * *
13747540 GGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAAGGTTGCGTAGT
66 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGTAGC
* * * * * *
13747605 AGGATCGACAGCATGCAGGGGGGATCGGGTTGATCCCAGGCTTGCGCATTCTGCCTCTCT-GCCT
131 AGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGGCC-
* * * * * *
13747669 GGCTGAGCGCCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
195 GGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAA
* * * * *
13747734 GCCCTAGTCGG-C-TTAC-GCAGCGAG-ATCGGTAGCATGCAGAGG-GGGACCA
259 GCCCGAATCGGACGTTACGGCAG-GAGTATCAGCAGCA--CACAGGAGGGACCA
** * * * ** *
13747783 GGTTGATCCTCGGCTTATGCATTATGCCTCTCCGACTGGCTCAGTGCTCGCACGCTCGTTTCGTG
1 GGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
* *
13747848 TGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAG
66 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GTAG
* *
13747912 CAGGATCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGGCTTGTGCATTATGCCTCTTTGGCC
130 CAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGGCC
* * *
13747977 GGCTGAGCACCCACATGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
195 GGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
** * * ***
13748042 GATCGAATCGGACTGAGGGTTACGGTAGTAGTATCAGCAGCACACAGGAGGGATTG
259 GCCCGAATCGGAC-----GTTACGGCAGGAGTATCAGCAGCACACAGGAGGGACCA
* * * * * * *
13748098 GGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGACCGACTGAGCACCCGCACGCCCGGTTCGTG
1 GGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * *
13748163 GGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCTGTAG
66 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GTAG
* * * * * * *
13748228 CAGGATCGACAACACACTA-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTACGCCTCTTCGGT
130 CAGGATCGACAGCACGC-AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGGC
* * * * *
13748292 CGGCTAAGCGCCCACACACTCATTTCGTGGATTGACTTAGGCATATGGAGTTCATCCCCAGTCTA
194 CGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTA
13748357 AGC
258 AGC
13748360 ATATGGAGTT
Statistics
Matches: 477, Mismatches: 84, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
307 47 0.10
308 177 0.37
309 7 0.01
314 5 0.01
315 68 0.14
316 172 0.36
317 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (309 bp):
GGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGTAGC
AGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGGCCG
GCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGC
CCGAATCGGACGTTACGGCAGGAGTATCAGCAGCACACAGGAGGGACCA
Found at i:13748064 original size:158 final size:158
Alignment explanation
Indices: 13747392--13748358 Score: 881
Period size: 158 Copynumber: 6.2 Consensus size: 158
13747382 TCTAGTCTAA
* ** * ** *
13747392 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCCA-GA-CCAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAG-CAGGATCGA-
* * * * * * *
13747455 CAGTACGCAGAGGGGGATCGGGCCGATCCCTGACTTACGCATTATGCCTCTTTGACCGGCTCAGC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGC
*
13747520 ACCCGCACGCTCGTTTCGTGGGTTGACTTAT
128 ACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
13747551 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAAGGTTGC-GTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGCAGGATCGACA
* * ** * * *
13747615 GCATGCAGGGGGGATCGGGTTGATCCCAGGCTTGCGCATTCTGCCTC-TCTG-CCTGGCTGAGCG
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-GACC-GGCTGAGCA
* * *
13747678 CCCGCACGCTCGTTTCATAGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
13747708 GCATACAGAGTTCATT-CCATGTCTAAG--C---CC-TAGT-CGGCTTAC-GCAGC-GAGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTACGGTAGCAG-GATCGA
* * * ** * ** * * * *
13747763 TAGCATGCAGAGGGGGACCAGGTTGATCCTCGGCTTATGCATTATGCCTCTCCGACTGGCTCAGT
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGC
* * *
13747828 GCTCGCACGCTCGTTTCGTGTGTTGACTTA-
128 ACCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13747858 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGCAGGATCGACA
* * * * *
13747923 GCACGCAGGGGGGACCGGGTCGGTCCCCGGCTTGTGCATTATGCCTCTTTGGCCGGCTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCACC
* * * *
13747988 CACATGCTCATTTCGTGGGTTGACTTAT
131 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
13748016 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTACGGTAGTAGTATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGCAGGATCGA-C
* * ** * * * *
13748080 AGCACACAGGAGGGATTGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGACCGACTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCAC
* * *
13748145 CCGCACGCCCGGTTCGTGGGTTCACTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
13748174 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCTGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGCAGGATCGACA
* * * * ** * *
13748239 ACACACTA-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTACGCCTCTTCGGTCGGCTAAGCGC
66 GCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCAC
* * * *
13748303 CCACACACTCATTTCGTGGATTGACTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13748332 GCATATGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
13748359 CATATGGAGT
Statistics
Matches: 654, Mismatches: 131, Indels: 47
0.79 0.16 0.06
Matches are distributed among these distances:
149 1 0.00
150 43 0.07
151 69 0.11
152 5 0.01
155 3 0.00
156 8 0.01
157 164 0.25
158 312 0.48
159 49 0.07
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13748233 original size:316 final size:311
Alignment explanation
Indices: 13747392--13748358 Score: 1018
Period size: 316 Copynumber: 3.1 Consensus size: 311
13747382 TCTAGTCTAA
* * * * * *
13747392 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCCAGACCATCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGA-C-AGGGTTACGGCAGCCAGATCAGCA
* * * * * *
13747457 GTACGCAGAGGGGGATCGGGCCGATCCCTGACTTACGCATTATGCCTCTTTGACCGGCTCAGCAC
64 G--CACACAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCAC
13747522 CCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
127 CCGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * * *
13747587 GACTGAAGGTTGCGTAGTAGGATCGACAGCATGCAGGGGGGATCGGGTTGATCCCAGGCTTGCGC
191 GACTGAGGGTTGCGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGC
* * * * * * *
13747652 ATTCTGCCTCTCT-GCCTGGCTGAGCGCCCGCACGCTCGTTTCATAGGTTGGCTTAG
256 ATTATGCCTCTTTGGCC-GGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAG
** * * * * *
13747708 GCATACAGAGTTCATT-CCATGTCTAAGCCCTAGTCGG-C----TTAC-GCAGCGAGATCGGTAG
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAATCGGACAGGGTTACGGCAGCCAGATCAGCAG
* * * ** * * * ** *
13747766 CATGCAGAGGGGGACCAGGTTGATCCTCGGCTTATGCATTATGCCTCTCCGACTGGCTCAGTGCT
65 CA--CACAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCACC
*
13747831 CGCACGCTCGTTTCGTGTGTTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
128 CGCACGCTCGTTTCGTGGGTTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * *
13747896 CTGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGGCTTGTGCA
193 CTGAGGGTTGC-GTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCA
* * *
13747961 TTATGCCTCTTTGGCCGGCTGAGCACCCACATGCTCATTTCGTGGGTTGACTTAT
257 TTATGCCTCTTTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAG
* * *
13748016 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTACGGTAG-TAGTATCAGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGAC--AGGGTTACGGCAGCCAG-ATCAGC
* * * * * *
13748080 AGCACACAGGAGGGATTGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGACCGACTGAGCAC
63 AGCACACAGG-GGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCAC
* * * * *
13748145 CCGCACGCCCGGTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCG
127 CCGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * *
13748210 GACTGAGGGTTGCTGTAGCAGGATCGACAACACACTA-GGGGGACCGGGCCGATCCTCGGCTTGC
191 GACTGAGGGTTGC-GTAGCAGGATCGACAGCACGC-AGGGGGGACCGGGTCGATCCCCGGCTTGC
* * * * * *
13748274 GCATTACGCCTCTTCGGTCGGCTAAGCGCCCACACACTCATTTCGTGGATTGACTTAG
254 GCATTATGCCTCTTTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAG
** *
13748332 GCATATGGAGTTCATCCCCAGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
13748359 CATATGGAGT
Statistics
Matches: 534, Mismatches: 99, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
306 1 0.00
307 47 0.09
308 198 0.37
309 10 0.02
314 6 0.01
315 71 0.13
316 200 0.37
317 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (311 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACAGGGTTACGGCAGCCAGATCAGCAGC
ACACAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCACCCGC
ACGCTCGTTTCGTGGGTTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
AGGGTTGCGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTAT
GCCTCTTTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAG
Found at i:13749019 original size:26 final size:26
Alignment explanation
Indices: 13748983--13749035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13748973 GTTGACTTAG
13748983 GCATAAAGAGTTCATCCCCAGTCTAA
1 GCATAAAGAGTTCATCCCCAGTCTAA
* *
13749009 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATCCCCAGTCTAA
13749035 G
1 G
13749036 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATAAAGAGTTCATCCCCAGTCTAA
Found at i:13749329 original size:159 final size:156
Alignment explanation
Indices: 13749016--13749393 Score: 398
Period size: 159 Copynumber: 2.4 Consensus size: 156
13749006 TAAGCATACA
* * ** *
13749016 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGTA
1 GAGTTCATT-CCAGTCTAAGA-CCAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACCTA
* * * * *
13749081 GGGGGGATCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGCACGC
64 GGGGGGACCGGGCCGATCCCCGGCTTACGCATTATACCTCTCCAGCCGGCTCAGTGCCCGCACGC
* * *
13749146 CCGTTTGATGGGTTGGCTTAGGCATAGG
129 CCATTTCATGGGTTGACTTAGGCATAGG
* * * *
13749174 GAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACCTA
1 GAGTTCATTCCA-GTCTAAG-ACCAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACCTA
* ** * * * * *
13749239 GAGGGGGACCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTCC-GACCGGCTCAGTGTCCGTAG
64 G-GGGGGACCGGGCCGATCCCCGGCTTACGCATTATACCTCTCCAG-CCGGCTCAGTGCCCGCAC
* *
13749303 GCTCATTTCATGGGTTGACTTAGGCATATG
127 GCCCATTTCATGGGTTGACTTAGGCATAGG
* * * *
13749333 GAGTTCATTCCAAATCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCA
1 GAGTTCATTCC-AGTCTAAGACCA-ACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
13749394 TGCAGGGGGG
Statistics
Matches: 179, Mismatches: 35, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 55 0.31
159 120 0.67
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (156 bp):
GAGTTCATTCCAGTCTAAGACCAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACCTAGG
GGGGACCGGGCCGATCCCCGGCTTACGCATTATACCTCTCCAGCCGGCTCAGTGCCCGCACGCCC
ATTTCATGGGTTGACTTAGGCATAGG
Found at i:13749521 original size:26 final size:26
Alignment explanation
Indices: 13749485--13749536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13749475 TTGGCTTAGA
13749485 CATACGGAGTTCATTC-CATGTCTAAG
1 CATACGGAGTTCATTCTCA-GTCTAAG
13749511 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCTCAGTCTAAG
13749537 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCTCAGTCTAAG
Found at i:13749855 original size:501 final size:495
Alignment explanation
Indices: 13748910--13750513 Score: 1726
Period size: 501 Copynumber: 3.2 Consensus size: 495
13748900 ACCACCCGTT
* * * **** * *
13748910 CGATCCCCGACTTGCGCATCCTGCCTCTCTGGTTGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* *
13748975 TGACTTAGGCATAAAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-
66 TGACTTAGGCATACAGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCA
* * * * ** *
13749039 GAACCGGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCCGATCCCCGG
129 G-ACTGGATC-AAGGTTACGGTAGCAGGATCGGTAGCACG-AGAAGGGACCGGGCCGAT-CCCGG
*** * * * *
13749104 CTTATGCATTCTACCTC-TCCAGTCGGCTGAGTGCCCGCACGCCCGTTTGATGGGTTGGCTTAGG
190 CTTGCACATTCTGCCTCTTCGA-TCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
* *
13749168 CATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAGCGGGATCGACAG
254 CATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGA-CGATAG
* ** * * *
13749233 CAC-CTAGAGGGGGACCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGT
318 CACGC-AGAAGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGC
* * * * *
13749297 CCGTAGGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCAAATCTAAGATCAGACCG
382 CCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * ** **
13749362 GACCGAGGGTTGCGGTAGTAGGATCGACAGCATGCAGGGGGGATTGGAT
447 GATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGC
* * * * * * *
13749411 CGGTCCCCGACTTACGTATTCTGGCTCTCCGGCCAGTTGAGCACCCGTACACTCGTTTCGTGGGT
1 CGATCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * *
13749476 TGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCA
66 TGACTTAGGCATACAGAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCA
*
13749541 GACTGGATCAAGGATTACGGTAGCAGGATCGGTAGCACGCAGAAGGGACCGAGCCGATCCTCGGC
129 GACTGGATCAAGG-TTACGGTAGCAGGATCGGTAGCACG-AGAAGGGACCGGGCCGATCC-CGGC
* * * * **
13749606 TTGCACATTCCGCCTCTTCGATCGGCTAAACGCCTGCACGTTCGTTTCATGGGTTGGCTTAGGCA
191 TTGCACATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
** * ** *
13749671 TAGGTTGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAAGACAGATAACA
256 TAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGAC-GATAGCA
* * * *
13749736 CGCAGACGGGGACC-GGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGTTGGCTCAGTGCCC
320 CGCAGAAGGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGCCC
* * **
13749800 GCATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGA
384 GCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * *
13749865 TCGAGGGTTGCGACAATAGGATCGACAGCACACAAGGGGTGACCGGGC
449 TCGAGGGTTGCGGCAGTAGGATCGACAGCACGC-AGGGGGGACCGGGC
** * * * *
13749913 C-ATTCCCCGACTTGTGCATACTGCCTCTTCGACCTGCTAAGCACCCGCACGCTCGTTTCGTGGG
1 CGA-TCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGG
* * * * * *
13749977 TTCACTTTGGCATACGGAGTTTAGCCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGATC
65 TTGACTTAGGCATACAGAGTTCA-TCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATC
* * ** * * ** *
13750042 AGACTAGATCGACGGTTACGGTAGCAGGATCGACAGCACGAGGAAAGAACCGGGTAGATCACCGA
128 AGACTGGATC-AAGGTTACGGTAGCAGGATCGGTAGCACGA-GAAGGGACCGGGCCGATC-CCGG
* * * * *
13750107 CTTGCACATTCTGCCTTTTCGATCGGCTGAGCGCCCACACACCCATTTCATGGGTTAGCTTAGGC
190 CTTGCACATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
* *
13750172 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGC
255 ATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGA-CGATAGC
* * ** * * **
13750237 ACGTA-AAGGTGGACCGGGTCGATCTCCGGCTTGCGTGTTATGCCTCTCTGGGTGGCTCAGCACC
319 ACGCAGAAGG-GGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGCC
** * *
13750301 CGCATGCTCATTTCATGGGTTGACTTAATCATACGGAGTTCAATCCCAGTCTAAGATCAGATCGG
383 CGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** **
13750366 ATCGAGGGTTGTAGCAGTAGGATCGACAGCACGCACAGGGGACCGGGC
448 ATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGC
* * * * *
13750414 CGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCACACCCTCGTTTCGTGGGT
1 CGATCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * *
13750479 TGGCTGAGGCATGCAGAGTTCATTCCTAGTCTAAG
66 TGACTTAGGCATACAGAGTTCA-TCCCAGTCTAAG
13750514 ATCGGATCGG
Statistics
Matches: 907, Mismatches: 176, Indels: 40
0.81 0.16 0.04
Matches are distributed among these distances:
500 13 0.01
501 480 0.53
502 403 0.44
503 11 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (495 bp):
CGATCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAGA
CTGGATCAAGGTTACGGTAGCAGGATCGGTAGCACGAGAAGGGACCGGGCCGATCCCGGCTTGCA
CATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACGATAGCACGCAGA
AGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGCCCGCATGCT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
TTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGC
Found at i:13750480 original size:158 final size:159
Alignment explanation
Indices: 13750113--13750526 Score: 381
Period size: 158 Copynumber: 2.6 Consensus size: 159
13750103 CCGACTTGCA
* * * *
13750113 CATTCTGCCTTTTCGATCGGCTGAGCGCCCACACACC-CATTTCATGGGTT-AGCTTAGGCATAG
1 CATTCTGCCTCTCCGATCGGCTGAGCACCCACAC-CCTCATTTCATGGGTTGA-CTTAGGCATAC
* ** * * * **
13750176 GGAGTTC-ATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCAC
64 GGAGTTCAATCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTAGCAGCAGGACCGACAGCAC
* * * *
13750239 GTAAAGGTGGACCGGGTCGATCTCCGGCTTGCG
127 GCAAAGGTGGACCGGGCCGATCCCCGGCTTACG
** * * * * * ** **
13750272 TGTTATGCCTCTCTGGGT-GGCTCAGCACCCGCATGCTCATTTCATGGGTTGACTTAATCATACG
1 CATTCTGCCTCTC-CGATCGGCTGAGCACCCACACCCTCATTTCATGGGTTGACTTAGGCATACG
* * *
13750336 GAGTTCAATCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTAGCAGTAGGATCGACAGCACGCA
65 GAGTTCAATCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGACCGACAGCACGCA
*
13750401 CAGG-GGACCGGGCCGATCCCCGGCTTACG
130 AAGGTGGACCGGGCCGATCCCCGGCTTACG
* * * * * *
13750430 CATTCTGCCTCTCCGATCGGCTGAGCACCCACACCCTCGTTTCGTGGGTTGGCTGAGGCATGCAG
1 CATTCTGCCTCTCCGATCGGCTGAGCACCCACACCCTCATTTCATGGGTTGACTTAGGCATACGG
* * *
13750495 AGTTCATTCCTAGTCTAAGATCGGATCGGACC
66 AGTTCAATCCCAGTCTAAGATCAGATCGGACC
13750527 AAAAGTTGCG
Statistics
Matches: 197, Mismatches: 52, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 99 0.50
159 88 0.45
160 8 0.04
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CATTCTGCCTCTCCGATCGGCTGAGCACCCACACCCTCATTTCATGGGTTGACTTAGGCATACGG
AGTTCAATCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGACCGACAGCACGCAA
AGGTGGACCGGGCCGATCCCCGGCTTACG
Found at i:13750608 original size:26 final size:26
Alignment explanation
Indices: 13750572--13750624 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13750562 GTTGCCTTAG
* **
13750572 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13750598 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13750624 G
1 G
13750625 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13752817 original size:342 final size:340
Alignment explanation
Indices: 13752144--13753101 Score: 1095
Period size: 342 Copynumber: 2.8 Consensus size: 340
13752134 TCAATCCCCA
** * * * *
13752144 GCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGG
1 GCTTGCGCATTATGCCTCTCCGGTCGGCTCAGC-CCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * * * *
13752209 CATACGAAATTCATCCCCAGTCTACGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGGCT
65 CATACGGAGTTCATCCCCAGTCTAAGCATAGA-AGTTCATTCCCAGTCTAAGATCGGACCGAGCT
* * * ** * * * *
13752274 GAGGATTACGACAGCAGGATCGACAGCATGCAGAAGGGATCGAGTCAATCCCCGACTTGCGGATT
129 GAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCAG-CTTGCGCATT
* * * * * ** *
13752339 TTGCCTCTCTGGCCAGTTGAGCACCCGTACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTT
193 CTGCCTCTCTGGACAGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATCGGGAGTT
* * * * * *
13752404 CATTCCATGTCTAAGCCCCAGTCGAATCGAGGGTTGTCGCAGCGAGACCGACAGCACGCAGAGGG
258 CATTCCATGTCTAAGCCCCAGTCGAACCAAGGGTTGTCGCAGCGAGACCAACAGCACACAGAAGA
13752469 GGACCGGGTC-GATCC-CTG
323 GGACC-GGTCTGATCCTC-G
* * *
13752487 GCTTGCGCATTATGCCTCTCCCGTCGGCTCAGCCCCGCACGCTTGTTTCGTTGGTTGACTTAGGC
1 GCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
**
13752552 ATACGGAGTTCATTACCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGAGCTG
66 ATACGGAGTTCATCCCCAGTCTAAGCATA-GAAGTTCATTCCCAGTCTAAGATCGGACCGAGCTG
*
13752617 AGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGA-CTGGGCCGATCCCTAGCTTGCGCATT
130 AGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATC-GAGCCGATCCC-AGCTTGCGCATT
* *
13752681 CTGCCTCTCTGGTCAGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTACGCATCGGGAGTT
193 CTGCCTCTCTGGACAGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATCGGGAGTT
* *
13752746 CATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGAGACCAACAGCACACAGAAGA
258 CATTCCATGTCTAAGCCCCAGTCGAACCAAGGGTTGTCGCAGCGAGACCAACAGCACACAGAAGA
13752811 GGACCGGTCTGATCCTCG
323 GGACCGGTCTGATCCTCG
* * * * *
13752829 ACTTACGCATTATGCCTCTCCGGCCGACTCAGCCCCCGCACGCTCATTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTATGCCTCTCCGGTCGGCTCAG-CCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
13752894 CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT-CCAGGTCTAAGATTGAACCAAGC
65 CATACGGAGTTCATCCCCAGTCTAAGCATA-GAAGTTCATTCCCA-GTCTAAGATCGGACCGAGC
* * **
13752958 TGAGGGTTGCGACAGGAGGATTGACAGCACGCA-GGGGGATCGAGCCGATCCCCCA-CTTGCATA
128 TGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGAT--CCCAGCTTGCGCA
* * * * ** * * *
13753021 TTCTACCTCTC-CGACCGACTGAGCGCCCGCACGTTCGTTCCATGGGTTGGCTTAGGCATAC-TG
191 TTCTGCCTCTCTGGACAG-CTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT-CGGG
13753084 AGTTCATTCCATGTCTAA
254 AGTTCATTCCATGTCTAA
13753102 ACATACGGAG
Statistics
Matches: 525, Mismatches: 78, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
341 8 0.02
342 369 0.70
343 145 0.28
344 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (340 bp):
GCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATCCCCAGTCTAAGCATAGAAGTTCATTCCCAGTCTAAGATCGGACCGAGCTGA
GGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCAGCTTGCGCATTCTG
CCTCTCTGGACAGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATCGGGAGTTCAT
TCCATGTCTAAGCCCCAGTCGAACCAAGGGTTGTCGCAGCGAGACCAACAGCACACAGAAGAGGA
CCGGTCTGATCCTCG
Found at i:13753488 original size:26 final size:26
Alignment explanation
Indices: 13753435--13753488 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
13753425 TAGGTTGACT
* *
13753435 TAGGCATACAGAGTTCATCCCTAGTC
1 TAGGCATACAGAGTTCATCCCCAATC
*
13753461 TAGGTATACAGAGTTCATCCCCAATC
1 TAGGCATACAGAGTTCATCCCCAATC
13753487 TA
1 TA
13753489 AGATCAGATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAATC
Done.