Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 75 of 138
Found at i:13753851 original size:159 final size:159
Alignment explanation
Indices: 13753558--13753958 Score: 361
Period size: 159 Copynumber: 2.5 Consensus size: 159
13753548 CCGATCCTCG
*
13753558 GCTTGCGCAATTCGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTAGCTTAGG
1 GCTTGCGCAATTCGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTAGCTTAGG
* * * * *
13753623 CATAGGGAGTTCATTCCATGTCCAAGCCCCAACCAGACCAAGGGTTGCGGCAGCGAGATCAGTAG
66 CATACGGAGTTCATTCCATGTCCAAGACCCAACCAGACCAAGGGTTGCGACAGCGAGATCAGCAA
13753688 CATGCAGAGGGGGATCGGGTAGTTCCCTA
131 CATGCAGAGGGGGATCGGGTAGTTCCCTA
* * * * *
13753717 GCTTGCGC-ATTATGCCTCTTCGATCGGCTTAGTGCCCGCACGCTCGTTTCGTGGGTT-GACTTA
1 GCTTGCGCAATT-CGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTAG-CTTA
* * * *** * *
13753780 TGCATACGGAGTTCTTTTCCA-GTCTAAGATTGAACCAGACCAAGGGTTGCGATAGC-AGGAT-T
64 GGCATACGGAGTTC-ATTCCATGTCCAAGACCCAACCAGACCAAGGGTTGCGACAGCGA-GATCA
* ** * *
13753842 GACAACATGCAGA-GGGTA-CTGGGCCGAT-CCTC
127 G-CAACATGCAGAGGGGGATC-GGGTAGTTCCCTA
* * * * * * * * * *
13753874 GTTTTGCGTATTTTGCCTCTCTG-GCTGGCTGAACGCCTGCACGCTCGTTTCATGGGTTAGCTTA
1 G-CTTGCGCAATTCGCCTCTCCGATC-GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTAGCTTA
13753938 GGCATACGGAGTTCATTCCAT
64 GGCATACGGAGTTCATTCCAT
13753959 ATCTAAGCAT
Statistics
Matches: 194, Mismatches: 37, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
157 11 0.06
158 72 0.37
159 106 0.55
160 5 0.03
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.26
Consensus pattern (159 bp):
GCTTGCGCAATTCGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTAGCTTAGG
CATACGGAGTTCATTCCATGTCCAAGACCCAACCAGACCAAGGGTTGCGACAGCGAGATCAGCAA
CATGCAGAGGGGGATCGGGTAGTTCCCTA
Found at i:13754081 original size:11 final size:11
Alignment explanation
Indices: 13754061--13754093 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13754051 CCCGAGGTAC
*
13754061 CATCATCGGAG
1 CATCACCGGAG
13754072 CATCACCGGAG
1 CATCACCGGAG
13754083 CATCACCGGAG
1 CATCACCGGAG
13754094 AGCCAAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.12
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:13760615 original size:26 final size:26
Alignment explanation
Indices: 13760585--13760637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13760575 GTTGACTTAG
*
13760585 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
13760611 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13760637 G
1 G
13760638 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13761085 original size:158 final size:158
Alignment explanation
Indices: 13760611--13761269 Score: 709
Period size: 159 Copynumber: 4.2 Consensus size: 158
13760601 CCCAGTCTAA
* * * ** * * * *
13760611 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGGGCGAGGGTTACGGCAACAAGATC-AGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-C
* * ** *
13760675 AGCACGCAGGGGGGACCCGGCTAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
65 AGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
13760740 CCGCACG-T-ATGTTTCGTGGGTTGGCTTAG
130 CCGTACGCTCA--TTTCATGGGTTGGCTTAG
* ** ** * * * * *
13760769 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
13760833 AGCACGCAGATGGGGACCGGGCCGATCCCCTACTTGTGCATTATGCCTCTCCG-GCTAGCTCAGC
65 AGCACGCA-AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGC
* * *
13760897 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
128 GCCCGTACGCTCATTTCATGGGTTGGCTTAG
* * * *
13760928 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGCGGCATCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
13760993 GCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCTGGTCGGCTGAGCGCC
66 GCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
13761058 CGTACGCTCATTTCATGGGTTGGCTTAG
131 CGTACGCTCATTTCATGGGTTGGCTTAG
* *
13761086 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * *
13761151 GCACGC-AGGGACGGACCGAGCCGATCCCCGACTTGTGCATTCTGTCTCTTTGACCGACTGAGCG
66 GCACGCAAGGG--GGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
*
13761215 CCCGTACACTCATTTCATGGGTTGGCTTAG
129 CCCGTACGCTCATTTCATGGGTTGGCTTAG
*
13761245 GCATACGGAGTTCATTCCAAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
13761270 TGCCCCAGCC
Statistics
Matches: 416, Mismatches: 75, Indels: 19
0.82 0.15 0.04
Matches are distributed among these distances:
157 4 0.01
158 191 0.46
159 220 0.53
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGTACGCTCATTTCATGGGTTGGCTTAG
Found at i:13761187 original size:317 final size:316
Alignment explanation
Indices: 13760611--13762113 Score: 933
Period size: 317 Copynumber: 4.6 Consensus size: 316
13760601 CCCAGTCTAA
* * ** * * * *
13760611 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGGGC-GAGGGTTACGGCAACAAGATC-AG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACTGAGGGTTGCGGCAGCAGGATCGA-
* * * * *
13760674 TAGCACGCAGGGGGGACCCGGCTAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
64 CAGCACGCAAGGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCG
* * ** ** *
13760739 CCCGCACG-TATGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGT
128 CCCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATCAGA
* * * * * *
13760803 CGGACCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGATGGGGACCGGGCCGATCCCCTACTT
192 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTT
* * * *
13760868 GTGCATTATGCCTCTCCGGCTAG-CTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
257 GCGCATTATGCCTCTCCGAC-AGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
13760928 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGCGGCATCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
* * *
13760993 GCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCTGGTCGGCTGAGCGCC
66 GCACGCAAGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCC
* * *
13761058 CGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACTG
130 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATCAGAC-G
* * *
13761122 GACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG-GGACGGACCGAGCCGATCCCCGACTTG
194 GACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGG-GGGACCGAGCCGATCCCCGACTTG
* * * ** * * * * * *
13761186 TGCATTCTGTCTCTTTGACCGACTGAGCGCCCGTACACTCATTTCATGGGTTGGCTTAG
258 CGCATTATGCCTCTCCGACAGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * *
13761245 GCATACGGAGTTCATTCCAAGTCTATGCCCCAG-CCAGACCGAGGGTTGTGGTAGCACGATCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACTGAGGGTTG-CG--GCA-G--C---
* *
13761309 AGCGGGATCGACAACACGCAGAGGGGGACCGGGCTGAT-CCCGGCTTGCGCATTATGCCTCTCCG
56 A---GGATCGACAGCACGCA-AGGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCT-C-
* * * * *
13761373 ATCGACCTCCCCAACCGGCTGAGCGCCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATATGAA
114 -T-GA--T-------CGGCTGAGCG-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGA
* * * * ** * *
13761438 GTTCATCCCCAATCTCAA-CATACAGA-GTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGT
167 GTTCATTCCCAGTCT-AAGCAT-CAGACG--GA--CCGAGGGT-TG--CGG--C--AGC-A-GG-
** **** * *
13761501 TGCGACAGCAGGATCGACAGCACGCAGGGGGGACC-AGGCCGATTTGTGACTTACGCATTCTGCC
216 ACCG--A-CA-G--C-AC-GCA-G-A-GGGGGACCGA-GCCGATCCCCGACTTGCGCATTATGCC
* * * * * * * * *
13761565 TCTCCAACCGACTGAGTGCCTGCATGCCCGTTTCATGGGTTGGCTTAC
269 TCTCCGACAGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * * *
13761613 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CC-GACTGAGGGTTGTGGTAGCGGGATC-A
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGA
* * ** * * *
13761674 GCAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGATGAGT
64 -CAGCACGCAAGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGC
* * *
13761739 GCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA--CCCATGTGTAAGC-TCCA
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCA-GTCTAAGCAT-CA
* * * * * * * * * *
13761801 GTCAGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACCGGGACGATCCCCGGC
190 GACGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGAC
* * * * * *
13761866 TTGCGTATTATGCCTCTCAGGCCAG-CTCAACGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
255 TTGCGCATTATGCCTCTC-CGACAGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
13761928 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGG-AGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
13761992 GCACGCAAGGGGGGACCGGGTTGATCCCCGACTTACGCATTTTGCCT-TTTCGACCGGTTGAGCG
66 GCACGCAA-GGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCT-GATCGGCTGAGCG
* * * * * * **
13762056 CCCGCATGCTTGTTTCGTGGGTTAGCTTGGGCATATGGAGTTCATTCCGTGTCTAAGC
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGC
13762114 GTACGGAGTT
Statistics
Matches: 915, Mismatches: 188, Indels: 166
0.72 0.15 0.13
Matches are distributed among these distances:
314 3 0.00
315 99 0.11
316 108 0.12
317 297 0.32
318 11 0.01
319 2 0.00
320 4 0.00
322 1 0.00
323 3 0.00
326 3 0.00
327 2 0.00
329 38 0.04
330 16 0.02
331 1 0.00
332 1 0.00
333 3 0.00
335 2 0.00
336 5 0.01
338 1 0.00
339 10 0.01
340 3 0.00
341 37 0.04
342 17 0.02
343 48 0.05
344 4 0.00
345 5 0.01
347 5 0.01
348 1 0.00
350 3 0.00
351 1 0.00
352 1 0.00
354 17 0.02
355 37 0.04
356 2 0.00
357 2 0.00
359 1 0.00
360 2 0.00
361 2 0.00
363 2 0.00
364 4 0.00
365 3 0.00
366 2 0.00
367 14 0.02
368 90 0.10
369 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATCAGACGGA
CCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCGC
ATTATGCCTCTCCGACAGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:13761725 original size:157 final size:156
Alignment explanation
Indices: 13761511--13762113 Score: 509
Period size: 158 Copynumber: 3.8 Consensus size: 156
13761501 TGCGACAGCA
* ****
13761511 GGATCGACAGCACGCAGGGGGGACCAGGCCGATTTGTGACTTACGCATTCTGCCTCTCCAACCGA
1 GGATCG-CAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAACCGA
* * * * * *
13761576 CTGAGTGCCTGCATGCCCGTTTCATGGGTTGGCTTACGTATAGGGAGTTCATTCCATGTCTAAGC
65 CTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
*
13761641 CCCAG-CCGACTGAGGGTTGTGGTAGCG
130 ACCAGACCGACTGAGGGTTGTGG-AGCG
* * * ***
13761668 GGATCAGCAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAG
1 GGATC-GCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAACC-G
* * * * *
13761733 A-TGAGTGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA-CCCATGTGTAAG
64 ACTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * **
13761796 CTCCAGTCAGACCAAGGGTTGTGGCAGCG
129 CACCAGACCGACTGAGGGTTGTGG-AGCG
* * * * * * * *
13761825 GGACCGGCAGCACGTAGAGGGGGACCGGGACGATCCCCGGCTTGCGTATTATGCCTCT-CAGGCC
1 GGATC-GCAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCA-ACC
* * * * * *
13761889 -AGCTCAACGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCT
63 GA-CTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATT-CCATGTCT
* *
13761952 AAG-ATCAGACCAGACTGAGGGTTGTGGAGCA
126 AAGCACCAGACC-GACTGAGGGTTGTGGAGCG
** * * * *
13761983 GGATCGACAGCACGCAAGGGGGGACCGGGTTGATCCCCGACTTACGCATTTTGCCTTTTCGACCG
1 GGATCG-CAGCACGC-AGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAACCG
** * ** * * * *
13762048 GTTGAGCGCCCGCATGCTTGTTTCGTGGGTTAGCTTGGGCATATGGAGTTCATTCCGTGTCTAAG
64 ACTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
13762113 C
129 C
13762114 GTACGGAGTT
Statistics
Matches: 359, Mismatches: 71, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
156 16 0.04
157 130 0.36
158 188 0.52
159 22 0.06
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (156 bp):
GGATCGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAACCGAC
TGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
CCAGACCGACTGAGGGTTGTGGAGCG
Found at i:13761927 original size:158 final size:156
Alignment explanation
Indices: 13761593--13762113 Score: 512
Period size: 158 Copynumber: 3.3 Consensus size: 156
13761583 CCTGCATGCC
* * * * * * *
13761593 CGTTTCATGGGTTGGCTTACGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGACTGAGGGT
1 CGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCTCCAGCAGACTGAGGGT
* * * *
13761658 TGTGGTAGCGGGATCAGCAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCC
66 TGTGG-AGCGGGATCGGCAGCACGCAGAGGGGGACCGGGACGATCCCCGGCTTGCGCATTATGCC
* * *
13761722 TCTCTGGCCAGATGAGTGCCCACACGCC
130 TCTC-GGCCAGATGAGCGCCCGCACGCT
* * * **
13761750 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA-CCCATGTGTAAGCTCCAGTCAGACCAAGGG
1 CGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCTCCAG-CAGACTGAGGG
* * *
13761814 TTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACCGGGACGATCCCCGGCTTGCGTATTATGC
65 TTGTGG-AGCGGGATCGGCAGCACGCAGAGGGGGACCGGGACGATCCCCGGCTTGCGCATTATGC
* * *
13761879 CTCTCAGGCCAGCTCAACGCCCGCACGCT
129 CTCTC-GGCCAGATGAGCGCCCGCACGCT
* * *
13761908 CGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAT-CAGACCAGACTGAG
1 CGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCA-TCCCATGTCTAAGCTCCAG--CAGACTGAG
* * ** * * *
13761971 GGTTGTGGAGCAGGATCGACAGCACGCA-AGGGGGGACCGGGTTGATCCCCGACTTACGCATTTT
63 GGTTGTGGAGCGGGATCGGCAGCACGCAGA-GGGGGACCGGGACGATCCCCGGCTTGCGCATTAT
* * * * *
13762035 GCCTTTTCGACCGGTTGAGCGCCCGCATGCT
127 GCC-TCTCGGCCAGATGAGCGCCCGCACGCT
* * * * *
13762066 TGTTTCGTGGGTTAGCTTGGGCATATGGAGTTCATTCCGTGTCTAAGC
1 CGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGC
13762114 GTACGGAGTT
Statistics
Matches: 300, Mismatches: 56, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
156 15 0.05
157 68 0.23
158 188 0.63
159 25 0.08
160 4 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.23
Consensus pattern (156 bp):
CGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCTCCAGCAGACTGAGGGT
TGTGGAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGACGATCCCCGGCTTGCGCATTATGCCT
CTCGGCCAGATGAGCGCCCGCACGCT
Found at i:13763742 original size:26 final size:26
Alignment explanation
Indices: 13763692--13763744 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13763682 GTTGGCTTAG
* *
13763692 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13763718 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13763744 G
1 G
13763745 ATTTTTAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13764682 original size:21 final size:21
Alignment explanation
Indices: 13764653--13764692 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
13764643 TTGTGGCAAC
13764653 GGGACCGACAGCACGCAGAGG
1 GGGACCGACAGCACGCAGAGG
*
13764674 GGGATCGACAGCACGCAGA
1 GGGACCGACAGCACGCAGA
13764693 TCGGCTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.28, G:0.40, T:0.03
Consensus pattern (21 bp):
GGGACCGACAGCACGCAGAGG
Found at i:13764930 original size:26 final size:26
Alignment explanation
Indices: 13764894--13764946 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13764884 GTTGGCTTAG
*
13764894 GCATACGGAGTTCATTCCACA-TCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
13764920 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13764946 G
1 G
13764947 ATTTTGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13765643 original size:26 final size:26
Alignment explanation
Indices: 13765614--13765666 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13765604 GTTGACTTAG
13765614 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13765640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13765666 G
1 G
13765667 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13766314 original size:26 final size:26
Alignment explanation
Indices: 13766278--13766330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13766268 GTTGACTTAG
*
13766278 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13766304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13766330 G
1 G
13766331 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13766664 original size:158 final size:157
Alignment explanation
Indices: 13766304--13766804 Score: 393
Period size: 158 Copynumber: 3.2 Consensus size: 157
13766294 CCCAGTCTAA
** * *
13766304 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGATTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGACCGACA
* * * * * * * * *
13766369 GCACGCAAGGTGGATCGGGTCGATCTCCGACTTACGCATTCTGCCTTTCCGACCGGCTGAGCGCC
65 GCACACAAGGGGGATCGGCTCAATCCCCGACTGACGCATTATGCCTCTCCGACCGGCTCAGCGCC
* ** *
13766434 CGTACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTAATTTCGTGGGTTGACTTAG
* * ** * ** ** *
13766462 GCATAGGGAGTTCATTCCATGTCTAAG-CCCTAGCCGGATTGAGGGTTGTGGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGTGACAGCAGGACCGAC
* * * * *
13766526 AGCACACAGAGGGGGATCGAGCT-AATCCCCTACTGGCGCGTTATGCCTCTCCGGCTGGCTCAGC
64 AGCACACA-AGGGGGATCG-GCTCAATCCCCGACTGACGCATTATGCCTCTCCGACCGGCTCAGC
13766590 GCCCGCACGCTAATTT-GTGGGTTGACTTAG
127 GCCCGCACGCTAATTTCGTGGGTTGACTTAG
* * * * **
13766620 GCATACGGAGTTCATTCCTAGTCTATGATCGGATCGGACCGAGGGTTGCGGCAGCAAGTTCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGACCGACA
* * * * * * * * * * *
13766685 GCACGC-AGGAGGGACCGGGTCGATCCCTGGCTTG-CGCATTCTGCCTCTCCAATCGGTTGAGCG
65 GCACACAAGG-GGGATCGGCTCAATCCCCGAC-TGACGCATTATGCCTCTCCGACCGGCTCAGCG
* * * *
13766748 CCCGTACGCTTGA-TTCATGGGTTGGCTTAG
128 CCCGCACGC-TAATTTCGTGGGTTGACTTAG
13766778 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
13766805 CATAAGAAGT
Statistics
Matches: 265, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
156 5 0.02
157 49 0.18
158 154 0.58
159 55 0.21
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGACCGACAG
CACACAAGGGGGATCGGCTCAATCCCCGACTGACGCATTATGCCTCTCCGACCGGCTCAGCGCCC
GCACGCTAATTTCGTGGGTTGACTTAG
Found at i:13766732 original size:664 final size:664
Alignment explanation
Indices: 13765448--13766782 Score: 1989
Period size: 664 Copynumber: 2.0 Consensus size: 664
13765438 CTTCACATGA
*
13765448 AGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAATAAAGGCATTGGCATGGCAGAAATATG
1 AGGCATAGGGGACCATTGTATGAATTTACAAGCCATAATAAAGGCATTGGCATGGCAGAAATATG
13765513 AAGATGTGCTTGAACCCACCTACCACCCGTTCAATCCCCGGCTTGCTCCTGGCTCTCTGGTCGAC
66 AAGATGTGCTTGAACCCACCTACCACCCGTTCAATCCCCGGCTTGCTCCTGGCTCTCTGGTCGAC
* *
13765578 TGAGCACCCGTACGTTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
131 TGAGCACCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* *
13765643 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGATTGTGACAGCAGGATCGACAGTA
196 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGATTGTGACAGCAGGATCGACAGCA
* * * * *
13765708 CGCAAGATGGATCGGGTCGATCTCCGGCTTGCGCATTCTGCCTCTCCAACCGATTGAGTGCTCGT
261 CGCAAGATGGATCGGGTCGATCTCCGACTTACGCATTCTGCCTCTCCAACCGACTGAGCGCCCGT
*
13765773 ACGCCCGCTTCATGGGTTAGCTGAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATC
326 ACGCCCGCTTCATGGGTTAGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATC
* * * * *
13765838 GAGGGTTGTGGAAGCGGGACCGATAGCACACAGAGGGGGACTGGGCTGATCCCCGGCTTGTCCAT
391 GAGGGTTGTGGAAGCGGGACCGACAGCACACAGAGGGGGACTGAGCTAATCCCCGACTTGGCCAT
* * ** *
13765903 TATGCCTCTTCGGTGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTT
456 TATGCCTCTCCGGTGGCTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAGGCATACGGAGTT
* * *
13765968 CATTGCCAGTCTAAGATCAGATCGGACTAAGGGTTGCGGCACTAAGATCGGCAGCAAGCAGGGGG
521 CATTGCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCACTAAGATCGACAGCAAGCAGGAGG
* * ** * *
13766033 GACCGAGTCGATCCCCTGCTTGTGCATTTTGCCTCTCCGGTCAGCTGAGTGCCCGCACGCTCGTT
586 GACCGAGTCGATCCCCTGCTTGCGCATTCTGCCTCTCCAATCAGCTGAGCGCCCGCACGCTCGAT
*
13766098 TCGTGGGTTGGCTT
651 TCATGGGTTGGCTT
*
13766112 AGGCATAGGGGACCATTGTATGAATTTACAAGCCATAATAAAGGCATTGGCATGGTAGAAATATG
1 AGGCATAGGGGACCATTGTATGAATTTACAAGCCATAATAAAGGCATTGGCATGGCAGAAATATG
*
13766177 AAGATGTGCTTGAACCCACCTACCACCCGTTCAATCCCCGGCTTGCTCCTGGCTCTCTGGTTGAC
66 AAGATGTGCTTGAACCCACCTACCACCCGTTCAATCCCCGGCTTGCTCCTGGCTCTCTGGTCGAC
* * * * *
13766242 TGAGCGCCTGTACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
131 TGAGCACCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
*
13766307 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGATTGTGACAGCAGGATCGACAGCA
196 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGATTGTGACAGCAGGATCGACAGCA
* * * *
13766372 CGCAAGGTGGATCGGGTCGATCTCCGACTTACGCATTCTGCCTTTCCGACCGGCTGAGCGCCCGT
261 CGCAAGATGGATCGGGTCGATCTCCGACTTACGCATTCTGCCTCTCCAACCGACTGAGCGCCCGT
* * * * * * * *
13766437 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATT
326 ACGCCCGCTTCATGGGTTAGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATC
* *
13766502 GAGGGTTGTGGTAGCGGGACCGACAGCACACAGAGGGGGA-TCGAGCTAATCCCCTAC-TGGCGC
391 GAGGGTTGTGGAAGCGGGACCGACAGCACACAGAGGGGGACT-GAGCTAATCCCCGACTTGGC-C
* *
13766565 GTTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTAATTT-GTGGGTTGACTTAGGCATACGGA
454 ATTATGCCTCTCCGG-TGGCTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAGGCATACGGA
* * * * *
13766629 GTTCATT-CCTAGTCTATGATCGGATCGGACCGAGGGTTGCGGCAGC-AAGTTCGACAGCACGCA
518 GTTCATTGCC-AGTCTAAGATCAGATCGGACCAAGGGTTGCGGCA-CTAAGATCGACAGCAAGCA
* * * *
13766692 GGAGGGACCGGGTCGAT-CCCTGGCTTGCGCATTCTGCCTCTCCAATCGGTTGAGCGCCCGTACG
581 GGAGGGACCGAGTCGATCCCCT-GCTTGCGCATTCTGCCTCTCCAATCAGCTGAGCGCCCGCACG
*
13766756 CTTGATTCATGGGTTGGCTT
645 CTCGATTCATGGGTTGGCTT
13766776 AGGCATA
1 AGGCATA
13766783 CGGAGTTCAT
Statistics
Matches: 600, Mismatches: 65, Indels: 12
0.89 0.10 0.02
Matches are distributed among these distances:
663 10 0.02
664 567 0.94
665 23 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (664 bp):
AGGCATAGGGGACCATTGTATGAATTTACAAGCCATAATAAAGGCATTGGCATGGCAGAAATATG
AAGATGTGCTTGAACCCACCTACCACCCGTTCAATCCCCGGCTTGCTCCTGGCTCTCTGGTCGAC
TGAGCACCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGATTGTGACAGCAGGATCGACAGCA
CGCAAGATGGATCGGGTCGATCTCCGACTTACGCATTCTGCCTCTCCAACCGACTGAGCGCCCGT
ACGCCCGCTTCATGGGTTAGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATC
GAGGGTTGTGGAAGCGGGACCGACAGCACACAGAGGGGGACTGAGCTAATCCCCGACTTGGCCAT
TATGCCTCTCCGGTGGCTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAGGCATACGGAGTT
CATTGCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCACTAAGATCGACAGCAAGCAGGAGG
GACCGAGTCGATCCCCTGCTTGCGCATTCTGCCTCTCCAATCAGCTGAGCGCCCGCACGCTCGAT
TCATGGGTTGGCTT
Found at i:13767014 original size:196 final size:195
Alignment explanation
Indices: 13766670--13767197 Score: 700
Period size: 196 Copynumber: 2.7 Consensus size: 195
13766660 GAGGGTTGCG
* * * *
13766670 GCAGCAAGTTCGACAGCACGCAGGAGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCC
* * *
13766735 AATCGGTTGAGCGCCCGTACGCTTGA-TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 GATCGGCTGAGCGCCCGTACG-TTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * * *
13766799 TCTAAGCATAAGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGCAGGAC
130 TCTAAGCATAAGAAGTTCATT-CCAGTCTAAGATCGGACCGAACCAAGGGTTACAGCAGCAGGAC
13766864 CA
194 CA
* * * * *
13766866 GTAGCAGGATCGACAGCACGGAGGGGGGACCGGATCGATCCCTGACTTGTGGATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCC
* *
13766931 GGTCGGCTGAGCGCCCGCACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GATCGGCTGAGCGCCCGTACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * *
13766996 ATAAGCATATGGAGTTCATTCCAGTCTAAGATCGGACCGAACCAAGGGTTACGGTAGCAGGACCA
131 CTAAGCATAAGAAGTTCATTCCAGTCTAAGATCGGACCGAACCAAGGGTTACAGCAGCAGGACCA
* * *
13767061 GCAGCAGGATTGGCAGCACGCAGGGGTGGATCGGGTCGAT-CCTCGACTTGCGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGCAGGGG-GGACCGGGTCGATCCCT-GACTTGCGCATTCTGCCTCT
* * * * * * *
13767125 CCGACCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTTGGCATATGGAGTTCATTCCAT
64 CCGATCGGCTGAGCGCCCGTACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
13767190 GTCTAAGC
129 GTCTAAGC
13767198 CCCAGCCGGA
Statistics
Matches: 287, Mismatches: 42, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
195 66 0.23
196 221 0.77
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (195 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCC
GATCGGCTGAGCGCCCGTACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATAAGAAGTTCATTCCAGTCTAAGATCGGACCGAACCAAGGGTTACAGCAGCAGGACCA
Found at i:13768276 original size:26 final size:26
Alignment explanation
Indices: 13768246--13768298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13768236 GTTGACTTAG
*
13768246 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13768272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13768298 G
1 G
13768299 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13768856 original size:317 final size:318
Alignment explanation
Indices: 13768374--13769094 Score: 819
Period size: 317 Copynumber: 2.3 Consensus size: 318
13768364 CCGACTCGTG
* * *
13768374 CATTCTGCCTCTCC-AGCC-AGCTGAGCGTCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAG
1 CATTCTGCCTCTCCGA-CCGA-CTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* * * * *
13768437 GGAGTTCAATCCATATCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGACTGGCAGCACGT
64 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGC
* * * * *
13768502 AGAGGGGGATCGAGCTGATCCCCGACTTGTGCATTATGCCTCTTC-AGTCAGCTCAACGCCTAAA
129 AGAGAGGGACCGAGCTGATCCCCGACTTGTGCATTATGCCTCTTCGA-CCAGCTCAACACCCAAA
* *
13768566 CGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGACC-AGACC
193 CGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCGA-ACC
* * * *
13768630 GAGGGTTGC-AGCAGCAGGATCGACAGTACACAGGGG-GAACCAGGTCGATCCACGGCTTACA
257 GAAGGTTGCTAGCAGCAGGATCGACAGCACACAGGGGCG-ACCAGGCCGATCCACAGCTTACA
* * *
13768691 CATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCCCGTTTCGTGCGTTGGCTTAGGTATAGGG
1 CATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
* * * *
13768756 AGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAGGGTTGTGGTAGCGGGA-TCGATAGCATGCA
66 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACT-GACAGCACGCA
* * ** ** * * ***
13768820 GAGAGGGACCGGGTTGATCCTTGGTTTGTGCATTATGCCTCTTCGACCGGCTCAGCACCCGTGCG
130 GAGAGGGACCGAGCTGATCCCCGACTTGTGCATTATGCCTCTTCGACCAGCTCAACACCCAAACG
* **
13768885 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAA
195 CTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAA
* * * * * * *
13768950 GGTTGCTGGTAGTAGGATCGACAGCACGCAGGGGCGACCGGGCCGATCCTCAGCTTACG
260 GGTTGCTAGCAGCAGGATCGACAGCACACAGGGGCGACCAGGCCGATCCACAGCTTACA
** * * * * * *
13769009 CATTCTGCCTCTCCTGACCGGTTGACTGCCCGCATGCTCATTTTATGGGTTAGCTTAGGCAT-GC
1 CATTCTGCCTCTCC-GACCGACTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG-
13769073 GGAGTTCATTCCATGTCTAAGC
64 GGAGTTCATTCCATGTCTAAGC
13769095 ATACGGAGTT
Statistics
Matches: 337, Mismatches: 58, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
316 1 0.00
317 218 0.65
318 59 0.18
319 59 0.18
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (318 bp):
CATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAG
AGAGGGACCGAGCTGATCCCCGACTTGTGCATTATGCCTCTTCGACCAGCTCAACACCCAAACGC
TCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAAG
GTTGCTAGCAGCAGGATCGACAGCACACAGGGGCGACCAGGCCGATCCACAGCTTACA
Found at i:13768921 original size:159 final size:159
Alignment explanation
Indices: 13768328--13769094 Score: 450
Period size: 159 Copynumber: 4.8 Consensus size: 159
13768318 TGCCGTAATA
* * ** * * * * *
13768328 GGATCGATAGCATGTAG-GGGGGACCGGGCCGATCCTCCGACTCGTGCATTCTGCCTC-TCCAGC
1 GGATCGACAGCATGCAGAGGGGGACCGGGTTGATCC-ACGGCTTGTGCATTATGCCTCTTCGA-C
* * * * * * * *
13768391 CAGCTGAGCGTCC-ACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAAT-CCATATC
64 CGGCTCAGCGCCCGA-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTC
* *
13768454 TAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCG
127 TAAGCCTCAGCCAGACCGAGGGTTGTGGCAGCG
* * * * * * * * *
13768487 GGA-CTGGCAGCACGTAGAGGGGGATCGAGCTGATCCCCGACTTGTGCATTATGCCTCTTC-AGT
1 GGATC-GACAGCATGCAGAGGGGGACCGGGTTGATCCACGGCTTGTGCATTATGCCTCTTCGA-C
* * ** * * **
13768550 CAGCTCAACGCCTAAACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTA
64 CGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** *
13768615 AG-ATCGGACCAGACCGAGGGTTGCAGCAGCA
129 AGCCTCAG-CCAGACCGAGGGTTGTGGCAGCG
* * * * *** * *
13768646 GGATCGACAG--TACACAGGGGGAACCAGGTCGATCCACGGCTTACACATTCTGCCTCTCCGACC
1 GGATCGACAGCATGCAGAGGGGG-ACCGGGTTGATCCACGGCTTGTGCATTATGCCTCTTCGACC
* * * * * * * * * *
13768709 GACTGAGTGCCCGCACGCCCGTTTCGTGCGTTGGCTTAGGTATAGGGAGTTCATT-CCATGTCTA
65 GGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
*
13768773 AGCCTCAGCCAGACCGAGGGTTGTGGTAGCG
129 AGCCTCAGCCAGACCGAGGGTTGTGGCAGCG
* * ** *
13768804 GGATCGATAGCATGCAGAGAGGGACCGGGTTGATCCTTGGTTTGTGCATTATGCCTCTTCGACCG
1 GGATCGACAGCATGCAGAGGGGGACCGGGTTGATCCACGGCTTGTGCATTATGCCTCTTCGACCG
* **
13768869 GCTCAGCACCCGTGCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 GCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * **
13768934 -ATCGAACC-GAACCGAAGGTTGCTGGTAGTA
131 CCTC-AGCCAG-ACCGAGGGTTG-TGGCAGCG
* * ** * * ** * *
13768964 GGATCGACAGCACGCAG-GGGCGACCGGGCCGATCCTCAGCTTACGCATTCTGCCTCTCCTGACC
1 GGATCGACAGCATGCAGAGGGGGACCGGGTTGATCCACGGCTTGTGCATTATGCCTCTTC-GACC
* * * * * * *
13769028 GGTTGA-CTGCCCGCATGCTCATTTTATGGGTT-AGCTTAGGCATGCGGAGTTCATT-CCATGTC
65 GGCTCAGC-GCCCGAACGCTCGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTC
13769090 TAAGC
127 TAAGC
13769095 ATACGGAGTT
Statistics
Matches: 464, Mismatches: 122, Indels: 42
0.74 0.19 0.07
Matches are distributed among these distances:
157 10 0.02
158 106 0.23
159 241 0.52
160 107 0.23
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GGATCGACAGCATGCAGAGGGGGACCGGGTTGATCCACGGCTTGTGCATTATGCCTCTTCGACCG
GCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CCTCAGCCAGACCGAGGGTTGTGGCAGCG
Found at i:13769093 original size:160 final size:158
Alignment explanation
Indices: 13768565--13769093 Score: 498
Period size: 159 Copynumber: 3.3 Consensus size: 158
13768555 CAACGCCTAA
* ** *
13768565 ACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC
* * * * * * *
13768630 GAGGGTTGC-AGCAGCAGGATCGACAGTACACAGGGGGAACCAGGTCGATCCACGGCTTACACAT
66 GAGGGTTGCTGGTAGCAGGATCGACAGCACGCAGGGGG-ACCGGGTCGATCCTCGGCTTACGCAT
* *
13768694 TCTGCCTCTCCGACCGACTGAGTGCCCGC
130 TCTGCCTCTCCGACCGGCTGACTGCCCGC
* * * * * * * * *
13768723 ACGCCCGTTTCGTGCGTTGGCTTAGGTATAGGGAGTTCATT-CCATGTCTAAGCCTC-AGCCAGA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGAACCAGA
* * * * * * **
13768786 CCGAGGGTTG-TGGTAGCGGGATCGATAGCATGCAGAGAGGGACCGGGTTGATCCTTGGTTTGTG
64 CCGAGGGTTGCTGGTAGCAGGATCGACAGCACGCAG-G-GGGACCGGGTCGATCCTCGGCTTACG
* * * * *
13768850 CATTATGCCTCTTCGACCGGCTCAGC-ACCCGT
127 CATTCTGCCTCTCCGACCGGCTGA-CTGCCCGC
* *
13768882 GCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAAC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-AC
* * * *
13768946 CGAAGGTTGCTGGTAGTAGGATCGACAGCACGCAGGGGCGACCGGGCCGATCCTCAGCTTACGCA
65 CGAGGGTTGCTGGTAGCAGGATCGACAGCACGCAGGGG-GACCGGGTCGATCCTCGGCTTACGCA
*
13769011 TTCTGCCTCTCCTGACCGGTTGACTGCCCGC
129 TTCTGCCTCTCC-GACCGGCTGACTGCCCGC
* * *
13769042 ATGCTCATTTTATGGGTT-AGCTTAGGCATGCGGAGTTCATT-CCATGTCTAAG
1 ACGCTCATTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
13769094 CATACGGAGT
Statistics
Matches: 291, Mismatches: 65, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 77 0.26
159 131 0.45
160 80 0.27
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC
GAGGGTTGCTGGTAGCAGGATCGACAGCACGCAGGGGGACCGGGTCGATCCTCGGCTTACGCATT
CTGCCTCTCCGACCGGCTGACTGCCCGC
Found at i:13769103 original size:26 final size:26
Alignment explanation
Indices: 13769067--13769119 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13769057 GTTAGCTTAG
*
13769067 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13769093 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13769119 G
1 G
13769120 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13775617 original size:185 final size:184
Alignment explanation
Indices: 13775272--13775633 Score: 423
Period size: 185 Copynumber: 2.0 Consensus size: 184
13775262 AGGCATACGA
* *** * * *
13775272 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATCAACAGCATGCAA
1 AGTTCATTCCCAATCTAAGATCAAACCGAACCGAGGGTTGCGGCAGCAGGATCAACAGCATGCAA
*
13775337 GGGGGACCAGACCGATCCTCGACTTACGCATTCTACCTCTCTGGTGGGCTGAGCAGCCCCACGCT
66 GGGGGACCAGACCGATCCCCGACTTACGCATTCTACCTCTCTGGTGGGCTGAGCAGCCCCACGCT
**
13775402 CGTCTCATGGGTTGGCTTAGCCAAACGGAGTTCATTCCATGTCTAAGGATACAG
131 CGTCTCATGCATTGGCTTAGCCAAACGGAGTTCATTCCATGTCTAAGGATACAG
* *
13775456 AGTTCATTCCCAATCTAAGATCAAACCGAATCGAGGGTTGCGGCAGCAGGATCAGCAGC-TCGCA
1 AGTTCATTCCCAATCTAAGATCAAACCGAACCGAGGGTTGCGGCAGCAGGATCAACAGCAT-GCA
* *
13775520 GGGGGAGACC-GAGCCGATCCCC-AGCTTGCGCATTCTACCTCT-TCGGCT-GGCTGAGC-GCCC
65 AGGGG-GACCAGA-CCGATCCCCGA-CTTACGCATTCTACCTCTCT-GG-TGGGCTGAGCAGCCC
* * * * * *
13775580 GTACGTTCGAT-TCTTTCATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
125 -CACGCTCG-TCTCATGCATTGGCTTAGCCAAACGGAGTTCATTCCATGTCTAAG
13775634 CCCCCGTCAA
Statistics
Matches: 150, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
183 1 0.01
184 65 0.43
185 82 0.55
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (184 bp):
AGTTCATTCCCAATCTAAGATCAAACCGAACCGAGGGTTGCGGCAGCAGGATCAACAGCATGCAA
GGGGGACCAGACCGATCCCCGACTTACGCATTCTACCTCTCTGGTGGGCTGAGCAGCCCCACGCT
CGTCTCATGCATTGGCTTAGCCAAACGGAGTTCATTCCATGTCTAAGGATACAG
Found at i:13776177 original size:160 final size:159
Alignment explanation
Indices: 13775817--13776179 Score: 392
Period size: 160 Copynumber: 2.3 Consensus size: 159
13775807 CCCAGTCTAT
* * *
13775817 GCATACGGAGTTCATTCCCAGTTTAAGATTAGATCAGACCGA-GGGTTTCGACAGTAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGGTTTCGACAGTAGGATCGAC
* * * * * * * *
13775881 ATCACGCAAGGGGGACCGGGCCGATCCTTGACTTGCGCATTCTACCTCTTTGGCCGGCTAAGCTC
66 AGCACCCAAGGGGGACCGAGCCGATCCCTGACTTGCACATTATACCTCTCTGGCCGGCTAAGCAC
* *
13775946 CCGCATGCTCGTTTCATGGGTTGGCTTAG
131 CCGAATGCTCGTTTCATGGGTTGACTTAG
* *** * * *
13775975 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGGTTGT-GGCAGTGGGATC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGATCAGACCGAGGGGTT-TCGACAGTAGGATC
* ** * * *
13776037 GACAGCACACCGAGGGGGACCGAGTTGATCCCTGGCTTGCACATTATGCCTCTCTGGCCGGCTCA
63 GACAGCAC-CCAAGGGGGACCGAGCCGATCCCTGACTTGCACATTATACCTCTCTGGCCGGCTAA
* *
13776102 GCACCTGAATGCTCGTTTCGTGGGTTGACTTAG
127 GCACCCGAATGCTCGTTTCATGGGTTGACTTAG
* *
13776135 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGG
13776180 TTGCGGTAGC
Statistics
Matches: 163, Mismatches: 35, Indels: 12
0.78 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 29 0.18
159 23 0.14
160 105 0.64
161 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGGTTTCGACAGTAGGATCGAC
AGCACCCAAGGGGGACCGAGCCGATCCCTGACTTGCACATTATACCTCTCTGGCCGGCTAAGCAC
CCGAATGCTCGTTTCATGGGTTGACTTAG
Found at i:13776525 original size:26 final size:26
Alignment explanation
Indices: 13776489--13776541 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13776479 GTTGGATTAG
*
13776489 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCAATCTCA-GTCTAA
13776515 GCATACGGAGTTCAATCTCAGTCTAA
1 GCATACGGAGTTCAATCTCAGTCTAA
13776541 G
1 G
13776542 AGTTGAGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCTCAGTCTAA
Found at i:13778393 original size:26 final size:26
Alignment explanation
Indices: 13778357--13778409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13778347 GTTGGCTTAG
*
13778357 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13778383 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13778409 G
1 G
13778410 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13779114 original size:26 final size:26
Alignment explanation
Indices: 13779078--13779130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13779068 GTTGACTTAG
13779078 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13779104 GCATATGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13779130 G
1 G
13779131 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13779729 original size:345 final size:350
Alignment explanation
Indices: 13779035--13779729 Score: 786
Period size: 345 Copynumber: 2.0 Consensus size: 350
13779025 CTACCTCTCT
* * *
13779035 GGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGT
1 GGTCGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGT
* * * * * *
13779100 CTAAGCATATGGAGTTGATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGACAGCAGGATC
66 CTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGACAGCAGGATC
* * * * * *
13779165 GATAACACAGAGAAAAGACCGGGTCGGTCTTCAGCTTGCGCATTTTGCCTCTCCGATCGGCTGAG
131 GATAACACAGAG-AAAGACCAGGCCGGTCCTCAGCTTGCACATTCTACCTCTCC-A-CGGC---G
*
13779230 CGCCCGGACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
190 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
13779295 TCAGACCGAGGCTTGTGGCAGCGGGATCGACAGCACGCAAAGGGGGATCGAACTGATCCCTGACT
255 ACAGACCGAGGCTTGTGGCAGCAGGATCGACAGCACGCAAAGGGGGATCGAACTGATCCCAGACT
*
13779360 TGCACATTACGCCTCTTCGATCGGCCTCTAC
320 TGCACATTACGCCTCTCCGATCGGCCTCTAC
*
13779391 GGTCGGCTGAGCGCCCGCACGCTCA-TTCTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
1 GGTCGGCTGAGCGCCCGCACGCTCATTTC-GTGAGTTGACTTAGGCATACAGAGTTCATCCCCAG
* * * ** * *
13779455 TCTAAGGATATGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGTAGGAT
65 TCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGACAGCAGGAT
* ** *
13779520 CGATAGCATGCAG-G-GGGGCCAGGCCGGTCCTCAGCTTGCACATTCTACCTCT-C-C-GC-C-C
130 CGATAACA--CAGAGAAAGACCAGGCCGGTCCTCAGCTTGCACATTCTACCTCTCCACGGCGCGC
*
13779578 CCGCACGCCCGTTTCGTGGGTTGGCATT-GGCATAGGGAGTTCATTCCATGTCTAAGCCCTA-AC
193 CCGCACGCCCGTTTCGTGGGTTGGC-TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC
* * * * * * **
13779641 AGGATCGAGGGTTGTGGTAGCAGGA-CTGGCAGCGCGCAGAGGGGGA-CTGGGCTGATCCCCAG-
257 A-GACCGAGGCTTGTGGCAGCAGGATC-GACAGCACGCAAAGGGGGATC-GAACTGAT-CCCAGA
* *
13779703 CTTGCGCATTATGCCTCTCCGATCGGC
318 CTTGCACATTACGCCTCTCCGATCGGC
13779730 TCAGCACCGC
Statistics
Matches: 288, Mismatches: 43, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
344 4 0.01
345 122 0.42
346 7 0.02
350 2 0.01
351 1 0.00
354 1 0.00
355 32 0.11
356 115 0.40
357 1 0.00
358 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (350 bp):
GGTCGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGT
CTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGACAGCAGGATC
GATAACACAGAGAAAGACCAGGCCGGTCCTCAGCTTGCACATTCTACCTCTCCACGGCGCGCCCG
CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGAC
CGAGGCTTGTGGCAGCAGGATCGACAGCACGCAAAGGGGGATCGAACTGATCCCAGACTTGCACA
TTACGCCTCTCCGATCGGCCTCTAC
Found at i:13779810 original size:158 final size:159
Alignment explanation
Indices: 13779578--13779950 Score: 400
Period size: 158 Copynumber: 2.4 Consensus size: 159
13779568 CTCTCCGCCC
* * * * *
13779578 CCGCACGCCCGTTTCGTGGGTTGGCATT-GGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACA
1 CCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCACGTCTAAGACCTAACA
* * * * *
13779642 GGATCGAGGGTTGTGGTAGCAGGACTGGCAGCGCGCAGAGGGGGA-CTGGGCTGATCCCCAGCTT
65 GGATCGAGGGTTGTGGTAGCAGGACTGACAGCACGCA-AGGGGGACCAGGTC-GATCCCCAGCAT
*
13779706 GCGCATTATGCCTCT-CCGATCGGCTCAGC-A
128 GCGCATTATGCCACTCCCGATCGGCTCAGCGA
* * *
13779736 CCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATC-AGAC
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAC-GTCTAAGACCTA-AC
* * * * *
13779799 CGGATTGAGGGTTGTGGTAGCAGGATTGACAGCACGCAAGGGGGTCCAGGTCGATCCCCGGCATG
64 AGGATCGAGGGTTGTGGTAGCAGGACTGACAGCACGCAAGGGGGACCAGGTCGATCCCCAGCATG
* * * * * *
13779864 CGTATTCTGCCACTCCCGGTCGGTTGAGCGC
129 CGCATTATGCCACTCCCGATCGGCTCAGCGA
* *
13779895 CCGCACGCTCGTTTCGTGGGTT-AGCTTAGGCATATGGAGTTCGTTCCACGTCTAAG
1 CCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCACGTCTAAG
13779951 CATGCGGAGT
Statistics
Matches: 178, Mismatches: 29, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
157 31 0.17
158 98 0.55
159 48 0.27
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAGACCTAACAG
GATCGAGGGTTGTGGTAGCAGGACTGACAGCACGCAAGGGGGACCAGGTCGATCCCCAGCATGCG
CATTATGCCACTCCCGATCGGCTCAGCGA
Found at i:13780323 original size:26 final size:26
Alignment explanation
Indices: 13780294--13780343 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13780284 GACTTAGGCA
13780294 TATGGAGTTAATCCCCAGTCTAAGCC
1 TATGGAGTTAATCCCCAGTCTAAGCC
* * *
13780320 TATGTAGTTCATTCCCAGTCTAAG
1 TATGGAGTTAATCCCCAGTCTAAG
13780344 ATCGAATCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TATGGAGTTAATCCCCAGTCTAAGCC
Found at i:13780505 original size:26 final size:26
Alignment explanation
Indices: 13780475--13780527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13780465 GTTGGCTTAG
*
13780475 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13780501 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13780527 G
1 G
13780528 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13781725 original size:26 final size:26
Alignment explanation
Indices: 13781696--13781748 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13781686 GTTGGCTTAG
13781696 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13781722 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13781748 G
1 G
13781749 ATCGGATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13782113 original size:26 final size:26
Alignment explanation
Indices: 13782076--13782125 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
13782066 GTTGACTTAG
*
13782076 GCATACGAAGTTTATCCCCAGTCTGA
1 GCATACGAAGTTCATCCCCAGTCTGA
*
13782102 GCATAC-AGAGTTCATTCCCAGTCT
1 GCATACGA-AGTTCATCCCCAGTCT
13782126 AAGATCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTGA
Found at i:13782983 original size:25 final size:26
Alignment explanation
Indices: 13782955--13783006 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
13782945 GTTAACTTAG
13782955 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13782980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13783006 G
1 G
13783007 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13783315 original size:878 final size:877
Alignment explanation
Indices: 13781159--13783479 Score: 2482
Period size: 879 Copynumber: 2.6 Consensus size: 877
13781149 TCTCTGGTCA
* * *
13781159 GCTGGGCGCCCGCACGTTCGTTTCGTGGTTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
* * * * *
13781224 TATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGATAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCA-AACGAGGGTTGCGACAGTAAGATCGATAG
* * *
13781289 CACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
130 CACGC-AGGGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
*
13781354 GCACGCCCATTTTGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGG
194 GCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-GG
* * * *
13781419 CT-GAGGGTTGTGGCAACGGGACCGACAGCACACAGAAGAGGACTAGGTCGAT-CTCGATTTACG
258 CTCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACTGGGTCGATCCTCGA-TTGCG
* * * ** * * *
13781482 TATTATGCCTCTCCGATCAGTTCAATGCCCATACGCTCATTTCGTGGGTTGACTTAGGCTTACGA
322 CATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG-
* * ** * * * * * *
13781547 AAG-TCATTTCGAGTCTTTGATCGGAGCGAACCGAGGGTTGTGGCAGCATGATCGATAGCACGCA
386 AAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGC-
** * * * * * * * * * *
13781611 GGGGGGATTGGGCCGATCCCAGGCTTGCACATTCTGCC-TCTCCGACCAGCTAAGC-ACCCGTAC
450 GGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTTTTCAG-TCAGCTGA-CTGCCTGCAC
* * *
13781674 GCTC-ATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
513 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACAGAGTTCATT
* * * * * *
13781738 CCTAGTCTAAGATCGGATCACACCGAGGGCTACGGCAGCAGGACCAACAATAGGATCGACAGCAC
578 CCCAGTCTAAGATCGAACCACACCAAGGACTACGGCAGCAGGACCAACAACAGGATCGACAGCAC
* * * * * *
13781803 GCAGGGAGGATCGGGTCGGTCCCTAACTTGTGCATTCTGCCTCTCCGACTGACTGGGTGCCCGCA
643 GCAGGGAGGACCAGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCA
* ** * *
13781868 CGCTTGTTTTGTGGGTTGGCTTAGGCATACTAATTTCATTCCATGTCTAAGCCCCAGCCGGACCG
708 CGCTCGTTTCATGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
* * * *
13781933 AGGGTTATGGCAGTAGGACCGGCAGCTGGATCGACAGCACGTAGAGGGGGACCAGGCTGATCCCT
773 AGGGTTATGGCAGCAGGACCGGCAGCTGGATCGACAGCACGAAAAGGGGGACCAGGCTGATCCCC
* * * * * * *
13781998 GGCTTGCGCATTATGCCTCTTCGGTCGGCCTCTTCGGCCG
838 GACTTACGCATTATACCTCCTCGGCCGGCCTCTCCGACCG
* * * * * * * *
13782038 GCTGAGCACTCGTACCCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTTATCCCCAGTCTGAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
* * * ** * * ** *
13782103 CATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACTGAGGGTTATGTCAGGATCATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAAC-GAGGGTTGCGACAGTAAGATCGATAG
* * * * *
13782168 CGCGCAGGGGGGACCGGGCCGATCCCCGACTTACGT-ATTCTACCTCCCCGGTAGGCT--GCGCT
130 CACGCA-GGGGGACCGGGCCGATCCCCGACTTGC-TCATTCTGCCTCTCCGGTCGGCTGAGCGC-
* * *
13782230 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
192 CCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * * * * * *
13782295 GATCGAGGGTTGCGGTAGTGGGACTGACAGCACGCAG-AGGGGAGCCGAG-CTGATCCCTGGCTT
257 GCTCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGA-CTGGGTC-GAT-CCTCGATT
* * *
13782358 GCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATA
319 GCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
13782423 C-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTACAGTAGCAGGATCGACAGCAC
384 CGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCAC
** * *
13782487 GCGGGAGGGACCGGGCCAATCCCCGGCTTATGCATTTTGCCTTTTCAGTCAGCTGACTGCTTGCA
448 GCGGG-GGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTTTTCAGTCAGCTGACTGCCTGCA
13782552 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACAGAGTTCAT
512 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACAGAGTTCAT
** * * * * * ** * **
13782617 TCCCAGTC-AAGATCGAACCGGATCAAGGATTGCGGTAGTAGGACCAGTAGCAGGATCGGTAGCA
577 TCCCAGTCTAAGATCGAACCACACCAAGGACTACGGCAGCAGGACCAACAACAGGATCGACAGCA
* * ** * * *
13782681 CGCAGGGGGGACCAGGTTGATCCCCGGCTTGCGCATTCTGTCTCTCCGTCTGGCTGAGTGCCCGC
642 CGCAGGGAGGACCAGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGACTGACTGAGTGCCCGC
* *
13782746 ACGCTCGTTTCATGGGTTGGCTTAGGTATAC-AGAGTTCATTCCATGTCTAAGCTCCAGCCAGAC
707 ACGCTCGTTTCATGGGTTGGCTTAGGCATACTA-AGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* * * * ** **
13782810 TGAGGGTTGTGGCAGCAGGATCGGTAG-TGGGAAT-GGTAGCACGAAAAGGGGGACTGGGCTGAT
771 CGAGGGTTATGGCAGCAGGACCGGCAGCT-GG-ATCGACAGCACGAAAAGGGGGACCAGGCTGAT
13782873 CCCCGACTTACGCATTATACCTCC-CTGGCCGGCCTCTCCGACCG
834 CCCCGACTTACGCATTATACCTCCTC-GGCCGGCCTCTCCGACCG
* * * * *
13782917 GCTGAGCGCCCACACGCTCGTTCCATGGGTTAACTTAGGCATACGGAGTTCAT-CCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
* * * *
13782981 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAAACGAGGGTTGCGGCAATAAGATTGGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AAACGAGGGTTGCGACAGTAAGATCGATAG
* * * * * *
13783046 AACGCAGGGAGACCGGGCCGATCCTCGGCTTGCTCATTCTGCCTCTCCGATCGGCTGAGCGCCCA
130 CACGCAGGGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
* * * *
13783111 CATGCCTATTTTTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGCCT
195 CACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGCT
* * *
13783176 CGAGGGTTGTGGCAGCGGGACCGACAGCACATAGAAGGGGATTGGGTCAATCCTCGATTGGCGCA
260 CGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACTGGGTCGATCCTCGATT-GCGCA
* * * * * *
13783241 TTATGCCTCTTCAATTGGCTCAGCGCCCGCATGCTCGTTCCGTGGGTTGACTTAGGCATACGAAG
324 TTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAG
* * * * * * * * *
13783306 TTTATTCCCAGTCTAACATTGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACAGTATGTAGGT
389 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACG-CGGG
* * * * * * * *
13783371 GGGACCGGGCCAATCCCCAGCTTGCGCATTCTACCTCTTCGGTCGGTTGAGTGCCTGCATGCTCG
453 GGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTTTTCAGTCAGCTGACTGCCTGCACGCTCG
* **
13783436 TTTCGTGGGATGAATTAGGCATACGGAGTTCATTCCATGTCTAA
518 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13783480 ACCCTAGTCG
Statistics
Matches: 1166, Mismatches: 248, Indels: 57
0.79 0.17 0.04
Matches are distributed among these distances:
876 1 0.00
877 60 0.05
878 457 0.39
879 576 0.49
880 72 0.06
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (877 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACGAGGGTTGCGACAGTAAGATCGATAGC
ACGCAGGGGGACCGGGCCGATCCCCGACTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
ACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGCTC
GAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACTGGGTCGATCCTCGATTGCGCATT
ATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCGGGGGG
ACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTTTTCAGTCAGCTGACTGCCTGCACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACAGAGTTCATTCCCAGTCT
AAGATCGAACCACACCAAGGACTACGGCAGCAGGACCAACAACAGGATCGACAGCACGCAGGGAG
GACCAGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCTCGTT
TCATGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTAT
GGCAGCAGGACCGGCAGCTGGATCGACAGCACGAAAAGGGGGACCAGGCTGATCCCCGACTTACG
CATTATACCTCCTCGGCCGGCCTCTCCGACCG
Found at i:13783675 original size:26 final size:26
Alignment explanation
Indices: 13783625--13783677 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13783615 GTTGGCTTAG
*
13783625 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13783651 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13783677 G
1 G
13783678 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13784191 original size:25 final size:26
Alignment explanation
Indices: 13784155--13784206 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13784145 GTTGACTTAG
13784155 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
13784180 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13784206 G
1 G
13784207 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13785879 original size:26 final size:26
Alignment explanation
Indices: 13785839--13785894 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13785829 TGGGTTGACT
13785839 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* *
13785865 TAAGCATAC-AGAGTTCATTCCTAGTC
1 TAAGCATACGA-AGTTCATCCCCAGTC
13785891 TAAG
1 TAAG
13785895 ATCGAACCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:13787361 original size:26 final size:26
Alignment explanation
Indices: 13787332--13787384 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13787322 GTTGGCTTAG
13787332 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13787358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13787384 G
1 G
13787385 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13788046 original size:157 final size:157
Alignment explanation
Indices: 13787821--13788380 Score: 551
Period size: 157 Copynumber: 3.6 Consensus size: 157
13787811 CGATTTGTGA
* * * * *
13787821 CTTGCGCATTCTGCCTCT-CGACCGGCTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTACGT
1 CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGC
* *
13787885 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGACTGAGGGTTGTGGCAGCTGGATCGACAGC
66 ATAGGGAGTTCATTCCATGTCTAAGCACCAGACCGACTGAGGGTTGCGGCAGC-GGATCGACAGC
* *
13787949 ACGCAGGGGGGATCGGGCCGATCCCCGG
130 ACGCAGGGGGGACCGGGACGATCCCCGG
* * *
13787977 CTTGCGCATTCTGCCTCTCCGGCCAGATGAGTGCCCACATGCCCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGC
* * * * * * *
13788042 ATAGGGAGTTCA-TCCATGTGTAAGCTCCAGTCGGA-TCGAGGGCTACGGCAGCGGACCGACAGC
66 ATAGGGAGTTCATTCCATGTCTAAGCACCAGACCGACT-GAGGGTTGCGGCAGCGGATCGACAGC
* *
13788105 ACGTAGAGGGGGACCGGGATGAT-CCCGG
130 ACGCAG-GGGGGACCGGGACGATCCCCGG
* * * * * * * *
13788133 CTTGCGTATTATGCCTCTCCGGCCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGC
** *** * * *
13788198 ATACAGAGTTCATTCCCA-GTCTAAG-ATTGGACCAGACTGAGGGTTGCAG-AGCAGGATCAATA
66 ATAGGGAGTTCATT-CCATGTCTAAGCACCAGACC-GACTGAGGGTTGCGGCAGC-GGATCGACA
* * * *
13788260 GTACGCAGGGGGGACCGGGTCGATCCCTGA
128 GCACGCAGGGGGGACCGGGACGATCCCCGG
* * * * * * * *
13788290 CTTACGCATTCTACCTTTCTGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGC
* *
13788355 ATATGGAGTTCATTCCGTGTCTAAGC
66 ATAGGGAGTTCATTCCATGTCTAAGC
13788381 GTACGGAGTT
Statistics
Matches: 328, Mismatches: 64, Indels: 22
0.79 0.15 0.05
Matches are distributed among these distances:
156 140 0.43
157 184 0.56
158 4 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCACCAGACCGACTGAGGGTTGCGGCAGCGGATCGACAGCA
CGCAGGGGGGACCGGGACGATCCCCGG
Found at i:13788539 original size:185 final size:182
Alignment explanation
Indices: 13788203--13788564 Score: 458
Period size: 185 Copynumber: 2.0 Consensus size: 182
13788193 TAGGCATACA
* * * *
13788203 GAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGAGCAGGATCAATAGTACGCAG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGAACAGGATCAATAGCACACAG
* * * ** * *
13788268 GGGGGACCGGGTCGATCCCTGACTTACGCATTCTACCTTTCTGGTCGGCTGAGCGCCCGCATGCT
66 GGGGGACCGGCTCGATCACTGACTTACGCATTCTACCTCTCCAGTCGGCTAAGCGCCCGCACGCT
* ** * *
13788333 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCGTGTCTAAGCGTACG
131 CGTTTCATGGGTTAACTTAGGCATA-CGAGTTCATTCCATGTCTAAGCGTACG
* *
13788386 GAGTTCATTCCCAGTCTAAGATCGTG-CCAGACTGAGGGTTGCGGCAACAGGATCGATAGCACAC
1 GAGTTCATTCCCAGTCTAAGATCG-GACCAGACTGAGGGTTGCAG-AACAGGATCAATAGCACAC
* * * * *
13788450 AGTGGGGGACCAGGCT-GATCACTGGCTTGCGTATTCTGCCTCTCCAGTCGGCTAAGTGCCCGCA
64 AG-GGGGGACC-GGCTCGATCACTGACTTACGCATTCTACCTCTCCAGTCGGCTAAGCGCCCGCA
13788514 CGCTCGTTTCATGGGTTAACTTAGGCATACGAGTTCATTCCATGTCTAAGC
127 CGCTCGTTTCATGGGTTAACTTAGGCATACGAGTTCATTCCATGTCTAAGC
13788565 CCCAGTCAGA
Statistics
Matches: 152, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
183 40 0.26
184 38 0.25
185 71 0.47
186 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (182 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGAACAGGATCAATAGCACACAG
GGGGGACCGGCTCGATCACTGACTTACGCATTCTACCTCTCCAGTCGGCTAAGCGCCCGCACGCT
CGTTTCATGGGTTAACTTAGGCATACGAGTTCATTCCATGTCTAAGCGTACG
Found at i:13789524 original size:26 final size:26
Alignment explanation
Indices: 13789488--13789543 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
13789478 TGGGTTGACT
13789488 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
13789514 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
13789540 TAAG
1 TAAG
13789544 ATTGAACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:13789720 original size:298 final size:297
Alignment explanation
Indices: 13789179--13789750 Score: 788
Period size: 298 Copynumber: 1.9 Consensus size: 297
13789169 TGCTCATTTC
* *
13789179 GTGGGTTGACTTAGGCACACGGAGTTCATCCCTAGTCTAAGCATACAGAGTCCATTCCCAGTCTA
1 GTGGGTTGACTTAAGCACACGGAGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTA
* * * *
13789244 AGATCAAACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGTGGACCAGGTCGATC
66 AGATCAAACCGGACCGAGGGTTGCGACAGCAGGATAGATAGCACGCAGGGGGGACCAGGCCGATC
* * * * *
13789309 CTTAGCTTACGCATTCTACCTCTCCGATCGGCTGAGTACCCGCACACCCGTTTTGTGGGTTGGCT
131 CTTAGCTTACACAATCTACCTCTCCAACCGGCTGAGCACCCGCACACCCGTTTTGTGGGTTGGCT
* * * * *
13789374 TAGGTATAGGTAGTTCATTCCACGTCTAAGCCCCAATCGAATTGAGGGTTGTGGTAGTGGGACCG
196 GAGGTATAGGGAGTTCATTCCACGTCTAAGCCCCAATCGAACTGAGGGTTGTGGCAGCGGGACCG
13789439 ACAGCACGTAGAGGGTTGAGCACCCGCACCCTCGTTTT
261 -CAGCACGTAGAGGGTTGAGCACCCGCACCCTCGTTTT
* * *
13789477 GTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
1 GTGGGTTGACTTAAGCACACGGAGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTA
** * * * * * *
13789542 AGATTGAACTGGACCGAGGGTTGTGGCAGCAGGATAGGTAGCACGCAGGGGGGATCGGGCCGATC
66 AGATCAAACCGGACCGAGGGTTGCGACAGCAGGATAGATAGCACGCAGGGGGGACCAGGCCGATC
* * *
13789607 CTTGGCTTGCACAATCTGCCTCTCCAACCGGCTGAGCACCCGCACACCC-TTTTCGTGGGTTGGC
131 CTTAGCTTACACAATCTACCTCTCCAACCGGCTGAGCACCCGCACACCCGTTTT-GTGGGTTGGC
* * * *
13789671 TGAGTTATAGGGAGTTCATTCCACGTCTAAGCCTC-AGCTGGACTGAGGGTTGTGGCAGCGGGAC
195 TGAGGTATAGGGAGTTCATTCCACGTCTAAGCCCCAATC-GAACTGAGGGTTGTGGCAGCGGGAC
*
13789735 CGGAGCACGTAGAGGG
259 CGCAGCACGTAGAGGG
13789751 AGACCAGGCC
Statistics
Matches: 237, Mismatches: 35, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
297 19 0.08
298 218 0.92
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (297 bp):
GTGGGTTGACTTAAGCACACGGAGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTA
AGATCAAACCGGACCGAGGGTTGCGACAGCAGGATAGATAGCACGCAGGGGGGACCAGGCCGATC
CTTAGCTTACACAATCTACCTCTCCAACCGGCTGAGCACCCGCACACCCGTTTTGTGGGTTGGCT
GAGGTATAGGGAGTTCATTCCACGTCTAAGCCCCAATCGAACTGAGGGTTGTGGCAGCGGGACCG
CAGCACGTAGAGGGTTGAGCACCCGCACCCTCGTTTT
Found at i:13789824 original size:158 final size:159
Alignment explanation
Indices: 13789657--13790025 Score: 374
Period size: 158 Copynumber: 2.3 Consensus size: 159
13789647 CGCACACCCT
* * * * * * * *
13789657 TTTCGTGGGTTGGCTGAGTTATAGGGAGTTCATTCCACGTCTAAGCCTCAGCT-GGA-CTGAGGG
1 TTTCATGGGTTGGCTTAGTCATACGGAGTTCATTCCACGTCTAAGCATCAGATCAGATC-AAGGG
* * * * *
13789720 TTGTGGCAGCGGGACCG-GAGCACGTAGAGGGAGACC-AGGCCAATCCCCGGCTTGTGCATTATG
65 TTGCGGCAGCAGGACCGAGAGCACGTAG-GGGAGACCGA-GCCAATCCCCGACTTGCGAATTATG
* *
13789783 CCTCTTCGATCGGCTCACCGCCCGCACGCTTG
128 CCTCTCCGATCGGCTCACCGCCCGCACGCTCG
* **
13789815 TTTCATGGGTTGACTTA-TGCATACGGAGTTCATT-CACAGTCTAAG-ATTGGATCAGATCAAGG
1 TTTCATGGGTTGGCTTAGT-CATACGGAGTTCATTCCAC-GTCTAAGCATCAGATCAGATCAAGG
* * * * *
13789877 GTTGCGGCAGCAGGATCGATAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGCGAATTCTGC
64 GTTGCGGCAGCAGGACCGAGAGCACGTAGGGGAGACCGAGCCAATCCCCGACTTGCGAATTATGC
* **
13789942 CTCTCCGATCGGCTGAGTGCCCGCACGCTCG
129 CTCTCCGATCGGCTCACCGCCCGCACGCTCG
* * *
13789973 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGA
1 TTTCATGGGTTGGCTTAGTCATACGGAGTTCATTCCACGTCTAAGCAT-CAGA
13790026 GTTCATTCCC
Statistics
Matches: 169, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
157 7 0.04
158 145 0.86
159 15 0.09
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGTCATACGGAGTTCATTCCACGTCTAAGCATCAGATCAGATCAAGGGT
TGCGGCAGCAGGACCGAGAGCACGTAGGGGAGACCGAGCCAATCCCCGACTTGCGAATTATGCCT
CTCCGATCGGCTCACCGCCCGCACGCTCG
Found at i:13790041 original size:26 final size:26
Alignment explanation
Indices: 13789991--13790043 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13789981 GTTGGCTTAG
*
13789991 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
13790017 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13790043 G
1 G
13790044 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13790129 original size:11 final size:11
Alignment explanation
Indices: 13790113--13790145 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
13790103 CTCGGGGCAC
13790113 CATCGTCGGAG
1 CATCGTCGGAG
13790124 CATCGTCGGAG
1 CATCGTCGGAG
13790135 CATCGTCGGAG
1 CATCGTCGGAG
13790146 AGCCTAATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13790993 original size:21 final size:21
Alignment explanation
Indices: 13790964--13791003 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13790954 TTGTGGCAAC
13790964 GGGACCGACAGCACGCAGAGG
1 GGGACCGACAGCACGCAGAGG
* *
13790985 GGGATCGACAGCACTCAGA
1 GGGACCGACAGCACGCAGA
13791004 TTGGCTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.28, G:0.38, T:0.05
Consensus pattern (21 bp):
GGGACCGACAGCACGCAGAGG
Found at i:13791253 original size:26 final size:26
Alignment explanation
Indices: 13791207--13791256 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13791197 GGCTTAGGCA
*
13791207 TACGGAGTTCATTTCACGTCTAAGCG
1 TACGGAGTTCATTCCACGTCTAAGCG
13791233 TACGGAGTTCATTCC-CAGTCTAAG
1 TACGGAGTTCATTCCAC-GTCTAAG
13791257 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCACGTCTAAGCG
Found at i:13795985 original size:159 final size:159
Alignment explanation
Indices: 13795684--13796187 Score: 393
Period size: 158 Copynumber: 3.2 Consensus size: 159
13795674 CCCAGTCTAA
* ** * * *
13795684 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACC-GAACCGAGGGTTACGGTAGTAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAG-ACCGAGGGTTGTGGCAGCAGGACCG
* * * ** ** ** *
13795746 GCATCACGCAAGG-GGGACCGAGCTGATCCCCGACTTGCGTATTCTA-CCTCTTTGGTCGGCT-A
64 ACAGCACAC-AGGAGGGACCGAGCCAATCCCCGACTTGCACATTC-AGCCTCTCCGGCCGGCTCA
* * * *
13795808 GGCTCCCGAATGCCCGTTTCGTGGGTTGGCTTAG
127 -GCACCCTAACGCTCGTTTCGTGGGTTGGCTTAG
* * **
13795842 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* *
13795906 AGCACACCGAGG-GGGACCGAGCCAATCCCCGGCTTGCACATT-ATGCCTCTCTGGCCGGCTCAG
66 AGCACA-C-AGGAGGGACCGAGCCAATCCCCGACTTGCACATTCA-GCCTCTCCGGCCGGCTCAG
** * * *
13795969 -TGCTTGAACGCTCGTTTCATGGGTTGACTTAG
128 CACCCT-AACGCTCGTTTCGTGGGTTGGCTTAG
*** * *
13796001 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGA
* * * * ** * *
13796064 TAGCACACAGGAGGGATCGGGTCGGTCCTCGACTTGCACATTCAGCCTCTCCGGCCGGCTGAGCA
65 CAGCACACAGGAGGGACCGAGCCAATCCCCGACTTGCACATTCAGCCTCTCCGGCCGGCTCAGCA
* ** *
13796129 CCCTCACGCTTATTTCGTGGGTTGGATTAG
130 CCCTAACGCTCGTTTCGTGGGTTGGCTTAG
*
13796159 GCATACAGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13796188 TATGGAGTTC
Statistics
Matches: 276, Mismatches: 55, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
157 10 0.04
158 135 0.49
159 127 0.46
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
AGCACACAGGAGGGACCGAGCCAATCCCCGACTTGCACATTCAGCCTCTCCGGCCGGCTCAGCAC
CCTAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13796405 original size:26 final size:26
Alignment explanation
Indices: 13796356--13796407 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13796346 GCTGGCTTAG
*
13796356 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCAATCCATGTCTAA
13796382 GCATACGGAGTTCAATCTCA-GTCTAA
1 GCATACGGAGTTCAATC-CATGTCTAA
13796408 TAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCATGTCTAA
Found at i:13796886 original size:26 final size:26
Alignment explanation
Indices: 13796856--13796908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13796846 GTTGGCTTAG
*
13796856 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13796882 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13796908 G
1 G
13796909 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13798789 original size:26 final size:26
Alignment explanation
Indices: 13798753--13798805 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13798743 GTTGACTTAG
*
13798753 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13798779 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13798805 G
1 G
13798806 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13799611 original size:158 final size:158
Alignment explanation
Indices: 13799257--13799626 Score: 381
Period size: 159 Copynumber: 2.3 Consensus size: 158
13799247 TCCACCCCCG
* * * * * *
13799257 CACGCCCGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAGGAT
1 CACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCACGTCTAAGACCAAACAGGAT
* * * * *
13799322 CGAGGGTTGTGGTAGCAGGACTGGCAGCACGCAGAGGGGGACTGGGCTGATCCCCGACTTGCGCA
65 CGAGGGTTGTGGTAGCAGGACTGACAGCACGCAAAGGGGGACAGGCCTGATCCCCGACATGCGCA
* *
13799387 TTATGCCTCTCCGACTGGCTCAGCAACCG
130 TTATGCCACTCCGACTGGCTCAGCAACCA
* * * *
13799416 CACGCTCATTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCC-CAGTCTAAGATCAAATC-GG
1 CACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCAC-GTCTAAGACCAAA-CAGG
* * * ** *
13799479 ATTGAGGGTTGTGGTAGCAGGA-TCGACAGTATGCAAAGGGGTCCAGGCCT-ATCCCCGGCATGC
63 ATCGAGGGTTGTGGTAGCAGGACT-GACAGCACGCAAAGGGGGACAGGCCTGATCCCCGACATGC
* * * **
13799542 GCATTCTGCCACTCCG-GTCGGCTGAGCGCCCA
127 GCATTATGCCACTCCGACT-GGCTCAGCAACCA
*
13799574 CACGCTCGTTTCGTGGGTTAGCTTAGGCATATGGAGTTCATTCCACGTCTAAG
1 CACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCACGTCTAAG
13799627 CATACGGAGT
Statistics
Matches: 172, Mismatches: 32, Indels: 15
0.79 0.15 0.07
Matches are distributed among these distances:
157 1 0.01
158 81 0.47
159 89 0.52
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
CACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCACGTCTAAGACCAAACAGGATC
GAGGGTTGTGGTAGCAGGACTGACAGCACGCAAAGGGGGACAGGCCTGATCCCCGACATGCGCAT
TATGCCACTCCGACTGGCTCAGCAACCA
Found at i:13799636 original size:26 final size:26
Alignment explanation
Indices: 13799600--13799652 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13799590 GTTAGCTTAG
*
13799600 GCATATGGAGTTCATTCC-ACGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13799626 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13799652 G
1 G
13799653 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13800001 original size:25 final size:26
Alignment explanation
Indices: 13799967--13800018 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13799957 GTTGACTTAG
*
13799967 GCATATGGAGTT-ATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13799992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13800018 G
1 G
13800019 ATCATATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13800062 original size:354 final size:362
Alignment explanation
Indices: 13799528--13800180 Score: 813
Period size: 354 Copynumber: 1.8 Consensus size: 362
13799518 GGTCCAGGCC
* * * * * * *
13799528 TATCCCCGGCATGCGCATTCTGCCACTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTT
1 TATCCCCGACATGCGCATTATGCCACTCCAGCCAGCTGAGCGCCCACACGCTCGTTCCATGGGTT
* * **
13799593 AGCTTAGGCATATGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGG
66 AGCTTAGGCATATGGAGTTCATCCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
*
13799658 ACCGGACCGAGGATTACAGCAGCAGGACTAGTAGCAGGATCGACAGCACGTAGGGGGGACCAGGC
131 ACCAGACCGAGGATTACAG-AGCAGGAC---TA-CAGGATCGACAGCACGTAGGGGGGACCAGGC
* * * * * * * *
13799723 CGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGTGCCCACACACTCGTTTTGTTGGT
191 CAATCCCCGACTGGCACACTCTGCCTCTCCGACCAGCTGAGCGCCCACACACCCGTTTCGTGGGT
13799788 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAG
256 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAG
13799853 GACTGGCAGCGGGATCGACAGCATGCAGAGAGGGACTGAGCT
321 GACTGGCAGCGGGATCGACAGCATGCAGAGAGGGACTGAGCT
* * *
13799895 TATCCCCGACTTGCGCATTATGCCTCTCCAGCCAGCTGAGCGCCCACATGCTCGTTCCATGGGTT
1 TATCCCCGACATGCGCATTATGCCACTCCAGCCAGCTGAGCGCCCACACGCTCGTTCCATGGGTT
13799960 -GACTTAGGCATATGGAGTT-ATCCC-CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 AG-CTTAGGCATATGGAGTTCATCCCAC-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * ** * * *
13800022 ATATCAGATTGAGGGTTAC-G-GCA-G-C-A-A-GATCGGTAGCACGTAGGGGGGATCGGGTCAA
129 AGACCAGACCGAGGATTACAGAGCAGGACTACAGGATCGACAGCACGTAGGGGGGACCAGGCCAA
* * * ** *
13800080 TCCTCGACTGGCACACTCTGCCTCTTCGACCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGG
194 TCCCCGACTGGCACACTCTGCCTCTCCGACCAGCTGAGCGCCCACACACCCGTTTCGTGGGTTGG
*
13800145 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
259 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
13800181 GACCAGACTG
Statistics
Matches: 244, Mismatches: 40, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
354 112 0.46
355 1 0.00
357 1 0.00
361 1 0.00
362 1 0.00
363 3 0.01
365 2 0.01
366 51 0.21
367 72 0.30
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (362 bp):
TATCCCCGACATGCGCATTATGCCACTCCAGCCAGCTGAGCGCCCACACGCTCGTTCCATGGGTT
AGCTTAGGCATATGGAGTTCATCCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCGAGGATTACAGAGCAGGACTACAGGATCGACAGCACGTAGGGGGGACCAGGCCAATC
CCCGACTGGCACACTCTGCCTCTCCGACCAGCTGAGCGCCCACACACCCGTTTCGTGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACTG
GCAGCGGGATCGACAGCATGCAGAGAGGGACTGAGCT
Found at i:13800485 original size:26 final size:26
Alignment explanation
Indices: 13800455--13800505 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13800445 TGACTTATGC
13800455 ATACGGAGTTCATT-CCACGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
13800481 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
13800506 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:13801059 original size:317 final size:315
Alignment explanation
Indices: 13800481--13801298 Score: 928
Period size: 317 Copynumber: 2.6 Consensus size: 315
13800471 ACGTCTAAGG
* * * * * *
13800481 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTTCGGCAGCAGGATCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGATCGACAGC
* * * * * * *
13800546 ATGTAGGGGGACCGGGTCAATTCCCAGCTTGCGCATTCTGCGTCTCCGACC-AGTTGAGCACCCG
66 ACGTAGGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGA-CTGAGCA-CCA
* * * * *
13800610 CAGGCCCATTTCGTGGGTTAGCTTAGGTATAAGGAGTTCATTCCATATCTAAGCCCCAGTTGGAC
129 CACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * * * *
13800675 CGAGGGTTATGGAAATGGGATCGACAGCATGCAGAGGGGGATCGGGCCGATCCCTAGCTTACGCA
194 CGAGGGTTATGGAAACGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCA
* * * *
13800740 TTACGCCTCTTCGGTCAG-TTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTATCC
259 TTACGCCTCTTCAGT-AGACTCAGCGCCCACACGCTCATTTCATGGGTTGACTTATCC
*
13800797 ATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGGTTGCGACAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGATCGACAGC
* * *
13800862 ACGCAGGAGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCACGCA
66 ACGTAGG-GGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCAC-CA
* * * * *
13800927 CACGCCCGTTTCATGGATTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
129 CACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * * * * * * *
13800992 TGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCA
194 CGAGGGTTATGGAAACGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCA
* * * * * *
13801057 TTATGCCTCTTCAGTTGACTCAGCTCCCGCACGCTCATTTCATGGGTTGAGTTATGC
259 TTACGCCTCTTCAGTAGACTCAGCGCCCACACGCTCATTTCATGGGTTGACTTATCC
* * * * *
13801114 ATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAA-GGTTGC-AGCAGCAGGATCGACA
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC-CAAGGGTTGCGA-CAGCAGGATCGACA
* * * * * *
13801177 GCACGTAGGGGGGACTGGGCCAATCCTC-GATTTGTGCATTCTGCCCTCTCCGGTCGACTGAGCG
64 GCACGTA-GGGGGACCGGGCCAATCCCCAG-CTTGCGCATTCTG-CCTCTCCGGCCGACTGAGCA
*
13801241 CCAGCACAG-TCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
126 CCA-CAC-GCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13801299 ATACAGAGTT
Statistics
Matches: 420, Mismatches: 71, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
316 67 0.16
317 282 0.67
318 70 0.17
319 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (315 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGATCGACAGC
ACGTAGGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCACA
CGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCG
AGGGTTATGGAAACGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATT
ACGCCTCTTCAGTAGACTCAGCGCCCACACGCTCATTTCATGGGTTGACTTATCC
Found at i:13801281 original size:159 final size:155
Alignment explanation
Indices: 13800481--13801297 Score: 471
Period size: 159 Copynumber: 5.2 Consensus size: 155
13800471 ACGTCTAAGG
** * * *
13800481 ATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGA-TCGAGGGTTTCGGCAGCAGGATCGATA
1 ATACGGAGTTCATT-CCATGTCTAAGATCAAATCGGACT-GAAGGTTGC-GCAGCAGGATCGACA
* * * * * * * *
13800544 GCATGTA-GGGGGACCGGGTCAATTCCC-AGCTTGCGCATTCTGCGTCTCC-GACCAGTTGAGCA
63 GCACGCAGGGGGGACCGGGCCGA-TCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGA-CTGAG--
* * * *
13800606 CCCGCA-GGCCCATTTCGTGGGTTAGCTTAGGT
123 CCCGCACAGCTCATTTCATGGGTTAGCTTAGGC
* * ** * * * * * * ***
13800638 ATAAGGAGTTCATTCCATATCTAAGCCCCAGTTGGACCGAGGGTTATG-GAAATGGGATCGACAG
1 ATACGGAGTTCATTCCATGTCTAAGATCAAATCGGACTGAAGG-T-TGCGCAGCAGGATCGACAG
* * * * * * *
13800702 CATGCAGAGGGGGATCGGGCCGATCCCTAGCTTACGCATTAC-GCCTCTTCGGTC-AGTTCAGCG
64 CACGCAG-GGGGGACCGGGCCGATCCCGA-CTTGCGCATT-CTGCCTCTCCGGTCGA-CTGAGC-
* * **
13800765 CC-CACACGCTCGTTTCGTGGGTT-GACTTATCC
124 CCGCACA-GCTCATTTCATGGGTTAG-CTTAGGC
* * *
13800797 ATACGGAGTTCATTCCCA-GTCTAAGATTAGATCGGAC-CAAGGGTTGCGACAGCAGGATCGACA
1 ATACGGAGTTCATT-CCATGTCTAAGATCAAATCGGACTGAA-GGTTGCG-CAGCAGGATCGACA
* * * * *
13800860 GCACGCAGGAGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCACG
63 GCACGCAGGGGGGACCGGGCCGATCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGACTGAGCCCG
* * * * *
13800925 CACACGCCCGTTTCATGGATTGGTTTAGGC
127 CACA-GCTCATTTCATGGGTTAGCTTAGGC
* ** * * * * * * * *
13800955 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGCGGGACCGGCAGC
1 ATACGGAGTTCATTCCATGTCTAAGATCAAATCGGACTGAAGGTTG-CGCAGCAGGATCGACAGC
* * * * * * *
13801020 ACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCAGTTGACTCAGCTCCC
65 ACGCAG-GGGGGACCGGGCCGAT-CCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAG--CCC
*
13801085 GCAC-GCTCATTTCATGGGTTGAG-TTATGC
126 GCACAGCTCATTTCATGGGTT-AGCTTAGGC
* *
13801114 ATACGGAGTTCATTCC-TAGTCTAAGATCAAACCAGACTGAAGGTTGCAGCAGCAGGATCGACAG
1 ATACGGAGTTCATTCCAT-GTCTAAGATCAAATCGGACTGAAGGTTGC-GCAGCAGGATCGACAG
* * * * *
13801178 CACGTAGGGGGGACTGGGCCAATCCTCGATTTGTGCATTCTGCCCTCTCCGGTCGACTGAGCGCC
64 CACGCAGGGGGGACCGGGCCGATCC-CGACTTGCGCATTCTG-CCTCTCCGGTCGACTGAGC-CC
*
13801243 AGCACAG-TCATTTCGTGGGTTAGCTTAGGC
126 -GCACAGCTCATTTCATGGGTTAGCTTAGGC
*
13801273 ATAGGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
13801298 CATACAGAGT
Statistics
Matches: 501, Mismatches: 121, Indels: 74
0.72 0.17 0.11
Matches are distributed among these distances:
156 3 0.01
157 58 0.12
158 153 0.31
159 269 0.54
160 12 0.02
161 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAAATCGGACTGAAGGTTGCGCAGCAGGATCGACAGCA
CGCAGGGGGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCCCGCACA
GCTCATTTCATGGGTTAGCTTAGGC
Found at i:13802474 original size:26 final size:26
Alignment explanation
Indices: 13802438--13802490 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13802428 GTTGGCTTAG
13802438 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13802464 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13802490 G
1 G
13802491 ATCGGATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13803318 original size:158 final size:158
Alignment explanation
Indices: 13802982--13803346 Score: 423
Period size: 158 Copynumber: 2.3 Consensus size: 158
13802972 TCCGCACGCC
* * * * *
13802982 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGGATCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGCCGGACCAAGGG
* * * * *
13803047 TTGCGGTAGCGGGACCGGCAGCACGCAGAGGGGAGCCGAGCCGATCCCCGGCTTGCGCATTATGC
65 TTACGATAGCAGGACCGACAGCACGCAGAGGGGAGCCGAGCCAATCCCCGGCTTGCGCATTATGC
* *
13803112 CTCTTCGGTCGGCTTAGCGCCCGTACACT
130 CTCTTCGGTCGGCTGAGCGCCCGAACACT
* ** * *
13803141 TGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAG-CCGGACCAAGG
* * * * *
13803205 GTTACGATAGCAGGATCGACAGCATGCAGGGGGGA-CC-AGGCCAATCCCCGGCTTGTGCATTCT
64 GTTACGATAGCAGGACCGACAGCACGCAGAGGGGAGCCGA-GCCAATCCCCGGCTTGCGCATTAT
* * **
13803268 GCCTTTTCGGTCGGCTGA-CTGCTCGAAGGCT
128 GCCTCTTCGGTCGGCTGAGC-GCCCGAACACT
13803299 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
13803347 ATACAGAGTT
Statistics
Matches: 171, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.01
158 92 0.54
159 77 0.45
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGCCGGACCAAGGGT
TACGATAGCAGGACCGACAGCACGCAGAGGGGAGCCGAGCCAATCCCCGGCTTGCGCATTATGCC
TCTTCGGTCGGCTGAGCGCCCGAACACT
Found at i:13803357 original size:26 final size:26
Alignment explanation
Indices: 13803321--13803372 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13803311 TGGCTTAGGC
*
13803321 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACAGAGTTCATTCCCA-GTCTAAGA
13803347 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
13803373 TCTAACCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:13804381 original size:26 final size:26
Alignment explanation
Indices: 13804330--13804382 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13804320 GTTGGCTTCG
*
13804330 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
13804356 GCATATGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
13804382 G
1 G
13804383 ATTTTTAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:13805550 original size:317 final size:315
Alignment explanation
Indices: 13804943--13805707 Score: 907
Period size: 318 Copynumber: 2.4 Consensus size: 315
13804933 ACCGCAGTAA
*
13804943 GATCGACAGCACGCAGGGAGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGC
1 GATCGACAGCACGCAGGGAGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGA-CGG-
* * * * *
13805008 TGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCACAGGGAGCTCATTACATGTCTAAGCC
64 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * *
13805073 CCAGCCAGACCAAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGGACCGAGCTGATCCC
129 CCAACCAGACCAAG-AGGACCGGCAGCGGGATCGACAGCATGCAAAGAGGAACCGAGCTGATCCC
* *
13805138 CGGCTTGCACATTATGCCTCTCCCGTCGGCTGAGCGCTCACACACTCATTTCACTGGTTGACATA
193 CGGCTTGCACATTATGCCTCTCCCGTCGGCTCAGCGCCCACACACTCATTTCACTGGTTGACATA
* * *
13805203 GGCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAG
258 GGCATACGAAGTTCATTCCCAGCCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAG
* * * *
13805261 GATTGACAGCACGTAGGG-GGCACCGGG-CAGATCCTCC-GCTTGTGCATTCTGCCTCTTCGATC
1 GATCGACAGCACGCAGGGAGG-ACCGGGTC-GATCC-CCAGCTTGCGCATTCTGCCTCTCCGA-C
* * *
13805323 GGTTGAGCGCCTGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
62 GG-TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * ** * * * *
13805388 GCCCCAATCAGACGAAG-GG-TTGTTGCAGCGGGA-CTGGCAGCATGCAAAGAGGAATCGGGTTG
126 GCCCCAACCAGACCAAGAGGACCG--GCAGCGGGATC-GACAGCATGCAAAGAGGAACCGAGCTG
* *** * * * *
13805450 ATCCCCGGCTTGCTCATTATGCCTCTTTGGTCTGCTCAGTGCCCATACACTCGTTTCA-TGGGTT
188 ATCCCCGGCTTGCACATTATGCCTCTCCCGTCGGCTCAGCGCCCACACACTCATTTCACT-GGTT
* * **
13805514 GACTTAGGCATAC-AGAGTTCATTCCCAGCCTAAGATCAGATCGGACTGATGGTTTTGGTAGCAG
252 GACATAGGCATACGA-AGTTCATTCCCAGCCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAG
* *
13805578 GATCGATAGCACGCAGGGAGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACTGA
1 GATCGACAGCACGCAGGGA-GGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC-G-
* * **
13805643 GTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTTGGCATACAGAGTTCATTCCATGTCTAAGC
63 GTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13805708 ATATGGAGTT
Statistics
Matches: 377, Mismatches: 56, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
315 1 0.00
316 5 0.01
317 158 0.42
318 207 0.55
319 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (315 bp):
GATCGACAGCACGCAGGGAGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACGGTG
AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AACCAGACCAAGAGGACCGGCAGCGGGATCGACAGCATGCAAAGAGGAACCGAGCTGATCCCCGG
CTTGCACATTATGCCTCTCCCGTCGGCTCAGCGCCCACACACTCATTTCACTGGTTGACATAGGC
ATACGAAGTTCATTCCCAGCCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAG
Found at i:13805604 original size:159 final size:159
Alignment explanation
Indices: 13805131--13805706 Score: 469
Period size: 159 Copynumber: 3.6 Consensus size: 159
13805121 GGGACCGAGC
* * * *
13805131 TGATCCCCGGCTTGCACATTATGCCTCTCCCGTCGGCTGAGCGCTCACACACTCATTTCACT-GG
1 TGATCCCCGGCTTGCTCATTATGCCTCTTCCGTCGGCTGAGCGCCCACACACTCGTTTCA-TGGG
* * * **
13805195 TTGACATAGGCATAC-GAAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGC
65 TTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTTTGGTAGC
* * * * *
13805259 AGGATTGACAGCACGTAGGG-GGCACCGGGC
129 AGGATCGACAGCACGCAGGGAGGAATCGGGT
* * * ** *
13805289 AGATCCTCC-GCTTG-TGCATTCTGCCTCTT-CGATCGGTTGAGCGCCTGCACACCCGTTTCATG
1 TGATCC-CCGGCTTGCT-CATTATGCCTCTTCCG-TCGGCTGAGCGCCCACACACTCGTTTCATG
* ** ** *
13805351 GGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATCAGAC-GAAGGGTTGTT-
63 GGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTG-AGGGTT-TTG
* * * * **
13805412 GCAGCGGGA-CTGGCAGCATGCAAAGAGGAATCGGGT
124 GTAGCAGGATC-GACAGCACGCAGGGAGGAATCGGGT
** * * * *
13805448 TGATCCCCGGCTTGCTCATTATGCCTCTTTGGTCTGCTCAGTGCCCATACACTCGTTTCATGGGT
1 TGATCCCCGGCTTGCTCATTATGCCTCTTCCGTCGGCTGAGCGCCCACACACTCGTTTCATGGGT
* *
13805513 TGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCAGATCGGACTGATGGTTTTGGTAGCAG
66 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTTTGGTAGCAG
* *
13805578 GATCGATAGCACGCAGGGAGGGATCGGGT
131 GATCGACAGCACGCAGGGAGGAATCGGGT
* * * * * * * *
13805607 CGATCCCCAGCTTGCGCATTCTGCCTC-TCCGACTGAG-TGAGCGCCCGCACGCTCGTTTCGTGG
1 TGATCCCCGGCTTGCTCATTATGCCTCTTCCGTC-G-GCTGAGCGCCCACACACTCGTTTCATGG
* *
13805670 GTTGGCTTTGGCATACAGAGTTCATT-CCATGTCTAAG
64 GTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
13805707 CATATGGAGT
Statistics
Matches: 321, Mismatches: 75, Indels: 43
0.73 0.17 0.10
Matches are distributed among these distances:
157 6 0.02
158 112 0.35
159 195 0.61
160 8 0.02
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (159 bp):
TGATCCCCGGCTTGCTCATTATGCCTCTTCCGTCGGCTGAGCGCCCACACACTCGTTTCATGGGT
TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTTTGGTAGCAG
GATCGACAGCACGCAGGGAGGAATCGGGT
Found at i:13806382 original size:159 final size:160
Alignment explanation
Indices: 13806119--13806578 Score: 525
Period size: 159 Copynumber: 2.9 Consensus size: 160
13806109 GTACCGAGGG
* * * * * *
13806119 TTGCGGTAGCAAGATCCATAGCACGCA-AGGGGGATCGGGCCGATGCCCGACTTGCGCATTCTGC
1 TTGCGGCAGCAGGATCAACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGC
** * *
13806183 CTCTCCGACCAACTGAGCGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
66 CTCTCCGACCGGCTGAGCGCCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * *
13806247 TCCATGTCTAAGCCCCA-ATCGGACCAAGGG
130 TCCATGTCTAAGCACCAGATCAGACCAAGGA
* ** * * * * * *
13806277 TTGTGGCAGGGGGATCGACAGCACGTAGAGGGGGACCGAGCCGATCCCCGGCTTGCACATTATGC
1 TTGCGGCAGCAGGATCAACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGC
* * * * * * *
13806342 CTCTCCGACTGGCTCAGCACCCGCACGCTCATTTCCTGGGTTGACTTAGCCATACGAAGTTCATT
66 CTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* *
13806407 CCCA-GTCTAAG-ATCAGATCAGACTAAGGA
131 -CCATGTCTAAGCACCAGATCAGACCAAGGA
* * * *
13806436 TTGCGGCAGCAGGATCAACAGCACACAGGGGGGGATCGGGCTGGTCCCCGGCTTGCGCATTCTGC
1 TTGCGGCAGCAGGATCAACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGC
* * *
13806501 CTCTTCGACCGGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
66 CTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
13806566 CCATGTCTAAGCA
131 CCATGTCTAAGCA
13806579 TACAGAGTTC
Statistics
Matches: 243, Mismatches: 53, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
158 24 0.10
159 214 0.88
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (160 bp):
TTGCGGCAGCAGGATCAACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGC
CTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCACCAGATCAGACCAAGGA
Found at i:13806709 original size:184 final size:184
Alignment explanation
Indices: 13806399--13806821 Score: 469
Period size: 184 Copynumber: 2.3 Consensus size: 184
13806389 AGCCATACGA
* * * * * * *
13806399 AGTTCATTCCCAGTCTAAGATCAGATCAG-ACTAAGGATTGCGGCAGCAGGATCAACAGCACACA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGAAC-AAGGGTTGCGACAGCAGGATCGACATCACGCA
* * * * *
13806463 GGGGGGGA-TCGGG-CTGGTCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTGCCCGCA
65 -GGAGGGACT-GGGTC-GATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCA
* * * *
13806526 TGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAG
127 CGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCA-GTCTAAGCATACAG
* * * * *
13806584 AGTTCATTCCTAGTCTATGATTAGACCGGAACGAGGGTTGCGGCAGCAGGATCGACATCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGAACAAGGGTTGCGACAGCAGGATCGACATCACGCAG
* * *
13806649 GAGGGACTGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCC-AGTCGGTTGGGTGCCCGCACGC
66 GAGGGACTGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGTGCCCGCACGC
** ** * *
13806713 TTGTTTTGTGGGTTGACTTAAGCATATGGAGTTCATCCCCAGTCTAAGCATATAG
130 TCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
* *
13806768 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGATCG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGAACAAGGGTTGCGACAGCAGGATCG
13806822 GTAGCATACA
Statistics
Matches: 198, Mismatches: 35, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
183 1 0.01
184 139 0.70
185 56 0.28
186 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGAACAAGGGTTGCGACAGCAGGATCGACATCACGCAG
GAGGGACTGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCT
CATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
Found at i:13806770 original size:26 final size:26
Alignment explanation
Indices: 13806731--13806786 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
13806721 TGGGTTGACT
*
13806731 TAAGCATATGGAGTTCATCCCCAGTC
1 TAAGCATATAGAGTTCATCCCCAGTC
*
13806757 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATATAGAGTTCATCCCCAGTC
13806783 TAAG
1 TAAG
13806787 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATATAGAGTTCATCCCCAGTC
Found at i:13807625 original size:159 final size:158
Alignment explanation
Indices: 13807294--13807742 Score: 388
Period size: 159 Copynumber: 2.8 Consensus size: 158
13807284 GGACCAGCAG
* * * *
13807294 CAGGATCGACAGCATGCAGAGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTTTGGCT
1 CAGGATCGACAGCATGCAGAGGGGATCGGGCCGATCCCTGGCGTGCACATTATGCCTCTTCGACT
* * * *
13807359 GACTGAGCGGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GACTCAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCATGTCTAA
* *
13807424 GCCCCAGCCGGACCGAGGGTTGTGGCAT
131 GCCCCAGCCGGACCGAGGGTTGCGACAT
* * * * * * *
13807452 CGGGA-CTGGCAGCATGCAGAAGGGGATTGGGCCGATCCTTGTCGTGCTCATTATTCCTCTTCGA
1 CAGGATC-GACAGCATGCAG-AGGGGATCGGGCCGATCCCTGGCGTGCACATTATGCCTCTTCGA
* *
13807516 CTGGCTCAGC-ACCTGCACGCTCGTTTCGTGGGTTGACTTAGGAATATGGAGTTCATTCC-TAGT
64 CTGACTCAGCGACC-GCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCAT-GT
** * * *
13807579 CTAAG-ATCGGATCGGGCCGAGGGTTGCGACAGT
127 CTAAGCCCCAG-CCGGACCGAGGGTTGCGACA-T
* * * ** * * * * ** * *
13807612 -AGGATCGATAGCATGTAGGGGGGATCGAACCGATCCCCGGCTTGCGCATTCTGCCTCCCCAACC
1 CAGGATCGACAGCATGCAGAGGGGATCGGGCCGATCCCTGGCGTGCACATTATGCCTCTTCGACT
* * * * * * * *
13807676 GGCTGAGC-ACCCGCACTCTCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTA
66 GACTCAGCGA-CCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCATGTCTA
13807740 AGC
130 AGC
13807743 ATATGGAGTT
Statistics
Matches: 230, Mismatches: 51, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 104 0.45
159 123 0.53
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
CAGGATCGACAGCATGCAGAGGGGATCGGGCCGATCCCTGGCGTGCACATTATGCCTCTTCGACT
GACTCAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCATGTCTAA
GCCCCAGCCGGACCGAGGGTTGCGACAT
Found at i:13807894 original size:513 final size:513
Alignment explanation
Indices: 13807019--13807957 Score: 1299
Period size: 513 Copynumber: 1.8 Consensus size: 513
13807009 TAGTGCCCGT
13807019 ACGCTCGTTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
1 ACGCTCGTTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
** * *** *
13807084 GAGGATTGCGGTAGTAGGATCGACAGCACGCAGGGGGGATTGGGTCGGTCCCCGACTCGCGCATT
66 GAGGATTGCGACAGTAGGATCGACAGCACGCAGGGGGGATCGAACCGATCCCCGACTCGCGCATT
* * * * * * *
13807149 TTGCCTCTCCGATCGGTTGAACGCCCACACGCTCATTTCGGGGGTTGGCTTAGGCATACAGAGTT
131 CTGCCTCCCCAACCGGCTGAACACCCACACGCTCATTTCAGGGGTTGGCTTAGGCATACAGAGTT
* * * *
13807214 CATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGAGG
196 CATTCCATATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGA
* * * * *
13807279 CAGTAGGACCAGCAGCAGGATCGACAGCATGCAGAGGGGATCGGGCCGATCCCTGGCTTGCACAT
261 CAGCAGGACCAGCAGCAAGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCTAGCTTGCACAT
** * ** *
13807344 TCTGCCTCTTTGGCTGACTGAGCGGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
326 TCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
*
13807409 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCATCGGGACTGGCAGCATGCAGAAG
391 TCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCATCGGGACTGGCAGCATGCAGAAG
13807474 GGGATTGGGCCGATCCTTGTCGTGCTCATTATTCCTCTTCGACTGGCTCAGCACCTGC
456 GGGATTGGGCCGATCCTTGTCGTGCTCATTATTCCTCTTCGACTGGCTCAGCACCTGC
* * * * * *
13807532 ACGCTCGTTTCGTGGGTTGACTTAGGA-ATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGGC
1 ACGCTCGTTTCGTGGGTTGACTTA-GACATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * *
13807596 CGAGGGTTGCGACAGTAGGATCGATAGCATGTAGGGGGGATCGAACCGATCCCCGGCTTGCGCAT
65 CGAGGATTGCGACAGTAGGATCGACAGCACGCAGGGGGGATCGAACCGATCCCCGACTCGCGCAT
* * * * * *
13807661 TCTGCCTCCCCAACCGGCTGAGCACCCGCACTCTCCTTTCATGGGTTGGCTTAGGCATACGGAGT
130 TCTGCCTCCCCAACCGGCTGAACACCCACACGCTCATTTCAGGGGTTGGCTTAGGCATACAGAGT
* * *
13807726 TCATTCCATATCTAAGCATATGGAGTTCGTTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCG
195 TCATTCCATATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAG
* * * *
13807791 ACAGCAGGACCAGCAGCAAGATCGATAGCACGTAG-GAGGGACCGGGTCGAT-CCTCAGCTTGCG
260 ACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGAG-GGGACCGGGCCGATCCCT-AGCTTGCA
* *
13807854 CATTCTGCCTCTCCGGCCGATTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGG
323 CATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* *
13807919 AGTTCATTTCAAGTCTAAGCCCCAGCTGGACCGAGGGTT
388 AGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTT
13807958 TTGGTAGTCG
Statistics
Matches: 364, Mismatches: 59, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
512 4 0.01
513 358 0.98
514 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (513 bp):
ACGCTCGTTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
GAGGATTGCGACAGTAGGATCGACAGCACGCAGGGGGGATCGAACCGATCCCCGACTCGCGCATT
CTGCCTCCCCAACCGGCTGAACACCCACACGCTCATTTCAGGGGTTGGCTTAGGCATACAGAGTT
CATTCCATATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGA
CAGCAGGACCAGCAGCAAGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCTAGCTTGCACAT
TCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCATCGGGACTGGCAGCATGCAGAAG
GGGATTGGGCCGATCCTTGTCGTGCTCATTATTCCTCTTCGACTGGCTCAGCACCTGC
Found at i:13808430 original size:158 final size:157
Alignment explanation
Indices: 13808261--13808619 Score: 357
Period size: 158 Copynumber: 2.3 Consensus size: 157
13808251 GGTATGCCCA
* * * * *
13808261 TTTCATTGGTTGGCTTAGGCATAAGGAGTTTATTCCATGTCTAGCCCCAACCCGAACGAGGGTTG
1 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAGACCCAACCCGAACGAAGATTG
** * *
13808326 CGATAGCGGGACCGACAGCACGCAGAACGGGACCGGGTCAATC-CCCGTCTTATGCATTATACCT
66 CGATAGCAAGACCGACAGCACGCAGAA-GGGACCGGGTCAATCTCCAG-CTTACGCATTATACCT
* *
13808390 CTCCAGTCGGCTCAACGTCC-GCACGCTCG
129 CTCCAGTCGACTCAACG-CCTGCACACTCG
* * ** ** *
13808419 TTTCATGGGTTGACTTAGGCATACA-GAGTTCATTCCCA-GTCTAAGATCGGACTTGATCGAAGA
1 TTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATT-CCATGTCT-AGACCCAACCCGAACGAAGA
* * * * * * *
13808482 TTGCGGTAGCAAGATCGACAGCACGCAGGAGGGATCGGGTCGATCTCCAGCTTACGCATTCTGCC
63 TTGCGATAGCAAGACCGACAGCACGCAGAAGGGACCGGGTCAATCTCCAGCTTACGCATTATACC
** * *
13808547 TCTCCTTTCGATTCAGCGCCTGCACACTCG
128 TCTCCAGTCGACTCAACGCCTGCACACTCG
* *
13808577 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
13808620 AGCATACGGA
Statistics
Matches: 162, Mismatches: 32, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.04
158 113 0.70
159 43 0.27
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (157 bp):
TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAGACCCAACCCGAACGAAGATTG
CGATAGCAAGACCGACAGCACGCAGAAGGGACCGGGTCAATCTCCAGCTTACGCATTATACCTCT
CCAGTCGACTCAACGCCTGCACACTCG
Found at i:13808631 original size:26 final size:26
Alignment explanation
Indices: 13808595--13808647 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13808585 GTTGGCTTAG
13808595 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13808621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13808647 G
1 G
13808648 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13808783 original size:185 final size:184
Alignment explanation
Indices: 13808437--13808807 Score: 444
Period size: 185 Copynumber: 2.0 Consensus size: 184
13808427 GTTGACTTAG
** *
13808437 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTTGATCGAAGATTGCGGTAGCAAGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAAGATTGCAGTAGCAAGATCGACA
* * * * * ** *
13808502 GCACGCAGGAGGGATCGGGTCGATCTCCAGCTTACGCATTCTGCCTCTCCTTTCGATTCAGCGCC
66 GCACACAGGAGGGACCGAGCCGATCTCCAGCTTACACATTCTGCCTCTCCGCTCGACTCAGCGCC
* * * *
13808567 TGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACACTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCACGTCTAA
* * * *
13808621 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGGTTGCAGTAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAAGATTGCAGTAGCAAGATCGAC
* * * *
13808685 AGCACACAGAGGGGGACCGAGCCGATC-CCTTA-CTTGCACATTCTGCCTCTCCGGCT-GGCTGA
65 AGCACACAG-GAGGGACCGAGCCGATCTCC--AGCTTACACATTCTGCCTCTCC-GCTCGACTCA
* *
13808747 GTGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCACGTCTAA
126 GCGCCCGCACACTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCACGTCTAA
13808806 GC
1 GC
13808808 CCCAGTCGGA
Statistics
Matches: 157, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
183 1 0.01
184 65 0.41
185 89 0.57
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAAGATTGCAGTAGCAAGATCGACA
GCACACAGGAGGGACCGAGCCGATCTCCAGCTTACACATTCTGCCTCTCCGCTCGACTCAGCGCC
CGCACACTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCACGTCTAA
Found at i:13808987 original size:26 final size:25
Alignment explanation
Indices: 13808951--13809005 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 25
13808941 GTTGAATTAG
13808951 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCT-A
*
13808977 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
13809002 GCAT
1 GCAT
13809006 CAGACCGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 5 0.18
26 23 0.82
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGTCTA
Found at i:13808993 original size:356 final size:353
Alignment explanation
Indices: 13808531--13809320 Score: 879
Period size: 356 Copynumber: 2.3 Consensus size: 353
13808521 TCGATCTCCA
* ** * **
13808531 GCTTACGCATTCTGCCTCTCCTTTCGATTCAGCGCCTGCACACTCGTTTCGTGGGTTGGCTTAGG
1 GCTTACGCATTATGCCTCTCCGGTCGACTCAGCGCC-GCACACTCGTTTCGTGGGTTGAATTAGG
* *
13808596 CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGA-
65 CATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGCATCAGACCAGAT
* *
13808659 CTGAGGGT-TGCAGTAGCAGGATCGACAGCACACAGAGGGGGACCGAGCCGATCC-CTTACTTGC
129 C-GAGGGTCTG-A-CAGCAGGATCGACAGCACACAG-GGGGGACCGAGCCGATCCTC-GACTTGC
* * * * * *
13808722 ACATTCTGCCTCTCCGG-CTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTAG-CTTAGGCATA
189 ACATTCTGCCTCTACGGTC-GGCTGAGCGCCCCCACGCCCATTTCATGGGTT-GTCTTAGGCATA
13808785 CAGAGTTCATTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGTAACGGG
252 CAGAGTTCATTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGTAACGGG
13808850 ATCGACAGAACACAGAGGGGGACCGAGCTGATCCTCG
317 ATCGACAGAACACAGAGGGGGACCGAGCTGATCCTCG
* *
13808887 GCTTACGCATTATGCCTCTCCGGTCGACTGAGCGCC-CACAAGCTCGTTTTGTGGGTTGAATTAG
1 GCTTACGCATTATGCCTCTCCGGTCGACTCAGCGCCGCAC-A-CTCGTTTCGTGGGTTGAATTAG
*
13808951 GCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAGCATCAGACCGGA
64 GCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAGCATCAGACCAGA
* ** * * *
13809015 TCGAGGGTCGTGACAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTGCGCA
128 TCGAGGGTC-TGACAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCTCGACTTGCACA
* * * **
13809080 TTCTGCCTCTATGGTCGGCTGAGCGCCCCCATGCCCATTTCATGGGTTGTTTTAGGCATAGGGAG
192 TTCTGCCTCTACGGTCGGCTGAGCGCCCCCACGCCCATTTCATGGGTTGTCTTAGGCATACAGAG
* ** *
13809145 TTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACTGGT-A---G--C-A
257 TTCATTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGTAACGGGATCGA
* *
13809203 C-G--CA-A-AGGGGGATCG-GGTCGATCCTCG
322 CAGAACACAGAGGGGGACCGAGCT-GATCCTCG
* * * * * *
13809230 GCTTACGCATTATGCCTCT-CTGTCTGGCTCAGCATCTGCACGCTCGTTTCGTGGGTTGACTTAG
1 GCTTACGCATTATGCCTCTCCGGTC-GACTCAGC-GCCGCACACTCGTTTCGTGGGTTGAATTAG
*
13809294 GCGTACGGAGTTCATTCCCA-GTCTAAG
64 GCATACGGAGTTCA-TCCCATGTCTAAG
13809321 ATCAGACCAT
Statistics
Matches: 374, Mismatches: 45, Indels: 43
0.81 0.10 0.09
Matches are distributed among these distances:
342 6 0.02
343 86 0.23
344 3 0.01
345 5 0.01
347 1 0.00
348 2 0.01
349 1 0.00
351 1 0.00
354 5 0.01
355 127 0.34
356 130 0.35
357 5 0.01
358 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (353 bp):
GCTTACGCATTATGCCTCTCCGGTCGACTCAGCGCCGCACACTCGTTTCGTGGGTTGAATTAGGC
ATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAGCATCAGACCAGATCG
AGGGTCTGACAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCTCGACTTGCACATTCT
GCCTCTACGGTCGGCTGAGCGCCCCCACGCCCATTTCATGGGTTGTCTTAGGCATACAGAGTTCA
TTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGTAACGGGATCGACAGA
ACACAGAGGGGGACCGAGCTGATCCTCG
Found at i:13809337 original size:514 final size:508
Alignment explanation
Indices: 13808848--13809979 Score: 1177
Period size: 514 Copynumber: 2.2 Consensus size: 508
13808838 ACCGGTAACG
* * **
13808848 GGATCGACAGAACACAGAGGGGGACCGAGCT-GATCCTCGGCTTACGCATTATGCCTCTCCGGTC
1 GGATCGACAGAACACAG-GGAGGACCG-GCTCGATCCTCGACTTACGCATTATGCCTCTCCGACC
* *
13808912 GACTGAGCGCCCACAAGCTCGTTTTGTGGGTTGAATTAGGCATACGGAGTTCATCCCCA-GTCTA
64 GACTGAGCGCCCACAAGCTCATCTTGTGGGTTGAATTAGGCATACGGAGTTCAT-CCCATGTCTA
* * *
13808976 AGCATACGGAGTTCATTCCCAGTCT-AGCATCAGACCGGA-TCGAGGGTCG-TGACAGCAGGATC
128 AGCATACGGAGTTCATTCCCAGTCTAAG-ATCAAACCGGACT-GAGGCTCGCT-ACAGCAGGACC
* * * * ** *
13809038 -G-GCA-G-CAC-G-T-AGGGGGGATCGGGCCGAT-CCTCGACTTGCGCATTCTGCCTCTATG-G
190 AGAGCATGACACAGATCAGGAGGGACCAGGCCGATCCCTCGACTTACGCATTCTGCCTCTCCGAC
* * * ** *
13809094 TCGGCTGAGCGCCCCCATGCCCATTTCATGGGTTGTTTTAGGCATAGGGAGTTCATTCCATGTCT
255 T-GGCTGAACACCCCCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * *
13809159 AAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACTGGTAGCACGCAAAGGGGGATCGGGTCGA
319 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCACGCAAAGGGGGACCGGGTCGA
* * *
13809224 TCCTCGGCTTACGCATTATGCCTC-TCTGTCTGGCTCAGCATCTGCACGCTCGTTTCGTGGGTTG
384 TCCTCGGCTTACGCATTATGCCTCTTCGGT-TGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTG
* *
13809288 ACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCATACTGAGGGTTGCGGCAGCA
448 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCAGACTGAGGGTTGCGGCAGCA
* * * * * * * * *
13809350 GGATCGACAGCACGCAGGGAGGACCGGGTCGGTCCTCGACTTGCGCATTCTGCCTTTTCGACCGG
1 GGATCGACAGAACACAGGGAGGACCGGCTCGATCCTCGACTTACGCATTATGCCTCTCCGACCGA
* * * * ** *
13809415 TTGAGTGCCCGCACGCTCATCTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CTGAGCGCCCACAAGCTCATCTTGTGGGTTGAATTAGGCATACGGAGTTCATCCCATGTCTAAGC
* *
13809480 ATACGGAGTTGATTCCCAGTCTAAGATCAAACCGGACTGAGGCTTGCTACAGCAGGACCAGCAGC
131 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGCTCGCTACAGCAGGACCAG-AGC
* *
13809545 ATGATCCACAGCATGCAGGAGGGACCAGGTCGATCCCTCGACTTATGCATTCTGCCTCTCCGACT
195 ATGA--CACAG-AT-CAGGAGGGACCAGGCCGATCCCTCGACTTACGCATTCTGCCTCTCCGACT
** * *
13809610 GGCTGAACACCCGGACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
256 GGCTGAACACCCCCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
13809675 GCCCCAGTCGGACCGAGGGTTGTGGCATCAGGACTGGCAGCATGTAGAGGGGGACCGGGTCTATC
321 GCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCACGCAAAGGGGGACCGGGTCGATC
* * * * *
13809740 CTCGTCTTGCGCATTCTTCCTCTTCGGTTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACT
386 CTCGGCTTACGCATTATGCCTCTTCGGTTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACT
* ** * * *
13809805 TAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGA-TCGAGGGTTACGGTAGCA
451 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCAGACT-GAGGGTTGCGGCAGCA
* * * * * * * * *
13809864 GGATCGATAGCACACAGGGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCT-TCC-AGCCG
1 GGATCGACAGAACACAGGGAGGACCGGCTCGATCCTCGACTTACGCATTATGCCTCTCCGA-CCG
* * ** * * **
13809927 GCTGAGCACCCGTACGCTCCT-TTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
65 ACTGAGCGCCCACAAGCTCATCTT-GTGGGTTGAATTAGGCATACGGAGTTCAT
13809980 TCTATATCTA
Statistics
Matches: 525, Mismatches: 82, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
500 5 0.01
501 133 0.25
502 20 0.04
504 3 0.01
505 1 0.00
508 3 0.01
509 1 0.00
511 1 0.00
512 3 0.01
513 65 0.12
514 285 0.54
515 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (508 bp):
GGATCGACAGAACACAGGGAGGACCGGCTCGATCCTCGACTTACGCATTATGCCTCTCCGACCGA
CTGAGCGCCCACAAGCTCATCTTGTGGGTTGAATTAGGCATACGGAGTTCATCCCATGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGCTCGCTACAGCAGGACCAGAGCA
TGACACAGATCAGGAGGGACCAGGCCGATCCCTCGACTTACGCATTCTGCCTCTCCGACTGGCTG
AACACCCCCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGTCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCACGCAAAGGGGGACCGGGTCGATCCTCGG
CTTACGCATTATGCCTCTTCGGTTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGCCAGACTGAGGGTTGCGGCAGCA
Found at i:13809459 original size:158 final size:158
Alignment explanation
Indices: 13808977--13809481 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 158
13808967 CCCAGTCTAA
* *
13808977 GCATACGGAGTTCATTCCCA-GTCT-AGCATCAGACCGGAT-C-GAGGGTCGTGACAGCAGGATC
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACC--ATACTGAGGGTTGTGGCAGCAGGATC
* * **
13809038 GGCAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTAT-GGTCGGCTGA
63 GGCAGCACGCA-GGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCT-TATCGACCGGCTGA
* * * * **
13809102 GCGCCCCCATGCCCATTTCATGGGTTGTTTTAG
126 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* ** * ** *
13809135 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCATACTGAGGGTTGTGGCAGCAGGATC-GG
* * * * * * * *
13809198 TAGCACGCAAAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCC-TCTCTGTCTGGCTCAG
65 CAGCACGC--AGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTTATC-GACCGGCTGAG
** * *
13809262 CATCTGCACGCTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
13809294 GCGTACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCATACTGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCATACTGAGGGTTGTGGCAGCAGGATCGG
* * * * *
13809357 CAGCACGCAGGGAGGACCGGGTCGGTCCTCGACTTGCGCATTCTGCCTTTTCGACCGGTTGAGTG
65 CAGCACGCAGGG-GGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTTATCGACCGGCTGAGCG
*
13809422 CCCGCACGCTCATCTT-GTGGGTTGGCTTAG
129 CCCGCACGCTCAT-TTCGTGGGTTGACTTAG
13809452 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
13809482 ACGGAGTTGA
Statistics
Matches: 272, Mismatches: 58, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
157 14 0.05
158 128 0.47
159 125 0.46
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCATACTGAGGGTTGTGGCAGCAGGATCGGC
AGCACGCAGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTTATCGACCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:13809488 original size:26 final size:26
Alignment explanation
Indices: 13809452--13809504 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13809442 GTTGGCTTAG
13809452 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13809478 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13809504 G
1 G
13809505 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13809726 original size:857 final size:847
Alignment explanation
Indices: 13806956--13809834 Score: 2608
Period size: 857 Copynumber: 3.3 Consensus size: 847
13806946 AACAGCACGT
* * * * ** *
13806956 AGAGG-GGGACCAGGCCGATCCC-CAGCTTGCGCATTGTGCCTCTCCGTCTGGCTTAGTGCCCGT
1 AGAGGAGGGACC-GGTCGATCCCTCA-CTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGC
* * * * * ** * * *
13807019 ACGCTCGTTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAG-ATCGGACCAGAC
64 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAG-TCGGAC
* * * * * ** * * **
13807083 CGAGGATTGCGGTAGT-AGGA-TCGACAGCACGCAG-GGGGGATTGGG-TCGGTCCCCGACTCGC
128 CGAGGGTTGTGGCA-TCAGGACTAGGCAGCA-GCAGAGGGGGACCGGGCT-GATCCTCGACTTAC
* * * * * * * *
13807144 GCATTTTGCCTCTCCGATCGGTTGAACGCCCACACGCTCATTTCGGGGGTTGGCTTAGGCATACA
190 GCATTATGCCTCTCCGGTCGGCTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * *
13807209 GAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
255 GAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGG
* * *
13807273 TTGAGGCAGTAGGACCAGCAGCAGGATCGACAGCATGCAGAGGGGATCGGGCCGATCCCTGGCTT
319 -T----C-GT--G---A-CAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCC-GACTT
* * * * * * * *
13807338 GCACATTCTGCCTCTTTGGCTGACTGAGCGGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
371 GCGCATTCTGCCTCTATGGC-GGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATA
* * *
13807403 CGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCATCGGGACTGGCAGCATG
435 AGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGAGGGTTGTGGCAGCGGGACTGGCAGCACG
* * * * * * * * *
13807468 CAGAAGGGGATTGGGCCGATCCTTGTCGTGCTCATTATTCCTCT-TCGACTGGCTCAGCACCTGC
499 CAGAAGGGGATCGGGTCGATCCTCGTCTTACGCATTATACCTCTCT-GTCTGGCTCAGCATCTGC
* * * *** *
13807532 ACGCTCGTTTCGTGGGTTGACTTAGGAATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGGCC
563 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CATACT
* * * * * * *** * *
13807597 GAGGGTTGCGACAGTAGGATCGATAGCATGTAGGGGGGATCGAACCGATCCCCGGCTTGCGCATT
627 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGAGGATCGGGTCGATCCTCGACTTGCGCATT
* * * * * *
13807662 CTGCCTCCCCAACCGGCTGAGCACCCGCACTCTCCTTTCATGGGTTGGCTTAGGCATACGGAGTT
692 CTGCCTCTCCAACCGGTTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
* *
13807727 CATTCCATATCTAAGCATATGGAGTTCG-TTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGC
757 CATTCCATGTCTAAGCATACGGAGTT-GATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGC
* *
13807790 GACAGCAGGACCAGCAGCAAGATCGATAGC
820 -ACAGCAGGACCAGCAGC-AGATCCACAGC
* **
13807820 ACGTAGGAGGGACCGGGTCGAT-CCTCAGCTTGCGCATTCTGCCTCTCCGGCCGATTGAGCACCC
1 A-G-AGGAGGGACC-GGTCGATCCCTCA-CTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCC
* *
13807884 GCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCAAGTCTAAGCCCCAG-CTGG
62 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGTC-GG
* * * * *
13807948 ACCGAGGGTTTTGGTAGTCGGACCAGCAGCGGGA-TCGGCAGCACACAGAGGGCGACCGGGTTGA
126 ACCGAGGG---T--T-GT-GG--CATCA---GGACTAGGCAGCA-GCAGAGGGGGACCGGGCTGA
* * *
13808012 TCC-CTGACTTACGCATTATAACTCTTCAATCGGCCTCTCCGGTCGGTTGAGTGCCCGCACA-CT
178 TCCTC-GACTTACGC------A---TT--AT--GCCTCTCCGGTCGGCTGAGCGCCCACA-AGCT
* * * * *
13808075 CATTTTGTGGGTTGACTTAGGCATACGGTGTTCACCCCCAGTCTAAGCATACAGAGTTCATTCCT
228 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * **
13808140 AG-CTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGACCAAA
293 AGTCTAAGATCGGACCGGATCGAGGGTCGTGACAGCAGGATCGACAGCACGCAGGGGGGATC-GG
* * * * * * * * *
13808204 GCCGATCCCCAGCTTGCGTATTCTTCCTCTCTAGCCGGCTGAGCGTCGGTATGCCCATTTCATTG
357 GCCGATCCCGA-CTTGCGCATTCTGCCTCTAT-GGCGGCTGAGCGCCCGCATGCCCATTTCATGG
* * * * **
13808269 GTTGGCTTAGGCATAAGGAGTTTATTCCATGTCT-AGCCCCAACCCGAACGAGGGTTGCGATAGC
420 GTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC-AGCCGGACGAGGGTTGTGGCAGC
* * * * * * * *
13808333 GGGACCGACAGCACGCAGAACGGGACCGGGTCAATCCCCGTCTTATGCATTATACCTCTCCAGTC
484 GGGACTGGCAGCACGCAGAAGGGGATCGGGTCGATCCTCGTCTTACGCATTATACCTCT-CTGTC
* * * * *
13808398 -GGCTCAACGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
548 TGGCTCAGCATCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
13808462 AGATCGGACTTGA-TCGAAGATTGCGGTAGCAAGATCGACAGCACGCA-GGAGGGATCGGGTCGA
613 AGATCGGACAT-ACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGA-GGATCGGGTCGA
* * *** * * * *
13808525 T-CTCCAGCTTACGCATTCTGCCTCTCCTTTCGATTCAGCGCCTGCACACTCGTTTCGTGGGTTG
675 TCCTCGA-CTTGCGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACACTCATTTCGTGGGTTG
* *
13808589 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
739 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGA
* * *
13808654 CCAGACTGAGGGTTGCAGTAGCAGGATC-G-A-CAG---CACA-C
804 CCGGACTGAGGGTTGCA-CAGCAGGACCAGCAGCAGATCCACAGC
* * * **
13808692 AGAGG-GGGACCGAGCCGATCCCTTACTTGCACATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCA
1 AGAGGAGGGACCG-GTCGATCCCTCACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCA
* * * * *
13808756 CGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAGTCGGACTG
65 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGACCG
* *
13808821 AGGGTTGTGGCAGT-AGGACCGGTAACGGGATCGACAGAACACAGAGGGGGACCGAGCTGATCCT
130 AGGGTTGTGGCA-TCAGGA-C--T-A-GGCA--G-CAG----CAGAGGGGGACCGGGCTGATCCT
* * * * *
13808885 CGGCTTACGCATTATGCCTCTCCGGTCGACTGAGCGCCCACAAGCTCGTTTTGTGGGTTGAATTA
182 CGACTTACGCATTATGCCTCTCCGGTCGGCTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTA
*
13808950 GGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGCATCAGACCGG
247 GGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGG
* *
13809014 ATCGAGGGTCGTGACAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTGCGC
311 ATCGAGGGTCGTGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCC-CGACTTGCGC
* ** *
13809079 ATTCTGCCTCTATGGTCGGCTGAGCGCCCCCATGCCCATTTCATGGGTTGTTTTAGGCATAGGGA
375 ATTCTGCCTCTATGG-CGGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAAGGA
* *
13809144 GTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACTGGTAGCACGCA-A
439 GTTCATTCCATGTCTAAGCCCCAGCCGGAC-GAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGA
* *
13809208 AGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCTCTCTGTCTGGCTCAGCATCTGCACGC
503 A-GGGGATCGGGTCGATCCTCGTCTTACGCATTATACCTCTCTGTCTGGCTCAGCATCTGCACGC
* *
13809273 TCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCATACTGAGG
567 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CATACTGAGG
* *
13809338 GTTGCGGCAGCAGGATCGACAGCACGCAGGGAGGACCGGGTCGGTCCTCGACTTGCGCATTCTGC
631 GTTGCGGCAGCAGGATCGACAGCACGCAGGGAGGATCGGGTCGATCCTCGACTTGCGCATTCTGC
* * * * *
13809403 CTTTTCGACCGGTTGAGTGCCCGCACGCTCATCTT-GTGGGTTGGCTTAGGCATACGGAGTTCAT
696 CTCTCCAACCGGTTGAGCGCCCGCACACTCAT-TTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* *
13809467 TCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAAACCGGACTGAGGCTTGCTACAG
760 TCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC-ACAG
13809532 CAGGACCAGCAGCATGATCCACAGC
824 CAGGACCAGCAGCA-GATCCACAGC
** * *
13809557 ATGCAGGAGGGACCAGGTCGATCCCTCGACTTATGCATTCTGCCTCTCCGACTGGCTGAACACCC
1 A-G-AGGAGGGACC-GGTCGATCCCTC-ACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCC
* * * *
13809622 GGACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
62 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGA
* * *
13809687 CCGAGGGTTGTGGCATCAGGACT-GGCAGCATGTAGAGGGGGACCGGGTCT-ATCCTCGTCTTGC
127 CCGAGGGTTGTGGCATCAGGACTAGGCAGCA-GCAGAGGGGGACCGGG-CTGATCCTCGACTTAC
* * * * * * * * *
13809750 GCATTCTTCCTCTTCGGTTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATG
190 GCATTATGCCTCTCCGGTCGGCTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACG
*
13809815 GAGTTCATTCCCAGTCTAAG
255 GAGTTCATCCCCAGTCTAAG
13809835 ATTGGATCAG
Statistics
Matches: 1621, Mismatches: 295, Indels: 205
0.76 0.14 0.10
Matches are distributed among these distances:
855 2 0.00
856 179 0.11
857 444 0.27
858 18 0.01
859 1 0.00
860 9 0.01
861 4 0.00
862 2 0.00
863 9 0.01
864 6 0.00
865 4 0.00
866 11 0.01
867 100 0.06
868 20 0.01
869 238 0.15
870 10 0.01
871 1 0.00
872 3 0.00
873 3 0.00
874 2 0.00
876 4 0.00
877 1 0.00
878 1 0.00
879 23 0.01
880 328 0.20
881 87 0.05
882 2 0.00
884 1 0.00
886 2 0.00
889 2 0.00
891 2 0.00
892 21 0.01
893 78 0.05
894 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (847 bp):
AGAGGAGGGACCGGTCGATCCCTCACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCAC
GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGACCGA
GGGTTGTGGCATCAGGACTAGGCAGCAGCAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTA
TGCCTCTCCGGTCGGCTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTCGTGAC
AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCGACTTGCGCATTCTGCCTCTATGGC
GGCTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
GCCCCAGCCGGACGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGATCGGGTCGATCC
TCGTCTTACGCATTATACCTCTCTGTCTGGCTCAGCATCTGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACATACTGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGAGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCAACCGGTTGAGCGC
CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
TTGATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCACAGCAGGACCAGCAGCAGATCCACA
GC
Found at i:13809851 original size:159 final size:158
Alignment explanation
Indices: 13809540--13809981 Score: 390
Period size: 159 Copynumber: 2.8 Consensus size: 158
13809530 AGCAGGACCA
* * ** * * * **
13809540 GCAGCATGATCCACAGCATGCAGGAGGGACCAGGTCGATCCCTCGACTTATGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACACAGGGGGGACCGGGTCGATCCC-CGGCTTGCGCATTCTGCCT-TC
* * * * **
13809605 C-GACTGGCTGAACACCCGGACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
64 CAG-CCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* **
13809668 TGTCTAAGCCCCAGTCGGACCGAGGGTTGTG
128 TGTCTAAGCCCCAGTCAGACCGAGGGTTACG
* * *** * * * *
13809699 GCATCAGGA-CTGGCAGCATGTAGAGGGGGACCGGGTCTATCCTCGTCTTGCGCATTCTTCCTCT
1 GCAGCAGGATC-GACAGCACACAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCT-T
* * ** * *
13809763 TCGGTTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA
63 CCAGCCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
**** *
13809828 -GTCTAAG-ATTGGATCAGATCGAGGGTTACG
128 TGTCTAAGCCCCAG-TCAGACCGAGGGTTACG
* * *
13809858 GTAGCAGGATCGATAGCACACAGGGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTTCCA
1 GCAGCAGGATCGACAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTCCA
* * *
13809923 GCCGGCTGAGCACCCGTACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
66 GCCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
13809982 TATATCTAAA
Statistics
Matches: 226, Mismatches: 51, Indels: 14
0.78 0.18 0.05
Matches are distributed among these distances:
157 54 0.24
158 35 0.15
159 117 0.52
160 20 0.09
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
GCAGCAGGATCGACAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTCCA
GCCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGT
CTAAGCCCCAGTCAGACCGAGGGTTACG
Found at i:13813289 original size:158 final size:159
Alignment explanation
Indices: 13813029--13813497 Score: 523
Period size: 158 Copynumber: 3.0 Consensus size: 159
13813019 AAGATCGAAC
* *
13813029 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTG
1 CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTG
* * * * * * *
13813094 TGCATTCTACCTCTTCGGCCTGCTGAGCGCCCACACGCCCATTTCATGGATTGGCTTAGGCATAG
66 CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
*
13813159 GGAGTTCATTCCATGTCTAAGCCCCAG-T
131 GGAGTTCATTCCATGTCTAAGCACCAGAT
* ** *
13813187 CGGACTGAGGGTTGTGGCAGTGGGATCGA-AGCACGCAGAGGGGGATCGACCCGATCCCCGGCTT
1 CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTT
* * ** * * * * * *
13813251 GCGCATTATGCCTCTCCGGTAGGCTCAACGCCTGCACGCTCATTTCGTGGGTTGACTTAGCCATA
65 GCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
* * *
13813316 CGGATTTCATTCCCA-GTCTAAG-ATCGGAT
130 CGGAGTTCATT-CCATGTCTAAGCACCAGAT
* * * * * * *
13813345 CAGACTGAGGGTTGCGACAGCAAGATCGACAGCACACAGGGGGGATCGGGCTGATCCCTGGCTTG
1 CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTG
* * * * ** *
13813410 CACATTCTGCCCCTTTGGCCGGCTGAGCGCCCGCATGCTTGTTTCATGGGCTGGCTTAGGCATAC
66 CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
13813475 GGAGTTCATTCCATGTCTAAGCA
131 GGAGTTCATTCCATGTCTAAGCA
13813498 TGCAGAGTTC
Statistics
Matches: 249, Mismatches: 56, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
157 14 0.06
158 223 0.90
159 12 0.05
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTG
CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCACCAGAT
Found at i:13813855 original size:26 final size:26
Alignment explanation
Indices: 13813825--13813877 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13813815 GTTGACTTAG
13813825 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13813851 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13813877 G
1 G
13813878 ATCAAACCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13813877 original size:356 final size:353
Alignment explanation
Indices: 13813359--13814556 Score: 1167
Period size: 356 Copynumber: 3.4 Consensus size: 353
13813349 CTGAGGGTTG
** * * * *
13813359 CGACAGCAAGATCGACAGCACACAG-GGGGGATCGGGCTGATCCCTGGCTTGCACATTCTGCCCC
1 CGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTC
** ** ** * * * * *
13813423 TTTGGCCGGCTGAGCGCCCGCATGCTTGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCA
66 TCCGATCGGCTGAGTACCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA
* * *
13813488 TGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGG
131 -GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGG
* * * * *
13813553 ATCGACAACACGTATGGGGGGACTGGGCCGATCCCCGACTAGTGCATTTTACCTCTTCGACCGGC
194 ATCGGCAGCACGCA-GGGGGGACTGGGCCGATCCCCGACTAGTGCATTCTGCCTCTTCGACCGGC
* ** * * *
13813618 TGAGCGCCCGCACACTTGTTTTGTGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGCC
258 TGAGCGCCCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* *
13813683 CCAGCCAGATCGAGGGTTGTGGTAGCAGAAC
323 CCAGCCGGATCGAGGGTTGTGGCAGCAGAAC
* * * * *
13813714 CGGCAGCGGGATTGGCAGCACGCAGAGGGGGATCGGGTTGATCCCTGGCTTGCGCAATATGCCTC
1 CGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTC
* *
13813779 TCCGATCGGCTGAGTACTCGCACGCTTTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCT
66 TCCGATCGGCTGAGTACCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-
* * * * *
13813844 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCTGACCAAGGGTTACGGCA-CAGG
130 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGG
** * * * * * **
13813908 ATCGGCAGCACGCAGGGGGGACCAGGCCAATCCTCGGCTTA-CGCATTCTGCCTTTTCGGTCGGC
194 ATCGGCAGCACGCAGGGGGGACTGGGCCGATCCCCGAC-TAGTGCATTCTGCCTCTTCGACCGGC
*
13813972 TGAGCG-CCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCG
258 TGAGCGCCCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * *
13814036 CCAACCGGA-CTGAGGGTTGTGGCAGTAGGAC
323 CCAGCCGGATC-GAGGGTTGTGGCAGCAGAAC
* * ** *
13814067 CGACAGCGGGATCGACAGCACGCAGATGAGGATCGGGCTGATCCCCAGCTTACGCATTATGCCTC
1 CGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTC
* * * * *
13814132 TCCGATCGGCCTCTCCAATTGGCTGAGCGCCCGCGCGCTCATTTCGTGGGTTGACATAGGCATAC
66 TCCGATCGG---CT--GA---G-T-A---CCCGCACGCTTATTTCATGGGTTGACTTAGGCATAC
* * * *
13814197 GGAGTTCATCCCCAGTGTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGG
118 GGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGG
* *
13814262 TTGCGGTAGCAGGATTGGCAGCACGCAGGGGGGA-TCGGGCCGATCCCC-AGCTTGTGCATTCTG
181 TTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGACT-GGGCCGATCCCCGA-CTAGTGCATTCTG
* * * * *
13814325 CCTCTCCGACCGACTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
244 CCTCTTCGACCGGCTGAGCGCCCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
13814390 TCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGT---------A-
309 TCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAGAAC
* * * * * *
13814425 -G-CAGTGGGACCGACAGCACACAGAGAGGGATCGGGCCGAT-CCTCGGCTTGTGCATTATGCCT
1 CGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCT-GGCTTGCGCATTATGCCT
* * *** ** ** *
13814487 CTTCGATCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTCTGCATACAGAGTTCATTCC
65 CTCCGATCGGCTGAGTACCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCC
13814552 CAGTC
129 CAGTC
13814557 GAAGATCGGA
Statistics
Matches: 691, Mismatches: 125, Indels: 66
0.78 0.14 0.07
Matches are distributed among these distances:
343 43 0.06
344 1 0.00
351 1 0.00
352 1 0.00
353 141 0.20
354 42 0.06
355 38 0.05
356 195 0.28
357 2 0.00
358 1 0.00
359 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
365 1 0.00
366 89 0.13
367 59 0.09
368 72 0.10
369 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (353 bp):
CGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTC
TCCGATCGGCTGAGTACCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGTAGCAGGAT
CGGCAGCACGCAGGGGGGACTGGGCCGATCCCCGACTAGTGCATTCTGCCTCTTCGACCGGCTGA
GCGCCCGCACGCCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
GCCGGATCGAGGGTTGTGGCAGCAGAAC
Found at i:13814130 original size:353 final size:360
Alignment explanation
Indices: 13813438--13814441 Score: 1164
Period size: 353 Copynumber: 2.8 Consensus size: 360
13813428 CCGGCTGAGC
* * * * * * *
13813438 GCCCGCATGCTTGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATGCAG
1 GCCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGG
* * * * *
13813503 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAACACGTAT
65 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCA-
* * * * *
13813568 GGGGGGACTGGGCCGATCCCCGAC-TAGTGCATTTTACCTCTTCGACCGGCTGAGCGCCCGCACA
129 GGGGGGACCGGGCCGATCCCCGGCTTA-TGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACG
** * * * *
13813632 CTTGTTTTGTGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAG
193 CCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
* * * * * * * * **
13813697 GGTTGTGGTAGCAGAACCGGCAGCGGGATTGGCAGCACGCAGAGGGGGATCGGGTTGATCCCTGG
258 GGTTGTGGCAGTAGGACCGACAGCGGGATCGACAGCACGCAGAGGAGGATCGGGCTGATCCCCAG
* *
13813762 CTTGCGCAATATGCCTCTCCGATCGG-CT-GA-G-T-A
323 CTTACGCAATATGCCTCTCCGATCGGCCTCAATGCTGA
* *
13813795 -CTCGCACGCTTTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGG
1 GCCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATACGG
* * * * *
13813859 AGTTCATTCCCAGTCTAAGATCAAACCTGACCAAGGGTTACGGCA-CAGGATCGGCAGCACGCAG
65 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG
* * * * * **
13813923 GGGGGACCAGGCCAATCCTCGGCTTACGCATTCTGCCTTTTCGGTCGGCTGAGCG-CCGCACGCC
130 GGGGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCC
* *
13813987 AGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCCAACCGGA-CTGAGG
195 AGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC-GAGG
*
13814051 GTTGTGGCAGTAGGACCGACAGCGGGATCGACAGCACGCAGATGAGGATCGGGCTGATCCCCAGC
259 GTTGTGGCAGTAGGACCGACAGCGGGATCGACAGCACGCAGAGGAGGATCGGGCTGATCCCCAGC
*
13814116 TTACGCATTATGCCTCTCCGATCGGCCTCTCCAATTGGCTGA
324 TTACGCAATATGCCTCTCCGATCGG-C-CT-CAA-T-GCTGA
* * * * * *
13814158 GCGCCCGCGCGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTGTAAGCATAT
1 --GCCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATAC
* * * *
13814223 GGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATTGGCAGCACGC
63 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
* * * * * *
13814288 AGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGACTAAGCGCCCGCACG
128 AGGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACG
* *
13814353 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
193 CCAGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
* *
13814418 GGTTGTAGCAGTGGGACCGACAGC
258 GGTTGTGGCAGTAGGACCGACAGC
13814442 ACACAGAGAG
Statistics
Matches: 540, Mismatches: 87, Indels: 29
0.82 0.13 0.04
Matches are distributed among these distances:
352 1 0.00
353 139 0.26
354 42 0.08
355 17 0.03
356 95 0.18
357 1 0.00
358 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
366 89 0.16
367 63 0.12
368 88 0.16
369 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (360 bp):
GCCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGG
GGGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCCA
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGT
TGTGGCAGTAGGACCGACAGCGGGATCGACAGCACGCAGAGGAGGATCGGGCTGATCCCCAGCTT
ACGCAATATGCCTCTCCGATCGGCCTCAATGCTGA
Found at i:13814243 original size:26 final size:26
Alignment explanation
Indices: 13814191--13814243 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13814181 GTTGACATAG
*
13814191 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13814217 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13814243 G
1 G
13814244 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13814696 original size:158 final size:158
Alignment explanation
Indices: 13814217--13814718 Score: 543
Period size: 158 Copynumber: 3.2 Consensus size: 158
13814207 CCCAGTGTAA
* * * * * *
13814217 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGA-CTGAGGGTTGCGGTAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCAGGATCGAC
* * * *
13814281 AGCACGCAGGGGGGATCGGGCCGATCCCC-AGCTTGTGCATTCTGCCTCTCCGACCGACTAAGCG
65 AGCACACAGGGGGGATCGGGCCGATCCCCGA-CTTGTGCATTCTGCTTTTCCGACCGGCTAAGCG
*
13814345 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** ** ** *
13814375 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGATCGAGGGTTGTAGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
13814438 CAGCACACAGAGAGGGATCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTT-CGATCGGCTCAA
64 CAGCACACAG-GGGGGATCGGGCCGATCCCCGACTTGTGCATTCTG-CTTTTCCGACCGGCT-AA
* **
13814502 -CGCCCGCACGCTCGTTTCATGGGTTGACTTCT
126 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
13814534 GCATACAGAGTTCATTCCCAGTCGAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* *
13814599 GCACACAGGGGGGA-CTGGGTCGATCCCCGACTTGTGCATTCTGCTTTTCCGACCGGCTGAGCGC
66 GCACACAGGGGGGATC-GGGCCGATCCCCGACTTGTGCATTCTGCTTTTCCGACCGGCTAAGCGC
*
13814663 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
13814692 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13814719 CAAATGGAGT
Statistics
Matches: 276, Mismatches: 55, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
157 13 0.05
158 135 0.49
159 119 0.43
160 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACACAGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCTTTTCCGACCGGCTAAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13816496 original size:26 final size:26
Alignment explanation
Indices: 13816466--13816518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13816456 GTTGGCTTAG
13816466 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
13816492 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13816518 G
1 G
13816519 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13816628 original size:184 final size:184
Alignment explanation
Indices: 13816308--13816677 Score: 474
Period size: 184 Copynumber: 2.0 Consensus size: 184
13816298 GTTGACTTAG
* * *
13816308 GCATACGGAGTTCATTCCTAGTCTAAGACCGAATCGGACTGAGGGTTACGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGACAGAATCAGACCGAGGGTTACGGTAGCAAGATCGACA
* ** * *
13816373 GCACGCAGGGGGGATCGGGTTGGTCCCCGACTTACGCATTCTACCTCTCTGGCCAACTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCACGACTTACGCATTCTACCTCTCTGGCCAACTGAGCACC
* *
13816438 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAA
* ** *
13816492 GCATATGGAGTTCATTCCTAGTCTAAGATCAG-ATCAGACCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGA-CAGAATCAGACCGAGGGTTACGGTAGCAAGATCGAC
* * * * * * * * ** *
13816556 AGTATGCAGGGGGGACCGGGCCGATCCACGGCTTGCGTATTCTGCCTTTTCT-GTCGGCTGAGCG
65 AGCACGCAGGGGGGACCGGGCCGATCCACGACTTACGCATTCTACC-TCTCTGGCCAACTGAGCA
*
13816620 CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAA
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAA
13816676 GC
1 GC
13816678 CCTAGTCGGA
Statistics
Matches: 158, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 152 0.96
185 6 0.04
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCTAGTCTAAGACAGAATCAGACCGAGGGTTACGGTAGCAAGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCACGACTTACGCATTCTACCTCTCTGGCCAACTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAA
Found at i:13816957 original size:26 final size:26
Alignment explanation
Indices: 13816919--13816969 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13816909 TTGACTTAGG
13816919 CATACGAAATTCATCCCCAGTTTAAC
1 CATACGAAATTCATCCCCAGTTTAAC
* * *
13816945 CATACGGAGTTCATTCCCAGTTTAA
1 CATACGAAATTCATCCCCAGTTTAA
13816970 GTTTGAACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACGAAATTCATCCCCAGTTTAAC
Found at i:13817296 original size:26 final size:26
Alignment explanation
Indices: 13817260--13817312 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13817250 GTTGGCTTAG
*
13817260 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13817286 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13817312 G
1 G
13817313 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13818326 original size:159 final size:159
Alignment explanation
Indices: 13818131--13818485 Score: 380
Period size: 159 Copynumber: 2.2 Consensus size: 159
13818121 TGATTTTGTG
* * * *
13818131 GGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGACCCA-G-CCAGATCGAGGGTTGTGGC
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA--CAGGACCAGACCAAGGGTTGTGGC
* * * * * *
13818194 AGCGGGA-CTGACAGCACATAGAGG-GGGATCGAGTCGATCCCCGGCTTATGCATTATTCCTCTC
64 AGCAGGATC-GACAGCACATAG-GGCAGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTC
*
13818257 CGATCGGCTCAGC-ACCCGCACACTCATTTCGTA
127 CGATCGGCTCAGCGA-CCGCACACTCATTTCATA
* * * *
13818290 GGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATAGGACCGGACCAAGGGTTGTGGCA
1 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACAGGACCAGACCAAGGGTTGTGGCA
* * * * * * *
13818354 GCAGGATCGACAGCACGTAGGGCAGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTTCGG
65 GCAGGATCGACAGCACATAGGGCAGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGA
* * *
13818419 TCGGCTGAGCGACCGCACGCTCATTTCATG
130 TCGGCTCAGCGACCGCACACTCATTTCATA
*
13818449 GGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13818486 CCATATGGAG
Statistics
Matches: 161, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
157 1 0.01
158 6 0.04
159 149 0.93
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACAGGACCAGACCAAGGGTTGTGGCAG
CAGGATCGACAGCACATAGGGCAGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGAT
CGGCTCAGCGACCGCACACTCATTTCATA
Found at i:13818495 original size:26 final size:26
Alignment explanation
Indices: 13818461--13818511 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13818451 CTGGCTTAGG
13818461 CATACGGAGTTCATTC-CATGTCTAAC
1 CATACGGAGTTCATTCTCAT-TCTAAC
* *
13818487 CATATGGAGTTCTTTCTCATTCTAA
1 CATACGGAGTTCATTCTCATTCTAA
13818512 GATCGGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (26 bp):
CATACGGAGTTCATTCTCATTCTAAC
Found at i:13818698 original size:26 final size:26
Alignment explanation
Indices: 13818662--13818712 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13818652 TGGCTTAGGC
13818662 ATACAGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
13818688 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13818713 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:13819206 original size:159 final size:158
Alignment explanation
Indices: 13818749--13819435 Score: 510
Period size: 159 Copynumber: 4.4 Consensus size: 158
13818739 ACAGGATCGA
** * *
13818749 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGA-TCGAGGGTTATGGCAGCAGGACCGGTA
1 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACT-GAGGGTTGTGGCAGCAGGACTGGTA
* * * * * * * * **
13818813 GCACGGAGGGGGGATCGGGCTGATCCCTGGCATGCACATTATGGCTCTTCAGTCGGCTCAGTGCC
65 GCACGCAGGGGGGACCGGGCGGATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCACC
* *
13818878 CGCACACTCGTTTCATGAGTTGACGTATGG
130 CGCACACTCGTTTCATGGGTTGACTTA-GG
* * **** * * * *
13818908 -ATATGGAGTTCATTCCCA-ATCTAAGATTGGACCA-GACCGAGGGTTGCGG-AGCAGGA-TCGA
1 CATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCAGGACTGAGGGTTGTGGCAGCAGGACT-GG
* * * * * * ** * **
13818968 TAGCATGCAGGAGGGACCGGGCGGATCCCCGACTTACGCATTCTGCCTCTTTGACCGGTTGGGCA
63 TAGCACGCAGGGGGGACCGGGCGGATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCA
* *
13819033 CCCGCACACCCGTTTCATGGGTTGGCTTAGG
128 CCCGCACACTCGTTTCATGGGTTGACTTAGG
* * *
13819064 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGTAGCAAGACTGGCAG
1 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGCAGCAGGACTGGTAG
* * **
13819129 CACGCAGAGGGGGACCGGGTC-GATCCCCT-GCTTATGCATTATGCCTCTTCGGTCAGCTCAGTG
66 CACGCAG-GGGGGACCGGG-CGGAT-CCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCA
*
13819192 CCCGCACACTCGTTTCATGGGTTGACTTATG
128 CCCGCACACTCGTTTCATGGGTTGACTTAGG
** ** * * * * * *
13819223 CATACAGAGTTCATTCCCA-GTCTAAGATCAAACCGGA-TCGAGGGTTGCGGCAGTAGGA-TCGA
1 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCAGGACT-GAGGGTTGTGGCAGCAGGACT-GG
* * * *
13819285 TAGCACGCAGGGGGGACCGGGTC-GATCCCTGGCTTGCGCATTCTGCCTC-TCTGGTCGGCTGAC
63 TAGCACGCAGGGGGGACCGGG-CGGATCCCTGGCTTACGCATTATGCCTCTTC-GGTCGGCTCAG
* * * * *
13819348 CACCTGTACGCTCATTTCATGGGTTGGCTT---
126 CACCCGCACACTCGTTTCATGGGTTGACTTAGG
* *
13819378 -ATATGGAGTTGATTCCATGTCTAAGCCCCAGCCA-GACTGAGGGTTGTGGCAGCAGGAC
1 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGGACTGAGGGTTGTGGCAGCAGGAC
13819436 CGGCAGCGGA
Statistics
Matches: 402, Mismatches: 105, Indels: 46
0.73 0.19 0.08
Matches are distributed among these distances:
153 3 0.01
154 39 0.10
155 2 0.00
156 8 0.02
157 115 0.29
158 109 0.27
159 119 0.30
160 7 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGCAGCAGGACTGGTAG
CACGCAGGGGGGACCGGGCGGATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCACCC
GCACACTCGTTTCATGGGTTGACTTAGG
Found at i:13819379 original size:158 final size:155
Alignment explanation
Indices: 13818800--13819379 Score: 459
Period size: 157 Copynumber: 3.7 Consensus size: 155
13818790 GGGTTATGGC
* * * * * * * * * *
13818800 AGCAGGACCGGTAGCACGGAGGGGGGATCGGG-CTGATCCCTGGCATGCACATTATGGCTCTTCA
1 AGCAGGATCGATAGCACGCAGGGGGGACCGGGTC-GATCCCTGGCTTACGCATTCTGCCTCTT-G
* ** * * * * ** *
13818864 GTCGGCTCAGTGCCCGCACACTCGTTTCATGAGTTGACGTATGGATATGGAGTTCATTCCCAATC
64 GTCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTATGCATACAGAGTTCATTCCCAGTC
*** *
13818929 TAAGATTGGACCAGACCGAGGGTTGCGG
129 TAAGATCAAACCGGA-CGAGGGTTGCGG
* * * *
13818957 AGCAGGATCGATAGCATGCAGGAGGGACCGGG-CGGATCCCCGACTTACGCATTCTGCCTCTTTG
1 AGCAGGATCGATAGCACGCAGGGGGGACCGGGTC-GATCCCTGGCTTACGCATTCTGCCTC-TTG
** * * * * **
13819021 ACCGGTTGGGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGT
64 GTCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTATGCATACAGAGTTCATTCCCA-GT
** * * * *
13819085 CTAAGCCCCAGCAGGACTGAGGGTTGTGG
128 CTAAGATCAAACCGGAC-GAGGGTTGCGG
* ** * *
13819114 TAGCAAGA-CTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCT-GCTTATGCATTATGCCTCT
1 -AGCAGGATC-GATAGCACGCAG-GGGGGACCGGGTCGAT-CCCTGGCTTACGCATTCTGCCTCT
* * ** *
13819177 TCGGTCAGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA
62 T-GGTCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTATGCATACAGAGTTCATTCCCA
13819242 GTCTAAGATCAAACCGGATCGAGGGTTGCGG
126 GTCTAAGATCAAACCGGA-CGAGGGTTGCGG
* *
13819273 CAGTAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTG
1 -AGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCT-TG
* * * * *
13819338 GTCGGCTGACCACCTGTACGCTCATTTCATGGGTTGGCTTAT
64 GTCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAT
13819380 ATGGAGTTGA
Statistics
Matches: 324, Mismatches: 85, Indels: 27
0.74 0.19 0.06
Matches are distributed among these distances:
156 4 0.01
157 114 0.35
158 84 0.26
159 113 0.35
160 9 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (155 bp):
AGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTTGGT
CGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTA
AGATCAAACCGGACGAGGGTTGCGG
Found at i:13819543 original size:325 final size:312
Alignment explanation
Indices: 13818750--13819580 Score: 798
Period size: 316 Copynumber: 2.6 Consensus size: 312
13818740 CAGGATCGAC
** * * * **
13818750 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGA-TCGAGGGTTATGGCAGCAGGACCGGTAG
1 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACT-GAGGGTTGTGGCAGCAAGACTGACAG
* * * * * * * * *
13818814 CACGGAG-GGGGGATCGGG-CTGATCCCTGGCATGCACATTATGGCTCTTCAGTCGGCTCAGTGC
65 CACGCAGAGGGGGACCGGGTC-GATCCCCGGCTTACGCATTATGCCTCTTCAGCCAGCTCAGTGC
* * * * ***
13818877 CCGCACACTCGTTTCATGAGTTGACGTATGGATATGGAGTTCATTCCCAATCTAAGATTGGACCA
129 CCGCACACTCGTTTCATG-GTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCA
*
13818942 GACCGAGGGTTGCGGAGCAGGATCGATAGCATGCAGGAGGGACCGGGCGGATCCCCGACTTACGC
193 GACCGAGGGTTGCGGAGCAGGATCGATAGCACGCAGGAGGGACCGGGCGGATCCCCGACTTACGC
* * ** *
13819007 ATTCTGCCTCTTTGACCGGTTGGGCACCCGCACACCCGTTTCATGGGTTGGCTTAGG
258 ATTCTGCCTCTCTGACCGGCTGACCACCCGCACACCCATTTCATGGGTTGGCTT--G
* *
13819064 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGTAGCAAGACTGGCAG
1 -ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGCAGCAAGACTGACAG
* * * *
13819129 CACGCAGAGGGGGACCGGGTCGATCCCCTGCTTATGCATTATGCCTCTTCGGTCAGCTCAGTGCC
65 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTTCAGCCAGCTCAGTGCC
* *
13819194 CGCACACTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGG
130 CGCACACTCGTTTCAT-GGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG
* * * * * *
13819259 ATCGAGGGTTGCGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGTC-GATCCCTGGCTTGCG
194 ACCGAGGGTTGCGG-AGCAGGATCGATAGCACGCAGGAGGGACCGGG-CGGATCCCCGACTTACG
** * * * *
13819323 CATTCTGCCTCTCTGGTCGGCTGACCACCTGTACGCTCATTTCATGGGTTGGCTT-
257 CATTCTGCCTCTCTGACCGGCTGACCACCCGCACACCCATTTCATGGGTTGGCTTG
* *
13819378 ATATGGAGTTGATTCCATGTCTAAGCCCCAGCCA-GACTGAGGGTTGTGGCAGCAGGACCGGCAG
1 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGGACTGAGGGTTGTGGCAGCA--A---G-A-
* ** *
13819442 CGGAATCGACAGCACGCAGAGGGGGATCGGG-CTGATCTTCGGCTTGCGCATTATGCCT-TTCTA
58 C----T-GACAGCACGCAGAGGGGGACCGGGTC-GATCCCCGGCTTACGCATTATGCCTCTTC-A
* ** ** * *
13819505 GCCAGTTGTGTGCCCGCACGTTTGTTTCATCGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGT
116 GCCAGCTCAGTGCCCGCACACTCGTTTCAT-GGTTGACTTATGCATACGGAGTTCATTCCC-AGT
13819569 CTAAGATACAAA
179 CTAAGAT-CAAA
13819581 GTTCATTCCC
Statistics
Matches: 427, Mismatches: 66, Indels: 35
0.81 0.12 0.07
Matches are distributed among these distances:
313 48 0.11
314 2 0.00
315 62 0.15
316 113 0.26
317 87 0.20
318 2 0.00
319 1 0.00
320 1 0.00
324 9 0.02
325 98 0.23
326 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (312 bp):
ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGCAGCAAGACTGACAGC
ACGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTTCAGCCAGCTCAGTGCCC
GCACACTCGTTTCATGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
CGAGGGTTGCGGAGCAGGATCGATAGCACGCAGGAGGGACCGGGCGGATCCCCGACTTACGCATT
CTGCCTCTCTGACCGGCTGACCACCCGCACACCCATTTCATGGGTTGGCTTG
Found at i:13819880 original size:159 final size:160
Alignment explanation
Indices: 13819627--13820076 Score: 534
Period size: 159 Copynumber: 2.8 Consensus size: 160
13819617 TTGCGATAGA
* * * * *
13819627 AGGATCGCCAGCACACAG-GGGGGACCGGGCCGATCCCTAACTTGCGCATTCTACCTCTCCGGCC
1 AGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACC
* * * *
13819691 GGCTGAGCACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
13819756 GCCCCAGCT-GGACCAAGGGTTGTGGCAAC
131 GCACCAGCTCGGACCAAGGGTTGTGACAAC
* * * * * *
13819785 GGGATCGATAGCACGCAGAGGGGGACCGAGCCGATCCCTGACTTGCGCATTATGCCTCTTCGATC
1 AGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACC
* * * * *
13819850 GGCTCAGCACCTGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCC-TAGTCTC
66 GGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTA
* * * *
13819914 AG-ATCGGCTCGGACCGAGGGTTGTGACAGC
130 AGCACCAGCTCGGACCAAGGGTTGTGACAAC
* * *
13819944 AGGATCGACAGCTCACA-AGGGGGGACC-AGGGCGATCCCCGACTTGCGCATTCTGCCTCTCCGA
1 AGGATCGACAGCACACAGA-GGGGGACCGA-GCCGATCCCTGACTTGCGCATTCTGCCTCTCCGA
* * * *
13820007 CCGGCTGAGCGCCCGCAGGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCT
64 CCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
13820072 AAGCA
129 AAGCA
13820077 TACAGAGTTC
Statistics
Matches: 241, Mismatches: 44, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
158 21 0.09
159 218 0.90
160 2 0.01
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (160 bp):
AGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACC
GGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
GCACCAGCTCGGACCAAGGGTTGTGACAAC
Found at i:13820084 original size:26 final size:26
Alignment explanation
Indices: 13820048--13820100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13820038 GTTAACTTAG
*
13820048 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
13820074 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
13820100 G
1 G
13820101 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:13820189 original size:11 final size:11
Alignment explanation
Indices: 13820173--13820202 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
13820163 AGGGCACCAC
13820173 CGTCGGAGCAT
1 CGTCGGAGCAT
13820184 CGTCGGAGCAT
1 CGTCGGAGCAT
13820195 CGTCGGAG
1 CGTCGGAG
13820203 AGCCTAACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.17, C:0.27, G:0.40, T:0.17
Consensus pattern (11 bp):
CGTCGGAGCAT
Found at i:13821496 original size:26 final size:26
Alignment explanation
Indices: 13821466--13821518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13821456 GTTGGCTTAG
*
13821466 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13821492 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13821518 G
1 G
13821519 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13822215 original size:26 final size:26
Alignment explanation
Indices: 13822185--13822237 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13822175 GTTGACTTAG
13822185 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
13822211 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13822237 G
1 G
13822238 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13822689 original size:158 final size:157
Alignment explanation
Indices: 13822211--13822701 Score: 493
Period size: 159 Copynumber: 3.1 Consensus size: 157
13822201 CCCAGTCTAA
* * *
13822211 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCG-ACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
13822276 GCACGCA-GGGGGATCGGGTCGATCCTCAGCTTGGGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
65 GCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * *
13822340 CACACACCCATTTCATGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * * * * * ** * *
13822368 GCATAGGGAGTTC-TTTCCATGTCTAAGCCCCAGCTGGACTGATGGTTATGGCAGTGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAAC-CGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
13822432 AGCACGT-GGAAGGGGATTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGGCTCAGC
64 AGCACGTAGG--GGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
** * *
13822496 GCCCGCACGCTTGTTTCATGGGTTGACTTAT
127 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
*** * *
13822527 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-GACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
13822592 GCACGTAGGGGGGACCGGGCCGATCCCCGGTTTGCACATTCTGCCTCTCCGGCCGGCTGAGTGTC
65 GCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
*
13822657 CGCACGCTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
*
13822685 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
13822702 TTTGTCTAAG
Statistics
Matches: 258, Mismatches: 68, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
156 4 0.02
157 47 0.18
158 84 0.33
159 116 0.45
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:13823446 original size:26 final size:26
Alignment explanation
Indices: 13823410--13823459 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13823400 GACTTAGGCG
13823410 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
13823436 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
13823460 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:13824474 original size:525 final size:512
Alignment explanation
Indices: 13823484--13824814 Score: 1270
Period size: 525 Copynumber: 2.6 Consensus size: 512
13823474 AAGCGTTGCG
* * *
13823484 ACAGCAGGATTGGCAGCACGTAGGGGGGATCGGACCGATCCCCGACTTACGCATTCTGCCTCTCC
1 ACAGCAGGATTGGCAGCACGTAGGGGGGACCGGA-CGATCCCCGACTTGCGCATTCTGCCTCTTC
* * * *
13823549 GACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGT
65 GGCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * *
13823614 CTAAGCCCTAGCTGGACCGACGGTTGTGGCAGCGAGACCGGTAGCATGCAAAGGGGGATCGAGCC
130 CTAAGCCCCAGCTGGACCGAAGGTTGTGGCAGAGAGACCGGTAGCATGCAAAGGGGGATCGAGCC
* ** *
13823679 GATCCCCAGCCTGCGCATTATGCCTTTCCGATCTGCTCAGTGCCCGCACGCTTATTTCATGGGGT
195 GATCCCCAGCCTGCGCATTATGCCTCTCCGATCTGCTCAGCACCCGCACGCTCATTTCATGGGGT
** * ** *
13823744 GACTTAGGCACACGAAGTTCATTGCCAGTCTAAGATCGGATTGGACCAAAGGTTACAGCAGCAGG
260 GACTTAGGCACACGAAGTTCATCCCCAGTCTAAGATCAGACCGGACCAAAGGCTACAGCAGCAGG
* * * * *
13823809 ATTGACAGCTCGCAGAGGGGACCGGGCCGGTCCTCGGCTTACGCATTCTACCTCTCCAGTCGACT
325 ATCGACAGCACGCAGAGGGGACCGGGCCGGTCCCCGACTTACGCATTCTACCTCTCCAGCCGACT
* * * *
13823874 GAGCACCCGCACGCTCATTTCGTGGGATGGCATAGGCATACGGAGTTCATTCCATGTCTAAGTAG
390 GAGCACACGCACGCTCATTTCGTGGGAGGGCATAGGCATACGGAGTTCATTCCACGTCTAAGCAG
* * * *
13823939 ACGAAGTTCATTCCCAGTCTAAGATCAGACC-GAAATAAGGTTTACGGCAGTC-GGACCA
455 ACGAAGTTCATTCCCAGTCTAAGATCAAACCAG-AACAAGGATTACAGCAG-CAGGACCA
* * *
13823997 ACAGCAAGATTGGCAGCACGTAGGGGGGACCGGATCGATCCCCGGCTTGCGCATTCTGTCTCTTC
1 ACAGCAGGATTGGCAGCACGTAGGGGGGACCGGA-CGATCCCCGACTTGCGCATTCTGCCTCTTC
* *
13824062 GGCCGGCTGAGTACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
65 GGCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
13824127 CTAAGCCCCAG-TCGGGCCGAAGGTTGTGGTAGTAG-GACCGGTAGCGAGATCGGCAAGACGCAG
130 CTAAGCCCCAGCT-GGACCGAAGGTTGTGGCAG-AGAGACCGGTAGC---AT--GC---A---A-
* * * * * *
13824190 AGGGGGATCGGGCTGATCCTC-GACTTGTGCATTATGCCTCTCCGGT-TGGC-CGAGCACCCGCA
181 AGGGGGATCGAGCCGATCCCCAG-CCTGCGCATTATGCCTCTCCGATCT-GCTC-AGCACCCGCA
* * * * * * *
13824252 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTAGACCGGACCG
243 CGCTCATTTCATGGGGTGACTTAGGCACACGAAGTTCATCCCCAGTCTAAGATCAGACCGGACCA
* *** * * *
13824317 AGGGCTGTGGCAGTAGGATCGACAGCACGCA-AGAGGGACTGGGCCGGTCCCCGACTTGCGCATT
308 AAGGCTACAGCAGCAGGATCGACAGCACGCAGAG-GGGACCGGGCCGGTCCCCGACTTACGCATT
* * ** * * * * * *
13824381 TTGCCTCTCTGGCC-AGCTGAGCGCACGCATGCTCATTTTGTGGGCGGGCTTAGGCATATGGAGT
372 CTACCTCTCCAGCCGA-CTGAGCACACGCACGCTCATTTCGTGGGAGGGCATAGGCATACGGAGT
* * * *
13824445 TCATTCCACGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGATTGC
436 TCATTCCACGTCTAAGCAGACGA-AGTTCATTCCCAGTCTAAGATCAAACCAGAACAAGGATTAC
13824509 AGCAGCAGGACCA
500 AGCAGCAGGACCA
* ** * * * * * * *
13824522 GCAATAGGATCGACAGCACATAAGGGGGACCAGG-CGATCCCCGACTTGCGTATTTTACCTC-TC
1 ACAGCAGGATTGGCAGCACGTAGGGGGGACC-GGACGATCCCCGACTTGCGCATTCTGCCTCTTC
* * * * *
13824585 TGGCAGGCTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
65 -GGCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * ** * * * * * *
13824650 TCTAACCCCCAGCCGGAATG-AGCGTTGTGGCAGCAG-GATCGATAGCACGCAAAGGAGGACCGG
129 TCTAAGCCCCAGCTGGACCGAAG-GTTGTGGCAG-AGAGACCGGTAGCATGCAAAGGGGGATCGA
* * * * * * * * *
13824713 GCTGATCCCCGGCTTGCGCATTATGCCACTTCGATC-GACTGAGCGCCCGCACGCTCGTTTTATG
192 GCCGATCCCCAGCCTGCGCATTATGCCTCTCCGATCTG-CTCAGCACCCGCACGCTCATTTCATG
* * * * * *
13824777 GGTTGACATAAGCATACGGAGTTCATTCCCAGTCTAAG
256 GGGTGACTTAGGCACACGAAGTTCATCCCCAGTCTAAG
13824815 GATATGGAGT
Statistics
Matches: 669, Mismatches: 119, Indels: 61
0.79 0.14 0.07
Matches are distributed among these distances:
511 1 0.00
512 94 0.14
513 155 0.23
514 1 0.00
516 3 0.00
518 2 0.00
519 2 0.00
521 2 0.00
523 4 0.01
524 121 0.18
525 281 0.42
526 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (512 bp):
ACAGCAGGATTGGCAGCACGTAGGGGGGACCGGACGATCCCCGACTTGCGCATTCTGCCTCTTCG
GCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCTGGACCGAAGGTTGTGGCAGAGAGACCGGTAGCATGCAAAGGGGGATCGAGCCG
ATCCCCAGCCTGCGCATTATGCCTCTCCGATCTGCTCAGCACCCGCACGCTCATTTCATGGGGTG
ACTTAGGCACACGAAGTTCATCCCCAGTCTAAGATCAGACCGGACCAAAGGCTACAGCAGCAGGA
TCGACAGCACGCAGAGGGGACCGGGCCGGTCCCCGACTTACGCATTCTACCTCTCCAGCCGACTG
AGCACACGCACGCTCATTTCGTGGGAGGGCATAGGCATACGGAGTTCATTCCACGTCTAAGCAGA
CGAAGTTCATTCCCAGTCTAAGATCAAACCAGAACAAGGATTACAGCAGCAGGACCA
Found at i:13824823 original size:26 final size:26
Alignment explanation
Indices: 13824785--13824840 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
13824775 TGGGTTGACA
13824785 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
13824811 TAAGGATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
13824837 TAAG
1 TAAG
13824841 ATCAGACTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:13825289 original size:158 final size:156
Alignment explanation
Indices: 13824820--13825315 Score: 423
Period size: 158 Copynumber: 3.1 Consensus size: 156
13824810 CTAAGGATAT
** * *
13824820 GGAGTTCATTCCCA-GTCTAAGATCAGACTAGACCAAGGGTTGCGGTAGTAAGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGTAGGATCGACAGCACT
* * ** * ** *
13824884 CAGGGGGGACCAGGCCAAT-CCGTGACTTGCACATTCTGCCTCTCCAGCCGGTTGAGTGC-CCGT
65 CAGGGGGGACGA-GCCGATCCCCAG-CTTGCGCATTCTGCCTCTCTGGCCGGCTGA--GCACCGT
* * * *
13824947 AAGCCCGTTTCATGGGTTGGCTTAGGCATAG
126 ACGCTCGTTTCATTGGTTGGCTTAGGCATAC
** * * * **
13824978 GGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCAAGGGTTGTGGCAGTGGGATCGGTAGCA-T
1 GGAGTTCATTCCATGTCTAAGATC-AGACCGGACCAAGGGTTGCGGTAGTAGGATCGACAGCACT
* * * * * * *
13825041 GCAGAGAGGGACCGAGCTGATCCCCGGTTTACGCATTAC-GCCTCT-TCGACCGGCTCAGCATCC
65 -CAG-GGGGGA-CGAGCCGATCCCCAGCTTGCGCATT-CTGCCTCTCT-GGCCGGCTGAGCA-CC
* ** * *
13825104 GTGCGCTCGTTTTGTTGGTCGACTTAGGCATAC
124 GTACGCTCGTTTCATTGGTTGGCTTAGGCATAC
* *
13825137 GGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGCTGCGGTAGTAGGATCGACAGCACT
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGTAGGATCGACAGCACT
* * * *
13825201 CAGGGGGGATCGACCCGATCCCCAGCTTGTGCATTCTACCTCTCTGGTCGGCTGAGCACCTGTAC
65 CAGGGGGGA-CGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACC-GTAC
13825266 GCTCGTTTCATTGGTTGGCTTAGGCATAC
128 GCTCGTTTCATTGGTTGGCTTAGGCATAC
*
13825295 GGGGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
13825316 CATACAGAGT
Statistics
Matches: 260, Mismatches: 61, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
157 11 0.04
158 133 0.51
159 106 0.41
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGTAGGATCGACAGCACTC
AGGGGGGACGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCGTACGCT
CGTTTCATTGGTTGGCTTAGGCATAC
Found at i:13825405 original size:15 final size:12
Alignment explanation
Indices: 13825365--13825397 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
13825355 GAGGGTTGTG
13825365 GCAGCAGGACTA
1 GCAGCAGGACTA
13825377 GCAGCAGGACTA
1 GCAGCAGGACTA
13825389 GCAGCAGGA
1 GCAGCAGGA
13825398 TCGATAGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.36, T:0.06
Consensus pattern (12 bp):
GCAGCAGGACTA
Found at i:13825710 original size:26 final size:26
Alignment explanation
Indices: 13825681--13825733 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13825671 GTTGACTTAG
13825681 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTCT-CAGTCTAA
* *
13825707 GCATGCGGAGTTTATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13825733 G
1 G
13825734 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13826954 original size:159 final size:158
Alignment explanation
Indices: 13826699--13827142 Score: 475
Period size: 159 Copynumber: 2.8 Consensus size: 158
13826689 ACAACAGGGT
* * * * *
13826699 CGACAGCACGCAGGGGGGACCGAGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGACCGGTTTAG
1 CGACAGCACGTAGGGGGGACCGGGTCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCGGCTTAG
* * *
13826764 CGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
66 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAG
* * ** **
13826829 -TCAGACCAAGGGTTGTGGTAGTGGGAC
131 ACCAAACCAAGGGTTGCAGTAGCAGGAC
* * * * *
13826856 C-AGCAGCACGTAGAGGGGGACTGGGTCGATCCCCGATTTGCGCATTATGCCTCTTCGGCCGGCT
1 CGA-CAGCACGTAG-GGGGGACCGGGTCGATCCCCG-CTTGTGCATTCTGCCTCTCCGGCCGGCT
* * **
13826920 TAGAGCCCGCATGCTCGTTTCATGGGTTAACTTAGGCAT-GCGGAGTTCATTCCCAT-TCTAAG-
63 TAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATT-CCATGTCTAAGC
* * * *
13826982 ATCGGACCAAACCCAGGGTTGCAGTAGCAGGAT
126 ACCAGACCAAACCAAGGGTTGCAGTAGCAGGAC
* * * * *
13827015 CGACAGCACGTAGGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCAGCTG
1 CGACAGCACGTA-GGGGGGACCGGGTCGATCCC-CGCTTGTGCATTCTGCCTCTCCGGCCGGCTT
* * *
13827080 AGCGCCCGCACGCTCGTCTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
13827143 TACGGAGTTC
Statistics
Matches: 231, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 10 0.04
158 25 0.11
159 187 0.81
160 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGACAGCACGTAGGGGGGACCGGGTCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCGGCTTAG
CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAG
ACCAAACCAAGGGTTGCAGTAGCAGGAC
Found at i:13827150 original size:26 final size:26
Alignment explanation
Indices: 13827114--13827166 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13827104 GTTGGCTTAG
13827114 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13827140 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13827166 G
1 G
13827167 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13828179 original size:159 final size:158
Alignment explanation
Indices: 13827868--13828522 Score: 497
Period size: 159 Copynumber: 4.1 Consensus size: 158
13827858 TAAGCATACA
* * * * * * * *
13827868 GAGTTCATTCCTAGTCTAAGA-TCGAATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGT
1 GAGTTCATTCCCAGTCTAAGACTAG-ATCGAACCCAGGGTTGCGGCAGCAGGACCGACAGCACGC
* * * * * * * * *
13827932 AG-GAGG-GACCGGGTCAATCCCAAGCTTGTGCATTCTACCTCTCCGGCCGGCTAAGCGCCCACA
65 AGAG-GGAGACCGGGTCGATCCCGAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGAGCCCGCA
* *
13827995 CGCCCGTTTCATGGGTTGGCTTAGGCATAG
129 CGCTCGTTTCATGGGTTGACTTAGGCATAG
* * * * ** *
13828025 AGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCAC
1 -GAGTTCATTCCCA-GTCTAAG-ACTAGATCGAACCCAGGGTTGCGGCAGCAGGACCGACAGCAC
* * * * * *
13828088 GCAGAGGGAGATCGGGTTGATCCCCGA-TTTGCGCATTATGCCTCTTCGG-CTGGCTTAGAGCCT
63 GCAGAGGGAGACCGGGTCGAT-CCCGAGCTTGCGCATTATGCCTCTCCGGTC-GGCTCAGAGCCC
*
13828151 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
126 GCACGCTCGTTTCATGGGTTGACTTAGGCATA-G
* * * *
13828185 GAGTTCATTCCCAGTATAAGATTGGATCGAACCCAGGGTTGCGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGACTAGATCGAACCCAGGGTTGCGGCAGCAGGACCGACAGCACGCA
* * *
13828250 GAGGGGGACCGGGTCGATCCCTAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGCACG
66 GAGGGAGACCGGGTCGATCCCGAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGAGCCCGCACG
*
13828315 CTCATTTCATGGGTTGACTTAGGCAT-G
131 CTCGTTTCATGGGTTGACTTAGGCATAG
* * * * ** * * * *
13828342 CGAAGTTCATTCCCAGTCTAATA-TCGAACCGGACTGAGGGTTGCGACAGCAGGATCTACAGCAT
1 -G-AGTTCATTCCCAGTCTAAGACTAG-ATCGAACCCAGGGTTGCGGCAGCAGGACCGACAGCAC
* * * * * * ** * * * *
13828406 GTAGGGGGTGTCCAGGTTGATCCCTTGCTTGCGCATTCTGCCTCTCC-GACCG-ACAGAGCGCAC
63 GCAGAGGGAGACCGGGTCGATCCCGAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGAGC-C-C
* * *
13828469 GCACGCTCATTTCATGGGTTGGCTTAGGCATACA
126 GCACGCTCGTTTCATGGGTTGACTTAGGCATA-G
13828503 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
13828523 CATACAGGGT
Statistics
Matches: 403, Mismatches: 74, Indels: 39
0.78 0.14 0.08
Matches are distributed among these distances:
157 8 0.02
158 67 0.17
159 316 0.78
160 12 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGACTAGATCGAACCCAGGGTTGCGGCAGCAGGACCGACAGCACGCA
GAGGGAGACCGGGTCGATCCCGAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGAGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATAG
Found at i:13828450 original size:318 final size:317
Alignment explanation
Indices: 13827861--13828513 Score: 715
Period size: 318 Copynumber: 2.1 Consensus size: 317
13827851 CCCAGTCTAA
* * * * *
13827861 GCATACAGAGTTCATTCCTAGTCTAAGATCGAATCGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTATAAGATCGAATCGAACCCAGGGTTGCGACAGCAGGATCGACA
* * *
13827926 GCACGTAGGAGGGACCGGGTCAATCCCAAGCTTGTGCATTCTACCTCTCCGGCCGGCTAAGCGCC
66 GCACGCAGGAGGGACCGGGTCAATCCCAAGCTTGCGCATTATACCTCTCCGGCCGGCTAAGCGCC
* * * * **
13827991 CACACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCTAGTCGG
131 CACACGCCCATTTCATGGGTTGACTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCGAACCGG
* * ** * * *
13828056 ACCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGAGATCGGGTTGATCCCCGATTTGCG
196 ACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGAGGGAGATCAGGTTGATCCCCGACTTGCG
* * * * * * *
13828121 CATTATGCCTCTTCGGCTGGCTTAGAGC-C-TGCACGCTCGTTTCGTGGGTTGACTTAG
261 CATTATGCCTCTCCGACCGAC--AGAGCGCACGCACGCTCATTTCATGGGTTGACTTAG
* * * *
13828178 GCATACGGAGTTCATTCCCAGTATAAGATTGGATCGAACCCAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTATAAGATCGAATCGAACCCAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
13828243 GCACGCAGAGGGGGACCGGGTCGATCCCTAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTGC
66 GCACGCAG-GAGGGACCGGGTCAATCCCAAGCTTGCGCATTATACCTCTCCGGCCGGCTAAGCGC
* * * * *
13828308 CCGCACGCTCATTTCATGGGTTGACTTAGGCAT-GCGAAGTTCATTCCCA-GTCTAATATCGAAC
130 CCACACGCCCATTTCATGGGTTGACTTAGGCATAGAG-AGTTCATT-CCATGTCTAAGACCGAAC
* * * * * * * *
13828371 CGGACTGAGGGTTGCGACAGCAGGATCTACAGCATGTAGGGGGTG-TCCAGGTTGATCCCTTG-C
193 CGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGAGGGAGAT-CAGGTTGATCCC-CGAC
* *
13828434 TTGCGCATTCTGCCTCTCCGACCGACAGAGCGCACGCACGCTCATTTCATGGGTTGGCTTAG
256 TTGCGCATTATGCCTCTCCGACCGACAGAGCGCACGCACGCTCATTTCATGGGTTGACTTAG
13828496 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
13828514 ATGTCTAAGC
Statistics
Matches: 274, Mismatches: 55, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
316 5 0.02
317 67 0.24
318 198 0.72
319 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCCAGTATAAGATCGAATCGAACCCAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGAGGGACCGGGTCAATCCCAAGCTTGCGCATTATACCTCTCCGGCCGGCTAAGCGCC
CACACGCCCATTTCATGGGTTGACTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCGAACCGG
ACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGAGGGAGATCAGGTTGATCCCCGACTTGCG
CATTATGCCTCTCCGACCGACAGAGCGCACGCACGCTCATTTCATGGGTTGACTTAG
Found at i:13828526 original size:26 final size:26
Alignment explanation
Indices: 13828496--13828548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13828486 GTTGGCTTAG
13828496 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13828522 GCATACAGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13828548 G
1 G
13828549 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13829398 original size:26 final size:26
Alignment explanation
Indices: 13829364--13829414 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13829354 TGGCTTAGGA
*
13829364 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
13829390 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13829415 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:13830119 original size:26 final size:26
Alignment explanation
Indices: 13830083--13830135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13830073 GTTTACTTAG
*
13830083 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13830109 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13830135 G
1 G
13830136 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13830613 original size:26 final size:26
Alignment explanation
Indices: 13830583--13830633 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13830573 TGGCTTAGGT
13830583 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
13830609 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
13830634 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:13831671 original size:159 final size:157
Alignment explanation
Indices: 13831314--13831806 Score: 410
Period size: 159 Copynumber: 3.1 Consensus size: 157
13831304 CCTAGTCTAA
* * * *
13831314 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * *
13831379 GCACGC--AGGGGGATCGGCCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCAC
65 GCACGCAGAGGGGGATCGG-GCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCAC
* * *
13831442 CTGCACGCCCATTTTGTGGGTTGGCTTAG
129 CTACACGACCATTTTGTGGGTTGACTTAG
* ** * * * * * *
13831471 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTGGCAGCGGGATTGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
** * *
13831535 AGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTCC-AGTCGGCTCAGC
64 AGCACGCAGAGGGGGATCGGG-CGATCCCCAGCTTGCGCATTATGCCTCTCCGA-CCGGCTCAGC
*
13831599 GCCCATACAC-ACC-TTTTGTGGGTTGACTTAG
127 -ACC-TACACGACCATTTTGTGGGTTGACTTAG
* * **
13831630 GCATACGGAGTTCATTCCTAGACTAAGATCAGACCGGACCGAAGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* ** * * * * **
13831695 GCACGCAG-GGGGGACCGGGCTGATCCCCTA-CTCACGCATTCTGCCTCTCCGATCAGCTGAGTG
65 GCACGCAGAGGGGGATCGGGC-GATCCCC-AGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
** * *
13831758 CCCGCAC-ACTCATTTGGTGGGTTGGCTTAG
128 CCTACACGAC-CATTTTGTGGGTTGACTTAG
**
13831788 GCATACAAAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
13831807 TGTTAAACAT
Statistics
Matches: 266, Mismatches: 55, Indels: 30
0.76 0.16 0.09
Matches are distributed among these distances:
156 8 0.03
157 57 0.21
158 77 0.29
159 115 0.43
160 5 0.02
161 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAG
CACGCAGAGGGGGATCGGGCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCT
ACACGACCATTTTGTGGGTTGACTTAG
Found at i:13832171 original size:25 final size:26
Alignment explanation
Indices: 13832142--13832192 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
13832132 GTGGACTTAG
13832142 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13832167 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13832193 AATTAGACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13832672 original size:26 final size:26
Alignment explanation
Indices: 13832642--13832694 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13832632 GTTGGCTTAG
13832642 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13832668 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13832694 G
1 G
13832695 ATCAAACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13833418 original size:159 final size:156
Alignment explanation
Indices: 13833033--13833534 Score: 413
Period size: 158 Copynumber: 3.2 Consensus size: 156
13833023 CCCAGTCTAA
* * * * * *
13833033 GCATACAGAGTTCATTCTCGGTCTAAGATTAGATCGGATC-AAGGGTTGCGGTAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTGCGGTAGTAGGATCGAC
* * * * *
13833097 AGCACACA-AAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAAC-GGGTTAAGC
65 AGCACACAGAGGGGGACCGGGCCGAT-CCCTGCTTGCGCATTCTACCTCTCC-GCTGGCTCAA-C
* * * * *
13833160 ACCCTCACGCCCGTTTCGTGGGTTCGGTTAG
127 GCCCACACGCTCATTTCGTGGGTT-GCTTAG
** ** * * * ** *
13833191 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAAGGTTGCGGTAGTAGGATCGA
* * * * * *
13833254 TAGCACGCAGAGGGGGAGCGGGCCGATCGCCTGTTTGCGCATTATGCCTCTCCGGCTGGCTCAAC
64 CAGCACACAGAGGGGGACCGGGCCGATC-CCTGCTTGCGCATTCTACCTCTCC-GCTGGCTCAAC
* *
13833319 GCCCGCACGCTCATTTCGTGGGTTGACTTAT
127 GCCCACACGCTCATTTCGTGGGTTG-CTTAG
* *
13833350 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGATAGTAAGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAGTAGGATCGACA
* * * * * * * * *
13833415 GCACATAG-GGGGGACCGAGCCGATCCCTGGCTTACACATTCTACCTTTTCGATCGACTGAACGC
66 GCACACAGAGGGGGACCGGGCCGATCCCT-GCTTGCGCATTCTACCTCTCCGCT-GGCTCAACGC
13833479 CCACACGCTCATTTCGTGGGTTGGCTTAG
129 CCACACGCTCATTTCGTGGGTT-GCTTAG
* **
13833508 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
13833535 CATATGGAGT
Statistics
Matches: 266, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
157 6 0.02
158 138 0.52
159 114 0.43
160 8 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAGTAGGATCGACA
GCACACAGAGGGGGACCGGGCCGATCCCTGCTTGCGCATTCTACCTCTCCGCTGGCTCAACGCCC
ACACGCTCATTTCGTGGGTTGCTTAG
Found at i:13833544 original size:26 final size:26
Alignment explanation
Indices: 13833508--13833560 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13833498 GTTGGCTTAG
**
13833508 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13833534 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13833560 G
1 G
13833561 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13834738 original size:26 final size:26
Alignment explanation
Indices: 13834702--13834754 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13834692 TTTGGCTTAG
13834702 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13834728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13834754 G
1 G
13834755 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.