Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 76 of 138
Found at i:13835278 original size:26 final size:26
Alignment explanation
Indices: 13835241--13835293 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13835231 GTTGGCTTAG
*
13835241 GCATACGAAGTTTATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
13835267 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
13835293 G
1 G
13835294 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:13836338 original size:159 final size:157
Alignment explanation
Indices: 13836072--13836480 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 157
13836062 CCAATCCTCG
* * * *
13836072 GCTTGCGCATTCTGCCTTTTCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGGTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGCTAA-CGCCCACACGCTC-TTTCGTGGGTTGGCTTAGG
* *
13836137 CATA-AGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATTGAC
64 CATACA-GAGTTCATTCCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGCAGCAGGATTGAC
*
13836200 AGCACGCAGAGGGG-GATCGAGTCCATCCCTA
128 AGCACGCAG-GGGGCGACCGAGTCCAT-CCTA
* * * *
13836231 GCTTGCGCATTATGCCTCACCGGTTGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGCT-AACGCCCACACGCTC-TTTCGTGGGTTGGCTTAGG
**** * * *
13836296 CATACAGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGATCGAGGGTTGCGGTAGCAGGATTGAC
64 CATACAGAGTTCATTCCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGCGGCAGCAGGATTGAC
* * ** *
13836359 AGCATGCAGGGGGCGACCGGGTCGGTCCTC
128 AGCACGCAGGGGGCGACCGAGTCCATCCTA
* * * * * * * *
13836389 GACTTGCACATTCTACCTCTCCGGCCAGCTGAGCACCCACACGCTCGTTCATGGGTTGGCTTAGG
1 G-CTTGCGCATTCTGCCTCTCCGGTCGGCT-AACGCCCACACGCTCTTTCGTGGGTTGGCTTAGG
*
13836454 CATACAGAGTTCATT-CCATGTTTAAGC
64 CATACAGAGTTCATTCCCATGTCTAAGC
13836481 ATACGGAGTT
Statistics
Matches: 204, Mismatches: 38, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 46 0.23
159 149 0.73
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GCTTGCGCATTCTGCCTCTCCGGTCGGCTAACGCCCACACGCTCTTTCGTGGGTTGGCTTAGGCA
TACAGAGTTCATTCCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGGCAGCAGGATTGACAGC
ACGCAGGGGGCGACCGAGTCCATCCTA
Found at i:13836505 original size:26 final size:26
Alignment explanation
Indices: 13836453--13836505 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13836443 GTTGGCTTAG
*
13836453 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
13836479 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
13836505 G
1 G
13836506 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:13837517 original size:26 final size:26
Alignment explanation
Indices: 13837487--13837539 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13837477 GTTGGCTTAG
13837487 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13837513 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13837539 G
1 G
13837540 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13837697 original size:195 final size:195
Alignment explanation
Indices: 13837198--13837709 Score: 584
Period size: 196 Copynumber: 2.6 Consensus size: 195
13837188 TAGGATCGAC
* * * * * * * * *
13837198 AGCATGCAGGGGGGACTGGGTCGATGCTTGGCTTGTGCTTTCTACCTCTCCAATTGGCTGAGCGC
1 AGCACGCAGGGAGGACCGGGCCGATCCCTGGCTTGAGCATTCTACCTCTCCGA-TGGCTGAGCGC
* * *
13837263 C-GCACGCTCATTTCATGGGTTGGCTTAGGCAGACGGGGTTTATTCCATGTCTAAGCATATGGAG
65 CTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAG
* * ** * *
13837327 TTCATTCCCAGTCTAATATCGGACTGGACCAAGGGTTGTGACAGCAGAACTAGCAGCAGGATCGG
130 TTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACGACAGCAGAACCAGCAGCAAGATCGG
13837392 T
195 T
* * * * *
13837393 AGGACGCAGGGGGGACCGGGCCGATCCCTGG-TTTACGCATTCTACCTCTTCGATCGGCTGAGTG
1 AGCACGCAGGGAGGACCGGGCCGATCCCTGGCTTGA-GCATTCTACCTCTCCGAT-GGCTGAGCG
* *
13837457 CTTGCACGCACATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGA
64 CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGA
* * * ** * *
13837522 GTTCATTCCCAGTCTAAGATCGAA-TCGGATCGAGTGTTACGGTAGCA-AGGCCAGCAGTAAGAT
129 GTTCATTCCCAGTCTAAGATCGAACT-GGACCAAGGGTTACGACAGCAGA-ACCAGCAGCAAGAT
13837585 CGGT
192 CGGT
* * * *
13837589 AGCATGCAGGGAGGATCGGGCTGAT-CCTGGCTTGAGCATTCTGCCTCTCCGACTGGCTGAGCGC
1 AGCACGCAGGGAGGACCGGGCCGATCCCTGGCTTGAGCATTCTACCTCTCCGA-TGGCTGAGCGC
* * *
13837653 CTACACGTTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13837710 CCCAACCGGA
Statistics
Matches: 266, Mismatches: 44, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
194 3 0.01
195 131 0.49
196 132 0.50
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (195 bp):
AGCACGCAGGGAGGACCGGGCCGATCCCTGGCTTGAGCATTCTACCTCTCCGATGGCTGAGCGCC
TGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGT
TCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACGACAGCAGAACCAGCAGCAAGATCGGT
Found at i:13838180 original size:156 final size:158
Alignment explanation
Indices: 13837804--13838194 Score: 484
Period size: 158 Copynumber: 2.5 Consensus size: 158
13837794 CTCCGGTCGA
* ** * * * * * *
13837804 CCTCTCCGGTAGACTGAGCGCTCGGACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
1 CCTCTCCGGTCGGTTGAGCGCCCGCACGCTGATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
** * * * *
13837869 TCTTAGTCTAAGATTAGACCGAACTGAGGGTTGCGACAGTAGGATCGACTGCACGTAGGGGGGAT
66 TCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGAT
** *
13837934 CGGGTCGGTCCCCGGCTTGCACATTCTG
131 CGGGTCGGTCCCCCACTTGCACATTCGG
* * * * *
13837962 CCTCTCTGGTCGGTTGAGCACCCACACACTCG-TTTCATGGGTTGGCTTAGGCATACGAAGTTCA
1 CCTCTCCGGTCGGTTGAGCGCCCGCACGCT-GATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * * *
13838026 TTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTG-GAGCAGGATCGACAGCACGCAGGGGGGA
65 TTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGA
*
13838090 TCGGGTCGGTCCCCCACTTGCGCATT-GG
130 TCGGGTCGGTCCCCCACTTGCACATTCGG
13838118 CCTCTCCGGTCGGTTGAGCGCCCGCACGCTGATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGTCGGTTGAGCGCCCGCACGCTGATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
13838183 T-CCATGTCTAAG
66 TCCCA-GTCTAAG
13838195 CATACAGAGT
Statistics
Matches: 197, Mismatches: 33, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
155 4 0.02
156 67 0.34
157 47 0.24
158 79 0.40
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
CCTCTCCGGTCGGTTGAGCGCCCGCACGCTGATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGAT
CGGGTCGGTCCCCCACTTGCACATTCGG
Found at i:13838198 original size:26 final size:26
Alignment explanation
Indices: 13838168--13838220 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13838158 GTTGGCTTAG
*
13838168 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13838194 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13838220 G
1 G
13838221 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13838578 original size:26 final size:26
Alignment explanation
Indices: 13838549--13838601 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13838539 GTTGACTTAG
*
13838549 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13838575 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13838601 G
1 G
13838602 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13838726 original size:356 final size:357
Alignment explanation
Indices: 13838268--13839154 Score: 991
Period size: 356 Copynumber: 2.5 Consensus size: 357
13838258 AGCAGGATCA
* * * ** *
13838268 ACAGCATGCAAGAGGGGATCGGGCTGATCCCCTGCTTGCGCATTCTGCCTCTCTAG-CTGGTTGA
1 ACAGCATGCAGGA-GGGACCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCT-TGGTC-GGTTGA
* * * * *
13838332 GCACCCGCACGTTCTTTTCATGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
63 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* * *
13838397 GTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGTGACTGGG
128 GCCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGG
* *** * ** * * **
13838462 CTGATCCTCGACTTTTGCATTATGTCTC-TCCGATCGACCTCTCC-GGTCGGCTGAGTGCCCGTA
193 CTGATCCCCGACTTGCACATTATGCCTCGT-CGATCGACCTCTCCAACT-AGATGAGTGCCCACA
*
13838525 CGCTCATTTTATCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGA-AGTTCA
256 CGCTCATTTTATCGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA-GAGAGTTCA
*
13838589 TTCCTAGTCTAAGATCGGAT-CGGACCGAGGGTT-AC-G
320 TTCCTAGTCTAAGATCGG-TCCAGACCGAGGGTTGACAG
* *
13838625 ACAGCATGCAGGAGGGACCGGGCCCATCCCAGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGT
1 ACAGCATGCAGGAGGGACCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTT-GGTCGGTTGAGC
* * * *
13838690 GCCCGCACGCTCGTTTCGTGGGTAGGCTTAGGCATACAGAGTTAATTCCATATCTAAGCCCCAGC
65 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* ** * **
13838755 CGGACTGAGGGTTGTGGCAACAGGATTGACAGCGGGATCGGTAGCACGCAGAGGGGGACTGGGCT
130 CGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGCT
* * *
13838820 GATCCCCGGCTTGCACATTATGCCTCGTCGATCGACCTCTCCAACTAGATGAGTGTCTACACGCT
195 GATCCCCGACTTGCACATTATGCCTCGTCGATCGACCTCTCCAACTAGATGAGTGCCCACACGCT
* * * * *
13838885 CGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCGT
260 CATTTTATCGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAGAGAGTTCATTCCT
13838950 AGTCTAAGATCGGTCCAGACCGAGGGTTGCGACAGTAGG
325 AGTCTAAGATCGGTCCAGACCGAGGGTT--GAC---A-G
* * * * * * **
13838989 ATCGGTAGCACGCAGG-GGGGCCGAGCCGATCCCTGGCTTGGGCATTCTGCCTCTTTGTCCGACT
1 A-C---AGCATGCAGGAGGGACCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTTGGT-CGGTT
* * *
13839053 GAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
61 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
**
13839118 CAGCCAGG-CTGAGGGTTGTGGCAGTGGGACCGGCAGC
126 CAGCC-GGACTGAGGGTTGTGGCAGCAGGACCGGCAGC
13839155 ACGTAAAGGG
Statistics
Matches: 440, Mismatches: 70, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
355 3 0.01
356 282 0.64
357 15 0.03
359 2 0.00
364 2 0.00
365 1 0.00
366 2 0.00
367 122 0.28
368 11 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (357 bp):
ACAGCATGCAGGAGGGACCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTTGGTCGGTTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
GGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGCTG
ATCCCCGACTTGCACATTATGCCTCGTCGATCGACCTCTCCAACTAGATGAGTGCCCACACGCTC
ATTTTATCGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAGAGAGTTCATTCCTA
GTCTAAGATCGGTCCAGACCGAGGGTTGACAG
Found at i:13839441 original size:26 final size:26
Alignment explanation
Indices: 13839405--13839457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13839395 GTTGGCTTAG
13839405 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13839431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13839457 G
1 G
13839458 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13840164 original size:26 final size:26
Alignment explanation
Indices: 13840128--13840180 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13840118 GTTGACTTAG
*
13840128 GCATACAAAGTTTATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
13840154 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
13840180 G
1 G
13840181 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:13840352 original size:26 final size:26
Alignment explanation
Indices: 13840300--13840352 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13840290 GTTGGCTTAG
* *
13840300 GCATACGGAGTTCATTCCATATTTAA
1 GCATACAGAGTTCATTCCATATCTAA
13840326 GCATACAGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCATA-TCTAA
13840352 G
1 G
13840353 ATTGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13840388 original size:21 final size:21
Alignment explanation
Indices: 13840362--13840407 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
13840352 GATTGAATCA
*
13840362 GACCGAAGGTTGCAGTAGCCG
1 GACCGAAGGTTGCAGTAGCAG
13840383 GACCGAAGGTTGCAGTAGCAG
1 GACCGAAGGTTGCAGTAGCAG
13840404 GACC
1 GACC
13840408 AGCAGCAGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.24, G:0.37, T:0.13
Consensus pattern (21 bp):
GACCGAAGGTTGCAGTAGCAG
Found at i:13840687 original size:170 final size:168
Alignment explanation
Indices: 13840378--13840886 Score: 526
Period size: 171 Copynumber: 3.0 Consensus size: 168
13840368 AGGTTGCAGT
* *
13840378 AGCCGGACCGAAGGTTGCAGTAGCAGGACCAGCAGC-AGGATCGACAGCACGCAG-GGGGGACTG
1 AGCCGGAACGAAGGTTGTAGTAGCAGGACCAGCAGCGA-GATCGACAGCACGCAGAGGGGGAC-G
* * ** * * * * * * *
13840441 -GGTCGGTCCCCGACTTATGTATTCTGCCTCTCCGACTGGCTGAGCACCTGCACGCTCATTTTGA
64 AGCT-GATCCCCGACTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCCGTAAGCTCGTTTTG-
*
13840505 AGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCC
127 TGGTT-GCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCC
* * *
13840548 AGTC-GAACAGAAGGTTGTTGTAGCAGGACCAGCAGCGAGATCGACAGCACACAGAGGGGGATCG
1 AGCCGGAAC-GAAGGTTGTAGTAGCAGGACCAGCAGCGAGATCGACAGCACGCAGAGGGGGA-CG
* * *
13840612 AGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTAAGCCCGTTTTGTT
64 AGCTGATCCCCGACTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCCGTAAGCTCGTTTTG-T
*
13840677 GGTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
128 GGTTGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCC
* * * * * * * *
13840718 AGCCGGATCGAGGGTTGTGGTTGCAAGGATCAGCAGTGCGATCGACAGCACGCAGAGGGGGACCA
1 AGCCGGAACGAAGGTTGTAGTAGC-AGGACCAGCAGCGAGATCGACAGCACGCAGAGGGGGA-CG
* * * * * *
13840783 AGCTGATCCCCAACTTGCGTATTATGCCTCTCCAACCGGCTGAGTGCCCGCTCA-CTGGTTTCGT
64 AGCTGATCCCCGACTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCCG-TAAGCTCGTTTTGT
*
13840847 GGATTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGC
128 GG-TTG-CTTAGGCATATGGAGTTCAT-TCCATGTCTAAGC
13840887 ATATGGAGTT
Statistics
Matches: 284, Mismatches: 44, Indels: 20
0.82 0.13 0.06
Matches are distributed among these distances:
169 3 0.01
170 97 0.34
171 149 0.52
172 32 0.11
173 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (168 bp):
AGCCGGAACGAAGGTTGTAGTAGCAGGACCAGCAGCGAGATCGACAGCACGCAGAGGGGGACGAG
CTGATCCCCGACTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCCGTAAGCTCGTTTTGTGGT
TGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCC
Found at i:13840895 original size:26 final size:26
Alignment explanation
Indices: 13840859--13840911 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13840849 ATTGACTTAG
13840859 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
13840885 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
13840911 G
1 G
13840912 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:13841212 original size:159 final size:160
Alignment explanation
Indices: 13840991--13841389 Score: 438
Period size: 159 Copynumber: 2.5 Consensus size: 160
13840981 TTGCGTATTC
* * * *
13840991 TGCCTCTCCGATCGGCTGAGCACCCGCACG-TCCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
1 TGCCTCTTCGATTGGCTAAGCACCCGCACGCT-CATTTCATGGGTTGGCTTAGGCATACGGAGTT
* *
13841055 CATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGG
65 CATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG-GG
13841119 G-GGATC-AGACCGAT-CCTCGACTT-ATGCATTA
129 GTGGATCGAG-CCGATCCCT-GACTTGAT-CATTA
* * * * * *
13841150 TGCCTCTTCGATTGGCTCAGCGCCCGCACGCTCGTTTCATGAGTTGACTTATGCATACGGAGTTC
1 TGCCTCTTCGATTGGCTAAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * * *
13841215 ATTCC-TAGTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGGG
66 ATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGG
* * *
13841278 TGGATCGAGCCGATCCCTGGCTTGCTCATTC
130 TGGATCGAGCCGATCCCTGACTTGATCATTA
* ** * * *
13841309 TGCCTCTCTGGCCT-GCTAAGCACTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTT
1 TGCCTCT-TCGATTGGCTAAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
13841373 CATTCCATGTCTAAGCA
65 CATTCCATGTCTAAGCA
13841390 TACGGAGTTC
Statistics
Matches: 199, Mismatches: 31, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
158 7 0.04
159 180 0.90
160 12 0.06
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (160 bp):
TGCCTCTTCGATTGGCTAAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGT
GGATCGAGCCGATCCCTGACTTGATCATTA
Found at i:13841411 original size:26 final size:26
Alignment explanation
Indices: 13841361--13841413 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13841351 GTTGGCTTAG
*
13841361 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
13841387 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
13841413 G
1 G
13841414 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:13842120 original size:26 final size:26
Alignment explanation
Indices: 13842084--13842136 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13842074 GTTGACTTAG
* *
13842084 GCATATGGAGTTCCTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13842110 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13842136 G
1 G
13842137 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13842304 original size:26 final size:26
Alignment explanation
Indices: 13842268--13842320 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13842258 GTTGGCTTAG
13842268 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13842294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13842320 G
1 G
13842321 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13842490 original size:26 final size:26
Alignment explanation
Indices: 13842461--13842512 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13842451 TGGGTTGACT
13842461 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
13842487 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
13842513 AAAATCGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:13842725 original size:232 final size:229
Alignment explanation
Indices: 13842451--13843180 Score: 599
Period size: 232 Copynumber: 3.3 Consensus size: 229
13842441 GCTCGTTCCG
*
13842451 TGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAA
1 TGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
13842516 ATCGTTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACCGGATTGAAG
66 ATCGTTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACCGGA-TGAAG
13842581 GTGGCGGCAGTAGGATCGACAGCACGCAGGAGTGGACCGGGCTAATCCATGGCTTGCGCATTCTG
130 GTGGCGGCAGTAGGATCGACAGCACGCAGGAGTGGACCGGGCTAATCCATGGCTTGCGCATTCTG
13842646 CCTCTTCGATCGACTGAGCACCTATCCGCTCATTTCA
195 CCTCTTCGATCG-CTGAGCACCT-TCCGCTCATTTCA
* * *
13842683 TGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAAGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTC-A
* ** * * * * * * **
13842747 AGATCGGATCA--GATCGAGGC-T-TGCAGTAGCAGGA--CCA---GCAGT-AGGATC-GA-CGG
64 AAATCGTTTTATGGGTTGA--CTTATGCA-TA-C-GGAGTTCATTCCCAATCAAAATCAGACCGG
* * * * * * *
13842800 CA-CATAGG-GG-GG-A-T-CGAGTCGATC--C-C-C--GACT----TGTG-T-ATTC-TGCCTC
124 -ATGA-AGGTGGCGGCAGTAGGA-TCGA-CAGCACGCAGGAGTGGACCGGGCTAATCCATGGCT-
* * * * * *
13842846 T-CTGACCTTCTGAC-CTTCTGA-C-C---GC-CC-GCACGCTCGTTCCG
184 TGC-G-CATTCTGCCTCTTC-GATCGCTGAGCACCTTC-CGCTCATTTCA
*
13842887 TCGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
1 TGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
* * *
13842952 ATCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACCGTACTGAAG
66 ATCGTTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACCGGA-TGAAG
* * *
13843017 GTGGCGGCAGTAGGATCGACAGCACGCAGAAGTGGACCAGGCTAATCCATGGCTTGCGTATTCTG
130 GTGGCGGCAGTAGGATCGACAGCACGCAGGAGTGGACCGGGCTAATCCATGGCTTGCGCATTCTG
13843082 CCTCTTCGATCGGCTGAGCACCTGTCCGCTCATTTCA
195 CCTCTTCGATC-GCTGAGCACCT-TCCGCTCATTTCA
* * * * *
13843119 TGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
1 TGGGTTGACTTAAGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTC
13843181 TAAGATTTTG
Statistics
Matches: 369, Mismatches: 68, Indels: 122
0.66 0.12 0.22
Matches are distributed among these distances:
202 3 0.01
203 9 0.02
204 67 0.18
205 13 0.04
206 2 0.01
207 3 0.01
208 4 0.01
209 4 0.01
210 10 0.03
211 13 0.04
212 12 0.03
213 4 0.01
214 5 0.01
215 3 0.01
216 1 0.00
217 4 0.01
219 3 0.01
220 1 0.00
221 3 0.01
222 5 0.01
223 3 0.01
224 11 0.03
225 13 0.04
226 11 0.03
227 4 0.01
228 4 0.01
229 3 0.01
230 2 0.01
231 16 0.04
232 119 0.32
233 11 0.03
234 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (229 bp):
TGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
ATCGTTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACCGGATGAAGG
TGGCGGCAGTAGGATCGACAGCACGCAGGAGTGGACCGGGCTAATCCATGGCTTGCGCATTCTGC
CTCTTCGATCGCTGAGCACCTTCCGCTCATTTCA
Found at i:13842726 original size:26 final size:26
Alignment explanation
Indices: 13842696--13842748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13842686 GTTGGCTTAG
*
13842696 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13842722 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13842748 G
1 G
13842749 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13842926 original size:26 final size:26
Alignment explanation
Indices: 13842897--13842948 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13842887 TCGGTTGACT
*
13842897 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
13842923 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
13842949 AAAATCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:13843062 original size:436 final size:428
Alignment explanation
Indices: 13842255--13843186 Score: 1648
Period size: 436 Copynumber: 2.2 Consensus size: 428
13842245 GATCGTTTAG
13842255 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
13842320 GATCGGATCAGATCGAGGCTTGCAGTAGCAGGACCAGCAGCAGGATCGACGGCACATAGGGGGGA
66 GATCGGATCAGATCGAGGCTTGCAGTAGCAGGACCAGCAGCAGGATCGACGGCACATAGGGGGGA
* *
13842385 TCGAGTCGATCCCTGACTTGTGTATTCTGCCTCTCTGACCTTCTGACCACCCGTACGCTCGTTCC
131 TCGAGTCGATCCCCGACTTGTGTATTCTGCCTCTCTGACCTTCTGACCACCCGCACGCTCGTTCC
* *
13842450 GTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAA
196 GTCGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAA
* *
13842515 AATCGTTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACCGGATTGAA
261 AATCATTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACCGGACTGAA
* *
13842580 GGTGGCGGCAGTAGGATCGACAGCACGCAGGAGTGGACCGGGCTAATCCATGGCTTGCGCATTCT
326 GGTGGCGGCAGTAGGATCGACAGCACGCAGAAGTGGACCAGGCTAATCCATGGCTTGCGCATTCT
13842645 GCCTCTTCGATCGACTGAGCACCTATCCGCTCATTTCA
391 GCCTCTTCGATCGACTGAGCACCTATCCGCTCATTTCA
*
13842683 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
*
13842748 GATCGGATCAGATCGAGGCTTGCAGTAGCAGGACCAGCAGTAGGATCGACGGCACATAGGGGGGA
66 GATCGGATCAGATCGAGGCTTGCAGTAGCAGGACCAGCAGCAGGATCGACGGCACATAGGGGGGA
13842813 TCGAGTCGATCCCCGACTTGTGTATTCTGCCTCTCTGACCTTCTGACCTTCTGACCGCCCGCACG
131 TCGAGTCGATCCCCGACTTGTGTATTCTGCCTCTCTGACCTTCTGA-C--C--A---CCCGCACG
13842878 CTCGTTCCGTCGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTC
188 CTCGTTCCGTCGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTC
*
13842943 CCAGTCAAAATCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACC
253 CCAGTCAAAATCATTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACC
*
13843008 GTACTGAAGGTGGCGGCAGTAGGATCGACAGCACGCAGAAGTGGACCAGGCTAATCCATGGCTTG
318 GGACTGAAGGTGGCGGCAGTAGGATCGACAGCACGCAGAAGTGGACCAGGCTAATCCATGGCTTG
* * *
13843073 CGTATTCTGCCTCTTCGATCGGCTGAGCACCTGTCCGCTCATTTCA
383 CGCATTCTGCCTCTTCGATCGACTGAGCACCTATCCGCTCATTTCA
*
13843119 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
13843184 GAT
66 GAT
13843187 TTTGAGCCAC
Statistics
Matches: 479, Mismatches: 17, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
428 173 0.36
429 1 0.00
431 1 0.00
433 1 0.00
436 303 0.63
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (428 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGATCAGATCGAGGCTTGCAGTAGCAGGACCAGCAGCAGGATCGACGGCACATAGGGGGGA
TCGAGTCGATCCCCGACTTGTGTATTCTGCCTCTCTGACCTTCTGACCACCCGCACGCTCGTTCC
GTCGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAA
AATCATTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCAAAATCAGACCGGACTGAA
GGTGGCGGCAGTAGGATCGACAGCACGCAGAAGTGGACCAGGCTAATCCATGGCTTGCGCATTCT
GCCTCTTCGATCGACTGAGCACCTATCCGCTCATTTCA
Found at i:13843162 original size:26 final size:26
Alignment explanation
Indices: 13843132--13843184 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13843122 GTTGGCTTAG
13843132 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13843158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13843184 G
1 G
13843185 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13843742 original size:158 final size:158
Alignment explanation
Indices: 13843336--13843766 Score: 429
Period size: 159 Copynumber: 2.7 Consensus size: 158
13843326 GCAGCAGCAG
** *
13843336 GAGGGACTGGGTCGAT-CCCTGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGC
1 GAGGGACCAGGTCGATCCCCTG-CTTGCGCATTCTGCCTCT-CGGCCGGCTGAGCACCCGCACGC
* * * *
13843400 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
64 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGG
*** ** * * *
13843465 GTTATGGCAGTGGGATTGACAGCACGTAGA
129 GTTACAACAGCAGAATCGACAGAACGTAGA
* * * * * * ** * * *
13843495 GAGGGATCGGGTCGATCCCCAGATTACGCATTATGCCTCTTCAACCGGCTCAGCACCTGAACGCT
1 GAGGGACCAGGTCGATCCCCTGCTTGCGCATTCTGCCTC-TCGGCCGGCTGAGCACCCGCACGCT
* * * * ***
13843560 CGTTTCATAGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTTGG
65 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCAAG
*
13843623 GGTTGCAACAGCAGAATCGACAGAACGTAG-
128 GGTTACAACAGCAGAATCGACAGAACGTAGA
* * * *
13843653 GGGGGACCAGGTTGATCCCCTGCTTGTGCATTCTGCCTCTCGTGCCGGCTGAGCGCCCGCACGCT
1 GAGGGACCAGGTCGATCCCCTGCTTGCGCATTCTGCCTCTCG-GCCGGCTGAGCACCCGCACGCT
*
13843718 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
65 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13843767 TACGGAGTTC
Statistics
Matches: 214, Mismatches: 51, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 89 0.42
159 112 0.52
160 8 0.04
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GAGGGACCAGGTCGATCCCCTGCTTGCGCATTCTGCCTCTCGGCCGGCTGAGCACCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGGGT
TACAACAGCAGAATCGACAGAACGTAGA
Found at i:13843768 original size:26 final size:26
Alignment explanation
Indices: 13843738--13843790 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13843728 GTTGGCTTAG
13843738 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13843764 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13843790 G
1 G
13843791 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13844483 original size:25 final size:26
Alignment explanation
Indices: 13844447--13844498 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13844437 GTTGACTTAG
*
13844447 GCATACGGAGTT-ATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13844472 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13844498 G
1 G
13844499 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13844976 original size:26 final size:26
Alignment explanation
Indices: 13844947--13845005 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
13844937 GTTGGCTTAG
*
13844947 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13844973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13844999 -CAT-CAGA
1 GCATACAGA
13845006 CTGGATCGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 20 0.69
27 3 0.10
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13845644 original size:26 final size:26
Alignment explanation
Indices: 13845614--13845666 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13845604 GTTGGCTGAG
13845614 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13845640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13845666 G
1 G
13845667 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13845863 original size:26 final size:26
Alignment explanation
Indices: 13845811--13845863 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13845801 GGTGACTTAG
*
13845811 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
13845837 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13845863 G
1 G
13845864 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13846550 original size:26 final size:26
Alignment explanation
Indices: 13846514--13846566 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13846504 GTTGGCTTAG
13846514 GCATACAGAGTTCATTT-CATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
13846540 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
13846566 G
1 G
13846567 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:13847268 original size:26 final size:26
Alignment explanation
Indices: 13847238--13847296 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
13847228 GTTGACTTAG
13847238 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
13847264 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13847290 -CAT-CAGA
1 GCATACAGA
13847297 CTAGATCGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 22 0.73
27 1 0.03
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13848148 original size:26 final size:26
Alignment explanation
Indices: 13848118--13848170 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13848108 GTTGACTTAG
13848118 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
13848144 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13848170 G
1 G
13848171 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13848593 original size:159 final size:158
Alignment explanation
Indices: 13848144--13848646 Score: 457
Period size: 159 Copynumber: 3.2 Consensus size: 158
13848134 CCCAGTCTAA
* *
13848144 GCATACGGAGTTTATTCC-TAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
13848208 AACACGCAGTA-GGGATCGGGTCGAT-CCTCGACTTACGCATTCTACCTCTCCGACTGGCTGAGC
65 AGCACGCAGAAGGGGATCGGGCCGATCCCTC-ACTTGCGCATTCTACCTCTCCGAC-CGCTAAGC
* * *
13848271 ACCC-ACACCCCCATTTCGTGGGTTGGCTTAG
128 ACCCGA-ACGCTCATTTCGTGGGTTGACTTAG
* * ** * ** ** ** *
13848302 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGGGTTATGGCGGTTGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * *
13848366 AGCACGCAGAGGGGGATCTGGCTGATCCC-CAGCTTGTGCATTATGCATCTCCGGCCTGCTCAA-
65 AGCACGCAGAAGGGGATCGGGCCGATCCCTCA-CTTGCGCATTCTACCTCTCCGACC-GCT-AAG
* *
13848429 CACCCGAAAGCTCATTTCATGGGTTGACTTAG
127 CACCCGAACGCTCATTTCGTGGGTTGACTTAG
* *
13848461 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * *
13848525 AGCATGCAGAAGGGGATCGGGCCGGTCCCTTACTTGCGCATTCTACCTCTCTGACCGACTAAGTA
65 AGCACGCAGAAGGGGATCGGGCCGATCCCTCACTTGCGCATTCTACCTCTCCGACCG-CTAAGCA
* *
13848590 CCCGTACGCTCGTTTCGTGGGTT-AGCTTAG
129 CCCGAACGCTCATTTCGTGGGTTGA-CTTAG
*
13848620 GCATACGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13848647 CATACAGAGT
Statistics
Matches: 265, Mismatches: 65, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
157 2 0.01
158 61 0.23
159 193 0.73
160 9 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGAAGGGGATCGGGCCGATCCCTCACTTGCGCATTCTACCTCTCCGACCGCTAAGCACC
CGAACGCTCATTTCGTGGGTTGACTTAG
Found at i:13848649 original size:26 final size:26
Alignment explanation
Indices: 13848620--13848672 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13848610 GTTAGCTTAG
* *
13848620 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
13848646 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
13848672 G
1 G
13848673 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:13848906 original size:26 final size:26
Alignment explanation
Indices: 13848828--13848894 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
13848818 GTTGACTTAG
13848828 GCATACGGAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATTTAA
*
13848854 GTATACGGAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATTTAA
13848880 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
13848895 TCCTAGTCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATTTAA
Found at i:13849233 original size:26 final size:26
Alignment explanation
Indices: 13849197--13849249 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13849187 GTTGGCTTAG
13849197 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13849223 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13849249 G
1 G
13849250 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13849339 original size:11 final size:11
Alignment explanation
Indices: 13849319--13849350 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
13849309 TCGGGGCACG
13849319 ATCATCGGAGC
1 ATCATCGGAGC
*
13849330 ATCATTGGAGC
1 ATCATCGGAGC
13849341 ATCATCGGAG
1 ATCATCGGAG
13849351 AGCCAAACCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (11 bp):
ATCATCGGAGC
Found at i:13849952 original size:26 final size:26
Alignment explanation
Indices: 13849914--13849966 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13849904 GTTGGCTTAG
13849914 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
13849940 GCATATGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13849966 G
1 G
13849967 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13850497 original size:716 final size:709
Alignment explanation
Indices: 13849123--13850562 Score: 1909
Period size: 716 Copynumber: 2.0 Consensus size: 709
13849113 GGGGACCGGG
** * * * **
13849123 TTGATCCCTGGCTTGCGCATTTTGCCTCTCCGACCGACTAAGTCCCCGCACGCTCGTTTCGTTTG
1 TTGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTAAGTCCCCGCACGCTCATTTCGTGGG
13849188 TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGT
66 TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGT
* * ** *
13849253 TTGAGCCACGGTGCACACCTGGGCTTGGGCATATGTTGGTGCTGCATTTTTTTCACTCGGGGCAC
131 TTGAGCCACGGTGCACACCTGGGCTCGGGCATATGCTGGTGCCACATTTTTTTCACCCGGGGCAC
* * *
13849318 GATCATCGGAGCATCATTGGAGCATCATCGGAGAGCCAAACCGGCGGTATTAGGGGTTCCGATGA
196 -A-CATC-G-G-ATC--TGGAGCATCATCGGAGAGCCAAACCGACGGCATTAGGGGTTCCGACGA
* *
13849383 TTGGGGGGGTCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
254 TTGGGGGGGCCAGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
13849448 TGCCCTCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
319 TGCCCTCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
* * *
13849513 GGTTTGCTTCCAATAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAACGGTCACAAAAT
384 GG-TTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAAC
* * *
13849578 CTTCTCCACTTCAGTTTTTTTATGCCAACAAAAATACAGGGATCACCTCTACCAAATTTGGGGAA
448 CTTCTCCACTTCAGTTTTTTTATGCAAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGAA
** * * * **
13849643 AAGCCTCTTTCTAAAAAAATTTTAAAAAATCTCGAATCGCAAAATGTTTTGAAAATAGTGAAAAA
513 AAGAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAA
* *
13849708 CAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTA
578 CAGAAAACGGGTCCTCCTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTA
* * * *
13849773 CAAGCCATAAAAATGGCATTGCCATGGCAGAAATATGAAGATATGGTTGAACCCACCTTCCATCC
643 CAAGCCATAAAAATGGCATGGCCATGGCAGAAATATGAAGATATGCTTGAACCCACCTACCACCC
13849838 GT
708 GT
* * *
13849840 TTGATCCCCAGCTTGCGCATTCTACCTCTCCGACTGACTGAG-CGCCCGCACGCTTATTTCGTGG
1 TTGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTAAGTC-CCCGCACGCTCATTTCGTGG
* * ** *
13849904 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGCGTTCATTCCCAGTCTAAGAT
65 GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAG
** *
13849969 TTTGAGCCACGGTGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTCACCCGGGGC
130 TTTGAGCCACGGTGCACA-CCTGGGCTCGGGCATATGCTGGTGCCACATTTTTTTCACCCGGGGC
* * * *
13850034 AC-CATC-G-TC-GGAGCATCGTCGGAGAGGCTAACCGACGGCATTGGGGGTTCCGACGATT-GG
194 ACACATCGGATCTGGAGCATCATCGGAGAGCCAAACCGACGGCATTAGGGGTTCCGACGATTGGG
*
13850094 GGGGCCAGGGGG-TGTGCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATA-TTGGCC
259 GGGGCCAGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCC
* * *
13850156 -CTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGGGCATTTGAGATTTTATAGG-TG
324 TCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTG
* *
13850219 CTGCTAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAACGGTCACAAAACCTTCTC
389 CTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAACCTTCTC
*
13850283 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCAAAAAAAAATACAAGGATCATCTCTACCA
454 CACTTC--------A---G----TTTTT-T-TATGCAAAAAAAAATACAAGGATCACCTCTACCA
** *
13850348 AATTTGGTTACAAA-AATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
502 AATTTGGGGA-AAAGAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* *
13850412 AATCA-TGAAAAATAGAAAACGGTTCCTCCTGCCACGAAACTTCACATGAAGGCTTAGGGGACCA
566 AAT-AGTGAAAAACAGAAAACGGGTCCTCCTGCCACGAAACTTCACATGAAGGCTTAGGGGACCA
* * * *
13850476 TTTTATGAATTTAGAAGCCATAAAAATGGCATGGGCATGGCAGAAATATGAAGATGTGCTTGAAC
630 TTGTATGAATTTACAAGCCATAAAAATGGCATGGCCATGGCAGAAATATGAAGATATGCTTGAAC
13850541 CCACCTACCACCCGT
695 CCACCTACCACCCGT
*
13850556 TCGATCC
1 TTGATCC
13850563 NNNNNNNNNN
Statistics
Matches: 634, Mismatches: 68, Indels: 43
0.85 0.09 0.06
Matches are distributed among these distances:
699 40 0.06
700 27 0.04
702 58 0.09
703 5 0.01
704 16 0.03
705 28 0.04
706 12 0.02
707 43 0.07
710 3 0.00
712 1 0.00
714 5 0.01
715 5 0.01
716 217 0.34
717 134 0.21
718 40 0.06
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (709 bp):
TTGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTAAGTCCCCGCACGCTCATTTCGTGGG
TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGT
TTGAGCCACGGTGCACACCTGGGCTCGGGCATATGCTGGTGCCACATTTTTTTCACCCGGGGCAC
ACATCGGATCTGGAGCATCATCGGAGAGCCAAACCGACGGCATTAGGGGTTCCGACGATTGGGGG
GGCCAGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCTC
TATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTGCT
GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAACCTTCTCCA
CTTCAGTTTTTTTATGCAAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGAAAAGAATCT
TTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAACAGAAAAC
GGGTCCTCCTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATGGCCATGGCAGAAATATGAAGATATGCTTGAACCCACCTACCACCCGT
Found at i:13851997 original size:26 final size:26
Alignment explanation
Indices: 13851968--13852020 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13851958 CCGATCCGAT
13851968 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13851994 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13852020 C
1 C
13852021 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13852378 original size:26 final size:26
Alignment explanation
Indices: 13852349--13852400 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13852339 CCGATCTGAT
13852349 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
13852375 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
13852401 TCAAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:13852574 original size:23 final size:23
Alignment explanation
Indices: 13852534--13852580 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
13852524 CGGTCCGATC
* *
13852534 TTAGACTGGGAATGAACTCTGTA
1 TTAGACTAGGAATGAACTCCGTA
* *
13852557 TTAGACTAGGCATTAACTCCGTA
1 TTAGACTAGGAATGAACTCCGTA
13852580 T
1 T
13852581 GACTAAGTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (23 bp):
TTAGACTAGGAATGAACTCCGTA
Found at i:13852938 original size:26 final size:26
Alignment explanation
Indices: 13852887--13852939 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13852877 CTGGTCCGAT
* * *
13852887 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
13852913 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
13852939 C
1 C
13852940 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:13853297 original size:26 final size:26
Alignment explanation
Indices: 13853268--13853319 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13853258 CGGTCCAGTA
*
13853268 TTAGAC-TGGGAATTAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
13853294 TTAGACATGGAATGAACTTCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
13853320 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:13853776 original size:26 final size:26
Alignment explanation
Indices: 13853735--13853787 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13853725 CCGATTTGAT
13853735 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13853761 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
13853787 C
1 C
13853788 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13854336 original size:183 final size:183
Alignment explanation
Indices: 13854134--13854487 Score: 448
Period size: 183 Copynumber: 1.9 Consensus size: 183
13854124 TGGGGCTTAG
* * * * *
13854134 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG-GGGTG-TTCAACC-AG
1 ACATGGAACGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGCGAGCGCTT-AACCGA-
* * * *
13854196 TCAGAGAGGCAGAATACGCAAGCCAGGGATCGGCCTGGTCCCCTCTACATGCTG-CTGGTCCTAC
64 CCAGAGAGGCAGAATACGCAAGCCA-GGATCGGCCCGGTCCCCCCTACATGCTGTC-GATCCTAC
*
13854260 TGTCGTAACCCTCAGTCCGATCCGATCTTAGACTAGG-AATGAACTTCATATGGTTAT
127 TGTCGTAACCCTCAGTCCGATCCAATCTTAGACT-GGAAATGAACTTCATATGGTTAT
*
13854317 ACATGGAACGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGCGAGCGCTTAGCCGACC
1 ACATGGAACGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGCGAGCGCTTAACCGACC
* ** * * * *
13854382 GGAGAGGCAGAATGTGTAAGCCAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTC
66 AGAGAGGCAGAATACGCAAGCCAGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCCTACTGTC
* *
13854447 GTAACCCTCAGTCTGGTCCAATCTTAGACTGGAAATGAACT
131 GTAACCCTCAGTCCGATCCAATCTTAGACTGGAAATGAACT
13854488 CCGTATGCCT
Statistics
Matches: 146, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
182 2 0.01
183 114 0.78
184 27 0.18
185 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (183 bp):
ACATGGAACGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGCGAGCGCTTAACCGACC
AGAGAGGCAGAATACGCAAGCCAGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCCTACTGTC
GTAACCCTCAGTCCGATCCAATCTTAGACTGGAAATGAACTTCATATGGTTAT
Found at i:13854821 original size:26 final size:26
Alignment explanation
Indices: 13854785--13854835 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13854775 TCGGTCTGAT
*
13854785 CTTAGACTGGGAATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
* *
13854811 CTTACACTGGGGATGAACTCCGTAT
1 CTTACACTGGGAATCAACTCCGTAT
13854836 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCGTATG
Found at i:13855192 original size:26 final size:26
Alignment explanation
Indices: 13855154--13855206 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13855144 CTGGTCTGAT
*
13855154 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
13855180 CTTAGACGT-GGAATAAACTCCGTATG
1 CTTAGAC-TAGGAATAAACTCCGTATG
13855206 C
1 C
13855207 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:13855342 original size:184 final size:185
Alignment explanation
Indices: 13854994--13855364 Score: 494
Period size: 185 Copynumber: 2.0 Consensus size: 185
13854984 TCCAGCTAGG
* * * * * *
13854994 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCGCACAG
* *** *
13855059 CCGACCAGGGAGGCAAAATTTGCAAGTCGGGGATCAGCCTGATTCCCCCCTGCGTGCTATCGATC
66 CCGACCAGAGAGGCAAAATGCACAAGTCGGGGATCAGCCTGAGTCCCCCCTGCGTGCTATCGATC
* ** *
13855124 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
131 CTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATAT
* * * *
13855179 GCTTAGACGTGGAATAAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATATGGGCGCACAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCGCACAG
* *
13855244 CCGACCAGAGAGGCAGAATGCACAAG-CTGGGGATCGGCCTG-GTCCCCCCTGCGTGCTATCGAT
66 CCGACCAGAGAGGCAAAATGCACAAGTC-GGGGATCAGCCTGAGTCCCCCCTGCGTGCTATCGAT
*** *
13855307 CCTGCTGCTGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
130 CCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATAT
13855363 GC
1 GC
13855365 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
184 72 0.45
185 88 0.55
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCGCACAG
CCGACCAGAGAGGCAAAATGCACAAGTCGGGGATCAGCCTGAGTCCCCCCTGCGTGCTATCGATC
CTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATAT
Found at i:13855895 original size:159 final size:158
Alignment explanation
Indices: 13855534--13855898 Score: 362
Period size: 158 Copynumber: 2.3 Consensus size: 158
13855524 AACTCCATAT
* * ** *
13855534 GCTTAGACATGGAATGAACTCTGTTTGCCTAGGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCATGAAACGAGAATGCGGGCACTCAG
*** * * * * * * *
13855599 CCGATTGGAGAGGCAGAATGCGTAAGCTGGGGACCGGCCCGATCCCCCCTTCGTGCTGTCGATCT
66 CCGATCAAAGAGGCAGAATGCGTAAGCCGGGGACCGACCCGATCCCCCCTGCATACTGCCGATCC
* *
13855664 TGCTGCCACAACCCTTGATCTGATCTGA
131 TGCTGCCACAACCCTTGATCTCAGCTGA
** * *** * * *
13855692 TATTAGAC-TGGGAATGAACTCCGTATCCCTAATTCAACCCATGAAATGAGAATTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAGGCCAACCCATGAAACGAGAATGCGGGCACTCA
* *
13855756 GCC-AGTCAAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCTGCATACTGCCTG
65 GCCGA-TCAAAGAGGCAGAATGCGTAAGCCGGGGACCGACCCGATCCCCC-CTGCATACTGCC-G
* *
13855820 -TCCTGTTGCCACAACCCTTTG-TC-CAGCTAGG
127 ATCCTGCTGCCACAACCC-TTGATCTCAGCT-GA
*
13855851 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCATGAAACG
13855899 GGTGTGTGGG
Statistics
Matches: 162, Mismatches: 38, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 91 0.56
159 64 0.40
160 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCATGAAACGAGAATGCGGGCACTCAG
CCGATCAAAGAGGCAGAATGCGTAAGCCGGGGACCGACCCGATCCCCCCTGCATACTGCCGATCC
TGCTGCCACAACCCTTGATCTCAGCTGA
Found at i:13856045 original size:26 final size:26
Alignment explanation
Indices: 13856009--13856061 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13855999 CCGGTCTAAT
13856009 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* * *
13856035 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
13856061 C
1 C
13856062 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:13856516 original size:157 final size:157
Alignment explanation
Indices: 13856228--13856518 Score: 372
Period size: 157 Copynumber: 1.9 Consensus size: 157
13856218 GCTTAGACAT
* * **
13856228 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGATCGAGA
1 GGAATGAACACTGTATGCCAAAGCCAACAAACGAAACGAGCGTACGAGCGCTCAGCCGATCGAGA
* * *
13856293 GGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTCTGCATGCTGTCGATCCTGCTACCGCAA
66 GGCAGAATCCGCAAGCCAGGGATCGACCCAGTCCCCTCTGCATGCTGTCGATCCTCCTACCACAA
13856358 CCCTCAATCTGGTCCGATCTTAGATTG
131 CCCTCAATCTGGTCCGATCTTAGATTG
* * * * *
13856385 GGAATGAACACTGTATGCCAAAGTCAACAAACGAAACGAGCGTGCGAGCGTTGAGCCTA-CTGAG
1 GGAATGAACACTGTATGCCAAAGCCAACAAACGAAACGAGCGTACGAGCGCTCAGCCGATC-GAG
* ** * * *
13856449 AGGCATAATCCGCAAGCTGGGGATTGA-CCTGATCCCCCTCTGCATGCTGTCGATCC-CCTGCCA
65 AGGCAGAATCCGCAAGCCAGGGATCGACCCAG-T-CCCCTCTGCATGCTGTCGATCCTCCTACCA
13856512 CAACCCT
128 CAACCCT
13856519 TGGTTCGGTT
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
156 4 0.04
157 87 0.77
158 22 0.19
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
GGAATGAACACTGTATGCCAAAGCCAACAAACGAAACGAGCGTACGAGCGCTCAGCCGATCGAGA
GGCAGAATCCGCAAGCCAGGGATCGACCCAGTCCCCTCTGCATGCTGTCGATCCTCCTACCACAA
CCCTCAATCTGGTCCGATCTTAGATTG
Found at i:13856537 original size:157 final size:157
Alignment explanation
Indices: 13856195--13856550 Score: 344
Period size: 157 Copynumber: 2.3 Consensus size: 157
13856185 GGTCCTGCTT
** ** * * **
13856195 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAATCTGGTTGGGGCTTAGACATGGAATGAACACTGTATGCCAAAGCCAACAAAC
*
13856260 GAAACGAGCGTACGAGCGCTCAGCCGATCGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGT
66 GAAACGAGCGTACGAGCGCTCAGCCGATCGAGAGGCAGAATCCGCAAGCCAGGGATCGACCCAGT
*
13856325 CCCCTCTGCATGCTGTCGATCCTGCTA
131 CCCCTCTGCATGCTGTCGATCCTCCTA
* ** ** * *
13856352 CCGCAACCCTCAATCTGGTCCGATCTTAGA-TTGGGAATGAACACTGTATGCCAAAGTCAACAAA
1 CCACAACCCTCAATCTGGTTGGGGCTTAGACAT-GGAATGAACACTGTATGCCAAAGCCAACAAA
* * * * * ** * *
13856416 CGAAACGAGCGTGCGAGCGTTGAGCCTA-CTGAGAGGCATAATCCGCAAGCTGGGGATTGA-CCT
65 CGAAACGAGCGTACGAGCGCTCAGCCGATC-GAGAGGCAGAATCCGCAAGCCAGGGATCGACCCA
*
13856479 GATCCCCCTCTGCATGCTGTCGATCC-CCTG
129 G-T-CCCCTCTGCATGCTGTCGATCCTCCTA
*** * *
13856509 CCACAACCCTTGGT-TCGGTTGGGGCTTAGACATTGAGTGAAC
1 CCACAACCCTCAATCT-GGTTGGGGCTTAGACATGGAATGAAC
13856551 TCCCCATGCC
Statistics
Matches: 155, Mismatches: 38, Indels: 12
0.76 0.19 0.06
Matches are distributed among these distances:
156 6 0.04
157 126 0.81
158 23 0.15
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CCACAACCCTCAATCTGGTTGGGGCTTAGACATGGAATGAACACTGTATGCCAAAGCCAACAAAC
GAAACGAGCGTACGAGCGCTCAGCCGATCGAGAGGCAGAATCCGCAAGCCAGGGATCGACCCAGT
CCCCTCTGCATGCTGTCGATCCTCCTA
Found at i:13856767 original size:315 final size:314
Alignment explanation
Indices: 13856214--13856787 Score: 708
Period size: 315 Copynumber: 1.8 Consensus size: 314
13856204 TCGGTCTGAC
*** *
13856214 TGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGC
1 TGGGGCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGAACGTACGAGCGC
* *
13856279 TCAGCCGATCGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTCTGCATGCTGTCGA
66 TCAACCGATCGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTCTACATGCTGTCGA
* * * * *
13856344 TCCTGCTACCGCAACCCTCAATCTGGTCCGATCTTAGATTGGGAATGAACACTGTATGCCAAAGT
131 TCCTACTACCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACACCGTATGCCAAAGT
* * * ** * * *
13856409 CAACAAACGAAACGAGCGTGCGAGCGTTGAGCCTACTGAGAGGCATAATCCGCAAGCTGGGGATT
196 CAACAAACAAAACGAGCATGCGAGCGTTCAGCAGACAGAGAGGCAGAATCCGCAAGCCGGGGATT
13856474 GACCTGATCCCCCTCTGCATGCTGTCGATCCCCTGCCACAACCCTTGGTTCGGT
261 GACCTGATCCCCCTCTGCATGCTGTCGATCCCCTGCCACAACCCTTGGTTCGGT
* * * * * *
13856528 TGGGGCTTAGACATTGAGTGAACTCCCCATGCCTAAGCTAACCCACGAAACGAACGTGCGGGTGC
1 TGGGGCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGAACGTACGAGCGC
* * * * * *
13856593 TCAACTGACTGGAGAGGTAGAATGCGTAAGCC-GAGGATC-AGCCCGGTCCTCCT-TACGTGCTG
66 TCAACCGA-TCGAGAGGCAGAATGCGCAAGCCAG-GGATCGA-CCCAGTCC-CCTCTACATGCTG
* * * *
13856655 TCGATCCTACTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGGATGAACTCCGTATGCCT
127 TCGATCCTACTACCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACACCGTATGCCA
** * *
13856720 AAGTCAACCCACAAAACGAGCATGCG-GACG-TCAGCAGACCAGAGAGGCAGGATGCGCAAGCCG
192 AAGTCAACAAACAAAACGAGCATGCGAG-CGTTCAGCAGA-CAGAGAGGCAGAATCCGCAAGCCG
13856783 GGGAT
255 GGGAT
13856788 CGAATGGATG
Statistics
Matches: 215, Mismatches: 39, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
314 69 0.32
315 143 0.67
316 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (314 bp):
TGGGGCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGAACGTACGAGCGC
TCAACCGATCGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTCTACATGCTGTCGA
TCCTACTACCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACACCGTATGCCAAAGT
CAACAAACAAAACGAGCATGCGAGCGTTCAGCAGACAGAGAGGCAGAATCCGCAAGCCGGGGATT
GACCTGATCCCCCTCTGCATGCTGTCGATCCCCTGCCACAACCCTTGGTTCGGT
Found at i:13857437 original size:26 final size:26
Alignment explanation
Indices: 13857399--13857451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13857389 GGCTCAAACT
*
13857399 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13857425 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13857451 C
1 C
13857452 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13858001 original size:26 final size:26
Alignment explanation
Indices: 13857951--13858003 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13857941 CCAATTTGAT
* **
13857951 CTTAGACAGGGAATGAACTTTGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
*
13857977 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
13858003 C
1 C
13858004 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:13858483 original size:26 final size:26
Alignment explanation
Indices: 13858454--13858506 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13858444 CCGGTCTGAT
*
13858454 CTTAGACTAGGAATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
13858480 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
13858506 C
1 C
13858507 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:13858782 original size:355 final size:349
Alignment explanation
Indices: 13858136--13858957 Score: 810
Period size: 355 Copynumber: 2.3 Consensus size: 349
13858126 CTAGTCCAAT
* * * *
13858136 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGC-TTTCGGGTGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTAT-GGGCGCTCAG
** * * * *
13858200 TAGGTCGGAGATGCATAATGCACAAGCTGGGGATCAGCCCGAT--CCCTCTCTGCGTGCTGCCGG
65 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTCTGCGTGCTGCCGG
* *
13858263 TCCAACCGCCACAACCCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
130 TCCAACCACCACAACCCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * ** * * * *
13858328 CCAACCCACGAAATGGGGGTGTGGGTGCTTAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGAGGA
195 CCAACCCACGAAACGAGCGTACGGATGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGA
* *
13858393 TCGACCCGATCCCTACTGCGTGTTGCCGAT-C-CT-G-CT-AT-CGCAACCCTCGGTCCGGTCTG
260 TCGACCCGATCCCTACTGC--G-TGCCAATCCGCTCGTCTGATCCGCAACCCTCGGTCCGATCTG
*
13858452 ATCTTAGACTAGGAATAAACTCTGTATG
322 ATCTTAGACTAGGAATAAACTCCGTATG
* * *
13858480 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTCAGC
*
13858545 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAACTCGATCCCCCTCTGTGTGCTGCCGATCC
66 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTC----T-CTG-CG-T--
** * * * **
13858610 CGCTGCCGGTCCTGCTACCCCAA-CCCTCGATCATACTGGGGCTTAGACATGGAATGAACTCTGT
122 -GCTGCCGGTCCAACCACCACAACCCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCT
* * * * *
13858674 ATGCCTAAGCCAACCCATGAAACGAGCGTACGGATGCTCAGTC-GATCGAAGTGGTAGAATGCGC
186 ATGCCTAAGCCAACCCACGAAACGAGCGTACGGATGCTCAGCCAG-CCGAAGAGGCAGAATGCGC
*
13858738 AAGCC-AGGGATCGACCCGATTTTCCCTACATGC-TGCCAATCCTGCTGCCGGTTCTGCTGCCGC
250 AAGCCGA-GGATCGACCCGA---TCCCTAC-TGCGTGCCAATCC-GCT--C-G-TCTGAT-CCGC
* *
13858801 AACCCTTGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATG
304 AACCCTCGGTCCGATCTGATCTTAGACTAGGAATAAACTCCGTATG
** * * * **
13858847 CTTAGACAT-GGAATGAACTCCACATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTCAG
* * * *
13858911 CCGG-CGGAAAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC
65 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCC
13858958 CCTGCGCATT
Statistics
Matches: 389, Mismatches: 57, Indels: 42
0.80 0.12 0.09
Matches are distributed among these distances:
344 91 0.23
345 2 0.01
346 5 0.01
350 1 0.00
351 3 0.01
352 2 0.01
353 1 0.00
354 2 0.01
355 108 0.28
356 18 0.05
358 9 0.02
359 3 0.01
362 1 0.00
364 2 0.01
365 1 0.00
366 38 0.10
367 101 0.26
368 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (349 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTCAGC
CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTCTGCGTGCTGCCGGT
CCAACCACCACAACCCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAACGAGCGTACGGATGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGAT
CGACCCGATCCCTACTGCGTGCCAATCCGCTCGTCTGATCCGCAACCCTCGGTCCGATCTGATCT
TAGACTAGGAATAAACTCCGTATG
Found at i:13858873 original size:26 final size:26
Alignment explanation
Indices: 13858821--13858873 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13858811 CCGATCTGAT
**
13858821 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCACATG
13858847 CTTAGAC-ATGGAATGAACTCCACATG
1 CTTAGACTA-GGAATGAACTCCACATG
13858873 C
1 C
13858874 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:13859347 original size:158 final size:156
Alignment explanation
Indices: 13858843--13859348 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 156
13858833 ATGAACTCCG
* *
13858843 TATGCTTAGACAT-GGAATGAACTCCACATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGC
1 TATG-TTAGA-ATGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGC
* * * * *** *
13858907 TCAGCCGGCGGAAAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGCATTGTCG
64 TCAGCCGGCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCCTGCGTGCTGCCG
** * * *
13858972 ATCCTATTGTCGTAACCCTCGATCCGGTCC
128 ATCCTGCTGCCGCAACCCTCGATCTGGT-C
* * * * * * * * * *
13859002 AATCTTAGACTGAGAATGAACTCTGTACGCCTACGTCAACCCACGAAATGAGCGTGCGGGCGCTG
1 TATGTTAGAATGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTC
* * * *
13859067 AGCCGACCAGAGAGGCATAATGTGCAAGCCGGGGACCGACCCGGTCCCCCTCTGCGTGCTGCCGA
66 AGCCG-GCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCGA
* * * *
13859132 TCCCGCTGCCACAACCCTTGCTCTGG-C
129 TCCTGCTGCCGCAACCCTCGATCTGGTC
* * * * *
13859159 TAGGGCTTAGACAT-GGAATGAACTCGATATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGTG
1 TA-TG-TTAGA-ATGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCG
* * *
13859223 CTCAACCGGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGATCCGGTCCCCCCTGCGTGCTGCC
63 CTCAGCCGG-CAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCC
13859288 GATCCTGCTGCCGCAACCCTC-AGTCTGGTC
127 GATCCTGCTGCCGCAACCCTCGA-TCTGGTC
*
13859318 TGATGTTAGATTGGGAATGAACTCTATATGC
1 T-ATGTTAGAATGGGAATGAACTCTATATGC
13859349 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 62, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 116 0.42
159 152 0.55
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
TATGTTAGAATGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTC
AGCCGGCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATC
CTGCTGCCGCAACCCTCGATCTGGTC
Found at i:13859373 original size:26 final size:26
Alignment explanation
Indices: 13859323--13859374 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13859313 TGGTCTGATG
* *
13859323 TTAGATTGGGAATGAACTCTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
13859349 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
13859375 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:13859972 original size:11 final size:11
Alignment explanation
Indices: 13859956--13859987 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
13859946 TTAGGCTCTT
13859956 CGACGATGGTC
1 CGACGATGGTC
13859967 CGACGATGGTC
1 CGACGATGGTC
13859978 CGACGATGGT
1 CGACGATGGT
13859988 GCCCTGGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.25, G:0.38, T:0.19
Consensus pattern (11 bp):
CGACGATGGTC
Found at i:13860093 original size:26 final size:26
Alignment explanation
Indices: 13860055--13860105 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13860045 GGCTCAAACT
*
13860055 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13860081 CTTAGACAT-GAAATGAACTCCGTAT
1 CTTAGAC-TGGAAATGAACTCCGTAT
13860106 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13860427 original size:26 final size:26
Alignment explanation
Indices: 13860398--13860450 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13860388 CCGGTTCGAT
* *
13860398 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
13860424 CTTAGACTAGGGATAAACTCCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
13860450 C
1 C
13860451 CCCCTGCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:13860853 original size:26 final size:26
Alignment explanation
Indices: 13860817--13860869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13860807 CTGGTCTGAT
*
13860817 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13860843 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13860869 C
1 C
13860870 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13861051 original size:26 final size:26
Alignment explanation
Indices: 13861013--13861062 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13861003 CTGGTCTGAT
*
13861013 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13861039 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
13861063 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13862583 original size:26 final size:26
Alignment explanation
Indices: 13862545--13862597 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13862535 GGCTTAAAAT
13862545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13862571 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13862597 C
1 C
13862598 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13862985 original size:159 final size:158
Alignment explanation
Indices: 13862570--13862985 Score: 385
Period size: 159 Copynumber: 2.6 Consensus size: 158
13862560 AACTCCGTAT
* *
13862570 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
13862635 TCGGCATGAGAGGCAGAATGCACAAG-CAGGGGATCAGCCTGGTCCCCCCTACTTGCTGTCGATC
66 CCGGCAGGAGAGGCAGAATGCGCAAGTCA-GGGATCAGCCCGATCCCCCCTACGTGCTGTCAATC
** ***
13862699 CTGCTGTTGCAACCCTCAGTCTGGTCCAA
130 CCACTGCCACAACCCTCAGTCTGGTCCAA
* * * * * * *
13862728 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTC-AACCTATGAAACGAGCATTCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAACC-ATGAAACGAGCGTGCGGGTGCTC
** * * * * *
13862791 AGCCGGTTGAAGAGGCATAATGCGCAA-TCTGGGGATC-GACCCGATCCTCCTCTGCGTGCTGTC
64 AGCCGGCAGGAGAGGCAGAATGCGCAAGTC-AGGGATCAG-CCCGATCC-CCCCTACGTGCTGTC
* **
13862854 AATCCCACTGCCACAACCCTCGGTCTGG-CCGGG
126 AATCCCACTGCCACAACCCTCAGTCTGGTCC-AA
* * * *
13862887 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTCAG
* * *
13862952 CCGGCCGGAGAGGTAGAATGCGTAAGTCAGGGAT
66 CCGGCAGGAGAGGCAGAATGCGCAAGTCAGGGAT
13862986 TGGCCCAGTC
Statistics
Matches: 199, Mismatches: 49, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.03
158 83 0.42
159 104 0.52
160 7 0.04
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTCAG
CCGGCAGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCAATCC
CACTGCCACAACCCTCAGTCTGGTCCAA
Found at i:13863189 original size:26 final size:26
Alignment explanation
Indices: 13863151--13863203 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13863141 GGCTCAAAAT
**
13863151 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACACGGAATGAACTCCGCATG
*
13863177 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGCATG
13863203 C
1 C
13863204 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGCATG
Found at i:13863424 original size:26 final size:26
Alignment explanation
Indices: 13863387--13863438 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13863377 AAATGATTTT
13863387 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
*
13863413 GACTGGGGATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
13863439 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTTA
Found at i:13863608 original size:26 final size:26
Alignment explanation
Indices: 13863579--13863631 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13863569 CCGATCCGAT
13863579 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13863605 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13863631 C
1 C
13863632 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13863736 original size:196 final size:196
Alignment explanation
Indices: 13863387--13863843 Score: 485
Period size: 196 Copynumber: 2.4 Consensus size: 196
13863377 AAATGATTTT
* * * *
13863387 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCCACGG
1 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
** * * *
13863452 AACGAGCGTGCGGGCGGTCAGAAGGTCGGAGAGGCAGAATACACAAGCCAAGGATCGGCTCGATC
66 AACGAGCGTGCGGGCACTCAGAAGGCCGGAGAGGCAGAATACACAAGCCAAGGATCGACCCGATC
** *
13863517 CCCCCTGTGTGCTATCGATCCTGCTGTTGGTCCTGCTACCGCAAGCCTCGATCCGATCCGATCTT
131 CCCCCTGCATGCTATCAATCCTGCTGTTGGTCCTGCTACCGCAAGCCTCGATCCGATCCGATCTT
13863582 A
196 A
*
13863583 GACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATG
1 GACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * ** * *
13863647 AAACGAGCGTGCGGGTACTCA-ATCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGG
65 AAACGAGCGTGCGGGCACTCAGA-AGGCCGGAGAGGCAGAATACACAAGCCAAGGATCGACCCGA
* * * *
13863711 TCCCCCCTGCATGCTGTCAAT-C--C---T-G--CTG-T--CGCAACCCTC-AGTCCGGTTCGAT
129 TCCCCCCTGCATGCTATCAATCCTGCTGTTGGTCCTGCTACCGCAAGCCTCGA-TCCGATCCGAT
13863763 CTTA
193 CTTA
* * * *
13863767 GACTGGGAATGAACTCCGTATGCTTAGATTAGACTGGGGAGGAACTCCATATGCCTAAGTCAACC
1 GACTGGGAATGAACTCCGTATGC-----TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
13863832 CACGAAACGAGC
61 CACGAAACGAGC
13863844 ATTCGTGCGC
Statistics
Matches: 223, Mismatches: 29, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
183 1 0.00
184 45 0.20
186 1 0.00
187 3 0.01
188 1 0.00
189 43 0.19
190 1 0.00
193 1 0.00
195 2 0.01
196 124 0.56
197 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (196 bp):
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGCACTCAGAAGGCCGGAGAGGCAGAATACACAAGCCAAGGATCGACCCGATC
CCCCCTGCATGCTATCAATCCTGCTGTTGGTCCTGCTACCGCAAGCCTCGATCCGATCCGATCTT
A
Found at i:13864899 original size:159 final size:159
Alignment explanation
Indices: 13864514--13865017 Score: 453
Period size: 159 Copynumber: 3.2 Consensus size: 159
13864504 AACTCCGTAT
* *
13864514 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
13864579 CAGGCCAGAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATCCACCCTTGCATGCTGTCGATC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCACCCTTGCATGCTGCCGATC
* *
13864644 CTGCTGCCGCAACCCTCGGTTCGATCCAA
131 CTGCTACCACAACCCTCGGTTCGATCCAA
* * * * * * *
13864673 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACTCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
13864737 GCCGACCAAAGAGGCATAATGCGCAAGTCGGGGATTGGTCTGATCC-CCCTCTGCGTGCTGCCGG
65 GCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCACCCT-TGCATGCTGCCGA
* * ***
13864801 TCCTGCTACCACAACCCTCGGTCTGGCT-GGG
129 TCCTGCTACCACAACCCTCGGT-TCGATCCAA
** * ** *
13864832 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATTAAATG-GACGTGCAAGTGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAG-CGTGCGGGCGCTCA
* * * * *** * * *
13864896 GCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCC-TTATCGCGTGCTGTCGAT
65 GCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCACCCTTGCATGCTGCCGAT
* * ** * *
13864960 CTTGCTACCGCAACCCTCTATCCGATCCGA
130 CCTGCTACCACAACCCTCGGTTCGATCCAA
* *
13864990 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
13865018 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 66, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 59 0.22
159 206 0.76
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCACCCTTGCATGCTGCCGATC
CTGCTACCACAACCCTCGGTTCGATCCAA
Found at i:13865042 original size:26 final size:26
Alignment explanation
Indices: 13864991--13865043 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13864981 CCGATCCGAT
*
13864991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13865017 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
13865043 C
1 C
13865044 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13865484 original size:170 final size:167
Alignment explanation
Indices: 13865073--13865521 Score: 495
Period size: 170 Copynumber: 2.6 Consensus size: 167
13865063 CAGTGAACGG
* ** *
13865073 GCGCTCAGCCGGTCGGAGAGGCATAATACATAAGCCGGGGATCAACTTGGTCCCCCTCTGCATGC
1 GCGCTCAGCCGGTCGGAGAGGCATAATGCATAAGCCGGGGATCAAC-CCGTCCCCC-CTGCGTGC
* * * *
13865138 TGTCGATCGCGCTGCTGGTCTTGCAACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATG
64 TGTCGATC-CGCTGCTGGTCCTGCTACCACAACCTTCGATCCGACTGGGGCTTAGACATGGAATG
* * * **
13865203 AACTCCCTATGCCTAAGCAACCCACAAAATGGGCTTGCGG
128 AACTCCATATGCCTAAGCAACCCACAAAATGAGCGTGCAA
* * ** * *
13865243 GCGCTCAACCGGTCGGAGAGGCATAACGCGCAAGCCGGGGATCAACCCGATCCCTCTCTGTGTGC
1 GCGCTCAGCCGGTCGGAGAGGCATAATGCATAAGCCGGGGATCAACCCG-TCCC-CCCTGCGTGC
* *
13865308 TGTCGATCTCGCTGCCGGTCCTGCTACCACAACCTTCTG-TTCGACTGGGGCTTAGACATGGAAT
64 TGTCGATC-CGCTGCTGGTCCTGCTACCACAACCTTC-GATCCGACTGGGGCTTAGACATGGAAT
** *
13865372 GAACTCCATATGCCTAAGCCAACCTTCGAAATGAGCGTGCAA
127 GAACTCCATATGCCTAAG-CAACCCACAAAATGAGCGTGCAA
* * * * * ** *
13865414 GTGCTCAGCCAGTCGGAGAGGCAGAATGCATAAGTCGGGGACCGGCCCAGTCCCCCCTGCGTGTT
1 GCGCTCAGCCGGTCGGAGAGGCATAATGCATAAGCCGGGGATCAACCC-GTCCCCCCTGCGTGCT
* *
13865479 GTCGATCCTGCTGCTGGTCCTGCTACCGCAACCTTCGGTCCGA
65 GTCGATCC-GCTGCTGGTCCTGCTACCACAACCTTCGATCCGA
13865522 TCCGATCTTA
Statistics
Matches: 230, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
169 3 0.01
170 167 0.73
171 59 0.26
172 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.20
Consensus pattern (167 bp):
GCGCTCAGCCGGTCGGAGAGGCATAATGCATAAGCCGGGGATCAACCCGTCCCCCCTGCGTGCTG
TCGATCCGCTGCTGGTCCTGCTACCACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAAC
TCCATATGCCTAAGCAACCCACAAAATGAGCGTGCAA
Found at i:13865566 original size:26 final size:26
Alignment explanation
Indices: 13865528--13865580 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13865518 CCGATCCGAT
*
13865528 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13865554 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
13865580 C
1 C
13865581 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13866914 original size:158 final size:156
Alignment explanation
Indices: 13866447--13866914 Score: 413
Period size: 158 Copynumber: 3.0 Consensus size: 156
13866437 GAACTCGTAT
* *
13866447 GCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * * ** **
13866512 TCGGCTGGAGAGGCAGAATACGTAAGCTGGGGATTGACCTGGTCCCCCCTGCGTGCTGCCAATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCTATGCGTGCT-CTGATCC
** * *
13866577 TGCTGCTGCAACCCTC-ATTCTGGTCTGA
130 TGCTGCCACAACCCTCGA-TC-CGACTGA
* * * * * * *
13866605 TCTTAGAC-TGGGAATGAACT-CCTATGCATAAGTCAACCCACGAAATGATCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
13866668 GCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGA-TGGCTCGATCCCCCTATGTGTGCTGTCGGT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGT-CCCCTATGCGTGCTCT-GAT
* * * * *
13866732 CCCGCTACCACAACCCTTGGTCCGACTAGG
128 CCTGCTGCCACAACCCTCGATCCGACT-GA
* * *
13866762 GCTTAGACATGAAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
13866827 CCGACCGAAAAGGTAGAATGTGCAAGCCAGGGATTGGCCCGGTCCCCTTTGCGTGCTACTGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCTATGCGTGCT-CTGATCC
*
13866892 TGCTGCCACAAACCTCGATCCGA
130 TGCTGCCACAACCCTCGATCCGA
13866915 TTCAATCTTA
Statistics
Matches: 236, Mismatches: 65, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
156 8 0.03
157 105 0.44
158 115 0.49
159 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCTATGCGTGCTCTGATCCT
GCTGCCACAACCCTCGATCCGACTGA
Found at i:13866950 original size:26 final size:26
Alignment explanation
Indices: 13866921--13866973 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13866911 CCGATTCAAT
* *
13866921 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13866947 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13866973 C
1 C
13866974 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13867812 original size:26 final size:26
Alignment explanation
Indices: 13867783--13867835 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13867773 CCGACTCAAT
13867783 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
13867809 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13867835 C
1 C
13867836 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13868543 original size:159 final size:159
Alignment explanation
Indices: 13868190--13868633 Score: 468
Period size: 159 Copynumber: 2.8 Consensus size: 159
13868180 TCCGTATGCG
* * * * *
13868190 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGTTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGCCG
* * * * * *
13868255 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTT-TGCGTGCTGTCGATCCTG
66 ATCGGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGCCGATCCCG
* * * * * *
13868319 TTGTCGCAACCTTTGGTCTAGTTCGATCT
131 CTGCCACAACCTTCGGTCTAGCTCGAGCT
* * * *
13868348 TAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCAGGTGCTGAGCC
1 TAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGCC
* * * * *
13868412 AACCGAAAAGGCATAATACGCAAGTCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGCCGATCCC
65 GATCGGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGCCGATCCC
* * * *
13868477 GCTGCCACAA-CTCTCGAT-TCGGCTGGGGCT
130 GCTGCCACAACCT-TCGGTCT-AGCTCGAGCT
* * * *
13868507 TAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGCCG
* * * *
13868572 ATCGGAGAGGCAGAATACTG-AAGTCGGGGATCGGCCCTGTCCCC-CCTGCGTGCTTCCGATCC
66 ATCGGAGAGGCAGAATAC-GCAAGTCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGCCGATCC
13868634 TACTATTGAA
Statistics
Matches: 233, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 109 0.47
159 119 0.51
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGCCG
ATCGGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGCCGATCCCG
CTGCCACAACCTTCGGTCTAGCTCGAGCT
Found at i:13868699 original size:26 final size:26
Alignment explanation
Indices: 13868663--13868715 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13868653 CCGGTCCAAT
*
13868663 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13868689 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13868715 C
1 C
13868716 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13869121 original size:867 final size:867
Alignment explanation
Indices: 13866425--13869557 Score: 3338
Period size: 867 Copynumber: 3.6 Consensus size: 867
13866415 CTCAAACTCC
*
13866425 TAGACTGGGAATGAAC-TCGTATGCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * * * * *
13866489 GAAACGAGCGTGCGGGCGCTCAGTCGGCTGGAGAGGCAGAATACGTAAGCTGGGGATTGACCTGG
66 AAAACGAGCGTGCAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
* * * *
13866554 TCCCCCCTGCGTGCTGCCAATCCTGCTG-CTGCAACCCTCATTCTGGTCTGATCTTAGACTGGGA
131 TCCCCCCTGCGTGCTGTCGATCCTGCTGTCTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGA
* * * * **
13866618 ATGAACTCC-TATGCATAAGTCAACCCACGAAATGATCGTGCGGGCGTTGAGCCGGTCGAAGAGG
196 ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGAAGAGG
* * * * *
13866682 CATAATGCGCAAGCCAGGGATGGCTCGATCCCCCTATGTGTGCTGTCGGTCCCGCTACCACAACC
261 CATAATGCGCAAGCCAGGGATGACCCGATCCCCCTATGCGTGCTGCCGGTCCCGCTGCCACAACC
* * * * * * *
13866747 CTTGGTCCGACTAGGGCTTAGACATGAAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAG
326 CTCGATTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
* * * * **
13866812 CGTGCGGGCGCTCAGCCGACCGAAAAGGTAGAATG-TGCAAGCCAGGGATTGGCCCGGTCCCCTT
391 CGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCTGCAAGCCGGGGATCGGCCCGGTCCCCCC
* * * * * * * *
13866876 TGCGTGCTACTGATCCTGCTGCCACAAACCTC-GATCCGATTCAATCTTAGACTGGGAGTGAACT
456 TGCGTGCTTCCGATCCTACTTCCA-AACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACT
* * *
13866940 CCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGT
519 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGT
* * * * * *
13867005 GCTTAGTCGGCCGGAGAGGCATAATACGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGT-TTC
584 GCTCAGTCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAG-CCGATCCCCCTCTACATGTT-
* * *
13867069 ACCGATCCCACTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGA
647 GCCGATCCCACTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGA
* * * *
13867134 ACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAACCGACCAGAGA-ACAGA
712 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGACCGGAGAGGCAGA
* * * * * *
13867198 ATGCGCAAGTCGGGGATCAG-CTCGATCCCCCCTACGTGCTGCCGATCCTG-TGGCTGGTCTTGC
777 ATGTGCAAGCCGGGGATCGGCCT-GATCCCCCCTGCGTGCTACCGATCCTGCT-GCTGGTCCTGC
* * *
13867261 TGCCACAACCCTCGATCTGTTCGGACCT
840 TGCCACAACCCTCGATCTGATCCGATCT
* * * *
13867289 TAAACTGGGAATGAACTTTGTATGCTCAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCCA
1 TAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCCA
* * ** *
13867354 CAAAACGAACGTGC-GGGAGCTCAGTTGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCC
65 CAAAACGAGCGTGCAGGCA-CTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
* * *
13867418 GATCCCCCCTGCGTGCTATCGATCCTGCTGTC-GCAACCCTCAGTC-CGATCTAATCTTAGACTG
129 GATCCCCCCTGCGTGCTGTCGATCCTGCTGTCTGCAACCCTCAGTCTAG-TCTGATCTTAGACTG
* * * * *
13867481 GAAATGAACTCTGTATGCCTAAGTCATCCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGGAG
193 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGAAG
* * * * ** *
13867546 AGGCATAATGCGCAAGCC-GGG--GA-TCG-GCCCCCTATGCATGTTGCCGGTCTTGTTGCCACA
258 AGGCATAATGCGCAAGCCAGGGATGACCCGATCCCCCTATGCGTGCTGCCGGTCCCGCTGCCACA
* * * **
13867606 ACCCTTG-GTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATGCACGAAA
323 ACCCTCGATTC-GGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * * * *
13867670 CGGGCATGTGGGTGCTCAACCGACCAGAGAGGTAGAATGC-ACAAGCCGGGGATCGGCTCGGTCT
387 CGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCTGCAAGCCGGGGATCGGCCCGGTCC
* * * * ** *
13867734 CGCCTGGGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCC-GACTCAATCTTAGACTGGGAATG
452 CCCCTGCGTGCTTCCGATCCTACT-TCCAAACCCTCAGTCCGGTC-CAATCTTAGACTGGGAATG
* * * * **
13867798 AACTCCGTATGCTTAGACTGGGGATTAACTCTGTATGCCTAAGTCAACCCACGAAATGAGATTAC
515 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC
* * *
13867863 GAGCACTCAGCCGATCGGGGAGGTCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCTGG
580 G-G--GT--G-C--TC----A-GTCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCC-GA
* * * * * * *
13867928 TCCCCCTCTGCATGTTGCCAATCACGCTGTCGGTCCTGCTG-TACAACCCTCGGTCCGGCTGGGG
631 TCCCCCTCTACATGTTGCCGATCCCACTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGG
* * * * *
13867992 CTTAAACATGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAAC
696 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAAC
* ** * *
13868057 CGACCGGAAAGGCAGAATGTGCAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCT
761 CGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTACCGATCCT
* * *
13868122 GCTGCTAGTCCTGCTACCGCAACCCTCGATCTGATCCGATCT
826 GCTGCTGGTCCTGCTGCCACAACCCTCGATCTGATCCGATCT
* *
13868164 TAGACTGGGAATGAACTCCGTATGCGTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** *
13868229 AAAACGAGCATGCAGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
66 AAAACGAGCGTGCAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
** * * ** *
13868294 TCCCCTTTGCGTGCTGTCGATCCTGTTGTC-GCAACCTTTGGTCTAGT-TCGATCTTAGACTGAG
131 TCCCCCCTGCGTGCTGTCGATCCTGCTGTCTGCAACCCTCAGTCTAGTCT-GATCTTAGACTGGG
* * * * * * *
13868357 AATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCAGGTGCTGAGCCAACCGAAAAG
195 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGAAGAG
* * * * * * *
13868422 GCATAATACGCAAGTCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGCCGATCCCGCTGCCACAA
260 GCATAATGCGCAAGCCAGGGAT-GACCCGATCCCCCTATGCGTGCTGCCGGTCCCGCTGCCACAA
* * *
13868487 CTCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAAC-
324 CCCTCGATTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* * * * * * *
13868551 AGGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATACTG-AAGTCGGGGATCGGCCCTGTCCC
389 A-GCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCTGCAAGCCGGGGATCGGCCCGGTCCC
** * *
13868615 CCCTGCGTGCTTCCGATCCTACTATTGAAACTCTCTGTCCGGTCCAATCTTAGACTGGGAATGAA
453 CCCTGCGTGCTTCCGATCCTACT-TCCAAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAA
*
13868680 CTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
517 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
* * *
13868745 GTGCTCAGTCGGCCGAAGAGGCATAATGCGCAAGCTGGGGATTAGCTCGATCCCCCTCTACATGC
582 GTGCTCAGTCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGC-CGATCCCCCTCTACATGT
* *
13868810 TGTCGATCCCACTGCCAGTCCTGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATG
646 TGCCGATCCCACTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATG
* * * *
13868875 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAG
711 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGACCGGAGAGGCAG
* * * *
13868940 AATATGCAAGCCGGGGAAT-GGCCTGAT-CCCCCTGCATGCTATCGATCCTGCTGCTGGTCCTAC
776 AATGTGCAAGCCGGGG-ATCGGCCTGATCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTGC
* * * *
13869003 TGTCACAACCTTCGATCTGGTCTGATCT
840 TGCCACAACCCTCGATCTGATCCGATCT
* * *
13869031 TAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCCAT
1 TAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * ** * ** * ** * *
13869096 GAAATGAGCCTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGTACAAGTCGATGATTGGTCTGG
66 AAAACGAGCGTGCAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
** * * * * ** * *
13869161 TCCCCTATACGTGCTGTCGATCCTACT-ACTACAACCCTTGGTCCAGTCTGATCTTAGATTGGGA
131 TCCCCCCTGCGTGCTGTCGATCCTGCTGTCTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGA
* * * * ** *
13869225 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGTGGGCGCTGAGCCGGTCGGAGAGG
196 ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGAAGAGG
* * * * * * **
13869290 CATAATGCGCAAGTCAAGGATCGACCCGATCCCCTTCTGTGTGCTGCCGGTCCCACTGCTGCAAC
261 CATAATGCGCAAGCCAGGGAT-GACCCGATCCCCCTATGCGTGCTGCCGGTCCCGCTGCCACAAC
* *
13869355 CCTCGATTCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA
325 CCTCGATTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA
* * * * ** ** * * * *
13869420 TCGTGTGGGCCCTCAGTCGGTCGGAGAGAAAGAATGC-GTAAGCCGGTGATCGACCCGATCCCCC
390 GCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCTGCAAGCCGGGGATCGGCCCGGT-CCCC
* * *
13869484 CCTGCGTGCTGT-CGATCCTACTGCCACAACCCTCAGTCCGGTCCGATATTAGACTGGGAATGAA
454 CCTGCGTGCT-TCCGATCCTACTTCCA-AACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAA
*
13869548 CTTCGTATGC
517 CTCCGTATGC
13869558 CTAAGTCAAC
Statistics
Matches: 1879, Mismatches: 338, Indels: 100
0.81 0.15 0.04
Matches are distributed among these distances:
861 1 0.00
862 230 0.12
863 6 0.00
864 16 0.01
865 43 0.02
866 122 0.06
867 558 0.30
868 180 0.10
869 3 0.00
870 1 0.00
872 2 0.00
873 1 0.00
874 264 0.14
875 200 0.11
876 4 0.00
877 1 0.00
878 2 0.00
879 3 0.00
880 238 0.13
881 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (867 bp):
TAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
AAAACGAGCGTGCAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
TCCCCCCTGCGTGCTGTCGATCCTGCTGTCTGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGAAGAGG
CATAATGCGCAAGCCAGGGATGACCCGATCCCCCTATGCGTGCTGCCGGTCCCGCTGCCACAACC
CTCGATTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCTGCAAGCCGGGGATCGGCCCGGTCCCCCC
TGCGTGCTTCCGATCCTACTTCCAAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGC
TCAGTCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCGATCCCCCTCTACATGTTGCCG
ATCCCACTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTC
CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGACCGGAGAGGCAGAATGT
GCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTGCTGCCAC
AACCCTCGATCTGATCCGATCT
Found at i:13869674 original size:317 final size:317
Alignment explanation
Indices: 13869170--13869875 Score: 806
Period size: 317 Copynumber: 2.2 Consensus size: 317
13869160 GTCCCCTATA
* * ** * * * *
13869170 CGTGCTGTCGATCCTACTACTACAACCCTTGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCG
1 CGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCG
* *** * ***
13869235 TATGCCTAAGTCAACCCATGAAATGAGCATGTGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGC
66 TATGCCTAAGTCAACCCATGAAACGAGCATACAGCCGCTGAGCCAACCGGAGAGGCATAATGCGC
* ** * * ** ** *
13869300 AAGTCAAGGATCGACCCGATCCCCTTCTGTGTGCTGCCGGTCCCACTGCTGCAACCCTCGATTCG
131 AAGCCAAGGATCGACCCGATCCCCCACTGCGTACAACCGGTCCCACTGCCACAACCCTCGATCCG
* * * * **
13869365 GCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGATCGTGTGGG
196 ACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATTG-GCGTGCAGG
* ** * * * *
13869429 CCCTCAGTCGGTCGGAGAGAAAGAATGCGTAAGCCGGTGATCGACCCGATCCCCCCCTG
260 CCCTCAGCCAATCAGAGAGAAAGAATGCGTAAACCGGGGATCGACCCAAT-CCCCCCTG
*
13869488 CGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCCGATATTAGACTGGGAATGAACTTCG
1 CGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCG
* *
13869553 TATGCCTAAGTCAACCCATGAAACGAGCGTACAGCCGTTGAGCCAACCGGAGAGGCATAATGCG-
66 TATGCCTAAGTCAACCCATGAAACGAGCATACAGCCGCTGAGCCAACCGGAGAGGCATAATGCGC
* ** * * *
13869617 AAGCCGAGGATCGGTCCGATCCCCCACTGCGTACAATCGGTCCCGCTGCCACAACCCTCGGTCCG
131 AAGCCAAGGATCGACCCGATCCCCCACTGCGTACAACCGGTCCCACTGCCACAACCCTCGATCCG
13869682 ACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATTGGCGTGCAGGC
196 ACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATTGGCGTGCAGGC
* ** * *
13869747 GCTCAGCCAATCAGAGAGGCAGAATGCGTAAACCGGGGATCGGCCCAATCCCCGCTG
261 CCTCAGCCAATCAGAGAGAAAGAATGCGTAAACCGGGGATCGACCCAATCCCCCCTG
** * * * * *
13869804 CGTGCTACCAATCCTACTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACCTGGGAAATGAAC-T
1 CGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGA-CTGGG-AATGAACTT
13869868 CTGTATGC
64 C-GTATGC
13869876 TTAGATGGGG
Statistics
Matches: 323, Mismatches: 61, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
316 48 0.15
317 150 0.46
318 125 0.39
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (317 bp):
CGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCG
TATGCCTAAGTCAACCCATGAAACGAGCATACAGCCGCTGAGCCAACCGGAGAGGCATAATGCGC
AAGCCAAGGATCGACCCGATCCCCCACTGCGTACAACCGGTCCCACTGCCACAACCCTCGATCCG
ACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATTGGCGTGCAGGC
CCTCAGCCAATCAGAGAGAAAGAATGCGTAAACCGGGGATCGACCCAATCCCCCCTG
Found at i:13869755 original size:158 final size:158
Alignment explanation
Indices: 13869054--13869809 Score: 574
Period size: 159 Copynumber: 4.8 Consensus size: 158
13869044 AACTTCGTAT
* * * * *
13869054 GCTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCCATGAAATGAGCCTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * *** * * * ** * * * * *
13869119 CCGACCGGAGAGGCAGAATGTACAAGTCGATGATTGGTCTGGTCCCCTA-TACGTGCTGTCGATC
66 CCAATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCACTGCGTGCTGTCGGTC
* * * * *
13869183 CTACTACTACAACCCTTGGTCCAGTCT-GA
131 CCACTGCCACAACCCTCGGTCC-G-CTAGG
* * * * * ** *
13869212 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
** * * * * ** * *
13869276 GCCGGTCGGAGAGGCATAATGCGCAAGTCAAGGATCGACCCGATCCCCTTCTGTGTGCTGCCGGT
65 GCCAATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCACTGCGTGCTGTCGGT
** * *
13869341 CCCACTGCTGCAACCCTCGATTCGGCTAGG
130 CCCACTGCCACAACCCTCG-GTCCGCTAGG
* ** *
13869371 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGATCGTGTGGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* ** ** * *
13869436 TCGGTCGGAGAGAAAGAATGCGTAAGCCG-GTGATCGACCCGATCCCCCCCTGCGTGCTGTCGAT
66 CCAATCGGAGAGGCAGAATGCGTAAGCCGAG-GATCGACCCGATCCCCCACTGCGTGCTGTCGGT
* * * * *
13869500 CCTACTGCCACAACCCTCAGTCCGGTCCGA
130 CCCACTGCCACAACCCTCGGTCCGCT-AGG
** * * * * * * * *
13869530 TATTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGCCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * ** * **
13869594 GCCAACCGGAGAGGCATAATGCG-AAGCCGAGGATCGGTCCGATCCCCCACTGCGTACAATCGGT
65 GCCAATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCACTGCGTGCTGTCGGT
*
13869658 CCCGCTGCCACAACCCTCGGTCCGACTAGG
130 CCCACTGCCACAACCCTCGGTCCG-CTAGG
* *
13869688 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATTG-GCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCAGGCGCTCA
* * * * * *
13869752 GCCAATCAGAGAGGCAGAATGCGTAAACCGGGGATCGGCCCAAT-CCCCGCTGCGTGCT
65 GCCAATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCACTGCGTGCT
13869810 ACCAATCCTA
Statistics
Matches: 466, Mismatches: 119, Indels: 26
0.76 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 230 0.49
159 232 0.50
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
CCAATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCACTGCGTGCTGTCGGTC
CCACTGCCACAACCCTCGGTCCGCTAGG
Found at i:13869851 original size:158 final size:160
Alignment explanation
Indices: 13869055--13869875 Score: 584
Period size: 158 Copynumber: 5.2 Consensus size: 160
13869045 ACTTCGTATG
* * * * *
13869055 CTTAGACAT-GGAATGAACTCTGTTTGCCTAAGCCAACCCATGAAATGAGCCTGCAGGCACTCAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * *** * ** * * * * * * *
13869119 CCGACCGGAGAGGCAGAATGTACAAGTCGATGATTGGTCTGGTCCCCTA-TACGTGCTGTCGATC
66 CCAATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTATCGATC
* * ** *
13869183 CTACTACTACAACCCTTGGTCCAG-TCTGAT
131 CTACTGCCACAACCCTCAGTCCGGTTC-GAT
* * * * ** *
13869213 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGTGGGCGCTGAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
** * * * ** * ** * ** *
13869277 CCGGTCGGAGAGGCATAATGCGCAAGTCAAGGATCGACCCGATCCCCTTCTGTGTGCTGCCGGTC
66 CCAATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTATCGATC
* ** * * * **
13869342 CCACTGCTGCAACCCTC-GATTCGGCTAGGG
131 CTACTGCCACAACCCTCAG-TCCGGTTCGAT
* ** *
13869372 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGATCGTGTGGGCCCTCAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* ** ** * * * *
13869436 TCGGTCGGAGAGAAAGAATGCGTAAGCCGGTGATCGACCCGATCCCCCCCTGCGTGCTGTCGATC
66 CCAATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTATCGATC
*
13869501 CTACTGCCACAACCCTCAGTCCGGTCCGAT
131 CTACTGCCACAACCCTCAGTCCGGTTCGAT
* * * * * * * * *
13869531 ATTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGCCGTTGAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * * * * * *
13869595 CCAACCGGAGAGGCATAATGCG-AAGCCGAGGATCGGTCCGATCCCCCACTGCGTACAATCGGTC
66 CCAATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTATCGATC
** * ** * **
13869659 CCGCTGCCACAACCCTCGGTCCGACTAGGG
131 CTACTGCCACAACCCTCAGTCCGGTTCGAT
* *
13869689 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATTG-GCGTGCAGGCGCTCA
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCAGGCGCTCA
* * * * * *
13869752 GCCAATCAGAGAGGCAGAATGCGTAAACCGGGGATCGGCCCAAT-CCCCGCTGCGTGCTACCAAT
65 GCCAATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTATCGAT
* * *
13869816 CCTACTGTCGCAACCCTCAGTCTGGTTCGAT
130 CCTACTGCCACAACCCTCAGTCCGGTTCGAT
* *
13869847 CTTAGACCTGGGAAATGAACTCTGTATGC
1 CTTAGACATGGG-AATGAACTCCGTATGC
13869876 TTAGATGGGG
Statistics
Matches: 510, Mismatches: 141, Indels: 22
0.76 0.21 0.03
Matches are distributed among these distances:
157 1 0.00
158 255 0.50
159 237 0.46
160 17 0.03
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (160 bp):
CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
CCAATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTATCGATC
CTACTGCCACAACCCTCAGTCCGGTTCGAT
Found at i:13870593 original size:26 final size:26
Alignment explanation
Indices: 13870555--13870607 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13870545 GGCTCAAAAT
13870555 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13870581 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13870607 C
1 C
13870608 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13870952 original size:159 final size:153
Alignment explanation
Indices: 13870580--13871075 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 153
13870570 AACTCCGTAT
* *
13870580 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * *
13870645 TTGATCGGAGAGGTAGAATGCATAAGCCGAGGATCGGCCTAGTCCCTCCTGTGTGCTATCGATCT
65 CCGATC-GAGAGGCAGAATGCACAAGCCGAGGATCGCCCGA-TCCC-CCTGCGTGCTATCGATCC
* * * * *
13870710 TGCTGTTGCAACCCATGGTCC-GTTCCGA
127 TACTGTCGCAACCC-TCGACCTG-GCCGA
* * **
13870738 TCTTAGACTAGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
13870803 CCGATCGAAGAGGCATAATGCACAGGCCGAGGATCGACCCGATCCCCCTTTGCGTGCTGTCGGTC
65 CCGATCG-AGAGGCAGAATGCACAAGCCGAGGATCG-CCCGATCCCCC--TGCGTGCTATCGATC
* * * *
13870868 CCACTGCCACAACCCTCGACCTGGCTGA
126 CTACTGTCGCAACCCTCGACCTGGCCGA
* *
13870896 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
1 -GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
13870961 GTCGGATAGAGAGGCAGAATGCCCAAGCC-AGGGATCGGCTCGGTCCCCCCTGCGTGCTATCGAT
64 G-CCGATCGAGAGGCAGAATGCACAAGCCGA-GGATC-GCCCGAT-CCCCCTGCGTGCTATCGAT
*
13871025 CCTACTGTCGCAACCCTCGATCTGGACCGA
125 CCTACTGTCGCAACCCTCGACCTGG-CCGA
*
13871055 TCTTAGACTGCGAATGAACTC
1 GCTTAGACTG-GAATGAACTC
13871076 TATATGCTTA
Statistics
Matches: 276, Mismatches: 48, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
157 6 0.02
158 147 0.53
159 111 0.40
160 12 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (153 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGAGAGGCAGAATGCACAAGCCGAGGATCGCCCGATCCCCCTGCGTGCTATCGATCCTACT
GTCGCAACCCTCGACCTGGCCGA
Found at i:13871097 original size:26 final size:26
Alignment explanation
Indices: 13871056--13871108 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13871046 CTGGACCGAT
13871056 CTTAGACTGCGAATGAACTCTATATG
1 CTTAGACTGCGAATGAACTCTATATG
* *
13871082 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGCGAATGAACTCTATATG
13871108 C
1 C
13871109 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCTATATG
Found at i:13871706 original size:356 final size:361
Alignment explanation
Indices: 13870858--13871732 Score: 966
Period size: 356 Copynumber: 2.4 Consensus size: 361
13870848 CCCTTTGCGT
** * * *
13870858 GCTGTCGGTCCCACTGCCACAACCCTC-GACCTGGCTGAGGCTTAGACATGGAATGAACTCCCTA
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCC-GGCTGGGGCTTAGACATGGAATGAACTCCGTA
* ** *
13870922 TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTC-AGTCGGATAGAGAGGCAGAATGCCCA
65 TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAACT-GGCCAGAGAGGCAGAATGCGCA
* * * * *
13870986 AGCCAGGGATCGGCTCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCTGGA
129 AGCCAGGGATCGGCCCGAT--CCCCTGCCTGCTATCG-----ACTGTCACAACCCTCGATCTCGA
* *
13871051 CCGATCTTAGACTGCGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTATATGCCTAAGTC
187 CCGATCTTAGACTGCGAATGAACTCTATATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTC
* * ** ** * * **
13871116 AACCCATAAAACGAGCGTGCAGACACTCAGCCAGTTGGAGAGGTCGACCGGCGAGGCATAATGTG
252 AACCCACAAAACGAGCGTACAGACACTCAGCCAGCCGGAGAGACCGACCGGAGAGACATAATGCA
* * *
13871181 CAAGCCGGGGATCAGCCCAGTCCCCCTCTATGTGCTGCCGATCCC
317 AAAGCCGGGGATCAGCCCAGTCACCCTCTACGTGCTGCCGATCCC
* ** * *
13871226 GCCGTCAATCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGATATGGAATGAAC-CCTGTA
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCC-GTA
* * * * * *
13871290 TGCCTAAGCCTACCCACGAAACGAGCGTACGGGCGCTCAGCCGACC-GAAGAGGCAGAATGCGCA
65 TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAACTGGCCAG-AGAGGCAGAATGCGCA
* * *
13871354 AGCCTGAGATCGGCCCGAT-CCCT-CCTGC-AT-G-CTGTCACAACCCTCGGTC-CGATCCGATC
129 AGCCAGGGATCGGCCCGATCCCCTGCCTGCTATCGACTGTCACAACCCTCGATCTCGA-CCGATC
*
13871413 TTAGACTG-GAAATGAACT-TCATATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACC
193 TTAGACTGCG-AATGAACTCT-ATATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTCAACC
* * * * *
13871476 CACGAAACGAGCGTACAGGCGCTCAG-CTGACCGGAGAGACCGATCGGAGAGACATAATGCAAAA
256 CACAAAACGAGCGTACAGACACTCAGCCAG-CCGGAGAGACCGACCGGAGAGACATAATGCAAAA
* * *
13871540 GCCGGGGATCAGCCCGGTCACCCTCTGCGTGCTGTCGATCCC
320 GCCGGGGATCAGCCCAGTCACCCTCTACGTGCTGCCGATCCC
13871582 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* ** * * * *
13871647 GCCCAAGCCAACCCATAAAAAGAATGTGCGGGTGCTCAACTGGCCAGAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAACTGGCCAGAGAGGCAGAATGCGCAAG
* * *
13871712 CCGGGGATCGGCTCGGTCCCC
131 CCAGGGATCGGCCCGATCCCC
13871733 CCTTGCATAC
Statistics
Matches: 422, Mismatches: 74, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
355 6 0.01
356 280 0.66
357 6 0.01
362 1 0.00
363 2 0.00
364 4 0.01
365 4 0.01
367 3 0.01
368 113 0.27
369 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (361 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAACTGGCCAGAGAGGCAGAATGCGCAAG
CCAGGGATCGGCCCGATCCCCTGCCTGCTATCGACTGTCACAACCCTCGATCTCGACCGATCTTA
GACTGCGAATGAACTCTATATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTCAACCCACAA
AACGAGCGTACAGACACTCAGCCAGCCGGAGAGACCGACCGGAGAGACATAATGCAAAAGCCGGG
GATCAGCCCAGTCACCCTCTACGTGCTGCCGATCCC
Found at i:13871831 original size:26 final size:26
Alignment explanation
Indices: 13871793--13871845 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13871783 TTGATTCGAT
13871793 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13871819 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13871845 C
1 C
13871846 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13872209 original size:158 final size:157
Alignment explanation
Indices: 13871819--13872211 Score: 466
Period size: 158 Copynumber: 2.5 Consensus size: 157
13871809 ACTCCGTATG
* * *
13871819 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
1 CTTAGAC-TGAGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
13871883 CCGATCGAAGAGGTAAATGTGCAAGCGAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
65 CCGACCGGAGAGGTAAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCAGTCGATCCT
* * *
13871948 GCTACCACAACCCTCAGTCTGATCCGAT
130 ACTACCACAACCCTCAGTCCGATCCAAT
* * * * *
13871976 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAACGTGTGTGTGGGTGCTCAA
1 CTTAGACTGAGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
**
13872040 CCGACTAGAGAGGTAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCAGTCGATCC
65 CCGACCGGAGAGGTA-AATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCAGTCGATCC
* * * * *
13872105 TACTATCGCAACCCTCGGTCCGGTCTAAT
129 TACTACCACAACCCTCAGTCCGATCCAAT
* * * * * *
13872134 CTTAGATTGAGAATGAACTCTGTATGCCTAAGTCAACCCATGCAAGGAGCGTCCGGGCGCTCAAT
1 CTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
*
13872199 CTACCGGAGAGGT
66 CGACCGGAGAGGT
13872212 CAGTCGGAGA
Statistics
Matches: 195, Mismatches: 37, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
156 2 0.01
157 64 0.33
158 128 0.66
159 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGTAAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCAGTCGATCCTA
CTACCACAACCCTCAGTCCGATCCAAT
Found at i:13872515 original size:26 final size:26
Alignment explanation
Indices: 13872477--13872529 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13872467 CCGATCCGAT
13872477 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13872503 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13872529 C
1 C
13872530 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13872737 original size:196 final size:196
Alignment explanation
Indices: 13872305--13872831 Score: 609
Period size: 196 Copynumber: 2.7 Consensus size: 196
13872295 TCCGGTTGGG
* *
13872305 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCTTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGCACTCAG
* * * * * *
13872370 CCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCCTGCATGCTACCGATC
66 CCAGCCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCCTGCATCCTACCGATC
* * *
13872435 TTACTGCTGGTCTTGCTACCGTAATACTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCAT
131 CTACTGCTAGTCTTGCTACCG-AACACTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCAT
13872500 AT
195 AT
* *
13872502 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGCACTCAG
* * * ** **
13872567 CCAACCGGAGAGGTAGAATGCGA-AAGCCAGGGATCGGTCCGGT-CCCCCCTGTGTCCTGTCGAT
66 CCAGCCGGAGAGGTAGAATGC-ACAAGCCAGGGATCGGCCCGATCCCCCCCTGCATCCTACCGAT
* * * * *
13872630 CCTGCTGCTAGTTTTGCTGTTCC-AACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTC
130 CCTACTGCTAGTCTTGC--TACCGAACACTCGATCCGA-TCCGATCTTAGACTGGGAATGAACTC
13872693 CATAT
192 CATAT
* * * **
13872698 GCTTAGACATGGAATGAACCCCGTCTGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGCACTCAG
* * * * * **
13872763 CCAGTCGGAGAGGTAGAAAGCACAAG-CTGAGCATCGGCCC-AGT-CCCCCCTGCATGCTGTCGA
66 CCAGCCGGAGAGGTAGAATGCACAAGCCAG-GGATCGGCCCGA-TCCCCCCCTGCATCCTACCGA
13872825 TCCTACT
129 TCCTACT
13872832 ACCATAACCC
Statistics
Matches: 281, Mismatches: 42, Indels: 15
0.83 0.12 0.04
Matches are distributed among these distances:
195 4 0.01
196 179 0.64
197 94 0.33
198 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGCACTCAG
CCAGCCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCCTGCATCCTACCGATC
CTACTGCTAGTCTTGCTACCGAACACTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATA
T
Found at i:13873990 original size:158 final size:158
Alignment explanation
Indices: 13873504--13873989 Score: 487
Period size: 159 Copynumber: 3.1 Consensus size: 158
13873494 GCTTAAATGT
* * *
13873504 GGAATGAACTCTGTATGCCTAAGCCAACCCATG-AACGAGCGTGCAGGCGCTCAGCTGGCCGGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * *
13873568 AGGTAGAATGTGCAAGTCGAGGACCGGCCCGATCACCCCCTGCATGCTGTCAATCCTGCTGCCAC
66 AGGCAGAATGTGCAAGCCGGGGATCGGCCCGATC-CCCCTTGCGTGCTGTCGATCCTGCTGCCAC
* *
13873633 AACCCTCGATCCGATCCGATCTTAGAGTG
130 AACCCTCGGTCCGATCCGATCTTAGACTG
* * * * * * * *
13873662 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGATCGTGTGGGCGTTGAGCCAACCGGTG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * *
13873727 AGGCATAATGCGCAAGCTC-GGGATCGGCTCGATCCCCCTCTGCGTGCTGTTGATCCCGCTGCCA
66 AGGCAGAATGTGCAAGC-CGGGGATCGGCCCGATCCCCCT-TGCGTGCTGTCGATCCTGCTGCCA
* * * * ** *
13873791 TAACCCTTGGCCCGGTTGGGGT-TTAGACAT-
129 CAACCCTCGGTCC-GATCCGATCTTAGAC-TG
* * ***
13873821 GGAATGAACTCCT-TATGCCTAAGCCATCCCACGAAACGAGCGTGCGGGCGCTCAGCCGACTAAA
1 GGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGA
* * ** * * *
13873885 GAGGCAGAATGTGCAAGCCGGGGATTGACCCGATCTTCCTTACGTGCTGTCGATTCTACTGCCAC
65 GAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCAC
13873950 AACCCTCGGTCCGATCCGATCTTAGACTG
130 AACCCTCGGTCCGATCCGATCTTAGACTG
13873979 GGAATGAACTC
1 GGAATGAACTC
13873990 CGAATGCTTA
Statistics
Matches: 255, Mismatches: 64, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 82 0.32
159 159 0.62
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCACA
ACCCTCGGTCCGATCCGATCTTAGACTG
Found at i:13874717 original size:26 final size:26
Alignment explanation
Indices: 13874688--13874740 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13874678 GGCTCAAAAT
* *
13874688 CTTAGAC-TGTGAATGAACTTCGTATG
1 CTTAGACATG-GAATAAACTCCGTATG
13874714 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
13874740 C
1 C
13874741 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:13874923 original size:26 final size:26
Alignment explanation
Indices: 13874872--13874924 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13874862 CTGGTCTGAT
* *
13874872 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13874898 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13874924 C
1 C
13874925 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13876078 original size:26 final size:26
Alignment explanation
Indices: 13876030--13876082 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13876020 GTTGACTTAG
*
13876030 GCATACAGAGTTCATCCGTAGTCTAA
1 GCATACAGAGTTCATCCGCAGTCTAA
*
13876056 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCA-TCCGCAGTCTAA
13876082 G
1 G
13876083 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCGCAGTCTAA
Found at i:13876557 original size:157 final size:157
Alignment explanation
Indices: 13876056--13876550 Score: 451
Period size: 160 Copynumber: 3.1 Consensus size: 157
13876046 CGTAGTCTAA
* * *
13876056 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGCGGCACGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCA-GTAGGATCGA
* * ** * *
13876120 TAGCACGCAGAGAGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGTCGGCTGAGCG
64 TAGCACGCAGGGGGGACCGGG-CCATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* ** *
13876185 CCTGCACGCCCGTTTCATGGGTTTGGCTTAG
128 CCCGCACGCTAGTTTCGTGGG-TTGGCTTAG
* * ** *
13876216 GCATAGGGAGTCCATT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGT-GCGATGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGTAG-GAT--
* * * * * * ** * *
13876278 CG-TTGCACGCAGAGGGGGACCGGGCCGATCCCCGACTAGCGCATTATGCCTATCCGACCGACTC
61 CGATAGCACGCAG-GGGGGACCGGGCC-ATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTG
** * *
13876342 AGCGCCCATACGCTAATTTCGTGGGTTGACTTAG
124 AGCGCCCGCACGCTAGTTTCGTGGGTTGGCTTAG
* * * *
13876376 GCATAAGAATTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTTGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGTAGGATCGATA
* * * *
13876441 GCACACAGGGGGGACCGAGCCATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGTGCCC
66 GCACGCAGGGGGGACCGGGCCATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
* * ** *
13876506 GCACACTTGTTTCGTATGTTGGCTTAT
131 GCACGCTAGTTTCGTGGGTTGGCTTAG
13876533 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13876551 ATGTCTACGC
Statistics
Matches: 257, Mismatches: 66, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
157 66 0.26
158 15 0.06
159 18 0.07
160 97 0.38
161 60 0.23
162 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGTAGGATCGATA
GCACGCAGGGGGGACCGGGCCATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
GCACGCTAGTTTCGTGGGTTGGCTTAG
Found at i:13877942 original size:26 final size:24
Alignment explanation
Indices: 13877913--13877963 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
13877903 GCTGGCTTAG
13877913 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTT-TTCCA-GTCTAA
*
13877939 GCATATGGAGTTTTTCCAGTCTAA
1 GCATACGGAGTTTTTCCAGTCTAA
13877963 G
1 G
13877964 TTTGAGCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
25 5 0.21
26 12 0.50
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (24 bp):
GCATACGGAGTTTTTCCAGTCTAA
Found at i:13878989 original size:158 final size:158
Alignment explanation
Indices: 13878637--13879120 Score: 526
Period size: 158 Copynumber: 3.1 Consensus size: 158
13878627 AAGCATACAA
* * * *
13878637 AGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTGTGGCTGTAGGATCGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAG
* * * * *
13878702 AGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCTCGCGCGC-
66 AGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCT
* *
13878766 CTGTTTCATGGGTTGGCTTAGGCAGAGGG
131 C-GTTTCATGGGTTGGCTTAGGCATACGG
* ** * * ** * *
13878795 AGTTCATT-CCATGTGTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGT
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGC
* * * * * * * * * * *
13878858 AGAAGGGACCGGGCCGATCCCCAACTTGCGTATTATGCCTCTTCGGTCGGCTTAACACCCGTACG
64 AGAGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
* *
13878923 CTCGTTTCATGGGTTGACTTATGCATACGG
129 CTCGTTTCATGGGTTGGCTTAGGCATACGG
** * * * *
13878953 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATTGACAGCATGCA-
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAG
*
13879017 AGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGC
66 A-GGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC
**
13879082 TCGTTTTGTGGGTTGGCTTAGGCATACGG
130 TCGTTTCATGGGTTGGCTTAGGCATACGG
13879111 AGTTCATTCC
1 AGTTCATTCC
13879121 ATGGCTAAGC
Statistics
Matches: 256, Mismatches: 64, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 7 0.03
158 243 0.95
159 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAG
AGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGG
Found at i:13879158 original size:26 final size:26
Alignment explanation
Indices: 13879103--13879207 Score: 99
Period size: 26 Copynumber: 4.0 Consensus size: 26
13879093 GTTGGCTTAG
*
13879103 GCATACGGAGTTCATT-CCATGGCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* **
13879129 GCATATGGAGTTCATTCCCAGTCTCG
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
13879155 GCATACGAACTTC-TTCAGCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
13879181 GCATATC-GAGTTCATTCCCAGTCTAA
1 GCATA-CGGAGTTCATTCCCAGTCTAA
13879207 G
1 G
13879208 ATCAGACCGG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
25 3 0.05
26 52 0.84
27 7 0.11
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13879645 original size:158 final size:157
Alignment explanation
Indices: 13879181--13879999 Score: 632
Period size: 158 Copynumber: 5.2 Consensus size: 157
13879171 AGCAGTCTAA
* *
13879181 GCATATCG-AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGCAGGATC-AG
1 GCATA-CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGA-
* * * * * * * *
13879244 CAGTACGCAGGGGGAACCAGGCCGATCTTCGGCTTGCACATTCTACCTCTCTGGCCGGTTGAGTG
64 CAGCACGTAGGGGGGACC-GGGCTATCCTCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTG
* *
13879309 CCCGCACGCTCGTTTCGTGTGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * *
13879339 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGGACCGAGGGTTGTGACAGCGGGA-CTG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGATAGCAGGATC-G
* * * * * *
13879401 GCAGCACGTAGAGGGGGACCGGGCTGATCCTTGGCTTG-AGCATTATGCCTCT-TCGGTCGGGTC
63 ACAGCACGTAG-GGGGGACCGGGCT-ATCCTCGGCTTGCA-CATTCTGCCTCTCT-GGCCGGCTG
* *
13879464 AGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAT
124 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** *
13879498 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGCATCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
* * * * *
13879563 GCACGCAGGGGGGACCGGGCATATCCCCGACTTGCTCATTCTGCCTCTCTGACCGGCTGAGTGCC
66 GCACGTAGGGGGGACCGGGC-TATCCTCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTGCC
* *
13879628 TGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * *
13879656 GCATACGGAGTTCATT-CCATGTCTAGGCCCCA-ACCGGACCGAGGGTTACGGTAGCGGGACCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGA
* * * * ** * * * * * *
13879719 TAGCACGTAGAGGGGTACCGGGCCGATCCTCGACTTGTGCATTATGCCTCTCCGGTCGACTTAGC
64 CAGCACGTAG-GGGGGACCGGG-CTATCCTCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGT
* * * * *
13879784 ACCCGCACACTCGTTTTGTAGGTTGAGTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
13879815 GCATACGAAGATCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
* * * * * * * **
13879880 GAACGTAGGGGGGACTGGGCTGGTCCCCGGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGCGAT
66 GCACGTAGGGGGGACCGGGCT-ATCCTCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTGCC
* ** * *
13879945 CGCACGCCCGTTTCGCCGATTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
13879973 GCTTAGGGAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
13880000 CCCCAGCCAG
Statistics
Matches: 512, Mismatches: 126, Indels: 46
0.75 0.18 0.07
Matches are distributed among these distances:
157 12 0.02
158 254 0.50
159 238 0.46
160 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
GCACGTAGGGGGGACCGGGCTATCCTCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13879660 original size:553 final size:552
Alignment explanation
Indices: 13878621--13879676 Score: 1415
Period size: 553 Copynumber: 1.9 Consensus size: 552
13878611 AGTTCATCCC
* * ** * *
13878621 CAGTCTAAGCATACAAAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTGTGGCTGTAG
1 CAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGACGATGCAG
* ** *
13878686 GATCGGCAGCACGCAGAGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGC
66 GATCAGCAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACCGGC
* * *
13878751 TGAGCGCTCGCGCGCCTGTTTCATGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTGTAAGCC
131 TGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCC
* *
13878816 CCAGCTGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAAGGGACCGGGCCGATCCCCA
196 CCAGCTGGACCGAGGGTTGTGACAGCGGGACCGGCAGCACGTAGAAGGGACCGGGCCGATCCCCA
* * * *
13878881 ACTTGCGTATTATGCCTCTTCGGTCGGCTTAACACCCGTACGCTCGTTTCATGGGTTGACTTATG
261 ACTTGAGCATTATGCCTCTTCGGTCGGCTCAACACCCGCACGCTCGTTTCATGGGTTGACTTATG
* * *
13878946 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATTGACAG
326 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGACAGTAGGATCGACAG
* * * *
13879011 CATGCAAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCC
391 CACGCAAGGGGGACCGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCC
*
13879076 GCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTAAGCATATGGAGTT
456 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTAAGCATATGGAGTT
13879141 CATTCCCAGTCTCGGCATACGAACTTCTTCAG
521 CATTCCCAGTCTCGGCATACGAACTTCTTCAG
* * *
13879173 CAGTCTAAGCATATC-GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT-ACGATAGC
1 CAGTCTAAGCATA-CAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGACGAT-GC
* ** * *
13879236 AGGATCAGCAGTACGCAG-GGGGAACCAGGCCGATCTTCGGCTTGCACATTCTACCTCTCTGGCC
64 AGGATCAGCAGCACGCAGAGGGG-ACCAGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACC
* * * * *
13879300 GGTTGAGTGCCCGCACG-CTCGTTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
128 GGCTGAGCGCCCGCACGCCT-GTTTCATGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTA
* * * *
13879364 AGCCCCA-ATCGGACCGAGGGTTGTGACAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCTGA
192 AGCCCCAGCT-GGACCGAGGGTTGTGACAGCGGGACCGGCAGCACGTAGA-AGGGACCGGGCCGA
**** * *** * *
13879428 TCCTTGGCTTGAGCATTATGCCTCTTCGGTCGGGTCAGTGCCCGCATGCTCGTTTCGTGGGTTGA
255 TCCCCAACTTGAGCATTATGCCTCTTCGGTCGGCTCAACACCCGCACGCTCGTTTCATGGGTTGA
* * *
13879493 CTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGCA-TCAGGA
320 CTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGACAGT-AGGA
* * * * *
13879557 TCGACAGCACGCAGGGGGGACCGGGCATATCCCC-GACTTGCTCATTCTGCCTCTCTGACCGGCT
384 TCGACAGCACGCAAGGGGGACCGGGCAGATCCCCAG-CTTGCGCATTCTGCCTCTCCGACCGACT
* *
13879621 GAGTGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
448 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
13879677 TCTAGGCCCC
Statistics
Matches: 432, Mismatches: 64, Indels: 15
0.85 0.13 0.03
Matches are distributed among these distances:
551 9 0.02
552 197 0.46
553 226 0.52
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (552 bp):
CAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGACGATGCAG
GATCAGCAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACCGGC
TGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCC
CCAGCTGGACCGAGGGTTGTGACAGCGGGACCGGCAGCACGTAGAAGGGACCGGGCCGATCCCCA
ACTTGAGCATTATGCCTCTTCGGTCGGCTCAACACCCGCACGCTCGTTTCATGGGTTGACTTATG
CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGACAGTAGGATCGACAG
CACGCAAGGGGGACCGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTAAGCATATGGAGTT
CATTCCCAGTCTCGGCATACGAACTTCTTCAG
Found at i:13880034 original size:317 final size:315
Alignment explanation
Indices: 13879192--13880040 Score: 1018
Period size: 317 Copynumber: 2.7 Consensus size: 315
13879182 CATATCGAGT
* *
13879192 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGCAGGATC-AGCAGTACGCAGGG
1 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGA-CAGAACGCAGGG
* * * ** * *
13879256 GGAACCAGGCCGATCTTCGGCTTGCACATTCTACCTCTCTGGCCGGTTGAGTGCCCGCACGCTCG
65 GGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTG-CCGCACGCTCG
* *
13879321 TTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTT
129 TTTCGCG-GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
* * * * * *
13879386 GTGACAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCTGATCCTTGGCTTGAGCATTATGCCT
193 GTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCGGGCCGATCCTCGACTTGAGCATTATGCCT
* ** ** ** * * *
13879451 CTTCGGTCGGGTCAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTATGCATACGAAGT
258 CTCCGGTCGACTCAGCACCCGCACACTCGTTTCGTAGGTTGACTTAGGCATACGAAGA
* ** * *
13879509 TCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGCATCAGGATCGACAGCACGCAGGGG
1 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGACAGAACGCAGGGG
* * *
13879574 GGACCGGGCAT-ATCCCCGACTTGCTCATTCTGCCTCTCTGACCGGCTGAGTGCCTGCACGCTCG
66 GGACCGGGC-TGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTGCC-GCACGCTCG
* * *
13879638 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCCCCAACCGGACCGAGGGTT
129 TTTCG-CGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
** * * * *
13879703 ACGGTAGCGGGACCGATAGCACGTAGAGGGGTACCGGGCCGATCCTCGACTTGTGCATTATGCCT
193 GTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCGGGCCGATCCTCGACTTGAGCATTATGCCT
* * *
13879768 CTCCGGTCGACTTAGCACCCGCACACTCGTTTTGTAGGTTGAGTTAGGCATACGAAGA
258 CTCCGGTCGACTCAGCACCCGCACACTCGTTTCGTAGGTTGACTTAGGCATACGAAGA
* * * * * *
13879826 TCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGATCGATAGAACGTAGGGG
1 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGACAGAACGCAGGGG
* * * * * * *
13879891 GGACTGGGCTGGTCCCCGGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGCGATCGCACGCCCGT
66 GGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTG-CCGCACGCTCGT
* * * * *
13879956 TTCGCCGATTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTG
130 TTCG-CGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTG
*
13880021 TGGCAGTGGGACCGGTAGCA
194 TGGCAGCGGGACCGGTAGCA
13880041 TGCAGAGTGG
Statistics
Matches: 446, Mismatches: 80, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
316 3 0.01
317 440 0.99
318 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (315 bp):
TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGACAGAACGCAGGGG
GGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGTGCCGCACGCTCGTT
TCGCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTG
GCAGCGGGACCGGTAGCACGTAGAGGGGGACCGGGCCGATCCTCGACTTGAGCATTATGCCTCTC
CGGTCGACTCAGCACCCGCACACTCGTTTCGTAGGTTGACTTAGGCATACGAAGA
Found at i:13880166 original size:26 final size:26
Alignment explanation
Indices: 13880130--13880184 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
13880120 GTCTAGGATC
*
13880130 GGACCAGACCGTGGGTTGCGGTAGCA
1 GGACCAGACCGTGGGTTGCGATAGCA
13880156 GGACCAGACCGTGGGTTGCGATAGCA
1 GGACCAGACCGTGGGTTGCGATAGCA
13880182 GGA
1 GGA
13880185 TCGATAGCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.42, T:0.15
Consensus pattern (26 bp):
GGACCAGACCGTGGGTTGCGATAGCA
Found at i:13880505 original size:26 final size:26
Alignment explanation
Indices: 13880469--13880521 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13880459 GTTGACTTAG
* *
13880469 GCATATGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13880495 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13880521 G
1 G
13880522 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13880986 original size:26 final size:26
Alignment explanation
Indices: 13880950--13881002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13880940 GTTGACTTAG
*
13880950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13880976 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13881002 G
1 G
13881003 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13882687 original size:185 final size:184
Alignment explanation
Indices: 13882437--13882872 Score: 477
Period size: 185 Copynumber: 2.4 Consensus size: 184
13882427 CCTTTTCGGC
* * * * *
13882437 CGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATCCCTAGTCTA
1 CGGCTGAGCTCCCTCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTA
* ** * * * *
13882502 AGCTTACAGAGTTCATTCTTAGTCTAAGATTAGA-CTGGATCGAGGGTTAC-AGCAGTAGGATAG
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTACGA-CAGCAAGATAG
** ** * * * *
13882565 ACAGCACGCCGGGGGGGACCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCTGGT
129 ACAGCACG-AAGGGGGGACCGGACCAATCCTCGGCTTGCACATTCTACCTCTCCGAT
* *
13882622 CGGCTGAGCTCCCTCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTA
1 CGGCTGAGCTCCCTCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTA
** * *
13882687 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGATCGAC
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAAGATAGAC
* * **
13882752 AGCACGAAGGGGGGACTGGACCAATCCTTGGCTTGTGCATTCTACCTCTCCGAT
131 AGCACGAAGGGGGGACCGGACCAATCCTCGGCTTGCACATTCTACCTCTCCGAT
* * * * *
13882806 CGGCTGAG-TGCCCGT-AC-CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
1 CGGCTGAGCT-CCC-TCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTC
13882868 TAAGC
64 TAAGC
13882873 CCGAACCAGA
Statistics
Matches: 210, Mismatches: 37, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
183 44 0.21
184 49 0.23
185 115 0.55
186 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
CGGCTGAGCTCCCTCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAAGATAGAC
AGCACGAAGGGGGGACCGGACCAATCCTCGGCTTGCACATTCTACCTCTCCGAT
Found at i:13882692 original size:26 final size:26
Alignment explanation
Indices: 13882662--13882714 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13882652 GTTGACTTAG
13882662 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
13882688 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13882714 G
1 G
13882715 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13883037 original size:26 final size:26
Alignment explanation
Indices: 13883007--13883056 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13882997 GACTTAGGCA
13883007 TACGGAGTTCA-TCCCTAGTCTAAGCT
1 TACGGAGTTCATTCCC-AGTCTAAGCT
13883033 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13883057 ATTAGACTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:13883055 original size:527 final size:527
Alignment explanation
Indices: 13882060--13883213 Score: 1571
Period size: 527 Copynumber: 2.2 Consensus size: 527
13882050 TACCACCTGT
* * * * *
13882060 TCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTTGGCTGAGCGCCCGCACGCTCATTTCGTGGG
1 TCGATCCTCGGCTTGCACATTCTGCCTCTCTGGTCGGCTGAGCTCCCGCACGCTCGTTTCGTGGG
* *
13882125 TTGACTTAGGCATATGGAGTTCATCCCTAGTCTAACCATACAGAGTTCATTCCCAATCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATCCCAAGTCTAACCATACAGAGTTCATTCCCAATCTAAGATC
* * * * * **
13882190 GGATCAGACCGAGGGCTGCGACAGTAGGATCGGCAACACGTAGGGGGGATCGGGTCAATCCTCGG
131 AGATCAGACCGAGGGCTGCGACAGCAAGATCGACAACACGAAGGGGGGATCGGACCAATCCTCGG
* * * * *
13882255 CTTGCGCTTTTTGCCTCTCCGGGCGGCTGAGTGCCCGCACGCCCCTTTCGTGGGTTGGCTTAGGC
196 CTTGCGCATTCTACCTCTCCGAGCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
* * *
13882320 ATAGGGAGTTCCTTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGGGACCGGTAGC
261 ATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGCTGTGGCAGCGGGACCGGCAGC
* * *
13882385 ACACAGAGGGGGACTGGGCCGATCCCCTACTTGCGCATTATGCCTTTTCGGCCGGCTCAGCACCC
326 ACACAGAGAGGGACTGGGCCGATCCCCTACTTACGCATTATGCCTTTTCGGCCGGCTCAACACCC
* *
13882450 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATCCCTAGTCTAAGCTTACAGAGTT
391 GAACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATCCCTAGTCTAAGCTTACAGAGTT
** * * * *
13882515 CATTCTTAGTCTAAGATTAGACTGGATCGAGGGTTACAGCAGTAGGATAGACAGCACGCCGGGGG
456 CATTCCCAGTCTAAGATTAGACTAGACCGAGGGTTACAGCAGTAGGATAGACAGCAC-ACAGGGG
*
13882580 GGACCGGG
520 GGACCAGG
* *
13882588 TCGATCCTCGGCTTGCACATTCTGCCTCTCTGGTCGGCTGAGCTCCCTCACGCTCGTTTCATGGG
1 TCGATCCTCGGCTTGCACATTCTGCCTCTCTGGTCGGCTGAGCTCCCGCACGCTCGTTTCGTGGG
* ** *
13882653 TTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATCCCAAGTCTAACCATACAGAGTTCATTCCCAATCTAAGATC
* * * *
13882718 AGATCGGACCGAGGGTTGCGACAGCAAGATCGACAGCACGAAGGGGGGA-CTGGACCAATCCTTG
131 AGATCAGACCGAGGGCTGCGACAGCAAGATCGACAACACGAAGGGGGGATC-GGACCAATCCTCG
* * *
13882782 GCTTGTGCATTCTACCTCTCCGATCGGCTGAGTGCCCGTAC-CCCATTTCGTGGGTTGGCTTAGG
195 GCTTGCGCATTCTACCTCTCCGAGCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGG
* *
13882846 CATAGGGAGTTCATTCCATGTCTAAGCCCGAACCAGACCGAGGGCTGTGGCAGCGGGACCGGCAG
260 CATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGCTGTGGCAGCGGGACCGGCAG
** * * * **
13882911 CATGCAGAGAGGGACTGGGCCGAT-CCCTGGCTTACGCATTATGCTTTTTTGGCCGGCTCAATGC
325 CACACAGAGAGGGACTGGGCCGATCCCCT-ACTTACGCATTATGCCTTTTCGGCCGGCTCAACAC
* * *
13882975 CCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCTTACGGAG
389 CCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATCCCTAGTCTAAGCTTACAGAG
* * *
13883040 TTCATTCCCAGTCTAAGATTAGACTAGACCGAGGGTTGCAGCAGTAGGATCGACAGCACATAGGG
454 TTCATTCCCAGTCTAAGATTAGACTAGACCGAGGGTTACAGCAGTAGGATAGACAGCACACAGGG
13883105 GGGACCAGG
519 GGGACCAGG
* * * * * * * *
13883114 TCGATCCTCAGCTTGCACATTCTACCTCT-TCGGCCGGTTGAG-TGCTCGCATGTTCGTTTTGTG
1 TCGATCCTCGGCTTGCACATTCTGCCTCTCT-GGTCGGCTGAGCT-CCCGCACGCTCGTTTCGTG
* * *
13883177 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
64 GGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAA
13883214 ACCCCAACTG
Statistics
Matches: 547, Mismatches: 75, Indels: 10
0.87 0.12 0.02
Matches are distributed among these distances:
525 2 0.00
526 98 0.18
527 245 0.45
528 202 0.37
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (527 bp):
TCGATCCTCGGCTTGCACATTCTGCCTCTCTGGTCGGCTGAGCTCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATCCCAAGTCTAACCATACAGAGTTCATTCCCAATCTAAGATC
AGATCAGACCGAGGGCTGCGACAGCAAGATCGACAACACGAAGGGGGGATCGGACCAATCCTCGG
CTTGCGCATTCTACCTCTCCGAGCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGCTGTGGCAGCGGGACCGGCAGC
ACACAGAGAGGGACTGGGCCGATCCCCTACTTACGCATTATGCCTTTTCGGCCGGCTCAACACCC
GAACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATCCCTAGTCTAAGCTTACAGAGTT
CATTCCCAGTCTAAGATTAGACTAGACCGAGGGTTACAGCAGTAGGATAGACAGCACACAGGGGG
GACCAGG
Found at i:13883785 original size:26 final size:26
Alignment explanation
Indices: 13883756--13883808 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13883746 GTTGACTTAG
13883756 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
13883782 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13883808 G
1 G
13883809 ATCGAGCTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13885570 original size:26 final size:26
Alignment explanation
Indices: 13885540--13885592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13885530 GTTGACTTAG
13885540 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13885566 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13885592 G
1 G
13885593 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13887118 original size:157 final size:160
Alignment explanation
Indices: 13886738--13887130 Score: 411
Period size: 160 Copynumber: 2.5 Consensus size: 160
13886728 TTACGCATTC
* * * *
13886738 TGCCTCTCCGATCGGCTGAGCGCTCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
1 TGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * * **
13886803 ATT-CCATGTCTTAGCCCTAGCCAGACCGAGGGTTGTGGCAGTGGGACCGGCAACACGTAGAGGG
66 ATTCCCATGTCTAAGCACTAGCCAGACCGAGGCTTGCGGCAGCAGGACCGGCAACACGTAGAGGG
* *
13886867 GGATCGGGCTGATCCCCGACTTGCGCATAT
131 GAATCGGGCCGATCCCCGACTTGCGCATAT
* * * ** * * *
13886897 TACCTCTCTGACCAGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAAGCATACAGAGTT
1 TGCCTCTCCGACC-GGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* * * * * *
13886962 CATTCCCA-GTCTAAG-ATTAGACCGGATCGAGGCTTGCGGTAGCAGGATCGGCAGCACGTAG-G
65 CATTCCCATGTCTAAGCACTAG-CCAGACCGAGGCTTGCGGCAGCAGGACCGGCAACACGTAGAG
* * * * *
13887024 GGGAAT-GGGCCGGTCCCTGGCTTGCGTATTT
129 GGGAATCGGGCCGATCCCCGACTTGCGCATAT
** * *
13887055 TGCCTCTCCGACCGATTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
1 TGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
13887120 ATT-CCATGTCT
66 ATTCCCATGTCT
13887131 TAGCGTATGG
Statistics
Matches: 187, Mismatches: 43, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
156 3 0.02
157 49 0.26
158 30 0.16
159 19 0.10
160 83 0.44
161 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (160 bp):
TGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCCATGTCTAAGCACTAGCCAGACCGAGGCTTGCGGCAGCAGGACCGGCAACACGTAGAGGG
GAATCGGGCCGATCCCCGACTTGCGCATAT
Found at i:13887535 original size:26 final size:26
Alignment explanation
Indices: 13887487--13887539 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13887477 GTTGACTTAG
*
13887487 GCATATGAAGCTCATCCCCAGTCTAA
1 GCATATGAAGCTCATCCACAGTCTAA
* * *
13887513 GCATATGAAGTTCATTCATAGTCTAA
1 GCATATGAAGCTCATCCACAGTCTAA
13887539 G
1 G
13887540 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGCTCATCCACAGTCTAA
Found at i:13887820 original size:159 final size:159
Alignment explanation
Indices: 13887652--13888015 Score: 376
Period size: 158 Copynumber: 2.3 Consensus size: 159
13887642 TGCATGCCCG
* * * * *
13887652 TTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAAGGT
*** * * *
13887716 TATGGCAGTAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCAATATGCC
66 TACAACAGCAGGATCGACAGCACACAG-GGGGGACCGGGCCGATCCCCGACTTACGCAATATGCC
* *
13887781 TCTCCG-GCTGGCTCAACGCCCGAATGCTCA
130 TCTCCGATC-GGCTCAACGCCCGAACGCTCA
** * * *
13887811 TTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAAGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAAGG
* * * * * * * * *
13887874 TTGCAACAGCAGGATCGATAGCACATAGGGGGGATCGGGCCGGTCCCCGACTTGCGCATTCTGTC
65 TTACAACAGCAGGATCGACAGCACACAGGGGGGACCGGGCCGATCCCCGACTTACGCAATATGCC
* * * * *
13887939 TCTTCGATCGGCTGAGCGCCCGTACGCTCG
130 TCTCCGATCGGCTCAACGCCCGAACGCTCA
*
13887969 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13888016 TATGAAGTTC
Statistics
Matches: 165, Mismatches: 35, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 92 0.56
159 67 0.41
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAAGGT
TACAACAGCAGGATCGACAGCACACAGGGGGGACCGGGCCGATCCCCGACTTACGCAATATGCCT
CTCCGATCGGCTCAACGCCCGAACGCTCA
Found at i:13888016 original size:26 final size:26
Alignment explanation
Indices: 13887987--13888039 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13887977 GTTGGCTTAG
*
13887987 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13888013 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13888039 G
1 G
13888040 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13888540 original size:159 final size:156
Alignment explanation
Indices: 13888243--13888552 Score: 365
Period size: 158 Copynumber: 2.0 Consensus size: 156
13888233 AAGATCAGAT
* *
13888243 CGGACCGAGGGTTGCGGCAGCAAGATCGGTAGCATGTAGGGGGGACCGAACCGATCCCCGGCTTA
1 CGGACCGAGGGTTGCGGCAGCAAGACCGGTAGCATGTAGGGGGGACCGAACCGATCCCCGACTTA
* * * *
13888308 CGCATTCTGCCTCTCCGGCCGACTGAGCGCTCTACGCGCGTTTTGTGGGTTGGTTTAGGCACAGG
66 CGCATTATGCCTCTCCGACCGACTGAGCGCTCTACGCGCGTTTCGTGGGTTGGCTTAGGCACA-G
13888373 GAGTTCATTCCATGTCTAAGCCCCAGC
130 GAGTTCATTCCATGTCTAAGCCCCAGC
* * ** * * * *
13888400 CGGACTGAGGGTTGTGGCAGCGGGACCGGTAGCATGCT-GAGGGGGATCGAGCTGATTCCCGACT
1 CGGACCGAGGGTTGCGGCAGCAAGACCGGTAGCATG-TAG-GGGGGACCGAACCGATCCCCGACT
* ** * *
13888464 TGCGCATTATGCCTCTCCGACCGGTTGAGTGC-CTGCACGCGCGTTTCGTGGGTTTGCTTAGGCG
64 TACGCATTATGCCTCTCCGACCGACTGAGCGCTCT--ACGCGCGTTTCGTGGGTTGGCTTAGGC-
13888528 TACA-GAGTTCATTCCATGTCTAAGC
126 -ACAGGAGTTCATTCCATGTCTAAGC
13888553 ATACGGAGTT
Statistics
Matches: 128, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
157 34 0.27
158 46 0.36
159 45 0.35
161 3 0.02
ACGTcount: A:0.16, C:0.27, G:0.33, T:0.24
Consensus pattern (156 bp):
CGGACCGAGGGTTGCGGCAGCAAGACCGGTAGCATGTAGGGGGGACCGAACCGATCCCCGACTTA
CGCATTATGCCTCTCCGACCGACTGAGCGCTCTACGCGCGTTTCGTGGGTTGGCTTAGGCACAGG
AGTTCATTCCATGTCTAAGCCCCAGC
Done.