Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 77 of 138
Found at i:13889281 original size:26 final size:26
Alignment explanation
Indices: 13889251--13889303 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13889241 GTTAACTTAG
13889251 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13889277 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13889303 G
1 G
13889304 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13889800 original size:25 final size:26
Alignment explanation
Indices: 13889753--13889802 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
13889743 TGGCTTAGGA
*
13889753 ATACAGAGTTCATTCCATGTCTAAGC
1 ATACAGAGTTCATTCCATATCTAAGC
13889779 ATAC-GAGTTCATTCCCA-ATCTAAG
1 ATACAGAGTTCATT-CCATATCTAAG
13889803 ATCGGATTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATATCTAAGC
Found at i:13891225 original size:26 final size:26
Alignment explanation
Indices: 13891189--13891246 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
13891179 GTTGGCTTAG
* **
13891189 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13891215 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13891241 G-ATATG
1 GCATATG
13891247 ACTGGACAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13891283 original size:185 final size:185
Alignment explanation
Indices: 13890990--13891401 Score: 490
Period size: 185 Copynumber: 2.2 Consensus size: 185
13890980 CGTTCGTTTC
* * * * *
13890990 ATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-ATCTAAGCACACGAAGTTCATTCCTAGTCT
1 ATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACACGAAGTTCATTCCCAGTCT
* * * * * ** *
13891054 AAGATCGGACCGGACCGGGGGTTACGGCAGTAGGATAGACAGCACGCATTGGGGGACCAGGCCGA
65 AAGATAGGACCGGACAGAGGGTTACGACAGCAGGATAGACAGCACGCAGAGGGGGACCAGGCCAA
* * *
13891119 TCCCCGTCTTACGCTTTCTGCCTC-TCTAG-CAGGCTGAGCACCCACAAGCTCATTTT
130 TCCCCGACTTACGCATTCTACCTCTTC-AGCCA-GCTGAGCACCCACAAGCTCATTTT
* * * *
13891175 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCATATGGAGTTCATTCCCAGTCTA
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACACGAAGTTCATTCCCAGTCTA
* * * * *
13891240 AGATATGACTGGACAGAGGGTTGCGACAGCAGGATCA-ACAGCACGCAGAGGGTGACCGGGCCAA
66 AGATAGGACCGGACAGAGGGTTACGACAGCAGGAT-AGACAGCACGCAGAGGGGGACCAGGCCAA
* * * *
13891304 TCCCCGACTTACGCATTCTACCTCTTCGGCCAGCTTAGCACCCGCACGCTCATTTT
130 TCCCCGACTTACGCATTCTACCTCTTCAGCCAGCTGAGCACCCACAAGCTCATTTT
*
13891360 ATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13891402 CCCAGTCAGA
Statistics
Matches: 192, Mismatches: 31, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
184 2 0.01
185 185 0.96
186 5 0.03
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (185 bp):
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACACGAAGTTCATTCCCAGTCTA
AGATAGGACCGGACAGAGGGTTACGACAGCAGGATAGACAGCACGCAGAGGGGGACCAGGCCAAT
CCCCGACTTACGCATTCTACCTCTTCAGCCAGCTGAGCACCCACAAGCTCATTTT
Found at i:13891906 original size:26 final size:26
Alignment explanation
Indices: 13891856--13891908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13891846 GTTGGCTTAG
*
13891856 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13891882 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13891908 G
1 G
13891909 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13892269 original size:26 final size:26
Alignment explanation
Indices: 13892239--13892288 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13892229 GACTTAGGCG
13892239 TATGGAGTTCA-TCCACAGTCTAAGCA
1 TATGGAGTTCATTCC-CAGTCTAAGCA
13892265 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATTCCCAGTCTAAG
13892289 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TATGGAGTTCATTCCCAGTCTAAGCA
Found at i:13892759 original size:26 final size:26
Alignment explanation
Indices: 13892723--13892775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13892713 GTTGGCTTAG
13892723 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13892749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13892775 G
1 G
13892776 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13893851 original size:159 final size:158
Alignment explanation
Indices: 13893597--13893891 Score: 362
Period size: 159 Copynumber: 1.9 Consensus size: 158
13893587 CTAGTTAAGT
** *
13893597 GCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
1 GCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGT
* * * ** *
13893662 TGGACCAAGGGTTATGGCAACGGGACCGACAGCACGCAGAGG-GGGATCGGGCTGATCCCCGGTT
66 TGGACCAAGGGTTACGACAACAGGACCGACAGCA--CAGAGGCGGGATCGGGCCAATCCCCGGCT
*
13893726 TATGCATTATGCCTCTCCAACCGACTCAGC
129 TACGCATTATGCCTCTCCAACCGACTCAGC
* *
13893756 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAG-ATCAG
1 GCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCACCAG
* * * * * * *
13893819 ATTGGACCGATGGTTGCGATAGCAGGATCGACAGCACATAGGCGGGATCGGGCCAATCCCCGGCT
65 -TTGGACCAAGGGTTACGACAACAGGACCGACAGCACAGAGGCGGGATCGGGCCAATCCCCGGCT
13893884 TACGCATT
129 TACGCATT
13893892 CTACCTCTTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
157 5 0.04
158 30 0.26
159 79 0.69
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (158 bp):
GCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGT
TGGACCAAGGGTTACGACAACAGGACCGACAGCACAGAGGCGGGATCGGGCCAATCCCCGGCTTA
CGCATTATGCCTCTCCAACCGACTCAGC
Found at i:13894000 original size:26 final size:26
Alignment explanation
Indices: 13893949--13894001 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13893939 GTTGGGCTAG
* *
13893949 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
13893975 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
13894001 G
1 G
13894002 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:13894640 original size:159 final size:159
Alignment explanation
Indices: 13894394--13894833 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 159
13894384 TAGGATCGGT
* * * * * *
13894394 AGCACGTA-AAGGGGATCGGGCCTATCCTCGGCTTGCGCATTCTGCCTCTCCGGCC-GACTGAGC
1 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGACCAG-CTGAGC
* * * * *
13894457 GCCCGTATGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-
65 GCCCGCATGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAG
*
13894520 GTCAGACCGAGGGTTGTGGC-AGCGGGACTGAC
128 GTCAGACCGAGGGTTGT-GCTAGCAGGACTGAC
* * *
13894552 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGACCAGTTCAGCG
1 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGACCAGCTGAGCG
* * * *
13894617 CCCGCATGCTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATTCC-TAGTCTAAGATCAGGT
66 CCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAGGT
* * *
13894681 CGGACTGAGGGTTGTGCTAGCAGGATTGAC
130 CAGACCGAGGGTTGTGCTAGCAGGACTGAC
* * * * * * *
13894711 AGCCCGTAGGGGGGGATTGGGCCGATCCCCGGCTTGCCCACTCTGCCTC-TCCAGTCAGGCTGAG
1 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGA-CCA-GCTGAG
* * * *
13894775 CACCCGCACGCTCATTTCGTAGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAG
64 CGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13894834 TATACAGAGT
Statistics
Matches: 235, Mismatches: 38, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
158 16 0.07
159 162 0.69
160 56 0.24
161 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGACCAGCTGAGCG
CCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGGTC
AGACCGAGGGTTGTGCTAGCAGGACTGAC
Found at i:13894850 original size:26 final size:26
Alignment explanation
Indices: 13894814--13894885 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
13894804 TAGGCACACG
*
13894814 GAGTTCATTCCATGTCTAAGTATACA
1 GAGTTCATTCCATGTCTAAGCATACA
* *
13894840 GAGTTCATTCCATGTCTAAGCGTACG
1 GAGTTCATTCCATGTCTAAGCATACA
*
13894866 GATTTCATTCCCA-GTCTAAG
1 GAGTTCATT-CCATGTCTAAG
13894886 ATTTTAAGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 38 0.93
27 3 0.07
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
GAGTTCATTCCATGTCTAAGCATACA
Found at i:13895589 original size:26 final size:26
Alignment explanation
Indices: 13895553--13895605 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13895543 GTTGACTTAG
* *
13895553 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
13895579 GCATACAGAGTTCTTTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13895605 G
1 G
13895606 ATCATAACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13895774 original size:26 final size:26
Alignment explanation
Indices: 13895738--13895789 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13895728 TCGGCTTCGA
*
13895738 CATATGGAGTTCATTCCTTGTCTAAG
1 CATATGGAGTTCATTCCTAGTCTAAG
13895764 CATATGGAGTTCATTCCTAGTCTAAG
1 CATATGGAGTTCATTCCTAGTCTAAG
13895790 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (26 bp):
CATATGGAGTTCATTCCTAGTCTAAG
Found at i:13896107 original size:171 final size:170
Alignment explanation
Indices: 13895831--13896413 Score: 499
Period size: 171 Copynumber: 3.3 Consensus size: 170
13895821 ACCAGTAGCA
* * * * *** * *
13895831 GGATCGACAGCACGTAGGGGGGATCGGACCGATCCTCAATTTACGCATTCTACCTCTCTGATCGG
1 GGATCGACAGCACGCAGGGGGGACCGGGCTGATCCTCGGCTTACGCATTATGCCTCTCTGATCGG
* *
13895896 CTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
* *
13895961 CCCAGCCAGACCTAGGGTTATGGTAGCAGGACCGACAGCG
131 CCCAGTCAGACCCAGGGTTATGGTAGCAGGACCGACAGCG
* * **
13896001 GGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCTCGGCTTACGCATTATGCCTCTCTGGTTA
1 GGATCGACAGCACGCAG-GGGGGACCGGGCTGATCCTCGGCTTACGCATTATGCCTCTCTGATCG
** * * *
13896066 GCTGAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAA
65 GCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAA
** ** * * * *
13896130 GCATACGGAGTTCATTCCCA--GTCCATGATCAGACCGGATCAAGGGTTGCGACAGCA
129 GC---CCCAG-TCAGACCCAGGGT-TATGGT-AG-CAGGA-C--------CGACAGCG
* * * * *
13896186 GGATCGACAGCACGCAGGAGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGG
1 GGATCGACAGCACGCAGGGGGGACCGGGCTGATCCTCGGCTTACGCATTATGCCTCTCTGATCGG
* * * * *
13896251 TTGAGCACCCGTACGCTCATTTCTTGGGTTGGGTTAGGCATACAGAGTTTATTCCATGTCTAAGC
66 CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
* * * * * *
13896316 CCCAGTCGGATCGAGGGTTGTGGTA-CAGGACTGGCAGCG
131 CCCAGTCAGACCCAGGGTTATGGTAGCAGGACCGACAGCG
* ** * * *
13896355 GGATCGATAGCACGCAGAGGGGGGTCGGGTTGATTCTTGGCTTACGCATTATGCCTCTC
1 GGATCGACAGCACGCAG-GGGGGACCGGGCTGATCCTCGGCTTACGCATTATGCCTCTC
13896414 CAGATGGCCT
Statistics
Matches: 318, Mismatches: 73, Indels: 44
0.73 0.17 0.10
Matches are distributed among these distances:
169 21 0.07
170 48 0.15
171 90 0.28
172 3 0.01
173 2 0.01
174 7 0.02
175 7 0.02
176 4 0.01
177 2 0.01
178 4 0.01
180 5 0.02
181 6 0.02
182 2 0.01
183 3 0.01
184 90 0.28
185 24 0.08
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (170 bp):
GGATCGACAGCACGCAGGGGGGACCGGGCTGATCCTCGGCTTACGCATTATGCCTCTCTGATCGG
CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
CCCAGTCAGACCCAGGGTTATGGTAGCAGGACCGACAGCG
Found at i:13896506 original size:26 final size:26
Alignment explanation
Indices: 13896470--13896522 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13896460 GTTGACTTAG
* *
13896470 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13896496 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13896522 G
1 G
13896523 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13896554 original size:366 final size:353
Alignment explanation
Indices: 13895827--13896719 Score: 1108
Period size: 355 Copynumber: 2.5 Consensus size: 353
13895817 CAGGACCAGT
* * *** * * *
13895827 AGCAGGATCGACAGCACGTAGGGGGGATCGGACCGATCCTCAATTTACGCATTCTACCTCTCTGA
1 AGCAGGATCGACAGCACGTA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
*
13895892 TCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
65 TCGGTTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
* *
13895957 AAGCCCCAGCCAGACCTAGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGG
130 AAGCCCCAG-CAGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGG
* * *
13896022 GGACCGGGTTGATCCTCGGCTTACGCATTATGCCTCTCTGGTTAGCTGAGTGCCCGCATGCTCAT
194 GGACCGGGTTGATCCTCGGCTTACGCATTATGCCTCTCTGGTTAGCTGAGCGCCCACACGCTCAT
* *
13896087 TTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
259 TTCGGGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
* *
13896152 CCATGATCAGACCGGATCAAGGGTTGCGAC
324 CCAAGATCAGACCGGATCAAGGGTTGCAAC
* * *
13896182 AGCAGGATCGACAGCACGCAGGAGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGTAGG-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * * *
13896247 TCGGTTGAGCACCCGTACGCTCATTTCT-TGGGTTGGGTTAGGCATACAGAGTTTATTCCATGTC
65 TCGGTTGAGCACCCGCACGCTCGTTT-TGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
* * * * *
13896311 TAAGCCCCAGTCGGATCGAGGGTTGTGGTA-CAGGACTGGCAGCGGGATCGATAGCACGCAGAGG
129 TAAGCCCCAG-CAGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGG
** * * *
13896375 GGGGTCGGGTTGATTCTTGGCTTACGCATTATGCCTCTCCAGATGGCCTCTCCGATCGGTTGAGC
193 GGGACCGGGTTGATCCTCGGCTTACGCATTATGCCTCT-C---TGG--T-T---A---GCTGAGC
* *
13896440 GCCCACACGCTCA-TTCGGGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACAG
245 GCCCACACGCTCATTTCGGGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG
* * ** *
13896504 AGTTGATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCAAC
310 AGTTCATTCCCAGTCCAAGATCAGACCGGATCAAGGGTTGCAAC
* * * * *
13896548 AGCAGGATCGGCAGCACGTAGGGGGATCGGGCCGATCGCTGGCTTGCGTATTCTGCCTCTCCGGT
1 AGCAGGATCGACAGCACGTAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * * **
13896613 CGGTTGAACACCGGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 CGGTTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* *
13896678 AGCCCCAGCTAGACCGAGGGTTGTGGCAGCAAGACCGACAGC
131 AGCCCCAGC-AGACCGAGGGTTGTGGTAGCAGGACCGACAGC
13896720 ATGCAGAGGG
Statistics
Matches: 454, Mismatches: 66, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
354 67 0.15
355 134 0.30
356 1 0.00
358 3 0.01
360 1 0.00
361 1 0.00
364 3 0.01
365 114 0.25
366 114 0.25
367 16 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (353 bp):
AGCAGGATCGACAGCACGTAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
CGGTTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
AGCCCCAGCAGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGG
ACCGGGTTGATCCTCGGCTTACGCATTATGCCTCTCTGGTTAGCTGAGCGCCCACACGCTCATTT
CGGGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCC
AAGATCAGACCGGATCAAGGGTTGCAAC
Found at i:13896824 original size:158 final size:158
Alignment explanation
Indices: 13896567--13896996 Score: 404
Period size: 158 Copynumber: 2.7 Consensus size: 158
13896557 GGCAGCACGT
* * * * ** * * *
13896567 AGGGGGATCGGGCCGATCGCTGGCTTGCGTATTCTGCCTCTCCGGTCGGTTGAACACCGGCACGC
1 AGGGGGATAGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGCAC-GCTGAGCACCCGCACGC
* * * * *
13896632 CCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACCGAG
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TGTCTAAGCACCAGACTAGACCGAG
* *
13896696 GGTTGTGGCAGCAAGACCGACAGCATGCAG
129 GGTTATGGCAGCAAGACCGACAGCACGCAG
* * *
13896726 AGGGGGATAGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGCACGCTCAGCGCCCGCACGCT
1 AGGGGGATAGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGCACGCTGAGCACCCGCACGCT
* * * *** *
13896791 CGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCTAATCTAAG-ATTGGACTGGACCGAGG
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT-GTCTAAGCACCAGACTAGACCGAGG
* * * *
13896855 GTTATGGCAGTAGGATCGACAGCACGTAG
130 GTTATGGCAGCAAGACCGACAGCACGCAG
* * * * * *
13896884 -GGGGGACCA-GGCCGATCCCCGGCTTGCGCATTCTACCAC-TCCCACGACTGAGCATCCGCACG
1 AGGGGGA-TAGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGCACG-CTGAGCACCCGCACG
* * *
13896946 CTCCTGTCGTGGGTT-AGCTTAGGCATACGGAGTTCATTACTTGTCTAAGCA
64 CTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATT-CCTGTCTAAGCA
13896997 TACAAAGTTC
Statistics
Matches: 219, Mismatches: 45, Indels: 15
0.78 0.16 0.05
Matches are distributed among these distances:
156 7 0.03
157 84 0.38
158 88 0.40
159 40 0.18
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGGGGATAGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGCACGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTGTCTAAGCACCAGACTAGACCGAGGG
TTATGGCAGCAAGACCGACAGCACGCAG
Found at i:13896993 original size:157 final size:153
Alignment explanation
Indices: 13896496--13896994 Score: 419
Period size: 157 Copynumber: 3.2 Consensus size: 153
13896486 CCCAGTTTAA
* * ** * * *** *
13896496 GCATACAGAGTTGATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCAACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCTTGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * ** * *
13896561 GCACGTA-GGGGGATCGGGCCGATCGCTGGCTTGCGTATTCTGCCTCTCCGGTCGGTTGAACACC
66 GCACGTAGGGGGGA-CAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC-CAC-GCTGAGCACC
*
13896625 GGCACGC-CCGTTTTGTGGGTTGGCTTAG
128 -GCACGCTCC-TTTCGTGGGTT-GCTTAG
* * **** * * *
13896653 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCTAGACCGAGGGTTGTGGCAGCAAGACCGAC
1 GCATACGGAGTTCATTCCTTGTCTAAGATTGGA-CTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
13896717 AGCATGCAGAGGGGGATAGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGCACGCTCAGCGC
65 AGCACGTAG-GGGGGACA-GGCCGATCCCTGGCTTGCGCATTCTGCCTC-TCCCACGCTGAGC-A
* *
13896782 CCGCACGCTCGTTTCATGGGTTGACTTAG
126 CCGCACGCTCCTTTCGTGGGTTG-CTTAG
* ** * *
13896811 GCATACGTAGTTCATTCCTAATCTAAGATTGGACTGGACCGAGGGTTATGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTTGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
13896876 GCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCACTCCCACGACTGAGCATCC
66 GCACGTAGGGGGGA-CAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCCACG-CTGAGCA-CC
*
13896941 GCACGCTCCTGTCGTGGGTTAGCTTAG
128 GCACGCTCCTTTCGTGGGTT-GCTTAG
*
13896968 GCATACGGAGTTCATTACTTGTCTAAG
1 GCATACGGAGTTCATTCCTTGTCTAAG
13896995 CATACAAAGT
Statistics
Matches: 263, Mismatches: 66, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
156 7 0.03
157 135 0.51
158 81 0.31
159 38 0.14
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCTTGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGACAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCCACGCTGAGCACCGCA
CGCTCCTTTCGTGGGTTGCTTAG
Found at i:13897718 original size:26 final size:26
Alignment explanation
Indices: 13897689--13897741 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13897679 GTTAACTTAG
*
13897689 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTATAA
* *
13897715 GCATACGAAGTTTATTCCCAGTATAA
1 GCATACGAAGTTCATCCCCAGTATAA
13897741 G
1 G
13897742 ATCCAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTATAA
Found at i:13898223 original size:26 final size:26
Alignment explanation
Indices: 13898187--13898265 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
13898177 GTTGGCTTAG
*
13898187 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
13898213 GCATGCGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
13898239 GCATATGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
13898265 G
1 G
13898266 ATTTTGAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 1 0.02
26 47 0.98
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13898964 original size:26 final size:26
Alignment explanation
Indices: 13898935--13898987 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13898925 GTTGACTTAG
* *
13898935 GCATAAGGATTTCA-TCCCTAGTCTAA
1 GCATAAGAAGTTCATTCCC-AGTCTAA
*
13898961 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
13898987 G
1 G
13898988 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:13899503 original size:157 final size:156
Alignment explanation
Indices: 13899205--13899496 Score: 345
Period size: 157 Copynumber: 1.9 Consensus size: 156
13899195 GGGGATTGGA
* * *
13899205 TCAATCCCTGGCTTACGCATTATGCCTCTCCGATCGGTTCAGCGCCCATACGCTCGTTTCATGGG
1 TCAATCCCCGACTTACGCATTATGCCTCTCCGATCGGTTCAGCGCCCATA-GCTCATTTCATGGG
* **
13899270 TTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTAAGGTAGCA
65 TTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACTGAAGGTTAAGACAGCA
* *
13899335 GGATCGATAGCACGTAGAGGGACCGGG
130 AGACCGATAGCACGTAGAGGGACCGGG
* * * * *
13899362 TCAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCTGCAT-GCTCATTTCGTGG
1 TCAATCCCCGACTTACGCATTATGCCTCTCCGATCGGTTCAGCGCC--CATAGCTCATTTCATGG
* * * * * ** *
13899426 GTTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGATTGGACCGAA-TCGAAGGTTACGACAG
64 GTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACT-GAAGGTTAAGACAG
13899490 CAAGACC
128 CAAGACC
13899497 AGTAGCAAGA
Statistics
Matches: 111, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
156 1 0.01
157 107 0.96
159 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (156 bp):
TCAATCCCCGACTTACGCATTATGCCTCTCCGATCGGTTCAGCGCCCATAGCTCATTTCATGGGT
TGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACTGAAGGTTAAGACAGCAA
GACCGATAGCACGTAGAGGGACCGGG
Found at i:13900183 original size:25 final size:26
Alignment explanation
Indices: 13900147--13900195 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
13900137 TGACTTAGGC
*
13900147 ATACGGAGTTCA-TCCCAGTCTAATT
1 ATACGGACTTCATTCCCAGTCTAATT
13900172 ATACGGACTTCATTCCCAGTCTAA
1 ATACGGACTTCATTCCCAGTCTAA
13900196 GATCGAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (26 bp):
ATACGGACTTCATTCCCAGTCTAATT
Found at i:13900675 original size:26 final size:25
Alignment explanation
Indices: 13900639--13900690 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
13900629 GTTGGCTTAG
13900639 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
13900665 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
13900690 G
1 G
13900691 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:13900860 original size:26 final size:26
Alignment explanation
Indices: 13900831--13900884 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13900821 GGGTTGACTT
13900831 AGCATACGGAGTTCATCCCCAGTCTA
1 AGCATACGGAGTTCATCCCCAGTCTA
* *
13900857 AGCATACGGAGTTCATTCCCATTCTA
1 AGCATACGGAGTTCATCCCCAGTCTA
13900883 AG
1 AG
13900885 ATTGAATCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCATCCCCAGTCTA
Found at i:13900962 original size:193 final size:195
Alignment explanation
Indices: 13900587--13900970 Score: 445
Period size: 194 Copynumber: 2.0 Consensus size: 195
13900577 TGCTCATTCT
* * * *
13900587 GCCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCCGTGGGTTGGCTTAGGCATACAGAGTTC
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCCATGGGTTGACTTAGGCATACAGAGTTC
* **
13900652 ATTCCATGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCA
66 ATCCCATGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCA
* * * * *
13900717 GCAAGATCAACAGCATGTAGGGGGCCCGGGCCAATCCTCAGCTTGTGCATTCTGCCTCTCCCGTC
131 GCAAGATCAACAGCACGCAGGGGGACCGGGCCAATCCTCAGCTTGCGCATTCTACCTCTCCCGTC
** * *
13900782 GCCTCTCCGACCGGTTGAGCGCCTGCACGCTCATTT-CATGGGTTGACTTA-GCATACGGAGTTC
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCCATGGGTTGACTTAGGCATACAGAGTTC
* * * * *
13900845 ATCCCCA-GTCTAAGCATACGGAGTTCATTCCCATTCTAAGATTGAATCGGATCGAGGGTTACGG
66 AT-CCCATGTCTAAGCATACAGAGTTCATT-CCAGTCTAAGATCGAACCGGACCGAGGGTTACGG
* * * ** ** *
13900909 TAGTAGGATCAGTAGCACGCAGGGGGGATTGGG-CGATCCTC-GCTTGCGCATTCTACCTCTCC
129 CAGCAAGATCAACAGCACGCA-GGGGGACCGGGCCAATCCTCAGCTTGCGCATTCTACCTCTCC
13900971 GGTTGGCTGA
Statistics
Matches: 157, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
193 54 0.34
194 64 0.41
195 39 0.25
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (195 bp):
GCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCCATGGGTTGACTTAGGCATACAGAGTTC
ATCCCATGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCA
GCAAGATCAACAGCACGCAGGGGGACCGGGCCAATCCTCAGCTTGCGCATTCTACCTCTCCCGTC
Found at i:13901292 original size:688 final size:695
Alignment explanation
Indices: 13900105--13901631 Score: 1748
Period size: 687 Copynumber: 2.2 Consensus size: 695
13900095 CCTCTCCAGT
*
13900105 CGGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTA
1 CGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
** * ** * *
13900169 ATTATACGGACTTCATTCCCAGTCTAAGATCGAATTAGATCGAGGGTTACGACAGCAGGATTCGA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGGCAGTAGGA-TCG-
* * * * *
13900234 CAGCACCCAGGGGGGACTGGGCCGATCCCTAGCTTGCGTATTCTGCCTCTCAGGTCGGTTGAGCG
129 TAGCACGCAGGGGGGACTGGGCCGATCCCTAGCTTGCGCATTCTACCTCTCAGGTCGGCTGAGCG
* *
13900299 TGCACATGCCAGTTTCATGGGTTGGCTTAGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCG
194 -GCACACGCCAGTTTCATGGGTTGGCTTAGAATAGGGAGTTCATTCCATGTCTAAACCCCAACCG
* * * * * *
13900364 GACCGAGGGTTGTGGCAGTGAGACTGTAGCATGTAGAGGGGGACCGAGCCAATCAACGACTTGTG
258 GACCGAGGGTTGTGGCAGCGAGACGGTAACACGTAGAGGGGGACCGAGCCAATCAACGACATGCG
* * * ** * * * *
13900429 CATTATGGCTCTCCTGTCAGCTCAGCGCCCTGAACACTCATTTTGTGGGTTGTCTTAGGCATACG
323 CATTATGCCTCTCCTGTCAGCTCAACACCCTGAACACTCATTTCATGAGTGGTCCTAGGAATACG
* * * *
13900494 GATCTCATTCCCAGTCTAAGATCAGACCGAGGATTACGCAGTAGGATTGACAGCACGTAGGGGGG
388 GAGCTCATTCCCAGTCTAAGATCAGACCGAGGATTACGCAGCAGGATCGACAGCACGCAGGGGGG
* * * * * * *
13900559 ACCAGGCCGATCCTCGCTTGCTCATTCTGCCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTC
453 ACCAGGCCGATCCCCGATTACGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTT-
** *
13900624 CGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CCAGTC
517 CGTGGGTTGGCTTAACCATACGA-AGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATC
* * * *
13900687 TAAGATCGAACCGGACCGAGGGTT-GT-GG-C-AGCA-A-GATCAACAGCATGT-AGGGGGCCC-
581 TAAGATAGAACCGGACCAAGGGTTAGTAGGACTAGCACAGGATCAACAGCATGTAAAGAGGCCCG
* *
13900744 GGGCCAATCCTCAGCTTGTGCATTCTGCCTCTCCCG-TCG-CCTCTCCGAC
646 GGGCCAATCCTCAGCTTGTGCATTCGGCCTCTCCGGCT-GACCTCTCCGAC
* *
13900793 CGGTTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTA-GCATACGGAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * *
13900857 AGCATACGGAGTTCATTCCCATTCTAAGATTGAATCGGATCGAGGGTTACGGTAGTAGGATCAGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGGCAGTAGGATC-GT
* * * *
13900922 AGCACGCAGGGGGGATTGGG-CGAT-CCTCGCTTGCGCATTCTACCTCTCCGGTTGGCTGAGC-G
130 AGCACGCAGGGGGGACTGGGCCGATCCCTAGCTTGCGCATTCTACCTCTCAGGTCGGCTGAGCGG
* * *
13900984 CCCGACGCCCA-TTTCATGGGTTTGG-TTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCCAG
195 CAC-ACG-CCAGTTTCATGGG-TTGGCTTA-GAATAGGGAGTTCATTCCATGTCTAA-ACCCCAA
* * * * * * *
13901047 TCGGACCGAGGGTTGTGGCAGCGAGACCGGTAACACGTAGAGTGGGATCGGGCCGATCATCGCCA
255 CCGGACCGAGGGTTGTGGCAGCGAGA-CGGTAACACGTAGAGGGGGACCGAGCCAATCAACGACA
* * * **
13901112 TGCGTATTATGCCTCTTC-GATCGGCTCAACACCC-GAATGCTCATTTCATGAGTGGTCCTAGGA
319 TGCGCATTATGCCTCTCCTG-TCAGCTCAACACCCTGAACACTCATTTCATGAGTGGTCCTAGGA
* * * * *
13901175 ATACGGAGCTCATTGCCAGTCTAAGATCGGATCGAGGATTACGGTAGCAGGATCGATAGCACGCA
383 ATACGGAGCTCATTCCCAGTCTAAGATCAGACCGAGGATTAC-GCAGCAGGATCGACAGCACGCA
* * * *
13901240 GGGGGGACCGGGCTGATCCCCAGATTACGCATTCTACCTCTCCGATCGACTGAGCGCCTGCACGC
447 GGGGGGACCAGGCCGATCCCC-GATTACGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGC
* *
13901305 TCATTTCGTGGGTTGGCTTAACCATACGAAGTTTATTCCATGTCTAAGCATATAGAGTTCATTCC
511 TCATTTCGTGGGTTGGCTTAACCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
* *
13901370 CAATCTAAGATAGAACCGGACTAAGGGTTGCAGTAGCAGGACTAGCAGCAGGATCGACAGCATGT
576 CAATCTAAGATAGAACCGGACCAAGGGTT--AGT---AGGACTAGCA-CAGGATCAACAGCATGT
*** ** * * *
13901435 AAAGAGGCCCGGGGTTGATCCTTGGCTTGTGCATTCGGCCTCTCCGGCTGACTTCTCTGAT
635 AAAGAGGCCCGGGGCCAATCCTCAGCTTGTGCATTCGGCCTCTCCGGCTGACCTCTCCGAC
* * * * *
13901496 CAGTTGACCGCCTGTACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
13901561 AGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGATCAAGGGTT-CTGGCAATAGGATCGG
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTAC-GGCAGTAGGATC-G
13901625 TAGCACG
129 TAGCACG
13901632 AACTGAGGGT
Statistics
Matches: 698, Mismatches: 110, Indels: 46
0.82 0.13 0.05
Matches are distributed among these distances:
683 3 0.00
684 14 0.02
685 63 0.09
686 93 0.13
687 174 0.25
688 164 0.23
691 2 0.00
695 2 0.00
696 1 0.00
697 4 0.01
699 1 0.00
700 13 0.02
701 7 0.01
702 30 0.04
703 41 0.06
704 86 0.12
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (695 bp):
CGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGGCAGTAGGATCGTA
GCACGCAGGGGGGACTGGGCCGATCCCTAGCTTGCGCATTCTACCTCTCAGGTCGGCTGAGCGGC
ACACGCCAGTTTCATGGGTTGGCTTAGAATAGGGAGTTCATTCCATGTCTAAACCCCAACCGGAC
CGAGGGTTGTGGCAGCGAGACGGTAACACGTAGAGGGGGACCGAGCCAATCAACGACATGCGCAT
TATGCCTCTCCTGTCAGCTCAACACCCTGAACACTCATTTCATGAGTGGTCCTAGGAATACGGAG
CTCATTCCCAGTCTAAGATCAGACCGAGGATTACGCAGCAGGATCGACAGCACGCAGGGGGGACC
AGGCCGATCCCCGATTACGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTG
GGTTGGCTTAACCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
TAGAACCGGACCAAGGGTTAGTAGGACTAGCACAGGATCAACAGCATGTAAAGAGGCCCGGGGCC
AATCCTCAGCTTGTGCATTCGGCCTCTCCGGCTGACCTCTCCGAC
Found at i:13901565 original size:26 final size:26
Alignment explanation
Indices: 13901536--13901588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13901526 GTTGACTTAG
13901536 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13901562 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13901588 G
1 G
13901589 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13901782 original size:26 final size:26
Alignment explanation
Indices: 13901752--13901807 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13901742 TGGGTTGGCT
**
13901752 TAAGCATATGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
13901778 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
13901804 TAAG
1 TAAG
13901808 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:13901993 original size:26 final size:26
Alignment explanation
Indices: 13901964--13902015 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13901954 GTTGACTTAG
* *
13901964 GCATACAAATTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* *
13901990 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
13902016 AGAGTTTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.29, G:0.10, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:13902693 original size:25 final size:26
Alignment explanation
Indices: 13902658--13902707 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
13902648 AACTTAGGCA
13902658 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
13902684 ATAC-GAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
13902708 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:13903348 original size:185 final size:183
Alignment explanation
Indices: 13902991--13903419 Score: 475
Period size: 185 Copynumber: 2.3 Consensus size: 183
13902981 GGGGTTGACT
* * * *
13902991 AGCATACGGAGTTCATTCCCAGTCTAAGATCATACCGGACCAAGGGTTGC-AGCAGCAGGATCGC
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAA-GGTTGCGA-TAGCAGGATCGA
* * * *
13903055 CAGCACGTAGGGGGGATCGGATCGGTCCCCAACTTGTACATTCTGCCTCTCCGATCGGCTGAGCG
64 CAGCACGCAGGGGGGATCGGATCAGTCCCCAACTTGCACATTCTGCCTCTCCGATCGGCTGAGCA
** * *
13903120 CCTGCACGCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTA
129 CCCACACACTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATACCATATCTA
* * *
13903175 AGCATATGGAGTTCATTCCTAATCTAAGATCAGACCGGATCGAAGGTTGCGATAGCAGGATCGAC
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAAGGTTGCGATAGCAGGATCGAC
* * **** * *
13903240 AGCACGCAGGAGGGGATTGGGTCAGTCCCTGGTTTGCGCATTCTGCCTCTCCGGAT-GGTTGAGC
65 AGCACGCAGG-GGGGATCGGATCAGTCCCCAACTTGCACATTCTGCCTCTCC-GATCGGCTGAGC
* * * * * *
13903304 ACCCATACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATATCTA
128 ACCCACACACTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATACCATATCTA
* ** * * *
13903360 AGCATACGGAGATCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGATAGCAGGA
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAAGGTTGCGATAGCAGGA
13903420 CCAGCAGCAG
Statistics
Matches: 202, Mismatches: 39, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
184 61 0.30
185 138 0.68
186 3 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (183 bp):
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAAGGTTGCGATAGCAGGATCGACA
GCACGCAGGGGGGATCGGATCAGTCCCCAACTTGCACATTCTGCCTCTCCGATCGGCTGAGCACC
CACACACTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATACCATATCTA
Found at i:13904088 original size:26 final size:26
Alignment explanation
Indices: 13904059--13904108 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13904049 GGCTTAGGAT
*
13904059 TACGACGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
13904085 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
13904109 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:13904486 original size:158 final size:158
Alignment explanation
Indices: 13904208--13904502 Score: 389
Period size: 158 Copynumber: 1.9 Consensus size: 158
13904198 CTGCCTCTCC
*
13904208 GGCTAGCTGAGTGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
1 GGCTAGCTGAGTGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
** * * * * * *
13904273 CTAAGCCCCAACTAGATGGAGGGTTCTGGCAACGGGACTAGCAGCATGTAGAGGGGGACCGGGTC
66 CTAAGCCCCAACTAGACCGAGGGTTCTGGCAACGGGACGAGCAACATGCACAGGGGGACCAGGCC
13904338 GATCCCCAGCTCGTGCATTTGCCCTTTT
131 GATCCCCAGCTCGTGCATTTGCCCTTTT
* *
13904366 GGCTGGCTGAGTGCCCGCGTGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
1 GGCTAGCTGAGTGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * ** *
13904431 CTAAGCCCC-AGTCGGACCCGA-GGTTGTGGCAGTGGGATCGA-CAACATGCACAGGGGGATCAG
66 CTAAGCCCCAACT-AGA-CCGAGGGTTCTGGCAACGGGA-CGAGCAACATGCACAGGGGGACCAG
13904493 GCCGATCCCC
128 GCCGATCCCC
13904503 GGCTTACGCA
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
157 2 0.02
158 111 0.95
159 4 0.03
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (158 bp):
GGCTAGCTGAGTGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAACTAGACCGAGGGTTCTGGCAACGGGACGAGCAACATGCACAGGGGGACCAGGCC
GATCCCCAGCTCGTGCATTTGCCCTTTT
Found at i:13905429 original size:26 final size:25
Alignment explanation
Indices: 13905393--13905442 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
13905383 TGGCTTAGGC
*
13905393 ATACGGAGTTCATTCCAGGTCTAAGG
1 ATACGAAGTTCATTCCA-GTCTAAGG
13905419 ATACGAAGTTCATTCCAGTCTAAG
1 ATACGAAGTTCATTCCAGTCTAAG
13905443 ATTGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
ATACGAAGTTCATTCCAGTCTAAGG
Found at i:13906589 original size:310 final size:307
Alignment explanation
Indices: 13905983--13906600 Score: 794
Period size: 307 Copynumber: 2.0 Consensus size: 307
13905973 TTGTGGCACC
* * *
13905983 AGGACCGGCAGCACGCAGAGGGGGATCGAGTCAATCCCTGGCTTGTGCATTATGCCTCTTCGGTC
1 AGGACCGGCAGCACGCAGAGGGGGACCGAGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGGTC
** * ** ** *
13906048 AGCTCAGCGTCCGAACGCTCATTTTGTGGGTTGAATTAGGCATACGGAGTTCATTCCAGTCTAAG
66 AGCTCAAAGTCCAAACGCTCATTTCATGCATTGAATTAGGCATACAGAGTTCATTCCAGTCTAAG
* * * * * *
13906113 ATCGAACCGGACCAAGGGTTGGTGGCAAGATCGATAGCACACAGGGGGGATTGGGCCGGTCCCCG
131 ATCGAACCAGACCAAGGGTTGGTAGCAAGATCGACAACACACAGGGGGGATTAGGCCGGTACCCG
* * * * * * * *
13906178 CTTAGCGTTCTGCCTCTCTGGATGGCTGAGTGCTCGTACGCTTGTTTCGTGGGTTGGCATAGGCA
196 CTTAGCGTTCTGCCTCTCCGGATGGCTGAGAGCCCATACACTCGTTTCATAGGTTGGCATAGGCA
* *
13906243 TACAGAGTTCATTCCATGTCTAAGCATACGGAGATCATTCCCAGTCT
261 TACAGAGTTCATTCCATATCTAAGCATACAGAGATCATTCCCAGTCT
* *
13906290 AGGATCGGCAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCT-TTCTGG-
1 AGGACCGGCAGCACGCAGAGGGGGACCGAGCCAATCCCTGGCTTGCGCATTATGCCTCTTC-GGT
* *
13906353 CTAGCTCAAAGTCCAAACGCTCATTTCATGCATTGACTTAGGGATACAGAGTTCATTCCTAGTCT
65 C-AGCTCAAAGTCCAAACGCTCATTTCATGCATTGAATTAGGCATACAGAGTTCATTCC-AGTCT
* * * ** *
13906418 AAGATCGGACTAGACCGA-GGTTGCGTAGCAAGATCGACAACATGCAGGAGGGGATTAGGTCGGT
128 AAGATCGAACCAGACCAAGGGTTG-GTAGCAAGATCGACAACACACAGG-GGGGATTAGGCCGGT
*
13906482 ACCGGCTT-GCGCATTCTGCCTCTCCGGATGGCTGAGAGCCCATACACTCGTTTCATAGGTTGGC
191 ACCCGCTTAGCG--TTCTGCCTCTCCGGATGGCTGAGAGCCCATACACTCGTTTCATAGGTTGGC
*
13906546 TTAGGCATACAGAGTTCATTCCATATCTAAGCATACAGAGATCATTCCCAGTCT
254 ATAGGCATACAGAGTTCATTCCATATCTAAGCATACAGAGATCATTCCCAGTCT
13906600 A
1 A
13906601 AGATTGGACC
Statistics
Matches: 265, Mismatches: 39, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
306 4 0.02
307 106 0.40
308 41 0.15
309 19 0.07
310 95 0.36
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (307 bp):
AGGACCGGCAGCACGCAGAGGGGGACCGAGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGGTC
AGCTCAAAGTCCAAACGCTCATTTCATGCATTGAATTAGGCATACAGAGTTCATTCCAGTCTAAG
ATCGAACCAGACCAAGGGTTGGTAGCAAGATCGACAACACACAGGGGGGATTAGGCCGGTACCCG
CTTAGCGTTCTGCCTCTCCGGATGGCTGAGAGCCCATACACTCGTTTCATAGGTTGGCATAGGCA
TACAGAGTTCATTCCATATCTAAGCATACAGAGATCATTCCCAGTCT
Found at i:13907810 original size:26 final size:25
Alignment explanation
Indices: 13907773--13907830 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
13907763 GTTGACTTAG
13907773 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCAT-CCCAGTCTAA
* *
13907799 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATCCCAGTCTAA
13907824 -CAT-CGAA
1 GCATACGAA
13907831 CCGAACTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.10
24 3 0.10
25 9 0.31
26 14 0.48
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:13908457 original size:185 final size:183
Alignment explanation
Indices: 13908114--13908681 Score: 552
Period size: 185 Copynumber: 3.0 Consensus size: 183
13908104 GTTGACTTAG
* * * * *
13908114 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCAAGGGTTGCAGCAGTAAGATCG-C
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACGAA-GGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
13908177 TAGCACGTAAG-GGGGACCGGGCCGGTCCCCGACTTGTGCATTCTGCCTATCCGACCGGCTGAGC
64 -AGCACGCAGGAGGGGATCGGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGA-TGGCTGAGT
* * * * * *
13908241 GCCCGCACGCTCATTTCATAGGTTAGCTTAGGCATACGGAGTTCATACCATGTCTAA
127 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
13908298 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAAGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CGAAGGTTGCGGCAGCAGGATCGACA
* * *
13908363 GCACGCAGGAGGGGATTGGGTCGGTCCCTGGCTTGCGCATTCTACCTCTCCGGATGGCTGAGTGC
65 GCACGCAGGAGGGGATCGGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCC-GATGGCTGAGTGC
** * *
13908428 CCATACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATATCTAA
129 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
13908483 GCATACGGAGATCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACAGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CGAAGG-T----T-GC-GG--CAGCA
* * * * *
13908548 GCAAGATCGACAGCATGCAGGAGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGTCTCT-CTA
56 G---GATCGACAGCACGCAGGAGGGGATCGGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGA
* *
13908612 GTCGGCTGAGCT-CCTGCACACTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
118 -T-GGCTGAG-TGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
13908676 CTAA
180 CTAA
13908680 GC
1 GC
13908682 CCCAGTCGGA
Statistics
Matches: 316, Mismatches: 48, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
184 58 0.18
185 132 0.42
186 3 0.01
190 1 0.00
191 2 0.01
192 2 0.01
194 5 0.02
195 1 0.00
196 2 0.01
197 109 0.34
198 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACGAAGGTTGCGGCAGCAGGATCGACAG
CACGCAGGAGGGGATCGGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGATGGCTGAGTGCCC
GCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:13908867 original size:26 final size:26
Alignment explanation
Indices: 13908837--13908889 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13908827 GTTGACTTAG
13908837 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13908863 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13908889 G
1 G
13908890 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13909208 original size:26 final size:26
Alignment explanation
Indices: 13909179--13909231 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13909169 GTTGGCTTAG
13909179 GCATAC-GACGTTCATT-CCATGTCTAA
1 GCATACGGA-GTTCATTCCCA-GTCTAA
13909205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13909231 G
1 G
13909232 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13909625 original size:159 final size:159
Alignment explanation
Indices: 13909290--13909645 Score: 421
Period size: 159 Copynumber: 2.2 Consensus size: 159
13909280 CATTACATAG
* *
13909290 GGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCTAGCTGAGTGCCCGCACGCCC
1 GGGGATCGGGCCGATCCCCGGCTCGTGCATTCTGCCTCTCCGGCTAGCTGAGTGCCCGCACGCCC
* * * *
13909355 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTAGACGGAGGGT
66 ATTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACGGAAGGT
* *
13909420 TCTGGCAACGGGACTAGCAGCATGCAGAA
131 TCTGGCAACGGGACGAGCAGCACGCAGAA
* * * * * * **
13909449 GGGGACCGGGCCGATCCCCGGCTCGTGCATTCTGCCTTTTCTGTTGGCTGAGTGCCCGCGTGCCC
1 GGGGATCGGGCCGATCCCCGGCTCGTGCATTCTGCCTCTCCGGCTAGCTGAGTGCCCGCACGCCC
* * *
13909514 GTTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC-GAAGG
66 ATTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGA-CGGAAGG
* *
13909578 TTGTGGCAGCGGGACCGA-CAGCACGCAG-A
130 TTCTGGCAACGGGA-CGAGCAGCACGCAGAA
* * * * * *
13909607 GTGGGATCAGGCCAATCCCCGACTTGCGCATTATGCCTC
1 G-GGGATCGGGCCGATCCCCGGCTCGTGCATTCTGCCTC
13909646 GCCTGTCGGG
Statistics
Matches: 165, Mismatches: 29, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
158 2 0.01
159 160 0.97
160 3 0.02
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
GGGGATCGGGCCGATCCCCGGCTCGTGCATTCTGCCTCTCCGGCTAGCTGAGTGCCCGCACGCCC
ATTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACGGAAGGT
TCTGGCAACGGGACGAGCAGCACGCAGAA
Found at i:13910407 original size:159 final size:156
Alignment explanation
Indices: 13910054--13910431 Score: 429
Period size: 159 Copynumber: 2.4 Consensus size: 156
13910044 CTAAGAATAT
* * * *
13910054 GGAGTTCATTCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGTAAGATCGACAGCACGCA
1 GGAGTTCATTCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCA
* * * * *
13910119 AGGGCGACCAGGCCGATCCTCGACTTATGCATTATGCCTCTCCGATCGGCTGAGCGCCCACACAC
65 AGGGCGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCAATCGACTCAGCGCCCACACAC
*
13910184 CCATTTCATGGGTTAGCTTAGGCATAG
130 CCATTTCATGGGTTAGCTTAGGCATAC
* * ** * * * *
13910211 GGAGTTCATTCCATGTCGAAGCCTCAGTCGGATCGAGGGTTGTGGTAGCGGGACCGACAGTACGC
1 GGAGTTCATTCCA-GTCTAAG-ATCAACCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGC
* * * *
13910276 AGAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGTCTCTCCAA-CTGACTCAGTGCCCGA-
64 A-AGGGCGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCAATC-GACTCAGCGCCC-AC
* *
13910339 ACACTCATTTCGTGGGTT-GACTTAGGCATAC
126 ACACCCATTTCATGGGTTAG-CTTAGGCATAC
*
13910370 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGACCAACAGCA
1 GGAGTTCATT-CCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCA
13910432 GGATCGACAT
Statistics
Matches: 180, Mismatches: 33, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
157 13 0.07
158 40 0.22
159 123 0.68
160 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (156 bp):
GGAGTTCATTCCAGTCTAAGATCAACCGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAA
GGGCGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCAATCGACTCAGCGCCCACACACC
CATTTCATGGGTTAGCTTAGGCATAC
Found at i:13910748 original size:26 final size:26
Alignment explanation
Indices: 13910718--13910770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13910708 GTTGACTTAG
*
13910718 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13910744 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13910770 G
1 G
13910771 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13911642 original size:159 final size:162
Alignment explanation
Indices: 13911354--13911653 Score: 378
Period size: 159 Copynumber: 1.9 Consensus size: 162
13911344 CCCAGCTTAC
* * *
13911354 CATTCTACCTCCTACGACCTGGGCTGAGCACCCGTAACGCTCGTTTAATGGGTTGGCTTAGGCAT
1 CATTCTACCTCCTACGACC-GGACTGAGCACCCGTAACGCCCGTTTAATGGGTTGGCTTAGGCAC
* ** *
13911419 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGTAACGGATCGGCTAGCAC
65 AGGGAATTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGACAACGGACCGGCTAGCAC
13911484 GCAAAGGGGGACCGGGCCGATCCCCAACTTGTG
130 GCAAAGGGGGACCGGGCCGATCCCCAACTTGTG
* * * *
13911517 CATTCTACCT-CTCCGACC-GACTGAGCGCCCG-CACGCCCGTTTCATGGGTTGGCTTAGGCACA
1 CATTCTACCTCCTACGACCGGACTGAGCACCCGTAACGCCCGTTTAATGGGTTGGCTTAGGCACA
* * * *
13911579 GGGAATTCATTCCATGTCTAAGCCCCAG-CTGGACTGTA-GGTTGTGACAGCGGGACCGGC-AGC
66 GGGAATTCATTCCATGTCTAAGCCCCAGTC-AGACCG-AGGGTTATGACAAC-GGACCGGCTAGC
*
13911641 ACGCAGAGGGGGA
128 ACGCAAAGGGGGA
13911654 AAGCCCCAGT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
158 1 0.01
159 81 0.69
160 19 0.16
162 7 0.06
163 10 0.08
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (162 bp):
CATTCTACCTCCTACGACCGGACTGAGCACCCGTAACGCCCGTTTAATGGGTTGGCTTAGGCACA
GGGAATTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGACAACGGACCGGCTAGCACG
CAAAGGGGGACCGGGCCGATCCCCAACTTGTG
Found at i:13911684 original size:56 final size:56
Alignment explanation
Indices: 13911598--13911709 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 56
13911588 TTCCATGTCT
* *
13911598 AAGCCCCAGCTGGACTGTAGGTTGTGACAGCGGGACCGGCAGCACGCAGAGGGGGA
1 AAGCCCCAGCTGGACTGAAGGTTGTGACAGCAGGACCGGCAGCACGCAGAGGGGGA
* *
13911654 AAGCCCCAGTTGGATTGAAGGTTGTGACAGCAGGACCGGCAGCACGCAGAGGGGGA
1 AAGCCCCAGCTGGACTGAAGGTTGTGACAGCAGGACCGGCAGCACGCAGAGGGGGA
13911710 TTAGGCCGAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.25, C:0.23, G:0.40, T:0.12
Consensus pattern (56 bp):
AAGCCCCAGCTGGACTGAAGGTTGTGACAGCAGGACCGGCAGCACGCAGAGGGGGA
Found at i:13912663 original size:26 final size:26
Alignment explanation
Indices: 13912627--13912676 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13912617 GGCATAGGCA
13912627 TACGAAGTTCATT-CCATGTCTAAGCT
1 TACGAAGTTCATTCCCAT-TCTAAGCT
13912653 TACGAAGTTCATTCCCATTCTAAG
1 TACGAAGTTCATTCCCATTCTAAG
13912677 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (26 bp):
TACGAAGTTCATTCCCATTCTAAGCT
Found at i:13913051 original size:26 final size:25
Alignment explanation
Indices: 13913021--13913099 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
13913011 GTTGACTTAG
13913021 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
13913047 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACG-AGTTCATCCCCAGTCTAA
*
13913073 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
13913099 G
1 G
13913100 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 1 0.02
26 48 0.96
27 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:13913529 original size:159 final size:158
Alignment explanation
Indices: 13913073--13913819 Score: 543
Period size: 159 Copynumber: 4.7 Consensus size: 158
13913063 CCCAGTCTAA
*
13913073 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGTAGGATCGACA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGTAGGATCGACA
* * *
13913138 GCATGCA-AGGGGGACTGGGCCGATCC-CTGGCTTACGCATTCTGCCACTCCAGCCA-GCTGAGC
66 GCACGCAGA-GGGGACTGGGCCGATCCTC-GGCTTACGCATTCTGCCTCTCC-GACAGGCTGAGC
* * *
13913200 ACCCGCACGCCCATTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTC-GTTTCGTGGATTGGCTTAG
** * * * *
13913232 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCA-TCAGGACCG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGAGGCAGT-AGGATCG
* * * * * * * * *
13913294 GCAGCACGCAGAGGGGCACCGGCCCGATCCTCAGCTTGCGCATTATTCCTCTCCGACCGGCTCAG
63 ACAGCACGCAGAGGGG-ACTGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAG
** * * * * *
13913359 TGCTCACACGCTCGTTTAGTGGCTTGACTTAG
127 CACCCGCACGCTCGTTTCGTGGATTGGCTTAG
** ** * * * *
13913391 AAATAAAGAGTTCATTCCCAGTCCAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGACA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGTAGGATCGACA
* * * *
13913456 GCACGCAGGAGGGGACTGGGTCGGTCCTCGGCTTATGCATTCTGCCTCTCCGGCAGGCTGAGCAC
66 GCACGCA-GAGGGGACTGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAGCAC
13913521 CCGCACGCTCGTTTCGTGGATTGGCTTAG
130 CCGCACGCTCGTTTCGTGGATTGGCTTAG
** * * * *
13913550 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGTGGGACCCG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGAGGCAGTAGGA-TCG
* * * ** * * * * * * *
13913613 -TAGCACGCAGTGGGGGACCGAACTGATCCCCGGCTTGCGCATTATGCCT-TCCGTTC-GGTTCA
63 ACAGCACGCAG-AGGGGACTGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCG-ACAGGCTGA
* * * * * *
13913675 TG--CCTGTACGCTAGTTTCATGGGTTGACTTAG
126 -GCACCCGCACGCTCGTTTCGTGGATTGGCTTAG
* * * * * *
13913707 GCATA-CGAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTT-ACGACAGCAGCATCGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGA-GGCAGTAGGATCGAC
* * * * ** *
13913770 AGCATGCAGGGGGGACTGGGTCGATCCTCAGCTTGGGCATTCTGCTTCTC
65 AGCACGCAGAGGGGACTGGGCCGATCCTCGGCTTACGCATTCTGCCTCTC
13913820 TAACCGACTG
Statistics
Matches: 447, Mismatches: 119, Indels: 47
0.73 0.19 0.08
Matches are distributed among these distances:
155 32 0.07
156 45 0.10
157 31 0.07
158 19 0.04
159 260 0.58
160 59 0.13
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGTAGGATCGACA
GCACGCAGAGGGGACTGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAGCACC
CGCACGCTCGTTTCGTGGATTGGCTTAG
Found at i:13913657 original size:318 final size:314
Alignment explanation
Indices: 13913080--13913895 Score: 958
Period size: 318 Copynumber: 2.6 Consensus size: 314
13913070 TAAGCATACG
* *
13913080 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGTAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCATGCA
* * * *
13913145 AGGGGGACTGGGCCGATCC-CTGGCTTACGCATTCTGCCACTCCAGCCA-GCTGAGCACCCGCAC
66 GGGGGGACTGGGTCGATCCTC-GGCTTACGCATTCTGCCTCTCC-GACAGGCTGAGCACCCGCAC
* * **
13913208 GCCCATTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCG
129 GCTC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCG
* ** *
13913273 AGGGTTGTGGCATCAGGACCGGCAGCACGCAGAGGGGCACCGGCCCGATCCTCAGCTTGCGCATT
193 AGGGTTGTGGCATCAGGACCCGCAGCACGCAGAGGGGCACCGAACCGATCCCCAGCTTGCGCATT
* *
13913338 ATTCCTCTCCGACCGGCTCAGTG-CTCACACGCTCGTTT-AGTGGCTTGACTTAGAAATAAA
258 ATGCCT-TCCGACCGGCTCA-TGCCT-ACACGCTAGTTTCA-TGGCTTGACTTAGAAAT-AA
* * *
13913398 GAGTTCATTCCCAGTCCAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCATGCA
* * *
13913463 GGAGGGGACTGGGTCGGTCCTCGGCTTATGCATTCTGCCTCTCCGGCAGGCTGAGCACCCGCACG
66 GG-GGGGACTGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAGCACCCGCACG
*
13913528 CTCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAG
130 CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAG
* * * * * *
13913593 GGTTGTGGCAGT-GGGACCCGTAGCACGCAGTGGGGGACCGAACTGATCCCCGGCTTGCGCATTA
195 GGTTGTGGCA-TCAGGACCCGCAGCACGCAGAGGGGCACCGAACCGATCCCCAGCTTGCGCATTA
** * ** * ** *
13913657 TGCCTTCCGTTCGGTTCATGCCTGTACGCTAGTTTCATGGGTTGACTTAGGCATAC
259 TGCCTTCCGACCGGCTCATGCCTACACGCTAGTTTCATGGCTTGACTTAGAAATAA
* * * * *
13913713 GAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCAGCATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCATGCA
* ** * ** * * *
13913778 GGGGGGACTGGGTCGATCCTCAGCTTGGGCATTCTGCTTCTCTAACCGACTGAGCGCCCGTACGT
66 GGGGGGACTGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAGCACCCG--C--
* * * * *
13913843 ACACTCGTTTCATGGGTTGGCTTAAGCATACGAAGTTCATTCCATGTCTAAGC
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13913896 ATACGGAGTT
Statistics
Matches: 426, Mismatches: 62, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
314 47 0.11
315 60 0.14
316 26 0.06
317 13 0.03
318 225 0.53
319 54 0.13
320 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (314 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCATGCA
GGGGGGACTGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
GTTGTGGCATCAGGACCCGCAGCACGCAGAGGGGCACCGAACCGATCCCCAGCTTGCGCATTATG
CCTTCCGACCGGCTCATGCCTACACGCTAGTTTCATGGCTTGACTTAGAAATAA
Found at i:13913895 original size:26 final size:26
Alignment explanation
Indices: 13913865--13913920 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
13913855 TGGGTTGGCT
13913865 TAAGCATACGAAGTTCATT-CCATGTC
1 TAAGCATACGAAGTTCATTCCCA-GTC
*
13913891 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
13913917 TAAG
1 TAAG
13913921 ATAAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:13914284 original size:26 final size:26
Alignment explanation
Indices: 13914248--13914300 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13914238 GTTGACTTAG
*
13914248 GCATATGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
13914274 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13914300 G
1 G
13914301 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13915845 original size:159 final size:158
Alignment explanation
Indices: 13915715--13916004 Score: 354
Period size: 158 Copynumber: 1.8 Consensus size: 158
13915705 GTTGTGGCAG
* * * *
13915715 CAAGATCGGCAGCATGCAGAGGGGGACCGGGTCGATCCTCGGCTTACGCATTATGCCTTTTCGAC
1 CAAGATCGACAGCATGCAG-GGGGGACCAGGTCGATCCTCGGCTTACGCATTATGCCTCTCCGAC
* * * *
13915780 CGGCTCAA-CGTCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-AT
65 CGACT-AAGC-ACCTGCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATAT
13915842 CTAAGATCGGACCAGACCGAGCGTTACGACAA
128 CTAAGA-CGGACCAGACCGAGCGTTACGACAA
* * * * * *
13915874 CAGGATCGATAGCATGCAGGGGGGACCAGGTCGATCCTCGGCTTATGCGTTCTGCCTCTCCGACT
1 CAAGATCGACAGCATGCAGGGGGGACCAGGTCGATCCTCGGCTTACGCATTATGCCTCTCCGACC
* * * *
13915939 GACTAAGCACCTGCATGCTAGTTTCGTGGGTTGGCTTAGTCATACAGAGTTCATT-CCATGTCTA
66 GACTAAGCACCTGCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTA
13916003 AG
131 AG
13916005 CATACAGAGT
Statistics
Matches: 110, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
157 7 0.06
158 87 0.79
159 16 0.15
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CAAGATCGACAGCATGCAGGGGGGACCAGGTCGATCCTCGGCTTACGCATTATGCCTCTCCGACC
GACTAAGCACCTGCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTA
AGACGGACCAGACCGAGCGTTACGACAA
Found at i:13916008 original size:26 final size:26
Alignment explanation
Indices: 13915979--13916030 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13915969 TTGGCTTAGT
13915979 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
13916005 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
13916031 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:13916380 original size:26 final size:26
Alignment explanation
Indices: 13916350--13916402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13916340 GTTGATTTAG
*
13916350 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
13916376 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13916402 G
1 G
13916403 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13916578 original size:26 final size:26
Alignment explanation
Indices: 13916549--13916598 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13916539 GGCTTAGGCA
13916549 TACGGAGCTCATT-CCATGTCTAAGCT
1 TACGGAGCTCATTCCCA-GTCTAAGCT
*
13916575 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
13916599 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCT
Found at i:13916700 original size:11 final size:11
Alignment explanation
Indices: 13916668--13916693 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13916658 CCTAGGGCAC
13916668 CATCACCGGAG
1 CATCACCGGAG
13916679 CATCACCGGAG
1 CATCACCGGAG
13916690 CATC
1 CATC
13916694 GTCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:13923388 original size:26 final size:27
Alignment explanation
Indices: 13923347--13923397 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
13923337 CGTGGGTTGA
*
13923347 CTTAGGCATACGGAGTTCATCCCCAAT
1 CTTAGGCATACAGAGTTCATCCCCAAT
*
13923374 CTTA-GCATACAGAGTTCATTCCCA
1 CTTAGGCATACAGAGTTCATCCCCA
13923398 GTCTAAGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATCCCCAAT
Found at i:13923961 original size:317 final size:316
Alignment explanation
Indices: 13923374--13924196 Score: 1118
Period size: 317 Copynumber: 2.6 Consensus size: 316
13923364 CATCCCCAAT
* * * * * *
13923374 CTTA-GCATACAGAGTTCATTCCCAGTCTAAGA-TCGAACCGAACCGAGGGTTACGGCAACAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACAG-ACAGAGGGTTGCGGCAGCAGGA
* * * *
13923437 TCGGCAGCACGCAGGGGGGACC-GGCCGAT-CCTCAGCTTGCGCATTCTGCCTCTCCGATCGGCT
64 TCGACAGCACGCAGGGGGGACCGGGCTGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGCT
*
13923500 GAGCGCCCGTACGCCTATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCC
128 GAGCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCC
* * * * * *
13923565 CAGCTGGACTAAGGGTTGTGGCAGCGGGATTTGCAGCACGCATAGGGGGATCGGGCCGATCTCCG
193 CAGCTGGACCAAGGGTTGTGGCAGCGGGATCTGCAGCACGCAGAGGGGGACCGGGCCAATCTCAG
* **
13923630 ATTTGTGCATTACGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGA
258 ATTTGTGAATTACGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGA
*
13923689 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACTAGACAGAGGGTTGCGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAC-AGACAGAGGGTTGCGGCAGCAGGAT
*
13923754 CGACAGCACGCAGGAGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
65 CGACAGCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
13923819 GCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCA
130 GCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCA
* * * * *
13923884 GTTGGACCGAGGGTTGTGGTAGCGGGATCTGCAGCACGTAGAGGGGGACCGGGTCAATCCTCAG-
195 GCTGGACCAAGGGTTGTGGCAGCGGGATCTGCAGCACGCAGAGGGGGACCGGGCCAAT-CTCAGA
*
13923948 TTTGTGAATTACGCCTCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGA
259 TTTGTGAATTACGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGA
** * * * *
13924006 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATAGAAGGTTGCGGTAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CAGACAGAGGGTTGCGGCAGCAGGAT
* * * * * *
13924071 CGATAGCATGCAGGGGGGACTGGG-TCAGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTG
65 CGACAGCACGCAGGGGGGACCGGGCTGA-TCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTG
* * * * * * *
13924135 AGAGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCACATGGAGTTCATTCCATGTTTAAGC
129 AGCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
13924197 ATACGGAGTT
Statistics
Matches: 451, Mismatches: 49, Indels: 14
0.88 0.10 0.03
Matches are distributed among these distances:
315 4 0.01
316 69 0.15
317 370 0.82
318 8 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (316 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGACAGAGGGTTGCGGCAGCAGGATC
GACAGCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
CGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAG
CTGGACCAAGGGTTGTGGCAGCGGGATCTGCAGCACGCAGAGGGGGACCGGGCCAATCTCAGATT
TGTGAATTACGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGA
Found at i:13924035 original size:159 final size:158
Alignment explanation
Indices: 13923374--13924195 Score: 755
Period size: 159 Copynumber: 5.2 Consensus size: 158
13923364 CATCCCCAAT
* * * * * * *
13923374 CTTA-GCATACAGAGTTCATTCCCA-GTCTAAGATC-GAACCGAACCGAGGGTTACGGCAACAGG
1 CTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAG-ACTGGACAGAGGGTTGCGGCAGCAGG
*
13923436 ATCGGCAGCACGCAGGGGGGACC-GGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGATCGGCT
65 ATC-GCAGCACGCAGGGGGGACCGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCT
* *
13923500 GAGCGCCCGTACGC-CTATTTCATGGGTTGG
129 GAGCGCCCGCACGCTC-GTTTCATGGGTTGG
* * * *
13923530 CTTAGGCATACGGAGTTCATT-TCATGTCTAAGCCCCAG-CTGGACTA-AGGGTTGTGGCAGCGG
1 CTTAGGCATACGGAGTTCATTCCCATGTCTAAG-ACCAGACTGGAC-AGAGGGTTGCGGCAGCAG
* * * * * *
13923592 GATTTGCAGCACGCATAGGGGGATCGGGCCGAT-CTCCGATTTGTGCATTAC-GCCTCTCCGGTC
64 GA-TCGCAGCACGCA-GGGGGGACCGGGCCGATCCTCAG-CTTGCGCATT-CTGCCTCTCCGGTC
* ** *
13923655 GGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGA
125 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* ** *
13923689 CTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATTAGACTAGACAGAGGGTTGCGGCAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAGACTGGACAGAGGGTTGCGGCAGCAGGA
* * *
13923753 TCGACAGCACGCAGGAGGGACCGGGCTGATCC-CTGGCTTGCGCATTCTGCCTCTCCGGTCGGCT
66 TCG-CAGCACGCAGGGGGGACCGGGCCGATCCTC-AGCTTGCGCATTCTGCCTCTCCGGTCGGCT
*
13923817 GAGCGCCCGTACGC-CTGTTTCATGGGTTGG
129 GAGCGCCCGCACGCTC-GTTTCATGGGTTGG
* * * * * * *
13923847 CTTAGGCATACGGAGTTCATT-TCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGTAGCGGG
1 CTTAGGCATACGGAGTTCATTCCCATGTCTAAG-ACCAGACTGGACAGAGGGTTGCGGCAGCAGG
* * * * * * *
13923910 ATCTGCAGCACGTAGAGGGGGACCGGGTCAATCCTCAGTTTGTGAATTAC-GCCTCTCTGGTCGG
65 ATC-GCAGCACGCAG-GGGGGACCGGGCCGATCCTCAGCTTGCGCATT-CTGCCTCTCCGGTCGG
* *
13923974 CTCAGCGCCCGCACGCTCGTTTCATGGGTTGA
127 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * * * * *
13924006 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGATAGAAGGTTGCGGTAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAGACTGGACAGAGGGTTGCGGCAGCAGGA
* * * * * * *
13924070 TCGATAGCATGCAGGGGGGACTGGGTC-AGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCT
66 TCG-CAGCACGCAGGGGGGACCGGGCCGA-TCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCT
* *
13924134 GAGAGCCCGCACGCTTGTTTCATGGGTTGG
129 GAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * *
13924164 CTTAGGCACATGGAGTTCATT-CCATGTTTAAG
1 CTTAGGCATACGGAGTTCATTCCCATGTCTAAG
13924196 CATACGGAGT
Statistics
Matches: 538, Mismatches: 96, Indels: 62
0.77 0.14 0.09
Matches are distributed among these distances:
156 6 0.01
157 59 0.11
158 231 0.43
159 233 0.43
160 9 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
CTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAGACTGGACAGAGGGTTGCGGCAGCAGGA
TCGCAGCACGCAGGGGGGACCGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGG
Found at i:13924566 original size:26 final size:26
Alignment explanation
Indices: 13924537--13924589 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13924527 GTTGACATAG
13924537 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13924563 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13924589 G
1 G
13924590 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13925210 original size:158 final size:157
Alignment explanation
Indices: 13924986--13925402 Score: 428
Period size: 158 Copynumber: 2.6 Consensus size: 157
13924976 GGCGGGCCGA
* * * * * * *
13924986 GCCGATCTCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCGTTTTCTGG
1 GCCGATCCCCAGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGAACGCTCG-TTTATGG
* * * *
13925051 GTTGGCGTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAG-CCGGACCGAGGGTTGTGGCAGT
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACACCAGACCGAACCGAGGGTTGTGGCAGT
* * * *
13925115 GGGACCGATAACACGTAGAGG-GGGATCAG
130 AGGACCGACAACA--TACAGGAGGGACCAG
* * * * *
13925144 GCCGATCCCC-GACTTACGCATTATGCCTCTTCGATCGGCTCAGCGCCTGCACACTCGCTTTATG
1 GCCGATCCCCAG-CTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGAACGCTCG-TTTATG
* * * * * *
13925208 GGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGAACTGAGGGTTGTGGCA
64 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAACACCAGACCGAACCGAGGGTTGTGGCA
* *
13925272 GTAGGATCGACAGCATACAGGAGGGACCAG
128 GTAGGACCGACAACATACAGGAGGGACCAG
* * * * * * *
13925302 GCTGATCCCCAGCTTGCGCGTTCTGCCTCTTCGACCGGCTGAGCACCCGAACGCTCGTTTCGTGC
1 GCCGATCCCCAGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGAACGCTCGTTT-ATGG
13925367 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13925403 GCATATGGAG
Statistics
Matches: 209, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 12 0.06
158 164 0.78
159 33 0.16
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (157 bp):
GCCGATCCCCAGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGAACGCTCGTTTATGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACACCAGACCGAACCGAGGGTTGTGGCAGTA
GGACCGACAACATACAGGAGGGACCAG
Found at i:13925413 original size:26 final size:26
Alignment explanation
Indices: 13925377--13925429 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13925367 GTTGGCTTAG
13925377 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13925403 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13925429 G
1 G
13925430 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13926121 original size:26 final size:26
Alignment explanation
Indices: 13926082--13926135 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13926072 TGGGTTGACT
13926082 TAGGCATACAGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
* *
13926108 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
13926134 TA
1 TA
13926136 AGATCGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:13926494 original size:159 final size:155
Alignment explanation
Indices: 13926108--13926603 Score: 462
Period size: 159 Copynumber: 3.1 Consensus size: 155
13926098 ATCCCCAGTC
* * *
13926108 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGT-TGGATAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTACGG-TAGCAGGATC-
* * * * * *
13926172 GTAGTACGCAGGGTGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGC
64 GCAGCACGTAGGG-GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
*
13926237 GCCCGTACGC-CTGTTTCATGGGTTGGCT
128 GCCCGCACGCTC-GTTTCATGGGTTGGCT
* * ** * * *
13926265 TAGGCATACGAAGTTCATT-TCATGTCTAAGCCCCAGCT-GGATCGAGGGTTACGGCAGC-GAGA
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGG-TACGGTAGCAG-GA
* * * * *
13926327 TCTGCAGCACGTAGAAAGGGACCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTCCGGTCGGCT
62 TC-GCAGCACGTAG--GGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * * * *
13926392 CAACGCCCGCACGCTCATTTCGTGGGTTGACT
124 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCT
*
13926424 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTCACGGTAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGT-ACGGTAGCAGGATCG
* * * * ** *** *
13926489 ACAGCACATAGGGGGGGATCGGGTCGTTCCCCAGCTTGCGCATTCTATCTCTTTAATTGGCTGAG
65 -CAGCACGTA--GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
*
13926554 CGCCCGCACGCTTGTTTCATGGGTTGGCT
127 CGCCCGCACGCTCGTTTCATGGGTTGGCT
*
13926583 TAGGCACACGGAGTTCATTCC
1 TAGGCATACGGAGTTCATTCC
13926604 ATGTTTAAGC
Statistics
Matches: 266, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 34 0.13
158 25 0.09
159 199 0.75
160 5 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTACGGTAGCAGGATCGC
AGCACGTAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCT
Found at i:13926973 original size:26 final size:26
Alignment explanation
Indices: 13926944--13926994 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13926934 TGACTTAGGC
13926944 ATACGAAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
*
13926970 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
13926995 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:13927320 original size:26 final size:26
Alignment explanation
Indices: 13927283--13927335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13927273 GTTGACTTAG
13927283 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13927309 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
13927335 G
1 G
13927336 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13927354 original size:341 final size:342
Alignment explanation
Indices: 13926911--13927652 Score: 949
Period size: 343 Copynumber: 2.2 Consensus size: 342
13926901 TCTGTTGAAC
* *
13926911 GCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGTATACGA
1 GCCCGTACGCTTGTTTTGTGGGTTGACTTAGGCATACG-AGTTCATCCCCAGTCTAAGCATACGA
* * * *
13926976 AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGCAGCAGGATC-ACAGCATGTAG
65 AGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACG-AA
** ** *** * * *
13927040 AGG-GG-CCGGGTTGATCCTTGGCTTACGCATTCTGCCTCTTCGACCGACTGAGCGCTCGCACGC
129 AGGCGGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACAC
* *
13927103 CC-GTTTCATTGGTTGGCGTAGGCATAGGGAGTTCATTCCATTTCTAAGCCCCAGCCGAA-TCGA
194 CCAGTTTC-TGGGTTGGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACT-GA
* * * * *
13927166 GGGTTGTGATAGCGGGATC-GGTAGCATGCAGAGGGGGATCGGGTCGATCCTCGACTTACGCATT
257 GGGTTGTGACAGCGGGA-CAGGCAGCACGCAGAGCGGGATCAGGTCGATCCTCGACTTACGCATT
13927230 ATGCCTCTTC-GATCGGCTCAAT
321 ATGCCTCTTCAG-TCGGCTCAAT
* *
13927252 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGA
1 GCCCGTACGCTTGTTTTGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGA
* ** * **
13927317 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGTAGGATCGGTAGCACGAAA
65 AGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGAAA
* **
13927382 GGCGGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACACC
130 GGCGGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACC
* * *
13927447 CATTTTCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGG
195 CAGTTTCTGGGTTGGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGG
* * * **
13927512 TTGTGGCAGCGGGACAGGCAGCACGTAGAGCGGGATCAGGTCGATCCTCGGCTTGTGCATTATGC
260 TTGTGACAGCGGGACAGGCAGCACGCAGAGCGGGATCAGGTCGATCCTCGACTTACGCATTATGC
*
13927577 CTCTTCAGTCGGCTCAGT
325 CTCTTCAGTCGGCTCAAT
* * *
13927595 GCCCGTACGCTTGTTTTATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 GCCCGTACGCTTGTTTTGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAG
13927653 ATCGGACCAA
Statistics
Matches: 344, Mismatches: 49, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
341 110 0.32
342 9 0.03
343 219 0.64
344 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (342 bp):
GCCCGTACGCTTGTTTTGTGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACGAA
GTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGAAAG
GCGGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACCC
AGTTTCTGGGTTGGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGT
TGTGACAGCGGGACAGGCAGCACGCAGAGCGGGATCAGGTCGATCCTCGACTTACGCATTATGCC
TCTTCAGTCGGCTCAAT
Found at i:13927819 original size:26 final size:26
Alignment explanation
Indices: 13927783--13927835 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13927773 GTTGGCTTAG
13927783 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13927809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13927835 G
1 G
13927836 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13928561 original size:12 final size:12
Alignment explanation
Indices: 13928544--13928574 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
13928534 CGAGGGTTGT
13928544 GGCAGCAGGATC
1 GGCAGCAGGATC
13928556 GGCAGCAGGATC
1 GGCAGCAGGATC
*
13928568 GGTAGCA
1 GGCAGCA
13928575 CGCTGAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.23, G:0.42, T:0.10
Consensus pattern (12 bp):
GGCAGCAGGATC
Found at i:13928696 original size:26 final size:26
Alignment explanation
Indices: 13928666--13928718 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13928656 GTTGACTTAG
*
13928666 GCATACGGAGTTCA-TCCCAGGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13928692 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13928718 G
1 G
13928719 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13929042 original size:159 final size:159
Alignment explanation
Indices: 13928819--13929181 Score: 446
Period size: 159 Copynumber: 2.3 Consensus size: 159
13928809 CCGCACGCCC
*
13928819 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCGGACCGAGGGT
1 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
* * * * * * * * * *
13928884 TGTGGTAGTGGGATCGACCGCACTCAGAGGGGGATCGAGTCGAT-CCTCGGCTTGTGCATTCTAC
66 TGTGGCAGCGGGACCGACAGCACGCAGA-GAGGACCGAGCCGATCCCT-GGCTTATGCATTATAC
* **
13928948 CTCTCTGGCTAGCTGAGCGCTTGCACAC-CT
129 CTCTCTGGCTAGCTCAGCGCCCGCACACTCT
* *
13928978 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGT
1 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
* * *
13929043 TGTGGCAGCGGGACCGACAGCACGCCGAGAGGACCGGGCCGATCCCTGGCTTATGCATTATGCCT
66 TGTGGCAGCGGGACCGACAGCACGCAGAGAGGACCGAGCCGATCCCTGGCTTATGCATTATACCT
* * * *
13929108 TTCTGGTTGGCTCAGCGCCCGCACGCTCT
131 CTCTGGCTAGCTCAGCGCCCGCACACTCT
* *
13929137 -TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
1 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
13929182 ATCAGACCAG
Statistics
Matches: 175, Mismatches: 26, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
158 83 0.47
159 92 0.53
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.26
Consensus pattern (159 bp):
ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
TGTGGCAGCGGGACCGACAGCACGCAGAGAGGACCGAGCCGATCCCTGGCTTATGCATTATACCT
CTCTGGCTAGCTCAGCGCCCGCACACTCT
Found at i:13929180 original size:158 final size:158
Alignment explanation
Indices: 13928809--13929391 Score: 447
Period size: 158 Copynumber: 3.6 Consensus size: 158
13928799 GGTTGAGCTT
* *
13928809 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCG
1 CCGCACG-CCTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * * * * *
13928874 GACCGAGGGTTGTGGTAGTGGGATCGACCGCACTCAGAGGGGGATCGAGTCGATCCTCGGCTTGT
65 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGAGGACCGAGCCGATCCTCGGCTTAT
* *
13928939 GCATTCTACCTCTCTGGCTAGCTGAGCGC
130 GCATTATACCTCTCTGGCTAGCTCAGCGC
** * *
13928968 TTGCACACCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
1 CCGCACGCCT-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * *
13929033 GATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCCGA-GAGGACCGGGCCGATCC-CTGGCTTA
65 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGAGGACCGAGCCGATCCTC-GGCTTA
* * * *
13929096 TGCATTATGCCTTTCTGGTTGGCTCAGCGC
129 TGCATTATACCTCTCTGGCTAGCTCAGCGC
* * **
13929126 CCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
1 CCGCACGC-CTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-C
* ** * * * * * *
13929189 CAGACCGAGGGTTGCAGCAGCAGGTCCAGCAGCAGGATCGGCAGTACGTAGGGGGGACCGGGTCG
63 CGGACCGAGGGTTGTGGCAGCGGGACC-G-A-CAGCA-C-GC---A-G-A-GGAGGACCGAGCCG
** * * * * ** *
13929254 ATCCTCGGCTTGCGCATTCTACCTCT-TCGATCGACTGTGCAC
117 ATCCTCGGCTTATGCATTATACCTCTCTGGCTAG-CTCAGCGC
** * * * * * * *
13929296 ATGTACACTCTTTTCATGGGTTGGCTTAGGCAAATGGAGTTCGTTCCATGTCTAAGCCCCAGTCG
1 CCGCACGC-CTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* *
13929361 GACCGAGGGTTGTGGCAGCAGGACCGGCAGC
65 GACCGAGGGTTGTGGCAGCGGGACCGACAGC
13929392 GGGATCGGTA
Statistics
Matches: 332, Mismatches: 71, Indels: 34
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.01
158 109 0.33
159 93 0.28
160 1 0.00
161 4 0.01
162 1 0.00
163 2 0.01
167 4 0.01
168 1 0.00
169 8 0.02
170 101 0.30
171 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CCGCACGCCTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGAGGACCGAGCCGATCCTCGGCTTATG
CATTATACCTCTCTGGCTAGCTCAGCGC
Found at i:13929526 original size:26 final size:26
Alignment explanation
Indices: 13929497--13929547 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13929487 TTGACTTAGG
13929497 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
13929523 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
13929548 GATCAAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:13936993 original size:157 final size:158
Alignment explanation
Indices: 13936621--13936994 Score: 423
Period size: 159 Copynumber: 2.4 Consensus size: 158
13936611 CTGGCTCAGA
* *
13936621 GCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACAC
1 GCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACAC
* ** * *
13936686 AGGACCGAGGGTTGTGGTAGTGGGACCGACAGCACGCAAAAGGGGATCGAGCTGATCCTCGGCTT
66 AGGACCGAGGGTTGCGGTAGCAGGACCGACAGCAC-CAAAAGGGGACCAAGCTGATCCTCGGCTT
*
13936751 ACGCATTATGCCTCTCCGATCAGCTCAAC
130 ACGCAATATGCCTCTCCGATCAGCTCAAC
* * * * *
13936780 ACTCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGAC
1 GCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACAC
* ** * * *
13936845 TGGACCGAGGGTTGCGGTAGCAGGATTGATAGCA-C-ACAGGGGACCAAG-TCGGTCCTCGGCTT
66 AGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACCAAAAGGGGACCAAGCT-GATCCTCGGCTT
* * * * ***
13936907 ACGCAATCTGCCTCTCCGGTCGGTTGGGC
130 ACGCAATATGCCTCTCCGATCAGCTCAAC
* * *
13936936 GCCCGTACGCTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 GCCCGAACGC-TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
13936995 TATACAGAGT
Statistics
Matches: 179, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
155 1 0.01
156 52 0.29
157 41 0.23
159 85 0.47
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
GCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACAC
AGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACCAAAAGGGGACCAAGCTGATCCTCGGCTTA
CGCAATATGCCTCTCCGATCAGCTCAAC
Found at i:13937006 original size:26 final size:26
Alignment explanation
Indices: 13936970--13937019 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13936960 TGGCTTAGGC
*
13936970 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
13936996 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAGTCTAA
13937020 AATCAGACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:13938267 original size:26 final size:26
Alignment explanation
Indices: 13938231--13938283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13938221 GTTGACTTAG
13938231 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13938257 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13938283 G
1 G
13938284 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13938558 original size:159 final size:157
Alignment explanation
Indices: 13938296--13938758 Score: 428
Period size: 159 Copynumber: 2.9 Consensus size: 157
13938286 CGGACAGGAT
* ** * * * * * * * * *
13938296 CGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGTGGGGACCGAGTCGATCTCCGGCTTACGCAT
1 CGAGGGTTGCGGCAG-AGGACCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCAT
* * * *
13938361 TCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
65 TATGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
*
13938426 TCATTCCATGTCTAAGCCCCAGCCGAAC
130 TCATTCCATGTCTAAGCCCCAACCGAAC
* * ** *
13938454 CGAGGGTTGTGGCTACG-GGACCGGCAGCACGCAGAGGGGGATCGGGTTGATCCCCGACTTGTGC
1 CGAGGGTTGCGGC-A-GAGGACCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTATGC
* * * *
13938518 ATTATGCCTCTCCGGCCGACTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGA
63 ATTATGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* * ** * * * *
13938583 GTTCATCCCCA-ATCTAAGATCGAACTGGAT
128 GTTCAT-TCCATGTCTAAGCCCCAACCGAAC
* * * *
13938613 CGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGGATCGGGCCGGTCCCTGACTTATGCAT
1 CGAGGGTTGCGGCAG-AGGACCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCAT
* * ** * * * * *
13938678 TTTGTCTCT-CGGTAGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTCATGCATACGGAGT
65 TATGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
13938742 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
13938759 ATACGGAGTT
Statistics
Matches: 244, Mismatches: 54, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 56 0.23
158 59 0.24
159 122 0.50
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (157 bp):
CGAGGGTTGCGGCAGAGGACCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTATGCATT
ATGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAACCGAAC
Found at i:13939496 original size:158 final size:156
Alignment explanation
Indices: 13939123--13939500 Score: 364
Period size: 158 Copynumber: 2.4 Consensus size: 156
13939113 AAGCATACAA
* * * * ** *
13939123 AGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCAATAGCAGGATCGATGGCACGCAG
1 AGTTCATT-CCAGTCTAAGATCGACT-GGACCGAGGGTTGCGACAACAGGATCGACAGCATGCAG
** * * * * *
13939188 AAAGGATCGGGCCGATCCCCGACTTGTGCATTTTGCCTCTCTGGTCGGCTGAGCGCCCGTATGCC
64 AAAGGATCGAACCGATCCCCGACTTGTGCATTATGCCTCTCTGGTCGGCTCAGCGACCGAACGCC
* * *
13939253 CATTTCGTGGGTTGGCTTAGGCATAGGG
129 CATTTCATGGGTTGACTTAGGCATACGG
** * * * *** * *
13939281 AGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCATTGGGATTGACAGCATGCTG
1 AGTTCATTCCA-GTCTAAGATCGA-CTGGACCGAGGGTTGCGACAACAGGATCGACAGCATGCAG
* * * * * *
13939346 AAGGGATTGAACCGATCCTCGACTTGTGCATTATGCCTCTCTGG-CTTGCTCAGTGATCGAACG-
64 AAAGGATCGAACCGATCCCCGACTTGTGCATTATGCCTCTCTGGTC-GGCTCAGCGACCGAACGC
*
13939409 CTAGTTTCATGGGTTGACTTAGGCATACGG
128 CCA-TTTCATGGGTTGACTTAGGCATACGG
13939439 AGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAACAGGATCGACAGCATG
1 AGTTCATTCC-AGTCTAAGATC-GACTGGACCGAGGGTTGCGACAACAGGATCGACAGCATG
13939501 TAGGGGGGAC
Statistics
Matches: 172, Mismatches: 42, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.03
158 163 0.95
159 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (156 bp):
AGTTCATTCCAGTCTAAGATCGACTGGACCGAGGGTTGCGACAACAGGATCGACAGCATGCAGAA
AGGATCGAACCGATCCCCGACTTGTGCATTATGCCTCTCTGGTCGGCTCAGCGACCGAACGCCCA
TTTCATGGGTTGACTTAGGCATACGG
Found at i:13939625 original size:26 final size:26
Alignment explanation
Indices: 13939589--13939641 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13939579 GTTGAATTAG
13939589 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13939615 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13939641 G
1 G
13939642 ATCGGGCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13940832 original size:184 final size:184
Alignment explanation
Indices: 13940507--13941046 Score: 548
Period size: 184 Copynumber: 2.9 Consensus size: 184
13940497 GTTGACTTAG
* * * * * **
13940507 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGGTA
** * ** * * *
13940572 GCACGTAGGGGGGACCGGGCTAGTCCTCGGCTTGTGCATTCTGCCTTTCCGACCGGCTGAGCACC
66 GCACACAGGGGGGACCGGGCGAGTCCTCAACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACC
* * *
13940637 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTGA
131 CCCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAA
* * * *
13940691 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGGTA
* * *** *
13940756 GCACACAGTGGGGACCAGGTCGA-TCCTCAACTTGCGCATTCTGCCTCTCCGGTTGGCTAAGCGC
66 GCACACAGGGGGGACC-GGGCGAGTCCTCAACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCAC
* * *
13940820 CCCCATGCTCGTTTTATGGGTTGGTTTAGGCATACGGAGTTCATCCCCAGTCTAA
130 CCCCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
13940875 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGTCTGAGGGTTATGGTAGCAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGGTA
** * * * * * * * *
13940940 GCATGCAGGGGGGATCGGGCTGA-TCCCCAGCTTGCGCATTCTACCT-TTCGACCGGTTGAGCGC
66 GCACACAGGGGGGACCGGGC-GAGTCCTCAACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCAC
** * * ** * *
13941003 CTGCACACCCGTTTTGTGCGTTGGCTTAGGCATAGGGAGTTCAT
130 CCCCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
13941047 TCCTTGTCTA
Statistics
Matches: 291, Mismatches: 62, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
183 49 0.17
184 235 0.81
185 7 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGGTA
GCACACAGGGGGGACCGGGCGAGTCCTCAACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACC
CCCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:13940885 original size:26 final size:26
Alignment explanation
Indices: 13940849--13940901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13940839 GTTGGTTTAG
*
13940849 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
13940875 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13940901 G
1 G
13940902 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13941164 original size:26 final size:26
Alignment explanation
Indices: 13941128--13941179 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13941118 GAGGCTTCGA
13941128 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
13941154 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
13941180 ACCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:13942388 original size:26 final size:26
Alignment explanation
Indices: 13942352--13942404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13942342 GTTGACTTAG
13942352 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13942378 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13942404 G
1 G
13942405 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13942686 original size:159 final size:155
Alignment explanation
Indices: 13942414--13942882 Score: 478
Period size: 159 Copynumber: 3.0 Consensus size: 155
13942404 GATTGGATCG
* * * *
13942414 GACCGAGGGTTGCAGCAGCAGGATCGGTAGCATGCAG-GGGGGACCAGGTCGATCCCTAGCTTGC
1 GACCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTGC
** * * * * * * *
13942478 GCATTCCACCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATAGG
66 GCATTCTGCCTCTCAGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
* *
13942543 GAGCTCATTCCATGTCTAAGCCCCAA
131 GAGTTCATTCCATGTCTAAGCACC-A
* * * * *
13942569 TCGAATCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGATCGGGCCGATCCCC-GAC
1 --G-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCGGGCCGATCCCCAG-C
* * * * *
13942633 TTGCGCATTATGCCTCTCAGGCCGGCTCAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCA
62 TTGCGCATTCTGCCTCTCAGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCA
* * * *
13942698 TACAGAGTTCATTCCCATTTCGAGATTGGACCA
127 TACGGAGTTCATT-CCATGTCTA-A--GCACCA
* * ** * *
13942731 GACCGAGGGTTACGACAGCAGGATCGACAGCATACACGA-GAGGACCGGGCCGATCCCCAGCTTG
1 GACCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCA-GAGGGGGACCGGGCCGATCCCCAGCTTG
* *
13942795 CGCATTCTGCCTCTCCA-ACCGACTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
65 CGCATTCTGCCTCT-CAGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
13942859 CGGAGTTCATTCCATGTCTAAGCA
129 CGGAGTTCATTCCATGTCTAAGCA
13942883 TACGGAGTTC
Statistics
Matches: 251, Mismatches: 51, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
155 2 0.01
157 2 0.01
158 39 0.16
159 190 0.76
160 13 0.05
161 1 0.00
162 1 0.00
163 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (155 bp):
GACCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTGC
GCATTCTGCCTCTCAGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCACCA
Found at i:13942884 original size:26 final size:26
Alignment explanation
Indices: 13942854--13942906 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13942844 GTTGGCTTAG
13942854 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13942880 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13942906 G
1 G
13942907 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13943265 original size:26 final size:26
Alignment explanation
Indices: 13943235--13943286 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13943225 TTGACTTAGA
*
13943235 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
13943261 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
13943287 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:13943373 original size:184 final size:183
Alignment explanation
Indices: 13943183--13943653 Score: 531
Period size: 184 Copynumber: 2.6 Consensus size: 183
13943173 TCTCCAGTCG
* * * * * *
13943183 GCCTCTCCGGTCGGCTGAATGCCCGCACGCCCATTTCATGGGTTGACTTAGACATACGGAGTTCA
1 GCCTCTCCGG-CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
**
13943248 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGA-TCGGA-CTGAGGGTTGCG
65 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCTA-ACT-GGATC-GAGGGTCACG
* ** * **
13943310 ACAACAGTATCGGTAGCACGCAGGGGGGACCGAGCCGATCCTCAG-CTTGTGCATTAT
127 ACAACAGGATCGACAGCACGCAGGGGGGACCGAGCAGATCC-CAGACTTGCACATTAT
* * *
13943367 GCCTCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTCGGCTTAGGTATACGGAGTTCA
1 GCCTCTCCGGC-GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * *
13943432 TCCCCAGTCTAAGCATA-TGAAGTTCATTCACAGTCTAAGATCTAACTGGATCGAGGGTCACGGC
65 TCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCTAACTGGATCGAGGGTCACGAC
* * * * * *
13943496 AGCAGGATCGACAGCACGCAGGGGTGATCGGGCAGATCCCTGACTTGCACATTCT
129 AACAGGATCGACAGCACGCAGGGGGGACCGAGCAGATCCCAGACTTGCACATTAT
* * * * *
13943551 GCCTCTCCGACCGTCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGGGTTCA
1 GCCTCTCCG-GCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
*
13943616 T-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
65 TCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAA
13943654 AATTTTGAGC
Statistics
Matches: 241, Mismatches: 37, Indels: 18
0.81 0.12 0.06
Matches are distributed among these distances:
183 7 0.03
184 229 0.95
185 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (183 bp):
GCCTCTCCGGCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCTAACTGGATCGAGGGTCACGACAA
CAGGATCGACAGCACGCAGGGGGGACCGAGCAGATCCCAGACTTGCACATTAT
Found at i:13943640 original size:26 final size:26
Alignment explanation
Indices: 13943602--13943653 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13943592 GTTGGCTTAG
* *
13943602 GCATACGGGGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13943628 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13943654 AATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13944354 original size:26 final size:26
Alignment explanation
Indices: 13944324--13944376 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13944314 GTTGACTTAG
*
13944324 GCATATGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* *
13944350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
13944376 G
1 G
13944377 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:13945786 original size:184 final size:189
Alignment explanation
Indices: 13945533--13945953 Score: 521
Period size: 196 Copynumber: 2.2 Consensus size: 189
13945523 GCTCGTTTTG
* * * *
13945533 TGGGTTGGCTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATATGAAGGTCATTCCCAGTTGAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGAAGGTCATTCCCAGTTGAA
* *
13945598 GATCAGACTGAACCGA-G-GGT-T-A-CAACAGTAAGATCGGCAGCACGTAAGGGGGACCGGGCT
66 GATCAGACTGAACCGAGGTGGTATGACCAACAGTAAGATCGACAGCACGTAAGGGGGACCGGGCC
* * * *
13945658 GATCCCCAGCTTTTGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCATTTCA
131 GATCCCCAGCTTATGCATTCTACCTCTCCGACCGGCTGAGCAACCGCACGCTCATTTCA
* * *
13945717 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCCAAGCATACGGAGTTCATTCCCAGTCT-A
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGAAGGTCATTCCCAGT-TGA
* * * * * *
13945781 AGATCAGATTGGATCGAGGGTTATGGTAGTAGGACCAGCAGTAAGATCGATAGCACGTAGGGGGG
65 AGATCAGACTGAACCGA-GG---TGGTA-T--GACCAACAGTAAGATCGACAGCACGTAAGGGGG
* *
13945846 ATCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCGACCGGCTGAGCAACCGCACGCTCATTT
123 ACCGGGCCGATCCCCAGCTTATGCATTCTACCTCTCCGACCGGCTGAGCAACCGCACGCTCATTT
*
13945911 CG
188 CA
*
13945913 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
13945954 CCCAGCCGGA
Statistics
Matches: 200, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
184 69 0.34
185 1 0.00
186 1 0.00
190 3 0.01
192 1 0.00
195 1 0.00
196 124 0.62
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (189 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGAAGGTCATTCCCAGTTGAA
GATCAGACTGAACCGAGGTGGTATGACCAACAGTAAGATCGACAGCACGTAAGGGGGACCGGGCC
GATCCCCAGCTTATGCATTCTACCTCTCCGACCGGCTGAGCAACCGCACGCTCATTTCA
Found at i:13946483 original size:26 final size:26
Alignment explanation
Indices: 13946452--13946504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13946442 GTTGACTTAG
13946452 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13946478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13946504 G
1 G
13946505 ATCGCACATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13946563 original size:158 final size:158
Alignment explanation
Indices: 13946269--13946554 Score: 407
Period size: 158 Copynumber: 1.8 Consensus size: 158
13946259 GAGCGCGCGC
* * * *
13946269 ACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAACCATACGGAGTTCG
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAACCATACGGAGTTCA
* *
13946334 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCCGGATCAACAGCATCCTAAGGGGA
66 TTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCAGCAGCAGGATCAACAGCATCCTAAGGGGA
13946399 CCGGGCCGATCCCTGGTTGAGTGCCCAT
131 CCGGGCCGATCCCTGGTTGAGTGCCCAT
* *
13946427 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAACCATACGGAGTTCA
* ** * * *
13946492 TTCCCAGTCTAAGATC-GCACATGA-CTGAGGGTTGTGGCAGTAGGATCGACAGCA-CGTAAGGG
66 TTCCCAGTCTAAGATCAG-ACAGGATC-GAGGGTTGCAGCAGCAGGATCAACAGCATCCTAAGGG
13946554 G
129 G
13946555 GATTGGGCCT
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
157 10 0.09
158 102 0.91
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (158 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAACCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCAGCAGCAGGATCAACAGCATCCTAAGGGGA
CCGGGCCGATCCCTGGTTGAGTGCCCAT
Found at i:13946673 original size:26 final size:26
Alignment explanation
Indices: 13946636--13946688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13946626 GTTGGTTTAG
*
13946636 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13946662 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
13946688 G
1 G
13946689 ATCGGGCTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13946745 original size:342 final size:342
Alignment explanation
Indices: 13946074--13946722 Score: 786
Period size: 342 Copynumber: 1.9 Consensus size: 342
13946064 TTCGATCGGC
* * *
13946074 TGAGTGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
1 TGAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
* * *
13946139 TACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAAGGTTACGACAGCAGGATCGATAGCA
66 TACGAAGTTCATTCCCAGTCTAAGATCAGACAGGACTGAAGGTTACGACAGCAGGATCGACAGCA
* * *
13946204 CGCAGAGGGGATCGAGCCAATCCTCAGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCGCGC
131 CGAAGAGGGGATCGAGCCAATCCTCAGCTTACGCATTCTACCTCTCCGATCGGCTGAGCGCGCAC
* * * * * *
13946269 ACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAACCATACGGAGTTCG
196 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCACCCCCAGTCTAACCATACGAAGTTCA
* * * * * *
13946334 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCCGGATCAACAGCATCCTAAGGGGA
261 TTCCCAGTCTAAGATCAGACCAGACCAAGGGCTGCAACAGCAGGATCAACAGCATCCTAAGGGGA
13946399 CCGGGCCGATCCCTGGT
326 CCGGGCCGATCCCTGGT
* *
13946416 TGAGTGCCCATACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
* * * ** * *
13946481 TACGGAGTTCATTCCCAGTCTAAGATC-GCACATGACTGAGGGTTGTGGCAGTAGGATCGACAGC
66 TACGAAGTTCATTCCCAGTCTAAGATCAG-ACAGGACTGAAGGTTACGACAGCAGGATCGACAGC
* * ** ** * *
13946545 ACGTAAG-GGGGATTGGGCCTGTACC-C-GACTTGTGCATTCTACCTCTCCGGTCGGTTGAGCGC
130 ACG-AAGAGGGGATCGAGCCAAT-CCTCAG-CTTACGCATTCTACCTCTCCGATCGGCTGAGCGC
* ** ** * *
13946607 -CTACACGCTCATTTTATGGGTTGGTTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGAA
192 GC-ACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCACCCCCAGTCTAACCATACGAA
* * *
13946671 GTTCATTCCCAGTCTAAGATCGGGCTAGACCAAGGGCTGCAACAGCAGGATC
256 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGCTGCAACAGCAGGATC
13946723 GGTAGCACGC
Statistics
Matches: 254, Mismatches: 48, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
341 3 0.01
342 247 0.97
343 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (342 bp):
TGAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
TACGAAGTTCATTCCCAGTCTAAGATCAGACAGGACTGAAGGTTACGACAGCAGGATCGACAGCA
CGAAGAGGGGATCGAGCCAATCCTCAGCTTACGCATTCTACCTCTCCGATCGGCTGAGCGCGCAC
ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCACCCCCAGTCTAACCATACGAAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCAAGGGCTGCAACAGCAGGATCAACAGCATCCTAAGGGGA
CCGGGCCGATCCCTGGT
Found at i:13946767 original size:184 final size:182
Alignment explanation
Indices: 13946413--13946846 Score: 458
Period size: 184 Copynumber: 2.4 Consensus size: 182
13946403 GCCGATCCCT
* * * *
13946413 GGTTGAGTGCCCATACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GGTTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAA
* ** * *** *
13946478 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACATGACTGAGGGTTGTGGCAGTAGGATCGACA
65 GCATACGAAGTTCATTCCCAGTCTAAGATCGCACATGACCAAGGGCTGCAACAGCAGGATCGACA
* ** * *
13946543 GCACGTAAGGGGGATTGGGCCTGTACCCGACTTGTGCATTCTACCTCTCCGGTC
130 GCACGCAAGGGGGACCGGG-CTGTACCCGACTTATGCATTCTACCTCTCCGGCC
* * * *
13946597 GGTTGAGCGCCTACACGCTCATTTTATGGGTTGGTTTAGGCATACAGAGTTCATTCCTAGTCTAA
1 GGTTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAA
** **
13946662 GCATACGAAGTTCATTCCCAGTCTAAGATCGGGC-TAGACCAAGGGCTGCAACAGCAGGATCGGT
65 GCATACGAAGTTCATTCCCAGTCTAAGATCGCACAT-GACCAAGGGCTGCAACAGCAGGATCGAC
* * * *
13946726 AGCACGCAGGGGGGACCGGG-TAGATCCCCGGCTTATGCATTCTGCCTCTCCGGCC
129 AGCACGCAAGGGGGACCGGGCT-G-TACCCGACTTATGCATTCTACCTCTCCGGCC
* * * * * * * *
13946781 TGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGTTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
13946846 G
65 G
13946847 ACCCAGCCAG
Statistics
Matches: 204, Mismatches: 41, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
182 1 0.00
183 5 0.02
184 198 0.97
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (182 bp):
GGTTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAG
CATACGAAGTTCATTCCCAGTCTAAGATCGCACATGACCAAGGGCTGCAACAGCAGGATCGACAG
CACGCAAGGGGGACCGGGCTGTACCCGACTTATGCATTCTACCTCTCCGGCC
Found at i:13946970 original size:159 final size:155
Alignment explanation
Indices: 13946729--13947163 Score: 503
Period size: 159 Copynumber: 2.8 Consensus size: 155
13946719 GATCGGTAGC
* * * * * * *
13946729 ACGCAGGGGGGACCGGGTAGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCTGCTGAGCACCCG
1 ACGCAGGAGGGACCGGGTCGAT-CCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
* * *
13946794 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCAGAC
65 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGAC
* *
13946859 CAAGGGTTGTGGCAGCGGGACTGGCATG
130 CAAGGGTTGTGGCAGCAGGA-TGG-ATA
* * * *
13946887 ACGCAGAGAGGGACCGGGCCGATCCCTGACTTGTGCATTATGCCTCTCCGTCCGGCTCAGCGCCC
1 ACGCAG-GAGGGACCGGGTCGATCCC-GACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
** * * * *** *
13946952 AAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATTGAACTAG
64 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAACCAG
*
13947016 ACCAAGGGTTGTGGCAGCAGGATTGATA
128 ACCAAGGGTTGTGGCAGCAGGATGGATA
* * * *
13947044 ACATGCAGGAGGGACCGGGTCGGTCCCCAGCTTGTGCATTCTACCTCTCCGACTGGCTGAGCGCC
1 AC--GCAGGAGGGACCGGGTCGATCCCGA-CTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
13947109 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAG
63 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13947164 CATACGGAGT
Statistics
Matches: 231, Mismatches: 39, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
157 8 0.03
158 103 0.45
159 117 0.51
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
ACGCAGGAGGGACCGGGTCGATCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACC
AAGGGTTGTGGCAGCAGGATGGATA
Found at i:13947136 original size:158 final size:157
Alignment explanation
Indices: 13946662--13947154 Score: 544
Period size: 158 Copynumber: 3.1 Consensus size: 157
13946652 CCTAGTCTAA
* * * *** *
13946662 GCATACGAAGTTCATTCCCAGTCTAAGATCGGGCTAGACCAAGGGCTGCAACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGCTAGACCAAGGGTTGTGGCAGCAGGATCGATA
* * * * * * *
13946727 GCACGCAGGGGGGACCGGGTAGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCT-GCTGAGCAC
66 ACA-GCAGGAGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCC-GACTGGCTGAGCGC
*
13946791 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
13946820 GCATAGGGAGTTCATT-CCATGTCTAAGACCCAGCCAGACCAAGGGTTGTGGCAGCGGGACTGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAGCTAGACCAAGGGTTGTGGCAGCAGGA-TCG-
* * * * * * *
13946884 ATGAC-GCAGAGAGGGACCGGGCCGAT-CCCTGACTTGTGCATTATGCCTCTCCGTCCGGCTCAG
63 ATAACAGCAG-GAGGGACCGGGTCGATCCCCAG-CTTGTGCATTCTGCCTCTCCGACTGGCTGAG
** * *
13946947 CGCCCAAACGCTCGTTTCATGGGTTGACTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
13946979 GCATACGGAGTTCATTCCCAATCTAAGATTGAACTAGACCAAGGGTTGTGGCAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGCTAGACCAAGGGTTGTGGCAGCAGGATCGATA
* *
13947044 ACATGCAGGAGGGACCGGGTCGGTCCCCAGCTTGTGCATTCTACCTCTCCGACTGGCTGAGCGCC
66 ACA-GCAGGAGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCGCC
13947109 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
13947137 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13947155 ATGTTTAAGC
Statistics
Matches: 273, Mismatches: 52, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 7 0.03
158 142 0.52
159 119 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAGCTAGACCAAGGGTTGTGGCAGCAGGATCGATA
ACAGCAGGAGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13947907 original size:26 final size:26
Alignment explanation
Indices: 13947871--13947921 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13947861 TTGACTTAGG
13947871 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
*
13947897 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
13947922 GATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:13948449 original size:158 final size:159
Alignment explanation
Indices: 13947930--13948557 Score: 541
Period size: 159 Copynumber: 4.0 Consensus size: 159
13947920 AAGATCAGAC
* * * * *
13947930 CGGACTGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAG-GGGGGATCGGGCCGTTCCCCGGCTT
1 CGGACTGAGGGTTGCGGCAGCAAGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTT
* * * * * * * *
13947994 GCGTATTCTGCCTCTCCGGTCAGCTAAGCGCCCACACACCTGTTTCGTGGGTTGGCTTAGGCATA
66 GCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATA
* * * **
13948059 GGGAGTTCATTCCCTTTTTAAGCCCCAGC
131 GGGAGTTCATTCCATGTCTAAGCCCCAAT
* * * * ** * * * *
13948088 CAGACCGAGGGTTGTGGTAGTGAGACCGATAGCATGCAAAGGGGGATCGGGTCGATCCCCGACTT
1 CGGACTGAGGGTTGCGGCAGCAAGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTT
* * * * * * *
13948153 GCGCATTATGCCTTTCCAACCGACTCAAG-GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCTT
66 GCGCATTATGCCTCTCCAGCCGGCT-AAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCAT
* ** **
13948217 ACGGAGTTCATTCCCA-GTCTAAGATCGGAT
130 AGGGAGTTCATT-CCATGTCTAAGCCCCAAT
* * * * * * *
13948247 CGGACTGAGGGTTGCGACAGC-AGCATCGACAGCACGGAGGGGGGGACCAGGCCTG-TCCTCGAC
1 CGGACTGAGGGTTGCGGCAGCAAG-ACCGATAGCACGCAGAGGGGGACCGGGCC-GATCCCCGAC
* * * * * *
13948310 TTGCACATT-TGCCTCTGCGGTCGGCTGAGCGCCCGCACGCTTATTTCGTGGGTTGGCTTAGGCA
64 TTGCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCA
13948374 TAGGGAGTTCATTCCATGTCTAAGCCCCAAT
129 TAGGGAGTTCATTCCATGTCTAAGCCCCAAT
*** * * * *
13948405 CGGACTGAGGGTTGCGGCAGTGGGACCGGTAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTT
1 CGGACTGAGGGTTGCGGCAGCAAGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTT
* * * * ** * *
13948470 GCGCATTATGCCTCAT-CAGCCGGCTCAGTGCCCGTACACCCGTTTTGTGGGTTAGCTTAGGCAT
66 GCGCATTATGCCTC-TCCAGCCGGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCAT
*
13948534 AGAGAGTTCATTCCATGTCTAAGC
130 AGGGAGTTCATTCCATGTCTAAGC
13948558 ATGTAGGGGG
Statistics
Matches: 361, Mismatches: 98, Indels: 21
0.75 0.20 0.04
Matches are distributed among these distances:
157 6 0.02
158 147 0.41
159 201 0.56
160 7 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
CGGACTGAGGGTTGCGGCAGCAAGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTT
GCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAAT
Found at i:13948478 original size:317 final size:317
Alignment explanation
Indices: 13947897--13948556 Score: 807
Period size: 317 Copynumber: 2.1 Consensus size: 317
13947887 CCAGTCTAAA
* * **
13947897 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGGTAG
1 CATAGAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAAGATCGACAG
* * * **
13947962 CACGCAGGGGGGATCGGGCCGTTCCCCGGCTTGCGTATTCTGCCTCTCCGGTCAGCTAAGCGCCC
66 CACGCAGGGGGGACCAGGCCGTTCCCCGACTTGCACATTCTGCCTCTCCGGTCAGCTAAGCGCCC
* * * * *
13948027 ACACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCCTTTTTAAGCCCCAGCCAGA
131 ACACACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
* * *
13948092 CCGAGGGTTGTGGTAGTGAGACCGATAGCATGCAAAGGGGGATCGGGTCGATCCCCGACTTGCGC
196 CCGAGGGTTGCGGCAGTGAGACCGATAGCATGCAAAGGGGGACCGGGTCGATCCCCGACTTGCGC
* * *
13948157 ATTATGCCT-TTCCAACCGACTCAAG-GCCCGCACGCTCGTTTTGTGGGTT-GACTTAGG
261 ATTATGCCTCAT-CAACCGACTC-AGTGCCCGCACACCCGTTTTGTGGGTTAG-CTTAGG
* * *
13948214 CTTACG-GAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGC-AGCATCGAC
1 CATA-GAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAAG-ATCGAC
* * * * *
13948277 AGCACGGAGGGGGGGACCAGGCC-TGTCCTCGACTTGCACATT-TGCCTCTGCGGTCGGCTGAGC
64 AGCACGCA-GGGGGGACCAGGCCGT-TCCCCGACTTGCACATTCTGCCTCTCCGGTCAGCTAAGC
* * * *
13948340 GCCCGCACGCTTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAT
127 GCCCACACACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * * *
13948405 CGGACTGAGGGTTGCGGCAGTGGGACCGGTAGCATGCAGAGGGGGACCGGG-CTGATCCCCGGCT
192 CAGACCGAGGGTTGCGGCAGTGAGACCGATAGCATGCAAAGGGGGACCGGGTC-GATCCCCGACT
* * *
13948469 TGCGCATTATGCCTCATCAGCCGGCTCAGTGCCCGTACACCCGTTTTGTGGGTTAGCTTAGG
256 TGCGCATTATGCCTCATCAACCGACTCAGTGCCCGCACACCCGTTTTGTGGGTTAGCTTAGG
13948531 CATAGAGAGTTCATT-CCATGTCTAAG
1 CATAGAGAGTTCATTCCCA-GTCTAAG
13948557 CATGTAGGGG
Statistics
Matches: 291, Mismatches: 42, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
316 9 0.03
317 255 0.88
318 27 0.09
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
CATAGAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAAGATCGACAG
CACGCAGGGGGGACCAGGCCGTTCCCCGACTTGCACATTCTGCCTCTCCGGTCAGCTAAGCGCCC
ACACACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
CCGAGGGTTGCGGCAGTGAGACCGATAGCATGCAAAGGGGGACCGGGTCGATCCCCGACTTGCGC
ATTATGCCTCATCAACCGACTCAGTGCCCGCACACCCGTTTTGTGGGTTAGCTTAGG
Found at i:13948685 original size:26 final size:26
Alignment explanation
Indices: 13948649--13948700 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13948639 GTTGGCTTAG
13948649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13948675 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13948701 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13949730 original size:26 final size:26
Alignment explanation
Indices: 13949694--13949746 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13949684 GTTGACTTAG
13949694 GCATACGGAGTTC-ATCCCCAGTATAA
1 GCATACGGAGTTCAAT-CCCAGTATAA
*
13949720 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTATAA
13949746 G
1 G
13949747 ATCCAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTATAA
Found at i:13950067 original size:26 final size:26
Alignment explanation
Indices: 13950037--13950089 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13950027 GTTGGCTTAG
13950037 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13950063 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13950089 G
1 G
13950090 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13951167 original size:159 final size:158
Alignment explanation
Indices: 13950789--13951274 Score: 440
Period size: 158 Copynumber: 3.1 Consensus size: 158
13950779 TAAGCATATA
* * * * * * *
13950789 GAGTTCATTCCCATTCTAAGATTAGATTGGACCGAGGGTTGCGGCAGGAGGATCAACAGCACCCC
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
* * * * * * * * *
13950854 GGAGGGATCGGGCAGATCCCCGGCTTGCGGATTTTGCCTCTCCGACTGGCTGAGCGCCCATACAC
66 GGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGTACGC
* *
13950919 CCGTTTCGTGGGTTGGCTTAGGCATAGG
131 TCGTTTCGTGGGTTGGCTTAGGCATACG
** ** * * **
13950947 GAGTTCATT-CCATGTCTAAGCCCTAG-TCGGATTGAAGGTTGTGGCAGTC-GGA-CTGGTAGCA
1 GAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAG-CAGGATC-GACAGCA
* * * *
13951008 CACAGAGAGGGACCGGGCCGATCCTCTGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCG
62 CACAG-GAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCG
* * *
13951073 TACGCTCATTTCATGGGTTGACTTAGGCATACG
126 TACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * * **
13951106 GACTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
* * * * * ** * * * *
13951171 GGGGGGACCGGGTCGGTCCCCAGCTTGCGTATTCTATCTCTCCGGTCGGCTGAGCGTCTGCACGC
66 GGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGTACGC
*
13951236 TCGTTTCGTGGGTTGGCTTAGGCATATG
131 TCGTTTCGTGGGTTGGCTTAGGCATACG
13951264 GAGTTCATTCC
1 GAGTTCATTCC
13951275 ATGTCCAAGC
Statistics
Matches: 253, Mismatches: 66, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 4 0.02
158 127 0.50
159 118 0.47
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
GGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGTACGC
TCGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:13951882 original size:26 final size:26
Alignment explanation
Indices: 13951830--13951882 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13951820 GTTGGCTTAG
* *
13951830 GCATACGGAGTTTACTCCATGTTTAA
1 GCATACGGAGTTCACTCCATGTCTAA
*
13951856 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCACT-CCATGTCTAA
13951882 G
1 G
13951883 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCATGTCTAA
Found at i:13958438 original size:26 final size:26
Alignment explanation
Indices: 13958409--13958461 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13958399 GTTGACTTAG
* *
13958409 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
13958435 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
13958461 G
1 G
13958462 ATCAGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:13958730 original size:159 final size:159
Alignment explanation
Indices: 13958529--13958939 Score: 456
Period size: 159 Copynumber: 2.6 Consensus size: 159
13958519 CCAATTCCCA
* *
13958529 GCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTTT-CCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * * *
13958594 CATAGGGAGTTCATTCCATGTCTAAGCCCCA-G-TCGGACCGAGGGTTGTGGCAGCGGGACCGAC
65 CATACGGAGTTCATTCCATGTCTAAG-CACAGGACCAGACCGAGGGTTGCGGCAGCAGGACCGAC
*
13958657 AGCATGCAGAAGGG-GACCGAACCGATCCCTG
129 AGCACGCAG-AGGGAGACCGAACCGATCCCTG
* * * *
13958688 GCTTGCGCATTATTCCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATT-TTCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * **
13958753 CGTACGGAGTTCATTCCCA-GTCTAAG-ATAGGACCAGAGCGAGGGTTGCGGCAGTAGGATTGAC
65 CATACGGAGTTCATT-CCATGTCTAAGCACAGGACCAGACCGAGGGTTGCGGCAGCAGGACCGAC
* **
13958816 AGCACGCAGGGGGAGACCGGGCCGATCCCTG
129 AGCACGCAGAGGGAGACCGAACCGATCCCTG
* * * * * * *
13958847 GCTTGCACATTCTGCCTCT-CGTGCCAGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAG
1 GCTTGCGCATT-TTCCTCTCCG-GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
13958911 GCATACGGAGTTCATTCCATGTCTAAGCA
64 GCATACGGAGTTCATTCCATGTCTAAGCA
13958940 TACGGAGTTC
Statistics
Matches: 209, Mismatches: 35, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
157 1 0.00
158 9 0.04
159 193 0.92
160 6 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GCTTGCGCATTTTCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCACAGGACCAGACCGAGGGTTGCGGCAGCAGGACCGACAG
CACGCAGAGGGAGACCGAACCGATCCCTG
Found at i:13958960 original size:26 final size:26
Alignment explanation
Indices: 13958911--13958961 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13958901 GTTGGCTTAG
*
13958911 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
13958937 GCATACGGAGTTCAATCCCA-GTCTA
1 GCATACGGAGTTC-ATCCCATGTCTA
13958962 TGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:13959981 original size:26 final size:26
Alignment explanation
Indices: 13959951--13960003 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13959941 CTTGGTTTAG
*
13959951 GCATAC-GAAGTTCATCCCCATTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
13959977 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13960003 G
1 G
13960004 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13960004 original size:184 final size:182
Alignment explanation
Indices: 13959621--13960099 Score: 498
Period size: 184 Copynumber: 2.6 Consensus size: 182
13959611 CTTACGGAGA
* * * * **
13959621 TCATTCCCAGCCTAAGATCAGACTGGACCTAGGGTTGTGGCAGTAGGATTAACAGCACGCAGGGG
1 TCATTCCCAGTCTAAGATCAGAC-AGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGG
* * * * ** * * * *
13959686 GGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCAACCGACTG-GCGGCCGCACGCTCGT
65 GGACCGGGTCGATCCC-GGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGACCGAACGCTCAT
* * * *
13959750 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACATATAGAGT
129 TTCATGGCTTGGCTTAGGCATACGAAGTTCATCCCATGTCTAAACATACAGAGT
* * * *
13959804 TCATTCTCAATCTAAGATTAGATCAGACCGAGTGTTGTGGCAGCAGGATCGACAGCACGCAGGGG
1 TCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGG
** *
13959869 GGATTGGGTCGATACCCGGCTTACGCATTCTACCTCTCTGGCCGGCTGAGC-ACCGAAACGCTCA
65 GGACCGGGTCGAT-CCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGACCG-AACGCTCA
* *
13959933 TTTCATGGCTTGGTTTAGGCATACGAAGTTCATCCCCAT-TCTAAGCATACAGAGT
128 TTTCATGGCTTGGCTTAGGCATACGAAGTTCAT-CCCATGTCTAAACATACAGAGT
* * * * * * *
13959988 TCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAAGATCGGCATCACGCA-GGG
1 TCATTCCCAGTCTAAGATCAGACAG-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGG
* * * * *
13960052 TGACCAGGTAGGTCCCGGCTTACGCATTCTACCTCTCCGGGCGGCTGA
65 GGACCGGGTCGATCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGA
13960100 ACCCCTACAC
Statistics
Matches: 242, Mismatches: 48, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
182 33 0.14
183 102 0.42
184 103 0.43
185 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (182 bp):
TCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGG
GACCGGGTCGATCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGACCGAACGCTCATTT
CATGGCTTGGCTTAGGCATACGAAGTTCATCCCATGTCTAAACATACAGAGT
Found at i:13960486 original size:158 final size:159
Alignment explanation
Indices: 13960114--13960504 Score: 416
Period size: 158 Copynumber: 2.5 Consensus size: 159
13960104 CTACACGCCG
** ** *
13960114 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTGTTTCCATGTCTAAGCCCCAGCCGGACTGAAGGTT
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTT
* * * *
13960179 GTGGCAGCAGGACTGGCAGCACGCAGAAGGGGACCAGACTGATCTCCGACTTGCGCATTATGCCT
66 GTGGCAGCAAGACTGACAGCACACAGAAGGGGACCAGACCGATCTCCGACTTGCGCATTATGCCT
* * * * *
13960244 TTTCGGTCGGCTCAGCGACCGCACGCTCG
131 TCTCCGTCAGCTCAGCGACCGCACACTCA
* * ** * *
13960273 TTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTCAA-ATCGAACCGGACCGAAGG
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCT-AAGCCCCAGCCGGACCGAAGG
* * * * *
13960336 TTGCGGCAGCAAGATTGATAGCACACAG-GGGGGACC-GAGCCGATC-CTCGACTTGCGCATTCT
64 TTGTGGCAGCAAGACTGACAGCACACAGAAGGGGACCAGA-CCGATCTC-CGACTTGCGCATTAT
* *
13960398 GCC-TCTCCGTCCAGCTGAGCGCCCGCACACTCA
127 GCCTTCTCCGT-CAGCTCAGCGACCGCACACTCA
* * * *
13960431 TTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTT
13960496 GTGGCAGCA
66 GTGGCAGCA
13960505 GGACCAGTAA
Statistics
Matches: 187, Mismatches: 38, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 13 0.07
158 102 0.55
159 67 0.36
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTT
GTGGCAGCAAGACTGACAGCACACAGAAGGGGACCAGACCGATCTCCGACTTGCGCATTATGCCT
TCTCCGTCAGCTCAGCGACCGCACACTCA
Found at i:13961166 original size:158 final size:158
Alignment explanation
Indices: 13960772--13961166 Score: 363
Period size: 158 Copynumber: 2.5 Consensus size: 158
13960762 GCCCGTTTCG
* * *
13960772 TGGGTTGGCTTAGGCAT-CAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGATTGTGG
1 TGGGTTGACTTAGGCATAC-GGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGG
* * *
13960836 CAGCGGGACC-AGCAGCACACAGAGGGGGACCAGGCAGATCCTCAGCTTGCGCATTATGCCTCTT
65 CAGCAGGACCGA-CAGCACACAGAGGGGGACCAGGCAGATCCCCAGCTTGAGCATTATGCCTCTT
* * * * * ** *
13960900 CGGTCGGCTCAGTGCCCACACGCTCGTTTCG
129 CAGCCAGCT-AGAGCACACACGCTCAATTCA
* ** * * ** *
13960931 TGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCCAATCGGACCAAAGGTTACGA
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGG
* * * ** * * * *
13960995 TAGTAGGATCGACAGCACGTAG-GGGGGACTAGTTC-GATCCCCGGCTTGAGCATTTTGCCT-TT
65 CAGCAGGACCGACAGCACACAGAGGGGGACCAG-GCAGATCCCCAGCTTGAGCATTATGCCTCTT
*
13961057 CCAGCCAGCT-GAGCACACGCGTGCTCAATTCA
129 -CAGCCAGCTAGAGCACACAC--GCTCAATTCA
* *
13961089 TGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGC
13961154 AGCAGGACCGACA
66 AGCAGGACCGACA
13961167 ATAAGATCGG
Statistics
Matches: 183, Mismatches: 45, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
156 7 0.04
157 5 0.03
158 104 0.57
159 62 0.34
160 5 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGC
AGCAGGACCGACAGCACACAGAGGGGGACCAGGCAGATCCCCAGCTTGAGCATTATGCCTCTTCA
GCCAGCTAGAGCACACACGCTCAATTCA
Found at i:13961622 original size:159 final size:159
Alignment explanation
Indices: 13961397--13961815 Score: 429
Period size: 159 Copynumber: 2.6 Consensus size: 159
13961387 GATACTGGGC
* * * * * * *
13961397 CGATCCCTGGCTTACGCATTCTGCCTCTCC-GATTGACTGAGCGCCCACATGCCCGTTTCGTTGG
1 CGATCCCTGACTTACGCATTCTGCCTCTCCAG-CTGGCTGAGCGCCCGCACGCTCGTTTCGTAGG
** * ** *
13961461 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC-AGACCGA-GGGTTGTGGTA
65 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGA-ACC-ATGGGTTGCAGCA
**
13961523 GCGCGACCGACAGCACGCAGAGGGGGATCGGGT
128 GCAAGACCGACAGCACGCAG-GGGGGATCGGGT
* * * *
13961556 CGATCCCTGACTTGCGCATTATGCCTCTCCAGCTGGCTCAGCGCCCGCACGCTCGTTTTGTAGGT
1 CGATCCCTGACTTACGCATTCTGCCTCTCCAGCTGGCTGAGCGCCCGCACGCTCGTTTCGTAGGT
* * * *
13961621 TGACTTAGGCATACAAAGTTCATTCCCA-GTCTAAG-ATCGGACCGAACCATGGGTTGCAGCAGC
66 TGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCATGGGTTGCAGCAGC
** * *
13961684 AAGATTGATAGCATGCAGGGGGGATCGGGT
130 AAGACCGACAGCACGCAGGGGGGATCGGGT
* * * * * * *
13961714 CGGTCCCTGACTTACGCATTCTGCCTCTCCGATCT-GTTGAGCACTCGTACGCTCGTTTCGTGGG
1 CGATCCCTGACTTACGCATTCTGCCTCTCC-AGCTGGCTGAGCGCCCGCACGCTCGTTTCGTAGG
13961778 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
65 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
13961816 TATGAAGTTC
Statistics
Matches: 212, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 94 0.44
159 110 0.52
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (159 bp):
CGATCCCTGACTTACGCATTCTGCCTCTCCAGCTGGCTGAGCGCCCGCACGCTCGTTTCGTAGGT
TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGAACCATGGGTTGCAGCAGCA
AGACCGACAGCACGCAGGGGGGATCGGGT
Found at i:13962137 original size:155 final size:156
Alignment explanation
Indices: 13961888--13962177 Score: 413
Period size: 155 Copynumber: 1.9 Consensus size: 156
13961878 GCAGAAAGGG
* * * * * * *
13961888 GGGGACTGGACCGATCCCCGACTTGCGCATTCTGTCTCTCCGATCGGTTGAGCGCTTGCACGCTC
1 GGGGACTGGACCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCTACACGCCC
* * * *
13961953 GTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
66 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCGAGGGT
13962018 TGTGGTAACAGGATCGACAGCACGTA
131 TGTGGTAACAGGATCGACAGCACGTA
* * *
13962044 GGGGACCTGG-CCGATCCCTG-CTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCCTACACGCC
1 GGGGA-CTGGACCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCTACACGCC
**
13962107 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGATTGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCGAGGG
13962172 TTGTGG
130 TTGTGG
13962178 CAGCGGGATC
Statistics
Matches: 117, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
155 99 0.85
156 14 0.12
157 4 0.03
ACGTcount: A:0.16, C:0.27, G:0.31, T:0.26
Consensus pattern (156 bp):
GGGGACTGGACCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCTACACGCCC
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCGAGGGT
TGTGGTAACAGGATCGACAGCACGTA
Found at i:13963457 original size:26 final size:26
Alignment explanation
Indices: 13963416--13963465 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
13963406 CTAGTCTAAT
13963416 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
13963442 CTTAGACTAGGG-ATGAACTCCGTA
1 CTTAGACT-GGGAATGAACTCCGTA
13963466 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:13963798 original size:26 final size:26
Alignment explanation
Indices: 13963757--13963809 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13963747 CCGATCTGAT
13963757 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13963783 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
13963809 C
1 C
13963810 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13963928 original size:184 final size:184
Alignment explanation
Indices: 13963599--13964078 Score: 481
Period size: 184 Copynumber: 2.6 Consensus size: 184
13963589 TCTGGTTCGG
* * * * *
13963599 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GGGT-ACGGGCA-CTC
1 GCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGA-GGG-AGCTC
* * * * ** **
13963661 AGCCGATCGGAGAGGTAGAATGCACAAGCCAGGGATTGGTCCAGTCCCCCCTTCGTGCTGTCGAT
64 AGCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCGGCGTGCTGTCGAT
* * * * ** *
13963726 CTTGCTGTCGCAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCATAT
129 CCTACTGTCGCAACCCTCGATCCAG-TCTAATCTTAGACTAAGAATGAACTCCATAA
* *
13963782 GCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGGAGCTCAG
1 GCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGAGCTCAG
** * *
13963847 CCGACCAGAGAGGCAGAATGTGCAAGCC-GAGGATCGACCCGGTCCCCCCGGCGTGCTGTCTATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCAG-GGATCGACCCAGTCCCCCCGGCGTGCTGTCGATC
* **
13963911 CTACTG-CTGTAACCCTCGATCCAGTCTAATCTTAGACTAAGAATGAACTCTGTAA
130 CTACTGTC-GCAACCCTCGATCCAGTCTAATCTTAGACTAAGAATGAACTCCATAA
* * * * *
13963966 GCTTAGACTAGGGATGAATTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 GCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGAGCTCAG
* * * * * *
13964031 CCGGCC-GAAAAGGCATAATGCGCAAG-TAGGGGATCGGCCCAGTCCCCC
66 CCGACCAG-AGAGGCAGAATGCACAAGCCA-GGGATCGACCCAGTCCCCC
13964079 TCTGTGTGCT
Statistics
Matches: 245, Mismatches: 43, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
183 46 0.19
184 196 0.80
185 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGAGCTCAG
CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCGGCGTGCTGTCGATCC
TACTGTCGCAACCCTCGATCCAGTCTAATCTTAGACTAAGAATGAACTCCATAA
Found at i:13963947 original size:341 final size:341
Alignment explanation
Indices: 13963232--13963960 Score: 724
Period size: 341 Copynumber: 2.1 Consensus size: 341
13963222 NNNNNTCCTG
* * *** * *
13963232 CTGCCACAACCCTTGGTCCAGTTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCAGTTCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * ** *
13963297 CACAAAACGAACATGCGAGCACTCAACCGGCCGAAGAGGTAGAATGTGCAAGCTGAGGATCGACC
66 CACAAAACGAACATACGAGCACTCAACCGACCGAAGAGGTAGAATGCACAAGCAGAGGATCGACC
* *
13963362 TGGTCCCCCTATGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCTAGTCTAATCTTAGACTGGG
131 TAGTCCCCCTATGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCGAGTCTAATCTTAGACTGGG
*
13963427 AATGAACTCCGTAAGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
196 AATGAACTCCATAAGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
** * * * * * * * *
13963492 GTTCGGGCATTGAGCCGGCCAAAAAGCATAATGCGTAAGCCAGGGATCGGCCCAGTCCCTCTCTG
261 GTGAGGGCACTCAGCCGACCAAAAAGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCTCCCGG
* *
13963557 CATGCTGCCGGTCCCG
326 CATGCTGCCGATCCCA
* * ** **
13963573 CTGCCACAGCCCTCGGTCTGGTTCGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCAGTTCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * *** * * * * * *
13963638 CACGAAATG-GGGTACGGGCACTCAGCCGATCGGAGAGGTAGAATGCACAAGCCAG-GGATTGGT
66 CACAAAACGAACATACGAGCACTCAACCGACCGAAGAGGTAGAATGCACAAG-CAGAGGA-TCGA
* * *
13963701 CC-AGTCCCCCCT-TCGTGCTGTCGATCTTGCTG-TCGCAACCCTCGGTCCGA-TCTGATCTTAG
129 CCTAGT-CCCCCTAT-GTGCTGTCGATCCTACTGCT-GCAACCCTCGGT-CGAGTCTAATCTTAG
* *
13963762 ACTGGGAATGAACTCCATATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
190 ACTGGGAATGAACTCCATAAGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * *
13963827 ACGAGCGTGAGGG-AGCTCAGCCGACCAGAGAGGCAGAATGTGCAAGCC-GAGGATCGACCCGGT
255 ACGAGCGTGAGGGCA-CTCAGCCGACCA-AAAAGCAGAATGCGCAAGCCAG-GGATCGACCCAGT
* * * *
13963890 CCC-CCCGGCGTGCTGTCTATCCTA
317 CCCTCCCGGCATGCTGCCGATCCCA
*** * *
13963914 CTGCTGTAACCCTCGATCCAG-TCTAATCTTAGAC-TAAGAATGAACTC
1 CTGCCACAACCCTCGATCCAGTTC-AAGCTTAGACAT-GGAATGAACTC
13963961 TGTAAGCTTA
Statistics
Matches: 315, Mismatches: 62, Indels: 22
0.79 0.16 0.06
Matches are distributed among these distances:
340 42 0.13
341 242 0.77
342 31 0.10
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (341 bp):
CTGCCACAACCCTCGATCCAGTTCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACAAAACGAACATACGAGCACTCAACCGACCGAAGAGGTAGAATGCACAAGCAGAGGATCGACC
TAGTCCCCCTATGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCGAGTCTAATCTTAGACTGGG
AATGAACTCCATAAGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
GTGAGGGCACTCAGCCGACCAAAAAGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCTCCCGG
CATGCTGCCGATCCCA
Found at i:13964295 original size:525 final size:524
Alignment explanation
Indices: 13963260--13964408 Score: 1547
Period size: 525 Copynumber: 2.2 Consensus size: 524
13963250 CAGTTGGGGT
* * * * * * * *
13963260 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACATGCGAGCA-CTCAAC
1 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GGAGCTCAGC
* * * * * *
13963324 CGGCC-GAAGAGGTAGAATGTGCAAGCTGAGGATCGACCTGGTCCCCCTATGTGCTGTCGATCCT
65 CGACCAG-AGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCCGACGTGCTGTCGATCCT
* * **
13963388 ACTGCTGCAACCCTCGGTCTAGTCTAATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTAGG
129 ACTGCTGCAACCCTCGATCCAGTCTAATCTTAGACTAAGAATGAACTCCGTAAGCTTAGACTAGG
* * *
13963453 GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGGCCAAAAAG
194 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCAAAAAG
* * * *
13963518 CATAATGCGTAAGCCAGGGATCGGCCCAGTCCCTCTCTGCATGCTGCCGGTCCCGCTGCCACAGC
259 CATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGGTCCCGCTGCCACAAC
* *
13963583 CCTCGGTCTGGTTCGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGG
324 CCTCGGTCTGGTTCGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAAGGG
* * * * **
13963648 GGTACGGGCACTCAGCCGATCGGAGAGGTAGAATGCACAAGCCAGGGATTGGTCCAGTCCCCCCT
389 GGTACGGGCACTCAGCCGACCGGAGAGGCAAAAAGCACAAGCCAGGGATTGACCCAGTCCCCCCT
* * * * *
13963713 TCGTGCTGTCGATCTTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCC
454 ACGTGCTGCCGATCCTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
13963778 ATATGC
519 ATATGC
* *
13963784 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGGAGCTCAGCC
1 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCC
* *
13963849 GACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCCCGGCGTGCTGTCTATCCTA
66 GACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGT-CCCCCGACGTGCTGTCGATCCTA
* *
13963914 CTGCTGTAACCCTCGATCCAGTCTAATCTTAGACTAAGAATGAACTCTGTAAGCTTAGACTAGGG
130 CTGCTGCAACCCTCGATCCAGTCTAATCTTAGACTAAGAATGAACTCCGTAAGCTTAGACTAGGG
* * ** *
13963979 ATGAATTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCGGCCGAAAAGG
195 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGCC-AAAAAG
* **
13964044 CATAATGCGCAAG-TAGGGGATCGGCCCAGTCCCCCTCTGTGTGCTACCGGTCCCGCTGCCACAA
259 CATAATGCGCAAGCCA-GGGATCGGCCCAGTCCCCCTCTGCATGCTACCGGTCCCGCTGCCACAA
* *
13964108 CCCTTGGTCTGGTTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAAGG
323 CCCTCGGTCTGGTTCGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAAGG
* *
13964173 GGCGTGCGGGCACTCAGCCG-CCGGAGAGGCAAAAAGCGCAAGCC-GAGGATTGACCC-GATCCC
388 GG-GTACGGGCACTCAGCCGACCGGAGAGGCAAAAAGCACAAGCCAG-GGATTGACCCAG-TCCC
* * * *
13964235 CCCTACGTGTTGCCGATCCTACTGTCGCAGCCCTC-GTCTGATCCGATCTTAGATTGGGAATGAA
450 CCCTACGTGCTGCCGATCCTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAA
** *
13964299 CTCTGTATGG
515 CTCCATATGC
* * * *
13964309 TTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCC
* * *
13964374 AACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGA
66 GACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGA
13964409 ACAGGTGGTA
Statistics
Matches: 545, Mismatches: 72, Indels: 15
0.86 0.11 0.02
Matches are distributed among these distances:
523 2 0.00
524 87 0.16
525 257 0.47
526 183 0.34
527 16 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (524 bp):
TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCC
GACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCCGACGTGCTGTCGATCCTAC
TGCTGCAACCCTCGATCCAGTCTAATCTTAGACTAAGAATGAACTCCGTAAGCTTAGACTAGGGA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCAAAAAGCA
TAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGGTCCCGCTGCCACAACCC
TCGGTCTGGTTCGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAAGGGGG
TACGGGCACTCAGCCGACCGGAGAGGCAAAAAGCACAAGCCAGGGATTGACCCAGTCCCCCCTAC
GTGCTGCCGATCCTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCAT
ATGC
Found at i:13965492 original size:26 final size:26
Alignment explanation
Indices: 13965463--13965515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13965453 CCGATCTGAT
* *
13965463 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
13965489 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13965515 C
1 C
13965516 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Done.