Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 78 of 138
Found at i:13965981 original size:25 final size:25
Alignment explanation
Indices: 13965947--13965997 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
13965937 CCAGTCTGAT
* *
13965947 CTTAGACTGGGAATGACTTCGTATG
1 CTTAGACTGGGAATAACTTCATATG
*
13965972 CTTAGACTGGGGATAACTTCATATG
1 CTTAGACTGGGAATAACTTCATATG
13965997 C
1 C
13965998 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGAATAACTTCATATG
Found at i:13966311 original size:26 final size:26
Alignment explanation
Indices: 13966282--13966336 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
13966272 GTGCTATCGA
*
13966282 TCCTGCTATCGCAACCCACGGTCTGG
1 TCCTGCTACCGCAACCCACGGTCTGG
13966308 TCCTGCTACCGCAACCCACGGTCTGG
1 TCCTGCTACCGCAACCCACGGTCTGG
13966334 TCC
1 TCC
13966337 GATCCTAGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.15, C:0.42, G:0.22, T:0.22
Consensus pattern (26 bp):
TCCTGCTACCGCAACCCACGGTCTGG
Found at i:13967186 original size:158 final size:156
Alignment explanation
Indices: 13966446--13967279 Score: 600
Period size: 158 Copynumber: 5.3 Consensus size: 156
13966436 CCCACTGCCA
* * * * * **
13966446 CAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAATCGGCGAA
1 CAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAA
* * * * * * * *
13966511 ACGGGCGTGCGGTCGCTCAGCCAGCCGGAGAGGCAGAATGTGCAAGCCGGGGACCAGCCCAGTCC
65 ACGAGCGTGCGGGCACTCAACCGGCC-GAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGTCC
* * *
13966576 CCCCTACGTTCTATCGATCCTGCTATCG
129 CCCCTACGTGCTATCGATCCCGCTACCG
* ** ** * * * *
13966604 CAACCCTCGGTCTGGTCCGATCTTAGA-TTGGGAATGATCTTCGTATGCCTAA-CTCAACCTACA
1 CAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACC-ACG
* ** * * * ** * *
13966667 AAACGAGTGTGCGGGTGCT-AAGTCGACCGAGAGGCATAATGCACAAGTCGAGGATCGGCCCGGT
63 AAACGAGCGTGCGGGCACTCAA-CCGGCCGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGT
*
13966731 ACCCCTCTACGTGCTATCG-TCCCGCTACCG
127 -CCCCCCTACGTGCTATCGATCCCGCTACCG
*
13966761 CAACCCTCGGTCCGGTTGGGGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAA
* * * * *
13966826 ACGAGCGTGCAGGCACTC-AGCGGTCAGAGAGGCAGAATGAGCAAGTCG-GGAT-ATGCCCGGTC
65 ACGAGCGTGCGGGCACTCAACCGG-CCGAGAGGCAGAATGTGCAAGCCGAGGATCA-GCCCGGTC
* * * * *
13966888 CCCCCTGCGTGCTGTCGATCCTGATGCCG
128 CCCCCTACGTGCTATCGATCCCGCTACCG
* * ** * * *
13966917 CAACCTTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACG
1 CAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA-CCACG
* * * * * *
13966980 AAACGAGCATGCGGGCACTGACCCGACCGAAGAGGCATAATGCT-CAAGCCAAGGATCAGCCC-G
63 AAACGAGCGTGCGGGCACTCAACCGGCCG-AGAGGCAGAATG-TGCAAGCCGAGGATCAGCCCGG
* * * ** *
13967043 TCCCCCTCTACGTGCT-GCCAGTCCCGTTGTCA
126 TCCCCC-CTACGTGCTATCGA-TCCCGCTACCG
* *
13967075 CAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAA
1 CAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CACGAA
* * * * *
13967140 ACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGTAGAATGTGCAAGCCGAAGATCGGCCTGGTTC
65 ACGAGCGTGCGGGCACTCAACCGGCC-GAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGTCC
* * * * *
13967205 CCCCTGCGTACT-GCTGATCCTGCTATCG
129 CCCCTACGTGCTATC-GATCCCGCTACCG
* * * ** *
13967233 TAACCCTCGATCCGATCT-GATCTTAGAC-TGGAATGAACTCGGTATGC
1 CAACCCTCGGTCCGGT-TGGGGCTTAGACATGGAATGAACTCCGTATGC
13967280 TTAGACTGCT
Statistics
Matches: 527, Mismatches: 120, Indels: 59
0.75 0.17 0.08
Matches are distributed among these distances:
155 16 0.03
156 91 0.17
157 171 0.32
158 238 0.45
159 11 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAA
CGAGCGTGCGGGCACTCAACCGGCCGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGTCCCC
CCTACGTGCTATCGATCCCGCTACCG
Found at i:13967330 original size:26 final size:25
Alignment explanation
Indices: 13967256--13967360 Score: 104
Period size: 26 Copynumber: 4.1 Consensus size: 25
13967246 GATCTGATCT
* *
13967256 TAGACTGGAATGAACTCGGTATGCT
1 TAGACTGGAATGAACTCCGTATGCC
* *
13967281 TAGACTGCTGAA-GAAGTCTGTATGCC
1 TAGACTG--GAATGAACTCCGTATGCC
* *
13967307 TAGACTGGGAATGAACTCCATATGCT
1 TAGACT-GGAATGAACTCCGTATGCC
*
13967333 TAGCCATGGAATGAACTCCGTATGCC
1 TAGAC-TGGAATGAACTCCGTATGCC
13967359 TA
1 TA
13967361 AGCCAACCCA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
25 10 0.15
26 50 0.77
27 5 0.08
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
TAGACTGGAATGAACTCCGTATGCC
Found at i:13967356 original size:52 final size:50
Alignment explanation
Indices: 13967256--13967360 Score: 122
Period size: 52 Copynumber: 2.0 Consensus size: 50
13967246 GATCTGATCT
** * *
13967256 TAGACTGGAATGAACTCGGTATGCTTAGACTGCTGAAGAAGTCTGTATGCC
1 TAGACTGGAATGAACTCCATATGCTTAGACTGC-GAAGAACTCCGTATGCC
*
13967307 TAGACTGGGAATGAACTCCATATGCTTAGCCATG-GAATGAACTCCGTATGCC
1 TAGACT-GGAATGAACTCCATATGCTTAGAC-TGCGAA-GAACTCCGTATGCC
13967359 TA
1 TA
13967361 AGCCAACCCA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
51 9 0.20
52 35 0.76
53 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (50 bp):
TAGACTGGAATGAACTCCATATGCTTAGACTGCGAAGAACTCCGTATGCC
Found at i:13967684 original size:157 final size:159
Alignment explanation
Indices: 13967337--13967757 Score: 403
Period size: 157 Copynumber: 2.7 Consensus size: 159
13967327 TATGCTTAGC
** * * *
13967337 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGTCGATCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTAAGCCGATCG
* * * * *
13967402 GGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCTTGCATGCTGTCAATCCTACTGT
66 GAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCTTACATGCTGCCAATCCCACTGC
** * * *
13967467 CGTAACCCTCAGTCCGGTCTGATCTTAGA
131 CACAACCCTCAGTCCAGTCTGAGCTTACA
* * *
13967496 C-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGTGTTAAGCCGATC
1 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTAAGCCGATC
* * * * * ** *
13967560 -GAAGAGGCATAATGCGCAAGTTGGGGATCGG-CCGGT-CCCTTCTACGTGCTGCCGGTCCCGCT
65 GGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCT-TACATGCTGCCAATCCCACT
*
13967622 GCCACAACCCTCAGTCCAG-CTGGGGCTTACA
129 GCCACAACCCTCAGTCCAGTCT-GAGCTTACA
* * *
13967653 CATGGAATGAACTCCCTCTGCCTAAGCCAACCCATGAAAC-AGGCG--CGTGAGCGCTCAA-CCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTACG-G-GTGCT-AAGCCG
* * * *
13967714 GTCGG-AGAGGTAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCC
62 ATCGGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCC
13967758 TCTGCGTGCT
Statistics
Matches: 211, Mismatches: 40, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
155 2 0.01
156 8 0.04
157 107 0.51
158 37 0.18
159 57 0.27
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTAAGCCGATCG
GAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCTTACATGCTGCCAATCCCACTGC
CACAACCCTCAGTCCAGTCTGAGCTTACA
Found at i:13967855 original size:26 final size:26
Alignment explanation
Indices: 13967805--13967857 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13967795 CCGGTCCGAT
**
13967805 CTTAGACTGGGAATAAACTTTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
13967831 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13967857 C
1 C
13967858 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13968563 original size:26 final size:26
Alignment explanation
Indices: 13968525--13968577 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13968515 GGCTCAAAAT
*
13968525 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
13968551 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
13968577 C
1 C
13968578 CTAAGCCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:13968841 original size:159 final size:159
Alignment explanation
Indices: 13968551--13968852 Score: 374
Period size: 159 Copynumber: 1.9 Consensus size: 159
13968541 ACTCCATATG
* * * * * * *
13968551 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAGCCCATGAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACATGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTGAGC
* * *** *
13968616 CGGTCGGAGAGGCAGAATGCGCAAGTTGGGGACCGACCCAGTCCCCTCCTGAATGCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCTCCTGAATGCTGCCGATCC
*
13968681 TGCTGCCACAACCTTTGATCCGGTTTGAT
131 TGCTACCACAACCTTTGATCCGGTTTGAT
* *
13968710 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATAAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTGAG
* * * ** *
13968774 CCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCC-CTCTGCGTGCTGCCGGT
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCTC-CTGAATGCTGCCGAT
13968838 CCTGCTACCACAACC
129 CCTGCTACCACAACC
13968853 CTCAGTCCAG
Statistics
Matches: 119, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 2 0.02
159 117 0.98
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTGAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCTCCTGAATGCTGCCGATCC
TGCTACCACAACCTTTGATCCGGTTTGAT
Found at i:13968969 original size:148 final size:146
Alignment explanation
Indices: 13968719--13968991 Score: 343
Period size: 148 Copynumber: 1.9 Consensus size: 146
13968709 TCTTAGACTG
* * *
13968719 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCGGCCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAGCCGGCCGAAG
* *
13968784 AGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCTGCTACCAC
66 AGG-ATAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCATGCTGCCGATCCTGCTACCAC
13968849 AACCCTCAGTCCAGACAT
129 AACCCTCAGTCCAGACAT
* * ** * ** * *
13968867 GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGTGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAGCCGGCCGAAG
* * *
13968932 AGG-TAGATGCGCAAGCC-GAGGATCGGCTCGGTCCCCCCTGCATGCTGTCGATCCTGCTAC
66 AGGATA-ATGCGCAAGCCAG-GGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCTGCTAC
13968992 TGGTCCTACT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
146 23 0.22
147 27 0.25
148 56 0.53
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (146 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAGCCGGCCGAAG
AGGATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCTGCTACCACAA
CCCTCAGTCCAGACAT
Found at i:13970346 original size:159 final size:158
Alignment explanation
Indices: 13969948--13970446 Score: 434
Period size: 159 Copynumber: 3.2 Consensus size: 158
13969938 TTCGTATGCG
* * ** * *
13969948 TAGACATGGAATGAACTCCGTATGCATAAGCCAACATACGAAACAAGTGTGCGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCG
* * * *
13970013 ACCGAAGAGGCAGAATGCACAAGCCGGGGAT-GGCTCGGTCCCCTCTGTGTGCTATCGATCCTAC
66 ACCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCAACCGATCCTAC
* * *
13970077 TGCCACAACCTTCGGTCCGATCTGATCT
131 TGCCACAACCCTCAGTCCGATCTGAGCT
* * * * ** ** * *
13970105 TAGAC-TGGGAATGAAATTCTTATGCCTAAGTCAACCCACGAAATTAGCGTATGGGCGCTGAGTC
1 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
** * * * * * *
13970169 GGTCGGATAGGCATAATGCTCTAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCAACCGATCGC
65 GACCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCAACCGATC-C
*
13970234 -ACTGCCACAACCCTCAGTCCGA-CTGGGGCT
128 TACTGCCACAACCCTCAGTCCGATCT-GAGCT
* * ** *
13970264 TAGACATGGAATGGACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCG
* * * ** * * * * *
13970329 ACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCTCTCTACGTGCTATCGATCCTGC
66 ACCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCAACCGATCCTAC
* * * *
13970394 TGCCGCAACCCTCGGTCCAGTTC-GATCT
131 TGCCACAACCCTCAGTCC-GATCTGAGCT
*
13970422 TAGAC-TGGGAATGAACTCCGTATGC
1 TAGACAT-GGAATGAACTCCCTATGC
13970447 TTAGACTATG
Statistics
Matches: 263, Mismatches: 69, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
156 1 0.00
157 73 0.28
158 67 0.25
159 119 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCG
ACCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCAACCGATCCTAC
TGCCACAACCCTCAGTCCGATCTGAGCT
Found at i:13971664 original size:158 final size:157
Alignment explanation
Indices: 13971176--13971764 Score: 544
Period size: 158 Copynumber: 3.7 Consensus size: 157
13971166 TGCTTAGGTG
* * * * * *
13971176 TGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC-AGCCGGA
* * * * * * * *
13971241 GAGGCAGAATGCGCAAG-TCGGGGATCAGTCC-AGTTCCCCTTGCGTGCTGTCGATCCTGCTACT
65 GAGGCAGAATGCACAAGCT-GGGGATC-GACCTGGTCCCCCCTGCGTGCTGCCGATCCCGCTACC
* ** * * *
13971304 GCAACCCTCAATCCGATCTGAT--CTTAGAC-
128 ACAACCCTCGGTCTG-GCTG-TGGCTTAAACA
* * * * * * * *
13971333 TGGGAATGAACTCCGTATGCATAAGTCAGCCCACAAAACGAGCGTGCGGGCGCTGAGCTGATCGA
1 T-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCAG-CCGG
* * * * * * * *
13971398 AAAAGCATAATGCACAAGCCGGGGATCGACCTGGTCCCACTCTGCGTGCTACTGGTCCCGCTACC
64 AGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCC-CCCTGCGTGCTGCCGATCCCGCTACC
* * *
13971463 ATAACCCTCGGT-TCGGCTGGGGCTTAAGCA
128 ACAACCCTCGGTCT-GGCTGTGGCTTAAACA
* * * *
13971493 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGTCAGCTGGA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG-CAGCCGGA
* * *
13971558 GAGGCAGAATGCGCAAGCTGGGGATCAGCCCT-GTCCCCCCGGCGTGCTGCCGATCCCGCTACCA
65 GAGGCAGAATGCACAAGCTGGGGATC-GACCTGGTCCCCCCTGCGTGCTGCCGATCCCGCTACCA
13971622 CAACCCTCGGTCTGGCTGTGGCTTAAACA
129 CAACCCTCGGTCTGGCTGTGGCTTAAACA
* * * * *
13971651 TGGAATGAACTCCCTATGACTAAGCCAACCCACAAAACGGGCATGCAGGGCGCTCAACCAACCGG
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGC-GGGCGCTC-AGCAGCCGG
*
13971716 AGAGGTAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCT
64 AGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCT
13971765 TTTGATCCTG
Statistics
Matches: 344, Mismatches: 73, Indels: 28
0.77 0.16 0.06
Matches are distributed among these distances:
157 5 0.01
158 171 0.50
159 160 0.47
160 8 0.02
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCAGCCGGAG
AGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCCCGCTACCACA
ACCCTCGGTCTGGCTGTGGCTTAAACA
Found at i:13971762 original size:317 final size:317
Alignment explanation
Indices: 13971176--13971764 Score: 715
Period size: 317 Copynumber: 1.9 Consensus size: 317
13971166 TGCTTAGGTG
* * ** *
13971176 TGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTAGCCAGA
* * ** * * **
13971241 GAGGCAGAATGCGCAAGTCGGGGATCAGTCCAGTTCCCCTTGCGTGCTGTCGATCCTGCTACTGC
66 GAGGCAGAATGCGCAAGTCGGGGATCAGCCCAGTCCCCCCGGCGTGCTGCCGATCCCGCTACCAC
* * * * *
13971306 AACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAGCCCACAAAA
131 AACCCTCAATCCGAGCTGATCTTAAACTGGGAATGAACTCCCTATGCATAAGCCAACCCACAAAA
* * * ** * *
13971371 CGAGCGTGCGGGCGCTGAGCTGATCGAAAAAGCATAATGCACAAGCCGGGGATCGACCTGGTCCC
196 CGAGCATGCGGGCGCTCAACCAACCGAAAAAGCAGAATGCACAAGCCGGGGATCGACCTGGTCCC
*
13971436 ACTCTGCGTGCTACTGGTCCCGCTACCATAACCCTCGGTTCGGCTGGGGCTTAAGCA
261 ACCCTGCGTGCTACTGGTCCCGCTACCATAACCCTCGGTTCGGCTGGGGCTTAAGCA
* **
13971493 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG-TCAGCTGG
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCT-AGCCAG
*
13971557 AGAGGCAGAATGCGCAAG-CTGGGGATCAGCCCTGTCCCCCCGGCGTGCTGCCGATCCCGCTACC
65 AGAGGCAGAATGCGCAAGTC-GGGGATCAGCCCAGTCCCCCCGGCGTGCTGCCGATCCCGCTACC
** *
13971621 ACAACCCTCGGTCTG-GCTG-TGGCTTAAACAT-GGAATGAACTCCCTATG-ACTAAGCCAACCC
129 ACAACCCTCAATCCGAGCTGAT--CTTAAAC-TGGGAATGAACTCCCTATGCA-TAAGCCAACCC
* * * * * *
13971682 ACAAAACGGGCATGCAGGGCGCTCAACCAACCGGAGAGGTAGAATGCACAAGCTGGGGATCGACC
190 ACAAAACGAGCATGC-GGGCGCTCAACCAACCGAAAAAGCAGAATGCACAAGCCGGGGATCGACC
13971747 TGGTCCC-CCCTGCGTGCT
254 TGGTCCCACCCTGCGTGCT
13971765 TTTGATCCTG
Statistics
Matches: 226, Mismatches: 39, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
315 1 0.00
316 6 0.03
317 173 0.77
318 46 0.20
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (317 bp):
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTAGCCAGA
GAGGCAGAATGCGCAAGTCGGGGATCAGCCCAGTCCCCCCGGCGTGCTGCCGATCCCGCTACCAC
AACCCTCAATCCGAGCTGATCTTAAACTGGGAATGAACTCCCTATGCATAAGCCAACCCACAAAA
CGAGCATGCGGGCGCTCAACCAACCGAAAAAGCAGAATGCACAAGCCGGGGATCGACCTGGTCCC
ACCCTGCGTGCTACTGGTCCCGCTACCATAACCCTCGGTTCGGCTGGGGCTTAAGCA
Found at i:13971821 original size:159 final size:156
Alignment explanation
Indices: 13971176--13971829 Score: 503
Period size: 159 Copynumber: 4.1 Consensus size: 156
13971166 TGCTTAGGTG
* * * * * *** *
13971176 TGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGA
1 TGGAATGAACTCCCTATG-CTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCAACCGGA
* * * * * * * *
13971241 GAGGCAGAATGCGCAAG-TCGGGGATCAGTCC-AGTTCCCCTTGCGTGCTGTCGATCCTGCTACT
65 GAGGCAGAATGCACAAGCT-GGGGATC-GACCTGGTCCCCCCTGCGTGCTGCCGATCCCGCTACC
* * *
13971304 GCAACCCTCAATCCGATCTGATCTTAGAC-
128 ACAACCCTCGATCCG-GCTGATCTTAGACA
* * * * * ** * *
13971333 TGGGAATGAACTCCGTATGCATAAGTCAGCCCACAAAACGAGCGTGCGGGCGCTGAGCTGATCGA
1 T-GGAATGAACTCCCTATGC-TAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCAACCGG
* * * * * * * *
13971398 AAAAGCATAATGCACAAGCCGGGGATCGACCTGGTCCCACTCTGCGTGCTACTGGTCCCGCTACC
64 AGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCC-CCCTGCGTGCTGCCGATCCCGCTACC
* * * **
13971463 ATAACCCTCGGTTCGGCTGGGGCTTA-AGCA
128 ACAACCCTCGATCCGGCT-GATCTTAGA-CA
* * * * *
13971493 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGTCAGCTGGA
1 TGGAATGAACTCCCTATG-CTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCAACCGGA
* * *
13971558 GAGGCAGAATGCGCAAGCTGGGGATCAGCCCT-GTCCCCCCGGCGTGCTGCCGATCCCGCTACCA
65 GAGGCAGAATGCACAAGCTGGGGATC-GACCTGGTCCCCCCTGCGTGCTGCCGATCCCGCTACCA
* * *
13971622 CAACCCTCGGTCTGGCTG-TGGCTTAAACA
129 CAACCCTCGATCCGGCTGAT--CTTAGACA
* *
13971651 TGGAATGAACTCCCTATGACTAAGCCAACCCACAAAACGGGCATGCAGGGCGCTCAACCAACCGG
1 TGGAATGAACTCCCTATG-CTAAGCCAACCCACAAAACGGGCGTGC-GGGCGCTCAGCCAACCGG
* *** * * *
13971716 AGAGGTAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTTTTGATCCTGCTGCCG
64 AGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCCCGCTACCA
* * *
13971781 TAACCCTCGATCCGATCCGATCTTAGAC-
129 CAACCCTCGATCCG-GCTGATCTTAGACA
* *
13971809 TGAGAATAAACTCCGTATGCT
1 TG-GAATGAACTCCCTATGCT
13971830 TAGATTGGGG
Statistics
Matches: 390, Mismatches: 89, Indels: 35
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 172 0.44
159 203 0.52
160 8 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
TGGAATGAACTCCCTATGCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCAACCGGAG
AGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCCCGCTACCACA
ACCCTCGATCCGGCTGATCTTAGACA
Found at i:13972502 original size:196 final size:196
Alignment explanation
Indices: 13972103--13972525 Score: 525
Period size: 196 Copynumber: 2.2 Consensus size: 196
13972093 GATCGACTCG
* ** *
13972103 GTCCCCCCTGTGTGCTGTCGATCCTGCTGTTGGTCCTGCTGCCACAACCCTCGATCCGATCTAAT
1 GTCCCCCCTGTGTGCTGTCGATCCTACTACTGGTCCTGCTACCACAACCCTCGATCCGATCTAAT
* * * * *
13972168 TTTAGATTGGGAATGAACTCTGTATGCTTAGACATGGAAGGAACTCCGTATGCGTAAGCCAACCC
66 CTTAGACTGGGAATGAACTCTATATGCTTAGACATGAAAGGAACTCCGTATGCCTAAGCCAACCC
* * *
13972233 ACAAAATGAGCGTACGGGTGCTCAACTGGCCGGAGAGGCAGAAAGTGTAAGCCGAGGATCAGCCC
131 ACAAAATGAGCGTACGGGTGCTCAACCGGCCGGAGAGGCAGAAAGGGCAAGCCGAGGATCAGCCC
13972298 A
196 A
* * * * *
13972299 GTCCCCCCTGTGTGCTATCAATCCTACTACTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGAT
1 GTCCCCCCTGTGTGCTGTCGATCCTACTACTGGTCCTGCTACCACAACCCTCGATCCGATCTAAT
*
13972364 CTTAGACTGGGAATGAACT-TCATATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
66 CTTAGACTGGGAATGAACTCT-ATATGCTTAGACATGAAAGGAACTCCGTATGCCTAAGCCAACC
** * *
13972428 CATGAAATGA-C-TATGCGGGTGCTCAACCGGCCGGAGAGGCGGAATGGGCAAGCC-AGGGATC-
130 CACAAAATGAGCGTA--CGGGTGCTCAACCGGCCGGAGAGGCAGAAAGGGCAAGCCGA-GGATCA
* *
13972489 GGCCT
192 GCCCA
13972494 GATCCCCCCCT-TCGTGCTGTCGATCCTACTAC
1 G-T-CCCCCCTGT-GTGCTGTCGATCCTACTAC
13972526 CGTAACCCTC
Statistics
Matches: 194, Mismatches: 26, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
194 2 0.01
195 7 0.04
196 161 0.83
197 24 0.12
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (196 bp):
GTCCCCCCTGTGTGCTGTCGATCCTACTACTGGTCCTGCTACCACAACCCTCGATCCGATCTAAT
CTTAGACTGGGAATGAACTCTATATGCTTAGACATGAAAGGAACTCCGTATGCCTAAGCCAACCC
ACAAAATGAGCGTACGGGTGCTCAACCGGCCGGAGAGGCAGAAAGGGCAAGCCGAGGATCAGCCC
A
Found at i:13972907 original size:26 final size:26
Alignment explanation
Indices: 13972866--13972918 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13972856 TTGGTCTGAT
13972866 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAATGAACGT-CGTATG
13972892 CTTAGACTAGGG-ATGAACGTCGTATG
1 CTTAGACT-GGGAATGAACGTCGTATG
13972918 C
1 C
13972919 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGTCGTATG
Found at i:13980030 original size:158 final size:157
Alignment explanation
Indices: 13979542--13980043 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 157
13979532 ACTCTGTATG
* *
13979542 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
* * * * * * *
13979607 CGACAGGAGAGGCAGAATGCGTAAGTCAGGGATCGACCCAATCCCCCTCTGCGTACTGTCGGTCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGGCCC
* * *
13979672 TACTGCCATAACCCTCGGTCTGGTCCGAT
130 TGCTGCCACAACCCTCAGTCT-GTCCGAT
* * * * * * * * *
13979701 CCTAGAC-TGGGAATGAACTTCAT-TCGCATAAGTCAACCCACGAAATGAGCGTATGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTAT-GCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCA
* * * ** *
13979764 GCCAACC-GA-ATGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCTTTTGTGTGCTGTCGG
64 GCCGACCGGAGA-GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC-CCTGCGTGCTGTCGG
* * * **
13979827 -TCTCGCTGCCACAACCCTCAGT-TCGGCTGGGG
127 CCCT-GCTGCCACAACCCTCAGTCT-GTC-CGAT
* * * * *
13979859 CTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATACGGGCTCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTACGGGCACTCAG
* * *
13979923 CCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTG-CGGACC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGG-CC
**
13979987 CTGCTGCTGCAACCCTCAGTCCTGTCCGAT
129 CTGCTGCCACAACCCTCAGT-CTGTCCGAT
13980017 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
13980044 TTAGACTGGA
Statistics
Matches: 264, Mismatches: 63, Indels: 33
0.73 0.17 0.09
Matches are distributed among these distances:
157 11 0.04
158 158 0.60
159 93 0.35
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGGCCCT
GCTGCCACAACCCTCAGTCTGTCCGAT
Found at i:13980046 original size:26 final size:26
Alignment explanation
Indices: 13980017--13980069 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13980007 CCTGTCCGAT
13980017 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
13980043 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
13980069 C
1 C
13980070 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:13980692 original size:342 final size:342
Alignment explanation
Indices: 13980044--13980696 Score: 834
Period size: 342 Copynumber: 1.9 Consensus size: 342
13980034 CTCCGTATGC
* * *
13980044 TTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCAGGCGCTCAGTC
1 TTAGACTGGAGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGGGCAGGCACTCAATC
* *
13980109 GGCCGTAGAGGCCGATCAAAGAGGCATAATGCACAATCCAGGGATCAGCCCGGTCCCCCTCTGCG
66 GGCCATAGAGGCCGATCAAAGAGGCATAATGCACAATCCAGGGATCAGCCCGATCCCCCTCTGCG
* * *
13980174 TGCTACTAATCCCGCTGCCGGTATTGCCGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
131 TGCTACTAATCCCACTGCCGGTATTGCCGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGA
* * * * ** *
13980239 ATGAACTCCGTTTGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAGTCGACCGGAGAGG
196 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCAGAGAGG
* * * *
13980304 CAGAATGCGCAAGTCGGAGATCGATCCGGTACCCCCTGCATGCTGTCGATCTTGTTGTCGCAACC
261 CAAAATGCGCAAGCCCGAGATCGAGCCGGTACCCCCTGCATGCTGTCGATCTTGTTGTCGCAACC
13980369 CTCGGTCCGGTCCAATG
326 CTCGGTCCGGTCCAATG
** *
13980386 TTAGACTGG-GAATGAACTTTGTATGCCTAAATCAACCCACGAAACGAGCGTGC-GAGCACTCAA
1 TTAGACTGGAG-ATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGGGCAG-GCACTCAA
* * * *
13980449 TCGGCCATAGAGGCCGATCGAAGAGGCATAATGTACAAGT-CAGGGATCAGCCCGATCCCTCTTT
64 TCGGCCATAGAGGCCGATCAAAGAGGCATAATGCACAA-TCCAGGGATCAGCCCGATCCCCCTCT
* ** * * **
13980513 GCGTGCTA-TCGATCCCACTGTTGGTCTTGCTGCCACAACCCTCAGTCCGGTTAGGGCTTAGACA
128 GCGTGCTACT-AATCCCACTGCCGGTATTGCCGCCACAACCCTCAGTCCGACTAGGGCTTAGACA
* * * *
13980577 TGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAGCGTGCGGGCACTCAACCGGCCAGA
192 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCAGA
* * *
13980642 GAGGCAAAATGTGCAAGCCACGA-ATTG-GCCTGGT-CCCTCCTGCGTGCTGTCGATC
257 GAGGCAAAATGCGCAAGCC-CGAGATCGAGCC-GGTACCC-CCTGCATGCTGTCGATC
13980697 CTGTGCTGGT
Statistics
Matches: 264, Mismatches: 40, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
341 8 0.03
342 253 0.96
343 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (342 bp):
TTAGACTGGAGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGGGCAGGCACTCAATC
GGCCATAGAGGCCGATCAAAGAGGCATAATGCACAATCCAGGGATCAGCCCGATCCCCCTCTGCG
TGCTACTAATCCCACTGCCGGTATTGCCGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCAGAGAGG
CAAAATGCGCAAGCCCGAGATCGAGCCGGTACCCCCTGCATGCTGTCGATCTTGTTGTCGCAACC
CTCGGTCCGGTCCAATG
Found at i:13981227 original size:524 final size:531
Alignment explanation
Indices: 13980226--13981401 Score: 1462
Period size: 524 Copynumber: 2.2 Consensus size: 531
13980216 TCCGACTGGG
* *
13980226 GCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* *
13980291 TCGACCGGAGAGGCAGAATGCGCAAGTCGGAGATCGATCCGGTACCCCCTGCATGCTGTCGATCT
66 TCGACCGGAGAGGCAGAATGCACAAGTCGGAGATCGATCCGGTACCCCCTGCATGCTGTCGATCC
** ** * ** *
13980356 TGTTGTCGCAACCCTCGGTCCGGTCCAATGTTAGACTGGGAATGAACTTTGTATGCCTAAATCAA
131 TACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAA
* *
13980421 CCCACGAAACGAGCGTGCGAGCACTCAATCGGCCATAGAGGCCGATCGAAGAGGCATAATGTACA
196 CCCACGAAACGAGCGTGCGAG--CGC-AT---CCATAGAGGCCGATCGAAGAGGCATAATGCACA
* * * *** *
13980486 AGTCAGGGATCAGCCCGATCCCTCTTTGCGTGCTATCGATCCCACTGTTGGTCTTGCTGCCACAA
255 AGCCAGGGATCAGCCCGATCCCTCTCTACGTGCTATCGATCCCACTACCGGTCCTGCTGCCACAA
** * * * **
13980551 CCCTCAGTCCGGTTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATG
320 CCCTCAGTCCGACTAGGGCTTAGAAATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACA
* * * * * *
13980616 AGCGTGCGGGCACTCAACCGGCCAGAGAGGCAAAATGTGCAAGCCACGAATTGGCCTGGTCCCTC
385 AGCGTGCAGCCACTCAACCGACCAGAGAGGCAAAATGCGCAAGCCACGAATTGGCCCGATCCCTC
* **
13980681 CTGCGTGCTGTCGATCCTGTGCTGGTCCTGCTATTACAACCCTTGGTCCAGTCCGATCT-TAGAC
450 CTACGTGCTGTCGATCCTGTGCTGGTCCTGCTACCACAACCCTTGGTCCAGTCCGAT-TATAGAC
13980745 TGGGAATGAACTCCGTAT
514 TGGGAATGAACTCCGTAT
* * * * *
13980763 GCTTAGACATCGAATGAACTCCGTATGCCTCAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * * *
13980828 CCGACCGGAGAGGCAGAATGCACAAGTC-GAGGATCG-GCTCTGT-CCCAGCTGCGTGCTGTTGA
66 TCGACCGGAGAGGCAGAATGCACAAGTCGGA-GATCGATC-CGGTACCC-CCTGCATGCTGTCGA
*
13980890 TCCTACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
128 TCCTACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAAT
* * * **
13980955 CAACCCATGAGACGAGCGTGC-AG-GC-T-C-T-GA-GCCGATCGGAGAGGCATAATGCGTAAGC
193 CAACCCACGAAACGAGCGTGCGAGCGCATCCATAGAGGCCGATCGAAGAGGCATAATGCACAAGC
* * * *
13981013 C-GAGGATCGGCTCGATCCCTCTCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCACAACC
258 CAG-GGATCAGCCCGATCCCTCTCTACGTGCTATCGATCCCACTACCGGTCCTGCTGCCACAACC
* * *
13981077 CTCGGTCCGACTGGGGCTTAGAAATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAAG
322 CTCAGTCCGACTAGGGCTTAGAAATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACAAG
* * * * *
13981142 TGTGCAGCCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGATCCC-CCT
387 CGTGCAGCCACTCAACCGACCAGAGAGGCAAAATGCGCAAGCCACGAATTGGCCCGATCCCTCC-
*
13981206 TACGTGCTGTCGATCCTGTGCTGGTCCTGCTGCCACAACCCTTGGTCCAGTCCGATTATAGACTG
451 TACGTGCTGTCGATCCTGTGCTGGTCCTGCTACCACAACCCTTGGTCCAGTCCGATTATAGACTG
13981271 GGAATGAACTCCGTAT
516 GGAATGAACTCCGTAT
* * * * *
13981287 GCCTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGGGTGTGAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * *
13981352 TCGACCGAAGAGGCAGAATGCTCAAGTCGGAGATCGA-CTCGGTGCCCCCT
66 TCGACCGGAGAGGCAGAATGCACAAGTCGGAGATCGATC-CGGTACCCCCT
13981402 ACGTGCTACC
Statistics
Matches: 548, Mismatches: 82, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
523 4 0.01
524 347 0.63
525 7 0.01
526 1 0.00
527 1 0.00
531 1 0.00
533 1 0.00
536 8 0.01
537 178 0.32
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (531 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCACAAGTCGGAGATCGATCCGGTACCCCCTGCATGCTGTCGATCC
TACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAA
CCCACGAAACGAGCGTGCGAGCGCATCCATAGAGGCCGATCGAAGAGGCATAATGCACAAGCCAG
GGATCAGCCCGATCCCTCTCTACGTGCTATCGATCCCACTACCGGTCCTGCTGCCACAACCCTCA
GTCCGACTAGGGCTTAGAAATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACAAGCGTG
CAGCCACTCAACCGACCAGAGAGGCAAAATGCGCAAGCCACGAATTGGCCCGATCCCTCCTACGT
GCTGTCGATCCTGTGCTGGTCCTGCTACCACAACCCTTGGTCCAGTCCGATTATAGACTGGGAAT
GAACTCCGTAT
Found at i:13981290 original size:169 final size:170
Alignment explanation
Indices: 13980901--13981291 Score: 466
Period size: 171 Copynumber: 2.3 Consensus size: 170
13980891 CCTACTACCG
* * * * *
13980901 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAG
1 CAACCCTCGGTCCAGTCCGAT-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * * * * * *
13980966 ACGAGCGTGCAGGCTCTGAGCCGATCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCTCGATCC
65 ACAAGCGTGCAGCCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCC
*
13981031 CTCTCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCA
130 CCCTCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCA
* ** ** * *
13981072 CAACCCTCGGTCCGACTGGGGCTTAGAAAT-GGAATGAAATCCGTATGCCTAAGCCAACCCATGA
1 CAACCCTCGGTCC-AGTCCGATTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* *
13981136 AACAAGTGTGCAGCCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCC-ACGGATTGGCCCGAT
64 AACAAGCGTGCAGCCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGAT
* * *
13981200 CCCCCT-TACGTGCTGTCGATCCTG-TGCTGGTCCTGCTGCCA
128 CCCCCTCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCA
*
13981241 CAACCCTTGGTCCAGTCCGATTATAGACTGGGAATGAACTCCGTATGCCTA
1 CAACCCTCGGTCCAGTCCGATT-TAGACTGGGAATGAACTCCGTATGCCTA
13981292 GACATGGAAT
Statistics
Matches: 181, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
168 6 0.03
169 50 0.28
170 18 0.10
171 104 0.57
172 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (170 bp):
CAACCCTCGGTCCAGTCCGATTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
CAAGCGTGCAGCCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCC
CCTCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGCCA
Found at i:13981813 original size:12 final size:12
Alignment explanation
Indices: 13981798--13981828 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
13981788 GCTGTCGATT
13981798 CTGCTACTAGTC
1 CTGCTACTAGTC
13981810 CTGCTACTAGTC
1 CTGCTACTAGTC
13981822 CTGCTAC
1 CTGCTAC
13981829 CACAACACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.35, G:0.16, T:0.32
Consensus pattern (12 bp):
CTGCTACTAGTC
Found at i:13981890 original size:26 final size:26
Alignment explanation
Indices: 13981852--13981904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13981842 TTGGTCTGAT
13981852 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13981878 CTTAGAC-GTGGAATGAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
13981904 C
1 C
13981905 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13982944 original size:159 final size:158
Alignment explanation
Indices: 13982550--13982950 Score: 382
Period size: 159 Copynumber: 2.5 Consensus size: 158
13982540 AACTCGATAT
* * *
13982550 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
13982615 CCAGCCGGAGAGGCAGAATGCGTAAGTCGGGGACTGATCCGATCCCCCCTACGTGCTGTCTATCC
66 CCAGCCAGAAAGGCAGAATGCGTAAGCCGGGGACGGATCCGATCCCCCCTACATGCTGTCTATCC
* **
13982680 TGCTGTCACAATCCTCGATTTGGTCTGA
131 TGCTGCCACAATCCTCGATCCGGTCTGA
* * * * * * * *
13982708 TCTTAGAC-TGGGAATGAACTCCGTAGGCCAAAGTCAACCCATGAAATGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * ** **
13982772 GCCGATCGA-AAAGGCATAATGCGTAAGCCGGGGATCGGCT-CGGTCCCGTTCTGTATGCTGT-T
65 GCC-AGCCAGAAAGGCAGAATGCGTAAGCCGGGGA-CGGATCCGATCCC-CCCTACATGCTGTCT
* * *
13982834 GGTCCTGCTGCCACAA-CCTTCGGTCCGG-CTGGG
127 -ATCCTGCTGCCACAATCC-TCGATCCGGTCT-GA
* * * *
13982867 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
13982932 CCAGCCAGAAAGGCAGAAT
66 CCAGCCAGAAAGGCAGAAT
13982951 ACGCAAGCTA
Statistics
Matches: 188, Mismatches: 46, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.01
158 90 0.48
159 96 0.51
160 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCAGCCAGAAAGGCAGAATGCGTAAGCCGGGGACGGATCCGATCCCCCCTACATGCTGTCTATCC
TGCTGCCACAATCCTCGATCCGGTCTGA
Found at i:13983800 original size:26 final size:26
Alignment explanation
Indices: 13983748--13983800 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13983738 GGCTTAAAAT
*
13983748 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
13983774 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
13983800 C
1 C
13983801 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:13983983 original size:26 final size:26
Alignment explanation
Indices: 13983932--13983984 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13983922 CCAGTCCGAT
**
13983932 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
13983958 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
13983984 C
1 C
13983985 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:13984363 original size:26 final size:26
Alignment explanation
Indices: 13984312--13984364 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13984302 CTGATCCGAT
* *
13984312 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCTATATG
13984338 CTTAGACAAGGAATGAACT-TCATATG
1 CTTAGACAAGGAATGAACTCT-ATATG
13984364 C
1 C
13984365 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCTATATG
Found at i:13984841 original size:26 final size:26
Alignment explanation
Indices: 13984812--13984863 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13984802 TGGTCTGATA
*
13984812 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13984838 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13984864 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13985038 original size:26 final size:26
Alignment explanation
Indices: 13985009--13985059 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13984999 GGTCTGATCT
13985009 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
* *
13985035 TAGATTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
13985060 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:13985059 original size:196 final size:196
Alignment explanation
Indices: 13984725--13985095 Score: 548
Period size: 196 Copynumber: 1.9 Consensus size: 196
13984715 CAGTCGATCA
* *
13984725 GAGAGGCAGAATGCACAAGTCGAGGATCAGCCCGGTCCCCCTTGCATGCTGCCGATCCTACTGTC
1 GAGAGGCAGAATGCACAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTACTGTC
* * *
13984790 GCAACCCTCAGCTGGTCTGATATTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
66 GCAACCCTCAGCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCATAGACTGGGAATGAAC
** *
13984855 TCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCACTCAGTCGGCCAGAGAGGTCAGCT
131 TCCGTATGCCTAAGTCAACCCAAAAAACAAGCATGCAGGCACTCAGTCGGCCAGAGAGGTCAGCT
13984920 G
196 G
* * * *
13984921 GAGAGGCAGAATGCACAAG-CTGAGGATCGGCTCGATCCCCCCTGCATGCTGCTGGTCC-ACTGT
1 GAGAGGCAGAATGCACAAGTC-GAGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTACTGT
* * * *
13984984 CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGATTGGGGATGA
65 CGCAACCCTC-AGCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCATAGACTGGGAATGA
* *
13985049 ACTCCGTATGCCTAAGTCAACCCAAAAAATAAGCATGCAGGCGCTCA
129 ACTCCGTATGCCTAAGTCAACCCAAAAAACAAGCATGCAGGCACTCA
13985096 ACCGGTCGGA
Statistics
Matches: 155, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
195 16 0.10
196 139 0.90
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (196 bp):
GAGAGGCAGAATGCACAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTACTGTC
GCAACCCTCAGCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCATAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCAAAAAACAAGCATGCAGGCACTCAGTCGGCCAGAGAGGTCAGCT
G
Found at i:13985360 original size:171 final size:171
Alignment explanation
Indices: 13985045--13985361 Score: 366
Period size: 171 Copynumber: 1.9 Consensus size: 171
13985035 TAGATTGGGG
* *
13985045 ATGAACTCCGTATGCCTAAGTCAACCCAAAAAATAAGCATGCAGGCGCTCAACCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCAAAAAATAAGCATGCAGGCGCTCAACCAGTCGGAGAGG
* * * * * * *
13985110 CATAACACATAAGTCGGGGATCAACCTGGTCCCCCTCTGCGTGCTACCGATCCCGCTGTCGGTCC
66 CAGAACACACAAGCCAGGGATCAACCCGATCCCCCCCTGCGTGCTACCGATCCCGCTGTCGGTCC
*
13985175 TACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGA
131 TACTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGA
* ** * * **
13985216 ATGAACTCTGTATGCCTAAGCCAACCCATGAAATAAGCATGCGGGTGCTCAGTCAGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCAAAAAATAAGCATGCAGGCGCTCAACCAGTCGGAGAGG
* ** * * * * * *
13985281 TAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGGTGCCGATCCTGTTG-CTGGTC
66 CAGAACACACAAGCCAGGGATCAACCCGATCCCCCCCTGCGTGCTACCGATCCCGCTGTC-GGTC
* *
13985345 CTGCTACCGCAACCCTC
130 CTACTACCACAACCCTC
13985362 AATCTTAGAC
Statistics
Matches: 117, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
170 1 0.01
171 116 0.99
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCAAAAAATAAGCATGCAGGCGCTCAACCAGTCGGAGAGG
CAGAACACACAAGCCAGGGATCAACCCGATCCCCCCCTGCGTGCTACCGATCCCGCTGTCGGTCC
TACTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGA
Found at i:13985409 original size:26 final size:26
Alignment explanation
Indices: 13985391--13985441 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13985381 ACTCTGTTTG
13985391 CTTAGACATGGAATAAACTCAGTATT
1 CTTAGACATGGAATAAACTCAGTATT
*
13985417 CTTAGACATGGAATAAACTCCGTAT
1 CTTAGACATGGAATAAACTCAGTAT
13985442 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCAGTATT
Found at i:13986114 original size:26 final size:26
Alignment explanation
Indices: 13986076--13986128 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13986066 CTGGTCTGAT
13986076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13986102 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13986128 C
1 C
13986129 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13986920 original size:26 final size:26
Alignment explanation
Indices: 13986882--13986934 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13986872 GGCTTAAACT
*
13986882 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
13986908 CTTAGACAT-GGAATGAACTTCGCATG
1 CTTAGAC-TGGGAATGAACTTCGCATG
13986934 C
1 C
13986935 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:13987251 original size:26 final size:26
Alignment explanation
Indices: 13987222--13987274 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13987212 CCGATTCGAT
* *
13987222 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAAACTGGGAAAGAACTCCGTATG
* *
13987248 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAAAGAACTCCGTATG
13987274 C
1 C
13987275 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAAAGAACTCCGTATG
Found at i:13987962 original size:26 final size:26
Alignment explanation
Indices: 13987933--13987985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13987923 CCGATCCGAT
13987933 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13987959 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13987985 C
1 C
13987986 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13988286 original size:183 final size:183
Alignment explanation
Indices: 13987774--13988326 Score: 605
Period size: 184 Copynumber: 3.0 Consensus size: 183
13987764 TCCGGCTGGG
* * * * *
13987774 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
13987839 CCGGCCGGAGAGGTAGAATACACAA-TCCAGAGATCGACCTGGTCCCCCATACGTGCTATCGATC
65 CCGGCCGGAGAGGTAGAATGCGCAAGT-CGGGGATCGACCCGATCCCCCATACGTGCTATCGATC
*
13987903 CTACTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
129 CTACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * **
13987958 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCACTCA
** * * * * * * **
13988022 GCCGATCGAAGAGGCAGAATGTGCAAG-CTGGGGATTGGCTCGATCCCCCATACGTGCTGCCGAT
64 GCCGGCCGGAGAGGTAGAATGCGCAAGTC-GGGGATCGACCCGATCCCCCATACGTGCTATCGAT
* * * *
13988086 CCTGCTGCTGCAACCCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCCGTAT
128 CCTACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
13988142 G-TTTGACATGGAATAAACTCCGTATGCCTAAGCGAACCCATGAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
13988206 CTGGCCGGAGAGGTAGAATGCGCAAGTCGGGGACCGACCCGATGGCCCC-TGCTTGCTATCGATC
65 CCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGAT-CCCCCATACGTGCTATCGATC
* * * *
13988270 CTACTGCCGCAACCCTC-AGTCCGATCTGATCTTATACTGAGAATGAACTCCATAT
129 CTACTGCCGCAACCCTCGA-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
13988325 GC
1 GC
13988327 CTAAGTTCAC
Statistics
Matches: 298, Mismatches: 62, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
182 2 0.01
183 141 0.47
184 155 0.52
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCATACGTGCTATCGATCCT
ACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:13988647 original size:26 final size:26
Alignment explanation
Indices: 13988611--13988669 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
13988601 CTCGATCAGG
*
13988611 TCCG-ATG-TTAGATTGGGAATAAAC
1 TCCGTATGCTTAGACTGGGAATAAAC
* *
13988635 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTGGGAATAAAC
13988661 TCCGTATGC
1 TCCGTATGC
13988670 ATAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATAAAC
Found at i:13990229 original size:26 final size:26
Alignment explanation
Indices: 13990191--13990243 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13990181 GGCTCAAACT
13990191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13990217 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13990243 C
1 C
13990244 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13990768 original size:25 final size:26
Alignment explanation
Indices: 13990731--13990782 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
13990721 CCGGTTTGAT
13990731 CTTAGACTAGGAATGAAC-TCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
13990756 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
13990782 C
1 C
13990783 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 1 0.04
25 16 0.64
26 8 0.32
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:13992108 original size:26 final size:26
Alignment explanation
Indices: 13992079--13992131 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13992069 CTGGTCCGAT
13992079 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
13992105 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13992131 C
1 C
13992132 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13992300 original size:26 final size:26
Alignment explanation
Indices: 13992262--13992314 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13992252 CCGATCCGAT
13992262 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
13992288 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
13992314 C
1 C
13992315 CCAAGCCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:13992519 original size:377 final size:382
Alignment explanation
Indices: 13992017--13992726 Score: 972
Period size: 377 Copynumber: 1.9 Consensus size: 382
13992007 CGGCCTAATC
* * *
13992017 CCCCCTGCGTGCTGTCGATCCTGCTGCTAGTCCTGCTACCGTAACCCTCTGTCTGGTCCGATCTT
1 CCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGCTACCGTAACCCTCTGTCTGGTCCGATCTT
*
13992082 AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
66 AGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * *
13992147 AAACGAGCGTACGGGTG-CTCAGCCGGCCGGAAAGGCAGAATGC-GCAAG-CTGGGGATC-GCCC
131 AAACGAGCGTACAGGTGTCT-AGCCAGCCAGAAAGACAGAAT-CTGCAAGTC-GGGGACCAGCCC
* * *
13992208 GATCCCTCCTGTGTGCTGTCGGTCCTA-CTGC-C-ACAACCCTCGATCCGA-TCCGATCTTAGAC
193 GATCCCCCCTCTGTGCTGTCGATCCTACCTGCGCTACAACCCTCGAT-CGAGTCCGATCTTAGAC
*
13992269 TAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCCAAGCCTACCCATGAAAC
257 TAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACCCATGAAAC
13992334 GAGCATGCAGGCACTCGATCGATCGAAGAGGTAGAACACGTCAGCCGGGGATCGACTCGAT
322 GAGCATGCAGGCACTCGATCGATCGAAGAGGTAGAACACGTCAGCCGGGGATCGACTCGAT
* * * *
13992395 CCCCCTGCATGCTGTCGATCTTACTATTGGTCCTGCTACCGTAA-CCT-TGATCTGGTTCGATCT
1 CCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGCTACCGTAACCCTCTG-TCTGGTCCGATCT
*
13992458 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
65 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * ** *
13992523 GAAACGAGCGTGCAGGTGTCTAGCCAGCCAGAGAGACAGAATCTGTAAGTCGGGGACCAGTTCGG
130 GAAACGAGCGTACAGGTGTCTAGCCAGCCAGAAAGACAGAATCTGCAAGTCGGGGACCAGCCCGA
* *
13992588 TCCCCCCTCTGTGCTGTCGATCCTACTGCTGTCCTGCTGCTGCAACCCTCGATCTAGTCCGATCT
195 TCCCCCCTCTGTGCTGTCGATCCTA-------CCTGC-GCTACAACCCTCGATCGAGTCCGATCT
* * *
13992653 TAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCAT
252 TAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACCCAT
13992718 GAAACGAGC
317 GAAACGAGC
13992727 GTTCAGGCGC
Statistics
Matches: 286, Mismatches: 29, Indels: 23
0.85 0.09 0.07
Matches are distributed among these distances:
376 3 0.01
377 121 0.42
378 66 0.23
386 4 0.01
388 3 0.01
389 89 0.31
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (382 bp):
CCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGCTACCGTAACCCTCTGTCTGGTCCGATCTT
AGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTACAGGTGTCTAGCCAGCCAGAAAGACAGAATCTGCAAGTCGGGGACCAGCCCGAT
CCCCCCTCTGTGCTGTCGATCCTACCTGCGCTACAACCCTCGATCGAGTCCGATCTTAGACTAGG
AATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACCCATGAAACGAGC
ATGCAGGCACTCGATCGATCGAAGAGGTAGAACACGTCAGCCGGGGATCGACTCGAT
Found at i:13992684 original size:195 final size:194
Alignment explanation
Indices: 13992241--13992742 Score: 552
Period size: 194 Copynumber: 2.6 Consensus size: 194
13992231 CCTACTGCCA
* *
13992241 CAACCCTCGATC-CGATCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAA
1 CAACCCTCGATCTAG-TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAA
* * * * * * * **
13992305 CTTCGTATGCCCAAGCCTACCCATGAAACGAGCATGCAGGCACTCGATCGATCGAAGAGGTAGAA
65 CTT-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCGAGCCAGCCAAGAGACAGAA
* * * *
13992370 CACGTCAGCCGGGGATCGACTCGATCCCCCTGCATGCTGTCGATCTTACTATTGGTCCTGCTACC
129 CACGTAAGCCGGGGACCGACTCGATCCCCCTGCATGCTGTCGATCCTACTACTGGTCCTGCTACC
13992435 G
194 G
* * * * **
13992436 TAA-CCTTGATCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
1 CAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
* ** *
13992500 TCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGG-TGTCTAGCCAGCCAGAGAGACAGAA
66 T-TGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCGAGCCAGCCA-AGAGACAGAA
* * * * * *
13992564 TC-TGTAAGTCGGGGACC-AGTTCGGTCCCCCCT-CTGTGCTGTCGATCCTACTGCT-GTCCTGC
129 -CACGTAAGCCGGGGACCGA-CTCGAT-CCCCCTGC-ATGCTGTCGATCCTACTACTGGTCCTGC
* *
13992625 TGCTG
190 TACCG
13992630 CAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
* *
13992695 TTTGTATGCCTAAGCCAACCCATGAAACGAGCGTTCAGGCGCT-GAGCC
66 -TTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCGAGCC
13992743 GACCGGAGAG
Statistics
Matches: 254, Mismatches: 43, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
193 8 0.03
194 122 0.48
195 122 0.48
196 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (194 bp):
CAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
TTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCGAGCCAGCCAAGAGACAGAACA
CGTAAGCCGGGGACCGACTCGATCCCCCTGCATGCTGTCGATCCTACTACTGGTCCTGCTACCG
Found at i:13992689 original size:26 final size:26
Alignment explanation
Indices: 13992651--13992703 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13992641 CTAGTCCGAT
13992651 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
13992677 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
13992703 C
1 C
13992704 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13992786 original size:195 final size:193
Alignment explanation
Indices: 13991908--13992794 Score: 742
Period size: 195 Copynumber: 4.6 Consensus size: 193
13991898 TTTGGCTGGG
* * * * *** * * *
13991908 GCTTACACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTATGGGTGCTCAA
1 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTGAG
* * ** * * **
13991973 CCAACCGGAGAGGTAGAATGCACAAGCCAGGGATCGGC-CTAATCCCCC-CTGCGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAAT-CGTAAG-CGGGGATCAGCTC-GGTCCCCCTCT--GTGCTGTCGAT
* * * * * *
13992036 CCTGCTGCTAGTCCTGCTACCGTAACCCTCTG-TCTGGTCCGATCTTAGACTGGGAATGAACTCC
126 CCTACTACTGGTCCTGCTACCGCAACCCTC-GATCTAGTCCGATCTTAGACTGGGAATGAACTCT
13992100 GTAT
190 GTAT
** * * * * *
13992104 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTGAG
* * * * * * *
13992169 CCGGCCGGAAAGGCAGAATGCGCAAGCTGGGGATC-GCCCGATCCCTCCTGTGTGCTGTCGGT-C
66 CCGACCGGAGAGGCAGAAT-CGTAAGC-GGGGATCAGCTCGGTCCC-CCTCTGTGCTGTCGATCC
* *
13992232 --CTACT-G--C--C-A---CAACCCTCGATC-CGATCCGATCTTAGACTAGGAATGAACTCTGT
128 TACTACTGGTCCTGCTACCGCAACCCTCGATCTAG-TCCGATCTTAGACTGGGAATGAACTCTGT
13992285 AT
192 AT
* * * * *
13992287 GCTTAGACATGGAATGAACTTCGTATGCCCAAGCCTACCCATGAAACGAGCATGCAGGCACTCGA
1 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCT-GA
* * * * * * * *
13992352 -TCGATCGAAGAGGTAGAACACGTCAGCCGGGGATC-GACTCGATCCCCCTGC-ATGCTGTCGAT
65 GCCGACCGGAGAGGCAGAA-TCGTAAG-CGGGGATCAG-CTCGGTCCCCCT-CTGTGCTGTCGAT
* * * * * * **
13992414 CTTACTATTGGTCCTGCTACCGTAA-CCTTGATCTGGTTCGATCTTAGACTGGGAATGAACTCCA
126 CCTACTACTGGTCCTGCTACCGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTG
13992478 TAT
191 TAT
* * *
13992481 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGTCT-A
1 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCG-CTGA
* * * *
13992545 GCC-AGCCAGAGAGACAGAATCTGTAAGTCGGGGACCAGTTCGGTCCCCCCTCTGTGCTGTCGAT
65 GCCGA-CCGGAGAGGCAGAATC-GTAAG-CGGGGATCAGCTCGGT-CCCCCTCTGTGCTGTCGAT
* * *
13992609 CCTACTGCT-GTCCTGCTGCTGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTG
126 CCTACTACTGGTCCTGCTACCGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTG
13992673 TAT
191 TAT
*
13992676 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTTCAGGCGCTGAG
1 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTGAG
* *
13992741 CCGACCGGAGAGGCATAATGCGTAAGCAGGGGATCAGCCCGGTCCCCCTCTGTG
66 CCGACCGGAGAGGCAGAAT-CGTAAGC-GGGGATCAGCTCGGTCCCCCTCTGTG
13992795 TGCTGCTGAT
Statistics
Matches: 560, Mismatches: 95, Indels: 74
0.77 0.13 0.10
Matches are distributed among these distances:
182 2 0.00
183 127 0.23
184 10 0.02
186 5 0.01
187 2 0.00
189 2 0.00
191 2 0.00
192 5 0.01
193 3 0.01
194 139 0.25
195 172 0.31
196 90 0.16
197 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (193 bp):
GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTGAG
CCGACCGGAGAGGCAGAATCGTAAGCGGGGATCAGCTCGGTCCCCCTCTGTGCTGTCGATCCTAC
TACTGGTCCTGCTACCGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:13993045 original size:26 final size:27
Alignment explanation
Indices: 13992994--13993047 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
13992984 CTGGTCCCAT
*
13992994 CTTAGACTGAGGAATGAACTCTGTATG
1 CTTAGACTGAGGAATGAACTCCGTATG
*
13993021 CTTAGACTG-GGGATGAACTCCGTATG
1 CTTAGACTGAGGAATGAACTCCGTATG
13993047 C
1 C
13993048 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGAGGAATGAACTCCGTATG
Found at i:13994036 original size:159 final size:157
Alignment explanation
Indices: 13993752--13994244 Score: 420
Period size: 159 Copynumber: 3.1 Consensus size: 157
13993742 CTTAGACATC
* ** * * * **
13993752 GAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGC-AGGCGCTCAGTCGGTCGAA
1 GAATGAACTCCGTATGCAAAAGCCAACCCAGGAAA-GAGACGTGCGA-GCACTCAGCCGACCGAA
* * * * * * * **
13993815 AAGGTAGAATGCGTAAGCCAGGGATTGGCCTGGACCCCCCCTGTGTGCTGTCGATCCAGCTACCA
64 GAGGCAAAATGCGTAAGTCAGGGATCGGCCTGG-TCCCCCCTGCGTGCTACCGATCCAGCTACCA
13993880 CAACCCTTGGTCTGATCTGATCTTAGACTGG
128 CAACCCTTGGTCTG-TCTGATCTTAGACTGG
* * * * * * *
13993911 GAATGAACTCCGTATGCAAAAGTCGACCCCCGGAACGAG-CGTGCGAGCATTGAGCCTACCGAAG
1 GAATGAACTCCGTATGCAAAAG-CCAACCCAGGAAAGAGACGTGCGAGCACTCAGCCGACCGAAG
* * * *
13993975 AGGCATAATGCGCAAGTCAGGGATCGGCCTGGTCCCCCTCTACGTGCTACCGATCCCGCTACCAC
65 AGGCAAAATGCGTAAGTCAGGGATCGGCCTGGTCCCCC-CTGCGTGCTACCGATCCAGCTACCAC
* * * * **
13994040 AACCCTCGATCCGGCTGGGGCTTAGACAT-G
129 AACCCTTGGTCTGTCT-GATCTTAGAC-TGG
* * ** * * * * * *
13994070 GAACGAACTCCCTATGCCTAAGCCAACCCATGAAATAGACGTGCGGGCGCTCAGTCGGCCGAAGA
1 GAATGAACTCCGTATGCAAAAGCCAACCCAGGAAAGAGACGTGCGAGCACTCAGCCGACCGAAGA
* ** *
13994135 GGCAAAATGCGTAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCCTA-CTACCGCA
66 GGCAAAATGCGTAAGTCAGGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCC-AGCTACCACA
*
13994199 ACCCTTGGTCTGGTCCGATCTTAGACTGG
130 ACCCTTGGTCT-GTCTGATCTTAGACTGG
13994228 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
13994245 TTAGACTGGG
Statistics
Matches: 258, Mismatches: 67, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 72 0.28
159 175 0.68
160 10 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCAAAAGCCAACCCAGGAAAGAGACGTGCGAGCACTCAGCCGACCGAAGA
GGCAAAATGCGTAAGTCAGGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCCAGCTACCACAA
CCCTTGGTCTGTCTGATCTTAGACTGG
Found at i:13994568 original size:171 final size:170
Alignment explanation
Indices: 13994264--13994714 Score: 557
Period size: 171 Copynumber: 2.6 Consensus size: 170
13994254 GGATGAAGTT
* ** * * * *
13994264 TGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGTGCTCAGCCGGTCGAAGAGG-CGTATTG
1 TGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGTAG-AATG
* * * * * * * *
13994328 CGAAAGTCGAGGATCAACCCGGTCCCCCTCTGCGTGCTGTTGATCTCGCTGCCGGTCCTACTGCC
65 CGCAAGTCGAGGATCAGCCCGG-CCCCCTCTACGTGCTGTCGATCCCACTGCCGATCCTACTACC
*
13994393 ATAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTC
129 ATAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTC
* * *
13994435 TGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAACCGATCGGAGAGGTAGAATGC
1 TGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGTAGAATGC
* * *
13994500 GCAAGCCGAGGATCAGCCCGG-CCCCTCTATGTACGCTGTCGATCCCACTGCCGATCCTGCTACC
66 GCAAGTCGAGGATCAGCCCGGCCCCCTCTACGT--GCTGTCGATCCCACTGCCGATCCTACTACC
** *
13994564 ATAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTC
129 ATAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTC
* **
13994606 TGTATGCCTAAGCCAA-CCACAAAACAAGCGTGCAAGTGCTCAGCCGATCGAAGAGGTAGAATGC
1 TGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGTAGAATGC
* * *
13994670 GCAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCC
66 GCAAGTCGAGGATCAGCCCG-GCCCCCTCTACGTGCTGTCGATCC
13994715 TGCTGTTGGT
Statistics
Matches: 239, Mismatches: 36, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
169 9 0.04
170 71 0.30
171 149 0.62
172 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (170 bp):
TGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGTAGAATGC
GCAAGTCGAGGATCAGCCCGGCCCCCTCTACGTGCTGTCGATCCCACTGCCGATCCTACTACCAT
AACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTC
Found at i:13994762 original size:170 final size:168
Alignment explanation
Indices: 13994264--13994782 Score: 528
Period size: 171 Copynumber: 3.0 Consensus size: 168
13994254 GGATGAAGTT
* * * * *
13994264 TGTATGCCTAAGTCAACC-CATGAAACGAGCGCGCGGGTGCTCAGCCGGTCGAAGAGG-CGTATT
1 TGTATGCCTAAGCCAACCACA--AAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGTAG-AAT
* * *
13994327 GCGAAAGTCGAGGATCAACCCGGTCCCCCTCTGCGTGCTGTTGAT-CTCGCTGCCGGTCCTACTG
63 GCGCAAGTCGAGGATCAGCCC-GTCCCCCTCTGCGTGCTGTCGATCCT-GCTGCCGGTCCTACTG
*
13994391 CCATAACCCTCAGTCTGG-CTAGGGCTTAGACATGGAATGAACTC
126 CCATAACCCTCAGTCTGGCCCA--GCTTAGACATGGAATGAACTC
* * *
13994435 TGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAACCGATCGGAGAGGTAGAATGC
1 TGTATGCCTAAGCCAA-CCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGTAGAATGC
* * ** ** * * *
13994500 GCAAGCCGAGGATCAGCCCG-GCCCCTCTATGTACGCTGTCGATCCCACTGCCGATCCTGCTACC
65 GCAAGTCGAGGATCAGCCCGTCCCCCTCTGCGT--GCTGTCGATCCTGCTGCCGGTCCTACTGCC
** * ***
13994564 ATAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTC
128 ATAACCCTCAGTCTGGC-CCAGCTTAGACATGGAATGAACTC
* **
13994606 TGTATGCCTAAGCCAACCACAAAACAAGCGTGCAAGTGCTCAGCCGATCGAAGAGGTAGAATGCG
1 TGTATGCCTAAGCCAACCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGTAGAATGCG
* ** * **
13994671 CAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGTTGGTCCTATTGCCGC
66 CAAGTCGAGGATCAGCCCG-TCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGGTCCTACTGCCAT
* *
13994736 AACCCTCAATCTGGTCCCATCTTAGAC-TGGGAATGAACTC
130 AACCCTCAGTCTGG-CCCAGCTTAGACAT-GGAATGAACTC
13994776 TGTATGC
1 TGTATGC
13994783 TTAGCCATGG
Statistics
Matches: 281, Mismatches: 55, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
169 10 0.04
170 118 0.42
171 138 0.49
172 13 0.05
173 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (168 bp):
TGTATGCCTAAGCCAACCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGTAGAATGCG
CAAGTCGAGGATCAGCCCGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGGTCCTACTGCCATA
ACCCTCAGTCTGGCCCAGCTTAGACATGGAATGAACTC
Found at i:13994785 original size:26 final size:26
Alignment explanation
Indices: 13994756--13994808 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13994746 CTGGTCCCAT
*
13994756 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
13994782 CTTAGCCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
13994808 C
1 C
13994809 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:13995206 original size:159 final size:157
Alignment explanation
Indices: 13994781--13995227 Score: 409
Period size: 159 Copynumber: 2.8 Consensus size: 157
13994771 AACTCTGTAT
* * * * * *
13994781 GCTTAGCCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGT-GCAAGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT-TCG-AGGCTGA
** * * * *
13994845 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTATGTGCTGTCGATC
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATC
** ** ***
13994910 CTGCTACTGCAACCCTCAGTCTGGTCTGA
129 CCACTACCACAACCCTCAGTCTCAACTGA
* * * * * *
13994939 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAGGTCAACCTACAAAATGAGCGTGC-AGGCATTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGAGGC--TG
* * * * * * * *
13995002 AGTCGGCCAGAGAGGCATAATGCGTAAG-TCGGGAATTAGCTCGGTCCCCCTCTGCGTGCTGTCG
63 AGCCGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGGTCCCCC-CTGTGTGCTGTCG
* *
13995066 GTCCCACTACCACAACCCTCAGTC-CAACTGGG
126 ATCCCACTACCACAACCCTCAGTCTCAACT-GA
* *
13995098 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTTCGAGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGAG-GCTGAG
* ** *
13995163 CCGGCCGGAGAGGTAGAACACGCAAGCTGGGGATCAGCCCGGTCCCCCCTGTATGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCC
13995228 TGCTGTCGCA
Statistics
Matches: 222, Mismatches: 56, Indels: 22
0.74 0.19 0.07
Matches are distributed among these distances:
156 2 0.01
157 1 0.00
158 97 0.44
159 116 0.52
160 4 0.02
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGAGGCTGAGC
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCCC
ACTACCACAACCCTCAGTCTCAACTGA
Found at i:13995287 original size:24 final size:24
Alignment explanation
Indices: 13995255--13995300 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
13995245 ATCCGATATG
13995255 ATCTTAGACTAGGA-ATGAACTCGT
1 ATCTTAGACT-GGAGATGAACTCGT
13995279 ATCTTAGACTGGAGATGAACTC
1 ATCTTAGACTGGAGATGAACTC
13995301 TATGCCTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (24 bp):
ATCTTAGACTGGAGATGAACTCGT
Found at i:13996013 original size:26 final size:26
Alignment explanation
Indices: 13995975--13996027 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13995965 GGCTCAAAAT
13995975 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13996001 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
13996027 C
1 C
13996028 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13996344 original size:159 final size:158
Alignment explanation
Indices: 13996000--13996502 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 158
13995990 AACTCCGTAT
* * * * *
13996000 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTAAG
* * *
13996065 CCGGTCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGGTCCCCTCTATGTGCTATCGATCC
66 CCGGTCGAAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGGTCCCCTCTACGTGCTACCGATCC
** ** *
13996130 TGCTGCCACAACCCTTGGTCTAGTCTGA
131 CACTGCCACAACCCTCAGTCTAGGCTGA
* * * * *
13996158 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGTTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTAA
* * * * *
13996222 GCTGG-CTGAAGAGGCATAATGCGCAAG-TAGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCG
65 GCCGGTC-GAAGAGGCAGAATGCACAAGCCA-AGGATCGGCCCGGT-CCCCTCTACGTGCTACCG
* *
13996285 GTCCCACTGCCACAACCCTCAGTCT-GGCTGGG
127 ATCCCACTGCCACAACCCTCAGTCTAGGCT-GA
* * * * *
13996317 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT-AGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTACAGGCGCTAA
* * * ** ** * * * * *
13996381 GCCAGTCGGAGAGGCCGAATGTGCAAGCCGGGGATC-GCCTTGGTCCCCCCTGCGTGCTGCCAAT
65 GCCGGTCGAAGAGGCAGAATGCACAAGCCAAGGATCGGCC-CGGTCCCCTCTACGTGCTACCGAT
* * * * * * *
13996445 CCTACTACCGCAACCCTCAATCCAGTCCGA
129 CCCACTGCCACAACCCTCAGTCTAGGCTGA
*
13996475 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
13996503 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 153 0.55
159 117 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTAAG
CCGGTCGAAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGGTCCCCTCTACGTGCTACCGATCC
CACTGCCACAACCCTCAGTCTAGGCTGA
Found at i:13996505 original size:26 final size:26
Alignment explanation
Indices: 13996476--13996528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13996466 CCAGTCCGAT
13996476 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13996502 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13996528 C
1 C
13996529 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14002858 original size:26 final size:26
Alignment explanation
Indices: 14002808--14002858 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14002798 CCGATCTGAT
**
14002808 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14002834 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14002859 ACCTAGGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14004067 original size:26 final size:26
Alignment explanation
Indices: 14004031--14004083 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14004021 CTAGTCTGAT
14004031 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14004057 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14004083 C
1 C
14004084 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14004230 original size:180 final size:182
Alignment explanation
Indices: 14003874--14004271 Score: 473
Period size: 180 Copynumber: 2.2 Consensus size: 182
14003864 CAGCTGGGGT
* * * * * * *** *** *
14003874 TTAGACATGTAATGAACTCCCTATGCCTAAGGCAACTCACGAAATGGACATGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCCCGATATGGGTGTGCGGGCAATCAGCC
* * *
14003939 -GACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGGTCCCCCGTGCGTGCTACTGATCCT
66 AG-CCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCAGTCCCCCCTGCGTG--ACTGATCCT
**
14004003 ACTGTCGCAACCCTCGATCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
128 ACTACCGCAACCCTCGATCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
* *
14004058 TTAGAC-TAGGGATGAACTTCGTATGCCTAAGTCAACCCCCGATATGGGTGTGCGGGCAATCAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCCCGATATGGGTGTGCGGGCAATCAGC
* * * *
14004122 CAGCCGGAGAGGTAG-ATGCGTAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTG-CTGGTCCTGC
65 CAGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGACTGATCCTAC
* * *
14004185 TACCGTAACCCTCGGTCT-GATCTGATCTTAGACTAGGAATGAACTCTGTATGC
130 TACCGCAACCCTCGATCTAG-TCTGATCTTAGACTAGGAATGAACTCCGTATGC
14004238 TTAGACATGGAATGAACTCCGTATGCCTAAGTCA
1 TTAGACATGGAATGAACTCCGTATGCCTAAGTCA
14004272 GCCCATGAAA
Statistics
Matches: 181, Mismatches: 29, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
179 1 0.01
180 84 0.46
181 1 0.01
183 35 0.19
184 59 0.33
185 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (182 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCCCGATATGGGTGTGCGGGCAATCAGCC
AGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGACTGATCCTACT
ACCGCAACCCTCGATCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
Found at i:14004240 original size:26 final size:26
Alignment explanation
Indices: 14004211--14004263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14004201 CTGATCTGAT
*
14004211 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14004237 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14004263 C
1 C
14004264 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14004663 original size:159 final size:159
Alignment explanation
Indices: 14004236--14004683 Score: 420
Period size: 159 Copynumber: 2.8 Consensus size: 159
14004226 AACTCTGTAT
* * *
14004236 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAGCCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
** * * * ** * * * *
14004301 CTGGTCAGAAAGGCAGAATGAGCAAGCCAGGAATTAGCCCGATCCCCAC-CTGCGTGCTGTCGAT
66 CCAGTCAGAGAGGCAGAATGAGCAAGTCAGGGATCGGCCCGGTCCCC-CTCTACGTGATGCCGAT
** * *
14004365 CTTGCTGCCGCAACCCTCGATTCGATCCGA
130 CCCGCTGCCACAACCCTCGATCCGATCCGA
* * * * *
14004395 TCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * **
14004459 GCCCGCCAGAGAGGCATAATGCGCAAGTCGGGGATCGACTTGGTCCCCCTCTACGTGATGCC-AG
65 GCCAGTCAGAGAGGCAGAATGAGCAAGTCAGGGATCGGCCCGGTCCCCCTCTACGTGATGCCGA-
* * * * * *
14004523 TCCCGCTGCCACAGCCCTTGGTCCG-GCTGGG
129 TCCCGCTGCCACAACCCTCGATCCGATC-CGA
* * * *
14004554 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCACGACACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
14004619 CCAGTCAGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGGT-CCCCTTTACGTGCTGTCGATC
66 CCAGTCAGAGAGGCAGAATGAGCAAGTCAGGGATCGGCCCGGTCCCCCTCTACGTGATGCCGATC
14004683 C
131 C
14004684 TGCTATCGTA
Statistics
Matches: 227, Mismatches: 56, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
158 21 0.09
159 205 0.90
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCAGTCAGAGAGGCAGAATGAGCAAGTCAGGGATCGGCCCGGTCCCCCTCTACGTGATGCCGATC
CCGCTGCCACAACCCTCGATCCGATCCGA
Found at i:14004698 original size:13 final size:13
Alignment explanation
Indices: 14004680--14004705 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14004670 CGTGCTGTCG
14004680 ATCCTGCTATCGT
1 ATCCTGCTATCGT
14004693 ATCCTGCTATCGT
1 ATCCTGCTATCGT
14004706 CAGAGAGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (13 bp):
ATCCTGCTATCGT
Found at i:14006297 original size:159 final size:158
Alignment explanation
Indices: 14005999--14006392 Score: 463
Period size: 159 Copynumber: 2.5 Consensus size: 158
14005989 GGCTCAAACT
* *
14005999 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTA-GGCT-TTCA
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC--GTACGGGTGCTCA
** * * * *
14006062 GCCGGCCAAAGAGGCATAATGCGCAAGCCGGGGATCGGCACGGTCCCCCTCTGCGTACTGTCGGT
63 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCACGGTCCCCCTCTACGTACTGTCGAT
* * *
14006127 CCTGCTGCCACAACCCTCGGTCTGATTTCAG
128 CCTGCTACCACAACCCTCGGTCCGATCTCAG
* * *
14006158 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * **
14006223 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGGTCCCCC-CATACGTGTTGTCGATC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCACGGTCCCCCTC-TACGTACTGTCGATC
* * * *
14006287 TTGCTACCACAACCCTCGGTCCGGTCTGAT
129 CTGCTACCACAACCCTCGGTCCGATCTCAG
* * * * *
14006317 CTTAGACTGCAAATGAACTCCGTATGCC-AAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
14006381 CGGCCGGAGAGG
65 CGGCCGGAGAGG
14006393 TTGGATGGCA
Statistics
Matches: 200, Mismatches: 30, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
157 3 0.01
158 47 0.23
159 149 0.75
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCACGGTCCCCCTCTACGTACTGTCGATCCT
GCTACCACAACCCTCGGTCCGATCTCAG
Found at i:14007020 original size:662 final size:661
Alignment explanation
Indices: 14005739--14007038 Score: 1617
Period size: 661 Copynumber: 2.0 Consensus size: 661
14005729 ATGGCTACTA
* * *
14005739 GCAGCAAACCTATAAAATCTCAAGTGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGG
1 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTAAGTTCTCGAGGTTGGATGAGGG
* * * * * *
14005804 ATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCGCACATCATGTGCGCACACCTCCTGGC
66 ATAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACACCATGCGCGCACACCCCCTGGC
* *
14005869 CCCCCAATCGCTGGAACCTCCAATGCCGTCGGTTAGGCTCTCCGGCGATGCTCCGACGATGGTGA
131 CCCCCAATCGCTGGAACCACCAATACCGTCGGTTAGGCTCTCCGGCGATGCTCCGACGATGGTGA
* * * *
14005934 CCCGGGTGAAAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCACCGTGGCTCAAACT
196 CCCGAGTGAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAACATGTGCACCGTGGCTCAAAAT
* * * **
14005999 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTAGGCTTTCAGC
261 CTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * **
14006064 CGGCCAAAGAGGCATAATGCGCAAGCCGGGGATCGGCACGGTCCCCCTCTGCGTACTGTCGGTCC
326 CGGCCAAAGAGGCAGAAAGCACAAGCCGAGGATCGGCACGGTCCCCCTCTGCGTACTGTCAATCC
* * **
14006129 TGCTGCCACAACCCTCGGTCTGATTTCAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
391 TGCTGCCACAACCCTCGGTCCGATCTCAGCTTAGACATGGAATGAACTCCGTATGCAAAAGCCAA
* * * * * * * * * * * * *
14006194 CCCATGAAATGAGCGTACGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGACCGG
456 CCCACGAAACGAGCATACGAGCGCTCAACCAGCCGAAGAGGCAAAATACGCAAACCGAGGACCGA
* ** *
14006259 CCCGGTCCCCCCATACGTGTTGTCGATCTTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGAC
521 CCCGGTCCCCCCATACGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGTCTGAGCTTAGAC
* *
14006324 TGCAAATGAACTCCGTATGCCAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGA
586 TGCAAATGAACTCCGTATGCCAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGGCCGGA
14006389 GAGGTTGGATG
651 GAGGTTGGATG
*
14006400 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTGGATGAGGG
1 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTAAGTTCTCGAGGTTGGATGAGGG
14006465 ATAGGGGGCCAATA-AAAGGCCAAGTACCAGCACCCATCACACACCATGCGCGCACACCCCCTGG
66 ATA-GGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACACCATGCGCGCACACCCCCTGG
* * *
14006529 CCCCCCCAATCG-TCGGAACCACCAATACCGTCGGTTAGGCTCTTCGTCGTTGCTCCGACGATGG
130 -CCCCCCAATCGCT-GGAACCACCAATACCGTCGGTTAGGCTCTCCGGCGATGCTCCGACGATGG
* ***
14006593 TGCCCCGAGTGAAAAAAATTTGGCACCAGCACATGCCCGAGCCCAACATGTGCACCGTGGCTCAA
193 TGACCCGAGTGAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAACATGTGCACCGTGGCTCAA
* * *
14006658 AATCTTAGATTAGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGGGTGCGGGCGCTC
258 AATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTC
* ** * * * *
14006723 AGTCGGCCGGAGAGGCAGAAAGCACAAGTCGAGGATCGGCTCGGTCCCTC-CTGCGTGCTGTCAA
323 AGCCGGCCAAAGAGGCAGAAAGCACAAGCCGAGGATCGGCACGGTCCCCCTCTGCGTACTGTCAA
* * * * *
14006787 TCCTGCTGCCGCAACCCTCGGTCCGGTCT-GGTCTTCGAC-TGGGAATGAACTTCGTATGCAAAA
388 TCCTGCTGCCACAACCCTCGGTCCGATCTCAG-CTTAGACAT-GGAATGAACTCCGTATGCAAAA
** * * * * * *
14006850 TTCAACCCACGATACGAGCATGCGAGCGCTGAGCCAGTCGAAGAGGTAAAATACGCAAACCGAGG
451 GCCAACCCACGAAACGAGCATACGAGCGCTCAACCAGCCGAAGAGGCAAAATACGCAAACCGAGG
* * *** * * * * *
14006915 ATCGACCTGGTCCCCTTTTGCGTGCTGTCGGTCCCGTTGCCACAACCCTCGGTCCGG-CTGGGGC
516 ACCGACCCGGTCCCCCCATACGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGTCT-GAGC
* * * *
14006979 TTAGACATG-GAATGAGCTGCC-TATGCCTAAGCCAACCCACGAAACGGGTATGCGGGCGCT
580 TTAGAC-TGCAAATGAACT-CCGTATGCC-AAGCCAACCCACGAAACGAGCATGCGGGCGCT
14007039 CAGTCAGCTG
Statistics
Matches: 536, Mismatches: 94, Indels: 17
0.83 0.15 0.03
Matches are distributed among these distances:
660 4 0.01
661 280 0.52
662 252 0.47
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (661 bp):
GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTAAGTTCTCGAGGTTGGATGAGGG
ATAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACACCATGCGCGCACACCCCCTGGC
CCCCCAATCGCTGGAACCACCAATACCGTCGGTTAGGCTCTCCGGCGATGCTCCGACGATGGTGA
CCCGAGTGAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAACATGTGCACCGTGGCTCAAAAT
CTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAAAGAGGCAGAAAGCACAAGCCGAGGATCGGCACGGTCCCCCTCTGCGTACTGTCAATCC
TGCTGCCACAACCCTCGGTCCGATCTCAGCTTAGACATGGAATGAACTCCGTATGCAAAAGCCAA
CCCACGAAACGAGCATACGAGCGCTCAACCAGCCGAAGAGGCAAAATACGCAAACCGAGGACCGA
CCCGGTCCCCCCATACGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGTCTGAGCTTAGAC
TGCAAATGAACTCCGTATGCCAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGGCCGGA
GAGGTTGGATG
Found at i:14007076 original size:159 final size:156
Alignment explanation
Indices: 14006661--14007162 Score: 429
Period size: 158 Copynumber: 3.2 Consensus size: 156
14006651 GGCTCAAAAT
* * * *
14006661 CTTAGATTAGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGGGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACG-GGATGCGGGCGCTCAGT
* * * * *
14006726 CGGCCGGAGAGGCAGAAAGCACAAGTCGAGGATCGGCTCGGT-CCCTCCTGCGTGCTGTCAATCC
64 CAGCTGGAGAGGCAGAATGCACAAGCCGAGGATCGCCT-GGTCCCCTCCTGCGTGCTGTCAATCC
* * *
14006790 TGCTGCCGCAACCCTCGGTCCGGTCTGGT
128 CGCTGCCACAACCCTCGGTCCGGTCTGGG
* * ** ** * * * * *
14006819 CTTCGACTGGGAATGAACTTCGTATGCAAAATTCAACCCACGATACGAGCATGCGAGCGCTGAGC
1 CTTAGACTGGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAACG-GGATGCGGGCGCTCAGT
* * * * * * ** **
14006884 CAG-TCGAAGAGGTAAAATACGCAAACCGAGGATCGACCTGGTCCCCTTTTGCGTGCTGTCGGTC
64 CAGCT-GGAGAGGCAGAATGCACAAGCCGAGGATCG-CCTGGTCCCCTCCTGCGTGCTGTCAATC
*
14006948 CCGTTGCCACAACCCTCGGTCCGG-CTGGGG
127 CCGCTGCCACAACCCTCGGTCCGGTCT-GGG
*
14006978 CTTAGACAT-GGAATGAGCTGCCTATGCCTAAGCCAACCCACGAAACGGGTATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGGG-ATGCGGGCGCTCAG
* * ** * *
14007042 TCAGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCACC-CCTATGTGTTGTCGATC
63 TCAGCTGGAGAGGCAGAATGCACAAGCCGAGGATC-GCCTGGTCCCCTCCTGCGTGCTGTCAATC
** * * **
14007106 CTACTGCCGCAACCCTCGGTCCAGTCTGAT
127 CCGCTGCCACAACCCTCGGTCCGGTCTGGG
14007136 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCC-TATGC
14007163 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 68, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 130 0.49
159 127 0.48
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGGGATGCGGGCGCTCAGTCA
GCTGGAGAGGCAGAATGCACAAGCCGAGGATCGCCTGGTCCCCTCCTGCGTGCTGTCAATCCCGC
TGCCACAACCCTCGGTCCGGTCTGGG
Found at i:14008033 original size:26 final size:26
Alignment explanation
Indices: 14008004--14008056 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14007994 CCGATCCGAT
*
14008004 CTTAGATTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* * *
14008030 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
14008056 C
1 C
14008057 CCAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:14009210 original size:158 final size:155
Alignment explanation
Indices: 14008752--14009214 Score: 459
Period size: 158 Copynumber: 2.9 Consensus size: 155
14008742 AACTCCGTAT
* * * *
14008752 GCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAAGGGCGTGTGGGCGCTCAG
* * * * * *
14008817 CCGACTGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCTGGTCCCCCCTGCATGCTGTCGATCT
65 CCGAC-GAAGAGGCAGAATGCGCAAGCCGGGGATC-GCCTGGTCCCCCCTGCGTGCTGCCGATCC
* *
14008882 TGCTCCCACAACCCTCCGTCTGGTCTGA
128 TGCTACCACAACCCTCGGTCTGGTCTGA
* * * * * *
14008910 TCTTAGAC-TGGGAATCAACTTCGTATGCATAAGTCAACCCACGAAAGGAGCGTGCT-GGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGG-GCGTG-TGGGCGCTC
* * * *
14008973 AGCCGACGAAGAGGCATAATGTC-CAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCGGCC-A
63 AGCCGACGAAGAGGCAGAATG-CGCAAGCCGGGGATCG-CCTGGTCCCCC-CTGCGTGCTGCCGA
** *
14009036 GTCCCACTACCACAACCCTCGGTCTGG-CTGGG
125 -TCCTGCTACCACAACCCTCGGTCTGGTCT-GA
* * *
14009068 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGGCGTGTGGGCGCTCAG
* * * *
14009133 CCGGTCGAAGAGGCAGAATGCGCATGCCGGGGATCAGCCTGATCCCCCCTGCGTGTTGCCGATCC
65 CC-GACGAAGAGGCAGAATGCGCAAGCCGGGGATC-GCCTGGTCCCCCCTGCGTGCTGCCGATCC
* *
14009198 TGCTATCGCAACCCTCG
128 TGCTACCACAACCCTCG
14009215 ATCCGATCCA
Statistics
Matches: 244, Mismatches: 46, Indels: 30
0.76 0.14 0.09
Matches are distributed among these distances:
156 1 0.00
157 40 0.16
158 163 0.67
159 39 0.16
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGGCGTGTGGGCGCTCAGC
CGACGAAGAGGCAGAATGCGCAAGCCGGGGATCGCCTGGTCCCCCCTGCGTGCTGCCGATCCTGC
TACCACAACCCTCGGTCTGGTCTGA
Found at i:14009276 original size:25 final size:26
Alignment explanation
Indices: 14009227--14009278 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14009217 CCGATCCAAT
*
14009227 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14009253 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14009278 C
1 C
14009279 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14009941 original size:159 final size:158
Alignment explanation
Indices: 14009634--14010017 Score: 432
Period size: 159 Copynumber: 2.4 Consensus size: 158
14009624 ACATGGAATA
* * * * ** * *
14009634 AACTCCGTATGCCGAAGCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGACCGGAGAGCCAG
1 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGTCGAAGAGGCAG
* * * * * ** *
14009699 -ATGCGTAAGTTGGGGACTGGCCCGATCCCCCCTGCGTGCTGTTGATCCTTCTATTGCAACCTTC
66 AATGCGCAAGTCGGGGACTAGCCCAATCCCCCCTGCGTGCTGTCGATCCTTCTACCGCAACCCTC
* * *
14009763 AATCCGGTCCGATCTTAGACTGGGAAGG
131 AATCCGATCCGATCATAGACTAGGAAGG
* * * *
14009791 AACTCCGTATGCCTAAGTCAACCCACGAAATGACCATGCGAGCGCTCAACCGGTCGAAGAGGCAG
1 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGTCGAAGAGGCAG
*
14009856 AATGCGCAAGTCGGGGACTAGCTCAATTCCCCCCTGCGTGCTGTCGATCCTATC-ACCGCAACCC
66 AATGCGCAAGTCGGGGACTAGCCCAA-TCCCCCCTGCGTGCTGTCGATCCT-TCTACCGCAACCC
* * **
14009920 TCAGTCCGATCTGATCATAGACTAGGAATT
129 TCAATCCGATCCGATCATAGACTAGGAAGG
* * * *
14009950 AACTTCGCATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGTC-AGAGAGGCA
1 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGTCGA-AGAGGCA
14010014 GAAT
65 GAAT
14010018 ACACAAGACA
Statistics
Matches: 187, Mismatches: 36, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
157 53 0.28
158 21 0.11
159 111 0.59
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGTCGAAGAGGCAG
AATGCGCAAGTCGGGGACTAGCCCAATCCCCCCTGCGTGCTGTCGATCCTTCTACCGCAACCCTC
AATCCGATCCGATCATAGACTAGGAAGG
Found at i:14010156 original size:26 final size:26
Alignment explanation
Indices: 14010105--14010157 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14010095 CCGGTCCGAT
*
14010105 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
14010131 CTTAGACAT-GGAATGAACT-TCATATG
1 CTTAGAC-TGGGAATGAACTCT-ATATG
14010157 C
1 C
14010158 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:14010473 original size:157 final size:159
Alignment explanation
Indices: 14010130--14010473 Score: 372
Period size: 159 Copynumber: 2.2 Consensus size: 159
14010120 AACTCTGTAT
* *
14010130 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCAATCAG
* * * * * ** *
14010195 CTGGCCGCAGAGGTAAAATGCGTAAGTCGAGGATCAACCCGGTCCCCTTCTGTGTGCTGTCGGTC
66 CTGGCCGCAGAGGCAAAATGAGCAAGCCGAGGATCAACCCGATCCCCTTCTGCATGCTGTCGATC
* * * ** *
14010260 CTGCTGCCACAACCCTCGGTCCGATTGGG
131 CTACTACCACAACCCTCGGTCCAATCCGA
* * * * *
14010289 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCAATCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCAATCAG
* * * * * *
14010354 -TCGGTCGGAGAGGCAGAATGAGCATGCCGGGGATCAGCCCGATCCCC-T-TGCATGCTGTCGAT
66 CT-GGCCGCAGAGGCAAAATGAGCAAGCCGAGGATCAACCCGATCCCCTTCTGCATGCTGTCGAT
*
14010416 CCTACTACCGCAACCCTCGGTCCAATCCGA
130 CCTACTACCACAACCCTCGGTCCAATCCGA
* *
14010446 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTTCATATGC
14010474 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 31, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
156 1 0.01
157 57 0.38
158 2 0.01
159 92 0.61
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCAATCAG
CTGGCCGCAGAGGCAAAATGAGCAAGCCGAGGATCAACCCGATCCCCTTCTGCATGCTGTCGATC
CTACTACCACAACCCTCGGTCCAATCCGA
Found at i:14010483 original size:26 final size:26
Alignment explanation
Indices: 14010447--14010499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14010437 CCAATCCGAT
*
14010447 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14010473 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14010499 C
1 C
14010500 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14010521 original size:342 final size:343
Alignment explanation
Indices: 14010073--14010876 Score: 864
Period size: 342 Copynumber: 2.3 Consensus size: 343
14010063 CTACTGCTAG
* * **
14010073 TCCTACTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGA
1 TCCTACTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGA
* * *
14010137 CATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAG-CACTCAGCTG-GC
65 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCCACTCAGCCGAGC
* * ** * * * * * * *
14010200 CGCAGAGGTAAAATGCGTAAGTCGAGGATCAACCCGGTCCCCTTCTGTGTGCTGTCGGTCCTGCT
129 AG-AGAGGCAAAATGCAAAAGTCGAGGATCAACCCGATCCACTGCTGCGTGCTGCCAGTCCTACT
* * * *
14010265 GCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
193 ACCACAACCCTAGGTCCGAGTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
** * * * *** * *
14010330 TGAAACGGGCGTACGGGCAATCAGTCGGTCGGAGAGGCAGAATGAGCATGCCGGGGATCAGCCCG
258 CAAAACCGGCGTACGGGCAATCAGCCGATAAAAGAGGCAAAATGAGCAAGCCGGGGATCAGCCCG
* *
14010395 ATCCC-CTTGCATGCTGTCGA
323 ATCCCTCCTGCATGCTGCCGA
*
14010415 TCCTACTACCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* * * * *
14010480 -TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGCCGCTCAGCCGATCA
66 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCACTCAGCCGAGCA
* * * *
14010544 GAGAGGCATAATGCAAAAGTTGGGGATCAGCCCGATCCACTGCTGCGTGCTGCCAGTCCTACTAC
130 GAGAGGCAAAATGCAAAAGTCGAGGATCAACCCGATCCACTGCTGCGTGCTGCCAGTCCTACTAC
* * **
14010609 CACAACCCTAGGTCCGGGTAGGGCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCACA
195 CACAACCCTAGGTCCGAGTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
* *** * * * *
14010674 AAACCGGCGTATGGGTGCTCAGCCGATAAAAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGAT
260 AAACCGGCGTACGGGCAATCAGCCGATAAAAGAGGCAAAATGAGCAAGCCGGGGATCAGCCCGAT
*
14010739 CCCTCCTGCGTGCTGCCGA
325 CCCTCCTGCATGCTGCCGA
* * *
14010758 TCCTACTGCTGTCCTGCTGCCGCAACCCTCGGTTCGAA-CCGATCTTAGATTGGGAATGAACTCC
1 TCCTA-----------CTGCCGCAACCCTCGG-TCCAATCCGATCTTAGACTGGGAATGAACTTC
* *
14010822 GTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC
54 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
14010877 ATGCAGGCGC
Statistics
Matches: 379, Mismatches: 65, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
341 2 0.01
342 263 0.69
343 21 0.06
354 88 0.23
355 5 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (343 bp):
TCCTACTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCACTCAGCCGAGCAG
AGAGGCAAAATGCAAAAGTCGAGGATCAACCCGATCCACTGCTGCGTGCTGCCAGTCCTACTACC
ACAACCCTAGGTCCGAGTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
AACCGGCGTACGGGCAATCAGCCGATAAAAGAGGCAAAATGAGCAAGCCGGGGATCAGCCCGATC
CCTCCTGCATGCTGCCGA
Found at i:14013006 original size:158 final size:157
Alignment explanation
Indices: 14012508--14013125 Score: 648
Period size: 159 Copynumber: 3.9 Consensus size: 157
14012498 AACTCTATAT
* *
14012508 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCTACGAAA-GAAGCGTGCGGGCGCTCA
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCA
* * * *
14012572 GTCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTTCCCCCCTGCGTGCTGTCGAT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGG-TCCCCCTTGCGTGCTGTCGAT
* ** * *
14012637 CCTGCTACTGCAACCCTCAGTCCGATCTGA
129 CCTGCTGCCACAACCCTCGGTCCGA-CTGG
* * * * * * *
14012667 TCTTAGAC-TCGAAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * **
14012731 GCTGGCCGAAGAGGCATAATGCGCATGCTGGGGATCGGCCTGTTCCCCCTCTGCGTGCTGTCGGC
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCT-TGCGTGCTGTCGAT
* *
14012796 CCCGCTGCCACAACCCTCGGTCCGGCTAGG
129 CCTGCTGCCACAACCCTCGGTCCGACT-GG
* ** * * * * *
14012826 GCTTAGACATGGAATGAACTCCCTATGCCTAATTCAACCCACAAAATGGGCGTGCAGGCACTCAG
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
14012891 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCCGGTCCCCCTTACGTGCTACCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
* *
14012956 AGCTGCCACAACCTTCGGTCCGACTGGG
131 TGCTGCCACAACCCTCGGTCCGACT-GG
* * * * *
14012984 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
14013049 TCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGT-CCCCTTGCGTGCTGTCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
*
14013113 TGCTGCCGCAACC
131 TGCTGCCACAACC
14013126 TCAATCTGAT
Statistics
Matches: 377, Mismatches: 77, Indels: 12
0.81 0.17 0.03
Matches are distributed among these distances:
157 29 0.08
158 138 0.37
159 208 0.55
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGACTGG
Found at i:14013520 original size:26 final size:26
Alignment explanation
Indices: 14013489--14013540 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14013479 CTGGTATGAT
** *
14013489 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
*
14013515 CTTAGACACTGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
14013541 TGTAAGCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:14021204 original size:26 final size:26
Alignment explanation
Indices: 14021175--14021227 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14021165 CCGGTCTGAT
*
14021175 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14021201 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14021227 C
1 C
14021228 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14022095 original size:501 final size:498
Alignment explanation
Indices: 14020979--14022336 Score: 1553
Period size: 501 Copynumber: 2.7 Consensus size: 498
14020969 TGCCAGTCCT
* * * * *
14020979 ACTGCCATAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAAC
1 ACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
** * * * * *
14021044 CCATAAAACGAGCGTGCGGTGCTCAGCCGATCGGAAAGGCAGAATGCGTAAGCTGGGGATCGGCT
66 CCACGAAACGGGCGTGCGGTGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGC-GGGGATCGGCC
*
14021109 CGGT-CCCCCTGCGTGCTGTTGATCCTACTGCTGGTCCTACTGCCACAACCCTCGATCCGGTCTG
130 CGGTCCCCCCTGCGTGCTGTCGATCCTA---CT-G---T-C-G---CAACCCTCGATCCGGTCTG
* * *
14021173 ATCTTAGACTGGGAATGAA-CTCTGTATGCTTAGA--CATGGAATGAACTCCGTATGCCTAAGCC
183 ATCTTAGACTGGGAATGAATTTC-GTATGCTTAGACTCA-GGGATGAACTCCGTATGCCTAAGTC
* * * * *
14021235 AACCTATGAAACGAGCGTGCGGGCGCTTAGTCGGCCAGAGAGGTAGAATGCGTAAGTCGAGGATC
246 AACCCATGAAACGAGCGTGCGGGCGCTTAG-CGACCGGAGAGGCAGAATGCGTAAGCCGAGGATC
* * * *
14021300 GATCTGATCCCCCTGACGTGCTGTCGATCTTGCTACCACAACCCTCAGTCCGATTTGATCTTAGA
310 AACCTGGTCCCCCTG-CGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGATTTGATCTTAGA
* * * * *
14021365 CTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAACCG
374 ATAGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAACCA
** ** * * * *
14021430 AAGAGGCATAATACGTAAACTGGGGATCAGCCCAGTCCCCCTCTGTGTGTTGCCAATCCC
439 AAGAGGCATAATACACAAACCAGCGATCAGCCCAGTCCCCCTCTGCGTGCTACCAATCCC
* *
14021490 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGGACTCCCTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* ** * * * *
14021555 CCACGAAACGGGCATGCAGGCACTCAGTCGATAAGAGAGGTAGAATGCGCAAGTCGAGGATCGGC
66 CCACGAAACGGGCGTGC-GGTGCTCAGCCGATCAGAGAGGCAGAATGCGCAAG-CGGGGATCGGC
* * *
14021620 CCGATCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCGGTATGATCTTAGACTG
129 CCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTG
14021685 GGAATGAATTTCGTATGCTTAGACTCA-GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
194 GGAATGAATTTCGTATGCTTAGACTCAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * *
14021749 AGCGTTCGGGCGATTAGCCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACCTGGTCACCC
259 AGCGTGCGGGCGCTTAG-CGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCTGGTC-CCC
** * * * *
14021814 CTGCGTGCTGTCGATCCTGCTTTCGCAACCCTCAGTCTGGTTTGATCTTAGAATATGAATGAACT
322 CTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGATTTGATCTTAGAATAGGAATGAACT
* * * * * *
14021879 CCGTATGCATAAGTCAACCCATGAAACGAGTGTGCAGGTGCTGAGCCAACCAAAGAGGCATAGTG
387 CCATATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAACCAAAGAGGCATAATA
* ** *
14021944 CACAAGCCAGCGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGTCTC
452 CACAAACCAGCGATCAGCCCAGTCCCCCTCTGCGTGCTACCAATCCC
* *
14021991 ACTGCCACAACCCTC-ATTTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 ACTGCCACAACCCTCGATCT-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
14022055 CCCACGAAACGGGCGTGCGGGTGCTCAGCCAACCAGAGAGGCAAAATGCTCAAGCCGGGGATCAG
65 CCCACGAAACGGGCGTGC-GGTGCTCAGCCGATCAGAGAGGCAGAATGCGCAAG-CGGGGATCGG
* * * ** * *
14022120 CCCGGTCCCACCTGCGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACT
128 CCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACT
*
14022185 GGGAATGAACTTT-GTATGCTTAGACT-AGGGATGAACTCCGTATGCCTAAGTCAACCCATTAAA
193 GGGAATGAA-TTTCGTATGCTTAGACTCAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * * * * *
14022248 CGAGCGTGCAGGCGCTCAGCTAGTCGGAGAGGCATAATGCGTAAACCGAGGATCAGCCCGGTCCC
257 CGAGCGTGCGGGCGCTTAGCGA-CCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCTGGT-CC
*
14022313 CCTCTGCATGCTGTCGATCCTGCT
320 CC-CTGCGTGCTGTCGATCCTGCT
14022337 GCCGGTCTTG
Statistics
Matches: 719, Mismatches: 115, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
500 6 0.01
501 540 0.75
502 32 0.04
503 2 0.00
504 1 0.00
505 1 0.00
506 1 0.00
509 1 0.00
510 2 0.00
511 71 0.10
512 39 0.05
513 23 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (498 bp):
ACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCGGTGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCGGGGATCGGCCC
GGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG
AATGAATTTCGTATGCTTAGACTCAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTGCGGGCGCTTAGCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCTGGTCCCCCTGC
GTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGATTTGATCTTAGAATAGGAATGAACTCCAT
ATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAACCAAAGAGGCATAATACACA
AACCAGCGATCAGCCCAGTCCCCCTCTGCGTGCTACCAATCCC
Found at i:14022227 original size:26 final size:26
Alignment explanation
Indices: 14022177--14022229 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14022167 CCGATCCGAT
**
14022177 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14022203 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14022229 C
1 C
14022230 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14022581 original size:26 final size:27
Alignment explanation
Indices: 14022543--14022600 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
14022533 CTGATCCCAT
*
14022543 CTTAGACTGGGAATGAACTTCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
14022569 CTTAGACAT-GGAATGAACTCCGTATGC
1 CTTAGAC-TGGGAATGAACTCCGTATGC
14022596 CTTAG
1 CTTAG
14022601 CCAACCCATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:14022998 original size:158 final size:156
Alignment explanation
Indices: 14022568--14023079 Score: 399
Period size: 158 Copynumber: 3.2 Consensus size: 156
14022558 AACTTCGTAT
* * *
14022568 GCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCATGAAACGAGCGTGCGTGCGGGTGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAAC--G-G-GCGTGCGGGCGC
* * * * ** *
14022633 TCAGTCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCGCCGTCCCCC-CTATGTGCTGTC
61 TCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATTGGC-CCGTCCCCCTCCATGTGCTGTC
* * * * *
14022697 GATCCTGCTATCGCAACCCTCAGTTCGATTCGA
124 GATCCCGCTACCACAACCCTCAGTCCGACTCGA
* * * * * * *
14022730 TCTTAGAC-CGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGGGCGTGCGGGCGCTCA
** * * * * *
14022794 GCAAACCGGAGAGGCATAATGTGCAAGCCGGGGATTGGCCTTGTCCCCCTCCGTGTGCTGTCGGT
64 GCCGACCGGAGAGGCAGAATGCGCAAGCC-GGGATTGGCC-CGTCCCCCTCCATGTGCTGTCGAT
* * * *
14022859 CCCGTTGCCACAACCCTCAGTCCGACTGGG
127 CCCGCTACCACAACCCTCAGTCCGACTCGA
* *
14022889 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAA-CCACGAAACGGGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * *
14022953 CCGACCAGAGAGGCAGAATACGCAAGCCAGGGATTGGCTCGGTCCCCCTTGCA--TGCTGTCGAT
65 CCGACCGGAGAGGCAGAATGCGCAAGCC-GGGATTGGC-CCGTCCCCC-TCCATGTGCTGTCGAT
** * * *
14023016 CCTACTATCGCAACCCTCAGACCGA-TCTGA
127 CCCGCTACCACAACCCTCAGTCCGACTC-GA
* * *
14023046 TCTTAGAC-TAGGAATGAACTCTGTATGCTTAAGC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
14023080 TGGGGATAAA
Statistics
Matches: 273, Mismatches: 67, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 57 0.21
158 105 0.38
159 67 0.25
160 2 0.01
161 1 0.00
162 39 0.14
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGATTGGCCCGTCCCCCTCCATGTGCTGTCGATCCCG
CTACCACAACCCTCAGTCCGACTCGA
Found at i:14024672 original size:183 final size:186
Alignment explanation
Indices: 14024483--14024838 Score: 405
Period size: 188 Copynumber: 1.9 Consensus size: 186
14024473 GGCTTAGACA
** * *
14024483 TGGAATGAACTCCATATGGCTAAGCCAACCCACGAAACGAGCATGCG-G-GCACTCAA-CGACCG
1 TGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCATGCGAGAGCACTCAACCGACCA
* * * * *
14024545 GAGAGGCAGAATACGTAAGCCAAGGATCGATCTGATCCCCCCTACGTGCTATCGATCCTGCT-GC
66 AAGAGCCAGAATACGCAAGCCAAGGATCGACCTGATCCCCCCTACGTGCTATCGATCCTGCTATC
* *
14024609 TACAACCCTCGGTCCGATCGGATCATAGACTGGGAATGAACTTCGTACGTTTACACG
131 -ACAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTTCGTACGTTTACACG
** * * * * *
14024666 TGGAATGAACTCTGTGTACCTAAGCCAACCCATAAAACGAGCGTGCGTACGAGCGCTCAACCGAT
1 TGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCATGCG-A-GAGCACTCAACCGAC
* * * * * *
14024731 CAAAGAGCCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCCTTGCGTGCTGTCGATCCTGCTA
64 CAAAGAGCCAGAATACGCAAGCCAAGGATCGACCTGATCCCCCCTACGTGCTATCGATCCTGCTA
* * * *
14024796 TCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACT
129 TCACAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACT
14024839 CCATATGCCT
Statistics
Matches: 139, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
183 39 0.28
186 1 0.01
187 7 0.05
188 91 0.65
189 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (186 bp):
TGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCATGCGAGAGCACTCAACCGACCA
AAGAGCCAGAATACGCAAGCCAAGGATCGACCTGATCCCCCCTACGTGCTATCGATCCTGCTATC
ACAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTTCGTACGTTTACACG
Found at i:14025173 original size:26 final size:26
Alignment explanation
Indices: 14025137--14025189 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14025127 CCAATCTGAT
14025137 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
* *
14025163 CTTAGATTGGGGAAGAACTTCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
14025189 C
1 C
14025190 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:14025895 original size:26 final size:26
Alignment explanation
Indices: 14025857--14025912 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14025847 GGCTCAAAAT
* *
14025857 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTAAG
14025883 CTTAGACAT-GGAATGAACTCCGTAAG
1 CTTAGAC-TGGGAATGAACTCCGTAAG
14025909 CTTA
1 CTTA
14025913 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14026451 original size:26 final size:26
Alignment explanation
Indices: 14026422--14026474 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14026412 CCGGTCTGAA
* *
14026422 CTTAGACTTAGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTACGTATG
*
14026448 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACATAGAATGAACTACGTATG
14026474 C
1 C
14026475 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTACGTATG
Found at i:14026791 original size:158 final size:159
Alignment explanation
Indices: 14026447--14026802 Score: 391
Period size: 159 Copynumber: 2.2 Consensus size: 159
14026437 AACTCCGTAT
* * *
14026447 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGAGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGAGTACAGGCGCTTAG
* * * * * * * * *
14026512 CCAGTCGGAGAGGCAGAATGGGCAAGTCGGGGACCAGCCCTAGTCCCCCTTACGTGCTGTCGATC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGACCAACCCTAGTCCCCCTTACATGCTGCCAATC
* * * *
14026577 CTACTACCGCAACCCTTGATCCGGTCTGA
131 CCACTACCACAACCCTCGATCCGATCTGA
* * * *
14026606 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTACGGGC-CTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGAGTACAGGCGCTT-
*
14026669 AG-CAGACCGAAGAGGCATAATGCGCAAGCCGAGGA-CAACCC-AGTCCCCCTCTACATGCTGCC
64 AGCCAG-CCGAAGAGGCAGAATGCGCAAGCCGAGGACCAACCCTAGTCCCCCT-TACATGCTGCC
** * *
14026731 AATCCCGTTGCCACAACCCTCGATCCGAATGTG-
127 AATCCCACTACCACAACCCTCGATCCG-ATCTGA
*
14026764 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
14026803 ACGAAACCGG
Statistics
Matches: 163, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 9 0.06
158 75 0.46
159 79 0.48
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGAGTACAGGCGCTTAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGACCAACCCTAGTCCCCCTTACATGCTGCCAATC
CCACTACCACAACCCTCGATCCGATCTGA
Found at i:14026949 original size:26 final size:26
Alignment explanation
Indices: 14026920--14026972 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14026910 TCGGTCTGAT
*
14026920 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14026946 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14026972 C
1 C
14026973 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14027679 original size:26 final size:26
Alignment explanation
Indices: 14027641--14027693 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14027631 GGCTCAAAAT
14027641 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14027667 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
14027693 C
1 C
14027694 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14028547 original size:26 final size:26
Alignment explanation
Indices: 14028507--14028559 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14028497 CTGGTCTAAT
14028507 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14028533 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
14028559 C
1 C
14028560 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14029043 original size:26 final size:26
Alignment explanation
Indices: 14029007--14029059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14028997 CCAATTTGAT
*
14029007 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14029033 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14029059 C
1 C
14029060 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14029377 original size:339 final size:343
Alignment explanation
Indices: 14028702--14029470 Score: 927
Period size: 339 Copynumber: 2.3 Consensus size: 343
14028692 AACACTAGGA
* * *
14028702 ATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTACGGACGTTAAGTCGATCAGAAAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACATTAAGTCGACCAGAAAGG
* * * **
14028767 CATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTTTGCATGCTGTCGGGCCTGCTGCCACAAC
66 CATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCATGCTACCGGGCCTGCTGCCACAAC
* *
14028832 CCTCGGTCCCACTGGGGCTTAGAAGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
131 CCTCGATCCCACTGGAGCTTAGAAGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* * * * * *
14028897 GTGTATGGGCGCTCAGCCGATCGGATAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCGCCCC
196 GCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCGCCCC
* * *
14028962 TGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCCAATTTGATCTTAGACTGGGAATGAACTT
261 TGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTC
*
14029027 CGTATGCTTAGACTGGGG
326 CGCATGCTTAGACTGGGG
* * * * *
14029045 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCATTGAGTCGGCCGGAAAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACATTAAGTCGACCAGAAAGG
* * * * * * *
14029110 CATAATGCGTAAGTCGGGGATCGACCCAGT-CCCCTCTGCGTGCTACCGGTCCTGCTGCCATAAT
66 CATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCATGCTACCGGGCCTGCTGCCACAAC
* * * *
14029174 CCTCGATTCGACTGGAG-TTAGACA-TGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACG
131 CCTCGATCCCACTGGAGCTTAGA-AGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* * * ** * * *
14029237 GGCGTGCGGGCACTCAGCCGGCCGGAGAGGTAGAAT-CACAAGCTGGGGATCGCCCCGGTC-CCT
195 GGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCGCCC
* * ** ***
14029300 CTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACT
260 CTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACT
14029365 CCGCATGCTTAGACTGGGG
325 CCGCATGCTTAGACTGGGG
* * * * ** * *
14029384 ATGAACTCTGTATACCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTCAGTCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACATTAAGTCGACCAGAAAGG
** * *
14029449 CAGGATGCGTAAGCCGGGGATC
66 CATAATGCGCAAGCCAGGGATC
14029471 AAGTGGGTGG
Statistics
Matches: 360, Mismatches: 65, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
339 148 0.41
340 19 0.05
341 70 0.19
342 41 0.11
343 82 0.23
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACATTAAGTCGACCAGAAAGG
CATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCATGCTACCGGGCCTGCTGCCACAAC
CCTCGATCCCACTGGAGCTTAGAAGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCGCCCC
TGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTC
CGCATGCTTAGACTGGGG
Found at i:14030636 original size:26 final size:26
Alignment explanation
Indices: 14030594--14030646 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14030584 CCGGTCCGAT
*
14030594 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14030620 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14030646 C
1 C
14030647 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14030807 original size:26 final size:26
Alignment explanation
Indices: 14030778--14030830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14030768 CCGATCTGAT
* *
14030778 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14030804 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14030830 C
1 C
14030831 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14031705 original size:26 final size:26
Alignment explanation
Indices: 14031676--14031728 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14031666 CTGGTCTGAT
*
14031676 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14031702 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14031728 C
1 C
14031729 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14032058 original size:26 final size:26
Alignment explanation
Indices: 14032029--14032081 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14032019 CCGATCCGAT
14032029 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14032055 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14032081 C
1 C
14032082 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14032221 original size:195 final size:196
Alignment explanation
Indices: 14031859--14032372 Score: 732
Period size: 195 Copynumber: 2.6 Consensus size: 196
14031849 TCTGACTGGG
*
14031859 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
14031923 ACCGACGGAGAGGTAGAATGCGCAAGTCGGGGATAGGCCCGATCCCCCCTGCGTGCTGTCGATCT
66 TCAGCCAGAGAGGCAGAATGCACAAGTCGGGGACAGGCCCGATCCCCCCTACGTGCTGTCGATCT
* * * *
14031988 TGCTACTAGTCCTGCTGCCGTAACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
131 TGCTACTAGTCCTACTACCGCAACCCTAGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
14032053 T
196 T
*
14032054 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
14032119 TCAGCCAGAGAGGCAGAATGCACAAGTCGGGGACCA-GCCTGATCCCCCCTACGTGCTGTCGATC
66 TCAGCCAGAGAGGCAGAATGCACAAGTCGGGGA-CAGGCCCGATCCCCCCTACGTGCTGTCGATC
14032183 TTGCTACTAGTCCTACTACCGCAACCCTCAG-T-CGATCCGATCTTAGACTGGGAATGAACTCCG
130 TTGCTACTAGTCCTACTACCGCAACCCT-AGATCCGATCCGATCTTAGACTGGGAATGAACTCCG
14032246 TAT
194 TAT
* * * *
14032249 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14032314 TCGGCCAGAAAGGCAGAATGCATAAGTCGAGGATC-GGTCCGGTCCCCCCTATGTGCTGT
66 TCAGCCAGAGAGGCAGAATGCACAAGTCGGGGA-CAGGCCCGATCCCCCCTACGTGCTGT
14032373 TGAGCCTGCT
Statistics
Matches: 286, Mismatches: 29, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
195 205 0.72
196 79 0.28
197 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCAGCCAGAGAGGCAGAATGCACAAGTCGGGGACAGGCCCGATCCCCCCTACGTGCTGTCGATCT
TGCTACTAGTCCTACTACCGCAACCCTAGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
T
Found at i:14032607 original size:160 final size:157
Alignment explanation
Indices: 14032249--14032628 Score: 365
Period size: 160 Copynumber: 2.4 Consensus size: 157
14032239 AACTCCGTAT
* * * * *
14032249 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAG
* * ** ** * *
14032314 TCGGCCAGAAAGGCAGAATGCATAAGTCGAGGATCGGTCCGGTCCCCCCTATGTGCTGTTGAGCC
66 TCGGCCAGAAAGGCAAAATGCA-AAGCCGAGGATCGACCCAATCCCCCCTACGTGCTGTCGAGCC
* *
14032379 TGCTACCAAAACCCTCGGTCTGATCTGA
130 CGCTACCAAAACCCTCGGTCTGAGCTGA
* * * ** * *
14032407 TCTTAGA-TTGGGAATGAACTCTATACACCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGA
* * *
14032471 G-CTGGCCCGAGAGGCATAATATGC-AAGCCGAGGATTCGACCCAATCCCCCTCTGCGTGCTGTC
65 GTC-GGCCAGAAAGGCA-AA-ATGCAAAGCCGAGGA-TCGACCCAATCCCCC-CTACGTGCTGTC
* * *
14032534 G-GTCCCGCTGCCACAACCCTCGGTCTG-GCTGGG
125 GAG-CCCGCTACCAAAACCCTCGGTCTGAGCT-GA
* * *
14032567 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT
14032629 CAACAGGCCG
Statistics
Matches: 175, Mismatches: 38, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 71 0.41
159 15 0.09
160 86 0.49
161 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAG
TCGGCCAGAAAGGCAAAATGCAAAGCCGAGGATCGACCCAATCCCCCCTACGTGCTGTCGAGCCC
GCTACCAAAACCCTCGGTCTGAGCTGA
Found at i:14033792 original size:158 final size:158
Alignment explanation
Indices: 14033447--14033792 Score: 344
Period size: 159 Copynumber: 2.2 Consensus size: 158
14033437 GTGGCTCAAA
* * *
14033447 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCCCA
* * * * * ** *
14033512 GCCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCAGTCCCCTTCTACGTGCTGTCGGT
66 GCAGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCCAGTCCCC-TCTACGTGCTACCGAT
*
14033577 CCCGCTACCACAACCCTCGGTCCGGCTGGG
130 CCCGCTACCACAACCCTCGATCCGGCT-GG
* * * * * *
14033607 A-CTTACAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCA-CC
1 ATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG-AGCC
* * * * * **
14033669 CAGCATACCGGAGAGGTAGAATGCATAAGCCAAGGATCGATCTGGTCCTCC-CTGA-GTGCTACC
64 CAGCAGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCCAGTCC-CCTCT-ACGTGCTACC
* *
14033732 GATCCTGCTACCGCAACCCTCGATCCGGTCT-G
127 GATCCCGCTACCACAACCCTCGATCCGG-CTGG
14033764 ATCTTAGACTAGGAATGAACTCCGTATGC
1 ATCTTAGACTAGGAATGAACTCCGTATGC
14033793 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 29, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 55 0.37
159 89 0.59
160 4 0.03
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCCCA
GCAGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCCAGTCCCCTCTACGTGCTACCGATC
CCGCTACCACAACCCTCGATCCGGCTGG
Found at i:14033795 original size:26 final size:26
Alignment explanation
Indices: 14033766--14033818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14033756 CCGGTCTGAT
14033766 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14033792 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14033818 C
1 C
14033819 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14034080 original size:343 final size:343
Alignment explanation
Indices: 14033449--14034188 Score: 962
Period size: 343 Copynumber: 2.2 Consensus size: 343
14033439 GGCTCAAAAT
* * * * * *
14033449 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGAGCTCAGC
* * **
14033514 CGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCAGTCCCCTTCTACGTGCTGTCGGTCC
66 CGACCGAAAAGGCAGAATGCGCAAGTCAGGGATCGGCCCAGTCCCCCTCTACGTGCTACCGGTCC
*
14033579 CGCTACCACAACCCTCGGTCCGGCTGGGACTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGATCCGGCTGGGACTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
14033644 CCCATGAAACGGGTGTGCGGGCACCCAGCATACCGGAGAGGTAGAATGCATAAGCCAAGGATCGA
196 CCCACGAAACGGGCGTGCGGGAACCAAGCAGACCGGAGAGGTAGAATGCACAAGCCAAGGATCGA
* *
14033709 TCTGGTCCTCCCTGAGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACT
261 TCCGGTCCCCCCTGAGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACT
14033774 AGGAATGAACTCCGTATG
326 AGGAATGAACTCCGTATG
* * * * *
14033792 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCTTGAAACGAGCGTGCAGGCGTTGAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGAGCTCAGC
* * ** * **
14033857 CGATCGAAAAGGCATAATGCGCAAGTTGGGGATCGGTCTGGTCCCCCTCTACGTGCTACCGGTCC
66 CGACCGAAAAGGCAGAATGCGCAAGTCAGGGATCGGCCCAGTCCCCCTCTACGTGCTACCGGTCC
* *
14033922 CGCTTCCACAACCCTCGATCCGGCTGGGGA-TTAGACATGGAATGAACTCCCTATGCCTAAGCCA
131 CGCTACCACAACCCTCGATCCGGCT-GGGACTTACACATGGAATGAACTCCCTATGCCTAAGCCA
* * ** * ** ** ** *
14033986 ACCCACGAAATGGGCGTGTGGGAAGTAAGCCGGTCGGAGAGGTAGAATGTGCAA-CTCGGGGATT
195 ACCCACGAAACGGGCGTGCGGGAACCAAGCAGACCGGAGAGGTAGAATGCACAAGC-CAAGGATC
* * * **
14034050 GGTCCGGTCCCCCCTGAGTGCTATCGATCCTGCTGCCGCAACCCTCGATTTGGTCTGATCTTAGA
259 GATCCGGTCCCCCCTGAGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGA
*
14034115 CTGGGAATGAACTCCGTATG
324 CTAGGAATGAACTCCGTATG
** *
14034135 CTTAGACTAAGGATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
14034189 GAACGCTCAA
Statistics
Matches: 340, Mismatches: 55, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
342 1 0.00
343 335 0.99
344 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGAGCTCAGC
CGACCGAAAAGGCAGAATGCGCAAGTCAGGGATCGGCCCAGTCCCCCTCTACGTGCTACCGGTCC
CGCTACCACAACCCTCGATCCGGCTGGGACTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGGAACCAAGCAGACCGGAGAGGTAGAATGCACAAGCCAAGGATCGA
TCCGGTCCCCCCTGAGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACT
AGGAATGAACTCCGTATG
Found at i:14035189 original size:26 final size:26
Alignment explanation
Indices: 14035150--14035203 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14035140 GGTTCGATCT
*
14035150 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
14035176 TAGACTGGGGATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
14035202 TA
1 TA
14035204 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:14035386 original size:26 final size:26
Alignment explanation
Indices: 14035357--14035409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14035347 CTGATCCGAT
14035357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14035383 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14035409 C
1 C
14035410 CTAGGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14035884 original size:158 final size:156
Alignment explanation
Indices: 14035383--14035884 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 156
14035373 ACTCCGTATG
* * * *
14035383 CTTAGACTTGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTG-TGGGCTCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-G-GTGTTGGGCACTCAG
* * * * * * *
14035447 TCGACCGGAAAGGCAGAATGCATAAGCCAGGGATCGACC-CGATCCCCCCTGCGTGCTGTCGATC
64 CCGACCGGAGA-GCAGAATGCGTAAGCCAGGGATCGGCCTAG-TCCCCCTTACGTGCTGTCGATC
* * * * *
14035511 TTGCTACCGCAACCCTTGGTCCGATCCGAT
127 CTGCTACCGCAACCCTCGATCTGGTCCGAT
* * * * * *
14035541 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCAT-TTTGGCACTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-G-GTGTTGGGCACTCAG
* * * * * * *
14035605 CCGACCGGAGATGCATAATGCGCAAGTCATGGATTGGCCCTA-TCCCCCTCTATGTGCTG-CTGG
64 CCGACCGGAGA-GCAGAATGCGTAAGCCAGGGATCGG-CCTAGTCCCCCT-TACGTGCTGTC-GA
* * * * * * **
14035668 TCCCGCTGCCACAACCCTCGAT-TCGACTGGGG
125 TCCTGCTACCGCAACCCTCGATCTGGTC-CGAT
* * *
14035700 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACGCACGAAACGGGTGTTCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTT-GGGCACTCAG
* * *
14035764 CCGGCTGGAGAGACAGAATGCGTAAGCCGGGGATCGGCCTAGTCCCCCTTACGTGCTGTCGATCC
64 CCGACCGGAGAG-CAGAATGCGTAAGCCAGGGATCGGCCTAGTCCCCCTTACGTGCTGTCGATCC
14035829 TGCTACCGCAACCCTCGATCTGGTCCGAT
128 TGCTACCGCAACCCTCGATCTGGTCCGAT
*
14035858 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14035885 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 66, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
157 2 0.01
158 149 0.56
159 112 0.42
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTTGGGCACTCAGCC
GACCGGAGAGCAGAATGCGTAAGCCAGGGATCGGCCTAGTCCCCCTTACGTGCTGTCGATCCTGC
TACCGCAACCCTCGATCTGGTCCGAT
Found at i:14036200 original size:171 final size:170
Alignment explanation
Indices: 14035896--14036246 Score: 388
Period size: 171 Copynumber: 2.1 Consensus size: 170
14035886 TAGACTGGGG
** * * * *
14035896 ATGAACTTTGTATGCTTAAGTCAACCCATGAAAGGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCATGCGGGCACTCAGCCGACCGGAGAGG
* * * * *
14035961 CATAATGCGCAAGCTGGGGATCAGCAAGGTCACCCTCTGCGTGCTGCCGATCTCGCTACCGATCC
66 CAGAATACGCAAGCCGGGGATCACCAA-GTCACCCTCTGCGTGCGGCCGATCTCGCTACCGATCC
* * *
14036026 TGCTGCCACAACCCTCGGTCCGG-CTGGGTCTTAGACAAGGA
130 TGCTACCACAACCCTCGGTCCGGTC-CGATCTTAGACAAGGA
* * *
14036067 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCAGTCAGCCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCATGCGGGCACTCAGCCGACCGGAGAGG
* * * *
14036132 TAGAATACGCAAGCCGGGGATCGACCCAA-T--CCCTCCATGTGTGCGGTCGATC-CTGCTACTG
66 CAGAATACGCAAGCCGGGGATC-A-CCAAGTCACCCT-C-TGCGTGCGGCCGATCTC-GCTACCG
* * *
14036193 GTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGA
126 ATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACAAGGA
14036238 ATGAACTCC
1 ATGAACTCC
14036247 ATACGCTTAG
Statistics
Matches: 150, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
169 4 0.03
170 2 0.01
171 139 0.93
172 2 0.01
173 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (170 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCATGCGGGCACTCAGCCGACCGGAGAGG
CAGAATACGCAAGCCGGGGATCACCAAGTCACCCTCTGCGTGCGGCCGATCTCGCTACCGATCCT
GCTACCACAACCCTCGGTCCGGTCCGATCTTAGACAAGGA
Found at i:14036338 original size:368 final size:355
Alignment explanation
Indices: 14035672--14036342 Score: 853
Period size: 368 Copynumber: 1.9 Consensus size: 355
14035662 TGCTGGTCCC
* *
14035672 GCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAAC
* * ** * * * * *
14035737 GCACGAAACGGGTGTTCGGGCGCTCAGCCGGCTGGAGAGACAGAATGCGTAAGCCGGGGATCGGC
66 CCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGACAGAATACGCAAGCCGGGGATCGAC
* * * *
14035802 CTAGTCCCCCTTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGGTCCGATCTTAGACTG
131 CCAATCCCCCTTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTA
* * * * * *
14035867 GGAATGAACTCCATATGCTTAGACTGGGGATGAACTTTGTATGCTTAAGTCAACCCATGAAAGGA
196 GGAATGAACTCCATACGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGA
* * * *
14035932 GCGTGCGGGCACTCAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCAAGGTCACCCT
261 GCATGCGGGCAATCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCAAGGTCACCCT
14035997 CTGCGTGCTGCCGATCTCGCTACCGATCCT
326 CTGCGTGCTGCCGATCTCGCTACCGATCCT
* * * *
14036027 GCTGCCACAACCCTCGGTCCGGCTGGGTCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAAC
* **
14036092 CCACGAAATGAGCATGCGGGCAG-TCAGCCGGCCGGAGAGGTAGAATACGCAAGCCGGGGATCGA
66 CCACGAAACGAGCATGCGGGC-GCTCAGCCGGCCGGAGAGACAGAATACGCAAGCCGGGGATCGA
* * *
14036156 CCCAATCCCTCCATGTGTGCGGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGGT
130 CCCAATCCC-CC---T-TAC-GT-G---CTG-T-C-GATCCTGCTACCGCAACCCTCGATCCGGT
14036221 CCGATCTTAGACTAGGAATGAACTCCATACGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGC
182 CCGATCTTAGACTAGGAATGAACTCCATACGCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGC
*
14036285 CAACCCATGAAACGAGCATGCGGG-AGATCAGCCGGCCAGAGAGGCAGAATGCGCAAGC
246 CAACCCATGAAACGAGCATGCGGGCA-ATCAGCCGACCAGAGAGGCAGAATGCGCAAGC
14036343 CGAGGGTCGG
Statistics
Matches: 264, Mismatches: 36, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
355 116 0.44
356 3 0.01
359 1 0.00
360 2 0.01
361 2 0.01
362 1 0.00
365 3 0.01
366 1 0.00
367 2 0.01
368 132 0.50
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (355 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGACAGAATACGCAAGCCGGGGATCGAC
CCAATCCCCCTTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTA
GGAATGAACTCCATACGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGA
GCATGCGGGCAATCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCAAGGTCACCCT
CTGCGTGCTGCCGATCTCGCTACCGATCCT
Found at i:14036520 original size:184 final size:183
Alignment explanation
Indices: 14036194--14036805 Score: 762
Period size: 184 Copynumber: 3.3 Consensus size: 183
14036184 CTGCTACTGG
* * * * *
14036194 TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATACGCTTAGAC
1 TCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * * **
14036259 ATGGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGATCAGCCGGCC-
66 ATCGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTCAGCCTACCG
* * * * * *
14036322 AGAGAGGCAGAATGCGCAAGCCGAGGGTCGGCCCGATCCCCTCTACGTGAGGCCAA
130 A-AGAGGTAGAATGCGCAAGTCGAGGGTCGGCCCGATCCCC-CTGCGTGATGTCGA
* *
14036378 TCCTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
1 TCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * *
14036443 ATCGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGTGCTCAGCCTATCGA
66 ATCGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTCAGCCTACCGA
* * *
14036508 AGAGGTAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGTTGTCGA
131 AGAGGTAGAATGCGCAAGTCGAGGGTCGGCCCGAT-CCCCCTGCGTGATGTCGA
*
14036562 TCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATTAACTCCATATGCTTAGAC
1 TCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * * *
14036627 ATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTAGGCGCTCAGCCTACCGG
66 ATCGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTCAGCCTACCGA
* * * * * *
14036692 AGAGGTTGAATGCGTAAGTCG-GGGACCGACCCAGTTCCCCCTTGCGTGCTGTCGA
131 AGAGGTAGAATGCGCAAGTCGAGGG-TCGGCCC-GATCCCCC-TGCGTGATGTCGA
* * ** *
14036747 TCCTACTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGC
14036806 CTAAGTTAAC
Statistics
Matches: 375, Mismatches: 47, Indels: 11
0.87 0.11 0.03
Matches are distributed among these distances:
183 2 0.01
184 299 0.80
185 74 0.20
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (183 bp):
TCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
ATCGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTCAGCCTACCGA
AGAGGTAGAATGCGCAAGTCGAGGGTCGGCCCGATCCCCCTGCGTGATGTCGA
Found at i:14037013 original size:159 final size:157
Alignment explanation
Indices: 14036619--14037037 Score: 409
Period size: 159 Copynumber: 2.6 Consensus size: 157
14036609 AACTCCATAT
* *
14036619 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-TAGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGA-GCGCTCA
* * * * * * *
14036683 GCCTACCGGAGAGGTTGAATGCGTAAGTCGGGGACCGACCCAGTTCCCCCTTGCGTGCTGTCGAT
64 GCCAACCGGAGAGGAT-AATGCGTAAGTCGGGGATCGACCCAGATACCCCTTACGTGCTATCGAT
*
14036748 CCTACTGCCACAACCCTCGGTCCAGTCTGA
128 CCTACTGCCACAACCCTCGGTCCAGGCTGA
* ** * * *
14036778 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGAGCGTTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
*** * * * *
14036843 CTGGCCAGAGAGGCATAATGCGTAAGCCGAGGATCGACCC-GATACCCCTCTATGTGCTATC-AG
65 CCAACCGGAGAGG-ATAATGCGTAAGTCGGGGATCGACCCAGATACCCCT-TACGTGCTATCGA-
* *
14036906 TCC--CGTCGCCACAACCCTTGGTCC-GGCTAGG
127 TCCTAC-T-GCCACAACCCTCGGTCCAGGCT-GA
* * * * *
14036937 GCTTAGACGTGGAATGAACTCCCTATGCCTTACCCAACCCATGAAACGGGCATGCGAGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
*
14037002 CCAACCGGAGAGGTAGAATGCGTAAGTCGGGGATCG
65 CCAACCGGAGAGG-ATAATGCGTAAGTCGGGGATCG
14037038 GGTCAGTCCC
Statistics
Matches: 208, Mismatches: 43, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 13 0.06
159 191 0.92
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
CAACCGGAGAGGATAATGCGTAAGTCGGGGATCGACCCAGATACCCCTTACGTGCTATCGATCCT
ACTGCCACAACCCTCGGTCCAGGCTGA
Found at i:14037646 original size:26 final size:26
Alignment explanation
Indices: 14037610--14037660 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14037600 TGGTCTGATC
* *
14037610 TAGACTTGGAATGAACTCCGTATGCT
1 TAGACATGGAATGAACTCCATATGCT
14037636 TAGACATGGAATGAACTCCATATGC
1 TAGACATGGAATGAACTCCATATGC
14037661 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
TAGACATGGAATGAACTCCATATGCT
Found at i:14038147 original size:26 final size:26
Alignment explanation
Indices: 14038106--14038158 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14038096 CTGGTCTGAT
*
14038106 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACCCCGTATG
* *
14038132 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACAGGGAATGAACCCCGTATG
14038158 C
1 C
14038159 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACCCCGTATG
Found at i:14038857 original size:26 final size:26
Alignment explanation
Indices: 14038820--14038871 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14038810 GCTCAAACTT
*
14038820 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATAAACTTCGTATGC
14038846 TTAGACAT-GGAATAAACTTCGTATGC
1 TTAGAC-TGGGAATAAACTTCGTATGC
14038872 CCAAGGCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTTCGTATGC
Found at i:14039038 original size:26 final size:26
Alignment explanation
Indices: 14039002--14039054 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14038992 CCAATTAGAT
*
14039002 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14039028 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14039054 C
1 C
14039055 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14039356 original size:157 final size:158
Alignment explanation
Indices: 14039028--14040010 Score: 589
Period size: 157 Copynumber: 6.2 Consensus size: 158
14039018 ACTTCGTATG
* * * * * * * * * *
14039028 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCATGCGGGCACT-GGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * ** * * * * * * *
14039092 CAACCGGAGAGGCATAATGCGCAAG-TTAGGGATCGGCTCGATCCCCCTCTACATGCTG-CTGGT
66 CGACTGGAGAGGCAGAATGCGCAAGCCGA-GAATCGACCCGGTCCCCCT-TGCGTGCTGTC-GAT
* * ** * **
14039155 CCTGCTGCCATAACCCTCGGTCCAGTTAGGG
128 CCTGCTGCCACAACCCTTGGTCTGGTTCGAT
* *
14039186 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* **
14039250 TCGACTGGAGAGGCAGAATGCGCAAGCCGAGAATC-AGCTTGGT-CCCCTTGCGTGCTGTCGATC
65 CCGACTGGAGAGGCAGAATGCGCAAGCCGAGAATCGA-CCCGGTCCCCCTTGCGTGCTGTCGATC
* * * *
14039313 CTGCTACCGCAACCCTTGGTCTGATTAGAT
129 CTGCTGCCACAACCCTTGGTCTGGTTCGAT
* * * * * *
14039343 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
** * * *
14039408 C-AGCCAGAGAGGTAGAATGTGCAAGCCG-GAGATCGACCAGGTCCCCCCCCGTGTGCTGTCGAT
66 CGA-CTGGAGAGGCAGAATGCGCAAGCCGAGA-ATCGACCCGGT---CCCCC-T-TGC-GT-G--
* * * * *
14039471 CTTGCTGCTGGTCCTACTGCCTCAACCCTCGGTCTGGTCCGAT
120 C-TG-T-C-GATCCTGCTGCCACAACCCTTGGTCTGGTTCGAT
* * *
14039514 CTTAGACTGGGAATGAACTCCATATGCCTTAGCCAACCCATGAAACAAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* ** * * * * * * * * *
14039579 CAACCAGAGAGACAGAATGCGTAAGTCGAGGA-CCAGCCCGATCCCCCCTACGTGCTGTCAATCC
66 CGACTGGAGAGGCAGAATGCGCAAGCCGAGAATCGA-CCCGGTCCCCCTTGCGTGCTGTCGATCC
** **
14039643 TGCCACCACAA-CCTCAGTCTGG-TCGAT
130 TGCTGCCACAACCCTTGGTCTGGTTCGAT
* * ** ** * *
14039670 CTTAGACTGGGAATAAACTCCATATGCATAAGTTAACCCACAAAACGAGTGTACGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * * * *
14039735 CG-GTCGAAGAGGCAAAATGCACAAGTCGGGAATCGACCTGATCCCCCTCTACGTGCTGTCGGTC
66 CGACT-GGAGAGGCAGAATGCGCAAGCCGAGAATCGACCCGGTCCCCCT-TGCGTGCTGTCGATC
* * * *
14039799 CCGCTGCCACAA-CCTTCTGTCTGGCT-GGT
129 CTGCTGCCACAACCCTT-GGTCTGGTTCGAT
* * * * * *
14039828 CTTAGACATTGAAATGAACTCCCTATCCCTAAGCCAACCCATGAAATGA-CGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * **
14039892 CCG-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCGGTTCCCC-TGTGTACTACCGATC
65 CCGACT-GGAGAGGCAGAATGCGCAAGCCGAGAATCGACCCGGTCCCCCTTGCGTGCTGTCGATC
* * *
14039954 CTTCTGTCACAACCTTTGGTCTGGTTCGAT
129 CTGCTGCCACAACCCTTGGTCTGGTTCGAT
*
14039984 CTTAGACTGGGAATGAACTCTATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
14040011 TTAGACTGGG
Statistics
Matches: 637, Mismatches: 154, Indels: 71
0.74 0.18 0.08
Matches are distributed among these distances:
155 40 0.06
156 104 0.16
157 161 0.25
158 125 0.20
159 64 0.10
160 2 0.00
161 6 0.01
162 2 0.00
163 3 0.00
164 3 0.00
165 3 0.00
166 2 0.00
167 1 0.00
168 7 0.01
169 1 0.00
170 3 0.00
171 108 0.17
172 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGACTGGAGAGGCAGAATGCGCAAGCCGAGAATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCT
GCTGCCACAACCCTTGGTCTGGTTCGAT
Found at i:14040020 original size:26 final size:26
Alignment explanation
Indices: 14039984--14040036 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14039974 CTGGTTCGAT
*
14039984 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14040010 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14040036 C
1 C
14040037 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14040727 original size:26 final size:26
Alignment explanation
Indices: 14040689--14040741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14040679 GGCTCAAACT
14040689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14040715 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14040741 C
1 C
14040742 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14040901 original size:26 final size:26
Alignment explanation
Indices: 14040872--14040924 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14040862 CCGATTAGAT
14040872 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
14040898 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14040924 C
1 C
14040925 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14041198 original size:158 final size:158
Alignment explanation
Indices: 14041036--14041343 Score: 347
Period size: 158 Copynumber: 1.9 Consensus size: 158
14041026 CCACTGCCAT
* * * *
14041036 AACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGGCTAAGCCAACCCACGAA
1 AACCCTCGGTCCGGCTAGAGCTTACAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
**
14041100 ACGAGAGCGTG-G-GCGCTCAGTCGACTGGAGAGGCAGAATGCGCAAGCCAGGGATTAG-CTC-G
65 AC--GAGCGTGCGAGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCAGGGA-TAGAC-CAG
*
14041161 GTCCCCCCTGCGTGCTGTCGATCCTGTTGCGGC
126 GTCCCCCCCGCGTGCTGTCGATCCTGTTGCGGC
* * * *** *
14041194 AACCCTTGGTCCGGTTAGATCTTACACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCGGCTAGAGCTTACACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * *
14041259 CGAGCGTGCGAGTGCTTAGTCGGCCAGAGAGGTAGAATGTGCAAGCCAGGGATCGACCAGGTCCC
66 CGAGCGTGCGAGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATAGACCAGGTCCC
*
14041324 CCCCGTGTGCTGTCGATCCT
131 CCCCGCGTGCTGTCGATCCT
14041344 ACTGCTGGTC
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
156 7 0.06
157 5 0.04
158 112 0.90
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (158 bp):
AACCCTCGGTCCGGCTAGAGCTTACACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGAGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATAGACCAGGTCCC
CCCCGCGTGCTGTCGATCCTGTTGCGGC
Found at i:14041422 original size:26 final size:26
Alignment explanation
Indices: 14041384--14041433 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14041374 CTGATTTGAT
14041384 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
14041410 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
14041434 TGCCTTAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14041740 original size:26 final size:26
Alignment explanation
Indices: 14041711--14041763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14041701 CCGGTTAGAT
*
14041711 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14041737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14041763 C
1 C
14041764 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14042815 original size:26 final size:26
Alignment explanation
Indices: 14042777--14042829 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14042767 GGCTCAAAAT
14042777 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14042803 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14042829 C
1 C
14042830 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14043856 original size:158 final size:159
Alignment explanation
Indices: 14043510--14043856 Score: 360
Period size: 159 Copynumber: 2.2 Consensus size: 159
14043500 GGTCTGATCC
* * *
14043510 GATCTTAGACTGGGAATGAATTCCATATGCCTAAGTCAACCCATGAAACGAGCATTCGAGCGCTG
1 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGCTC
* * * * * *
14043575 AGCCGACCGGAGAGGCATAATGCGCAAGCCAAAAATCGACCCGGTCCCTCTCTACGTGCTGCCGG
66 AACCGACAGGAGAGGCAGAATGCGCAAGCCAAAAATAGACCCGGTCCCTCCCTACGTGCTGCCGA
* *
14043640 TCACGCTGGCACAACCCTCGGTCCGGTTG
131 TCACACTGCCACAACCCTCGGTCCGGTTG
** * * * * * *
14043669 GGGCTTAGTCAT-GGAATGAACTCCCTATGCCTAAG-CTAAGCCATGAAATGGGCATGCGAGTGC
1 GATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTC-AACCCATGAAACGAGCATGCGAGCGC
* **** * * *
14043732 TCAACCGACAGGAGAGGCAGAATGCGCAAGTCGGGGATAGGCCTGGTCCC-CCCTGCGTGCTGCC
64 TCAACCGACAGGAGAGGCAGAATGCGCAAGCCAAAAATAGACCCGGTCCCTCCCTACGTGCTGCC
* * *
14043796 GATC-CTACTGCCGCAACCCTCGGTTCGGTTT
129 GATCAC-ACTGCCACAACCCTCGGTCCGGTTG
*
14043827 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCATATGC
14043857 TTAGACTGGT
Statistics
Matches: 150, Mismatches: 34, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 60 0.40
159 87 0.58
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGCTC
AACCGACAGGAGAGGCAGAATGCGCAAGCCAAAAATAGACCCGGTCCCTCCCTACGTGCTGCCGA
TCACACTGCCACAACCCTCGGTCCGGTTG
Found at i:14043881 original size:26 final size:26
Alignment explanation
Indices: 14043830--14043882 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14043820 TCGGTTTGAT
**
14043830 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAATATG
14043856 CTTAGACTGGTG-ATGAACTCAATATG
1 CTTAGACTGG-GAATGAACTCAATATG
14043882 C
1 C
14043883 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Done.