Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 79 of 138
Found at i:14044522 original size:159 final size:158
Alignment explanation
Indices: 14044224--14044726 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 158
14044214 ACTCTGTATG
* * * * * * * * * *
14044224 CTTAGACAT-GGAATGAATTTCGTATGCCTAAACCTACCCACGAAATGAGCGTGCGGGTGCGCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* ** * * * *
14044288 TCGGCCTGAGAGGCAGAATACGCAAGCTAGGGA-CCGACCCGGTCTCCCCCTGCGTGCTGTCGAT
65 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAG-CCCGGTC-CCCCCTGCGTGCTGTCGAT
* *
14044352 CCTGCTGCCACAACCCTTGATCCCATCCAAT
128 CCTGCTGCCACAACCCTTGGTCCCATCCGAT
* * * * * * *
14044383 CTTGGAGTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
* * * * *
14044448 CGGTTGGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCC
66 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * * * * **
14044513 CGCTACCACAACCCTCGGTCCGCCT-GGGG
130 TGCTGCCACAACCCTTGGTCC-CATCCGAT
* * *
14044542 CTTAGACAT-GGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * * * *
14044606 CCGATCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCACCCCTACGTGCTGTCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
***
14044671 TGCTGCCGTTACCCTTGGT-CCAGTCCGAT
130 TGCTGCCACAACCCTTGGTCCCA-TCCGAT
* *
14044700 CTTAGACTGGGAATGAAATCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
14044727 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 66, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 56 0.21
159 205 0.76
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTTGGTCCCATCCGAT
Found at i:14044729 original size:26 final size:26
Alignment explanation
Indices: 14044700--14044752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14044690 CCAGTCCGAT
14044700 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
14044726 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14044752 C
1 C
14044753 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14045930 original size:158 final size:154
Alignment explanation
Indices: 14045434--14045930 Score: 415
Period size: 158 Copynumber: 3.2 Consensus size: 154
14045424 TCTGTATGCC
* * *
14045434 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCGG
1 TAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGA
* * * * * *
14045499 TCGGAGAGGCAAATGCGCAAGCTAGGGATCGGCCTGATCCCCCCTGC-AACCTATCGATCCTGTT
66 TCGGAGAGGCAAATGCGCAAGC-AGGGATAGGCCCGGTCCCCTCTGCGTA-CTATCAATCCTGTT
* * *
14045563 GTCGCAACCCTCGATCTGGTCTAATCT
129 GTCGCAACCCTCGGTCCGGTC-GATCT
* * ** * * * *
14045590 TAGACTGGGAAT-AACTCTGTATGTTTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCG
1 TAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * * * * ** *
14045654 ACCGAAGAGGCATAATGCGCAAGCCAGGGATAGGTCCGGTCCCCCTCTTCGTGCTCCCAGT-CTC
65 ATCGGAGAGGCA-AATGCGCAAG-CAGGGATAGGCCCGGT-CCCCTCTGCGTACTATCAATCCT-
** * * * **
14045718 GTTACCACAACCCTTGGTCCGGCTGGGGCT
126 GTTGTCGCAACCCTCGGTCCGG-TCGATCT
* * * ** * *
14045748 TAGACATGGAATGAACTCCCTATGCCTCAGCCAATGCATGAAACGGGCGTGCGGGCGCTCAGTCG
1 TAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * * * *
14045813 ATCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGGTCCCCTCTGCGTATTGTCAATCCTGC
65 ATCGGAGAGGCA-AATGCGCAAG-CAGGGATAGGCCCGGTCCCCTCTGCGTACTATCAATCCTGT
14045878 TGTCGCAACCCTCGGTCCGGATCGATCT
128 TGTCGCAACCCTCGGTCCGG-TCGATCT
* *
14045906 TAGAAAGGGAATGAACTCTGTATGC
1 TAGACAGGGAATGAACTCCGTATGC
14045931 TTAGACTGGC
Statistics
Matches: 255, Mismatches: 77, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
155 41 0.16
156 21 0.08
157 23 0.09
158 96 0.38
159 74 0.29
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (154 bp):
TAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGA
TCGGAGAGGCAAATGCGCAAGCAGGGATAGGCCCGGTCCCCTCTGCGTACTATCAATCCTGTTGT
CGCAACCCTCGGTCCGGTCGATCT
Found at i:14046711 original size:159 final size:158
Alignment explanation
Indices: 14046297--14046711 Score: 430
Period size: 158 Copynumber: 2.6 Consensus size: 158
14046287 ATTTCGTAGG
* * * *
14046297 CTTAGACATGTAATGAACTCCATATGCCTAAGGCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
* * * * *
14046362 CGGCCGGAGAGGTAGAATGCGCAAGTTGGGGACCGGCCCAGTCCCCCCTTGTGTGCTATCGATCT
66 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTTGTGTGCTATCGATCC
* * * *
14046427 TGCATCTGCAACCCTTGGTCCGGTCCAAT
131 CGCATCTACAACCCTCGATCCGGTCC-AT
* * *
14046456 CTTAGA-ATGGGAATGAACT-CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-TGCT-A
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCT-CTCA
* ** *
14046517 TGCCGGTCGGAGAGGCATAATATGCAAGCCGGGGATCGGCCCAGT-CCCCCTCTGTGTGCTATCG
64 -GCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCT-TGTGTGCTATCG
* * * *
14046581 GTCCCGC-TGTCACAACCCTCGATCTGGCTGGC-T
127 ATCCCGCATCT-ACAACCCTCGATCCGG-T-CCAT
* * *
14046614 TTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGGGCGTGCGGGCTCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
* ** *
14046679 CGATCAAAGAGGCAGAATGCGCAAGCTAGGGAT
66 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGAT
14046712 TGGACTGGTT
Statistics
Matches: 208, Mismatches: 37, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
157 9 0.04
158 116 0.56
159 80 0.38
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTTGTGTGCTATCGATCC
CGCATCTACAACCCTCGATCCGGTCCAT
Found at i:14046801 original size:26 final size:25
Alignment explanation
Indices: 14046772--14046823 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
14046762 CCGGTCTGAT
14046772 CTTAGACT-GGGAATGAAATCCGTATG
1 CTTAGACTAGGG-ATGAAAT-CGTATG
*
14046798 CTTAGACTAGGGATGAACTCGTATG
1 CTTAGACTAGGGATGAAATCGTATG
14046823 C
1 C
14046824 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 14 0.58
27 3 0.12
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGGATGAAATCGTATG
Found at i:14050394 original size:11 final size:11
Alignment explanation
Indices: 14050378--14050402 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14050368 CAGTTAGGCT
14050378 CTCCGATGATG
1 CTCCGATGATG
14050389 CTCCGATGATG
1 CTCCGATGATG
14050400 CTC
1 CTC
14050403 TGACAATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.28
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:14050516 original size:24 final size:24
Alignment explanation
Indices: 14050481--14050527 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
14050471 CTCAAACTTG
14050481 TTAGACTGGGAATGAACTCTGTAC
1 TTAGACTGGGAATGAACTCTGTAC
14050505 TTAGACAT-GGAATGAACTCTGTA
1 TTAGAC-TGGGAATGAACTCTGTA
14050528 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (24 bp):
TTAGACTGGGAATGAACTCTGTAC
Found at i:14051059 original size:26 final size:26
Alignment explanation
Indices: 14051030--14051082 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14051020 CCGGTCCGAT
14051030 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14051056 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14051082 C
1 C
14051083 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14051568 original size:26 final size:26
Alignment explanation
Indices: 14051532--14051584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14051522 CTGATCTGAT
14051532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14051558 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14051584 C
1 C
14051585 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14051641 original size:13 final size:13
Alignment explanation
Indices: 14051623--14051647 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14051613 GGCACTCAAC
14051623 CGGTCGGAGAGGT
1 CGGTCGGAGAGGT
14051636 CGGTCGGAGAGG
1 CGGTCGGAGAGG
14051648 CATAATATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.56, T:0.12
Consensus pattern (13 bp):
CGGTCGGAGAGGT
Found at i:14051942 original size:26 final size:26
Alignment explanation
Indices: 14051913--14051965 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14051903 CCGGTCTAAT
14051913 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACATA-GAATGAACTCCGTATG
*
14051939 CTTAGACATATAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
14051965 C
1 C
14051966 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:14053358 original size:25 final size:25
Alignment explanation
Indices: 14053324--14053371 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14053314 GATCTTAGAC
*
14053324 TGGAATGAACTCTGTATGCCTAACA
1 TGGAATGAACTCCGTATGCCTAACA
14053349 TGGAATGAACTCCGTATGCCTAA
1 TGGAATGAACTCCGTATGCCTAA
14053372 ACCAACCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
TGGAATGAACTCCGTATGCCTAACA
Found at i:14053925 original size:13 final size:13
Alignment explanation
Indices: 14053907--14053932 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14053897 GGCGCTTAGT
14053907 CGACCGGAGAGGC
1 CGACCGGAGAGGC
14053920 CGACCGGAGAGGC
1 CGACCGGAGAGGC
14053933 ATAATGCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.46, T:0.00
Consensus pattern (13 bp):
CGACCGGAGAGGC
Found at i:14054570 original size:712 final size:707
Alignment explanation
Indices: 14053134--14054598 Score: 1818
Period size: 712 Copynumber: 2.1 Consensus size: 707
14053124 GGCTCAAAAT
*
14053134 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGG-ATGAACTTCGTATGCCTAAGTCAACACACGAAACAAGCGTGCGGGCGCTTAGC
*
14053199 CGACCGGAGAGGCCGGACGAAGAGGCAGAATGCTCAAGCTAGGGATCAACCCGGTCCCCCCCTAC
65 CGACCGGAGAGGCCGGACGAAGAGGCAGAATGCACAAGCTAGGGATCAACCCGGTCCCCCCCTAC
* * * * *
14053264 GTGCTACCATCCTACTGCTAGTCCTACTGCCACAACCGTTGGTTCAGCTCGATCTTAGACTGGAA
130 GTGCTACCATCCAACTGCTAGTCCTACTGCCACAACCCTCGGTCCAGCTCAATCTTAGACTGGAA
* *
14053329 TGAACTCTGTATGCCTAACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTG
195 TGAACTCCGTATGCCTAACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGCG
* * * ***
14053394 TAGGCGATCAGTCAGCCAGAGAGGCAGAATGCACAAGTCAGGGATTGACCCGGTCCCCCCTGCGT
260 CAGGCGATCAGCCAGCCAGAGAGGCAGAATACACAAGTCAGGGACCAACCCGGTCCCCCCTGCGT
* *
14053459 GATGTCGATCCTACCATCGTAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACACCGTAT
325 GATGTCGATCCTACCATCGCAACCCTCGGTCCAGTTCAATCTTAGACTAGGAATGAACACCGTAT
* * * *
14053524 GCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCTGACCGGAGAGGCATAATGCACAAG
390 GCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAG
** * * * ** *
14053589 CTGGGGATCGACCCGGTCCCCCTCTACGTGCTATCGGTTCCACTGCCACAACCCTCGGTCTGGCT
455 CCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCCTCACTCGGGCT
*
14053654 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCT
520 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCT
* * * *
14053719 CAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCCGATCCCCCCAGCGTGCTGTTGA
585 CAGCCGCTCGGAGAGGCAGAATGCGCAAGCTGGGGATAGACCCGATCCCCCCAGCGTGCTGTCGA
** * * * * *
14053784 TCCTGCTGTCGCAACCCTTGGTTCGATCTGATCTTAGACTGGGAATGAACTCCATATG
650 TCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCAGATG
* * *
14053842 CTTAGACTGAGGATGAACTTCGTATGCCTAAGTCAACATATGAAACAAGCGTGCGGGCGCTTAGT
1 CTTAGACTG-GGATGAACTTCGTATGCCTAAGTCAACACACGAAACAAGCGTGCGGGCGCTTAGC
* * **
14053907 CGACCGGAGAGGCC-GACCGGAGAGGCATAATGCACAAG-TCAGGGATCGGCCCGGTCCCCCCCT
65 CGACCGGAGAGGCCGGA-CGAAGAGGCAGAATGCACAAGCT-AGGGATCAACCCGGTCCCCCCCT
* * * * * *
14053970 GCGTGCTACCAATCCAACTGCTGGTCCTGGC-GCCGCAACCCTCGGTCCGGTTCAATCTTAGACT
128 ACGTGCTACC-ATCCAACTGCTAGTCCT-ACTGCCACAACCCTCGGTCCAGCTCAATCTTAGACT
* * * * *
14054034 GGAATGAACTCCGTATGCTTAGAGATGGAATGAACTCCGTATGCCTAAGCTAACCTATGAAACGA
191 GGAATGAACTCCGTATGCCTA-ACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGA
* * * * * ** * **
14054099 GCGCGCGGGCGCTCAGCC-GATCGGAGAGGTAGAATACGGAAGTCGGGGACCAACTTGGTCCCCC
255 GCGCGCAGGCGATCAGCCAG-CCAGAGAGGCAGAATACACAAGTCAGGGACCAACCCGGTCCCCC
* ** **
14054163 CTTGCGT-ACTGTCGATCCTACTA-CTGCAACCCTCGGTCTGGTTTGATCTTAGACTAGGAATGA
319 C-TGCGTGA-TGTCGATCCTACCATC-GCAACCCTCGGTCCAGTTCAATCTTAGACTAGGAATGA
* * * ***
14054226 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAGCCGGTTGGAGAGGCATA
381 ACACCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGGAGAGGCATA
** *
14054291 ATGTGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGGTCCCGCTGCCACAACCCTC
446 ATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCCTC
* * *
14054356 ACTCGGGTTGGGGGCTTAGACATGGAATGAACTCCCTATGCCTAGGCCATCCCATGAAACGGGCG
511 ACTCGGGCT-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCG
* * *
14054421 TG-AGGGCGCTCAGCCGACT-GGAGAGGTAGAATGCGCAAG-TCGGGGATTAG-CCCGGTCCCTC
575 TGCA-GGCGCTCAGCCG-CTCGGAGAGGCAGAATGCGCAAGCT-GGGGA-TAGACCCGATCCCCC
*** * *
14054482 TTTCGTGTTGTCGATCCTGCTACCGTAACCCTCGGTCCTG-TCCGATCTTAGACTAGGAATGAAC
636 CAGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCC-GATCCGATCTTAGACTAGGAATGAAC
*
14054546 TTCAGATG
700 TCCAGATG
* *
14054554 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 CTTAGACT-GGGATGAACTTCGTATGCCTAAGTCAACACACGAAA
14054599 TGAGCATGCG
Statistics
Matches: 641, Mismatches: 99, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
707 3 0.00
708 120 0.19
709 63 0.10
710 88 0.14
711 169 0.26
712 193 0.30
713 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (707 bp):
CTTAGACTGGGATGAACTTCGTATGCCTAAGTCAACACACGAAACAAGCGTGCGGGCGCTTAGCC
GACCGGAGAGGCCGGACGAAGAGGCAGAATGCACAAGCTAGGGATCAACCCGGTCCCCCCCTACG
TGCTACCATCCAACTGCTAGTCCTACTGCCACAACCCTCGGTCCAGCTCAATCTTAGACTGGAAT
GAACTCCGTATGCCTAACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGCGC
AGGCGATCAGCCAGCCAGAGAGGCAGAATACACAAGTCAGGGACCAACCCGGTCCCCCCTGCGTG
ATGTCGATCCTACCATCGCAACCCTCGGTCCAGTTCAATCTTAGACTAGGAATGAACACCGTATG
CCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAGC
CAGGGATCGACCCGATCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCCTCACTCGGGCTG
GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTC
AGCCGCTCGGAGAGGCAGAATGCGCAAGCTGGGGATAGACCCGATCCCCCCAGCGTGCTGTCGAT
CCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCAGATG
Found at i:14055635 original size:26 final size:26
Alignment explanation
Indices: 14055594--14055646 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14055584 CTGGTCTAAT
*
14055594 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14055620 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14055646 C
1 C
14055647 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14056343 original size:26 final size:26
Alignment explanation
Indices: 14056306--14056356 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14056296 GCTCAAAATC
14056306 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
14056332 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
14056357 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:14056859 original size:26 final size:27
Alignment explanation
Indices: 14056806--14056859 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
14056796 CCGGTCCGAT
*
14056806 CTTAGACTTGGGAATGAACTACGTATG
1 CTTAGACTTGGGAATGAACTACGCATG
* *
14056833 CTTAGAC-TGGGGATGAACTCCGCATG
1 CTTAGACTTGGGAATGAACTACGCATG
14056859 C
1 C
14056860 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (27 bp):
CTTAGACTTGGGAATGAACTACGCATG
Found at i:14057568 original size:26 final size:26
Alignment explanation
Indices: 14057529--14057581 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14057519 GGCTCAAAAT
*
14057529 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14057555 CTTAGACATG-GAATGAGCTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
14057581 C
1 C
14057582 CGATGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14057912 original size:159 final size:156
Alignment explanation
Indices: 14057554--14058060 Score: 434
Period size: 158 Copynumber: 3.2 Consensus size: 156
14057544 AACTCTGTAT
* * * * * *
14057554 GCTTAGACATGGAATGAGCTCCGTATGCCGATGCCAACCCACGAAACAAGGGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT--GGGAGCTCAG
* * * * *
14057619 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATC-AGCCCGATCCCCCCTACGTGCTGTCGATC
64 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCGTGCTGCCGATC
* ** *
14057683 CTACTGCCACAACCCTTGGTCCGATCTGA
128 CTACTACCACAACCCTCAGTCCGAGCTGA
* * * *
14057712 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCACGTGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG--CGTGGGAGCTCA
* * *
14057776 GCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGT
63 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGAT
* * *
14057841 -CTCGCTACCACAACCCTCAGTTCG-GCTGGG
127 CCT-ACTACCACAACCCTCAGTCCGAGCT-GA
* * * * *
14057871 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGG-GCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-GGAG--CTCA
* * * **
14057935 GCCGG-CTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGAT
63 GCCGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGAT
* ** * * * * *
14057999 CCTGCTGTCGCAACCCTCAATCCAATCCGA
127 CCTACTACCACAACCCTCAGTCCGAGCTGA
* * *
14058029 TCTTAGATAGGGAATGAACTCCGTATG-CTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG
14058061 ACTGGGGATG
Statistics
Matches: 280, Mismatches: 55, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
157 10 0.04
158 148 0.53
159 119 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGAGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCTA
CTACCACAACCCTCAGTCCGAGCTGA
Found at i:14058412 original size:170 final size:171
Alignment explanation
Indices: 14058059--14058423 Score: 394
Period size: 170 Copynumber: 2.1 Consensus size: 171
14058049 CCGTATGCTA
* * * * * *
14058059 AGACTGGGGATGAATTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTACGGGCGCTTAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGCACTCAGCCAG
* * * * *
14058124 CCAGAGAGGCATAATGCGCAAGTCGGGGACTAGCTCGATCCCCCTCTGGGTGCTACCGATCCCGC
66 CCAGAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCTCTGGGTGCTACCGATCCCGC
* * * * ****
14058189 TGCCGGTCCTGCTGCCACAACATTCAGTCCAGTTGGGGCTT
131 TACCGGTCCTGCTACCACAACACTCAATCCAGTCCAAGCTT
* * *
14058230 AGCCAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCA
1 AGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGCACTCAGCCA
* * * * * *
14058294 GCCGGAG-GGCAGAATGCGCAAGCCAGGGACCAGCCCGAT-CCCTTCTTGTGTGCTGCTGATCCT
65 GCCAGAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCTC-TGGGTGCTACCGATCCC
* * * *
14058357 GCTACTGGTCCTGCTACCGCAACCCTCAATCCAGTCCAATCTT
129 GCTACCGGTCCTGCTACCACAACACTCAATCCAGTCCAAGCTT
*
14058400 AGACTGGGAATGAACTCCATATGC
1 AGACTGGGAATGAACTCCGTATGC
14058424 TTAGACATGG
Statistics
Matches: 157, Mismatches: 34, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
169 6 0.04
170 91 0.58
171 59 0.38
172 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (171 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGCACTCAGCCAG
CCAGAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCTCTGGGTGCTACCGATCCCGC
TACCGGTCCTGCTACCACAACACTCAATCCAGTCCAAGCTT
Found at i:14058766 original size:159 final size:158
Alignment explanation
Indices: 14058422--14058839 Score: 516
Period size: 159 Copynumber: 2.6 Consensus size: 158
14058412 AACTCCATAT
* * * *
14058422 GCTTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCATAAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* ** * * *
14058487 CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCC
*
14058552 TATTGCAGCAACCCTTGGTTTGATCCGA
131 TATTGCAGCAACCCTCGGTTTGATCCGA
* * * * * * *
14058580 TCTTAGACTTTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
14058645 CCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTACCCCTCTGTGTGTTGTCGGTC
66 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGT-CCCCCCTGTGTGCTGTCGATC
* * *
14058710 CTGTTGCCA-CAACCCTCGGTTTGA-CTGGG
130 CTATTG-CAGCAACCCTCGGTTTGATC-CGA
* * * * *
14058739 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCATGAAACGGGCATGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
14058804 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
66 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
14058840 GCTCGATCCC
Statistics
Matches: 217, Mismatches: 40, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
158 90 0.41
159 125 0.58
160 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCC
TATTGCAGCAACCCTCGGTTTGATCCGA
Found at i:14058903 original size:159 final size:156
Alignment explanation
Indices: 14058423--14058925 Score: 504
Period size: 159 Copynumber: 3.2 Consensus size: 156
14058413 ACTCCATATG
* * * *
14058423 CTTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCATAAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* ** *
14058488 CGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC-GGTCCCCCCTGTGTGCTGTCGATCCT
* * *
14058553 ATTGCAGCAACCCTTGGTTTGATCCGAT
130 GTTGCCGCAACCCTCGGTTTG-TCCGAT
* * * * * *
14058581 CTTAGACTTTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGTGCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
14058646 CGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTACCCCTCTGTGTGTTGTCGGTCC
66 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCG-GCCGGT-CCCCCCTGTGTGCTGTCGATCC
* * * **
14058711 TGTTGCCACAACCCTCGGTTTGACTGGGG
129 TGTTGCCGCAACCCTCGGTTTGTC-CGAT
* * * * *
14058740 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCATGAAACGGGCATGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * ** *
14058805 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCCTGCGTGCTACCGATCT
66 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC-CGGT-CCCCCCTGTGTGCTGTCGATCC
* * * * * *
14058870 TGCTACCGCAAACCTCGATCTAGTCCAAT
129 TGTTGCCGCAACCCTCGGT-TTGTCCGAT
* *
14058899 CTTAGAC-TGGGAATCAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14058926 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 65, Indels: 11
0.78 0.19 0.03
Matches are distributed among these distances:
158 90 0.33
159 181 0.66
160 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCGGTCCCCCCTGTGTGCTGTCGATCCTG
TTGCCGCAACCCTCGGTTTGTCCGAT
Found at i:14058935 original size:26 final size:26
Alignment explanation
Indices: 14058899--14058951 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14058889 CTAGTCCAAT
14058899 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
* *
14058925 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
14058951 C
1 C
14058952 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTGTATG
Found at i:14060001 original size:159 final size:155
Alignment explanation
Indices: 14059635--14060003 Score: 373
Period size: 156 Copynumber: 2.3 Consensus size: 155
14059625 AACTCCATAT
* * * * ** *
14059635 GCTTAGATGTGGAATGAACTCCGTTTACCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTTAG
1 GCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAG
* * *** * *
14059700 CTAGCTGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCGTGCTGCGATCCTG
65 CCAACCAAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTGCGTGCTGCGATCCCG
* *
14059765 CTACCGCAACCTTCGGTCTGGTCCGA
130 CTACCACAACCCTCGGTCTGGTCCGA
* * * ** *
14059791 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCACTAAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAG
* * * * *
14059856 CCAACCAAAGAGG-CGTAATGCGTAAGCCAGGGATCGACCTGGTCCCCTCCTGCGTGCTGTTGGT
65 CCAACCAAAGAGGTAG-AATGCGCAAGCCAGGGATCGACCCGGT-CCC-CCTGCGTGCTG-CGAT
* * *
14059920 CCCGCTGCCACAACCCTCGGTCTGG-CTGGG
126 CCCGCTACCACAACCCTCGGTCTGGTC-CGA
*
14059950 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
14060004 TGGGAGCTCA
Statistics
Matches: 169, Mismatches: 37, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
155 2 0.01
156 82 0.49
157 3 0.02
158 12 0.07
159 69 0.41
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (155 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAGC
CAACCAAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTGCGTGCTGCGATCCCGC
TACCACAACCCTCGGTCTGGTCCGA
Found at i:14060027 original size:159 final size:153
Alignment explanation
Indices: 14059635--14060028 Score: 369
Period size: 159 Copynumber: 2.5 Consensus size: 153
14059625 AACTCCATAT
* * * * * *
14059635 GCTTAGATGTGGAATGAACTCCGTTTACCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTTAG
1 GCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGC-TAA
* * * * * *
14059700 CTAGCTGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCGTGCTGCGATCCTG
64 CCAACCGGAGAGG-CGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTGCGTGCTGCGATCCCG
* *
14059765 CTACCGCAACCTTCGGTCTGGTCCGA
128 CTACCACAACCCTCGGTCTGGTCCGA
* * * ** *
14059791 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCA-CTAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-AGCTAA
** * * * *
14059855 GCCAACCAAAGAGGCGTAATGCGTAAGCCAGGGATCGACCTGGTCCCCTCCTGCGTGCTGTTGGT
64 -CCAACCGGAGAGGCG-AATGCGCAAGCCAGGGATCGACCCGGT-CCC-CCTGCGTGCTG-CGAT
* * *
14059920 CCCGCTGCCACAACCCTCGGTCTGG-CTGGG
124 CCCGCTACCACAACCCTCGGTCTGGTC-CGA
* *
14059950 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGAGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCT-AA
*
14060015 CCGACCGGAGAGGC
64 CCAACCGGAGAGGC
14060029 AAAAAGCGCA
Statistics
Matches: 187, Mismatches: 40, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
155 4 0.02
156 79 0.42
157 3 0.02
158 13 0.07
159 85 0.45
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (153 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTAACC
AACCGGAGAGGCGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTGCGTGCTGCGATCCCGCTA
CCACAACCCTCGGTCTGGTCCGA
Found at i:14060159 original size:26 final size:26
Alignment explanation
Indices: 14060110--14060161 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14060100 CAGTCTGATA
*
14060110 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTACGTATGC
* *
14060136 TTAGACTGGGGATGAACTATGTATGC
1 TTAGACTGGGAATGAACTACGTATGC
14060162 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGC
Found at i:14060758 original size:159 final size:156
Alignment explanation
Indices: 14060330--14060759 Score: 380
Period size: 159 Copynumber: 2.7 Consensus size: 156
14060320 AACTCCATAT
* * *
14060330 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
** * * ** * * *
14060395 CCGGTCGGAGAGGCAGAACTTGCAAGCCGGGGGATCGGTTTGATCCCCCCTATGTGCTGTCTATC
66 CCGGTCGGAGAGGCAGAA--TGCAAGCC-GGGGATCGGCCTGGTCCCCACTACATCCTATCGATC
* * * *
14060460 CTATTGTCGCAACCCTCAATCCGGTTCGA
128 CCACTGCCGCAACCCTCAATCCAGTTCGA
* * * * * *
14060489 TCTTAGA-TTGGGAATGAAC-CCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCC-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * * * *
14060552 AGCCAG-CTGGAGAGGCATAATGCACAAGCCAGGGAACGGCCCGGTCCCTCACTGCATCCTATCG
64 AACCGGTC-GGAGAGGCAGAATG--CAAGCCGGGGATCGGCCTGGTCCC-CACTACATCCTATCG
* * * * * *
14060616 GTCCCGCTGCCTCAACCCTCACTCCAGTTGGG
125 ATCCCACTGCCGCAACCCTCAATCCAGTTCGA
* * *
14060648 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTTAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* *
14060713 TCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCC
66 CCGGTCGGAGAGGCAGAATGC--AAGCCGGGGATCGGCCTGGTCCCC
14060760 CCTGCGTGCT
Statistics
Matches: 209, Mismatches: 51, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 17 0.08
159 184 0.88
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGTCGGAGAGGCAGAATGCAAGCCGGGGATCGGCCTGGTCCCCACTACATCCTATCGATCCCA
CTGCCGCAACCCTCAATCCAGTTCGA
Found at i:14060848 original size:26 final size:26
Alignment explanation
Indices: 14060807--14060859 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14060797 CCAGTCCGAT
14060807 CTTAGACTGGGAATGAAC-CTCGTATG
1 CTTAGACTGGGAATGAACTC-CGTATG
14060833 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
14060859 C
1 C
14060860 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 21 0.84
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14061583 original size:26 final size:26
Alignment explanation
Indices: 14061545--14061597 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14061535 TGCTCAAACT
14061545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14061571 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14061597 C
1 C
14061598 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14062424 original size:158 final size:157
Alignment explanation
Indices: 14061885--14062426 Score: 438
Period size: 159 Copynumber: 3.4 Consensus size: 157
14061875 GCTTGGACAT
* * ** * *
14061885 GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTACGGGTGCTCAGCCAGTCGAA
1 GGAATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGGTCGGA
* ** * * * * * *
14061949 GAGGCAGAATGAGCAAG-CGGGGGCCGACTCGGTC-CCC-CATGCAT-CTGTCAATC-CTGCTGC
65 GAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCTCCCTC-TGCGTGCTGACGATCTC-ACT-C
*
14062009 CGCAACCCTCGGTCCGATCTGATCTTAGACTG
127 CACAACCCTCGGTCCGATC-GATCTTAGACTG
* * * * ** * * *
14062041 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTTGGGCACTGAGCCGATTGGAG
1 GGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGGTCGGAG
* * * * *
14062106 AGGCATAATGTGCAAGTCGGGGATCGACCCGGTCTCCCTCTGCGTGCTGTCGGTCTCACTGCCAC
66 AGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCTCCCTCTGCGTGCTGACGATCTCACT-CCAC
* * * **
14062171 AACCCTTGGTGCGACTGGGGCTTAGACAT-
130 AACCCTCGGTCCGA-TCGATCTTAGAC-TG
* * * * * * *
14062200 GGAATGAACTCCCTATGCCGAAGC-CATCCCATGAAACGGGCATGCGGGCACTCACCCGGCCAGA
1 GGAATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGGTCGGA
* * *
14062264 GAGGCAGAATGTGGAAGCCGGGGATCGACCCAGTC-CCCTCTGCGTGTTGACGATC-CTGCTCTC
65 GAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCTCCCTCTGCGTGCTGACGATCTC-ACTC-C
* * *
14062327 ATAACCCTCGATCCAGTTCGATCTTAGACTG
128 ACAACCCTCGGTCC-GATCGATCTTAGACTG
* * **
14062358 GGAATGAACTCCGTATGGCTAACTCAACCCATGAAACGAGCATGCAGGCACTCAGGAGGTCGGAG
1 GGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGGTCGGAG
14062423 AGGC
66 AGGC
14062427 CGGCTGGAGA
Statistics
Matches: 302, Mismatches: 70, Indels: 26
0.76 0.18 0.07
Matches are distributed among these distances:
156 66 0.22
157 18 0.06
158 102 0.34
159 113 0.37
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGGTCGGAG
AGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCTCCCTCTGCGTGCTGACGATCTCACTCCACA
ACCCTCGGTCCGATCGATCTTAGACTG
Found at i:14063019 original size:26 final size:26
Alignment explanation
Indices: 14062983--14063035 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14062973 CCAGTTTGAT
14062983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14063009 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14063035 C
1 C
14063036 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14063393 original size:26 final size:26
Alignment explanation
Indices: 14063364--14063416 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14063354 CCGATCCGAT
14063364 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
14063390 CTTAGACATGGAATTAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14063416 C
1 C
14063417 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14063737 original size:159 final size:158
Alignment explanation
Indices: 14063548--14064178 Score: 438
Period size: 159 Copynumber: 3.9 Consensus size: 158
14063538 GCGGTCTGAT
* * *
14063548 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCATTCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACGAGCATGCGGGCGCTGAGC
* * * *
14063613 CAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAG-TCCCCCTCTACGTGCTATCGGTC
66 CAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATC-ACCCAGATCCCCCTCTACGTGCTACCGGTC
14063677 CCACTGCCACAACCCTCGGTTCGGTTGGGG
130 CCACTGCCACAACCCTC-GTTCGGTTGGGG
* * * * * *
14063707 CTTAGACAT-GGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGTTTAT
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACGAGCATGCGGGCGCTGAG
* * * * * * *** **
14063771 CCGGCCAGAGAGGTAGAATGCGCAGGTCGGGGATTGGCTTGATCCCCCTGTGTGCTACTGATCTT
65 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCACCCAGATCCCCC----T-CTAC-G----T
* * * *** **
14063836 GCTGCCAGTCCTACTGTTGCAACCCTCAGTTCGGTCT-GAT
120 GCTACCGGTCCCACTGCCACAACCCTC-GTTCGGT-TGGGG
*** * ** ** *
14063876 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAATGCA-TGAAACGA-C-TGTTCGGATGTTG
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACT-AAACGAGCATG--CGGGCGCTG
* * * * * * * * *
14063938 AGCCAGTCGGAGAGGCATAATGCGAAAGCCAAGGATCAACCTGATCCCCCTTTGCGTGCTATCGG
63 AGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCACCCAGATCCCCCTCTACGTGCTACCGG
* *
14064003 TCCCACTGCCATAACCCTCATTCCGGTTGGGG
128 TCCCACTGCCACAACCCTCGTT-CGGTTGGGG
* *
14064035 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCATGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACGA-GCATGCGGGCGCTGA
** * * *
14064098 GCTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCC--ATCCTCC-CTGCGTGCTACCGA
64 GCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCA-CCCAGATCCCCCTCTACGTGCTACCGG
**
14064160 TCCTGCTGCCACAACCCTC
128 TCCCACTGCCACAACCCTC
14064179 AGTCCGGTCC
Statistics
Matches: 351, Mismatches: 96, Indels: 52
0.70 0.19 0.10
Matches are distributed among these distances:
157 27 0.08
158 12 0.03
159 184 0.52
160 5 0.01
161 2 0.01
163 2 0.01
164 6 0.02
165 2 0.01
167 2 0.01
168 2 0.01
169 106 0.30
170 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACGAGCATGCGGGCGCTGAGC
CAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCACCCAGATCCCCCTCTACGTGCTACCGGTCC
CACTGCCACAACCCTCGTTCGGTTGGGG
Found at i:14064156 original size:328 final size:328
Alignment explanation
Indices: 14063539--14064170 Score: 860
Period size: 328 Copynumber: 1.9 Consensus size: 328
14063529 ACCCTCGATG
14063539 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCATTCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCATTCGG
* * ** *
14063604 GCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTACGTGC
66 ACGCTGAGCCAGTCGGAGAGGCATAATGCGAAAGCCAAGGATCAACCCAGTCCCCCTCTACGTGC
*
14063669 TATCGGTCCCACTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGC
131 TATCGGTCCCACTGCCACAACCCTCGATTCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGC
* * * * * * * *
14063734 CTAAGCCAACCCACGAAACGGGCATGCGGGCGTTTATCCGGCCAGAGAGGTAGAATGCGCAGGTC
196 CTAAGCCAACCCACAAAACAGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCC
* ** ** * * *
14063799 GGGGATTGGCTTGATCCCCCTGTGTGCTACTGATCTTGCTGCCAGTCCTACTGTTGCAACCCTCA
261 AGGGATCAGCTCCATCCCCCTGCGTGCTACCGATCCTGCTGCCAGTCCTACTGTTGCAACCCTCA
14063864 GTT
326 GTT
** ** *
14063867 CGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAATGCA-TGAAACGA-CTGTTC
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACT-AAACGAGC-ATTC
* * * * *
14063930 GGATGTTGAGCCAGTCGGAGAGGCATAATGCGAAAGCCAAGGATCAA-CCTGATCCCCCTTTGCG
64 GGACGCTGAGCCAGTCGGAGAGGCATAATGCGAAAGCCAAGGATCAACCCAG-TCCCCCTCTACG
*
14063994 TGCTATCGGTCCCACTGCCATAACCCTC-ATTCCGGTTGGGGCTTAGACATGGAATGAACTCCCT
128 TGCTATCGGTCCCACTGCCACAACCCTCGATT-CGGTTGGGGCTTAGACATGGAATGAACTCCCT
* * *
14064058 ATGCCTAAGCCAACCCACAAAACAGGCATGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCA
192 ACGCCTAAGCCAACCCACAAAACAGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCA
14064123 AGCCAGGGATCAGC-CCATCCTCCCTGCGTGCTACCGATCCTGCTGCCA
257 AGCCAGGGATCAGCTCCATCC-CCCTGCGTGCTACCGATCCTGCTGCCA
14064171 CAACCCTCAG
Statistics
Matches: 263, Mismatches: 36, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
327 11 0.04
328 252 0.96
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (328 bp):
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCATTCGG
ACGCTGAGCCAGTCGGAGAGGCATAATGCGAAAGCCAAGGATCAACCCAGTCCCCCTCTACGTGC
TATCGGTCCCACTGCCACAACCCTCGATTCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGC
CTAAGCCAACCCACAAAACAGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCC
AGGGATCAGCTCCATCCCCCTGCGTGCTACCGATCCTGCTGCCAGTCCTACTGTTGCAACCCTCA
GTT
Found at i:14064228 original size:26 final size:26
Alignment explanation
Indices: 14064192--14064247 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14064182 CCGGTCCAAT
*
14064192 CTTAGACTGGGAATGAAGTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
14064218 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14064244 CTTA
1 CTTA
14064248 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14064684 original size:356 final size:353
Alignment explanation
Indices: 14064001--14064702 Score: 784
Period size: 356 Copynumber: 2.0 Consensus size: 353
14063991 GCGTGCTATC
* * *
14064001 GGTCCCACTGCCATAACCCTCATTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCACTACCACAACCCTCATTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * *
14064066 GCCAACCCACAAAACAGGCATGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCAGGG
66 GCCAACCCACAAAACAGGCATACGAGCGCTCAACCGACCGGAGAGGCAGAATGAGCAAGCCAGGG
* * * * *
14064131 ATCAGCCCATCCTCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTA
131 ATCAGCCCATCCCCCCTACGTGCTACCGATCCTACTACCACAACCCTCAGTCCAGTCCAATCTTA
* * * * ** * *
14064196 GACTGGGAATGAAGTACGTATGCTTAGACTGGGGATGAACTTCGTATGCTTAAGTCAACCCAGGA
196 GACTGGGAATGAACTACGTATGCCTAGACTGGGAATGAACGTCGTATGCCGAAGCCAACCCACGA
* * * * * * *
14064261 AATGAGCGTGTGGGCATTCAGCCAGTCGGAGAGGCATAATGTGCAAGCCGGGGATTAGCCCGGTC
261 AATGAGCGTGCGGGCACTCAGCCAGTCGAAGAGGCAAAATGCGCAAGCCGAGGATGAGCCCGGTC
**
14064326 CCCCTCTGTGTGCTATTGATCCCGCTGCT
326 CCCC-CTCCGTGCTATTGATCCCGCTGCT
* * * *
14064355 GGTCCTACTACCACAACCCTCGA-TCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGGCTC
1 GGTCCCACTACCACAACCCTC-ATTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * * * *
14064419 AGCCAACCCACAAAA-GGAGCGTACGAGTGCTCAACCGATCGGAGAGGTAGAATGAGCAAGCCGG
65 AGCCAACCCACAAAACAG-GCATACGAGCGCTCAACCGACCGGAGAGGCAGAATGAGCAAGCCAG
* * * * **
14064483 GGATCGGCCCGATCCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTCTGAT
129 GGATCAGCCC-AT-CCCCCCTACGTGCTACCGATCCTACTACCACAACCCTCAGTCCAGTCCAAT
*
14064548 CTTAGACTGGGAATGAACTCCGTATGCCTAGACAT-GGAATGAACGTCGTATGCCGAAGCCAACC
192 CTTAGACTGGGAATGAACTACGTATGCCTAGAC-TGGGAATGAACGTCGTATGCCGAAGCCAACC
* * * * **
14064612 CACGAAGTGAGCGTGCGGGCGCTCAGCC-GATTGAAGAGGCAAAATGCGTAAGTTGAGGATCGA-
256 CACGAAATGAGCGTGCGGGCACTCAGCCAG-TCGAAGAGGCAAAATGCGCAAGCCGAGGAT-GAG
** *
14064675 CTTGGTCCCCCCTCCGTGCTGTTGATCC
319 CCCGGTCCCCCCTCCGTGCTATTGATCC
14064703 TATTGCTGCA
Statistics
Matches: 284, Mismatches: 57, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
353 1 0.00
354 114 0.40
355 18 0.06
356 149 0.52
357 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (353 bp):
GGTCCCACTACCACAACCCTCATTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACAAAACAGGCATACGAGCGCTCAACCGACCGGAGAGGCAGAATGAGCAAGCCAGGG
ATCAGCCCATCCCCCCTACGTGCTACCGATCCTACTACCACAACCCTCAGTCCAGTCCAATCTTA
GACTGGGAATGAACTACGTATGCCTAGACTGGGAATGAACGTCGTATGCCGAAGCCAACCCACGA
AATGAGCGTGCGGGCACTCAGCCAGTCGAAGAGGCAAAATGCGCAAGCCGAGGATGAGCCCGGTC
CCCCCTCCGTGCTATTGATCCCGCTGCT
Found at i:14064967 original size:159 final size:156
Alignment explanation
Indices: 14064576--14064990 Score: 365
Period size: 159 Copynumber: 2.6 Consensus size: 156
14064566 TCCGTATGCC
* * *
14064576 TAGACATGGAATGAACGT-CGTATGCCGAAGCCAACCCACGAAGTGAGCGTGCGGGCGCTCAGCC
1 TAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCGCTCGGCC
* * * * ** *
14064640 GATTGAAGAGGCAAAATGCGTAAGTTGAGGATCGACTTGGTCCCCCCTCCGTGCTGTTGATCCTA
64 GATCGAAGAGGCAAAATGCGCAAGTTG-GGATCGACTCGCTCCCCCCTCCGTGCTGCCGATCCCA
* * ** * * * *
14064705 TTGCTGCAACCCTTGGTCTGGTCTAATCT
128 CTACCACAACACTCGGTCTAGTCTAAGCT
* * *
14064734 TAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCT-GAGC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCG-GCGCTCG-GC
* * * * *
14064797 AGGTCGGAGAGGCATAATGCGCAAGTTAGGGATCGACTCGCT-CCCCCTCCGTGTGCTGCCGGTC
63 CGATCGAAGAGGCAAAATGCGCAAGTT-GGGATCGACTCGCTCCCCCCTCC--GTGCTGCCGATC
* *
14064861 CCACTACCACAACACTCGAT-TCAG-CTGAGGCT
125 CCACTACCACAACACTCGGTCT-AGTCT-AAGCT
* *
14064893 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCGGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCGCTCGGCCG
* * * *
14064958 ATCGAAGAGGTAGAATGCACAAGCTGGGGATCG
65 ATCGAAGAGGCAAAATGCGCAAG-TTGGGATCG
14064991 GCCCGGTCCC
Statistics
Matches: 204, Mismatches: 40, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
157 11 0.05
158 85 0.42
159 104 0.51
160 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (156 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCGCTCGGCCGA
TCGAAGAGGCAAAATGCGCAAGTTGGGATCGACTCGCTCCCCCCTCCGTGCTGCCGATCCCACTA
CCACAACACTCGGTCTAGTCTAAGCT
Found at i:14065195 original size:514 final size:512
Alignment explanation
Indices: 14064349--14065457 Score: 1192
Period size: 530 Copynumber: 2.2 Consensus size: 512
14064339 TATTGATCCC
* * * *
14064349 GCTGCTGGTCCTACTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
1 GCTGCCGGTCCCACTACCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
* * * * *
14064414 GGCTCAGCCAACCCACAAAAGGAGCGTACGAGTGCTCAACCGATCGGAGAGGTAGAATGAGCAAG
66 GCCTAAGCCAACCCACAAAACGAGCGTACGAGCGCTCAACCGATCGAAGAGGTAGAATGAGCAAG
14064479 CCGGGGATCGGCCCGATCCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTC
131 CCGGGGATCGGCCCGATCCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTC
14064544 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACGTCGTATGCCGAAGCCA
196 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACGTCGTATGCCGAAGCCA
** ** ** **
14064609 ACCCACGAAGTGAGCGTGCGGGCGCTCAGCCGATTGAAGAGGCAAAATGCGTAAGTTGAGGATCG
261 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCACAAGCAGAGGATCG
* * * * *
14064674 ACTTGGTCCCCCCTCCGTGCTGTTGATCCTATTG-C-T-G-C-AACCCTTGGTCT-GG-T-CT-A
326 ACTTGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGTGGCCAAACCCTTAGACTGGGATACTCA
* * * *
14064730 AT-CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCT
391 ATGATTAGACAT-GGAAAGAACTCTGTAAGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCT
* * * * * * **
14064793 GAGCAGGTCGGAGAGGCATAATGCGCAAGTTAGGG-ATCGACTCGCTCCCCCTCCGTGT
455 CAGCAGGTCAGAGAGGCAGAATACGCAAG-CAGGGTATCGACTCGATCCCCCTCCGCAT
* * *
14064851 GCTGCCGGTCCCACTACCACAACACTCGATTCAGCTGAGGCTTAGACATGGAATGAACTCCATAT
1 GCTGCCGGTCCCACTACCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
* * **
14064916 GCCTAAGCCAACCCACGAAACGAGCGTGC-AGGCGCTCGGCCGATCGAAGAGGTAGAATGCA-CA
66 GCCTAAGCCAACCCACAAAACGAGCGTACGA-GCGCTCAACCGATCGAAGAGGTAGAATG-AGCA
* * * * ** *
14064979 AGCTGGGGATCGGCCCGGTCCCTCCCTGCATGCTGTCGATCCTGCTACTGGTCCTACTGTCGTAA
129 AGCCGGGGATCGGCCCGATCCC-CCC--C-TAC-GT-G---CTGC--C-GATCCTACTACCGCAA
* * * * *
14065044 TCCTCGGT-CTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGTAATGAAC-T
182 CCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACGT
* * * * * *
14065107 CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGACCGGAGAGGCAGAATG
246 -CGTATGCCGAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAAAATG
* * * *
14065172 CACAAGCCAG-GGATCGGCTTGGTCCCCCCTATGTGCTGTCGATCCTGCTGCCGTGGCTCAAACT
310 CACAAG-CAGAGGATCGACTTGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGTGGC-CAAACC
*
14065236 CTTAGACTGGGAATGAACTCCGTATGATTAGACATGGAAAGAACTCTGTAAGCCTAAGCCAACCC
373 CTTAGACTGGG-AT--ACT-C-AATGATTAGACATGGAAAGAACTCTGTAAGCCTAAGCCAACCC
* * * *
14065301 ATGAAATGAGCGTGCGAGCGCTCAGCAGGTCAGAGAGGCAGAATACGTAAGCCGGGTATTGGCTC
433 ATGAAATGAGCGTGCGAGCGCTCAGCAGGTCAGAGAGGCAGAATACGCAAGCAGGGTATCGACTC
*
14065366 GATCCCCCTCTGCAT
498 GATCCCCCTCCGCAT
* * * * *
14065381 GCTGTCAGTCCCGCTACCACAACCCTCG-GTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
1 GCTGCCGGTCCCACTACCACAACCCTCGATTC-GGCTGGGGCTTAGACATGGAATGAACTCCATA
14065445 TGCCTAAGCCAAC
65 TGCCTAAGCCAAC
14065458 TGACAAACCG
Statistics
Matches: 494, Mismatches: 77, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
501 1 0.00
502 128 0.26
503 4 0.01
505 1 0.00
506 2 0.00
507 2 0.00
508 1 0.00
511 4 0.01
513 4 0.01
514 158 0.32
515 2 0.00
516 1 0.00
517 1 0.00
519 1 0.00
520 9 0.02
521 2 0.00
523 1 0.00
526 2 0.00
529 7 0.01
530 162 0.33
531 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (512 bp):
GCTGCCGGTCCCACTACCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
GCCTAAGCCAACCCACAAAACGAGCGTACGAGCGCTCAACCGATCGAAGAGGTAGAATGAGCAAG
CCGGGGATCGGCCCGATCCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACGTCGTATGCCGAAGCCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCACAAGCAGAGGATCG
ACTTGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGTGGCCAAACCCTTAGACTGGGATACTCA
ATGATTAGACATGGAAAGAACTCTGTAAGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTC
AGCAGGTCAGAGAGGCAGAATACGCAAGCAGGGTATCGACTCGATCCCCCTCCGCAT
Found at i:14065747 original size:26 final size:26
Alignment explanation
Indices: 14065709--14065761 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14065699 CCAGTCCGAT
*
14065709 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14065735 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14065761 C
1 C
14065762 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14066950 original size:26 final size:26
Alignment explanation
Indices: 14066921--14066973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14066911 CCGGTTCGAT
* *
14066921 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
14066947 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14066973 C
1 C
14066974 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14067330 original size:26 final size:26
Alignment explanation
Indices: 14067301--14067353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14067291 CCGGTCTGAT
*
14067301 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
14067327 CTTAGACAGGGAATGAACTCGGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14067353 C
1 C
14067354 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14067836 original size:26 final size:26
Alignment explanation
Indices: 14067790--14067867 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14067780 CCAGTTCGAT
*
14067790 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
14067815 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
*
14067841 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
14067867 C
1 C
14067868 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 8 0.16
26 42 0.84
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:14068553 original size:26 final size:26
Alignment explanation
Indices: 14068524--14068574 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14068514 CGATCTGATC
14068524 TTAGAATGGAAATGAACTCTGTATGA
1 TTAGAATGGAAATGAACTCTGTATGA
* **
14068550 TTAGACTGGGGATGAACTCTGTATG
1 TTAGAATGGAAATGAACTCTGTATG
14068575 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGAATGGAAATGAACTCTGTATGA
Found at i:14069295 original size:26 final size:26
Alignment explanation
Indices: 14069257--14069309 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14069247 GGCTCAAACT
*
14069257 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14069283 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14069309 C
1 C
14069310 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14070295 original size:158 final size:157
Alignment explanation
Indices: 14069835--14070409 Score: 511
Period size: 158 Copynumber: 3.6 Consensus size: 157
14069825 ACTCCATATT
* * * * * *
14069835 CTTAGACATGGAATAAACTCCGTATCCCTAATCCAACCCACCG-AACGAGCGTGCGGGTGCTCAG
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGTGCTCAA
* * *
14069899 CAAGC-GGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCC-CTGTGTGCTGTCAAT
65 CAGGCTGG-AGAGGCAGAATGCGCAAGCTAGGGATCGACC-GGTCCCCCTCTGTGTGCTGTCGAT
* * *
14069962 CCAAGTGCCACAACCCAT-GGTCCGGTCCAA-T
128 CC-TGTGCCACAACCC-TCGGTCCGG-CTAAGG
* * * * * * *
14069993 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGTTGAAC
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * * * * * * *
14070058 TGGTTGGAGAGGCATAATGCACGAG-TCAAGGATTGGCTCGATCACCCTCTGTGTACTATCGAT-
66 AGGCTGGAGAGGCAGAATGCGCAAGCT-AGGGATCGAC-CGGTCCCCCTCTGTGTGCTGTCGATC
**
14070121 CTCGTTGCCACAACCCTCGGTCTAGCTAAGG
129 CT-G-TGCCACAACCCTCGGTCCGGCTAAGG
* * *
14070152 CTTGGACTTGGAATGAACTGCC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAA
1 CTTAGACTTGGAATGAACT-CCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * *
14070216 C-GGCTGGAGAGGTAGAATGCGCAAGCTGGGGATCGATCCGGTCCCCCTCTGCGTGCTGTCGATC
65 CAGGCTGGAGAGGCAGAATGCGCAAGCTAGGGATCGA-CCGGTCCCCCTCTGTGTGCTGTCGATC
* **
14070280 CTGCTGCCACAACCCTCGATCCGGCTGGGG
129 CTG-TGCCACAACCCTCGGTCCGGCTAAGG
* * * * *
14070310 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAAC
1 CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* ** *
14070375 CGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCG
66 AGGCTGGAGAGGCAGAATGCGCAAGCTAGGGATCG
14070410 GCCTAAGCCC
Statistics
Matches: 333, Mismatches: 69, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 208 0.62
159 120 0.36
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
AGGCTGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCGGTCCCCCTCTGTGTGCTGTCGATCCT
GTGCCACAACCCTCGGTCCGGCTAAGG
Found at i:14070493 original size:157 final size:156
Alignment explanation
Indices: 14070151--14070496 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 156
14070141 TCTAGCTAAG
* * *
14070151 GCTTGGACTTGGAATGAACTGCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACT-CCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
** * * ** * *
14070216 CGGCTGGAGAGGTAGAATGCGCAAGCTGGGGATCGATCCGGTCCCCCTCTGCGTGCTGTCGATCC
64 CGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCCGAACCCCCTCTACATGCTGTCGATCC
* * * * *
14070281 TGCTGCCACAACCCTCGATCCGGCTGGG
129 TGCTACCAAAACCCTCCATCCGGCTAGA
*
14070309 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACT-CCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
* * *
14070374 CCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCG-GCCTAAGCCCC-CTACATGTTG-CAGAT
64 -CGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCCGAACCCCCTCTACATGCTGTC-GAT
* **
14070436 CCTGTTACCAAAACCCTCCATCCGTTTAGA
127 CCTGCTACCAAAACCCTCCATCCGGCTAGA
* *
14070466 TCTTAGACTGGGAATGAACTCTGTATGCTTA
1 GCTTAGACT-GGAATGAACTC-CTATGCTTA
14070497 GACTGGGGAT
Statistics
Matches: 157, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
156 3 0.02
157 57 0.36
158 65 0.41
159 32 0.20
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACG
GCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCCGAACCCCCTCTACATGCTGTCGATCCTG
CTACCAAAACCCTCCATCCGGCTAGA
Found at i:14070503 original size:26 final size:26
Alignment explanation
Indices: 14070467--14070519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14070457 CCGTTTAGAT
14070467 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
14070493 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14070519 C
1 C
14070520 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14070706 original size:26 final size:26
Alignment explanation
Indices: 14070677--14070729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14070667 CTCATCCGAT
14070677 CTTAGA-TTGGGAATGAACTCCGTATG
1 CTTAGACTT-GGAATGAACTCCGTATG
*
14070703 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
14070729 C
1 C
14070730 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:14071005 original size:159 final size:159
Alignment explanation
Indices: 14070702--14071364 Score: 611
Period size: 159 Copynumber: 4.2 Consensus size: 159
14070692 AACTCCGTAT
* * * * *
14070702 GCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGT-GGGCACTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGT-TCGGGCGCTCA
* ** * * * ** *
14070766 GCCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGAT-CCCATCTTGCGTGCTATCGA
65 GCAGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCTC-TGCGTGCTATCGA
* * *
14070830 TCCTGCTACCGCAACCCTCGGTCCAGTCT-GA
129 TCCTGCTGCCACAACCCTCGGTCCGGT-TGGA
* * * * * *
14070861 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGCCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTTCGGGCGCTCAG
* * * *
14070926 TCAG-CCGGAGAGGCATAATGCGCAAGCCGAGGATCAACTCGGTCCCCCTCTGCGTGCTACCGAT
66 -CAGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTATCGAT
* * * *
14070990 CTTGTTGCCATAACCCTCGGTCCGGTTGGG
130 CCTGCTGCCACAACCCTCGGTCCGGTTGGA
* * ** * * * * *
14071020 GCTTAGACAT-GAAATCAACTTTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTTA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTTCGGGCGCTCA
* * * *
14071084 GCCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCTCTGCGTGCTATCGAT
65 GCAGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTATCGAT
* * * * *
14071149 CCCGCTGCCACAACCCTAGGACCGGCTGGG
130 CCTGCTGCCACAACCCTCGGTCCGGTTGGA
* * * * *
14071179 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGACGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTTCGGGCGCTCAG
* * * * * * * *
14071244 CTGACCCGAGAGGCAGAATACACAAG-CTAGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGAT
66 CAGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCAACCCGATCCCCCTCTGCGTGCTATCGAT
** * *
14071307 CCTGCTGCCGTAACCCTCGATCCGGTTCGA
130 CCTGCTGCCACAACCCTCGGTCCGGTTGGA
* *
14071337 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
14071365 TTAGACTGGG
Statistics
Matches: 407, Mismatches: 89, Indels: 17
0.79 0.17 0.03
Matches are distributed among these distances:
158 66 0.16
159 333 0.82
160 8 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTTCGGGCGCTCAG
CAGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTATCGATC
CTGCTGCCACAACCCTCGGTCCGGTTGGA
Found at i:14071289 original size:318 final size:317
Alignment explanation
Indices: 14070702--14071333 Score: 732
Period size: 318 Copynumber: 2.0 Consensus size: 317
14070692 AACTCCGTAT
* * * * * **
14070702 GCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGTGGGCACTCAG
1 GCTTAGACATGAAATCAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
** * **
14070767 CCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCATCTTGCGTGCTATCGATC
66 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCCATCTTGCGTGCTATCGATC
* * * * * * * *
14070832 CTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
131 CCGCTACCACAACCCTAGGACCAGGCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * * * *
14070897 ACCCACGAAATGAGCGTTCGGCCGCTGAGTCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCA
196 ACCCACAAAACGAGCGTGCGGACGCTCAGTCAGCCCGAGAGGCAGAATACACAAGCAGAGGATCA
* * * *
14070962 ACTCGGTCCCCCTCTGCGTGCTACCGATCTTGTTGCCATAACCCTCGGTCCGGTTGGG
261 ACCCGGTCCCCC-CTGCGTGCTACCGATCCTGCTGCCATAACCCTCGATCCGGTTGGG
* * * ** *
14071020 GCTTAGACATGAAATCAACTTTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTTAG
1 GCTTAGACATGAAATCAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* *
14071085 CCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCAACCCGATCCC-CCTCTGCGTGCTATCGAT
66 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCCATCT-TGCGTGCTATCGAT
* * *
14071149 CCCGCTGCCACAACCCTAGGACC-GGCTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGC
130 CCCGCTACCACAACCCTAGGACCAGGCT-GAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGC
* *
14071213 CAACCCACAAAACGGGCGTGCGGACGCTCAG-CTGACCCGAGAGGCAGAATACACAAGCTAG-GG
194 CAACCCACAAAACGAGCGTGCGGACGCTCAGTCAG-CCCGAGAGGCAGAATACACAAGC-AGAGG
* ** *
14071276 ATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGATCCGGTT
257 ATCAACCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCATAACCCTCGATCCGGTT
14071334 CGATCTTAGA
Statistics
Matches: 259, Mismatches: 51, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
317 43 0.17
318 215 0.83
319 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGAAATCAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCCATCTTGCGTGCTATCGATC
CCGCTACCACAACCCTAGGACCAGGCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCA
ACCCACAAAACGAGCGTGCGGACGCTCAGTCAGCCCGAGAGGCAGAATACACAAGCAGAGGATCA
ACCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCATAACCCTCGATCCGGTTGGG
Found at i:14071374 original size:26 final size:26
Alignment explanation
Indices: 14071338--14071390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14071328 CCGGTTCGAT
14071338 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14071364 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14071390 C
1 C
14071391 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14071749 original size:26 final size:25
Alignment explanation
Indices: 14071720--14071769 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
14071710 CCGTCTGATC
14071720 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACT-CGTATGG
*
14071746 TTAGACTGGGGATGAACTCGTATG
1 TTAGACTGGGAATGAACTCGTATG
14071770 CCTAGGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (25 bp):
TTAGACTGGGAATGAACTCGTATGG
Found at i:14072183 original size:26 final size:26
Alignment explanation
Indices: 14072145--14072194 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14072135 GGTTCAAAAT
14072145 CTTAGACTGGGAATGAACTCCATAAG
1 CTTAGACTGGGAATGAACTCCATAAG
14072171 CTTAGACAT-GGAATGAACTCCATA
1 CTTAGAC-TGGGAATGAACTCCATA
14072195 TGTCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATAAG
Found at i:14072629 original size:158 final size:155
Alignment explanation
Indices: 14072170--14072616 Score: 441
Period size: 158 Copynumber: 2.8 Consensus size: 155
14072160 AACTCCATAA
* * * * * * *
14072170 GCTTAGACATGGAATGAACTCCATATGTCTAAGCCAATCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-GGGTGTGCGGGCGCTCAG
* ** * * ** * * *
14072235 CCGGTCGGAGAGGTAGAATATGCAAGCTGGGGATCGACTTGGTCCCCCTCTGCATGCTGTCGGTC
65 TC-GTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
* * * *
14072300 CCGCTGCCACAACTCTCTGTCCGGCTGG
129 CCGCTGCCATAAC-CTCGGTCCGACTAG
** * * *
14072328 GTCTTAGACACAGAATGAACCCCCTATGCCTAAGCCAACCCATGAAAAGGTGTGAGGGCGCTCAG
1 G-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAGGGTGTGCGGGCGCTCAG
* * * * * *
14072393 TCGGCTGGAGAGGAATAATGCGCAAGTC-AGGGATCGACCCGATCCCCCTCTACGTGCTG-CCAG
65 TCGTC-GGAGAGGTAGAATGCGCAAGCCGA-GGATCGACCCGATCCCCCTCTGCGTGCTGTCGA-
*
14072456 TCCCGCTGCCATAACCGTCGGTCTGACTAAG
127 TCCCGCTGCCATAACC-TCGGTCCGACT-AG
* * *
14072487 GCTTAGACATGGAATGAACTCCCTATGCCTAAACGAACCCATGAAACGGGTGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-GGGTGTGCGGGCGCTCAG
*
14072552 TCGATCGGAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATC
65 TCG-TCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
14072616 C
129 C
14072617 TGCTACCGTA
Statistics
Matches: 231, Mismatches: 48, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.02
158 129 0.56
159 96 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAGGGTGTGCGGGCGCTCAGT
CGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCC
GCTGCCATAACCTCGGTCCGACTAG
Found at i:14073411 original size:26 final size:26
Alignment explanation
Indices: 14073369--14073421 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14073359 GGCTCAAAAT
14073369 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14073395 CTTAGAC-ATGGATTGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14073421 C
1 C
14073422 CTATGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14073802 original size:159 final size:158
Alignment explanation
Indices: 14073394--14074336 Score: 719
Period size: 159 Copynumber: 6.0 Consensus size: 158
14073384 AACTCCGTAT
* * * *
14073394 GCTTAGACATGGATTGAACT-TCGTATGCCTATGCCAACCCACGAAATGAGCGTGCGAGTGCTCA
1 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
14073458 GCCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCTGGTCCCCCCCTGCGTGATG-TCGA
65 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTCG-
** ** ***
14073522 TCCTGCTATCACAACCCTTAGTCCGATTCAA
129 TCCTGCTGCCACAACCCTCGGTCCG-TTGGG
* * * * * * * *
14073553 TCTTAGAC-TAGGAATGAACTCTATATGCATAAGTCAACCCATGAAATGATCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
14073617 GCCAGTCGAAGAGGCATAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGCTAGT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTCGT
*
14073682 -CTCGCTGCCACAACCCTCAGTCCAGTTGGG
130 CCT-GCTGCCACAACCCTCGGTCC-GTTGGG
* * * * *
14073712 GCTTAGACATGGACTAAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * * *
14073777 TCGGTCGGAGAGGTAGAATGTGCAAGTCGAGGATTGACCTGGTCCCCC-ATGCATGCTAC-CGAT
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTCG-T
****
14073840 CCTGCTG-CAGCAACCCTCGGTCCGGTCCTA
130 CCTGCTGCCA-CAACCCTCGGTCC-GTTGGG
* * * * *
14073870 TCTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAATGAGCGTTC-GGTCGTT
1 GCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGT-GCT
* ** * * * * *
14073932 AAGTCGACCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCGGCGTGCTGC-C
63 CAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTC
* * * *
14073996 TGCCCTGTTGCCATAACCCTCGGTCCGACTGGG
128 -GTCCTGCTGCCACAACCCTCGGTCCG-TTGGG
* * * * *
14074029 ACTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGTGCTTAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * *
14074094 -CTGACTGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCTTCTGCGTGTTG-TCGGT
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTC-GT
* *
14074157 CCCGCTGCCACTACCCTCGGTCCGGTTGGG
130 CCTGCTGCCACAACCCTCGGTCC-GTTGGG
** * *
14074187 GCTTAGACATTAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * *
14074252 TTGGCCAGAGAGGCAGAATGAGCAGGCCGGGGATCGGCTCGATCCCCC-CTACGTGCTG-TCGAT
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTCG-T
* * *
14074315 CCTACTACCGCAACCCTCGGTC
130 CCTGCTGCCACAACCCTCGGTC
14074337 TGGTTCGATC
Statistics
Matches: 614, Mismatches: 147, Indels: 47
0.76 0.18 0.06
Matches are distributed among these distances:
157 9 0.01
158 269 0.44
159 324 0.53
160 12 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTCGTC
CTGCTGCCACAACCCTCGGTCCGTTGGG
Found at i:14074175 original size:317 final size:313
Alignment explanation
Indices: 14073395--14074248 Score: 831
Period size: 317 Copynumber: 2.7 Consensus size: 313
14073385 ACTCCGTATG
* * *
14073395 CTTAGACATGGATTGAACT-TCGTATGCCTATGCCAACCCACGAAATGAGCGTGCGAGTGCTCAG
1 CTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GTGCTCAG
* * * *
14073459 CCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCTGGTCCCCCCCTGCGTGATGTCGATC
64 CCAGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGT--CCCCCTGCGTGATGTCGATC
* ** * * *
14073524 CTGCTATCACAACCCTTAGTCCGATTCAATCTTAGACTAGGAATGAACTCTATATGCATAAGTCA
127 CTGCT-GCACAACCCTCGGTCCGGTTCAATCTTAGACT-GGAATGAACTCCATATGCCTAAGTCA
* * * * *
14073589 ACCCATGAAATGATCGTGCGGGTGCTGAGCCAGTCGAAGAGGCATAATACGCAAGCCGGGGATCG
190 ACCCACGAAATGAGCGTGCGGGTGCTAAGCCAGCCGAAGAGGCATAATACGCAAGCCAGGGATCG
* ** * * *
14073654 GCCCGGTCCCCCTTTGCGTGCTGCTAGTCTCGCTGCCACAACCCTCAGTCCAGTTGGGG
255 ACCCGGTCCCCCTCGGCGTGCTGCTAGCCTCGCTGCCACAACCCTCAGTCCAGCTGGGA
* * * * * * *
14073713 CTTAGACATGGACTAAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGTGCTCAGC
* * * * * * * **
14073778 CGGTCGGAGAGGTAGAATGTGCAAGTCGAGGATTGACCTGGTCCCCCATGCATGCTACCGATCCT
65 CAGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCC-TGCGTGATGTCGATCCT
* * *
14073843 GCTGCAGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
129 GCTGCA-CAACCCTCGGTCCGGTTCAATCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAAC
* * * * * *
14073908 CCACGAAATGAGCGTTC-GGTCGTTAAGTC-GACCGGAGAGGCATAATGCGCAAGTCAGGGATCG
192 CCACGAAATGAGCGTGCGGGT-GCTAAGCCAG-CCGAAGAGGCATAATACGCAAGCCAGGGATCG
* * *
14073971 ACCCGGTCCCCCTCGGCGTGCTGCCT-GCC-CTGTTGCCATAACCCTCGGTCC-GACTGGGA
255 ACCCGGTCCCCCTCGGCGTGCTG-CTAGCCTC-GCTGCCACAACCCTCAGTCCAG-CTGGGA
* *
14074030 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGTGCTTAG-
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGTGCTCAGC
* * * * * *
14074094 CTGACTGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCTTCTGCGTGTTGTCGGTCC
65 CAGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCC--CTGCGTGATGTCGATCC
* * **** ** * *
14074159 CGCTGCCACTACCCTCGGTCCGGTTGGGGCTTAGACATTAAATGAACTCCCTATGCCTAAGCCAA
128 TGCTG-CACAACCCTCGGTCCGGTTCAATCTTAGAC-TGGAATGAACTCCATATGCCTAAGTCAA
* *
14074224 CCCACGAAACGGGCGTGCGGGTGCT
191 CCCACGAAATGAGCGTGCGGGTGCT
14074249 CAGTTGGCCA
Statistics
Matches: 433, Mismatches: 89, Indels: 29
0.79 0.16 0.05
Matches are distributed among these distances:
316 51 0.12
317 286 0.66
318 94 0.22
319 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (313 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGCTCAGCC
AGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTGCGTGATGTCGATCCTGC
TGCACAACCCTCGGTCCGGTTCAATCTTAGACTGGAATGAACTCCATATGCCTAAGTCAACCCAC
GAAATGAGCGTGCGGGTGCTAAGCCAGCCGAAGAGGCATAATACGCAAGCCAGGGATCGACCCGG
TCCCCCTCGGCGTGCTGCTAGCCTCGCTGCCACAACCCTCAGTCCAGCTGGGA
Found at i:14075916 original size:159 final size:159
Alignment explanation
Indices: 14075487--14075918 Score: 560
Period size: 159 Copynumber: 2.7 Consensus size: 159
14075477 AACTCCGTAT
* * *
14075487 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
* *
14075552 TAGGCCGGAAAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTC
66 TAGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTC
*
14075617 CCACTGCCACAACCCTCACTTCGGCTGGG
131 CCACTGCCACAACCCTCACTTCGACTGGG
* * * * *
14075646 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGGGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
** * * * * * *
14075711 CCGGCTGGAGAGGCATAATATGCAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGCCGGTC
66 TAGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTC
* **
14075776 CCGCTGCCACAACCCTC-GGTCTGACTGGG
131 CCACTGCCACAACCCTCACTTC-GACTGGG
* * * *
14075805 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCACGAAACGGGCATGCGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
* * * ** *
14075870 TTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTCGGTCCCCCT
66 TAGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCT
14075919 ACGTGTCGAT
Statistics
Matches: 230, Mismatches: 42, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 2 0.01
159 228 0.99
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
TAGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTC
CCACTGCCACAACCCTCACTTCGACTGGG
Found at i:14076726 original size:26 final size:26
Alignment explanation
Indices: 14076684--14076736 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14076674 GGCTCAACAT
*
14076684 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14076710 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14076736 C
1 C
14076737 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14077220 original size:26 final size:26
Alignment explanation
Indices: 14077184--14077239 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14077174 GCGGTCTAAT
14077184 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14077210 CTTAGAGTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14077236 CTTA
1 CTTA
14077240 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14077431 original size:26 final size:26
Alignment explanation
Indices: 14077393--14077446 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
14077383 TCCAGTTAGA
*
14077393 GCTTAGACTGGGAATTAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
14077419 GCTTAGA-TAGGGAATGAACTCCGTAT
1 GCTTAGACT-GGGAATGAACTCCGTAT
14077445 GC
1 GC
14077447 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:14077940 original size:26 final size:26
Alignment explanation
Indices: 14077896--14077948 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14077886 CCGGTCCAAT
* *
14077896 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
14077922 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
14077948 C
1 C
14077949 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:14078828 original size:26 final size:26
Alignment explanation
Indices: 14078792--14078844 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14078782 CCGAAATGAT
14078792 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
14078818 CTTAGACTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14078844 C
1 C
14078845 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14079489 original size:158 final size:157
Alignment explanation
Indices: 14079002--14079501 Score: 420
Period size: 158 Copynumber: 3.2 Consensus size: 157
14078992 TCGGTTGGGG
* * **
14079002 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGTC-GGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTG-CGGGCGCTCA
* * * * * * * *
14079065 GCC-GACCAGAGAGGCAAAATGCGCAAGCCGAGGACCGGCCCAATGCCCCCTGCGTGCTGTCGAT
64 ACCGGTCGA-AGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGAT
** ** * *
14079129 AGTGCTACCGCAACACTCAATCC-AGTCCAAT
128 CCTGCTACCGCAAC-CTCGGTCCGA-TTCGAT
* * * * * * * * * *
14079160 CTTAGACTGGGAATGAACTCTGTATGTCTAAGTCAACTCATGAAATGAA-CGTTCGGGCACTGAA
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CAAGCGTGCGGGCGCTCAA
* * * ** * *
14079224 CCGATCGGAGAGGCATAATGCATAAGCCGGGGATCGGCTCGATCCCCCCCTGCGTGCTGCCGGTC
65 CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCCTGCGTGCTGCCGATC
* * * * **
14079289 CTGCTACCACAACCCTTGGTCCGACTGGGG
129 CTGCTACCGCAA-CCTCGGTCCGATTCGAT
* *
14079319 CTT-GACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
* * *
14079382 CCGGTCGAAAAGGCAAAATGCGCAAGCCGGGGATTGACCCGATCCCCCCTGCGTGCTGCCGATCC
65 CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
**
14079447 TGCTGTCGCAAGCCTCGGTCCGATTCGAT
130 TGCTACCGCAA-CCTCGGTCCGATTCGAT
*
14079476 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14079502 GTTAGACTAG
Statistics
Matches: 260, Mismatches: 71, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 49 0.19
158 171 0.66
159 38 0.15
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
CGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
GCTACCGCAACCTCGGTCCGATTCGAT
Found at i:14080189 original size:26 final size:26
Alignment explanation
Indices: 14080148--14080200 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14080138 CTGATCTGAT
14080148 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
14080174 CTTAGACTGGGG-ATGAACTCCGTATG
1 CTTAGAC-GGGGAATGAACTCCGTATG
14080200 C
1 C
14080201 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:14080304 original size:672 final size:667
Alignment explanation
Indices: 14078763--14080393 Score: 1997
Period size: 671 Copynumber: 2.4 Consensus size: 667
14078753 CCCTTCTATG
* * * * *
14078763 TGCTGCCGCAAACTTTGGTCCGAAATGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCG-ATTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
14078828 GGATGAAGTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTGCAGGCGCTCAGCCAGCTGGAGA
65 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC--G--GGCG----GGCA-CT---CA
* * **
14078893 GGCCGGTCGGGGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCTCCCTCTATGTGCTGTCGA
118 -GCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATC-CCCTCTGCGTGCTGTCGA
* * * * ** *
14078958 TCCCGCTGCCGGTCCTACTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACATGGAATGAACTCT
181 TCCCGCTGCCGGTCTTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCC
* * * *
14079023 GTATGCCTAAGCCAACCCACAAAATGAGCGTGTCGGCGCTCAGCCGACCAGAGAGGCAAAATGCG
246 GTATGCCTAAGCCAACCCACGAAACGA--GTATCGGCGCTCAACCGACCAGAGAGGCAAAATGCG
* * *
14079088 CAAGCCGAGGACCGGCCCAATGCCCCCTGCGTGCTGTCGATAGTGCTACCGCAACACTCAATCCA
309 CAAGCCGAGGACCGACCCAATGCCCCCTGCGTGCTGTCGATACTGCTACAGCAACACTCAATCCA
* * * *
14079153 GTCCAATCTTAGACTGGGAATGAACTCTGTATGTCTAAGTCAACTCATGAAATGAACGTTCGGGC
374 GTCCAATCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAACGTTCGGGC
* * * *
14079218 ACTGAACCGATCGGAGAGGCATAATGCATAAGCCGGGGATCGGCTCGATCCCCCCCTGCGTGCTG
439 ACTGAACCGACCGGAGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCCCCTGCATGCTA
** *
14079283 CCGGTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTGACATGGAATGAACTCCATATGCCTA
504 CCGGTCCCACTACCACAACCCTCGGTCCGACTGGGGCTTGACATGGAATGAACTCCATATGCCTA
** * *
14079348 AGCCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGGTCGAAAAGGCAAAATGCGCAAGCCGGG
569 AGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCGAAAAGGCAAAATGCGCAAGCCGAG
* *
14079413 GATTGACCCGATCCCCCCTGCGTGCTGCCGATCC
634 GATCGACCCGATCCCCCCTGCGTGCTACCGATCC
* * * * *
14079447 TGCTGTCGCAAGCCTCGGTCCGATTCGATCTTAGATTGGGAATGAACTCCGTATGGTTAGACTAG
1 TGCTGCCGCAACCCTCGGTCCGATT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
14079512 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGCCGGAGA
65 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCACTCAGCCGGTCGGAGA
* * * *
14079577 GGCATAATACGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCGGTCGGT
130 GGCATAATGCGCAAGCCGGGGATCAGCCCGAT-CCCCTCTGCGTGCTGTCGATCCCGCTGCCGGT
* *
14079642 CTTGTTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCG
194 CTTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
14079707 AACCCATGAAACGAGTATACGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACT
259 AACCCACGAAACGAGTAT-C-GGCGCTCAACCGACCAGAGAGGCAAAATGCGCAAGCCGAGGACC
* * * * * * ** ** * *
14079772 GACCCAGT-CCCCACTGTGTGTTGTCGATCCTGCTATAGTAACACTCGGTCTGGTTCAATGTTAG
322 GACCCAATGCCCC-CTGCGTGCTGTCGATACTGCTACAGCAACACTCAATCCAGTCCAATCTTAG
* ** * * *
14079836 ACTGAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGCGGGCC
386 ACTGAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAACGTTCGGGCACTGAACCGACC
* ** ** *
14079901 GGAGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCTCCCTTTGCATGCTATGGGTCCCACTG
451 GGAGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCCCCTGCATGCTACCGGTCCCACTA
* **
14079966 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCTGTATGCCTAAGCCAACCCAC
516 CCACAACCCTCGGTCCGACTGGGGCTT-GACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
** * * * * *
14080031 GAAACGGGCGTGCGGGCACTCAACCGGCCGAAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGG
580 GAAACAAGCGTGCGGGCACTCAACCGGCCGAAAAGGCAAAATGCGCAAGCCGAGGATCGACCCGA
* * *
14080096 TCCCTCCTTCGTGCTACTGATCC
645 TCCCCCCTGCGTGCTACCGATCC
* * *
14080119 TGCTGCCGTAACCCTCGGTCTGATCTGATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGAT-TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
14080184 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGGGCGGGCACTCAGCCGGTCGGAGA
65 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCACTCAGCCGGTCGGAGA
* * *
14080249 GGCATAATGCGCAAGTCGGGGATCAGCTCGATCCCTCTCTGCGTGCTGTCGATCCCGCTACCGGT
130 GGCATAATGCGCAAGCCGGGGATCAGCCCGATCCC-CTCTGCGTGCTGTCGATCCCGCTGCCGGT
* * * *
14080314 -TGTGCTACCATAACCCTCGATCCAACTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGC
194 CT-TGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
14080378 CAACCCACGAAACGAG
258 CAACCCACGAAACGAG
14080394 CGTGCGGGTG
Statistics
Matches: 811, Mismatches: 127, Indels: 30
0.84 0.13 0.03
Matches are distributed among these distances:
669 3 0.00
670 5 0.01
671 353 0.44
672 349 0.43
673 1 0.00
675 2 0.00
676 3 0.00
680 2 0.00
682 1 0.00
683 2 0.00
684 90 0.11
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (667 bp):
TGCTGCCGCAACCCTCGGTCCGATTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCACTCAGCCGGTCGGAGAG
GCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCCCGCTGCCGGTCT
TGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGTATCGGCGCTCAACCGACCAGAGAGGCAAAATGCGCAAGCCGAGGACCGACC
CAATGCCCCCTGCGTGCTGTCGATACTGCTACAGCAACACTCAATCCAGTCCAATCTTAGACTGA
GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAACGTTCGGGCACTGAACCGACCGGAGA
GGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCCCCTGCATGCTACCGGTCCCACTACCACA
ACCCTCGGTCCGACTGGGGCTTGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACA
AGCGTGCGGGCACTCAACCGGCCGAAAAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCC
CTGCGTGCTACCGATCC
Found at i:14086400 original size:10 final size:10
Alignment explanation
Indices: 14086387--14086419 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
14086377 GCTCCAGGTT
14086387 TTTTTTTTTG
1 TTTTTTTTTG
14086397 TTTTTTTTT-
1 TTTTTTTTTG
14086406 TTTTTTATTTG
1 TTTTTT-TTTG
14086417 TTT
1 TTT
14086420 ATTATTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.29
10 12 0.57
11 3 0.14
ACGTcount: A:0.03, C:0.00, G:0.06, T:0.91
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:14086439 original size:10 final size:11
Alignment explanation
Indices: 14086410--14086444 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
14086400 TTTTTTTTTT
*
14086410 TTATTTGTTTA
1 TTATTTATTTA
14086421 TTATTTATTTA
1 TTATTTATTTA
14086432 TT-TTTATTTA
1 TTATTTATTTA
14086442 TTA
1 TTA
14086445 GATTAGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:14086484 original size:5 final size:5
Alignment explanation
Indices: 14086474--14086556 Score: 53
Period size: 5 Copynumber: 15.6 Consensus size: 5
14086464 CCTTTTTACC
* * *
14086474 TTTAT TTTAT TTT-T ATTTGT TTTACT TTTCT TTATTT TTTAT TTT-T
1 TTTAT TTTAT TTTAT -TTTAT TTTA-T TTTAT TT-TAT TTTAT TTTAT
*
14086520 TTTAT TTTCACT TTTAT TTTGTT TATTAT TTTAT TTT
1 TTTAT TTT-A-T TTTAT TTT-AT T-TTAT TTTAT TTT
14086557 CTTTAAATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
4 5 0.08
5 37 0.59
6 15 0.24
7 6 0.10
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:14086507 original size:10 final size:9
Alignment explanation
Indices: 14086485--14086561 Score: 54
Period size: 9 Copynumber: 8.4 Consensus size: 9
14086475 TTATTTTATT
14086485 TTTATTTGT-
1 TTTATTT-TC
14086494 TTTACTTTTC
1 TTTA-TTTTC
14086504 TTTA-TTT-
1 TTTATTTTC
*
14086511 TTTATTTTT
1 TTTATTTTC
14086520 TTTATTTTCAC
1 TTTATTTT--C
*
14086531 TTTTATTTTG
1 -TTTATTTTC
*
14086541 TTTATTAT-
1 TTTATTTTC
14086549 TTTATTTTC
1 TTTATTTTC
14086558 TTTA
1 TTTA
14086562 AATAAAAATC
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
7 4 0.07
8 13 0.23
9 24 0.43
10 7 0.12
12 8 0.14
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (9 bp):
TTTATTTTC
Found at i:14086507 original size:25 final size:25
Alignment explanation
Indices: 14086479--14086561 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 25
14086469 TTACCTTTAT
14086479 TTTA-TTTTTATTTGTTTTACTTTTC
1 TTTATTTTTTATTTGTTTTA-TTTTC
*
14086504 TTTATTTTTTATTTTTTTTATTTTCAC
1 TTTATTTTTTATTTGTTTTATTTT--C
*
14086531 TTTTATTTTGTT-TATTATTTTATTTTC
1 -TTTATTTT-TTAT-TTGTTTTATTTTC
14086558 TTTA
1 TTTA
14086562 AATAAAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
25 8 0.16
26 18 0.36
27 2 0.04
28 9 0.18
29 13 0.26
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.77
Consensus pattern (25 bp):
TTTATTTTTTATTTGTTTTATTTTC
Found at i:14086512 original size:16 final size:17
Alignment explanation
Indices: 14086493--14086527 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
14086483 TTTTTATTTG
14086493 TTTTACTTTTCTTTATT
1 TTTTACTTTTCTTTATT
*
14086510 TTTTA-TTTTTTTTATT
1 TTTTACTTTTCTTTATT
14086526 TT
1 TT
14086528 CACTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTACTTTTCTTTATT
Found at i:14086519 original size:32 final size:33
Alignment explanation
Indices: 14086478--14086555 Score: 92
Period size: 32 Copynumber: 2.4 Consensus size: 33
14086468 TTTACCTTTA
* *
14086478 TTTTATTTTTATTTGTTTT-ACTTTTCTTTAT-T
1 TTTTATTTTTATTTATTTTCACTTTTATTT-TGT
14086510 TTTTATTTTT-TTTATTTTCACTTTTATTTTGT
1 TTTTATTTTTATTTATTTTCACTTTTATTTTGT
14086542 TTATTA-TTTTATTT
1 TT-TTATTTTTATTT
14086556 TCTTTAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
31 8 0.20
32 26 0.65
33 6 0.15
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (33 bp):
TTTTATTTTTATTTATTTTCACTTTTATTTTGT
Found at i:14086631 original size:57 final size:57
Alignment explanation
Indices: 14086573--14086975 Score: 429
Period size: 61 Copynumber: 6.7 Consensus size: 57
14086563 ATAAAAATCA
14086573 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
* * * *
14086629 AAAAAAA-ATTTTTTGAGGAAAAGTTGAATAGTATCGATTTTTTCCCCTTGAAGATCAAAATTTC
1 AAAAAAATA-TTTTTG-GGAAAAGTTGAA-AGTATC-A-ATTTT--CCTTAAAAAT-AAAGTTT-
14086693 C
57 C
* *
14086694 AAAAAAATATGTTTGGGGAAAAGGTTGAAAGTAT-AATTTTTCCTTAAAAATAAATTTTC
1 AAAAAAATAT-TTTTGGGAAAA-GTTGAAAGTATCAA-TTTTCCTTAAAAATAAAGTTTC
* *
14086753 AAAAAAAGGT-TTTTTGACGAAAAGTTGGAAAGTATCAATTTTTCCTTGAAAATAAAGTTTC
1 AAAAAAA--TATTTTTG-GGAAAAGTT-GAAAGTATCAA-TTTTCCTTAAAAATAAAGTTTC
* * *
14086814 CAAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
** *
14086871 AAAAAAATCAATTTTTTGGAGGAAAAGTTGAAAGTATCAATTTT-CTCGAAATTAAAGTTTC
1 AAAAAAAT--A-TTTTT-G-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
14086932 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTAATCAATTTTCCT
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGT-ATCAATTTTCCT
14086976 GCACAAAACA
Statistics
Matches: 296, Mismatches: 24, Indels: 51
0.80 0.06 0.14
Matches are distributed among these distances:
55 1 0.00
56 13 0.04
57 54 0.18
58 32 0.11
59 29 0.10
60 33 0.11
61 60 0.20
62 32 0.11
63 8 0.03
64 3 0.01
65 20 0.07
66 11 0.04
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (57 bp):
AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
Found at i:14086805 original size:61 final size:59
Alignment explanation
Indices: 14086570--14086972 Score: 428
Period size: 57 Copynumber: 6.7 Consensus size: 59
14086560 TAAATAAAAA
14086570 TCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAA-TTTTCCTTAAAAATAAA-TT
1 TCAAAAAAAAT-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTAAAAATAAATTT
* * * *
14086627 TCAAAAAAAATTTTTTGAGGAAAAGTTGAATAGTATCGATTTTTTCCCCTTGAAGATCAAAATT
1 TCAAAAAAAATTTTTTGAGGAAAAGTTGAA-AGTATC-AATTTTT--CCTTAAAAAT-AAATTT
* * *
14086691 TCCAAAAAAATATGTTTGGGGAAAAGGTTGAAAGTAT-AATTTTTCCTTAAAAATAAATTT
1 TCAAAAAAAAT-TTTTTGAGGAAAA-GTTGAAAGTATCAATTTTTCCTTAAAAATAAATTT
* * * *
14086751 TCAAAAAAAGGTTTTTTGACGAAAAGTTGGAAAGTATCAATTTTTCCTTGAAAATAAAGTT
1 TCAAAAAAA-ATTTTTTGAGGAAAAGTT-GAAAGTATCAATTTTTCCTTAAAAATAAATTT
* * *
14086812 TC-CAAAAAATATTTTGGGGAAAAGTTGAAAGTATCAA-TTTTCCTTAAAAATAAATTT
1 TCAAAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTAAAAATAAATTT
** * *
14086869 TCAAAAAAATCAATTTTTTGGAGGAAAAGTTGAAAGTATCAA-TTTT-CTCGAAATTAAAGTT
1 TC-AAAAAA--AATTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTTCCTTAAAAATAAATTT
*
14086930 TCAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTAATCAATTTT
1 TCAAAAAAA-ATTTTTTGAGGAAAAGTTGAAAGT-ATCAATTTT
14086973 CCTGCACAAA
Statistics
Matches: 293, Mismatches: 32, Indels: 40
0.80 0.09 0.11
Matches are distributed among these distances:
56 6 0.02
57 58 0.20
58 24 0.08
59 31 0.11
60 46 0.16
61 52 0.18
62 33 0.11
63 9 0.03
64 12 0.04
65 16 0.05
66 6 0.02
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (59 bp):
TCAAAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTAAAAATAAATTT
Found at i:14086872 original size:118 final size:116
Alignment explanation
Indices: 14086574--14086975 Score: 533
Period size: 118 Copynumber: 3.4 Consensus size: 116
14086564 TAAAAATCAA
*
14086574 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTCAAAAAAAAT
1 AAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAAT
* * *
14086638 TTTTTGAGGAAAAGTTGAATAGTATCGATTTTTTCCCCTTGAAGATCAAAATTTCC
66 TTTTTGAGGAAAAGTTGAA-AGTATC-AATTTTT--CCTTGAAAAT-AAAGTTTCC
14086694 AAAAAAATATGTTTGGGGAAAAGGTTGAAAGTAT-AATTTTTCCTTAAAAATAAATTTTCAAAAA
1 -AAAAAATAT-TTTGGGGAAAA-GTTGAAAGTATCAA-TTTTCCTTAAAAATAAATTTTCAAAAA
* *
14086758 AAGGTTTTTTGACGAAAAGTTGGAAAGTATCAATTTTTCCTTGAAAATAAAGTTTCC
62 AA-ATTTTTTGAGGAAAAGTT-GAAAGTATCAATTTTTCCTTGAAAATAAAGTTTCC
14086815 AAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATC
1 AAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAAA--
* * *
14086880 AATTTTTTGGAGGAAAAGTTGAAAGTATCAA-TTTT-CTCGAAATTAAAGTTTCA
63 AATTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAAATAAAGTTTCC
*
14086933 AAAAAATATTTTTAGGGAAAAGTTGAAAGTAATCAATTTTCCT
1 AAAAAATA-TTTTGGGGAAAAGTTGAAAGT-ATCAATTTTCCT
14086976 GCACAAAACA
Statistics
Matches: 256, Mismatches: 12, Indels: 27
0.87 0.04 0.09
Matches are distributed among these distances:
118 56 0.22
119 43 0.17
120 38 0.15
121 28 0.11
122 21 0.08
123 28 0.11
124 17 0.07
125 22 0.09
126 3 0.01
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (116 bp):
AAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAAT
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAAATAAAGTTTCC
Found at i:14096050 original size:16 final size:16
Alignment explanation
Indices: 14096025--14096135 Score: 95
Period size: 16 Copynumber: 6.9 Consensus size: 16
14096015 ACTATGCTTG
*
14096025 AAAAAAATGAAAAAA-
1 AAAAAGATGAAAAAAT
*
14096040 AAAAATGATGAAATAAAA
1 AAAAA-GATGAAA-AAAT
14096058 AAAAAGA-GAAAAAAT
1 AAAAAGATGAAAAAAT
14096073 GAAAAA-ATGAAAAAAT
1 -AAAAAGATGAAAAAAT
* *
14096089 AAAAAAATAAAAAAAAT
1 AAAAAGAT-GAAAAAAT
* *
14096106 AAAAAAAATGAAAAAAG
1 -AAAAAGATGAAAAAAT
14096123 AAAAAG-TGAAAAA
1 AAAAAGATGAAAAA
14096136 GGAAGACTCA
Statistics
Matches: 82, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
15 21 0.26
16 30 0.37
17 18 0.22
18 13 0.16
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAAAGATGAAAAAAT
Found at i:14096135 original size:34 final size:33
Alignment explanation
Indices: 14096025--14096127 Score: 111
Period size: 34 Copynumber: 3.2 Consensus size: 33
14096015 ACTATGCTTG
* ** *
14096025 AAAAAAATGAAAAAAA-AAAATGATGAAATAA-
1 AAAAAAATAAAAAAAATAAAAAAATGAAAAAAT
* * *
14096056 AAAAAAAGAGAAAAAATGAAAAAATGAAAAAAT
1 AAAAAAATAAAAAAAATAAAAAAATGAAAAAAT
*
14096089 AAAAAAATAAAAAAAATAAAAAAAATGAAAAAAG
1 AAAAAAATAAAAAAAAT-AAAAAAATGAAAAAAT
14096123 AAAAA
1 AAAAA
14096128 GTGAAAAAGG
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
31 13 0.22
32 11 0.19
33 15 0.26
34 19 0.33
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.10
Consensus pattern (33 bp):
AAAAAAATAAAAAAAATAAAAAAATGAAAAAAT
Found at i:14096136 original size:8 final size:8
Alignment explanation
Indices: 14096026--14096135 Score: 86
Period size: 8 Copynumber: 13.6 Consensus size: 8
14096016 CTATGCTTGA
14096026 AAAAAATG
1 AAAAAATG
14096034 AAAAAA--
1 AAAAAATG
14096040 AAAAATGATG
1 AAAAA--ATG
14096050 AAATAAA--
1 AAA-AAATG
*
14096057 AAAAAAGAG
1 AAAAAA-TG
14096066 AAAAAATG
1 AAAAAATG
14096074 AAAAAATG
1 AAAAAATG
*
14096082 AAAAAATA
1 AAAAAATG
*
14096090 AAAAAATAA
1 AAAAAAT-G
*
14096099 AAAAAATAA
1 AAAAAAT-G
14096108 AAAAAATG
1 AAAAAATG
14096116 AAAAAA-G
1 AAAAAATG
*
14096123 AAAAAGTG
1 AAAAAATG
14096131 AAAAA
1 AAAAA
14096136 GGAAGACTCA
Statistics
Matches: 88, Mismatches: 4, Indels: 20
0.79 0.04 0.18
Matches are distributed among these distances:
6 8 0.09
7 9 0.10
8 42 0.48
9 24 0.27
10 3 0.03
11 2 0.02
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:14097221 original size:42 final size:41
Alignment explanation
Indices: 14097139--14097481 Score: 508
Period size: 42 Copynumber: 8.1 Consensus size: 41
14097129 ATGATTGTCA
* *
14097139 AGGAGCAATTTACTTTTCAAAGTCGTGGTGACTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
14097180 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
14097222 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
14097263 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
14097305 AGAAGCAATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTG-C-C---TCTGTTTAG
14097350 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
* * *
14097392 AGGAGCAATTTATTTTTCCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
* * *
14097434 AGGAGCAATTTATTTTTTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTTTCAAAGTCGTGGTGCCTCTGTTTAG
14097476 AGGAGC
1 AGGAGC
14097482 TTTGGTTAAA
Statistics
Matches: 284, Mismatches: 7, Indels: 21
0.91 0.02 0.07
Matches are distributed among these distances:
40 12 0.04
41 64 0.23
42 163 0.57
43 6 0.02
45 22 0.08
46 5 0.02
47 12 0.04
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:14097278 original size:83 final size:83
Alignment explanation
Indices: 14097139--14097481 Score: 528
Period size: 83 Copynumber: 4.1 Consensus size: 83
14097129 ATGATTGTCA
* *
14097139 AGGAGCAATTTACTTTTCAAAGTCGTGGTGACTCTATTTAGAGGAGCAATTTACTTTTCAAAAGT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
14097204 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
14097222 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
14097287 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
*
14097305 AGAAGCAATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTCTGTTTAGAGGAGCAATTTACTTTTCA
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTG-C-C---TCTGTTTAGAGGAGCAATTTACTTTTCA
14097369 AAAGTCGTGGTGCCTCTGTTTAG
61 AAAGTCGTGGTGCCTCTGTTTAG
* * * *
14097392 AGGAGCAATTTATTTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCAATTTATTTTTTC-AAA
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTTCAAAA
* *
14097456 GTCGTTGAGCCTCTGTTTAG
64 GTCGTGGTGCCTCTGTTTAG
14097476 AGGAGC
1 AGGAGC
14097482 TTTGGTTAAA
Statistics
Matches: 242, Mismatches: 10, Indels: 15
0.91 0.04 0.06
Matches are distributed among these distances:
82 16 0.07
83 94 0.39
84 49 0.20
85 5 0.02
87 63 0.26
88 4 0.02
89 11 0.05
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (83 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:14097543 original size:19 final size:18
Alignment explanation
Indices: 14097492--14097550 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
14097482 TTTGGTTAAA
14097492 AAAAAATAAAAACAAAAAC
1 AAAAAATAAAAA-AAAAAC
*
14097511 AAAAGCAA-ACAAAAAAAAC
1 AAAA--AATAAAAAAAAAAC
* *
14097530 AAAAAATATAAAAAAATC
1 AAAAAATAAAAAAAAAAC
14097548 AAA
1 AAA
14097551 CAATGAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 2 0.06
18 12 0.35
19 14 0.41
20 4 0.12
21 2 0.06
ACGTcount: A:0.81, C:0.10, G:0.02, T:0.07
Consensus pattern (18 bp):
AAAAAATAAAAAAAAAAC
Found at i:14097551 original size:31 final size:32
Alignment explanation
Indices: 14097490--14097553 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
14097480 GCTTTGGTTA
14097490 AAAAAAAATAAAAACAAAAACAAAAGCAAACA
1 AAAAAAAATAAAAACAAAAACAAAAGCAAACA
* * *
14097522 AAAAAAACA-AAAAATATAAA-AAAATCAAACA
1 AAAAAAA-ATAAAAACAAAAACAAAAGCAAACA
14097553 A
1 A
14097554 TGAAAATGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 11 0.39
32 16 0.57
33 1 0.04
ACGTcount: A:0.81, C:0.11, G:0.02, T:0.06
Consensus pattern (32 bp):
AAAAAAAATAAAAACAAAAACAAAAGCAAACA
Found at i:14097717 original size:9 final size:9
Alignment explanation
Indices: 14097703--14097735 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
14097693 AAGTCCAATT
*
14097703 TTATTTTTG
1 TTATTTTTA
14097712 TTATTTTTA
1 TTATTTTTA
14097721 TT-TTTTTA
1 TTATTTTTA
14097729 TTATTTT
1 TTATTTT
14097736 ATTCTATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (9 bp):
TTATTTTTA
Found at i:14097728 original size:23 final size:23
Alignment explanation
Indices: 14097701--14097747 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
14097691 GTAAGTCCAA
* *
14097701 TTTTATTTTTGTTATT-TTTATTT
1 TTTTATTATT-TTATTCTATATTT
14097724 TTTTATTATTTTATTCTATATTT
1 TTTTATTATTTTATTCTATATTT
14097747 T
1 T
14097748 ATGTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (23 bp):
TTTTATTATTTTATTCTATATTT
Found at i:14097758 original size:13 final size:12
Alignment explanation
Indices: 14097719--14097760 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
14097709 TTGTTATTTT
*
14097719 TATTTTTTTAT-
1 TATTTTATTATA
*
14097730 TATTTTATTCTA
1 TATTTTATTATA
14097742 TATTTTATGTATA
1 TATTTTAT-TATA
14097755 TATTTT
1 TATTTT
14097761 CCTTTATATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 9 0.35
12 8 0.31
13 9 0.35
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (12 bp):
TATTTTATTATA
Found at i:14097789 original size:4 final size:4
Alignment explanation
Indices: 14097776--14097850 Score: 54
Period size: 4 Copynumber: 18.8 Consensus size: 4
14097766 ATATCCTATG
14097776 TATT TA-T TATT TATT TA-T TATT ACTATT TATT AATATT TATT T-TT
1 TATT TATT TATT TATT TATT TATT --TATT TATT --TATT TATT TATT
14097821 TATTT TATT TATT T-TT GTA-T T-TT TATT TAT
1 TA-TT TATT TATT TATT -TATT TATT TATT TAT
14097851 CTAATTATAT
Statistics
Matches: 59, Mismatches: 0, Indels: 24
0.71 0.00 0.29
Matches are distributed among these distances:
3 14 0.24
4 33 0.56
5 4 0.07
6 8 0.14
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:14097798 original size:14 final size:14
Alignment explanation
Indices: 14097779--14097890 Score: 70
Period size: 14 Copynumber: 7.8 Consensus size: 14
14097769 TCCTATGTAT
14097779 TTATTATTTATTTA
1 TTATTATTTATTTA
*
14097793 TTATTA-CTATTTA
1 TTATTATTTATTTA
* *
14097806 TTAATATTTATTTT
1 TTATTATTTATTTA
*
14097820 TTATTTTATTTATTTT
1 TTA--TTATTTATTTA
14097836 TGTATT-TTTATTTA
1 T-TATTATTTATTTA
* * *
14097850 TCTAATTATATATCTG
1 T-T-ATTATTTATTTA
14097866 TTATTATCATTATTT-
1 TTATTAT--TTATTTA
14097881 TT-TTATTTAT
1 TTATTATTTAT
14097891 CCTATAATAT
Statistics
Matches: 78, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
12 4 0.05
13 11 0.14
14 32 0.41
15 8 0.10
16 21 0.27
17 2 0.03
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.69
Consensus pattern (14 bp):
TTATTATTTATTTA
Found at i:14097818 original size:27 final size:26
Alignment explanation
Indices: 14097783--14097833 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
14097773 ATGTATTTAT
14097783 TATTTATTTATTATTACTATTTATTAA
1 TATTTATTTATTATT-CTATTTATTAA
* *
14097810 TATTTATTTTTTATTTTATTTATT
1 TATTTATTTATTATTCTATTTATT
14097834 TTTGTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (26 bp):
TATTTATTTATTATTCTATTTATTAA
Found at i:14097822 original size:17 final size:16
Alignment explanation
Indices: 14097776--14097841 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 16
14097766 ATATCCTATG
*
14097776 TATTTATTATTTATT-
1 TATTTATTTTTTATTA
14097791 TA-TTATTACTATTTATTAA
1 TATTTATT--T-TTTATT-A
*
14097810 TATTTATTTTTTATTT
1 TATTTATTTTTTATTA
14097826 TATTTATTTTTGTATT
1 TATTTATTTTT-TATT
14097842 TTTATTTATC
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
14 5 0.12
15 2 0.05
16 11 0.26
17 16 0.38
18 1 0.02
19 2 0.05
20 5 0.12
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (16 bp):
TATTTATTTTTTATTA
Found at i:14098298 original size:19 final size:19
Alignment explanation
Indices: 14098261--14098298 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14098251 CCAAATTCTG
*
14098261 GTTGAATTTTCCGATGAAA
1 GTTGAATTTTCCGACGAAA
*
14098280 GTTGAATTTTTCGACGAAA
1 GTTGAATTTTCCGACGAAA
14098299 ATTTCGGCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (19 bp):
GTTGAATTTTCCGACGAAA
Found at i:14098824 original size:30 final size:30
Alignment explanation
Indices: 14098788--14098844 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
14098778 TTTACTTTTC
* *
14098788 TTTATTTTATTTTATTTTTTTATTTTCACT
1 TTTATTTGATTTTATTATTTTATTTTCACT
*
14098818 TTTATTTGGTTTTATTATTTTATTTTC
1 TTTATTTGATTTTATTATTTTATTTTC
14098845 TTTAAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.05, G:0.04, T:0.75
Consensus pattern (30 bp):
TTTATTTGATTTTATTATTTTATTTTCACT
Found at i:14099037 original size:58 final size:58
Alignment explanation
Indices: 14098944--14099118 Score: 269
Period size: 58 Copynumber: 2.9 Consensus size: 58
14098934 TTAGGAAAAG
* *
14098944 AATTTTCCTTGAAGATCAAAATTTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
1 AATTTTCCTTGAAAAT--AAA-TTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATC
*
14099005 AATTTTCCTTGAAAATAAATTTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATC
1 AATTTTCCTTGAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATC
*
14099063 AATTTTCCTTAAAAATAAATTTTCAAAAAAATCAATTTTTGGGGAAAAGTTGAAAG
1 AATTTTCCTTGAAAATAAATTTTCAAAAAAAT--ATTTTTGGGGAAAAGTTGAAAG
14099119 GGAAAAGTTG
Statistics
Matches: 107, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
58 67 0.63
59 3 0.03
60 22 0.21
61 15 0.14
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.35
Consensus pattern (58 bp):
AATTTTCCTTGAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATC
Found at i:14099100 original size:74 final size:73
Alignment explanation
Indices: 14099016--14099175 Score: 212
Period size: 74 Copynumber: 2.2 Consensus size: 73
14099006 ATTTTCCTTG
* ****
14099016 AAAATAAATTTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA
1 AAAATCAATTTTCCAAAAAA-ATTGAAAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA
14099081 ATTTTCAAA
65 ATTTTCAAA
**** *
14099090 AAAATCAATTTTTGGGGAAAAGTTGAAAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA
1 AAAATCAA-TTTTCCAAAAAAATTGAAAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA
14099155 ATTTTCAAA
65 ATTTTCAAA
14099164 AAAATCAATTTT
1 AAAATCAATTTT
14099176 TGAGGAAAAG
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
73 4 0.05
74 63 0.84
75 8 0.11
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (73 bp):
AAAATCAATTTTCCAAAAAAATTGAAAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
TTTTCAAA
Found at i:14099123 original size:14 final size:14
Alignment explanation
Indices: 14099104--14099132 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14099094 TCAATTTTTG
14099104 GGGAAAAGTTGAAA
1 GGGAAAAGTTGAAA
14099118 GGGAAAAGTTGAAA
1 GGGAAAAGTTGAAA
14099132 G
1 G
14099133 TATCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.38, T:0.14
Consensus pattern (14 bp):
GGGAAAAGTTGAAA
Found at i:14099176 original size:74 final size:74
Alignment explanation
Indices: 14099044--14099192 Score: 289
Period size: 74 Copynumber: 2.0 Consensus size: 74
14099034 AATATTTTTG
*
14099044 GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATCAATTTTTGGGGAA
1 GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATCAATTTTTGAGGAA
14099109 AAGTTGAAA
66 AAGTTGAAA
14099118 GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATCAATTTTTGAGGAA
1 GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATCAATTTTTGAGGAA
14099183 AAGTTGAAA
66 AAGTTGAAA
14099192 G
1 G
14099193 TATCAATTTT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.46, C:0.07, G:0.16, T:0.31
Consensus pattern (74 bp):
GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATCAATTTTTGAGGAA
AAGTTGAAA
Found at i:14099264 original size:60 final size:59
Alignment explanation
Indices: 14099117--14099261 Score: 222
Period size: 60 Copynumber: 2.4 Consensus size: 59
14099107 AAAAGTTGAA
* *
14099117 AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATCAATTTTT
1 AGGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCAAAAAAAT-AATTTTT
*
14099177 -GAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTCAAAAAAA-ATATTTTT
1 AG-GGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCAAAAAAATA-ATTTTT
14099236 AGGGAAAAGTTGAAAGTATCAATTTT
1 AGGGAAAAGTTGAAAGTATCAATTTT
14099262 TCCTGCATAA
Statistics
Matches: 79, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
58 1 0.01
59 31 0.39
60 47 0.59
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.34
Consensus pattern (59 bp):
AGGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCAAAAAAATAATTTTT
Found at i:14100092 original size:26 final size:26
Alignment explanation
Indices: 14100054--14100106 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14100044 GGCTCAAAAT
14100054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14100080 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14100106 C
1 C
14100107 CGAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14100443 original size:159 final size:158
Alignment explanation
Indices: 14100079--14100525 Score: 425
Period size: 159 Copynumber: 2.8 Consensus size: 158
14100069 AACTCCGTAT
* * * *
14100079 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAG
* * ** ** * *
14100144 TCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTTGGTCCCCCCTACATGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGCCGATCC
* * * * *
14100209 TGTTGTCACATCCCTTGGTTCGATTCGA
131 CGCTGCCACAACCCTTGGTTCGACTCGA
* * * * *
14100237 TCTTAGAC-TGGGAATGAACT-CTGTATGCATAAGTCAACCCACGAAACGAGAGTGCGGGCATTG
1 GCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTC
* * *
14100300 AGCCGATCGAAGAGGCATAATACGCAAGCCGGGGAAT-GGCCCGATCCCCCTCTGCGTGCTGCCG
64 AGCCGATCGAAGAGGCAGAATACGCAAGCCGGGG-ATCGGCCCGATCCCCC-CTACATGCTGCCG
* *
14100364 GTCCCGCTGCCACAACCCTTGG-TCTGACTGGA
127 ATCCCGCTGCCACAACCCTTGGTTC-GACTCGA
* * * *
14100396 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGACACTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAG
* * * * * * * * * * * * *
14100461 TCGGTCGGAGAGGCAGAATGCGTATGTCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGCCGATCC
14100526 TACTGTCGCA
Statistics
Matches: 232, Mismatches: 49, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 108 0.47
159 119 0.51
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAG
CCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGCCGATCC
CGCTGCCACAACCCTTGGTTCGACTCGA
Found at i:14100581 original size:158 final size:159
Alignment explanation
Indices: 14100080--14100581 Score: 548
Period size: 158 Copynumber: 3.2 Consensus size: 159
14100070 ACTCCGTATG
* * *
14100080 CTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAGT
* * * *
14100145 CGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTTGGTCCCCCCTACATGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
14100210 GTTGTCACATCCCTTGGTTCGAT-TCGAT
131 GCTGTCACAACCCTTGGTCCGATCTCGAT
* * * * *
14100238 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGAGTGCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAG
* * * * * * * *
14100302 CCGATCGAAGAGGCATAATACGCAAGCCGGGGAAT-GGCCCGATCCCCCTCTGCGTGCTGCCGGT
65 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGG-ATCGGCTCGGTCCCCC-CTGCGTGCTGTCGAT
* * * * *
14100366 CCCGCTGCCACAACCCTTGGTCTGA-CTGGAG
128 CCTGCTGTCACAACCCTTGGTCCGATCTCGAT
* * * * *
14100397 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGACACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAGT
* * * * *
14100462 CGGTCGGAGAGGCAGAATGCGTATGTCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
* * * *
14100527 ACTGTCGCAACCCTCGATCCGATCT-GAT
131 GCTGTCACAACCCTTGGTCCGATCTCGAT
14100555 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14100582 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 60, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 150 0.54
159 123 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCACTCAGT
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGTCACAACCCTTGGTCCGATCTCGAT
Found at i:14100584 original size:26 final size:26
Alignment explanation
Indices: 14100555--14100607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14100545 CCGATCTGAT
14100555 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14100581 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14100607 C
1 C
14100608 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14101834 original size:26 final size:26
Alignment explanation
Indices: 14101805--14101857 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14101795 CTGATCTGAT
*
14101805 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
14101831 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14101857 C
1 C
14101858 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14102538 original size:26 final size:26
Alignment explanation
Indices: 14102502--14102580 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
14102492 CCGATCTGAT
*
14102502 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14102528 CTTAGACTGGGAATGAACTCTATAAG
1 CTTAGACTGGGAATGAACTCCATATG
*
14102554 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14102580 C
1 C
14102581 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14103287 original size:26 final size:26
Alignment explanation
Indices: 14103249--14103301 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14103239 GGCTCAAACT
*
14103249 CTTAGACCAGGAATGAACTCTGTATG
1 CTTAGACCAGGAATGAACGCTGTATG
14103275 CTTAGA-CATGGAATGAACGCTGTATG
1 CTTAGACCA-GGAATGAACGCTGTATG
14103301 C
1 C
14103302 CTAAGCCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACGCTGTATG
Found at i:14103621 original size:26 final size:26
Alignment explanation
Indices: 14103592--14103644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14103582 CTGATCTGAT
*
14103592 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
14103618 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
14103644 C
1 C
14103645 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:14104018 original size:159 final size:158
Alignment explanation
Indices: 14103737--14104311 Score: 532
Period size: 159 Copynumber: 3.6 Consensus size: 158
14103727 ATCGGGCCAA
* * * * * * * * *
14103737 TCCCCCCCTTCGTGCTGCCGGTCCCACTGCCACAATCCTCGGTCCG-GCTGGGA-CTTAGACTTG
1 TCCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGATCT--GATCTTAGACTAG
* * ** *
14103800 GAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAGTCGATCGAAGA
64 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGATCGAAGA
* * * * *
14103865 GGTAGAATGCACAAGTCGGGGATTGGCTCGG
129 GGCATAATGCGCAAG-CGGGGATTGACCCGG
* * *
14103896 TCCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCATAGACTAGGA
1 TCCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGA
* * * * * * * * *
14103961 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCAGGTGCTGAGCCGATCGTAGAAG
66 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGATCGAAGAGG
* * *
14104026 CATAATACGCAAGAGGGGGATTGACCCGA
131 CATAATGCGCAAG-CGGGGATTGACCCGG
* * * * * ** * **
14104055 TCCACCTCTGCGTGCTATCGGTCCTACTACCATAACCCTCGGTCCGAAT-GGGGCTTAGAC-ATG
1 TCCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCG-ATCTGATCTTAGACTA-G
* * * * *
14104118 GAATAAACTCCCTATGCCTAAGCCAAACCACGAAACGGGCGTGCGGGTGCTCAGCCGGTCGGAGA
64 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGATCGAAGA
** *
14104183 GGCATAATGCGCAAGCTAAGGATCGACCCGG
129 GGCATAATGCGCAAGC-GGGGATTGACCCGG
* * *
14104214 T-CCCCCCTACGTGCTG-CTGATCCTACTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGG
1 TCCCCCCCTACGTGCTGTC-GATCCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTAGG
*
14104277 AATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
65 AATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
14104312 AAGCGTGCAG
Statistics
Matches: 325, Mismatches: 83, Indels: 17
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 77 0.24
159 242 0.74
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
TCCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGA
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGATCGAAGAGG
CATAATGCGCAAGCGGGGATTGACCCGG
Found at i:14104813 original size:26 final size:26
Alignment explanation
Indices: 14104784--14104836 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14104774 CCGATCTGAT
14104784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14104810 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14104836 C
1 C
14104837 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14105199 original size:26 final size:27
Alignment explanation
Indices: 14105160--14105214 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
14105150 GTCTGATCTT
14105160 AGACTGGGAGTGAACTTCGTATG-CTA
1 AGACTGGGAGTGAACTTCGTATGCCTA
14105186 AGACTAGGGA-TGAACTTCGTATGCCTA
1 AGACT-GGGAGTGAACTTCGTATGCCTA
14105213 AG
1 AG
14105215 TCAACCCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (27 bp):
AGACTGGGAGTGAACTTCGTATGCCTA
Found at i:14105334 original size:12 final size:12
Alignment explanation
Indices: 14105313--14105343 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14105303 CCTCTCTGCA
14105313 TGCTACCGATCC
1 TGCTACCGATCC
*
14105325 TGCTATCGATCC
1 TGCTACCGATCC
14105337 TGCTACC
1 TGCTACC
14105344 ACAACCTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.16, C:0.39, G:0.16, T:0.29
Consensus pattern (12 bp):
TGCTACCGATCC
Found at i:14105758 original size:26 final size:26
Alignment explanation
Indices: 14105720--14105772 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14105710 CTGGTCTGAT
*
14105720 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
14105746 CTTAGACAT-GGAATAAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCTGTATG
14105772 C
1 C
14105773 CTAAACTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:14106069 original size:159 final size:157
Alignment explanation
Indices: 14105768--14106247 Score: 385
Period size: 159 Copynumber: 3.0 Consensus size: 157
14105758 ATAAACTCTG
* * * * * * * * * * * *
14105768 TATGCCTAAACTAACCCATGAAACGAGCGTACGGACGCTCAGTCGGTCAGAA-AGGTAGAATGCG
1 TATGCCTAAGCGAACCCACGAAACGAGCGTGCGGGCGCTCA-ACCGACCGAAGAGGCAGAAGGTG
** * * * *
14105832 CAAGCCGGGGATCGACCCGATCCCTCCCTATGTGCTGTCGATCCTGCTACCGCAACCCTCAGT-T
65 CAAGCCGGGGATCGACCCGATCCC-CCCTGCGTGCTATCGATCCTACT-CCACAACCCTCGGTCT
* ** *
14105896 CGATCTGATATTAGACTGGGAATGAACTTCG
128 -GGTCTGAGCTTAGACTGGGAATGAACTTCA
* * * * ** * *
14105927 TATGCCTAAGTC-AACCCACGAAACGAGCGTTCGGGTGCTGAGCCGGTCGGAGAGGCATAAGGTG
1 TATGCCTAAG-CGAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAAGGTG
* * * *
14105991 CAAGTCGGGGATCGACTCGATCCCCCTCTGCGTGCTGTCGGTCCTACTACCACAACCCTCGGTCT
65 CAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTATCGATCCTACT-CCACAACCCTCGGTCT
* * * *
14106056 GGT-TGGGGCTTAGACAT-GGCATGAACTCCT
128 GGTCT-GAGCTTAGAC-TGGGAATGAACTTCA
* * * *
14106086 TATGCCTTAGCGAACCCATGAAACGGGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGTGC
1 TATGCCTAAGCGAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAAGGTGC
* * * * * ** *
14106151 AAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTATTGATCCTGCTCCGTAACCTTCGGTCTGGT
66 AAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTCCACAACCCTCGGTCTGGT
*
14106216 CTGATCTTAGACTGGGAATGAACTTCA
131 CTGAGCTTAGACTGGGAATGAACTTCA
14106243 TATGC
1 TATGC
14106248 TTAGACTGGG
Statistics
Matches: 252, Mismatches: 60, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 39 0.15
158 25 0.10
159 184 0.73
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (157 bp):
TATGCCTAAGCGAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAAGGTGC
AAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTCCACAACCCTCGGTCTGGT
CTGAGCTTAGACTGGGAATGAACTTCA
Found at i:14106272 original size:26 final size:26
Alignment explanation
Indices: 14106221--14106273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14106211 CTGGTCTGAT
*
14106221 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14106247 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14106273 C
1 C
14106274 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14107345 original size:158 final size:157
Alignment explanation
Indices: 14106956--14107394 Score: 422
Period size: 158 Copynumber: 2.8 Consensus size: 157
14106946 AACTCCGTAT
** * * *
14106956 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * **
14107021 TCGACCGGAGAGGCAGAATGCGCAAGCCG-GGACCGGCCCGATCCCCC-CTAC-AAGCTGTCAAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GCCCGATCCCCCTCTGCGTA-CTACCAAT
*
14107083 CTGCTGCCACAACCCTCAGTCTGGCCCGA
129 CCGCTGCCACAACCCTCAGTCTGGCCCGA
* * * * * ** *
14107112 TCTTAGGC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* *** * *
14107176 GCTGGTTGGAGAGGCATAATGC-CAAGCCGAGGATCTGCCCGATCCCCCTCTGCGTACTACCAGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GCCCGATCCCCCTCTGCGTACTACCAAT
* ** *
14107240 CCCGCTGCCACAACCCTCGGTCTGGCTGGG
129 -CCGCTGCCACAACCCTCAGTCTGGCCCGA
* * * * * *
14107270 GCTTAGACATGGAATAAACTCCCTATACGTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * *
14107335 CCGACCGGAGAGGTAGAATGCGTAAACCGAGGATCGACCCGAT-CCCCTCTGCGTGCTACC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCG-CCCGATCCCCCTCTGCGTACTACC
14107395 GCAACCCTCA
Statistics
Matches: 221, Mismatches: 54, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
155 8 0.04
156 81 0.37
157 8 0.04
158 106 0.48
159 18 0.08
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGCCCGATCCCCCTCTGCGTACTACCAATCC
GCTGCCACAACCCTCAGTCTGGCCCGA
Found at i:14108175 original size:26 final size:26
Alignment explanation
Indices: 14108137--14108189 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14108127 GGCCCAAACT
14108137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14108163 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14108189 C
1 C
14108190 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14108521 original size:26 final size:26
Alignment explanation
Indices: 14108480--14108532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14108470 CCGATTTGAT
*
14108480 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14108506 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14108532 C
1 C
14108533 GTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14108727 original size:26 final size:26
Alignment explanation
Indices: 14108689--14108741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14108679 CTGGTCTGAT
*
14108689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14108715 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
14108741 C
1 C
14108742 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14109562 original size:26 final size:26
Alignment explanation
Indices: 14109524--14109576 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14109514 CCGGTCTGAT
14109524 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
14109550 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
14109576 C
1 C
14109577 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:14110216 original size:25 final size:26
Alignment explanation
Indices: 14110182--14110233 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14110172 ATGATTCGAT
14110182 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14110207 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14110233 C
1 C
14110234 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14110337 original size:183 final size:184
Alignment explanation
Indices: 14110023--14110430 Score: 518
Period size: 183 Copynumber: 2.2 Consensus size: 184
14110013 TCCGGCTGGG
* * * * * *
14110023 GCTTAGAC-GTGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGTGCTCA
1 GCTTAGACTG-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGAGCGAGCGCTCA
* * * *
14110087 TCGGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCATGCTGCTGATC
65 TCGGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTACATGCTACCGATC
* * * * *
14110152 CTGCTGCCGCAACCTTAGATATGATTCGATCTTAGACT-GGAATGAACTCCATAT
130 CTGCTACCGCAACCCTAGATACGATCCGATCTTAGACTGGGAATAAACTCCATAT
*
14110206 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGAGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGAGCGAGCGCTCA-
* * ** * *
14110271 TC-GGCCGGAGAGGCAGAATGTGTAAGCTGGGGATCGG-CCTGATCCCCCCTACGTGCTACCGAT
65 TCGGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAG-TCCCCCCTACATGCTACCGAT
* * * * *
14110334 CCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAACTCCGTAT
129 CCTGCTACCGCAACCCTAGATACGATCCGATCTTAGACTGGGAATAAACTCCATAT
14110390 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
14110431 CAAAATGAGC
Statistics
Matches: 194, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
182 3 0.02
183 133 0.69
184 58 0.30
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGAGCGAGCGCTCAT
CGGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTACATGCTACCGATCC
TGCTACCGCAACCCTAGATACGATCCGATCTTAGACTGGGAATAAACTCCATAT
Found at i:14110394 original size:26 final size:26
Alignment explanation
Indices: 14110365--14110417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14110355 CCGGTCCGAT
14110365 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
14110391 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14110417 C
1 C
14110418 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Done.