Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 80 of 138
Found at i:14111275 original size:26 final size:26
Alignment explanation
Indices: 14111236--14111286 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14111226 GATCTGATCA
14111236 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
14111262 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
14111287 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:14112005 original size:26 final size:26
Alignment explanation
Indices: 14111955--14112007 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14111945 GGCTCAAACT
*
14111955 CTTAGACTGGAAATGAACTATGTATG
1 CTTAGACTGGAAATGAACTACGTATG
*
14111981 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTACGTATG
14112007 C
1 C
14112008 CTAAGCCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTACGTATG
Found at i:14112334 original size:26 final size:26
Alignment explanation
Indices: 14112298--14112350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14112288 CTGGTTCGAT
*
14112298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14112324 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14112350 C
1 C
14112351 CCCCTGCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14112750 original size:26 final size:26
Alignment explanation
Indices: 14112714--14112766 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14112704 CTGGTTCGAT
*
14112714 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
14112740 CTTAGACTGGGGATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14112766 C
1 C
14112767 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14112948 original size:26 final size:26
Alignment explanation
Indices: 14112910--14112962 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14112900 CCGATCCGAT
*
14112910 CTTAGACTAGGAATCAACTTCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
*
14112936 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATCAACTCCGTATG
14112962 C
1 C
14112963 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:14113228 original size:21 final size:21
Alignment explanation
Indices: 14113198--14113244 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
14113188 GGATCCACTT
*
14113198 GGTCCTCCTCTGCATGCTGCC
1 GGTCCCCCTCTGCATGCTGCC
* *
14113219 GGTCCCCCTCTGCGTGCTGTC
1 GGTCCCCCTCTGCATGCTGCC
14113240 GGTCC
1 GGTCC
14113245 TGCTGTCACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.02, C:0.43, G:0.28, T:0.28
Consensus pattern (21 bp):
GGTCCCCCTCTGCATGCTGCC
Found at i:14113494 original size:26 final size:25
Alignment explanation
Indices: 14113444--14113495 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
14113434 CTAATCTGAT
*
14113444 CTTAGACTAGAATGAACTCTATATG
1 CTTAGACTAGAATGAACTCCATATG
* *
14113469 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGAC-TAGAATGAACTCCATATG
14113495 C
1 C
14113496 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCATATG
Found at i:14113953 original size:26 final size:26
Alignment explanation
Indices: 14113900--14113955 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
14113890 CCGGTCTGAT
*
14113900 CTTAGACTGGGAATGAACTCCATCTG
1 CTTAGACTGGGAATGAACTCCATATG
* * **
14113926 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14113952 CTTA
1 CTTA
14113956 AATCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14115007 original size:26 final size:26
Alignment explanation
Indices: 14114967--14115018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14114957 CAATTTGATA
14114967 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14114993 TTAGACTGTGG-ATGAACTCCGTATGC
1 TTAGACTG-GGAATGAACTCCGTATGC
14115019 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14115213 original size:26 final size:26
Alignment explanation
Indices: 14115162--14115214 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14115152 CCGATTCGAT
**
14115162 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14115188 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14115214 C
1 C
14115215 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14115489 original size:159 final size:158
Alignment explanation
Indices: 14115326--14115690 Score: 349
Period size: 159 Copynumber: 2.3 Consensus size: 158
14115316 CCTATTGCTG
* * *
14115326 CAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTATGAA
1 CAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCAACCCATGAA
* *** * * * * * *
14115391 ATGAGCGTTCGGGTGTTGAGTCAATCGAAGAGGCATAATGCGCAAGCCGGGGATCCGCCCGGTCC
66 ACGAGCGTGAAGGTGCTCAGCCAATCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCC
*** * *** *
14115456 CTTTTTACGTGCTGTTGGTCCCGCTGCCA
131 C-CGCTACATGCTACCGATCCCGCTGCCA
* * ** **
14115485 CAACCCTCAGTTC-GACTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
1 CAACCCTCAGTCCGGTCT-GATCTTAGACTA-GGAATGAACTCTATATGCCTAAGCCAACCCATG
* * * *
14115548 AAACGGGCGTGAAGGTGCTCAGCCAGTCGGAGAGGCAGAATACGCAAGTCGGGGATCAGCCCGGT
64 AAACGAGCGTGAAGGTGCTCAGCCAATCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGT
* *
14115613 CCCCGCTGCATGCTACCGATCCTGCTGCCA
129 CCCCGCTACATGCTACCGATCCCGCTGCCA
* * *
14115643 CAACCCTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCTATATGC
1 CAACCCTCAG-TCCGGTCTGATCTTAGACTAGGAATGAACTCTATATGC
14115691 TTAGACTGGA
Statistics
Matches: 160, Mismatches: 41, Indels: 11
0.75 0.19 0.05
Matches are distributed among these distances:
157 1 0.01
158 55 0.34
159 104 0.65
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (158 bp):
CAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCAACCCATGAA
ACGAGCGTGAAGGTGCTCAGCCAATCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCC
CCGCTACATGCTACCGATCCCGCTGCCA
Found at i:14115705 original size:26 final size:26
Alignment explanation
Indices: 14115664--14115716 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14115654 CCGATCCGAT
14115664 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
14115690 CTTAGACT-GGAGATGAACTCTGTATG
1 CTTAGACTGGGA-ATGAACTCTATATG
14115716 C
1 C
14115717 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:14116746 original size:26 final size:26
Alignment explanation
Indices: 14116707--14116757 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14116697 GGTTTGATCA
14116707 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
14116733 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
14116758 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:14116931 original size:26 final size:26
Alignment explanation
Indices: 14116902--14116954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14116892 CCGGTCCGAT
14116902 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14116928 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14116954 C
1 C
14116955 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14117028 original size:197 final size:197
Alignment explanation
Indices: 14116684--14117065 Score: 475
Period size: 197 Copynumber: 1.9 Consensus size: 197
14116674 CCTGCTGCCA
** *
14116684 CAAGCCTCGATCCGGTTTGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
1 CAAGCCTCGATCCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * * * * * * * *
14116749 TCCGTATGCCTAAGTCAACTCACGAAATGAGCGTGCGGGTGGTCAGAAGGCCGGAGAGGTAGAAT
66 TCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGAAGGCCAGAGAGGCAGAAT
* * *
14116814 ACATAAGCTTGGGATCGG-CTCGATCCCTCCC-TGCGTGCTGCCGATCCTGTTGCTGGTCTTGCT
131 ACATAAGCTCGGGATCGGCCT-GATCCC-CCCATGCATGCTGCCAATCCTGTTGCTGGTCTTGCT
14116877 GCTG
194 GCTG
* * *
14116881 CAAGCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAA
1 CAAGCCTCGATCCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAA
* * **
14116945 CTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCGGCCAGAGAGGCAGAA
65 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGAAGGCCAGAGAGGCAGAA
* * *
14117010 TGCGTAAG-TCGAGGATCGGCCTGATCCCCCCATGCATGCTGTCAATCCTGTTGCTG
130 TACATAAGCTCG-GGATCGGCCTGATCCCCCCATGCATGCTGCCAATCCTGTTGCTG
14117066 CAAGCCTCCC
Statistics
Matches: 156, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
196 5 0.03
197 148 0.95
198 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (197 bp):
CAAGCCTCGATCCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGAAGGCCAGAGAGGCAGAAT
ACATAAGCTCGGGATCGGCCTGATCCCCCCATGCATGCTGCCAATCCTGTTGCTGGTCTTGCTGC
TG
Found at i:14117094 original size:43 final size:44
Alignment explanation
Indices: 14117032--14117116 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 44
14117022 GGATCGGCCT
14117032 GATCCCCCCATGCATGCTGTCAATCCTGTTGCTGCAAGCCTCCC
1 GATCCCCCCATGCATGCTGTCAATCCTGTTGCTGCAAGCCTCCC
14117076 GATCCCCCC-TGCATGCTGTCAATCCTGTTGCTGCAAGCCTC
1 GATCCCCCCATGCATGCTGTCAATCCTGTTGCTGCAAGCCTC
14117117 TATCTGGTCT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 32 0.78
44 9 0.22
ACGTcount: A:0.15, C:0.40, G:0.19, T:0.26
Consensus pattern (44 bp):
GATCCCCCCATGCATGCTGTCAATCCTGTTGCTGCAAGCCTCCC
Found at i:14117476 original size:26 final size:26
Alignment explanation
Indices: 14117447--14117499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14117437 CCGGTTCGAT
14117447 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14117473 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14117499 C
1 C
14117500 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14117971 original size:26 final size:26
Alignment explanation
Indices: 14117933--14117984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14117923 GGCTCAAAAT
14117933 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14117959 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14117985 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14118915 original size:513 final size:500
Alignment explanation
Indices: 14117930--14119040 Score: 1293
Period size: 513 Copynumber: 2.2 Consensus size: 500
14117920 CGTGGCTCAA
*
14117930 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGA-CTAAGCCA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAG-CATCGAATGAACTCCGTAT-ACCTAAGCCA
* * * * *
14117994 ACCCACAAAACGAGCGTGCGGGTGCTCAACCGATCGGAGAGGCAGAATGTGCAAGCTGGGGACCA
64 ACCCACGAAATGAGCGTGCGGGTGCTCAACCGATCGGAAAGGCAGAATGTGCAAGCCGAGGACCA
* * *
14118059 GCCCAATCCTCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTTTCATCTGATCTTAGAC
129 GCCCAATCCTCCCTACGTGCTGTCGAACCTACTACCGTAACCCTCGGTTTCATCTAATCTTAGAC
* * **
14118124 TGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAGCGAGCATGCGGGAGCTGAACCGGTCGG
194 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGAGCTGAACCGACCGG
* * **
14118189 AGAGGCATAATGCACAAGCCGGGGATCGGTCTGATCCCCCTCTGTGTGCTGCCGGTCCTGCTGCC
259 AGAGGCATAATGCACAAGCCGGGGATCAGCCCAATCCCCCTCTGTGTGCTGCCGGTCCTGCTGCC
* * * * *
14118254 ACTACCTTCGGTCCGGCTGGGGCTCAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCACAA
324 ACAACCCTCAGTCCGGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
* * * * * * * * *
14118319 AACGAGTGTACGGGCGGTCAGTCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCAGCTCGGTC
389 AACGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATC
*
14118384 CACCCTGCGTGCTACCGATCCTGTTGCAGGTCCTGCTCATGCAACCCTCGATCCGGTCT
454 CACCCTGCATGCTACCGAT-C--TT--A----CTG-TC--GCAACCCTCGATCCGGTCT
* * * *
14118443 GATGTTAGACTGGGAATGAACTCCGTATGCTTAGCATTGAATGAACTACGTATACCTAAGCCAAC
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGCATCGAATGAACTCCGTATACCTAAGCCAAC
*
14118508 CCATGAAATGAGCGTGCGGGTGCTCAACC-AGTCGGAAAGGCAGAATGTGCAAGCCGAGGACC-G
66 CCACGAAATGAGCGTGCGGGTGCTCAACCGA-TCGGAAAGGCAGAATGTGCAAGCCGAGGACCAG
* * * * *** *
14118571 ACTCGATCC-CCTTCTGCGTGCTGTCGAACTTACTGTTGTAACCCTCGG-TTCGGTCTAATCTTA
130 -CCCAATCCTCC--CTACGTGCTGTCGAACCTACTACCGTAACCCTCGGTTTC-ATCTAATCTTA
* * * ** * **
14118634 GACTGGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTGAGTCGAC
191 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGAGCTGAACCGAC
*
14118699 CGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAATCCCCCTCTGTGTGCTGCCGGT-CTCGC
256 CGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCAATCCCCCTCTGTGTGCTGCCGGTCCT-GC
* *
14118763 TGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
320 TGCCACAACCCTCAGTCCGGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * ** * * *
14118828 ACAAAACGGGCGTGCGGGCGCTCAGCCAGTTGAAGAGGTAGAATGCGTAAGCCAAGGATCGGCCC
385 ACAAAACGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCC
* * *
14118893 GATCC-CCTCTGCATGTTACCGATCTTACTGTCGCAACCCTCGGTCTGGTCT
450 GATCCACC-CTGCATGCTACCGATCTTACTGTCGCAACCCTCGATCCGGTCT
* * * **
14118944 AATCTTAGATTGGGAATGAACTCCGTATGCTTAG-ACCGAGGATGAACTCCGTATGCCTAAGTTA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGCATCGA--ATGAACTCCGTATACCTAAGCCA
* * *
14119008 ACCCACGAAATGAGCATTCGTGTGCTCAACCGA
64 ACCCACGAAATGAGCGTGCGGGTGCTCAACCGA
14119041 CTAGAGAGGC
Statistics
Matches: 509, Mismatches: 78, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
500 3 0.01
501 48 0.09
502 46 0.09
503 3 0.01
504 3 0.01
508 1 0.00
510 2 0.00
511 5 0.01
512 95 0.19
513 303 0.60
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (500 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGCATCGAATGAACTCCGTATACCTAAGCCAAC
CCACGAAATGAGCGTGCGGGTGCTCAACCGATCGGAAAGGCAGAATGTGCAAGCCGAGGACCAGC
CCAATCCTCCCTACGTGCTGTCGAACCTACTACCGTAACCCTCGGTTTCATCTAATCTTAGACTG
GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGAGCTGAACCGACCGGAG
AGGCATAATGCACAAGCCGGGGATCAGCCCAATCCCCCTCTGTGTGCTGCCGGTCCTGCTGCCAC
AACCCTCAGTCCGGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
CGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCA
CCCTGCATGCTACCGATCTTACTGTCGCAACCCTCGATCCGGTCT
Found at i:14119530 original size:26 final size:26
Alignment explanation
Indices: 14119493--14119552 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
14119483 CCTCGGTTCG
14119493 ATCCG-AT-CTTAGACT-GGGAATGAA
1 ATCCGTATGCTTAGACTAGGG-ATGAA
14119517 ATCCGTATGCTTAGACTAGGGATGAA
1 ATCCGTATGCTTAGACTAGGGATGAA
* *
14119543 CTTCGTATGC
1 ATCCGTATGC
14119553 CTGAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 21 0.68
27 3 0.10
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTAGGGATGAA
Found at i:14120494 original size:26 final size:26
Alignment explanation
Indices: 14120458--14120510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14120448 CCGGTCTGAT
14120458 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14120484 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14120510 C
1 C
14120511 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14121721 original size:26 final size:26
Alignment explanation
Indices: 14121681--14121759 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
14121671 CTGGTTCGAT
14121681 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
14121707 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14121733 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14121759 C
1 C
14121760 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 49 0.96
27 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14122173 original size:171 final size:170
Alignment explanation
Indices: 14121732--14122173 Score: 455
Period size: 171 Copynumber: 2.6 Consensus size: 170
14121722 AACTCCGTAT
* * *
14121732 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-ATGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14121795 ACCGACCGGAGAGGC-GTAGTGCACAAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCTGA
65 ACCGACC-GAGAGACAG-AATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGA
* * * *
14121859 TCCCGCTGCTGGTCCTGCTGCCACAACCCTCGGTTCGACTAGG
128 TCCCGCTGCTGGTCCTACTGCCACAACCCTCGATCCGACTAGA
* * *
14121902 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
14121967 CTGGCCGAAAAGACAGAATGCGCAAGCCAGGGATCGGTCCGATCCCACC-CTGCGTGCTGCCGTT
66 CCGACCG-AGAGACAGAATGCGCAAGTCGGGGATCGGCCCGATCCC-CCTCTGCGTGCTGCCGAT
* * * * *
14122031 CCTGCTGCTGGTCCTACTGTCGCAACCCTCGATCCTG-TTTGA
129 CCCGCTGCTGGTCCTACTGCCACAACCCTCGATCC-GACTAGA
* * *
14122073 TCTTAGAC-TGTGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
14122137 ACCGACCAGAGAGCCAGGATGCGTAAGTCGGGGATCG
65 ACCGACC-GAGAGACAGAATGCGCAAGTCGGGGATCG
14122174 AATGGGTGGT
Statistics
Matches: 221, Mismatches: 43, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
170 47 0.21
171 169 0.76
172 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (170 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGACCGAGAGACAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCC
CGCTGCTGGTCCTACTGCCACAACCCTCGATCCGACTAGA
Found at i:14123123 original size:159 final size:158
Alignment explanation
Indices: 14122764--14123227 Score: 366
Period size: 158 Copynumber: 2.9 Consensus size: 158
14122754 AACTTCGTAT
* * * * *
14122764 GCTTAGACATGGAATGAACTTCGTCTGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
14122829 TCGGTCGAAGAGGCAGAATGTGCACACTGAGGATCAGCCCGGTGCCCCCTACGTGCTGTCGATCC
66 CCGGTCGAAGAGGCAGAAAGCGCACACTGAGGATCAGCCCGATGCCCCCTACGTGCTGCCGATCC
* * *
14122894 TATTGCCGCAACCCTCGGTCCAGTCTAA
131 TACTGCCACAACCCTCGGTCCAGGCTAA
* * * ** * * *
14122922 TCTTAGAC-TGGGAATGAACTCCATTTGCATAAGTTAACCCATGAAATGAGCGTATGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * *
14122986 GCCGGTCGAAGAGGCATAAAGCGTACGCCT-AGGATCAGCCCGAT-CCCTCTCTACGTGCTGCCG
65 GCCGGTCGAAGAGGCAGAAAGCGCAC-ACTGAGGATCAGCCCGATGCCC-C-CTACGTGCTGCCG
* * * * *
14123049 GT-CTCACTGCCATAACCTTCTGTCC-GGCTAGG
127 ATCCT-ACTGCCACAACCCTCGGTCCAGGCTA-A
* * * * * *
14123081 GCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * * * * *
14123146 TCGG-CTGGAGAGGCAGAATGCGTA-AGCCGGGGATCAGCCTGGTCCCCCCTGCATGCTGTCGAT
66 CCGGTC-GAAGAGGCAGAAAGCGCACA-CTGAGGATCAGCCCGATGCCCCCTACGTGCTGCCGAT
* *
14123209 CCTGCTGCCGCAACCCTCG
129 CCTACTGCCACAACCCTCG
14123228 ATTCGGTCCA
Statistics
Matches: 234, Mismatches: 60, Indels: 24
0.74 0.19 0.08
Matches are distributed among these distances:
157 4 0.02
158 115 0.49
159 111 0.47
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGGTCGAAGAGGCAGAAAGCGCACACTGAGGATCAGCCCGATGCCCCCTACGTGCTGCCGATCC
TACTGCCACAACCCTCGGTCCAGGCTAA
Found at i:14123281 original size:26 final size:26
Alignment explanation
Indices: 14123242--14123292 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14123232 GGTCCAATCG
*
14123242 TAGACTCGGAATGAACTCTGTATGCT
1 TAGACTCGGAATGAACTCCGTATGCT
* *
14123268 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTCGGAATGAACTCCGTATGC
14123293 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTCGGAATGAACTCCGTATGCT
Found at i:14124156 original size:26 final size:26
Alignment explanation
Indices: 14124120--14124172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14124110 CCGATCTGAT
*
14124120 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14124146 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14124172 C
1 C
14124173 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14124891 original size:26 final size:26
Alignment explanation
Indices: 14124853--14124905 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14124843 AGTTCAAAAT
*
14124853 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14124879 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14124905 C
1 C
14124906 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14126582 original size:29 final size:29
Alignment explanation
Indices: 14126549--14126605 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
14126539 ATCCTACTGC
14126549 CGCAACCCTCGGTCTGATCCAATCTTAGT
1 CGCAACCCTCGGTCTGATCCAATCTTAGT
14126578 CGCAACCCTCGGTCTGATCCAATCTTAG
1 CGCAACCCTCGGTCTGATCCAATCTTAG
14126606 ACTAGGAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.35, G:0.18, T:0.26
Consensus pattern (29 bp):
CGCAACCCTCGGTCTGATCCAATCTTAGT
Found at i:14127585 original size:159 final size:158
Alignment explanation
Indices: 14127294--14127716 Score: 422
Period size: 159 Copynumber: 2.7 Consensus size: 158
14127284 AGCTGGACGG
* ** *
14127294 AGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCC
1 AGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTCCCGATCCCGCTGCC
* ** * * * * * *
14127359 GCAACCCTTGGTTTGATCTAACCTTAGACTGGGAATGAACTCCGTATGCAAAAGTCAACCCATAA
65 ACAACCCTCAGTCTGAGCTAACCTTAGACTGGGAATGAACTCCCTATACAAAAGCCAACCCACAA
* * *
14127424 AACGAGCGTACGGGCGCTGAGCCAGCCGA
130 AACGAGCGTACGGGCACTCAACCAGCCGA
* *
14127453 AGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTCCC-AGTCCCGCTGC
1 AGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTCCCGA-TCCCGCTGC
*** **
14127517 CACAACCCTCAGTCTG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTATACCTAAGCCAACCCA
64 CACAACCCTCAGTCTGAGCT-AACCTTAGAC-TGGGAATGAACTCCCTATACAAAAGCCAACCCA
* * *
14127580 CAAAACGGGCGTGCGGGCACTCAACCGGCCGA
127 CAAAACGAGCGTACGGGCACTCAACCAGCCGA
** * * * * * *
14127612 AGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCG
1 AGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTCCCGATCCCGCTGCCA
* * * *
14127677 CAATCCTCAGTTTG-GTCTGATCTTAGACTGGGAATGAACT
66 CAACCCTCAGTCTGAG-CTAACCTTAGACTGGGAATGAACT
14127717 TCATATGCTT
Statistics
Matches: 217, Mismatches: 40, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 57 0.26
159 158 0.73
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
AGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTCCCGATCCCGCTGCCA
CAACCCTCAGTCTGAGCTAACCTTAGACTGGGAATGAACTCCCTATACAAAAGCCAACCCACAAA
ACGAGCGTACGGGCACTCAACCAGCCGA
Found at i:14127749 original size:26 final size:26
Alignment explanation
Indices: 14127698--14127750 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14127688 TTGGTCTGAT
*
14127698 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14127724 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14127750 C
1 C
14127751 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14128264 original size:158 final size:161
Alignment explanation
Indices: 14127868--14128284 Score: 438
Period size: 158 Copynumber: 2.6 Consensus size: 161
14127858 TGTCGATCCC
* *
14127868 GCTGCCAGTCCTACTACCACAACCCTCAGTCC-AGCTGGGGCTTAGACATGGAATGAACTCTGTA
1 GCTGCCAGTCCTGCTACCACAACCCTCGGTCCGAGCTGGGGCTTAGACATGGAATGAACTCTGTA
* * * *
14127932 TGCCTAAGCAAACCCACGAAACGAGCGTACGGGCGCTTAGCCGGCTAAAGAGACAGAATGCGTAA
66 TG-CTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGGCCAAAGAGACAGAATGCGCAA
14127997 GTCGGGGATCGACCCGGTCCCCCTCACATGCT
130 GTCGGGGATCGACCCGGTCCCCCTCACATGCT
** * * * * * * ** *
14128029 ATTG--A-TCTTGCTACCGCAACCCTTGATCTGATCT-GATCTTAGA-TTGGGAATGAACTCTGT
1 GCTGCCAGTCCTGCTACCACAACCCTCGGTCCGAGCTGGGGCTTAGACAT-GGAATGAACTCTGT
* * * * *
14128089 ATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGTCCGAAGAGGCATAATGCGCA
65 ATGC-TAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGGCCAAAGAGACAGAATGCGCA
*
14128154 AGTCGGGGATCGACCCGGTCCCCCTCA-TTG-T
129 AGTCGGGGATCGACCCGGTCCCCCTCACATGCT
* * * * **
14128185 GCTGCCAGTCCCGCTGCCACAACCCTCGGCCCGA-CTGGGGCTTAGACATGGAATGGACTCCCTA
1 GCTGCCAGTCCTGCTACCACAACCCTCGGTCCGAGCTGGGGCTTAGACATGGAATGAACTCTGTA
* * * * *
14128249 TGCTAAGCCATCCCACGGAACGGGCGTTCTGGCGCT
66 TGCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT
14128285 TAGACTTCAT
Statistics
Matches: 203, Mismatches: 45, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 4 0.02
158 149 0.73
159 44 0.22
160 1 0.00
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (161 bp):
GCTGCCAGTCCTGCTACCACAACCCTCGGTCCGAGCTGGGGCTTAGACATGGAATGAACTCTGTA
TGCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGGCCAAAGAGACAGAATGCGCAAG
TCGGGGATCGACCCGGTCCCCCTCACATGCT
Found at i:14129231 original size:26 final size:26
Alignment explanation
Indices: 14129180--14129232 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14129170 CCGATCCGAT
**
14129180 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14129206 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14129232 C
1 C
14129233 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14129461 original size:159 final size:159
Alignment explanation
Indices: 14129205--14129631 Score: 385
Period size: 159 Copynumber: 2.7 Consensus size: 159
14129195 AACTCTGTAT
* * ** * *
14129205 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGG-AGTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGTGTGCGGGCA-CTCA
** * ** ** * * *
14129269 G-CTGATCAGAGAGGTAGAATATGCAAGCTGGGGATCGGCTCGGTCCCCCCCTGCGTGCTGTCGA
65 GTC-GGCCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGA
** * *
14129333 TCCTGCTACTGCAACCCTCGATCCGGTTCGA
129 TCCTGCTACCACAACCCTAGATCCGGCTCGA
* * * * * *
14129364 TCTTAGAC-TGGGATTGAACTCCGTATGCCAAAGTCAACCCATGAAATGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGTGTGCGGGCACTCA
* * * * ** *
14129428 G-CTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCTCCCTGTGCGTGCTGTCGG
65 GTC-GGCCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGA
* * * * * * *
14129492 TCTTGCTGCCACAACTCTAGGTCTGGCTGGG
129 TCCTGCTACCACAACCCTAGATCCGGCTCGA
* * *
14129523 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
* *
14129588 TCGGCCGGAGAGCCAGAATGCACAAGCCGGGTATCGGCCCGATC
66 TCGGCCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGATC
14129632 GTCCTGTGTG
Statistics
Matches: 213, Mismatches: 51, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 1 0.00
159 209 0.98
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
TCGGCCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATC
CTGCTACCACAACCCTAGATCCGGCTCGA
Found at i:14129716 original size:26 final size:26
Alignment explanation
Indices: 14129676--14129727 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14129666 CGGTCTGACT
14129676 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
14129702 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14129728 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14131100 original size:26 final size:26
Alignment explanation
Indices: 14131062--14131114 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14131052 GGCTCAAAAT
14131062 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14131088 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14131114 C
1 C
14131115 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14131389 original size:159 final size:157
Alignment explanation
Indices: 14131088--14131588 Score: 395
Period size: 159 Copynumber: 3.2 Consensus size: 157
14131078 ACTCCATATG
* * * * * *
14131088 CTTAGACAT-GGAATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGCGCGGGCGCTGAG
* * * ** * * ** * *
14131152 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCACCCCAACATGCTGTC-GAT
65 CCGACCAGAGAGGCA-AATGAACAAGCCGGGGACCGACCCAGTCC-CCCCTACGTGCTG-CAGAT
*** **
14131216 CTTGCTACTGCAACCCTCGGTCCGGTCCGAT
127 CCCACTACCACAACCCTCGGTCCGGTCCGAT
* *
14131247 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGCGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGCGCGGGCGCTGAGC
* ** * * * * *
14131312 TGGTCGGAGAGGCATAAT-AAGCAAGCCGGGGATCGATCCGATTCCCCTCTACGTGCTGCCAG-T
66 CGACCAGAGAGGCA-AATGAA-CAAGCCGGGGACCGA-CCCAGTCCCCCCTACGTGCTG-CAGAT
* * **
14131375 CCCAC-AGCCACAACCCTCGGTCTGG-CTGGGG
127 CCCACTA-CCACAACCCTCGGTCCGGTC-CGAT
* * * ** * * *
14131406 CTTAGACAT-GGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTTAG
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGCGCGGGCGCTGAG
* * *
14131470 CCGACCAGAGAGGCAAATGCACAAGCCGGGGACCGACCCAGTCCCCCCTGCGTGCTGCAGATCCT
65 CCGACCAGAGAGGCAAATGAACAAGCCGGGGACCGACCCAGTCCCCCCTACGTGCTGCAGATCCC
* ** *
14131535 GCTACTGCAACCCTCGGTCCGGTTCGAT
130 ACTACCACAACCCTCGGTCCGGTCCGAT
14131563 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14131589 ATTAGACTGG
Statistics
Matches: 271, Mismatches: 59, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 4 0.01
157 59 0.22
158 21 0.08
159 180 0.66
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGCGCGGGCGCTGAGC
CGACCAGAGAGGCAAATGAACAAGCCGGGGACCGACCCAGTCCCCCCTACGTGCTGCAGATCCCA
CTACCACAACCCTCGGTCCGGTCCGAT
Found at i:14131604 original size:26 final size:26
Alignment explanation
Indices: 14131564--14131614 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14131554 CGGTTCGATC
14131564 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
* *
14131590 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
14131615 CCTGGGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:14132335 original size:26 final size:26
Alignment explanation
Indices: 14132297--14132349 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14132287 GGCTCAAAAT
14132297 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14132323 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14132349 C
1 C
14132350 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14132812 original size:26 final size:26
Alignment explanation
Indices: 14132776--14132828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14132766 CCGGTTCGAT
14132776 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14132802 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14132828 C
1 C
14132829 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14133549 original size:26 final size:26
Alignment explanation
Indices: 14133511--14133563 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14133501 GGCTCAAAAT
14133511 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14133537 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14133563 C
1 C
14133564 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14133837 original size:158 final size:157
Alignment explanation
Indices: 14133675--14134038 Score: 358
Period size: 159 Copynumber: 2.3 Consensus size: 157
14133665 CGTGCTATCG
* * *
14133675 CAACCCTCGGTCCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCCATATGCATAAGCCAACCCACGAAA
* * * * * *
14133740 CAAGCGCGCGGGCGCTGAGCTGGCCGGAGAGGCATAATAAGCAAGCCGGGGATCGATCC-GATCC
66 CAAGCGCGCGGGCGCTGAGCCGACCAGAGAGGCAGAATAAGCAAGCCGGGGACCGACCCAG-TCC
14133804 CCCTCTACGTGCTGCCAG-TCCCAC-AGCCA
130 CCC-CTACGTGCTG-CAGATCCCACTA-CCA
** * ** * * *
14133833 CAACCCTCGGTCTAG-CTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGA
1 CAACCCTCGGTCCGGTC-CGATCTTAGAC-TGGAATGAACTCCATATGCATAAGCCAACCCACGA
** * * * ** *
14133897 AACGGGCGTGCGGGTGCTTAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGACCGACCCAGTC
64 AACAAGCGCGCGGGCGCTGAGCCGACCAGAGAGGCAGAATAAGCAAGCCGGGGACCGACCCAGTC
* ** **
14133962 CCCCCTGCGTGCTGCAGATCCTGCTACTG
129 CCCCCTACGTGCTGCAGATCCCACTACCA
*
14133991 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGC
1 CAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCATATGC
14134039 TTAGACTGGG
Statistics
Matches: 162, Mismatches: 37, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.03
158 71 0.44
159 85 0.52
160 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCCATATGCATAAGCCAACCCACGAAA
CAAGCGCGCGGGCGCTGAGCCGACCAGAGAGGCAGAATAAGCAAGCCGGGGACCGACCCAGTCCC
CCCTACGTGCTGCAGATCCCACTACCA
Found at i:14134048 original size:26 final size:26
Alignment explanation
Indices: 14134012--14134064 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14134002 CCGGTTCGAT
14134012 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14134038 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14134064 C
1 C
14134065 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14135285 original size:24 final size:25
Alignment explanation
Indices: 14135240--14135294 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 25
14135230 CTCGGTCTGG
14135240 TCCG-ATCTTAGACTGGGAATGAAC
1 TCCGTATCTTAGACTGGGAATGAAC
14135264 TCCGTATCTTAGACTGGG-ATGAAC
1 TCCGTATCTTAGACTGGGAATGAAC
*
14135288 TCTGTAT
1 TCCGTAT
14135295 GCCTATGTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (25 bp):
TCCGTATCTTAGACTGGGAATGAAC
Found at i:14135655 original size:26 final size:26
Alignment explanation
Indices: 14135626--14135684 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
14135616 CCGGTTAGAT
14135626 CTTAAGC-TGGGAATGAACTCCGTATG
1 CTTAAGCAT-GGAATGAACTCCGTATG
14135652 CTT-AGACATGGAATGAACTCCGTATG
1 CTTAAG-CATGGAATGAACTCCGTATG
*
14135678 CCTAAGC
1 CTTAAGC
14135685 CAACCCATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
25 2 0.07
26 24 0.83
27 3 0.10
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAAGCATGGAATGAACTCCGTATG
Found at i:14135949 original size:158 final size:157
Alignment explanation
Indices: 14135652--14136459 Score: 420
Period size: 158 Copynumber: 5.2 Consensus size: 157
14135642 ACTCCGTATG
* * * * * * *
14135652 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCGCTCAG
* * ** * * ***
14135716 CCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCC-AGTCCCCCTTGCGTGCTATAGATC
65 CCGACCGAAAAGGCAGAATGCACAAGCTGGGGATCGACCCGA-T-CCCCTTACGTGCTGCCGATC
*
14135780 CTA-TCGCCACAACCCTCGGTCTGGTCCGAT
128 CCACT-GCCACAACCCTCGGTCTGGTCCGAT
* * *
14135810 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCATGCGAGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCGCTCAGC
* * * * *
14135875 TGGCC-AAAGAGGCATAATGCACAAG-TCGGGGATCGACCCGAT-CCCTTCCGCATGCTGCCGGT
66 CGACCGAAA-AGGCAGAATGCACAAGCT-GGGGATCGACCCGATCCCCTTACG--TGCTGCCGAT
* * ** **
14135937 CCCACTGCCACAACCCTTGGTCTGATTGGGG
127 CCCACTGCCACAACCCTCGGTCTGGTCCGAT
* * * * *
14135968 CTTAGACAT-GGAATGAACTCTGTATGCCTAAG-CAAACCAACGAAACGAGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAATGAGCATGCGAGCGCTCA
* ** * * *
14136031 GCCGACCGAAAAGGCCGAATGCGTAAGCTGGTGATCGGCCCGATCCCCCTTACGTGCTGTCGATC
64 GCCGACCGAAAAGGCAGAATGCACAAGCTGGGGATCGACCCGAT-CCCCTTACGTGCTGCCGATC
* ** * * *
14136096 CTACTATCGCAACCCTCAGTCCGG-CCTGAT
128 CCACTGCCACAACCCTCGGTCTGGTCC-GAT
* *
14136126 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCAC--AA--A--AT--GAGCG-T--GC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCGCTCAG-
* * * * ** * * * * * *
14136180 CCGATCGAAGAGGTATAATGTGCAAACCGAGGATCGACCCGATTCCCTTTTACGTGCTGTCGGTC
65 CCGACCGAAAAGGCAGAATGCACAAGCTGGGGATCGACCCGA-TCCC-CTTACGTGCTGCCGATC
* * * * * * **
14136245 CCGCTACCACAACCCTTGGTC-CGACTGGGG
128 CCACTGCCACAACCCTCGGTCTGGTC-CGAT
* * * * * * ** * * *
14136275 CTTAGA-TATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTACGGGCACTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCGCTCAG
* * * * * * *
14136339 CC-AGCCAAAAAGGCAGAATGCATAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCCGTCGATC
65 CCGA-CCGAAAAGGCAGAATGCACAAGCTGGGGATCGACCCGAT-CCCCTTACGTGCTGCCGATC
* * * * * *
14136403 CTATTGCCGCAACCCTCAGTCTGATCTGAT
128 CCACTGCCACAACCCTCGGTCTGGTCCGAT
* *
14136433 CTTAGACTGGAAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14136460 TTAGACTGGG
Statistics
Matches: 477, Mismatches: 136, Indels: 74
0.69 0.20 0.11
Matches are distributed among these distances:
147 1 0.00
148 35 0.07
149 67 0.14
150 4 0.01
151 2 0.00
152 1 0.00
154 1 0.00
155 1 0.00
156 9 0.02
157 8 0.02
158 299 0.63
159 41 0.09
160 8 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCGCTCAGC
CGACCGAAAAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCTTACGTGCTGCCGATCCCA
CTGCCACAACCCTCGGTCTGGTCCGAT
Found at i:14136377 original size:307 final size:308
Alignment explanation
Indices: 14135651--14136452 Score: 950
Period size: 307 Copynumber: 2.6 Consensus size: 308
14135641 AACTCCGTAT
*
14135651 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
14135716 CCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCC-AGTCCCCCTTGCGTGCTATAGATC
66 CCGACCGAAAAGGCAGAATGCGTAAGCTGGGGATCGGCCCGA-TCCCCCTTGCGTGCTGTCGATC
* * * *
14135780 CTATCGCCACAACCCTCGGTCTGGTCC-GATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTC
130 CTAT-GCCGCAACCCTCAGTCTGG-CCTGATCTTAGACTGGGAATGAACTCCACATACCTAAGTC
* * ** *
14135844 AACCCACGAAATGAGCATGCGAGTGCTGAGCTGGCCAAAGAGGCATAATGCACAAGTCGGGGATC
193 AACCCACAAAATGAGCATGC----GCCGA-CT-G-CAAAGAGGCATAATGCACAAACCGAGGATC
* * * *
14135909 GACCCGATCCCTTCCGCATGCTGCCGGTCCCACTGCCACAACCCTTGGTCTGATTGGG
251 GACCCGATCCCTTCCACATGCTGCCGGTCCCACTACCACAACCCTTGGTCCGACTGGG
* * * * *
14135967 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCAAACCAACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * *
14136032 CCGACCGAAAAGGCCGAATGCGTAAGCTGGTGATCGGCCCGATCCCCCTTACGTGCTGTCGATCC
66 CCGACCGAAAAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCC
** * *
14136097 TACTATCGCAACCCTCAGTCCGGCCTGATCTTAGACTGGGAATGAACTCCATATACCTAAGTCAA
131 TA-TGCCGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTCCACATACCTAAGTCAA
* * * **
14136162 CCCACAAAATGAGCGTGC-CCGA-T-CGAAGAGGTATAATGTGCAAACCGAGGATCGACCCGATT
195 CCCACAAAATGAGCATGCGCCGACTGCAAAGAGGCATAATGCACAAACCGAGGATCGACCCGA-T
** * * *
14136224 CCCTTTTACGTGCTGTCGGTCCCGCTACCACAACCCTTGGTCCGACTGGG
259 CCCTTCCACATGCTGCCGGTCCCACTACCACAACCCTTGGTCCGACTGGG
* * * * * * *
14136274 GCTTAGATATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
14136339 CC-AGCCAAAAAGGCAGAATGCATAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCCGTCGATC
66 CCGA-CCGAAAAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATC
** *
14136403 CTATTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTGGAAATGAACTC
130 CTA-TGCCGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTC
14136453 TGTATGCTTA
Statistics
Matches: 415, Mismatches: 66, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
306 31 0.07
307 193 0.47
309 1 0.00
311 3 0.01
315 2 0.00
316 183 0.44
317 2 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (308 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGACCGAAAAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCC
TATGCCGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTCCACATACCTAAGTCAAC
CCACAAAATGAGCATGCGCCGACTGCAAAGAGGCATAATGCACAAACCGAGGATCGACCCGATCC
CTTCCACATGCTGCCGGTCCCACTACCACAACCCTTGGTCCGACTGGG
Found at i:14136462 original size:26 final size:26
Alignment explanation
Indices: 14136433--14136485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14136423 CTGATCTGAT
14136433 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
**
14136459 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
14136485 C
1 C
14136486 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:14137197 original size:26 final size:26
Alignment explanation
Indices: 14137145--14137197 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14137135 GGCTCAAAAT
*
14137145 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
14137171 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGCATG
14137197 C
1 C
14137198 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:14138083 original size:159 final size:158
Alignment explanation
Indices: 14137655--14138155 Score: 409
Period size: 159 Copynumber: 3.2 Consensus size: 158
14137645 CTGATCCGAT
* * * * *
14137655 CTTAGACTGAGAATGAACTCCGTATCCCTAAGGCAACCCACAAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
* * * * * * *
14137720 CGGTCGGAGAGGCAGAATGCGTAAGTTGGGGATCGGCTCGGTCCCCCTCTGCATGCTATCAATCC
66 CGGTCGAAGAGGCAAAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCT-GCAATCC
* * * * * *
14137785 TGCTACCGCAACTCTCGGTCCAGTTCGAT
130 CGCTACCACAACCCTCAGTCCAGCTCGAG
* * ** * * *
14137814 CTTAGACTGGGAATGAACTACGTATTCCTAAGTTAACCCACGAAACGAGCGTGTCGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
** * * * * * * *
14137879 CAACTAGAA-AGGCATAATGCGCAAGTCAGGAAT-TGACCCGATCCCCCTCTGCGTGCTGCAAGT
66 C-GGTCGAAGAGGCAAAATGCGTAAGTCGGGGATCAG-CCCGGTCCCCCTCTGCGTGCTGCAA-T
* * * *
14137942 CCCGCTGCCACAACCCTTAGTCC-GACTGGGG
128 CCCGCTACCACAACCCTCAGTCCAG-CTCGAG
* * * *
14137973 CTTAGACATGGG-ATGAACCCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAG
* *
14138037 CCGGTCGAAGAGGCAAAATGCGTAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATC
65 CCGGTCGAAGAGGCAAAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTG-CAATC
* ** * * *** * * *
14138101 CTGCTGTCGCAACCCTCAATTTGGTTCAAT
129 CCGCTACCACAACCCTCAGTCCAGCTCGAG
14138131 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14138156 GCTTAGACCA
Statistics
Matches: 262, Mismatches: 70, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.02
158 55 0.21
159 195 0.74
160 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
CGGTCGAAGAGGCAAAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCAATCCC
GCTACCACAACCCTCAGTCCAGCTCGAG
Found at i:14139305 original size:26 final size:26
Alignment explanation
Indices: 14139269--14139321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14139259 CCGGGCCGAT
14139269 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* * *
14139295 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14139321 C
1 C
14139322 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14140034 original size:26 final size:26
Alignment explanation
Indices: 14139992--14140044 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14139982 GGCTCAAAAT
*
14139992 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14140018 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14140044 C
1 C
14140045 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14141068 original size:159 final size:157
Alignment explanation
Indices: 14140711--14141140 Score: 429
Period size: 159 Copynumber: 2.7 Consensus size: 157
14140701 AACTCCACAT
* * *
14140711 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATAAAACGAGCGTGCGGGCACT-AA
* * * * ** * * *
14140776 CCGACCAGAGAGGTAAAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATAT
65 CCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCATACTCTCGATAC
** *
14140841 TGCTACCGCAACCCTCGGTCCGGTCGGA
130 CACTACCACAACCCTCGGTCCGGTCGGA
* * *
14140869 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAG-TCAACCCATAAAACGAGCGTACGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCT-AACCCATAAAACGAGCGTGCGGGCACTA
* * *
14140932 ACCTGGCCGGAGAGGCATAATGCGCAAGTCGGGGATTGGCCCGATCCCCTTCTGCATACTACT-G
64 ACC-GGCCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGGTCCCC-CCTGCATACT-CTCG
* * * * *
14140996 GTCCCACTGCCACAACCCTCGGTTCGG-CTGA
126 ATACCACTACCACAACCCTCGGTCCGGTCGGA
* * * *
14141027 GGCTTAGACATTGAATGAACTCCTTATGCCTAAGCTAACCCACAAAACTG-GGGTGCGGGCACTC
1 -GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATAAAAC-GAGCGTGCGGGCACT-
* * * * *
14141091 AGCCGGTCGGAGAGGCAGAATGCGTAATTCGGGGATTGGCCCGGTCCCCC
63 AACCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGGTCCCCC
14141141 TGTGTGCTAC
Statistics
Matches: 222, Mismatches: 40, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.02
158 94 0.42
159 118 0.53
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATAAAACGAGCGTGCGGGCACTAAC
CGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCATACTCTCGATACC
ACTACCACAACCCTCGGTCCGGTCGGA
Found at i:14142386 original size:26 final size:26
Alignment explanation
Indices: 14142350--14142402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14142340 TCGGTCTGAT
14142350 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
14142376 CTTAGACTGGGGATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
14142402 C
1 C
14142403 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14142392 original size:133 final size:133
Alignment explanation
Indices: 14142197--14142463 Score: 331
Period size: 133 Copynumber: 2.0 Consensus size: 133
14142187 CTGCTATCGG
* * *
14142197 AACCCTCGGTCCGGTTTGATCTTAGACTAGGAATGAACTCTGTATGCTTACACATGGAATGAACT
1 AACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAAGCTTACACATGGAATGAACT
* * **
14142262 CCATACA-CCTAAGCCAACCCATGAAACAAGCGTACGGGCACCCAGCCGATCGAAGAGGTAGAAT
66 CCATA-AGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACCCAACCGATCGAAGAGACAGAAT
14142326 GCGC
130 GCGC
* * * *
14142330 AACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGAC-TGGGGATGAAC
1 AACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAAGCTTACACAT-GGAATGAAC
* * ** * * * *
14142394 TCCGTAAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGGTCGGAGAGACAGAAT
65 TCCATAAGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACCCAACCGATCGAAGAGACAGAAT
14142459 GCGC
130 GCGC
14142463 A
1 A
14142464 TGCTAGGGAT
Statistics
Matches: 113, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
132 2 0.02
133 111 0.98
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.19
Consensus pattern (133 bp):
AACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAAGCTTACACATGGAATGAACT
CCATAAGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACCCAACCGATCGAAGAGACAGAATG
CGC
Found at i:14142886 original size:26 final size:26
Alignment explanation
Indices: 14142850--14142902 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14142840 CCGGTCCGAT
14142850 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
14142876 CTTAGATTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14142902 C
1 C
14142903 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14143328 original size:158 final size:158
Alignment explanation
Indices: 14143032--14143329 Score: 368
Period size: 158 Copynumber: 1.9 Consensus size: 158
14143022 TGCCAGTCTT
* * * *
14143032 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
14143097 CCACGAAACAAGCGTGCGGGCTCTCAACCGGTCGGAAAGGCATAATGCACAAGCCGAGGATCGGT
66 CCACAAAACAAGCGTACGGGCTCTCAACCGGTCGGAAAGGCAGAATGCACAAGACGAGGATCGGT
*
14143162 CTGGTCCCCCATTGATGCTACTAGTCCC
131 CTGATCCCCCATTGATGCTACTAGTCCC
*
14143190 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGGCAGGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAAC
* ** * ** * ** *
14143255 CCATAAAACGGGTGTACGGG-TGCTCAGTCGG-CTGGAGAGGCAGAATGTGCAAGACGGGGATCG
66 CCACAAAACAAGCGTACGGGCT-CTCAACCGGTC-GGAAAGGCAGAATGCACAAGACGAGGATCG
14143318 G-CTCGATCCCCC
129 GTCT-GATCCCCC
14143330 CTGCGTGCTG
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 4 0.03
158 113 0.97
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAAC
CCACAAAACAAGCGTACGGGCTCTCAACCGGTCGGAAAGGCAGAATGCACAAGACGAGGATCGGT
CTGATCCCCCATTGATGCTACTAGTCCC
Found at i:14144237 original size:26 final size:26
Alignment explanation
Indices: 14144208--14144260 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14144198 CCAGTCCGAT
14144208 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGCATGAACTCCGTATG
14144234 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGCATGAACTCCGTATG
14144260 C
1 C
14144261 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGCATGAACTCCGTATG
Found at i:14144580 original size:26 final size:26
Alignment explanation
Indices: 14144551--14144603 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14144541 GCAGTCCGAT
14144551 CTTAGAATAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
* * *
14144577 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
14144603 C
1 C
14144604 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:14145201 original size:11 final size:11
Alignment explanation
Indices: 14145181--14145213 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14145171 TGGTTAGGCT
*
14145181 CTCCGGTGATG
1 CTCCGATGATG
14145192 CTCCGATGATG
1 CTCCGATGATG
14145203 CTCCGATGATG
1 CTCCGATGATG
14145214 GTGCCCCAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.27
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:14145335 original size:26 final size:26
Alignment explanation
Indices: 14145283--14145335 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14145273 GGCTTAAAAT
*
14145283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
14145309 CTTAGACAT-GGAATGAACTGCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
14145335 C
1 C
14145336 CTACGAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14145887 original size:159 final size:157
Alignment explanation
Indices: 14145495--14145994 Score: 426
Period size: 157 Copynumber: 3.2 Consensus size: 157
14145485 AACTCCGTGT
* * * **
14145495 GCTTAGACATGGAATGAACTTCGTACGCCTAAGCCAA-CCAGGAAACGAGCGTGCGGTTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
14145559 CCCACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCAGGTCCCCCCTACGTGCTGTCGATCC
66 CCAATC-GAGAGGCAGAATGCGCAAGCCAGGGATCGGCCAGGTCCCCCCTACGTGCTGTCGATCC
* ** * *
14145624 TACTGTCGTAACCCTCAGTCTGGTCCGA
130 TACTGCCACAACCCTCAGTCCGCTCCGA
* * * * * *
14145652 TCTT-GA-TTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * *
14145715 GCCAATCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCTC-GGTCCCCCTCTGCGTGCTGTCGG
65 GCCAATCG-AGAGGCAGAATGCGCAAGCCAGGGATCGGC-CAGGTCCCCC-CTACGTGCTGTCGA
* ** * *
14145779 TCCTGCTGCCACAACCCTTGGTCCGACT-GGG
127 TCCTACTGCCACAACCCTCAGTCCG-CTCCGA
* * * *
14145810 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14145875 CCGATCAGAGAGGTAGAATGCACAAGCC-GAGGATCAGCCCGGT-CCCCCTGCGTGC-GACCGAT
66 CCAATC-GAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCAGGTCCCCCCTACGTGCTG-TCGAT
* * * *
14145937 CCTACTGTCGCAACCCTC-GTTTCGGTCCGA
128 CCTACTGCCACAACCCTCAG-TCCGCTCCGA
*
14145967 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14145995 TTAGACATGG
Statistics
Matches: 270, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
155 1 0.00
156 30 0.11
157 116 0.43
158 41 0.15
159 80 0.30
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAATCGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCAGGTCCCCCCTACGTGCTGTCGATCCT
ACTGCCACAACCCTCAGTCCGCTCCGA
Found at i:14145997 original size:26 final size:26
Alignment explanation
Indices: 14145968--14146020 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14145958 TCGGTCCGAT
14145968 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14145994 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14146020 C
1 C
14146021 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14148092 original size:158 final size:158
Alignment explanation
Indices: 14147644--14148144 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 158
14147634 ATCCCACTAC
* * *
14147644 CAATCCTACTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATTAACTCCGTATGCCTA
1 CAATCCTGCTACCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTA
* * * *
14147709 AGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGAAGAGGCAAAATGCACAAG-TCGG
66 AGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAGAGGCAAAATGCGCAAGCT-GG
*
14147773 GGATCGACCTGGTCCCCC-CTATGTGCTGT
130 GGATCGGCC-GGTCCCCCTCTATGTGCTGT
** * * * ** *
14147802 CAATCCTGCTACCGTAACCCTTGATCCAGTCTGATG-TTAGAC-TGAGAATGAACTCCGTATGCC
1 CAATCCTGCTACCACAACCCTCGAT-CTGACTGGGGCTTAGACATG-GAATAAACTCCGTATGCC
* * * * * * * * * **
14147865 TAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGTCGGTCAGAGAGGCATAATGTGCAAACCA
64 TAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAGAGGCAAAATGCGCAAGCTG
*
14147930 GGGATCGGGCCGGTCCCCCTCTGTGTGCTG-
129 GGGATC-GGCCGGTCCCCCTCTATGTGCTGT
** * *
14147960 CTGGTCCTGCTGCCACAACCC-CGATCTGACTGGGGCTTAGACATGGACA-AAACTCCCTATGCC
1 C-AATCCTGCTACCACAACCCTCGATCTGACTGGGGCTTAGACATGGA-ATAAACTCCGTATGCC
* * * * *
14148023 TAAGCCAACCCATGAAACGGGTGTGCAGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCTG
64 TAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAGAGGCAAAATGCGCAAGCTG
* *
14148088 GGGATAGGCTCGGT-CCCC-CTACT-TGCTGC
129 GGGATCGGC-CGGTCCCCCTCTA-TGTGCTGT
* * *
14148117 CAATCCTGCTACCGCAACACTCGGTCTG
1 CAATCCTGCTACCACAACCCTCGATCTG
14148145 GTCTGATCTT
Statistics
Matches: 268, Mismatches: 62, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 21 0.08
157 23 0.09
158 189 0.71
159 35 0.13
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CAATCCTGCTACCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAGAGGCAAAATGCGCAAGCTGGG
GATCGGCCGGTCCCCCTCTATGTGCTGT
Found at i:14149039 original size:158 final size:158
Alignment explanation
Indices: 14148560--14149061 Score: 410
Period size: 158 Copynumber: 3.2 Consensus size: 158
14148550 ACTCTGCATG
* * * ** *
14148560 CTTAGACAT-GGAATGAACTCTGTATCCCTAAGCCCACCCATGAAACGAGCGTGCGGGATCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCCCTCAG
* * * * * *
14148624 TC-AGTCGAAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCCTGTGTGCTGTCGAT
65 CCGA-TCGGAGAGGCAGAATGAGCAAGTCGAGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGAT
* * * * *
14148688 CCTGATGCTACAACCCTT-GGTCCGTTTCAAT
128 CCTGCTGCCACAA-CCTTCGATCCGATCCAAT
* * * * * * * *
14148719 CGTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTACAGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCCCTCAGC
* * * * * * *
14148784 CGA-CCGAGAGGCATAATGAGCAA-ACCAGGCATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTC
66 CGATCGGAGAGGCAGAATGAGCAAGTCGAGG-ATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATC
* * ****
14148847 CCGCTGCCACAACAC-TC-AGTCTGA-CTGGGG
129 CTGCTGCCACAAC-CTTCGA-TCCGATC-CAAT
* ** *
14148877 CTTAGACAT-GGATTGAACTCCCCATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCCCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCCCTCAG
* * *
14148941 CCGATCGGAGAGGCAGAATGTGCAAGTCGAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGATCGGAGAGGCAGAATGAGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
14149006 TGCTACCGCAACCTTCGATCCGATCCAAT
130 TGCTGCCACAACCTTCGATCCGATCCAAT
* *
14149035 CTTAGACTGGGAGTGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14149062 TTAGACTGGG
Statistics
Matches: 258, Mismatches: 70, Indels: 31
0.72 0.19 0.09
Matches are distributed among these distances:
157 11 0.04
158 158 0.61
159 84 0.33
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCCCTCAGC
CGATCGGAGAGGCAGAATGAGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCTTCGATCCGATCCAAT
Found at i:14150128 original size:159 final size:158
Alignment explanation
Indices: 14149939--14150275 Score: 385
Period size: 159 Copynumber: 2.1 Consensus size: 158
14149929 CCGGTCCGAT
** * * * *
14149939 CTTAGACTGGGAATGAACTCTGTGTGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCACTCAGC
* * * * * *
14150004 CGACCGAAGAGGCATAATGCGCAAG-CAAAGGATTGACTCGGTCCCCCTCTGCGTGCTACTGGT-
66 CGACCGAAGAGGCAGAATGCGCAAGTC-AAGGATTGACCCGATCCCCC-ATGCGTGCTACCGATC
*
14150067 CTCGCTGCCACAACCCTCAGTCCAGCTGGGG
129 CT-GCTACCACAACCCTCAGTCCAGCTGGGG
* * *
14150098 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCACTCAG
* * ** *
14150162 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGATCCCCCATGCGTGCTACCGATCC
65 CCGACCGAAGAGGCAGAATGCGCAAGTCAAGGATTGACCCGATCCCCCATGCGTGCTACCGATCC
* **
14150227 TGCTACCACAACCCTCAGTCCAG-TCCGAT
130 TGCTACCACAACCCTCAGTCCAGCT-GGGG
14150256 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
14150276 TGTATGCTTA
Statistics
Matches: 149, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
157 2 0.01
158 52 0.35
159 93 0.62
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGTCAAGGATTGACCCGATCCCCCATGCGTGCTACCGATCCT
GCTACCACAACCCTCAGTCCAGCTGGGG
Found at i:14150307 original size:26 final size:26
Alignment explanation
Indices: 14150256--14150308 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14150246 CCAGTCCGAT
* **
14150256 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACGGGGAATGAACTCCATATG
*
14150282 CTTAGACGGGGGATGAACTCCATATG
1 CTTAGACGGGGAATGAACTCCATATG
14150308 C
1 C
14150309 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCATATG
Found at i:14150805 original size:26 final size:26
Alignment explanation
Indices: 14150776--14150826 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14150766 CCAGTCCGAT
14150776 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14150802 CTTAGACTGGGGATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
14150827 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14151147 original size:26 final size:26
Alignment explanation
Indices: 14151107--14151157 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14151097 CGATCTGATC
14151107 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
14151133 TTAGATTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14151158 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:14151582 original size:26 final size:26
Alignment explanation
Indices: 14151545--14151595 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14151535 AGTCTGATCT
14151545 TAGACTGGGAATGAACTTCGTATGCA
1 TAGACTGGGAATGAACTTCGTATGCA
*
14151571 TAGACTGTGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
14151596 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCA
Found at i:14151785 original size:159 final size:157
Alignment explanation
Indices: 14151571--14152030 Score: 433
Period size: 158 Copynumber: 2.9 Consensus size: 157
14151561 TTCGTATGCA
* * *
14151571 TAGACTGTGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAGCCG
1 TAGACTG-GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCA
* *
14151636 GTCGGAGAGGTAGAAA-GCACAAGCCGAGGACC-AGCCCGATCCCCTCCTACGTGCTGTCGATCC
65 ATCGGAGAGGCA-AAATGCACAAGCCGAGGACCGA-CCCGATCCCC-CCTACGTGCTGTCGATCC
** *
14151699 TGTTGCCGCAACCCTC-AGTCCGATCCGATCT
127 TACTGCCGCAACCCTCGA-TCCGATCCAATCT
* * * *
14151730 TAGACTAGGAATGAACTTCGTAAGCCTAAGTCAACCCAAGAAACGAGCGTTCGAGCGCTGAGCCA
1 TAGACT-GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCA
* * * * * **
14151795 ATCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGATTCCCCCTGTGTGCTGTCGATCCTAC
65 ATCGGAGAGGCAAAATGCACAAGCCGAGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTAC
* * *
14151860 TGCCGTAACCCTCGATCCGGTCTAATCT
130 TGCCGCAACCCTCGATCCGATCCAATCT
* * * * * * * *
14151888 TAGACTTGGAATGAACTTCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAACCG
1 TAGAC-TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCA
* * * * * ** * * * *
14151953 ACCGAAAAGGCATAATGCGCAAGCCGAGGATTGGCCCGGT-CCCCCTATGCGTGCTGTCGGTCCC
65 ATCGGAGAGGCAAAATGCACAAGCCGAGGACCGACCCGATCCCCCCTA--CGTGCTGTCGATCCT
*
14152017 ACTGCCACAACCCT
128 ACTGCCGCAACCCT
14152031 TAGTCTGCCT
Statistics
Matches: 247, Mismatches: 47, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 6 0.02
158 126 0.51
159 113 0.46
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
TAGACTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCAA
TCGGAGAGGCAAAATGCACAAGCCGAGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTACT
GCCGCAACCCTCGATCCGATCCAATCT
Found at i:14151918 original size:158 final size:159
Alignment explanation
Indices: 14151571--14151940 Score: 435
Period size: 158 Copynumber: 2.3 Consensus size: 159
14151561 TTCGTATGCA
* *
14151571 TAGAC-TGTGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAGCC
1 TAGACTTG-GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
** *
14151635 GGTCGGAGAGGTAGAAAGCACAAGCCGAGGACCAGCCCGATCCCCTCCTACGTGCTGTCGATCCT
65 AATCGGAGAGGCAGAAAGCACAAGCCGAGGACCAGCCCGATCCCCTCCTACGTGCTGTCGATCCT
** *
14151700 GTTGCCGCAACCCTCAGTCCGATCCGATCT
130 ACTGCCGCAACCCTCAGTCCGATCCAATCT
* * * * *
14151730 TAGACTAGGAATGAACTTCGTAAGCCTAAGTCAACCCAAGAAACGAGCGTTCGAGCGCTGAGCCA
1 TAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCA
* * * * * **
14151795 ATCGGAGAGGCA-AAATGCGCAAGCTGGGGATC-GACCCGATTCCC-CCTGTGTGCTGTCGATCC
66 ATCGGAGAGGCAGAAA-GCACAAGCCGAGGACCAG-CCCGATCCCCTCCTACGTGCTGTCGATCC
* * *
14151857 TACTGCCGTAACCCTC-GATCCGGTCTAATCT
129 TACTGCCGCAACCCTCAG-TCCGATCCAATCT
* * *
14151888 TAGACTTGGAATGAACTTCATATGCATAAGTCAACCCACGAAATGAGCGTGCG
1 TAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
14151941 GGCGTTGAAC
Statistics
Matches: 177, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.01
158 89 0.50
159 86 0.49
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.19
Consensus pattern (159 bp):
TAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCA
ATCGGAGAGGCAGAAAGCACAAGCCGAGGACCAGCCCGATCCCCTCCTACGTGCTGTCGATCCTA
CTGCCGCAACCCTCAGTCCGATCCAATCT
Found at i:14152071 original size:159 final size:159
Alignment explanation
Indices: 14151886--14152224 Score: 383
Period size: 159 Copynumber: 2.1 Consensus size: 159
14151876 CCGGTCTAAT
* * * * * * **
14151886 CTTAGACTTGGAATGAACTTCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAAC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTGAAC
* ** * * * *
14151951 CGACCGAAAAGGCATAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCTATGCGTGCTGTCGGTCC
66 CGACCGAAAAGGCATAATGCGCAAACCGAGGACCGGCCCGATCCCCCTATGCATGCTGCCAGTCC
*
14152016 CACTGCCACAACCCTTAG-TCTGCCTGAGG
131 CACTGCCACAACCC-TAGACCTGCCTGAGG
* * * * *
14152045 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTACTGATC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTGAAC
* * * * * *
14152110 CGGCCGAAGAGGCATAATGTGTAAACCGGGGACCGGCTCGATCCCCCTATGCATGCTGCCAGTCC
66 CGACCGAAAAGGCATAATGCGCAAACCGAGGACCGGCCCGATCCCCCTATGCATGCTGCCAGTCC
* * *
14152175 CACTGCCACAACCCTCGACCTGGCTGGGG
131 CACTGCCACAACCCTAGACCTGCCTGAGG
*
14152204 CTTAGACATGGAATAAACTCC
1 CTTAGACATGGAATGAACTCC
14152225 GCATGCCTAA
Statistics
Matches: 148, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
158 2 0.01
159 146 0.99
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTGAAC
CGACCGAAAAGGCATAATGCGCAAACCGAGGACCGGCCCGATCCCCCTATGCATGCTGCCAGTCC
CACTGCCACAACCCTAGACCTGCCTGAGG
Found at i:14152313 original size:159 final size:158
Alignment explanation
Indices: 14151886--14152315 Score: 362
Period size: 159 Copynumber: 2.7 Consensus size: 158
14151876 CCGGTCTAAT
* * * * * * * * * * *** *
14151886 CTTAGACTTGGAATGAACTTCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAAC
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACAGAGC
* * * * * * * * *
14151951 CGACCGAAAAGGCATAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCTATGCGTGCTGTCGGTCC
66 CGGCCGAAGAGGCACAATGCGTAAGCCGA-GATCGGCCCGATCCCCCTATGCATGCTGCCAGTCC
* *
14152016 CACTGCCACAACCCTTAGTCTGCCTGAGG
130 CACTGCCACAACCCTGAGCCTGCCTGAGG
* * * * * *
14152045 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTACTGATC
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACAGAGC
* * * * * *
14152110 CGGCCGAAGAGGCATAATGTGTAAACCGGGGACCGGCTCGATCCCCCTATGCATGCTGCCAGTCC
66 CGGCCGAAGAGGCACAATGCGTAAGCC-GAGATCGGCCCGATCCCCCTATGCATGCTGCCAGTCC
* *
14152175 CACTGCCACAACCCTCGA-CCTGGCTGGGG
130 CACTGCCACAACCCT-GAGCCTGCCTGAGG
** ** * *
14152204 CTTAGACATGGAATAAACTCCGC-ATGCCTAAGCTGACCCATGAAACGAGTGTGCAGGCA-AGAG
1 CTTAGACATGGAATAAACTCC-CTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACAGA-
* *
14152267 GCCGGCCGAAGAGTCACAATGCGTAAGCCAGAGATCGGCCCAATCCCCC
64 GCCGGCCGAAGAGGCACAATGCGTAAGCC-GAGATCGGCCCGATCCCCC
14152316 CTGCATACTG
Statistics
Matches: 216, Mismatches: 51, Indels: 8
0.79 0.19 0.03
Matches are distributed among these distances:
158 2 0.01
159 211 0.98
160 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.17
Consensus pattern (158 bp):
CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACAGAGC
CGGCCGAAGAGGCACAATGCGTAAGCCGAGATCGGCCCGATCCCCCTATGCATGCTGCCAGTCCC
ACTGCCACAACCCTGAGCCTGCCTGAGG
Found at i:14153955 original size:26 final size:26
Alignment explanation
Indices: 14153919--14153968 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14153909 CTGGTTTGAT
*
14153919 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
14153945 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14153969 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:14154570 original size:11 final size:11
Alignment explanation
Indices: 14154554--14154586 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14154544 TGGTTAGGCT
14154554 CTCCGACGATG
1 CTCCGACGATG
14154565 CTCCGACGATG
1 CTCCGACGATG
*
14154576 CTCCGATGATG
1 CTCCGACGATG
14154587 GTGCCCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14154707 original size:26 final size:26
Alignment explanation
Indices: 14154656--14154708 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14154646 GGCTCAAAAT
*
14154656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14154682 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14154708 C
1 C
14154709 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14154986 original size:159 final size:157
Alignment explanation
Indices: 14154682--14155184 Score: 409
Period size: 159 Copynumber: 3.2 Consensus size: 157
14154672 ACTCCGTATG
* * * * * * * * *
14154682 CTTAGACATGGAATGAACTTCATATGCCTAGGCCAACCCACGAAACGAGCATGCGGGCGCTTAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTCCGGGCACTCAGC
* * * * * * * * * *
14154747 CGGTCAGAA-AGGCAGAACGCGTAAGCCAGGGATC-GACCCAGTCTCACACTGTGTGCTGTCGAT
65 CAG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGGTC-CCCCCTGCGTGCTGCCGAT
* ** *
14154810 CCTACTACTGCAACCCTCAATCCGGTCTGAT
127 CCCACTACCACAACCCTCAGTCCGGTCTGAT
** * * * *
14154841 CTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACCTATGAAACGAGCGTCCGGGCATTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTCCGGGCACTCAGC
** * ** * * *
14154906 TGGCCGAAGAGGCATAATGCGCAAGTTGGGGATCAGCCCGGTCCCCTTCTGCGTGCTGTCGGTCC
65 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCC-CCTGCGTGCTGCCGATCC
* **
14154971 CACTGCCACAACCCTCAGTCCGG-CTGGGG
129 CACTACCACAACCCTCAGTCCGGTCT-GAT
* * * * * **
14155000 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTCCGGGCACTCAGC
* * * * *
14155065 CAGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCT
65 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCC
* * *
14155130 GCTACCCCAACCCTCAGTCCGATCTGAT
130 ACTACCACAACCCTCAGTCCGGTCTGAT
14155158 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
14155185 TTAGATTGGG
Statistics
Matches: 269, Mismatches: 67, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 67 0.25
159 199 0.74
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTCCGGGCACTCAGCC
AGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCCA
CTACCACAACCCTCAGTCCGGTCTGAT
Found at i:14155187 original size:26 final size:26
Alignment explanation
Indices: 14155158--14155210 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14155148 CCGATCTGAT
14155158 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
14155184 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14155210 C
1 C
14155211 CTATGTAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14155635 original size:159 final size:158
Alignment explanation
Indices: 14155340--14155638 Score: 375
Period size: 159 Copynumber: 1.9 Consensus size: 158
14155330 GTCGGTCCTA
* * ** * *
14155340 CTGCGACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTGTGCCTAAGTCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
14155405 CACGAAACGAGCCTGCGGGCGCTGAGCCGACCAAAGAGGCATAATGCGCAAGCAAAGGATTGACT
66 CACGAAACGAGCCTGCGGGCGCTCAGCCGACCAAAGAGGAAGAATGCGCAAGC-AAGGATCGACC
*
14155470 CGGTCCCCCTCTGCGTGCTGCTGGTTTCG
130 CAGTCCCCCTCTGCGTGCTGCTGGTTTCG
*
14155499 CTGCCACAACCCTCGGTCCGGCTGGGGATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * *
14155564 CACGAAACGGGCGTGCGGGCGCTCAGTCGATCGAAGAGGAAGAATGCGTAAGTC-GGGCATCGGC
66 CACGAAACGAGCCTGCGGGCGCTCAGCCGACCAAAGAGGAAGAATGCGCAAG-CAAGG-ATCGAC
14155628 CCAGTCCCCCT
129 CCAGTCCCCCT
14155639 TACATGCTAC
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 2 0.02
159 114 0.97
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.17
Consensus pattern (158 bp):
CTGCCACAACCCTCGGTCCGACTGGGGATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCCTGCGGGCGCTCAGCCGACCAAAGAGGAAGAATGCGCAAGCAAGGATCGACCC
AGTCCCCCTCTGCGTGCTGCTGGTTTCG
Found at i:14155878 original size:26 final size:26
Alignment explanation
Indices: 14155840--14155892 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14155830 GGCTCAAACT
14155840 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14155866 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14155892 C
1 C
14155893 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14156560 original size:26 final size:26
Alignment explanation
Indices: 14156531--14156583 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14156521 CCGGTCCGAT
*
14156531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
14156557 CTTAGGCTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14156583 C
1 C
14156584 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14156935 original size:26 final size:26
Alignment explanation
Indices: 14156898--14156948 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14156888 CCAGTTCGAT
*
14156898 CTTAGACTTGGAATGAACTCCGTATC
1 CTTAGACATGGAATGAACTCCGTATC
*
14156924 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
14156949 GGCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:14161813 original size:26 final size:26
Alignment explanation
Indices: 14161777--14161829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14161767 TCGGTCTGAT
14161777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14161803 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14161829 C
1 C
14161830 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14162185 original size:26 final size:26
Alignment explanation
Indices: 14162156--14162208 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14162146 CCGATCTGAT
14162156 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14162182 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14162208 C
1 C
14162209 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14162467 original size:158 final size:158
Alignment explanation
Indices: 14162182--14162474 Score: 338
Period size: 158 Copynumber: 1.9 Consensus size: 158
14162172 ACTCCGTATG
* * * **
14162182 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGAGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAATAAGCACACGAGTGCTCAAC
* * * ** * ** *
14162247 CGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCAACCTAGTCCCCCCTGTGTGTTGTCGATCTT
66 CGACCAGAGAGGCAGAATGCACAAGTCGAGGATCAACCGAGTCCCCCCTACGTGCTACCGATCCT
14162312 GCTACCACAACCCTCAGTTCGATCTGAT
131 GCTACCACAACCCTCAGTTCGATCTGAT
* * * * *
14162340 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACCAAATAAGCGCACGGGTGCTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACCAAATAAGCACACGAGTGCTCAA
* * ** *
14162404 CCGACTAGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGA-TCCCCCCTACGTGCTACCGATC
65 CCGACCAGAGAGGCAGAATGCACAAGTCGAGGATCA-ACCGAGTCCCCCCTACGTGCTACCGATC
14162468 CTGCTAC
129 CTGCTAC
14162475 TGGTTCTACT
Statistics
Matches: 109, Mismatches: 24, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
157 1 0.01
158 105 0.96
159 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAATAAGCACACGAGTGCTCAAC
CGACCAGAGAGGCAGAATGCACAAGTCGAGGATCAACCGAGTCCCCCCTACGTGCTACCGATCCT
GCTACCACAACCCTCAGTTCGATCTGAT
Found at i:14162469 original size:354 final size:355
Alignment explanation
Indices: 14162092--14162740 Score: 842
Period size: 354 Copynumber: 1.8 Consensus size: 355
14162082 ATCGGCTTGG
* * * * * * **
14162092 TCCCCCCTACGTACTATCGATCCTGTTGCTGG-TCTTACTATCGCAACCCTCAGTCCGATCTGAT
1 TCCCCCCTACGTACTACCGATCCTGCTACTGGTTC-TACTACCACAACCATCAGTCCGATCCAAT
* * * *
14162156 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
65 CTTAAACTGGGAATGAACTCCGAATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCA
* * *
14162221 ACGAAATGAGCATACGAGTGCTCAG-TCGGCCGGAGAGGCAGAATGCACAAG-TCGAGGATCAAC
130 ACGAAATAAGCATACGAGAGCTCAGCT-GGCCGGAGAGGCAGAATGCACAAGCT-GAGGACCAAC
* * * *
14162284 CTAGTCCCCC-CTGT-GTGTTGTCGATCTTGCTACCACAACCCTCAGTTC-GATCTGATCTTAGA
193 CTAGTCCCCCACT-TCGTGCTGTCGATCATACTACCACAACCCTCAGTTCAG-TCTAATCTTAGA
* *
14162346 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACCAAATAAGCGCACGGGTGCTGAACCGACTA
256 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACCAAATAAGCGCACGGGTGCTGAACCGACTA
14162411 GAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGA
321 GAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGA
* * *
14162446 TCCCCCCTACGTGCTACCGATCCTGCTACTGGTTCTACTACCACAACCATTAGTCCGGTCCAATC
1 TCCCCCCTACGTACTACCGATCCTGCTACTGGTTCTACTACCACAACCATCAGTCCGATCCAATC
* * *
14162511 TTAAACTGGGAATGAACTCTGAATGCTTAGACATAGAATGAACTCCGTATGCTTAAGCTAACCAA
66 TTAAACTGGGAATGAACTCCGAATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCAA
** * * * * ** * *
14162576 CGAAATAAGTGTGCGGGAGCTCAGCTGGCCGGAGAGGTAGAATGCACAAGCTGGGGACCGTCTTG
131 CGAAATAAGCATACGAGAGCTCAGCTGGCCGGAGAGGCAGAATGCACAAGCTGAGGACCAACCTA
*
14162641 GTCCCCCACTTCGTGCTGTCGATCATACTACCACAACCCTCATTTCAGTCTAATCTTAGACTGGG
196 GTCCCCCACTTCGTGCTGTCGATCATACTACCACAACCCTCAGTTCAGTCTAATCTTAGACTGGG
* * *
14162706 AATGAACTCCATATGCTTAAGTCAAGCCACGAAAT
261 AATGAACTCCATATGCCTAAGTCAACCCACCAAAT
14162741 GAGTGTTCGG
Statistics
Matches: 248, Mismatches: 41, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
354 165 0.67
355 82 0.33
356 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (355 bp):
TCCCCCCTACGTACTACCGATCCTGCTACTGGTTCTACTACCACAACCATCAGTCCGATCCAATC
TTAAACTGGGAATGAACTCCGAATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCAA
CGAAATAAGCATACGAGAGCTCAGCTGGCCGGAGAGGCAGAATGCACAAGCTGAGGACCAACCTA
GTCCCCCACTTCGTGCTGTCGATCATACTACCACAACCCTCAGTTCAGTCTAATCTTAGACTGGG
AATGAACTCCATATGCCTAAGTCAACCCACCAAATAAGCGCACGGGTGCTGAACCGACTAGAGAG
GCATAATGCGTAAGTCGAGGATCAGCCCGA
Found at i:14163047 original size:26 final size:26
Alignment explanation
Indices: 14163011--14163063 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14163001 CCGGTTCGAT
14163011 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14163037 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14163063 C
1 C
14163064 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14163621 original size:197 final size:196
Alignment explanation
Indices: 14163221--14163641 Score: 524
Period size: 197 Copynumber: 2.1 Consensus size: 196
14163211 TCCGACTGGG
* * * *
14163221 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACCGTGCGAGCACTCAG
* * * *
14163286 CTGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATAGGCCTAGTACCCCCTGCGTGCTGCCAATCC
66 CTAGCCAGAGAGGCAGAATGCGCAAGTCAGGGATAGACCCAGTACCCCCTACGTGCTGCCAATCC
* * *
14163351 TACTGCCGGTCCTGCTACCGCAACCCTCGATACGATCCGATCTTTGACTGGGAACGAACTCCATA
131 TACTGCCGGTCCTACTACCGCAACCCTCGATACGATCCAATCTTAGACTGGGAACGAACTCCATA
14163416 T
196 T
* * *
14163417 GCTTAGACAAGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGACCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACCGTGCGAGCACTCAG
* * * * * * * *
14163482 -TCAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGT-CCCTTCCTACGTGCTGTCGA
66 CT-AGCCAGAGAGGCAGAATGCGCAAGTCAGGGATAGACCCAGTACCC--CCTACGTGCTGCCAA
* * * * *
14163545 TCCTGCTGCTGGTCCTACTACTGCAACCCTCGAT-CTGGTCCAATCTTAGACTGGGAATGAACTC
128 TCCTACTGCCGGTCCTACTACCGCAACCCTCGATAC-GATCCAATCTTAGACTGGGAACGAACTC
*
14163609 CTTAT
192 CATAT
*
14163614 GCTTAGACATGGAATGAACTCCTTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
14163642 TTAGACATGG
Statistics
Matches: 189, Mismatches: 32, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
195 4 0.02
196 91 0.48
197 94 0.50
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACCGTGCGAGCACTCAG
CTAGCCAGAGAGGCAGAATGCGCAAGTCAGGGATAGACCCAGTACCCCCTACGTGCTGCCAATCC
TACTGCCGGTCCTACTACCGCAACCCTCGATACGATCCAATCTTAGACTGGGAACGAACTCCATA
T
Found at i:14163667 original size:26 final size:26
Alignment explanation
Indices: 14163589--14163659 Score: 126
Period size: 26 Copynumber: 2.7 Consensus size: 26
14163579 CTGGTCCAAT
14163589 CTTAGAC-TGGGAATGAACTCCTTATG
1 CTTAGACAT-GGAATGAACTCCTTATG
14163615 CTTAGACATGGAATGAACTCCTTATG
1 CTTAGACATGGAATGAACTCCTTATG
14163641 CTTAGACATGGAATGAACT
1 CTTAGACATGGAATGAACT
14163660 TCGTATGCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCTTATG
Found at i:14165073 original size:26 final size:26
Alignment explanation
Indices: 14165022--14165074 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14165012 CTGATCTGAT
* *
14165022 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGATTGGGAATGAACTCTATATG
*
14165048 CTTAGATTGGGGATGAACTCTATATG
1 CTTAGATTGGGAATGAACTCTATATG
14165074 C
1 C
14165075 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.36
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTATATG
Found at i:14165412 original size:25 final size:26
Alignment explanation
Indices: 14165364--14165415 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
14165354 CCGATCTGAT
*
14165364 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCTGTATG
*
14165390 CTTAGATTGGG-AGGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCTGTATG
14165415 C
1 C
14165416 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCTGTATG
Found at i:14165735 original size:353 final size:340
Alignment explanation
Indices: 14164863--14165743 Score: 914
Period size: 353 Copynumber: 2.5 Consensus size: 340
14164853 AACTCCGTAT
* *
14164863 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * *
14164928 -CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-CAGTCCCCCCTACGTG-T-TGCTG
66 TCCA-CCGGAGAGGCAGAATGCGCAAGCC-GGGA-CGACCTGA-T-CCCCCTTCGTGCTAT-CTG
* * *
14164989 ATCCTATTATCGTAACCCTCGGTCTGATCTGATCTTAGATTGGGAATGAACTTTGTATGCTTAGA
125 ATCCTACTATCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC-TTGTATGCTTAGA
*
14165054 TTGGGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCA
189 TTGGGGAGGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCA
* *
14165119 GACAGGTAGAATGCGAAAGTTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGG
254 GACAGGTAGAATGCGAAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCCACTGG
*
14165184 CACAACCCTCGATCTGGTTGGG
319 CACAACCCTCGATCTGGTTGGA
* * * * *
14165206 GCTTATACATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAA-CAGGCATGAGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGA-GCATGCGGGCGCTCA
** * * *
14165270 GTCGGCCGGAGAGGCAAAATGCGCATGCCAGGGACCGACCTGGTCCCCCTAT-GTGCTA-CTGAT
65 GTCCACCGGAGAGGCAGAATGCGCAAGCC-GGGA-CGACCTGATCCCCCT-TCGTGCTATCTGAT
* *
14165333 CCTACTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATT
127 CCTACTATCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACT-TGTATGCTTAGATT
* * **
14165398 -GGGAGGAACTCTGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCGCTCAGCTGGCTGGA
191 GGGGAGGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGA
* * *
14165462 CAGGTAGAATGC-ACAAGTCGGGGATC-GACCTGATCCCACC-CTGTGTGCTATCGATCCTGCTA
256 CAGGTAGAATGCGA-AAGTCGGGGATCAG-CCCGATCCC-CCTCTGCGTGCTACCGATCC--C-A
14165524 CTGGTCCTACTACCGTAACCCTC-AGTCTGGTCT-GA
315 CTGG-----C-A-C--AACCCTCGA-TCTGGT-TGGA
* * * * * *
14165559 TCTTAGGC-TGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCTTGCGGGTGCTTA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
* * *
14165623 GTCTACCGAAGAGGCAGAATGCGCAAGCC-GGACAGGCCTGATCACCCCTTGCGTGCTATC-GAT
65 GTCCACCGGAGAGGCAGAATGCGCAAGCCGGGAC-GACCTGATC-CCCCTT-CGTGCTATCTGAT
* * * * * *
14165686 CCTGCTA-CTGCAACCCTCGGTCCGGTCCGCTCTTACACTGGGAATGAACTTCGTATGC
127 CCTACTATC-GTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTT-GTATGC
14165744 CTAAGTCAGC
Statistics
Matches: 446, Mismatches: 59, Indels: 56
0.80 0.11 0.10
Matches are distributed among these distances:
340 2 0.00
341 105 0.24
342 75 0.17
343 89 0.20
344 6 0.01
349 1 0.00
350 2 0.00
351 12 0.03
352 9 0.02
353 142 0.32
354 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (340 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
TCCACCGGAGAGGCAGAATGCGCAAGCCGGGACGACCTGATCCCCCTTCGTGCTATCTGATCCTA
CTATCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTGTATGCTTAGATTGGGGA
GGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGACAGGT
AGAATGCGAAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCCACTGGCACAACC
CTCGATCTGGTTGGA
Found at i:14166850 original size:26 final size:26
Alignment explanation
Indices: 14166812--14166862 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14166802 GGCTTAAACA
14166812 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14166838 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCTGTAT
14166863 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14166931 original size:26 final size:26
Alignment explanation
Indices: 14166902--14166979 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
14166892 GGGCGCTCAA
* *
14166902 CCGACCAGAGAGGTAAAATGCGCAAG
1 CCGACCAGAGAGGCAAAATGCACAAG
*
14166928 CCGACCAGAGAGGCAGAATGCACAAG
1 CCGACCAGAGAGGCAAAATGCACAAG
*
14166954 CCGACCAGAGAGGCAGAATGCCACAA
1 CCGACCAGAGAGGCAAAATG-CACAA
14166980 CCCTCGATCC
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 43 0.90
27 5 0.10
ACGTcount: A:0.38, C:0.27, G:0.29, T:0.05
Consensus pattern (26 bp):
CCGACCAGAGAGGCAAAATGCACAAG
Found at i:14167242 original size:26 final size:26
Alignment explanation
Indices: 14167204--14167256 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14167194 CCAATTCGAT
14167204 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14167230 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14167256 C
1 C
14167257 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14168412 original size:26 final size:26
Alignment explanation
Indices: 14168371--14168423 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14168361 CCAATCTGAT
*
14168371 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14168397 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
14168423 C
1 C
14168424 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14169074 original size:26 final size:26
Alignment explanation
Indices: 14169028--14169082 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
14169018 CTCTGCGTGC
* *
14169028 TGCTTAGACTGGGAATGAACTTCGTA
1 TGCTTAGACTGGGAATAAACTCCGTA
14169054 TGCTTAGACTAGGG-ATAAACTCCGTA
1 TGCTTAGACT-GGGAATAAACTCCGTA
14169080 TGC
1 TGC
14169083 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TGCTTAGACTGGGAATAAACTCCGTA
Found at i:14169277 original size:26 final size:26
Alignment explanation
Indices: 14169239--14169291 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14169229 CCGATCCGAT
14169239 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14169265 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14169291 C
1 C
14169292 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14169621 original size:159 final size:158
Alignment explanation
Indices: 14169264--14169626 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 158
14169254 AACTCCATAT
* *
14169264 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCACAAAATGAACATGCGGGCGCTCAG
*
14169329 CCGGTCGGAGAGGCAGAATGCGCAAGCCGCAGACTGACCAGGTCCCCCCTACATGCTATCGATCC
66 CCGCTCGGAGAGGCAGAATGCGCAAGCCGCAGACTGACCAGGTCCCCCCTACATGCTATCGATCC
* * *
14169394 TGCTGCCGCAACCCTCGGTCTAGTCTGA
131 CGCTGCCACAACCCTCGGTCTAGACTGA
* * * * * * * *
14169422 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAATGAACGTTCGGGCTCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAA-TCCAACCCACAAAATGAACATGCGGGCGCTC
* * ** * * * *
14169485 AGCCGACT-GGAGAGGCATAATGCGTAAGCCGGGGA-TCGACCCGGTCCCCCTCTGCGTGCTGTC
64 AGCCG-CTCGGAGAGGCAGAATGCGCAAGCCGCAGACT-GACCAGGTCCCCC-CTACATGCTATC
* * *
14169548 GATCCCGCTGCCACAATCCTCGGTC-CGACTGGG
126 GATCCCGCTGCCACAACCCTCGGTCTAGACT-GA
* **
14169581 GCTTAGACATGGAATGAACTCCCTACACCTAATCCAACCCACAAAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCACAAAA
14169627 CGGGCGTGCA
Statistics
Matches: 166, Mismatches: 31, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 94 0.57
159 69 0.42
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCACAAAATGAACATGCGGGCGCTCAG
CCGCTCGGAGAGGCAGAATGCGCAAGCCGCAGACTGACCAGGTCCCCCCTACATGCTATCGATCC
CGCTGCCACAACCCTCGGTCTAGACTGA
Found at i:14169781 original size:26 final size:26
Alignment explanation
Indices: 14169741--14169818 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
14169731 TGGTCTAATG
*
14169741 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
14169767 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
14169793 TTAGACAT-GGAATGAACTCTGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
14169819 CTAAGCCAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14169934 original size:527 final size:527
Alignment explanation
Indices: 14169239--14170319 Score: 1402
Period size: 527 Copynumber: 2.1 Consensus size: 527
14169229 CCGATCCGAT
* *
14169239 CTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
1 CTTAGACTGGGGATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
* * * *
14169304 ACAAAATGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGCAGACTGACCA
66 ACAAAATGAACATGAGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGCAGACCGACCA
* * *
14169369 GGTCCCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGG-TCTAGTCTGATCTTAGATTGG
131 GATCCCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGGTTC-AGTCTAATCTTAGACTGG
* * * *
14169433 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTTCGGGC-TCTGAGCCGACTGGAG
195 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCGT-TGAGCCGACCGGAG
* * * * * *
14169497 AGGCATAATGCGTAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCA
259 AGGCACAATGCGTAAGCCGGGGAT-GAGCCCGATCCCCCACTACGTGCTGCCAATCCCGCTGCCA
* *
14169561 CAATCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTACACCTAATCCAACCCACA-A
323 CAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCA-AGA
* ** * **
14169625 AACGGGCGTGCAGGCACTCAACCG-TCCCGAGAGGCAAAAT-TCGCAAGCTAGGGATCGGCTTGG
387 AACGGGCGTACAGGCACTCAACCGAT-CCGAGAGGCAAAATGT-AAAAGCTAGGGATCAGCCCGG
* * * * * *
14169688 TCCC-CACTGCATGCTGCCGATCTTGCTACCGCAACCCTCGGTTTGGTCTAATGTTAGATTGGGA
450 TCCCTC-CTGCATGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGA
14169752 ATGAACTCCGTATG
514 ATGAACTCCGTATG
**
14169766 CTTAGACTGGGGATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
1 CTTAGACTGGGGATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
* * * * * * * ** * *
14169831 ACGAAATGAACGTGAGAGTGCTCAGCCTGTTGGAGAGGTAGAATGCGCAAGCTGGGGACCGGCCC
66 ACAAAATGAACATGAGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGCAGACCGACCA
* * * * *
14169896 GATCCCCCCTACGTGCTGTCGATCTTGCTGCTGCAACCCTCGGTTCGGTCTAATCTTAGACTGGG
131 GATCCCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGGTTCAGTCTAATCTTAGACTGGG
* *
14169961 AATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCCGACCGGAGAG
196 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCGTTGAGCCGACCGGAGAG
* *
14170026 GCACAATGCGTAAGCTGGGGATTAGCCCGATCCCCCACTACGTGCTGCCAATCCCGCTGCCACAA
261 GCACAATGCGTAAGCCGGGGATGAGCCCGATCCCCCACTACGTGCTGCCAATCCCGCTGCCACAA
* * **
14170091 CCCTCGGTCCGGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACG
326 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCAAGAAACG
* * * * * *
14170156 GGTGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGTAAAAGCTGGGGATCAGCCCGGTCCCTC
391 GGCGTACAGGCACTCAACCGATCCGAGAGGCAAAATGTAAAAGCTAGGGATCAGCCCGGTCCCTC
** * * * *
14170221 CTGTGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGATTTGATCTTAGACTGGGAATGAACT
456 CTGCATGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAACT
14170286 CCGTATG
521 CCGTATG
*
14170293 CTTAGACTGGGGATGAACTTCGTATGC
1 CTTAGACTGGGGATGAACTCCGTATGC
14170320 CTAAGTCAAC
Statistics
Matches: 475, Mismatches: 72, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
526 2 0.00
527 467 0.98
528 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (527 bp):
CTTAGACTGGGGATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
ACAAAATGAACATGAGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGCAGACCGACCA
GATCCCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGGTTCAGTCTAATCTTAGACTGGG
AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCGTTGAGCCGACCGGAGAG
GCACAATGCGTAAGCCGGGGATGAGCCCGATCCCCCACTACGTGCTGCCAATCCCGCTGCCACAA
CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCAAGAAACG
GGCGTACAGGCACTCAACCGATCCGAGAGGCAAAATGTAAAAGCTAGGGATCAGCCCGGTCCCTC
CTGCATGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAACT
CCGTATG
Found at i:14170135 original size:159 final size:158
Alignment explanation
Indices: 14169792--14170293 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 158
14169782 ACTCCGTATG
* * * * * *
14169792 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACGTGAGAGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14169857 CTG-TTGGAGAGGTAGAATGCGCAAGCTGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCT
66 C-GATCGGAGAGGCAGAATGCGAAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATCC
* ** *
14169921 TGCTGCTGCAACCCTCGGTTCGGTCTAAT
130 CGCTGCCACAACCCTCGGTCCGGTCTAAT
* * * * *
14169950 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
14170014 CCGACCGGAGAGGCACAATGCGTAAGCTGGGGATTAGCCCGATCCCCCACTACGTGCTGCCAATC
65 CCGATCGGAGAGGCAGAATGCGAAAGCTGGGGATCAGCCCGATCCCCC-CTACGTGCTGCCAATC
**
14170079 CCGCTGCCACAACCCTCGGTCCGG-CTGGGGT
129 CCGCTGCCACAACCCTCGGTCCGGTCT--AAT
* * * * * *
14170110 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGTGTACGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * ** * * *
14170174 CGATCGGAGAGGCAGAATGTAAAAGCTGGGGATCAGCCCGGTCCCTCCTGTGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGAAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATCCC
* * * * * *
14170239 ACTGCCGCAACCCTCGGTCTGATTTGAT
131 GCTGCCACAACCCTCGGTCCGGTCTAAT
14170267 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14170294 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 145 0.53
159 124 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGAAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCTGCCAATCCC
GCTGCCACAACCCTCGGTCCGGTCTAAT
Found at i:14170303 original size:26 final size:26
Alignment explanation
Indices: 14170267--14170319 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14170257 CTGATTTGAT
14170267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14170293 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14170319 C
1 C
14170320 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14172758 original size:27 final size:27
Alignment explanation
Indices: 14172728--14172780 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
14172718 TTTTCTATTT
* *
14172728 TTCTTGATTTTTGAAACTTTTTTTAGG
1 TTCTGGATTTTTGAAAATTTTTTTAGG
*
14172755 TTCTGGATTTTTTAAAATTTTTTTAG
1 TTCTGGATTTTTGAAAATTTTTTTAG
14172781 CAAGAGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.06, G:0.13, T:0.60
Consensus pattern (27 bp):
TTCTGGATTTTTGAAAATTTTTTTAGG
Found at i:14173748 original size:159 final size:160
Alignment explanation
Indices: 14173190--14173776 Score: 477
Period size: 159 Copynumber: 3.7 Consensus size: 160
14173180 GGCTCAAAAT
** * * * * * *
14173190 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGTGCTGAG
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
* * * * * *
14173254 CCGATC--GAAGAGGCATAATGCGCAAGCCAGGGAT-GCCCCGGTCCCCCTCTGTGTGCTGCCAG
66 CCG-TCTGGAA-AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGG
* * * *
14173316 TCCCACCA-CCACAACGC-TCGATCCGGCTGGGG
129 TCCCA-CAGCCATAACACTTAG-TCCGACTGGGG
* * *
14173348 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGACGCTCAG
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
* * * * * * *
14173412 CCGACTGGAGAGGCAGAATGCGTAAGCC-GAAGATCGACCCGGT-CCCCT-TGCGTGCTATCGAT
66 CCGTCTGGAAAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCCCTCTGCGTGCTGTCGGT
** * * * * * **
14173474 CTTACTGCCGTAACACTCAGTCTGA-TCCGAT
130 CCCACAGCCATAACACTTAGTCCGACT-GGGG
* ** * * * * * *
14173505 CTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTGAA
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
* * *
14173569 CCGGCTGGAGAGGCATAATGCGCAAGCC-GAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGT
66 CCGTCTGGAAAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCCCTCTGCGTGCTGTCGGT
* *
14173633 CCCGCAGCCATAACCCTTAGTCCGACTGGGG
130 CCCACAGCCATAACACTTAGTCCGACTGGGG
* *
14173664 CTTAGACAT-GGAATTAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCATGCGGGCGCTCA
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCATGCAGGCGCTCA
* * *
14173727 GCCAGTC-AGAAAGGTAGAATGCACAAGCCAGGGATCGACCCGATCCCCCT
65 GCC-GTCTGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCT
14173777 ACGTGCTGTC
Statistics
Matches: 333, Mismatches: 80, Indels: 31
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 113 0.34
158 85 0.26
159 127 0.38
160 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (160 bp):
CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
CCGTCTGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTC
CCACAGCCATAACACTTAGTCCGACTGGGG
Found at i:14173765 original size:316 final size:315
Alignment explanation
Indices: 14173188--14173839 Score: 794
Period size: 316 Copynumber: 2.1 Consensus size: 315
14173178 GTGGCTCAAA
* * * **
14173188 ATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGTGCTGA
1 ATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATGCAGGCACTGA
* * * *
14173253 GCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATGCCCCGGTCCCCCTCTGTGTGCTGCCAGTC
66 ACCGATCGAAGAGGCATAATGCGCAAGCCAGGGATGACCCGATCCCCCTCTGCGTGCTGCCAGTC
* * *
14173318 CCACCACCACAACGCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
131 CCACCACCACAACCCTAGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * **
14173383 ACCCACGAAACGGGCGTGCAGACGCTCAGCCGACTGGAGAGGCAGAATGCGTAAGCCGAAGATCG
196 ACCCACGAAACAGGCATGCAGACGCTCAGCCGACTAGAAAGGCAGAATGCACAAGCCGAAGATCG
* * * * * * *
14173448 ACCCGGTCCCCTTGCGTGCTATCGATCTTACTGCCGTAACACTCAGTCTGATCCG
261 ACCCGATCCCCCTACGTGCTATCGATCCTACTGCCGCAACACTCAATCCGATCCG
* * *
14173503 ATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTGA
1 ATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATGCAGGCACTGA
* * * *
14173568 ACCG-GCTGGAGAGGCATAATGCGCAAGCC-GAGGATCGACCCGATCCCCCTCTGCGTGCTGTCG
66 ACCGATC-GAAGAGGCATAATGCGCAAGCCAG-GGAT-GACCCGATCCCCCTCTGCGTGCTGCCA
* * *
14173631 GTCCC-GCAGCCATAACCCTTAG-TCCGACTGGGGCTTAGACATGGAATTAACTCCCTATGCCTA
128 GTCCCACCA-CCACAACCC-TAGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * *
14173694 AGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCC-AGTCAGAAAGGTAGAATGCACAAGCC-A
191 AGCCAACCCACGAAACAGGCATGCAGACGCTCAGCCGACT-AGAAAGGCAGAATGCACAAGCCGA
* * * * * *
14173757 GGGATCGACCCGATCCCCCTACGTGCTGTCGATCCTACTGTCGCAACCCTCAATCCGGTCTG
255 -AGATCGACCCGATCCCCCTACGTGCTATCGATCCTACTGCCGCAACACTCAATCCGATCCG
14173819 ATCTTAGACTGGGAATGAACT
1 ATCTTAGACTGGGAATGAACT
14173840 TCATATGCTT
Statistics
Matches: 284, Mismatches: 46, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
314 2 0.01
315 90 0.32
316 190 0.67
317 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (315 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATGCAGGCACTGA
ACCGATCGAAGAGGCATAATGCGCAAGCCAGGGATGACCCGATCCCCCTCTGCGTGCTGCCAGTC
CCACCACCACAACCCTAGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAACAGGCATGCAGACGCTCAGCCGACTAGAAAGGCAGAATGCACAAGCCGAAGATCG
ACCCGATCCCCCTACGTGCTATCGATCCTACTGCCGCAACACTCAATCCGATCCG
Found at i:14173976 original size:21 final size:21
Alignment explanation
Indices: 14173950--14173990 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14173940 GGGATCAGCC
*
14173950 CGATCCCTCT-CTGCGTGCTGT
1 CGATCCCACTGCTG-GTGCTGT
14173971 CGATCCCACTGCTGGTGCTG
1 CGATCCCACTGCTGGTGCTG
14173991 CTGCTGGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.07, C:0.37, G:0.27, T:0.29
Consensus pattern (21 bp):
CGATCCCACTGCTGGTGCTGT
Found at i:14174217 original size:26 final size:26
Alignment explanation
Indices: 14174188--14174240 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14174178 CCGGTCTGAT
*
14174188 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14174214 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14174240 C
1 C
14174241 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14174336 original size:367 final size:366
Alignment explanation
Indices: 14173660--14174349 Score: 809
Period size: 367 Copynumber: 1.9 Consensus size: 366
14173650 TAGTCCGACT
* * * *
14173660 GGGGCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCT
1 GGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGACGCT
* * * * **
14173725 CAGCCAGTCAGAAAGGTAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTACGTGCTGTCGAT
66 CAACCAGCCAGAAAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTACATGCTACCGAT
*
14173790 CCTACTGTCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACT
131 CCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACT
* * * * * * *
14173855 GGGGATGAACTCTGTATGCCTGAGTCAACCCATGAAACGAGCGTGCAGTCACTCAGACGGCCGAA
196 GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGTCACTCAGACGACCGAA
* * ** * * * *
14173920 GACTCATAATGCGCAATTCAGGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATCCCACTGCTG
261 GACGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCCTACGTGCTGTCAATCCCACTGCTG
14173985 GTGCTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCAGTG
326 GTGCTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCAGTG
** *
14174026 GGGGCTTAAACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAAC-GAGCATGCGGATGC
1 GGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAG-GCATGCGGACGC
* ** * *
14174090 TCAACC-GACCAGAAAGGCAGAATGCGCAAGCTGGGGATCGATCCGATCCCCCTTGCATGCTACC
65 TCAACCAG-CCAGAAAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCC-TACATGCTACC
* * * * *
14174154 GATCTTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTA
128 GATCCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTC-ATATGCTTA
* * *
14174218 GACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGT-GCTCA-ATC
192 GAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-AGTCACTCAGA-C
* * * ** * *
14174280 GATCGGAGAGGCAGAATGCGTGAGCCGGGGATCGGCCCCG-TCCCCCCCTACGTGCTGTCAATCC
254 GACCGAAGACGCAGAATGCGCAAGCCAGGGATCAG-CCCGATCCCCCCCTACGTGCTGTCAATCC
*
14174344 TACTGC
318 CACTGC
14174350 CGCAACCCTT
Statistics
Matches: 266, Mismatches: 50, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
365 2 0.01
366 101 0.38
367 156 0.59
368 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (366 bp):
GGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGACGCT
CAACCAGCCAGAAAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTACATGCTACCGAT
CCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGTCACTCAGACGACCGAA
GACGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCCTACGTGCTGTCAATCCCACTGCTG
GTGCTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCAGTG
Found at i:14174558 original size:159 final size:159
Alignment explanation
Indices: 14174213--14174573 Score: 359
Period size: 159 Copynumber: 2.3 Consensus size: 159
14174203 AACTCTGTAT
*
14174213 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGCGCTCAA
* *** * * *
14174278 TCGATCGGAGAGGCAGAATGCGTGAGCCGGGGATCGGCCCCGTCCCCCCCTACGTGCTGTCAATC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCCCCCTACGTGCTGACAAGC
* * *
14174343 CTACTGCCGCAACCCTTGGTTCGATCCGA
131 CTACTGCCACAACCCTCGGTCCGATCCGA
* * * ** * * * * *
14174372 TCTTAGATAGGGAATGAACTTTGTATGCCTAAGTCAACCCA-TGAGACGAGCGTGCGGGCGTTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGA-ACGAGCGTACGGGCGCTCA
* * * * * * **
14174436 GCCGGTCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCCAGTCCCCCTCTGCGTGCT-ACCGG
65 ACCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCCCCCTACGTGCTGACAAG
* * * *
14174500 CCTCGCTGTCACAACCCTCGGTCCGA-CTGGG
130 CCT-ACTGCCACAACCCTCGGTCCGATC-CGA
* *
14174531 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
14174574 AAATGGCCAT
Statistics
Matches: 156, Mismatches: 42, Indels: 7
0.76 0.20 0.03
Matches are distributed among these distances:
158 7 0.04
159 149 0.96
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGCGCTCAA
CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCCCCCTACGTGCTGACAAGC
CTACTGCCACAACCCTCGGTCCGATCCGA
Found at i:14175027 original size:158 final size:158
Alignment explanation
Indices: 14174715--14175050 Score: 392
Period size: 158 Copynumber: 2.1 Consensus size: 158
14174705 ACTCCATATG
* * * * *
14174715 CTTAGACTAGGG-ATGAACTCTGTATGCCTAAGTTAACCCATAAAATGAGAGTGCGGGTGCTCAA
1 CTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCATAAAATAAGAGTGCGGGCGCTCAA
* * * * *
14174779 CCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCTCCACTGCGTGCTGTCGATC
65 CCGACCGAAGAGGCAGAATACGCAAGTCGAGGATCGACCCGATCCTCCACTGCGTGCTGTCGATC
* *
14174844 CTGTTGCCATAACCTTCAGTCGATCTGAT
130 CTGCTGCCATAACCCTCAGTCGATCTGAT
* * * *
14174873 CTTAGACTGGGAATGAACTCCGTCTGCATAAGTCAACCCATGAAATAAGCGTGCGGGCGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAATAAGAGTGCGGGCGCTCAAC
* * *
14174938 TGGCCGAAGAGGCAGAATACGCAAG-CTGGGGATCGACCCGATCC-CC-CTTGCGTGCTGTCGAT
66 CGACCGAAGAGGCAGAATACGCAAGTC-GAGGATCGACCCGATCCTCCAC-TGCGTGCTGTCGAT
* * *
14175000 CCTGCTGTCGTAACCCTCGGTCTGATCTGAT
129 CCTGCTGCCATAACCCTCAGTC-GATCTGAT
* *
14175031 CCTAGAATGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
14175051 TATATGCTTA
Statistics
Matches: 150, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
156 1 0.01
157 37 0.25
158 112 0.75
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAATAAGAGTGCGGGCGCTCAAC
CGACCGAAGAGGCAGAATACGCAAGTCGAGGATCGACCCGATCCTCCACTGCGTGCTGTCGATCC
TGCTGCCATAACCCTCAGTCGATCTGAT
Found at i:14175214 original size:26 final size:26
Alignment explanation
Indices: 14175176--14175228 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14175166 GTCTTAAACT
14175176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14175202 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14175228 C
1 C
14175229 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14175301 original size:487 final size:488
Alignment explanation
Indices: 14174688--14175594 Score: 1153
Period size: 488 Copynumber: 1.9 Consensus size: 488
14174678 TCTGGTCTGA
* * ** *
14174688 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTTAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAAC
* * * ** * * * * *
14174753 CATAAAATGAGAGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCT
66 CACAAAACGAGAGTACGGGCACTCAACCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACC
** * * * * * * **
14174818 CGGTCCTCCACTGCGTGCTGTCGATCCTGTTGCCATAACCTTCAGT-CGATCT-GATCTTAGAC-
131 CAATCCCCCACTACGTGCTGTCGATCCCGCTGCCACAACCCTCAGTCCGA-CTGGAGATTAGACA
* * * * * * *
14174880 TGGGAATGAACTCCGTCTGCATAAGTCAACCCATGAAATAAGCGTGCGGGCGCTGAACT-GGCCG
195 T-GGAATGAACTCCCTATACATAAGGCAACCCACGAAACAAGCATGCGGGCGCT-AACTCGGCCG
* * *
14174944 AAGAGGCAGAATACGCAAG-CTGGGGATCGACCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGT
258 AAGAGGCAGAATACGCAAGTC-GAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGT
** * * *
14175008 CGTAACCCTCGGTCTGATCTGATCCTAGAATGGGAATGAACTCTATATGCTTAGACTGGGGATAA
322 CACAACCCTCGGTCTGATCCGATCCTAGAATGGGAATGAACTCCATATGCTTAGACTGGGAATAA
* *
14175073 ACTTCGTATGCGTAAGTCAACCCATAAAACGAGCCTACCTCGGACAAAAAAAATACGACACCAGC
387 ACTCCGTATGCCTAAGTCAACCCATAAAACGAGCCTACCTCGGACAAAAAAAATACGACACCAGC
14175138 ACATGCCCAAGCCCAGCATGTGCATCATGTCTTAAAC
452 ACATGCCCAAGCCCAGCATGTGCATCATGTCTTAAAC
*
14175175 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAAA
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAAA
* * * *
14175239 CCACGAAACGAGCA-TACGGGCACTCAGCTGGCCAGAGAGGCAGAATGCACAAGCCGAGGATCGA
65 CCACAAAACGAG-AGTACGGGCACTCAACCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGA
* * * * *
14175303 CCCAATCCCCCTCTACGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGATTAGAC
129 CCCAATCCCCCACTACGTGCTGTCGATCCCGCTGCCACAACCCTCAGTCCGACTGGAGATTAGAC
* ** * * *
14175368 ATGGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGGGCATGCGGGCGCTCAGTCGGCCGG
194 ATGGAATGAACTCCCTATACATAAGGCAACCCACGAAACAAGCATGCGGGCGCTAACTCGGCCGA
*
14175433 AGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCA
259 AGAGGCAGAATACGCAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCA
*
14175498 CAACCCTCGGTCTGATCCGATCCTAGAATGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
324 CAACCCTCGGTCTGATCCGATCCTAGAATGGGAATGAACTCCATATGCTTAGACTGGGAATAAAC
* *
14175563 TCCGTATGCCTAAGTCAACCCATGAAATGAGC
389 TCCGTATGCCTAAGTCAACCCATAAAACGAGC
14175595 GTGCGGGCAT
Statistics
Matches: 351, Mismatches: 62, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
486 1 0.00
487 144 0.41
488 204 0.58
489 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.21
Consensus pattern (488 bp):
TCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAAC
CACAAAACGAGAGTACGGGCACTCAACCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACC
CAATCCCCCACTACGTGCTGTCGATCCCGCTGCCACAACCCTCAGTCCGACTGGAGATTAGACAT
GGAATGAACTCCCTATACATAAGGCAACCCACGAAACAAGCATGCGGGCGCTAACTCGGCCGAAG
AGGCAGAATACGCAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCACA
ACCCTCGGTCTGATCCGATCCTAGAATGGGAATGAACTCCATATGCTTAGACTGGGAATAAACTC
CGTATGCCTAAGTCAACCCATAAAACGAGCCTACCTCGGACAAAAAAAATACGACACCAGCACAT
GCCCAAGCCCAGCATGTGCATCATGTCTTAAAC
Found at i:14175557 original size:26 final size:26
Alignment explanation
Indices: 14175521--14175571 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14175511 GATCCGATCC
14175521 TAGAATGGGAATGAACTCCATATGCT
1 TAGAATGGGAATGAACTCCATATGCT
* *
14175547 TAGACTGGGAATGAACTCCGTATGC
1 TAGAATGGGAATGAACTCCATATGC
14175572 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCATATGCT
Found at i:14175686 original size:184 final size:184
Alignment explanation
Indices: 14175362--14175693 Score: 418
Period size: 184 Copynumber: 1.8 Consensus size: 184
14175352 CGACTGGGGA
* *
14175362 TTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGGGCATGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGAGCATGCGGGCACTCAGTC
* * * *
14175427 GGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTG
66 GACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCCG
*
14175492 CTGTCACAACCCTCGGTCTGATCCGATCCTAGAATGGGAATGAACTCCATATGC
131 CTGCCACAACCCTCGGTCTGATCCGATCCTAGAATGGGAATGAACTCCATATGC
* * * * * * * *
14175546 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCATTGAG-
1 TTAGACAT-GGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGAGCATGCGGGCACTCAGT
* * * * ** *
14175609 CTGACCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGC-GTCGGTC
65 C-GACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTACGTGCTGTCGATC
14175673 CCGCTGCCACAACCCTCGGTC
128 CCGCTGCCACAACCCTCGGTC
14175694 CGACTGGGGG
Statistics
Matches: 123, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
183 2 0.02
184 115 0.93
185 6 0.05
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGAGCATGCGGGCACTCAGTC
GACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCCG
CTGCCACAACCCTCGGTCTGATCCGATCCTAGAATGGGAATGAACTCCATATGC
Found at i:14175889 original size:26 final size:26
Alignment explanation
Indices: 14175860--14175912 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14175850 TCGATCTGAT
*
14175860 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14175886 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14175912 C
1 C
14175913 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14175964 original size:341 final size:343
Alignment explanation
Indices: 14175175--14175982 Score: 1097
Period size: 341 Copynumber: 2.4 Consensus size: 343
14175165 TGTCTTAAAC
* *
14175175 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAA
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAC
* * **
14175239 CCACGAAACGAGCATACGGGCACTCAGCTGGCCAGAGAGGCAGAATGCACAAGCCGAGGATCGAC
65 CCATGAAACGAGCATACGGGCACTCAGCTGACCAGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
*
14175304 CCAATCCCCCTCTACGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGATTAGACA
130 CCAATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGATTAGACA
* * ** * *
14175369 TGGAATGAACTCCCTATACCTAAGGCAACCCACGAAACGGGCATGCGGGCGCTCAGTCGGCCGGA
195 TGGAATAAACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGCAAGCGCTCAGCCGGCCGAA
* * *
14175434 GAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCAC
260 GAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTGTCAC
14175499 AACCCTCGGTCTGATCCGA
325 AACCCTCGGTCTGATCCGA
* * *
14175518 TCCTAGAATGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
14175583 CATGAAATGAGCGTGCGGGCATTGAGCTGACC-GAAGAGGCATAATGCGTAAGCCGGGGATCGAC
66 CATGAAACGAGCATACGGGCACTCAGCTGACCAG-AGAGGCAGAATGCGTAAGCCGAGGATCGAC
** ** *
14175647 CCGGTCCCCCTCTGTGTGC-GTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGGTTAGACA
130 CCAATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGATTAGACA
* * **
14175711 TGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCAAGCGCTCAGCCGGCCGAA
195 TGGAATAAACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGCAAGCGCTCAGCCGGCCGAA
* * * *
14175776 GAGGCAGAATGTGCAAGCC-AGGGATCG-CTCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCA
260 GAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTGTCA
* *
14175839 CAACCCTCGAT-TCGATCTGA
324 CAACCCTCGGTCT-GATCCGA
* *
14175859 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
14175924 CATGAAACGAGCATACGAGCGCTCAACCGACCAGAGAGGCAGGATGCGTAAGCTGAGGA
66 CATGAAACGAGCATACGGGCACTCAGCTGACCAGAGAGGCAGAATGCGTAAGCCGAGGA
14175983 CCGAACGGAT
Statistics
Matches: 401, Mismatches: 59, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
340 1 0.00
341 152 0.38
342 124 0.31
343 124 0.31
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (343 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CATGAAACGAGCATACGGGCACTCAGCTGACCAGAGAGGCAGAATGCGTAAGCCGAGGATCGACC
CAATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGATTAGACAT
GGAATAAACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGCAAGCGCTCAGCCGGCCGAAG
AGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTGTCACA
ACCCTCGGTCTGATCCGA
Found at i:14176620 original size:26 final size:26
Alignment explanation
Indices: 14176582--14176634 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14176572 GGCTCAAAAT
14176582 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
14176608 CTTAGAC-GTGGAATGAACTCTATATG
1 CTTAGACTG-GGAATGAACTCTATATG
14176634 C
1 C
14176635 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:14177480 original size:26 final size:26
Alignment explanation
Indices: 14177451--14177503 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14177441 CCGATCTGAT
*
14177451 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATCAACTCCGTATG
14177477 CTTAGACATGGAATCAACTCCGTATG
1 CTTAGACATGGAATCAACTCCGTATG
14177503 C
1 C
14177504 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATCAACTCCGTATG
Found at i:14177967 original size:26 final size:26
Alignment explanation
Indices: 14177928--14177981 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
14177918 GGTTTGATCT
14177928 TAGACTGGAAATGAACTCTATATACC
1 TAGACTGGAAATGAACTCTATATACC
** * *
14177954 TAGACTGGGGATGAACTCTGTATGCC
1 TAGACTGGAAATGAACTCTATATACC
14177980 TA
1 TA
14177982 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCTATATACC
Done.