Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 81 of 138
Found at i:14178689 original size:26 final size:26
Alignment explanation
Indices: 14178660--14178729 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
14178650 TCTTACACTG
*
14178660 GGAATGAACTTCATATGCTTAGACAA
1 GGAATGAACTTCGTATGCTTAGACAA
* * *
14178686 GGAATCAACTCCGTATGCTTAGACAT
1 GGAATGAACTTCGTATGCTTAGACAA
14178712 GGAATGAACTTCGTATGC
1 GGAATGAACTTCGTATGC
14178730 CTAAGCCAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
GGAATGAACTTCGTATGCTTAGACAA
Found at i:14178902 original size:26 final size:26
Alignment explanation
Indices: 14178873--14178925 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14178863 TCGATCCGAT
14178873 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14178899 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14178925 C
1 C
14178926 CTAAACTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14179451 original size:26 final size:26
Alignment explanation
Indices: 14179422--14179491 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
14179412 TCTTACACCG
14179422 GGAATGAACTCCGTATGCTTAGACAA
1 GGAATGAACTCCGTATGCTTAGACAA
* *
14179448 GGAACGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAA
*
14179474 GGAATGAATTCCGTATGC
1 GGAATGAACTCCGTATGC
14179492 CTAAACCAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAA
Found at i:14179674 original size:26 final size:26
Alignment explanation
Indices: 14179636--14179687 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14179626 CGATCCAATT
14179636 TTAGACTATGAATGAACTCCGTATGC
1 TTAGACTATGAATGAACTCCGTATGC
14179662 TTAGAC-ATGGAATGAACTCCGTATGC
1 TTAGACTAT-GAATGAACTCCGTATGC
14179688 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGACTATGAATGAACTCCGTATGC
Found at i:14179961 original size:159 final size:157
Alignment explanation
Indices: 14179661--14180188 Score: 524
Period size: 159 Copynumber: 3.3 Consensus size: 157
14179651 ACTCCGTATG
* *
14179661 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGTGCTCAG
* * ** *
14179725 CTGGCCGGAGAGGCAGAATACGTAAGCCAGGGATTGGCTTGGTCCCCCCCTGCGTGCTGTCTATC
64 CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGT-CCCCCCTGCGTGCTGTCGATC
*
14179790 CTACT-CCTACAACCCTCGGTCCGGTCCGAT
128 CTGCTGCC-ACAACCCTCGGTCCGGTCCGAT
* * * *
14179820 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-TGCTCAGC
* * * * ** *
14179885 TGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCACCACTGCGTGCTACCGGTCC
65 TGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCC-CCCCTGCGTGCTGTCGATCC
* * * **
14179950 CGCTGCCACAACCCTTGGTCCGG-CTGGGG
129 TGCTGCCACAACCCTCGGTCCGGTC-CGAT
* * * * * *
14179979 CTTAGACATA-GAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGTGTGTGGGTGCTCAG
1 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGTGCTCAG
* ** * * * * *
14180043 CCGATCAGAGAGGCAGAATGCACACGTCAGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
64 CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * ** *
14180108 TGTTGCCGCAACCCTCGATCTAGTCCAAT
129 TGCTGCCACAACCCTCGGTCCGGTCCGAT
* * *
14180137 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
14180189 ACTGGCGCTC
Statistics
Matches: 294, Mismatches: 66, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 79 0.27
159 207 0.70
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGCTCAGCT
GGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:14180236 original size:317 final size:318
Alignment explanation
Indices: 14179660--14180236 Score: 710
Period size: 317 Copynumber: 1.8 Consensus size: 318
14179650 AACTCCGTAT
* * * *
14179660 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGTGCTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGTGCAGGTGCTCAG
* * * ** ** * *
14179725 CTGGCCGGAGAGGCAGAATACGTAAGCCAGGGATTGGCTTGGTCCCCCCCTGCGTGCTGTCTATC
66 CCGACCAGAGAGGCAGAATACACAAGCCAGGGATTGGCCCGATCCCCCCCTGCGTGCTGTCGATC
* * * *
14179790 CTACTCCTACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCA
131 CTACTCCTACAACCCTCGATCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * * *
14179855 ACCCATGAAACGAGCGTGCGGTTGCTGAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCG
196 ACCCACGAAACGAGCGTACGGTCGCTCAGCCGACCAGAGAGACAGAATGCGCAAGCCGGGGATCG
14179920 GCCCGGTCCACCACTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGGCTGGG
261 GCCCGGTCCACCACTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGGCTGGG
*** * **
14179978 GCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGTGTGTGGGTGCTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGTGCAGGTGCTCAG
* * * *
14180043 CCGATCAGAGAGGCAGAATGCACACGTCAGGGATTGGCCCGAT-CCCCCCTGCGTGCTGTCGATC
66 CCGACCAGAGAGGCAGAATACACAAGCCAGGGATTGGCCCGATCCCCCCCTGCGTGCTGTCGATC
** * * * *
14180107 CTGTTGCC-GCAACCCTCGATCTAGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTC
131 CTACT-CCTACAACCCTCGATCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * *
14180171 AACCCACGAAACGAGCGTACTGG-CGCTCAGCCGACCAGAGAGACAGGATGTGCAAGTCGGGGAT
195 AACCCACGAAACGAGCGTAC-GGTCGCTCAGCCGACCAGAGAGACAGAATGCGCAAGCCGGGGAT
14180235 CG
259 CG
14180237 AACGGGTGGT
Statistics
Matches: 212, Mismatches: 45, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
317 122 0.58
318 90 0.42
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (318 bp):
GCTTAGACATAGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGTGCAGGTGCTCAG
CCGACCAGAGAGGCAGAATACACAAGCCAGGGATTGGCCCGATCCCCCCCTGCGTGCTGTCGATC
CTACTCCTACAACCCTCGATCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTACGGTCGCTCAGCCGACCAGAGAGACAGAATGCGCAAGCCGGGGATCG
GCCCGGTCCACCACTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGGCTGGG
Found at i:14187257 original size:26 final size:26
Alignment explanation
Indices: 14187221--14187273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14187211 CTGATTCGAT
14187221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14187247 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14187273 C
1 C
14187274 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14187969 original size:159 final size:155
Alignment explanation
Indices: 14187625--14188063 Score: 477
Period size: 159 Copynumber: 2.8 Consensus size: 155
14187615 AACTCTGTAT
* * * *
14187625 GCTTAGACATGGAATGAACTTCGTATTCCTAAGCCAACCCATGAAACGAGCGTGTGAGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGCATGTGAGCACTCAG
* * * * **
14187690 CCGGTTGGAGAAGCAGAATGCGCAAGCGGGGGATCGACTCAATCCCCCCTACGTGCTGTCGATCC
65 CCGGCTGGAGAGGCAGAATGCGCAAGC-GGGGATCG-CTCGATCCCCCCTGCGTGCTACCGATCC
*
14187755 TACTGCTGTAACCCTCGGTCTGGTCCGA
128 CACTGCTGTAACCCTCGGTCTGGTCCGA
* ** * * *
14187783 TCTTAGAC-TGGAAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCACGTGGGCACTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGCATGTGAGCACTCA
* *
14187847 GCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGTCTCGATCCCCCTCTGCGTGCTACCGAT
64 GCCGGCTGGAGAGGCAGAATGCGCAAG-CGGGGATCG-CTCGATCCCCC-CTGCGTGCTACCGAT
** * * * *
14187912 CCCGTTGTTGTAACCCTTGGTCTGG-CTGGG
126 CCCACTGCTGTAACCCTCGGTCTGGTC-CGA
* * * *
14187942 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGA-GCATGTGAGCACTCAG
* *
14188007 CCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCT
65 CCGGCTGGAGAGGCAGAATGCGCAAG-CGGGGATC-GCTCGATCCCCCCTGCGTGCT
14188064 GTCGATCCTA
Statistics
Matches: 232, Mismatches: 42, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 101 0.44
159 124 0.53
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGAGCATGTGAGCACTCAGC
CGGCTGGAGAGGCAGAATGCGCAAGCGGGGATCGCTCGATCCCCCCTGCGTGCTACCGATCCCAC
TGCTGTAACCCTCGGTCTGGTCCGA
Found at i:14188142 original size:26 final size:26
Alignment explanation
Indices: 14188102--14188152 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14188092 CGATCTGATA
14188102 TTAGACTGGGAATGAACTT-CGTATGG
1 TTAGACTGGGAATGAA-TTCCGTATGG
*
14188128 TTAGACTGGGGATGAATTCCGTATG
1 TTAGACTGGGAATGAATTCCGTATG
14188153 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAATTCCGTATGG
Found at i:14188859 original size:26 final size:26
Alignment explanation
Indices: 14188821--14188873 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14188811 GGCTCTAAAT
*
14188821 CTTAGACTAGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14188847 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14188873 C
1 C
14188874 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14189910 original size:158 final size:159
Alignment explanation
Indices: 14189479--14189968 Score: 507
Period size: 158 Copynumber: 3.1 Consensus size: 159
14189469 GCCAATCCCA
* * * * *
14189479 CTGTCGGTCCTGCTGCCACAACCCTTGGTCCGCT-GGAGCTTAGACATGGAATGAACTCTGC-AT
1 CTGTCGATCCTGCTGCCACAACCCTCGATCTGATCGGAGCTTAGACATGGAATGAACTCT-CTAT
* * * * * * *
14189542 GCCTAAGCCAA-CAATCGAAATGAGTGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGTGTAA
65 GCCTAAGCCAACCCA-CGAAATGAGTGTGCGGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGCAA
*
14189606 GCCAGGGA-TGAACTCGGTCCACCCTC-ACGTG
129 GCCAGGGATTG-GCTCGGTCC-CCCTCTACGTG
* * * * * * *
14189637 CTATCGATCCTGCTGTCACAACCCTCGATCTGATCGTATCATAGA-TTGGGAATGAACTCTGTAT
1 CTGTCGATCCTGCTGCCACAACCCTCGATCTGATCGGAGCTTAGACAT-GGAATGAACTCTCTAT
* * * * * *
14189701 GCCTAAGTCAACCCATGAAATGAGTGTGCGGGTGCTAAGCCGGCC-AGAGAGGCATAATGCACAA
65 GCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCCGA-AGAGGCAAAATGCGCAA
* *
14189765 GCCGGGGATTGGCCCGGTCCCCCTCTACGTG
129 GCCAGGGATTGGCTCGGTCCCCCTCTACGTG
* * *
14189796 CTGTCGAT-CTCGTTGCCACAACCCTC-AGTC-GATTGGGGCTTAGACATGGAATGAACTCTCTA
1 CTGTCGATCCT-GCTGCCACAACCCTCGA-TCTGATCGGAGCTTAGACATGGAATGAACTCTCTA
* * * *
14189858 TGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGCAA
64 TGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGCAA
*
14189923 GCCAGGGATTGGCTCGGTCCCCC-CTGCGTG
129 GCCAGGGATTGGCTCGGTCCCCCTCTACGTG
14189953 CTGTCGATCCTGCTGC
1 CTGTCGATCCTGCTGC
14189969 TGGTCCTACT
Statistics
Matches: 269, Mismatches: 51, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 18 0.07
158 135 0.50
159 112 0.42
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTGTCGATCCTGCTGCCACAACCCTCGATCTGATCGGAGCTTAGACATGGAATGAACTCTCTATG
CCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGCAAGC
CAGGGATTGGCTCGGTCCCCCTCTACGTG
Found at i:14190033 original size:26 final size:26
Alignment explanation
Indices: 14190004--14190056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14189994 TCGATCCGAT
*
14190004 CTTAGAC-TGGGAATGAATTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14190030 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14190056 C
1 C
14190057 CTAAGCCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14190156 original size:671 final size:664
Alignment explanation
Indices: 14188846--14190491 Score: 1637
Period size: 671 Copynumber: 2.5 Consensus size: 664
14188836 AACTCGGTAT
* *
14188846 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAT-CGAAACGAGCGTGCGGGCACTCAG
* * * * ** * *
14188911 CC-AGTCGGAGAGGCAGAATGCGCAAGCCAGGAATCGGCCT-GATCCCCCCTGCA--TGCTATCA
65 CCGA-CCGGAGAGGCAGAATGTGTAAGCCAGGGAT-GAACTCGGT-CCCCCT-CACGTGCTATCG
* * * * * * *
14188972 ATCCTACTATCGCAACCCTCGGTCTGGTC-TGATCTTAGATTGGGAATGAACTCCGTTTACATAA
126 ATCCTGCTGTCACAACCCTCGGTCTGGTCGT-ATCATAGATTGGGAATGAACTCCGTATGCCTAA
* ** * * *
14189036 GTCAACCCATGAAACAAGCGTGCGAAAGCTGAGCCAGTCGAAGAGGCATAATGCGCAAGCCGGGG
190 GTCAACCCATGAAACGAGCGTGCGGGAGCTAAGCCGGCCG-AGAGGCATAATGCGCAAGCCGGGG
* *
14189101 ATCGGCCCGATCCCCCTCTGCGGGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCT
254 ATCGGCCCGATCCCCCTCTACGGGCTGTCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCT
* *
14189166 TAGACATGGAATGAACTCCCTATGCCTAAGGCAATCCCATGAAACGGGCGTACGGACGCTCAGCC
319 TAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCCACGAAACGGGCGTACGGACGCTCAGCC
* * *
14189231 GACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCTACATGCTGTCGATCCTACT
384 GACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCTACATGCTGTCGATCCTACT
* *
14189296 GTCGCAACCCTCGGTCCAGTCCAATCTTAGATTAGGAATGAACTCTGTATGCTTAAACATGGAAT
449 GTCGCAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACATGGAAT
* *
14189361 GAACTCCGTGTGCCTAAGCCAACCCACAAAATGAGCCTACGGGCGCTCAACCGGCCGGAAAGGCA
514 GAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCCTACGGGCGCTCAACCGACCGGAAAGGCA
* * *
14189426 TAATGCGCAAGTCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAATCCCACTGTCGGTCCTG
579 GAATGCGCAAGCCGAGGACCAGCCCGATCCCCCTC-GC--GCTGCCAAT--CACTGTCGGTCCTG
* * *
14189491 CTGCCACAACCCTTGGTCC-G-CTGGA
639 CTACCACAACCATCGGTCCGGTCT-GA
* * * *
14189516 GCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACAATCGAAATGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-ATCGAAACGAGCGTGCGGGCACTCAG
14189581 CCGACCGGAGAGGCAGAATGTGTAAGCCAGGGATGAACTCGGTCCACCCTCACGTGCTATCGATC
65 CCGACCGGAGAGGCAGAATGTGTAAGCCAGGGATGAACTCGGTCC-CCCTCACGTGCTATCGATC
* * *
14189646 CTGCTGTCACAACCCTCGATCTGATCGTATCATAGATTGGGAATGAACTCTGTATGCCTAAGTCA
129 CTGCTGTCACAACCCTCGGTCTGGTCGTATCATAGATTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
14189711 ACCCATGAAATGAGTGTGCGGGTGCTAAGCCGGCCAGAGAGGCATAATGCACAAGCCGGGGATTG
194 ACCCATGAAACGAGCGTGCGGGAGCTAAGCCGGCC-GAGAGGCATAATGCGCAAGCCGGGGATCG
* * * * * *
14189776 GCCCGGTCCCCCTCTACGTGCTGTCGATCTCGTTGCCACAACCCTCAGTCGA-TTGGGGCTTAGA
258 GCCCGATCCCCCTCTACGGGCTGTCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGA
* ** * *
14189840 CATGGAATGAACTCTCTATGCCTAAGCCAA-CCCACGAAACGGGCGTGTGGGCGCTCAGCCGGCC
323 CATGGAATGAACTCCCTATGCCTAAGCCAATCCCACGAAACGGGCGTACGGACGCTCAGCCGACC
* * * * * *
14189904 GAAGAGGCAAAATGCGCAAGCC-AGGGATTGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTG
388 GAAGAGGCAAAATGCGCAAGCCGA-GGATCGACCCGGT--CCCCTACATGCTGTCGAT-C--CTA
* * * * *
14189968 CTGGTCCTACTGCAGCAACCCTCAGTTC-GATCCGATCTTAGACTGGGAATGAATTCCGTATGCT
447 CT-G------T-C-GCAACCCTCGGTCCAG-TCCAATCTTAGACTAGGAATGAACTCCGTATGCT
* * ** * * * *
14190032 TAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAATGAGCGTGCGGGTGCTCAGCCG
502 TAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCCTACGGGCGCTCAACCG
* * * *
14190097 ACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGAT-CCCC-C-C-CTG-C-AT-GCTGTC
567 ACCGGAAAGGCAGAATGCGCAAGCCGAGGACCAGCCCGATCCCCCTCGCGCTGCCAATCACTGTC
14190155 GGTCCTGCTACCACAACCATCGGTCCGGTCTGA
632 GGTCCTGCTACCACAACCATCGGTCCGGTCTGA
* * * *
14190188 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA--CATCGAAACGAGCGTGCGGGCACTC
*** * * ** * * * * **
14190251 AGCCGGGTGGATAGGCATAATGCT-TAAGCTGGGGATCAGCCCGGTCCCCCTCTACGTGTTGCCG
63 AGCCGACCGGAGAGGCAGAATG-TGTAAGCCAGGGATGAACTCGGTCCCCCTC-ACGTGCTATCG
* * * * *** * *
14190315 GTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCATAGACAT-GGAATGAACTCCGTATGCCAAA
126 ATCCTGCTGTCACAACCCTCGGTCTGGTCGTATCATAGA-TTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
14190379 GCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGGGCGGAGAGGCAGAATGCGCAAGCAGGGG
190 GTCAACCCATGAAACGAGCGTGCGGGAGCTAAGC-CGGCCGAGAGGCATAATGCGCAAGCCGGGG
* ** * * * *
14190444 ATCGGTCCGATCCCCCT-TGTGTGCTGCCGATCCTGCTGCCGCAACCCT
254 ATCGGCCCGATCCCCCTCTACGGGCTGTCGATCCCGCTGCCACAACCCT
14190492 TGGTCCGGTT
Statistics
Matches: 803, Mismatches: 140, Indels: 65
0.80 0.14 0.06
Matches are distributed among these distances:
668 1 0.00
669 65 0.08
670 130 0.16
671 236 0.29
672 212 0.26
673 8 0.01
674 7 0.01
675 2 0.00
676 3 0.00
679 1 0.00
681 2 0.00
682 6 0.01
683 130 0.16
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (664 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACATCGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAGAATGTGTAAGCCAGGGATGAACTCGGTCCCCCTCACGTGCTATCGATCCT
GCTGTCACAACCCTCGGTCTGGTCGTATCATAGATTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTGCGGGAGCTAAGCCGGCCGAGAGGCATAATGCGCAAGCCGGGGATCGGCC
CGATCCCCCTCTACGGGCTGTCGATCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAATCCCACGAAACGGGCGTACGGACGCTCAGCCGACCGAA
GAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCTACATGCTGTCGATCCTACTGTCGCAA
CCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCC
GTATGCCTAAGCCAACCCACAAAATGAGCCTACGGGCGCTCAACCGACCGGAAAGGCAGAATGCG
CAAGCCGAGGACCAGCCCGATCCCCCTCGCGCTGCCAATCACTGTCGGTCCTGCTACCACAACCA
TCGGTCCGGTCTGA
Found at i:14190297 original size:513 final size:500
Alignment explanation
Indices: 14189516--14190634 Score: 1230
Period size: 513 Copynumber: 2.2 Consensus size: 500
14189506 GTCCGCTGGA
* * * * * *
14189516 GCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACAATCGAAATGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCACCCAT-GAAATGAGCGTGCGGGCGCTCAG
* * * * * *
14189581 CCGACCGGAGAGGCAGAATGTGTAAGCCAGGGATGAACTCGGTCCACCCTCACGTGCTATCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACGAACCCGATCCACCCTCAC-TGCTATCGATC
** * * * **
14189646 CTGCTGTCACAACCCTCGATCTGATCGTATCATAGATTGGGAATGAACTCTGTATGCCTAAGTCA
129 CTGCTACCACAACCATCGATCCGATCGTATCATAGACTGGGAATGAACTCCATATGCCTAAGTCA
* * * ** **
14189711 ACCCATGAAATGAGTGTGCGGGTGCTAAGCCGGCCAGAGAGGCATAATGCACAAGCCGGGGATTG
194 ACCCACGAAACGAGCGTGCGGGCACTAAGCCGGCCAGAGAGGCATAATGCACAAGCCGGGGATCA
* * *
14189776 GCCCGGTCCCCCTCTACGTGCTGTCGAT-CTCGTTGCCACAACCCTCAGT-CGATTGGGGCTTAG
259 GCCCGGTCCCCCTCTACGTGCTGCCGATCCT-GCTGCCACAACCCTCAGTCCGATTGGGGCATAG
* *
14189839 ACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAGCCGGC
323 ACATGGAATGAACTC-CGTATGCCAAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGC
* *
14189903 CGAAGAGGCAAAATGCGCAAGCCA-GGGATTGG-CTCGGTCCCCCCTGCGTGCTGTCGATCCTGC
387 CGAAGAGGCAAAATGCGCAAG-CAGGGGATCGGTC-CGAT-CCCCCT---TG-TGT-G---CTGC
* * * *
14189966 TGCTGGTCCTACTGCAGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAATTCCGTAT
441 --C-GATCCTACTGCAGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAC
*
14190029 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA-CCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
14190094 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCG-GCCCGATCCCCCCCTGCA-TGCTGTCGG
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA-CGAACCCGAT-CCACCCT-CACTGCTATCGA
* * *
14190157 TCCTGCTACCACAACCATCGGTCCGGTC-TGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
127 TCCTGCTACCACAACCATCGATCCGATCGT-ATCATAGACTGGGAATGAACTCCATATGCCTAAG
* *** * ** *
14190221 TCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGGGTGGATAGGCATAATGCTTAAGCTGGGGA
191 TCAACCCACGAAACGAGCGTGCGGGCACTAAGCCGGCCAGAGAGGCATAATGCACAAGCCGGGGA
* * * *
14190286 TCAGCCCGGTCCCCCTCTACGTGTTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCAT
256 TCAGCCCGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATTGGGGCAT
* *
14190351 AGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGG
321 AGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGG
* * * *
14190416 GCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGTCCGATCCCCCTTGTGTGCTGCCGATCCTGCT
386 CCGAAGAGGCAAAATGCGCAAGCAGGGGATCGGTCCGATCCCCCTTGTGTGCTGCCGATCCTACT
* ** * ** *
14190481 GCCGCAACCCTTGGTCCGGTTTGATCTTAGATTGGGAATGAACTCCGTAC
451 GCAGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAC
* * * * * *
14190531 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGAGCGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCACCCATGAAATGAGCGTGCGG-GCGCTC
* *
14190595 AGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAA
63 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA-CGAA
14190635 TGGGTGGTAG
Statistics
Matches: 511, Mismatches: 81, Indels: 37
0.81 0.13 0.06
Matches are distributed among these distances:
501 1 0.00
502 93 0.18
503 43 0.08
505 4 0.01
508 1 0.00
509 3 0.01
510 2 0.00
512 1 0.00
513 250 0.49
514 110 0.22
515 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (500 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGACGAACCCGATCCACCCTCACTGCTATCGATCCT
GCTACCACAACCATCGATCCGATCGTATCATAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCACTAAGCCGGCCAGAGAGGCATAATGCACAAGCCGGGGATCAGC
CCGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATTGGGGCATAGACA
TGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGAA
GAGGCAAAATGCGCAAGCAGGGGATCGGTCCGATCCCCCTTGTGTGCTGCCGATCCTACTGCAGC
AACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAC
Found at i:14190319 original size:159 final size:158
Alignment explanation
Indices: 14190030--14190529 Score: 583
Period size: 159 Copynumber: 3.2 Consensus size: 158
14190020 ATTCCGTATG
* * *
14190030 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
14190095 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCCTGCATGCTGTCGGTCC
66 CGGGCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCC
* *
14190160 TGCTACCACAACCATCGGTCCGGTCTGAT
131 TGCTGCCACAACCCTCGGTCCGGT-TGAT
* * * * *
14190189 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * * *
14190253 CCGGGTGGATAGGCATAATGCTTAAGCTGGGGATCAGCCCGGTCCCCCTCTACGTGTTGCCGGTC
65 CCGGGCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTC
**
14190318 CTGCTGCCACAACCCTCGGTCCGGTTGGGG
130 CTGCTGCCACAACCCTCGGTCCGGTT-GAT
* * *
14190348 CATAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14190413 TGGGCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGTCCGATCCCCCT-TGTGTGCTGCCGATCC
66 CGGGCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCC
* *
14190477 TGCTGCCGCAACCCTTGGTCCGGTTTGAT
131 TGCTGCCACAACCCTCGGTCCGG-TTGAT
*
14190506 CTTAGA-TTGGGAATGAACTCCGTA
1 CTTAGACAT-GGAATGAACTCCGTA
14190530 CGCTTAGACT
Statistics
Matches: 280, Mismatches: 56, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 56 0.20
159 222 0.79
160 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGGCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCC
TGCTGCCACAACCCTCGGTCCGGTTGAT
Found at i:14190535 original size:26 final size:26
Alignment explanation
Indices: 14190506--14190555 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14190496 CCGGTTTGAT
*
14190506 CTTAGATTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
14190532 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14190556 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:14191611 original size:26 final size:26
Alignment explanation
Indices: 14191572--14191625 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
14191562 GATTGGATCT
14191572 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14191598 TAGACTAGGG-ATGAACTCCGTATGCC
1 TAGACT-GGGAATGAACTCCGTATGCC
14191624 TA
1 TA
14191626 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:14191795 original size:26 final size:26
Alignment explanation
Indices: 14191766--14191818 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14191756 CTGATCCGAT
14191766 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14191792 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14191818 C
1 C
14191819 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14193027 original size:26 final size:26
Alignment explanation
Indices: 14192989--14193041 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14192979 GGCTCACACT
* *
14192989 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14193015 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14193041 C
1 C
14193042 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14193368 original size:26 final size:26
Alignment explanation
Indices: 14193332--14193384 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14193322 CTAGTTCGAT
14193332 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
14193358 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
14193384 C
1 C
14193385 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:14194094 original size:26 final size:26
Alignment explanation
Indices: 14194056--14194108 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14194046 GGCTCACACT
* *
14194056 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14194082 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14194108 C
1 C
14194109 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14194435 original size:26 final size:26
Alignment explanation
Indices: 14194399--14194451 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14194389 CTAGTTCGAT
14194399 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
14194425 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
14194451 C
1 C
14194452 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:14194721 original size:198 final size:197
Alignment explanation
Indices: 14194396--14194758 Score: 507
Period size: 198 Copynumber: 1.8 Consensus size: 197
14194386 AATCTAGTTC
**
14194396 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA
* * * *
14194461 CCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCGGAGAGACAAAATGTGCAAGCTGGGGATCAA
66 CCCACGAAACGAGCGTGAGGGCGCTAAGCCGACCGGAGAGACAAAATGTGCAAGCTGGGGATCAA
*
14194526 CTCGATCCCTCGCCTACGTGCTGCCGATCATGCTACTGGTCCTACTGCCACAACCCTTGGTCTGG
131 CTCGATCCC-CGCCTACGTGCTACCGATCATGCTACTGGTCCTACTGCCACAACCCTTGGTCTGG
14194591 TCT
195 TCT
* *
14194594 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAAAT-AACTCTGTATGCCTAAG-CT
1 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGAC-TGGAAATGAACTCCGTATGCCTAAGTC-
* * ** *
14194657 AACCCACGAAATGAGCGTGAGGGCGCTAAGTCGACCGGAGAGGTAGAATGTGCAAG-TCGGGGAT
64 AACCCACGAAACGAGCGTGAGGGCGCTAAGCCGACCGGAGAGACAAAATGTGCAAGCT-GGGGAT
* * * *
14194721 CGACTCGATCCCCGCCTGCGTGCTACCGGTCCTGCTAC
128 CAACTCGATCCCCGCCTACGTGCTACCGATCATGCTAC
14194759 CATAACCCTT
Statistics
Matches: 144, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
197 24 0.17
198 115 0.80
199 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.21
Consensus pattern (197 bp):
GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGAGGGCGCTAAGCCGACCGGAGAGACAAAATGTGCAAGCTGGGGATCAA
CTCGATCCCCGCCTACGTGCTACCGATCATGCTACTGGTCCTACTGCCACAACCCTTGGTCTGGT
CT
Found at i:14194932 original size:159 final size:157
Alignment explanation
Indices: 14194622--14195059 Score: 432
Period size: 159 Copynumber: 2.8 Consensus size: 157
14194612 AACTCCATAT
* * *
14194622 GCTTAGACATGGAAAT-AACTCTGTATGCCTAAGCTAACCCACGAAATGA-GCGTGA-GGGCGCT
1 GCTTAGACATGGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGGC-T-ACGGGTGCT
* * * * *
14194684 AAGTCGACCGGAGAGGTAGAATGTGCAAGTCGGGGATCGACTCGATCCCCGCCTGCGTGCTACCG
63 AAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCC-CCTGCGTGCTACCG
* * * * *
14194749 GTCCTGCTACCATAACCCTTGGTCCGGTCT-GAT
127 GTCCCGCTAACAT-ACCCTCGGTCCAG-CTAG-G
*
14194782 G-TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGCT-CGGGTGCTG
1 GCTTAGACATGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAG-GCTACGGGTGCTA
* * * * * *
14194844 AGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGTTGCTGG
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCC-CTGCGTGCTACCGG
14194909 TCCCGCTGAGACAT-CCCTCGGTCCAGCTAGG
128 TCCCGCT-A-ACATACCCTCGGTCCAGCTAGG
* *
14194940 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GGCGTAC-GGTGCTC
1 GCTTAGACATGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGGC-TACGGGTGCTA
* ** *
14195002 AGCTGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGA-TCGGTCCCCCCTGCGTGCT
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCT
14195060 GCCGATCCTG
Statistics
Matches: 234, Mismatches: 31, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
156 8 0.03
157 10 0.04
158 52 0.22
159 154 0.66
160 5 0.02
161 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGGCTACGGGTGCTAAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTACCGGTCC
CGCTAACATACCCTCGGTCCAGCTAGG
Found at i:14195859 original size:26 final size:26
Alignment explanation
Indices: 14195821--14195873 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14195811 GGCTCACACT
* *
14195821 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14195847 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14195873 C
1 C
14195874 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14196200 original size:26 final size:26
Alignment explanation
Indices: 14196164--14196216 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14196154 CTAGTTCGAT
14196164 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
14196190 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
14196216 C
1 C
14196217 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:14196486 original size:198 final size:197
Alignment explanation
Indices: 14196161--14196523 Score: 507
Period size: 198 Copynumber: 1.8 Consensus size: 197
14196151 AATCTAGTTC
**
14196161 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA
* * * *
14196226 CCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCGGAGAGACAAAATGTGCAAGCTGGGGATCAA
66 CCCACGAAACGAGCGTGAGGGCGCTAAGCCGACCGGAGAGACAAAATGTGCAAGCTGGGGATCAA
*
14196291 CTCGATCCCTCGCCTACGTGCTGCCGATCATGCTACTGGTCCTACTGCCACAACCCTTGGTCTGG
131 CTCGATCCC-CGCCTACGTGCTACCGATCATGCTACTGGTCCTACTGCCACAACCCTTGGTCTGG
14196356 TCT
195 TCT
* *
14196359 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAAAT-AACTCTGTATGCCTAAG-CT
1 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGAC-TGGAAATGAACTCCGTATGCCTAAGTC-
* * ** *
14196422 AACCCACGAAATGAGCGTGAGGGCGCTAAGTCGACCGGAGAGGTAGAATGTGCAAG-TCGGGGAT
64 AACCCACGAAACGAGCGTGAGGGCGCTAAGCCGACCGGAGAGACAAAATGTGCAAGCT-GGGGAT
* * * *
14196486 CGACTCGATCCCCGCCTGCGTGCTACCGGTCCTGCTAC
128 CAACTCGATCCCCGCCTACGTGCTACCGATCATGCTAC
14196524 CATAACCCTT
Statistics
Matches: 144, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
197 24 0.17
198 115 0.80
199 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.21
Consensus pattern (197 bp):
GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGAGGGCGCTAAGCCGACCGGAGAGACAAAATGTGCAAGCTGGGGATCAA
CTCGATCCCCGCCTACGTGCTACCGATCATGCTACTGGTCCTACTGCCACAACCCTTGGTCTGGT
CT
Found at i:14196804 original size:171 final size:157
Alignment explanation
Indices: 14196690--14197061 Score: 408
Period size: 159 Copynumber: 2.3 Consensus size: 157
14196680 TGCCGATCCT
** **
14196690 GCTGCCACAACCCTCGATTTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAAC
** * *
14196755 CCACGAAACCAGCGTGCGGGTGCCCAGTAGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGC
65 CCACGAAATGAGCGTGCGGGTGCTCAGTAG-CCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGC
14196820 CCGGTCCCCCTCTACGTGCTACCGGTCCC
129 CCGGTCCCCCTCTACGTGCTACCGGTCCC
* *
14196849 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACTTGAAATGAACTCAC-TATGCCTAAGCCAA
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGAC-TGGAATGAACTC-CGTATGCCTAAGCCAA
* * * *
14196913 CCCACGAAATGGGCGTGCGGGCT-CTCAGTCAGCTGGAGAGGCAGAATGTGCAAGTCGAGGATCA
64 CCCACGAAATGAGCGTGCGGG-TGCTCAGT-AGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCA
* * * **
14196977 GCCCGGTCCCTC-CTACGTGCTTCCGATCTT
127 GCCCGGTCCCCCTCTACGTGCTACCGGTCCC
* * * * ** * **
14197007 GTTGTCGCAACCCTCGATCTGGTTAGATCTTAGACTGGGAATGAACTCCGTATGC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACT-GGAATGAACTCCGTATGC
14197062 TTAGACTGGG
Statistics
Matches: 177, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.01
158 54 0.31
159 117 0.66
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAATGAGCGTGCGGGTGCTCAGTAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCC
GGTCCCCCTCTACGTGCTACCGGTCCC
Found at i:14196979 original size:159 final size:158
Alignment explanation
Indices: 14196690--14196997 Score: 417
Period size: 159 Copynumber: 1.9 Consensus size: 158
14196680 TGCCGATCCT
** ** *
14196690 GCTGCCACAACCCTCGATTTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
14196755 CCACGAAACCAGCGTGCGGGTGCCCAGTAGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGC
66 CCACGAAACCAGCGTGCGGGTGCCCAGTAGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGC
14196820 CCGGTCCCCCTCTACGTGCTACCGGTCCC
131 CCGGTCCCCC-CTACGTGCTACCGGTCCC
* *
14196849 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACTTGAAATGAACTCAC-TATGCCTAAGCCAA
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTC-CGTATGCCTAAGCCAA
*** * * *
14196913 CCCACGAAATGGGCGTGCGGGCT-CTCAGTCAG-CTGGAGAGGCAGAATGTGCAAGTC-GAGGAT
65 CCCACGAAACCAGCGTGCGGG-TGCCCAGT-AGACCGGAGAGGCAGAATGCGCAAGTCAG-GGAT
*
14196975 CAGCCCGGTCCCTCCTACGTGCT
127 CAGCCCGGTCCCCCCTACGTGCT
14196998 TCCGATCTTG
Statistics
Matches: 131, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
158 10 0.08
159 117 0.89
160 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACCAGCGTGCGGGTGCCCAGTAGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGC
CCGGTCCCCCCTACGTGCTACCGGTCCC
Found at i:14197086 original size:26 final size:26
Alignment explanation
Indices: 14197035--14197087 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14197025 CTGGTTAGAT
*
14197035 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14197061 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14197087 C
1 C
14197088 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14197982 original size:26 final size:26
Alignment explanation
Indices: 14197953--14198005 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14197943 CCGATTCGAT
*
14197953 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACGT-GGAATAAACTCCGTATG
*
14197979 CTTAGACGTGGAATAAACTCTGTATG
1 CTTAGACGTGGAATAAACTCCGTATG
14198005 C
1 C
14198006 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACGTGGAATAAACTCCGTATG
Found at i:14199487 original size:26 final size:26
Alignment explanation
Indices: 14199451--14199500 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14199441 TCGATTCGAT
14199451 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14199477 CTTAGGCTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14199501 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14199686 original size:26 final size:26
Alignment explanation
Indices: 14199648--14199700 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14199638 TCGGTCAGAT
*
14199648 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14199674 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14199700 C
1 C
14199701 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14200175 original size:158 final size:158
Alignment explanation
Indices: 14199674--14200179 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 158
14199664 ACTCTGTATG
* * *
14199674 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGATTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCGGGCGCTCAGC
* * * * * * * * **
14199739 CAGCTGGAAAGGTAGAATGCGCAAGTCGGGGACCGACCCAATCCCCCATGTGTGCTGTTGATCCT
66 CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCCT
* * * *
14199804 ACTGTCGCAACCTTTGGTCCAGTCCGAT
131 ACTGCCACAACCTTTGGTCCGGTTCGAT
* * * * ** *** * * *
14199832 CTTAGAC-TGGGATTGAACTTCGTATACCTAAGTCAATGCATGAAGCAAGTGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCGGGCGCTCAG
* * * ** * * * *
14199896 CCGTCCGGAGAGGCATAATGCGCAAGCCAAGGATTGGCCCGGTCCCACTCTGTGTGCTGCCGGTC
65 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCCTGTGTGCTGCCGATC
** * * * **
14199961 CCGCTGCCAAAACCTTTGGTCCGGCTAGGG
129 CTACTGCCACAACCTTTGGTCCGGTTCGAT
* * * *
14199991 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGCCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCGGGCGCTCAGC
* * **
14200056 CGGCCGGAGAGGTAGAATGCGCAACCCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCCT
66 CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCCT
* * *
14200121 ACTACCACAACCCTCGGTCCGGTTCGAT
131 ACTGCCACAACCTTTGGTCCGGTTCGAT
*
14200149 CTTAGAC-TGGGAATGAACTCTGTATG-CTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG
14200180 ACAGGAGATG
Statistics
Matches: 259, Mismatches: 85, Indels: 9
0.73 0.24 0.03
Matches are distributed among these distances:
157 7 0.03
158 135 0.52
159 116 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCGGGCGCTCAGC
CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCCT
ACTGCCACAACCTTTGGTCCGGTTCGAT
Found at i:14200540 original size:26 final size:26
Alignment explanation
Indices: 14200504--14200554 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14200494 CTGGTCTGAT
*
14200504 CTTAGATTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
* *
14200530 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14200555 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:14200607 original size:355 final size:355
Alignment explanation
Indices: 14199951--14200628 Score: 919
Period size: 355 Copynumber: 1.9 Consensus size: 355
14199941 CACTCTGTGT
* *
14199951 GCTGCCGGTCCCGCTGCCAAAACCTTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGGTCCCGCTGCCAAAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * *
14200016 GCCTAAGCCAACCCATGAAATGGGCGTGCGGCCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAC
66 ACCTAAGCCAACCCACGAAACGGGCGTACGGCCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAC
** *
14200081 CCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCCTACTACCACAACCCTCGGTCCGGTTC
131 CAAGGGATCGGCTCGATCCCCCATACGTGCTGCCGATCCTACTACCACAACCCTCGGTCCGGTTC
* *
14200146 GATCTTAGACTGGGAATGAACTCTGTATGCTAAGACAGGAGATGAACTCTGTATACCTAAGTCAA
196 GATCTTAGACTGGGAATGAACTCCGTATCCTAAGACAGGAGATGAACTCTGTATACCTAAGTCAA
* * * * * ** *
14200211 CCCACAAAACGAGCGTGCGTGCGCTCAGCTGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCAC
261 CCCACAAAACGAGCATGCATACGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAC
14200276 TCCGATCCCCTTCTGCGTGCTGTCGATCCA
326 TCCGATCCCCTTCTGCGTGCTGTCGATCCA
** * *
14200306 GCTGCCGGTCTTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGGTCCCGCTGCCAAAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* ** *
14200371 ACCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCAGTTGGAGAGGCAGAATGCGCAAG
66 ACCTAAGCCAACCCACGAAACGGGCGTACGGCCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAC
* * * * ** *
14200436 CAAGGGATCGGC-CTGGTCCCCCATACGTGCTGCTGATCCTGCTATCGTAACCCTCGGTCTGG-T
131 CAAGGGATCGGCTC-GATCCCCCATACGTGCTGCCGATCCTACTACCACAACCCTCGGTCCGGTT
* * * * *
14200499 CTGATCTTAGATTGGGAATGAACTCCGTATCCTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
195 C-GATCTTAGACTGGGAATGAACTCCGTATCCTAAGACAGGAGATGAACTCTGTATACCTAAGTC
** * *
14200564 AACCCATGAAACGAGCATGCATACGCTCAGCCGACCAGAGAGGCAGGATGCGTAAGCCGGGGATC
259 AACCCACAAAACGAGCATGCATACGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATC
14200629 GAACAGGTGG
Statistics
Matches: 276, Mismatches: 45, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
354 3 0.01
355 273 0.99
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (355 bp):
GCTGCCGGTCCCGCTGCCAAAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
ACCTAAGCCAACCCACGAAACGGGCGTACGGCCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAC
CAAGGGATCGGCTCGATCCCCCATACGTGCTGCCGATCCTACTACCACAACCCTCGGTCCGGTTC
GATCTTAGACTGGGAATGAACTCCGTATCCTAAGACAGGAGATGAACTCTGTATACCTAAGTCAA
CCCACAAAACGAGCATGCATACGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAC
TCCGATCCCCTTCTGCGTGCTGTCGATCCA
Found at i:14201815 original size:26 final size:26
Alignment explanation
Indices: 14201777--14201826 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14201767 CCGGTCCAAT
*
14201777 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
14201803 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
14201827 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:14202306 original size:26 final size:26
Alignment explanation
Indices: 14202277--14202329 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14202267 CCAGTCTGAT
*
14202277 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14202303 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14202329 C
1 C
14202330 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14202673 original size:26 final size:26
Alignment explanation
Indices: 14202644--14202696 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14202634 CTGATCCGAT
14202644 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
14202670 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
14202696 C
1 C
14202697 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:14202869 original size:367 final size:368
Alignment explanation
Indices: 14202118--14202986 Score: 937
Period size: 367 Copynumber: 2.4 Consensus size: 368
14202108 TTCGGCTATG
** **
14202118 GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCTGCGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * * ** * ** *
14202183 CCGGTTGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCTTCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCTTGCTACCGATCC
* * * * * *
14202248 TGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGATTGG
131 TGCTCTCACAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGA
*
14202313 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCATTCAGCCGACCAGAGA
196 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGACCAGAGA
* * * * * * * ** **
14202378 GTTCGGTCGGAGAGGCATAATGTGCATTTCGGGGACCAGCCCGATCCCCCTCTGTGTGCTGTGGA
261 GCTCAGTCAGAGAGGCATAATGCGCATATCGGGGACCAACCCGATCACCCTCTACGTGCTGTCAA
* ** *
14202443 TCCCGTTACCGGTGCTGCTGCCACAACCCTCGGTTTAATTGGA
326 TCCCGTTACCGGTCCTGCTGCCACAACCCTCGGTCCAACTGGA
** * * * *
14202486 GCTTAGACAT-GAATGAACTCCCTATGCGAAAGCCAACCCATGAAACGGGCATACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * * * *
14202550 CCGGTCGAAGAGGCAGAATACATAAGCCGAGGATCGGTCTGGTCCCCCCTGCTTGCTACCGATCC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCTTGCTACCGATCC
* * * *
14202615 TGCTACT-ACAACCTTTGGT-CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
131 TGCT-CTCACAACCCTCGGTCCAG-TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * ** *
14202678 GAGGATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGTGTGTGGGTGCTCAGCCGACCGGA
194 GAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGACCAGA
* * *
14202743 GAGGCT-AGTCAGAGAGGCATAATGCGTATATCGGGGATCAACCCGATCACCCTTTACGTGCTGT
259 GA-GCTCAGTCAGAGAGGCATAATGCGCATATCGGGGACCAACCCGATCACCCTCTACGTGCTGT
* **
14202807 CAATCCCGTTGCCGGTCCTG-T-CACTACAA-CCTCGGTCCGGCTGGTA
323 CAATCCCGTTACCGGTCCTGCTGC-C-ACAACCCTCGGTCCAACTGG-A
* * * * *
14202853 -CTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
** * * * *
14202917 TTGATCGGAGAGGTAGAATGCGTAAGCTGAGGATCGACCCGGTCCCCACCTG-TATGCTACCGAT
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCC-CCTGCT-TGCTACCGAT
14202981 CCTGCT
129 CCTGCT
14202987 GCTGGTCCTA
Statistics
Matches: 407, Mismatches: 85, Indels: 18
0.80 0.17 0.04
Matches are distributed among these distances:
365 1 0.00
366 23 0.06
367 350 0.86
368 33 0.08
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (368 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCTTGCTACCGATCC
TGCTCTCACAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGA
GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGACCAGAGA
GCTCAGTCAGAGAGGCATAATGCGCATATCGGGGACCAACCCGATCACCCTCTACGTGCTGTCAA
TCCCGTTACCGGTCCTGCTGCCACAACCCTCGGTCCAACTGGA
Found at i:14203515 original size:26 final size:26
Alignment explanation
Indices: 14203486--14203538 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14203476 CCGATCCGAT
14203486 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
14203512 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
14203538 C
1 C
14203539 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:14204236 original size:26 final size:26
Alignment explanation
Indices: 14204198--14204250 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14204188 GCCTTAAAAT
14204198 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14204224 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14204250 C
1 C
14204251 CTAACCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14204749 original size:26 final size:26
Alignment explanation
Indices: 14204700--14204750 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14204690 GGTCCGATCA
* * *
14204700 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATAAACTCCATATGCT
*
14204726 TAGACTGGGGATAAACTCCATATGC
1 TAGACTGGGAATAAACTCCATATGC
14204751 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCATATGCT
Found at i:14205448 original size:26 final size:26
Alignment explanation
Indices: 14205419--14205471 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14205409 CCGGTCTGAT
14205419 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
*
14205445 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14205471 C
1 C
14205472 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14205521 original size:355 final size:352
Alignment explanation
Indices: 14204677--14205712 Score: 1079
Period size: 355 Copynumber: 2.9 Consensus size: 352
14204667 CTTGCTGTCG
* * * *
14204677 CAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATAAA
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATAAA
** * * * * *
14204741 CTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAACCGACCGGAGAGGCATAA
65 CTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAA
* * * * * *
14204806 TGCACAAACT-GAGGATCAGCCCAGTCCCTCTCTGTGTGCTACCGATCCCGCTACCGGTCCTGCT
130 TGCGCAAGCTAG-GGAT-GGCCCGGTCCC-CCCTGCGTGCT----AT--CG--A----TCCTGCT
* * ** *
14204870 GCCACAACCCTCGGTTCGATTGGGGCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCC
180 GCCACAACCCTCAGTTCGATTCGATCTTAGAC-TGGAATGAACTCT-GTATGCCTAAGACAACCC
* * * *
14204934 AT-AAAATGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGAC
243 -TCAAAACGAGCATGCGGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGTC-GGGGATCGGC
* ** * * *
14204997 CTGGT-CCCCCTACGTGTTGTCGATCCTACTGCTAGTCCTGCTGCTA
306 CTGATCCCCCCTACGTACTGTCGATCCTACTCCTAGTCCTACTGCCA
** *
14205043 CAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGCCATGGAATAAAC
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAAC
* * * * * ** *
14205108 T-TCGTATGCCTAAGCCAAGCAATGAAACGAGCGTGTGGGTGCTCAACCGGTTGGAGAGGTAGAA
66 TCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAA
14205172 TGCGCAAGCTAGGGACTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAG
130 TGCGCAAGCTAGGGA-TGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAG
* *
14205237 TTCGATCCGATCTTAGACTGGAAATGAACTCTGTATGCCTAAGACAACCCTCGAAACGAGCATGC
194 TTCGATTCGATCTTAGACTGG-AATGAACTCTGTATGCCTAAGACAACCCTCAAAACGAGCATGC
* * * *
14205302 GGGTGCTCAGTCGGTCGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCTCCCCTGCGT
258 GGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCC-CCCCTACGT
* * * * *
14205367 ACTGTCGATCTTGC-CCTCGGTCCTATTGCCG
322 ACTGTCGATCCTACTCCT-AGTCCTACTGCCA
* * * *
14205398 TAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAAC
*
14205463 TCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAAT
66 TCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAAT
* * *
14205528 GCGCAAG-TCAGGGATTGGCCCGATCCCCCCTGCGTACTATCGATCCTG-TAGCCGCAACCCTCA
131 GCGCAAGCT-AGGGA-TGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCT-GCCACAACCCTCA
* * * *
14205591 GTTCGATTTGATCTT-GACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATG
193 GTTCGATTCGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGACAACCCTCAAAACGAGCATG
* * * * *
14205655 TGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGAT-GGGGATCGGCCCGATCCCC
257 CGGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAG-TCGGGGATCGGCCTGATCCCC
14205713 TTCTGTGTGC
Statistics
Matches: 566, Mismatches: 88, Indels: 45
0.81 0.13 0.06
Matches are distributed among these distances:
352 4 0.01
353 116 0.20
354 95 0.17
355 209 0.37
356 1 0.00
357 1 0.00
359 2 0.00
361 2 0.00
365 9 0.02
366 124 0.22
367 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (352 bp):
CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAAC
TCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAAT
GCGCAAGCTAGGGATGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAGTT
CGATTCGATCTTAGACTGGAATGAACTCTGTATGCCTAAGACAACCCTCAAAACGAGCATGCGGG
CGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTACGTACTG
TCGATCCTACTCCTAGTCCTACTGCCA
Found at i:14205837 original size:159 final size:158
Alignment explanation
Indices: 14205444--14205945 Score: 491
Period size: 157 Copynumber: 3.2 Consensus size: 158
14205434 AACTCCGTAT
*
14205444 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * *
14205509 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGATCCCCCCTGCGTACTATCGATCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTACTACCGATCC
* * * *
14205574 TGTAGCCGCAACCCTCAGTTCGATTTGA
131 CGTAGCCACAACCCTCAGTCCGATCTGA
* * * * * *
14205602 TCTT-GAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
** * * * * * *
14205665 GCCGATCGAAGAGGCATAATGCGCAAGAT-GGGGATCGGCCCGATCCCCTTCTGTGTGCTACCGA
65 GCCGGCCGGAGAGGCAAAATGCGCAAG-TCAGGGATCGGCCCGATCCCC-CCTGCGTACTACCGA
14205729 TCCCGCTA-CCACAACCCTCAGTCCGA-CTGA
128 TCCCG-TAGCCACAACCCTCAGTCCGATCTGA
** * *
14205759 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC-CTGAAACGGGCATGCGAGCGCTC
1 -GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC-GAAACGAGCATGCGGGCGCTC
* * * * * * **
14205823 AACCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTTG-TCCCCCCTGCTTGCTGTCGA
64 AGCCGGCCGGAGAGGCAAAATGCGCAAGTCAGGGATCGGCC-CGATCCCCCCTGCGTACTACCGA
* * * * *
14205887 TCCTGCT-GCCACAACGCTCGGTCCAATCCGA
128 TCCCG-TAGCCACAACCCTCAGTCCGATCTGA
* *
14205918 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
14205946 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 95 0.34
158 94 0.34
159 87 0.31
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTACTACCGATCC
CGTAGCCACAACCCTCAGTCCGATCTGA
Found at i:14205998 original size:27 final size:26
Alignment explanation
Indices: 14205919--14205990 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
14205909 CCAATCCGAT
*
14205919 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14205945 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14205971 CTTAGACTGGGGGATGAACT
1 CTTAGACT-GGGAATGAACT
14205991 TTGTATGCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
26 33 0.77
27 10 0.23
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14206668 original size:26 final size:26
Alignment explanation
Indices: 14206639--14206691 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14206629 CTGATTCGAT
14206639 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGGATGAACTTCGTATG
14206665 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGGATGAACTTCGTATG
14206691 C
1 C
14206692 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.13, G:0.30, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGGATGAACTTCGTATG
Found at i:14207399 original size:159 final size:156
Alignment explanation
Indices: 14207047--14207546 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 156
14207037 TTTGTATGCT
* * *
14207047 TAGACATGGAATGCACTTCGTATGCCTAAGCCAACCCACGAAATGAGTC-TGCGGGCGCTCAATC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGCGCTCACT-
* * * *
14207111 GGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCCTACGTGCTATCGATCTTG
64 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGA-TCCCCCCTGCGTGCTATCGATCTCG
* * * * * * *
14207176 TTGCCAGAACCCTCGGTGCGGTCTGATCT
128 CTACCACAACCCTCGATCCGGTCTGAGCG
* * * *
14207205 TAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCT
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA-CT
* * *
14207269 GGCCGGAGGGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTATCGATCTC
64 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGATCCCCC-CTGCGTGCTATCGATCTC
*
14207334 GCTACCACAACCCTCGATCCGG-CTGGGGCG
127 GCTACCACAACCCTCGATCCGGTCT-GAGCG
* * *
14207364 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC-ACTG
* * * * *
14207429 GTCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGATCCCCCCTGTGTGCTGTCGATC-CTA
65 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATCCCCCCTGCGTGCTATCGATCTC-G
* * * ** * *
14207493 CTGCCACAACCCTTGGTCCGGTCCAATCT
128 CTACCACAACCCTCGATCCGGTCTGAGCG
*
14207522 TAGAC-TAGGAATGAACTCCATATGC
1 TAGACAT-GGAATGAACTCCGTATGC
14207547 TTAGACTGGG
Statistics
Matches: 284, Mismatches: 46, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.01
158 146 0.51
159 131 0.46
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCACTGG
TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCCTGCGTGCTATCGATCTCGCTA
CCACAACCCTCGATCCGGTCTGAGCG
Found at i:14207549 original size:26 final size:26
Alignment explanation
Indices: 14207520--14207572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14207510 CCGGTCCAAT
14207520 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14207546 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14207572 C
1 C
14207573 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14214179 original size:26 final size:26
Alignment explanation
Indices: 14214141--14214193 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14214131 GGCTCAAAAT
*
14214141 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
14214167 CTTAGACAT-GGAAGGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCGTATG
14214193 C
1 C
14214194 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:14215499 original size:26 final size:26
Alignment explanation
Indices: 14215463--14215518 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14215453 CTAGTCCGAT
*
14215463 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTACGTATG
14215489 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGGATGAACTACGTATG
14215515 CTTA
1 CTTA
14215519 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTACGTATG
Found at i:14215808 original size:12 final size:12
Alignment explanation
Indices: 14215793--14215817 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14215783 GATCCTGCTG
14215793 GGTCCTGCTACC
1 GGTCCTGCTACC
14215805 GGTCCTGCTACC
1 GGTCCTGCTACC
14215817 G
1 G
14215818 CAACCCTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.40, G:0.28, T:0.24
Consensus pattern (12 bp):
GGTCCTGCTACC
Found at i:14216782 original size:26 final size:26
Alignment explanation
Indices: 14216744--14216796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14216734 GGCTCAAAAT
*
14216744 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14216770 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14216796 C
1 C
14216797 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14217103 original size:159 final size:157
Alignment explanation
Indices: 14216769--14217184 Score: 485
Period size: 159 Copynumber: 2.6 Consensus size: 157
14216759 AAGTCCGTAT
* * * * **
14216769 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* * * * * *
14216834 TCGGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCGGCCCGACCCCCCTGCGTGCTGTCGGTTAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGACCCCCCTACGTGCTGTCGGTCAT
* * * * *
14216899 GCTGCCGCAACCCTCGGTCTGGTTCGA
131 ACTGCCACAACCCTCAGTCTGGCTAGA
* * * *
14216926 TCTTAGAC-TGGGAATGAACTCCGCATGCATAAGTCAACCCACGAAACGAGCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCA
** * * * *
14216990 GCCAATCGAAGAGGCATATTGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGA-CCCCC-CTACGTGCTGTCGGT
* *
14217055 CCTACTGCCACAACCCTCAGTCTGGCTAGG
128 CATACTGCCACAACCCTCAGTCTGGCTAGA
* * *
14217085 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCA
*
14217149 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATC
14217185 GACCCAATAC
Statistics
Matches: 211, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
156 1 0.00
157 85 0.40
158 6 0.03
159 118 0.56
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGACCCCCCTACGTGCTGTCGGTCAT
ACTGCCACAACCCTCAGTCTGGCTAGA
Found at i:14217663 original size:26 final size:26
Alignment explanation
Indices: 14217625--14217677 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14217615 CTGGTCTGAT
14217625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14217651 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14217677 C
1 C
14217678 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14218011 original size:159 final size:158
Alignment explanation
Indices: 14217650--14218072 Score: 399
Period size: 159 Copynumber: 2.7 Consensus size: 158
14217640 AACTCCGTAT
* * ** *
14217650 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATAAAACGAGCGGTGGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGCGGGCGCTCAGC
* * * * **
14217715 TGATCAGAGAGGTAGAATGCGCAAGTCGGGGATCGCCCCAGTGCCCCCCAACGTGCTGTCAATCC
66 CGATCAGAGAGGCAGAATGCGCAAGTCAGGGATCGCCCCAGTGCCCCCCAACATGCTACCAATCC
* *
14217780 TGCTGCCGCAACCCTCGGTTCGGTCTGA
131 CGCTGCCACAACCCTCGGTTCGGTCTGA
* * * * *
14217808 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGCGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-GCGGGCGCTCA
* * * * * **
14217872 GCCGATCGGAGAGGCATAATGCGTAAGTCAGTGATCGGCCC-GAT-CCCCCTCTGCATGCTACCA
64 GCCGATCAGAGAGGCAGAATGCGCAAGTCAGGGATCGCCCCAG-TGCCCCC-CAACATGCTACCA
* *
14217935 GTCCCGCTGCCACAACCCTCGG-TCTGGT-TGGG
127 ATCCCGCTGCCACAACCCTCGGTTC-GGTCT-GA
* * * **
14217967 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAACGGGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-GCGGGCGCTCAG
* * * *
14218032 CCGA-CCGAAGAGGTAGAATGCGCAAGCCGGGGATCGACCCC
65 CCGATCAG-AGAGGCAGAATGCGCAAGTCAGGGATCG-CCCC
14218073 GTCCCTCTTA
Statistics
Matches: 210, Mismatches: 46, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 53 0.25
159 152 0.72
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGCGGGCGCTCAGC
CGATCAGAGAGGCAGAATGCGCAAGTCAGGGATCGCCCCAGTGCCCCCCAACATGCTACCAATCC
CGCTGCCACAACCCTCGGTTCGGTCTGA
Found at i:14218897 original size:26 final size:26
Alignment explanation
Indices: 14218846--14218898 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14218836 CGCTCAAAAT
* *
14218846 CTTAGACTGGCAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
14218872 CTTAGACAT-GCAATGAACTCCATATG
1 CTTAGAC-TGGCAATGAACTCCATATG
14218898 C
1 C
14218899 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:14219226 original size:159 final size:158
Alignment explanation
Indices: 14218871--14219365 Score: 459
Period size: 159 Copynumber: 3.1 Consensus size: 158
14218861 AACTTCGTAT
* * * *
14218871 GCTTAGACATGCAATGAACTCCATATGCCTAAGCTAACCCAC-AAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAA-GAGCGTGCGGGCGCTGA
* ** * **
14218935 GCCAATCGGAGAGGTAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTTGATC
65 GCCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCAGATC
*
14219000 CTACTGCCACAACCCTCAGTCCAGTCCGA
130 CCACTGCCACAACCCTCAGTCCAGTCCGA
* * ** * *
14219029 TCTTAGAC-TAGGAATGAACTCCGTATGTATAAGTCAACCCACGAAAAGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTGA
* * * *
14219093 GCCGGTCGGAGAGGTATAATGTGCAAGCCGGGGATC-GACCCAGTCCTCCTCTGCGTGTTGCCAG
65 GCCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATCAG-CCCAGTCC-CCCCTGCGTGCTG-CAG
* * ** *
14219157 -TCCCGCTGCCACAACCCTC-GATCCGGTTGGG
127 ATCCCACTGCCACAACCCTCAG-TCCAGTCCGA
* * * **
14219188 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAAGCGCTCG-
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCT-GA
* ** * * *
14219252 GCTGATCGGAGAGGTAGAATGTGCAAGCCAAGGATTAGCCCAGTCCCCCCTGCATGCTTC-GAT-
65 GCCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCAGATC
* ** * *
14219315 CCAGCTACCGTAACCCTCGGTCCAGTCTGA
130 CCA-CTGCCACAACCCTCAGTCCAGTCCGA
*
14219345 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
14219366 TGTATGCTTA
Statistics
Matches: 269, Mismatches: 55, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
156 4 0.01
157 39 0.14
158 96 0.36
159 126 0.47
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTGAG
CCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCAGATCC
CACTGCCACAACCCTCAGTCCAGTCCGA
Found at i:14219375 original size:26 final size:26
Alignment explanation
Indices: 14219346--14219398 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14219336 CCAGTCTGAT
* *
14219346 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
14219372 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14219398 C
1 C
14219399 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14219720 original size:171 final size:171
Alignment explanation
Indices: 14219371--14219738 Score: 386
Period size: 171 Copynumber: 2.2 Consensus size: 171
14219361 AACTCTGTAT
* * * *
14219371 GCTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCCTACAAGCTCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCCTACAAGCTCTCAA
* * * *
14219436 CCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTTTACATGCTGTCGATC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATC
* * * *
14219501 CCGCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGG
131 CCACTACCGATCCTACTGCCACAACCCTCGGTCCGACTCGA
* * * * *
14219542 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGC-TGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCCTACAAGCT-CTC
* * *
14219605 AACCAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATC-GACCCGGTCCCACC-CTGCGTGCTGTC
64 AACCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGGTCCC-CCTCTACATGCTGTC
* * * * **** *
14219668 GATCCTACTGCTGGTCCTACTGTTGTAACCCTTGGTCCGA-TCCGA
127 GATCCCACTACCGATCCTACTGCCACAACCCTCGGTCCGACT-CGA
*
14219713 TCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
14219739 ACTTCGACAT
Statistics
Matches: 160, Mismatches: 31, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
170 5 0.03
171 152 0.95
172 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCCTACAAGCTCTCAA
CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATC
CCACTACCGATCCTACTGCCACAACCCTCGGTCCGACTCGA
Found at i:14221155 original size:26 final size:26
Alignment explanation
Indices: 14221126--14221178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14221116 CTGATCCAAT
14221126 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14221152 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14221178 C
1 C
14221179 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14221580 original size:26 final size:26
Alignment explanation
Indices: 14221544--14221596 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14221534 CTGATCTGAT
14221544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14221570 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14221596 C
1 C
14221597 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14222477 original size:26 final size:26
Alignment explanation
Indices: 14222426--14222478 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14222416 CCGATCCGAT
* **
14222426 CTTAGACTGGGAATGAAGTTTGTATG
1 CTTAGACTGGGAATGAACTTCATATG
14222452 CTTAGACTGAGG-ATGAACTTCATATG
1 CTTAGACTG-GGAATGAACTTCATATG
14222478 C
1 C
14222479 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:14225486 original size:26 final size:26
Alignment explanation
Indices: 14225457--14225509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14225447 CTGGTCTAAT
14225457 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14225483 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14225509 C
1 C
14225510 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14225704 original size:26 final size:26
Alignment explanation
Indices: 14225667--14225717 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14225657 TGGTCCAATC
* *
14225667 TTAGACTAGGAATTAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCCTATGG
14225693 TTAGAC-ATGGAATGAACTCCCTATG
1 TTAGACTA-GGAATGAACTCCCTATG
14225718 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCCTATGG
Found at i:14225838 original size:21 final size:21
Alignment explanation
Indices: 14225812--14225854 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14225802 CTGCGTGCTG
14225812 TCGATCCTACTGCCACAACCC
1 TCGATCCTACTGCCACAACCC
14225833 TCGATCCTACTGCCACAACCC
1 TCGATCCTACTGCCACAACCC
14225854 T
1 T
14225855 TCGTATGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.47, G:0.09, T:0.21
Consensus pattern (21 bp):
TCGATCCTACTGCCACAACCC
Found at i:14226102 original size:27 final size:27
Alignment explanation
Indices: 14226062--14226121 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
14226052 AGACGACCCG
** * *
14226062 TTTTTTATTTTTCACGATCTTTGAAAC
1 TTTTTTATGGTTCAAGATCTTTGAAAA
* *
14226089 TTTTTTATGGTTCAAGATTTTTTAAAA
1 TTTTTTATGGTTCAAGATCTTTGAAAA
14226116 TTTTTT
1 TTTTTT
14226122 TAGAAAGAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.60
Consensus pattern (27 bp):
TTTTTTATGGTTCAAGATCTTTGAAAA
Found at i:14226976 original size:355 final size:355
Alignment explanation
Indices: 14226311--14226976 Score: 772
Period size: 355 Copynumber: 1.9 Consensus size: 355
14226301 TTTAAGGCGG
* * * * *
14226311 TGATCTTAGATTGGGAATGAACTTAGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCA
1 TGATCTTAGACTGGGAATGAACTCAGTATGCTTACACAAGGAATAAACTCCGTATGACTAAGCCA
* * * * ** * * * *
14226376 ACCCATGAAACGAGCGTGCGGGCGCTCAACCTGTTAGAGAGGTAGAATGCGTAAGTCAGGGATCG
66 ACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCG
* * * * * *
14226441 GCCTGGTCCCCCTCTGCGTGTTGTCGGTCCCGCTGCCACAACCCTCAGTCTGGCTGGGGCTTAGA
131 GCCTGGTCCCCCTCTGCATGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGCTCGAGCTTAGA
* * *
14226506 CATGGAATGAACTCTGAATGCCAAAGCCAACCCATGAAATAGGTGTGCAGGCGCTTAGCCGGTCA
196 CATGGAATGAACTCTGAATGCCAAAGCCAACCCACGAAATAGGTGTGCAGGCGCTGAGCCGATCA
* * * * *
14226571 GAGAGGCAGAATGTGTAAGCTGGGGATCGACCCGGTCTCCCCTGCGTGCTGCCAATCCTGCTGTT
261 GAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGCCCCCCCTACGTGCTGCCAATCCTGCTGTT
14226636 GGTCCTACTATCGTAATCCTCGATCCGGTT
326 GGTCCTACTATCGTAATCCTCGATCCGGTT
*
14226666 TGATCTTAGACTGGGAATGAACTCCA-TATGCTTACACAAGGAATAAACTCCGTATGCCTAAGCC
1 TGATCTTAGACTGGGAATGAACT-CAGTATGCTTACACAAGGAATAAACTCCGTATGACTAAGCC
* * * *
14226730 AACCCACGAAACAAGCGTACGGGCGCTCAACGGGCCGGAGAGGCAGAATGTGCAAGCCGGGGACC
65 AACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACC
* * * * *
14226795 GATCC-GGTCCCCAC-CTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCT-GATCCGATCT
130 G-GCCTGGTCCCC-CTCTGCATGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGCT-CGAGCT
* ** * * *
14226857 TAGAC-TGGGAATGAACTCTGTATGCGTAAGTCAACCCACGAAATGAGCGT-T-CGGGTGCTGAG
192 TAGACAT-GGAATGAACTCTGAATGCCAAAGCCAACCCACGAAAT-AG-GTGTGCAGGCGCTGAG
* * *
14226919 CC-ATCGGAGAGGTATAATGTGCAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTG
254 CCGATCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGCCCCCC-CTACGTGCTG
14226977 TCTGTCCCGC
Statistics
Matches: 255, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
354 40 0.16
355 206 0.81
356 7 0.03
357 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (355 bp):
TGATCTTAGACTGGGAATGAACTCAGTATGCTTACACAAGGAATAAACTCCGTATGACTAAGCCA
ACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCG
GCCTGGTCCCCCTCTGCATGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGCTCGAGCTTAGA
CATGGAATGAACTCTGAATGCCAAAGCCAACCCACGAAATAGGTGTGCAGGCGCTGAGCCGATCA
GAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGCCCCCCCTACGTGCTGCCAATCCTGCTGTT
GGTCCTACTATCGTAATCCTCGATCCGGTT
Found at i:14226994 original size:158 final size:158
Alignment explanation
Indices: 14226705--14227191 Score: 437
Period size: 158 Copynumber: 3.1 Consensus size: 158
14226695 GCTTACACAA
* * * * * * * * *
14226705 GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAACGGGCCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACAAGCGTGCAGGCGCTGAGCCGACCGGAG
* * * * *
14226770 AGGCAGAATGTGCAAGCCGGGGACCGATCCGGTCCCCAC-CTGCATGCTGTC-GATCCTGCTACC
66 AGGCAAAATGTGCAAGCCGGGGATCGACCCGG-CCCCCCTCTGCGTGCTGTCTG-TCCTGCTACC
14226833 ACAACCCTCGGTCTGATCCGATCTTAGACTG
129 ACAACCCTCGGTCTG-TCCGATCTTAGACTG
** * * * ** * * * *
14226864 GGAATGAACTCTGTATGCGTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGAGCC-ATCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACAAGCGTGCAGGCGCTGAGCCGACCGGAG
* * * *
14226928 AGGTATAATGTGCAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTGTCTGTCCCGCTACCAC
66 AGGCAAAATGTGCAAGCCGGGGATCGACCCGGCCCCCCTCTGCGTGCTGTCTGTCCTGCTACCAC
* * * * *
14226993 AACCCTCGATTTGGCTGGAGCTTAGACAT-
131 AACCCTCGGTCTGTC-CGATCTTAGAC-TG
** * * * *
14227022 TTAATGAACTCCCTATGCCTAAGCCAACACATGAAACAAGCGTGCAGGCGCTTAGCCGACCGAAA
1 GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACAAGCGTGCAGGCGCTGAGCCGACCGGAG
* * * ** * * *
14227087 AGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCT-TGCGTGCTGCCAT-TCCTGCTGCCG
66 AGGCAAAATGTGCAAGCCGGGGATCGACCCGGCCCCCCTCTGCGTGCTGTC-TGTCCTGCTACCA
14227150 CAACCCTCGGTCTGGTCCGATCTTAGACTG
130 CAACCCTCGGTCT-GTCCGATCTTAGACTG
14227180 GGAATGAACTCC
1 GGAATGAACTCC
14227192 ATACGCTTAG
Statistics
Matches: 258, Mismatches: 62, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 164 0.64
159 87 0.34
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACAAGCGTGCAGGCGCTGAGCCGACCGGAG
AGGCAAAATGTGCAAGCCGGGGATCGACCCGGCCCCCCTCTGCGTGCTGTCTGTCCTGCTACCAC
AACCCTCGGTCTGTCCGATCTTAGACTG
Found at i:14227499 original size:501 final size:502
Alignment explanation
Indices: 14226346--14227504 Score: 1122
Period size: 501 Copynumber: 2.3 Consensus size: 502
14226336 GTATGCTTAG
* * * * *
14226346 ACATGGAATGAACTCCGTATGACTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCTGTT
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCC-GTC
* * * * *
14226411 AGAGAGGTAGAATGCGTAAGTCAGGGATCGGCCTGGTCCCCCTCTGCGTGTTGTCGGTCCCGCTG
65 AGAGAGGTAGAATGTGCAAGCCGGGGATCGGCC-GGTCCCCC-CTGTGTGTTGTC-GTCCCGCTG
* ** *
14226476 CCACAACCCTC-AGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGAATGCCAAAGCCAACCCA
127 CCACAACCCTCGA-TCTGGCTGGAGCTTAGACATGGAATGAACTCCCAATGCCAAAGCCAACACA
* * * ** * * * * **
14226540 TGAAATAGGTGTGCAGGCGCTTAGCCGGTCAGAGAGGCAGAATGTGTAAGCTGGGGATCGACCCG
191 TGAAACAAGCGTGCAGGCGCTTAGCCGACCAGAAAGGCAAAATGCGCAAGCCAGGGATCGACCCG
* * * **
14226605 GTCTCCCCTGCGTGCTGCCAATCCTGCTGTTGGTCCTACTATCGTAATCCTCGATCCGGTTTGAT
256 ATCTCCCCTGCGTGCTGCCAATCCTGC--TTGG--C--C--TCGCAACCCTCGATCCGGTCCGAT
*
14226670 CTTAGACTGGGAATGAACTCCATATGCTTACACAAGGAATAAACTCCGTATGCCTAAGCCAACCC
313 CTTAGACTGGGAATGAACTCCATACGCTTACACAAGGAATAAACTCCGTATGCCTAAGCCAACCC
* * * ** *
14226735 ACGAAACAAGCGTACGGGCGCTCAACGGGCCGGAGAGGCAGAATGTGCAAGCCGGGGACCGATCC
378 ACGAAACAAGCGTACAGGCGCTCAACGAGCCAGAGAGGCAGAATACGCAAGCCGGGGACCGACCC
* * * * * * *
14226800 GGTCCCCACCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCTGATCCGATCTTAG
443 GGTCCCCACCTACATACTGCCGATCCTGCTACCACAACCCTCGGTCTGATCAGAGCCTAA
* * * * * * *
14226860 AC-TGGGAATGAACTCTGTATGCGTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGAGCCATC
1 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGTC
* * * * *
14226924 GGAGAGGTATAATGTGCAAGCCGGGGATCGACCCGG-CCCCCCTCTACGTGCTGTCTGTCCCGCT
65 AGAGAGGTAGAATGTGCAAGCCGGGGATCG-GCCGGTCCCCCCTGT--GTGTTGTC-GTCCCGCT
* * ** * *
14226988 ACCACAACCCTCGATTTGGCTGGAGCTTAGACATTTAATGAACTCCCTATGCCTAAGCCAACACA
126 GCCACAACCCTCGATCTGGCTGGAGCTTAGACATGGAATGAACTCCCAATGCCAAAGCCAACACA
*
14227053 TGAAACAAGCGTGCAGGCGCTTAGCCGACC-GAAAAGGCAAAATGCGCAAGCCAGGGATCGGCCC
191 TGAAACAAGCGTGCAGGCGCTTAGCCGACCAG-AAAGGCAAAATGCGCAAGCCAGGGATCGACCC
* * *
14227117 GATC-CCCCTTGCGTGCTGCCATTCCTGC-T-G-C-CGCAACCCTCGGTCTGGTCCGATCTTAGA
255 GATCTCCCC-TGCGTGCTGCCAATCCTGCTTGGCCTCGCAACCCTCGATCCGGTCCGATCTTAGA
* ** * * * * * *
14227177 CTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACTTCGTATGGCTAAGTCAACCCATGAAA
319 CTGGGAATGAACTCCATACGCTTACACAAGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAA
** * * * *
14227242 TGAGCGTGCAGGCGCTCAGAC-AGCCAGAGAGGTAGAATACGTAAGCCGGGGACTGACCCGGTCC
384 CAAGCGTACAGGCGCTCA-ACGAGCCAGAGAGGCAGAATACGCAAGCCGGGGACCGACCCGGTCC
* * * *
14227306 CC-CTCTACGTACTGCC-AGTCCTGCTGCCACAACCCTCAGT-TCGA-CTAGGGCCTAA
448 CCAC-CTACATACTGCCGA-TCCTGCTACCACAACCCTCGGTCT-GATC-AGAGCCTAA
* * * * *
14227361 ACATGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAATGGGCGTGCGGGTGCTTAGCCGGCC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCC-GTC
* * *
14227426 AGAGAGGTAGAATGTGCAAGCCGGGGATAGGCTCGGTCCCCCCTGTGTGTTATCGATCCTGCTGC
65 AGAGAGGTAGAATGTGCAAGCCGGGGATCGGC-CGGTCCCCCCTGTGTGTTGTCG-TCCCGCTGC
*
14227491 CGCAACCCTCGATC
128 CACAACCCTCGATC
14227505 CGATTCGATC
Statistics
Matches: 520, Mismatches: 108, Indels: 47
0.77 0.16 0.07
Matches are distributed among these distances:
500 5 0.01
501 239 0.46
502 34 0.07
503 8 0.02
504 1 0.00
509 1 0.00
510 1 0.00
511 2 0.00
512 10 0.02
513 167 0.32
514 52 0.10
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (502 bp):
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGTCA
GAGAGGTAGAATGTGCAAGCCGGGGATCGGCCGGTCCCCCCTGTGTGTTGTCGTCCCGCTGCCAC
AACCCTCGATCTGGCTGGAGCTTAGACATGGAATGAACTCCCAATGCCAAAGCCAACACATGAAA
CAAGCGTGCAGGCGCTTAGCCGACCAGAAAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCTC
CCCTGCGTGCTGCCAATCCTGCTTGGCCTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAA
TGAACTCCATACGCTTACACAAGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGT
ACAGGCGCTCAACGAGCCAGAGAGGCAGAATACGCAAGCCGGGGACCGACCCGGTCCCCACCTAC
ATACTGCCGATCCTGCTACCACAACCCTCGGTCTGATCAGAGCCTAA
Found at i:14227617 original size:343 final size:342
Alignment explanation
Indices: 14226855--14227622 Score: 902
Period size: 343 Copynumber: 2.2 Consensus size: 342
14226845 CTGATCCGAT
* * * * * * *
14226855 CTTAGACTGGGAATGAACTCTGTATGCGTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAAC
* * ** * * *
14226920 CATCGGAGAGGTATAATGTGCAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTGTCTGTCCC
66 CAGCGGAGAGGTAGAATACGCAAGCCGGGGATCGACCCGGCCCCCCTCTACGTACTGCCAGTCCC
* * * * **
14226985 GCTACCACAACCCTCGATTTGGCTGGAGCTTAGACATTTAATGAACTCCCTATGCCTAAGCCAAC
131 GCTACCACAACCCTCGATTCGACTGGAGCCTAAACATGGAATGAACTCCCTATGCCTAAGCCAAC
*
14227050 ACATGAAACAAGCGTGCAGGCGCTTAGCCGACCGAAAAGGCAAAATGCGCAAGCCAGGGATCGGC
196 ACATGAAACAAGCGTGCAGGCGCTTAGCCGACCGAAAAGGCAAAATGCGCAAGCCAGGGATAGGC
* * * *
14227115 CCGATCCCCCTTGCGTGCTGCCATTCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
261 CCGATCCCCCCTGCGTGCTGCCATTCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTG
14227180 GGAATGAACTCCATACG
326 GGAATGAACTCCATACG
* * * *
14227197 CTTAGACTGGGGATGAACTTCGTATGGCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAGA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA-A
* * *
14227262 -CAGCCAGAGAGGTAGAATACGTAAGCCGGGGA-CTGACCCGGTCCCCCTCTACGTACTGCCAGT
65 CCAG-CGGAGAGGTAGAATACGCAAGCCGGGGATC-GACCCGGCCCCCCTCTACGTACTGCCAGT
* *
14227325 CCTGCTGCCACAACCCTC-AGTTCGACTAGG-GCCTAAACATGGAATGAACTCCCTATGCCTAAG
128 CCCGCTACCACAACCCTCGA-TTCGACT-GGAGCCTAAACATGGAATGAACTCCCTATGCCTAAG
*** * * * * * * * *
14227388 CCAAC-CGATGAAATGGGCGTGCGGGTGCTTAGCCGGCC-AGAGAGGTAGAATGTGCAAGCCGGG
191 CCAACAC-ATGAAACAAGCGTGCAGGCGCTTAGCCGACCGA-AAAGGCAAAATGCGCAAGCCAGG
* * * * * * *
14227451 GATAGGCTCGGTCCCCCCTGTGTGTTATCGA-TCCTGCTGCCGCAACCCTCGATCCGATTCGATC
254 GATAGGCCCGATCCCCCCTGCGTGCT-GCCATTCCTGCTGCCGCAACCCTCGATCCGATCCGATC
*
14227515 TTAGACTGGGAATGAACTCCATATG
318 TTAGACTGGGAATGAACTCCATACG
* *
14227540 CTTCGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAAC
*
14227605 CGGCTGGAGAGGTAGAAT
66 CAGC-GGAGAGGTAGAAT
14227623 GCACGAGCAG
Statistics
Matches: 355, Mismatches: 61, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
342 61 0.17
343 290 0.82
344 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAAC
CAGCGGAGAGGTAGAATACGCAAGCCGGGGATCGACCCGGCCCCCCTCTACGTACTGCCAGTCCC
GCTACCACAACCCTCGATTCGACTGGAGCCTAAACATGGAATGAACTCCCTATGCCTAAGCCAAC
ACATGAAACAAGCGTGCAGGCGCTTAGCCGACCGAAAAGGCAAAATGCGCAAGCCAGGGATAGGC
CCGATCCCCCCTGCGTGCTGCCATTCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCATACG
Found at i:14227739 original size:26 final size:26
Alignment explanation
Indices: 14227710--14227762 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14227700 CCGGCCCGAT
14227710 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14227736 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14227762 C
1 C
14227763 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14227853 original size:196 final size:196
Alignment explanation
Indices: 14227510--14227865 Score: 479
Period size: 196 Copynumber: 1.8 Consensus size: 196
14227500 CGATCCGATT
* * *
14227510 CGATCTTAGACTGGGAATGAACTCCATATGCTTCGACTGGGGATGAACTCCGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * *
14227575 ACCCACGAAATGAGCATGCGGGCGCTCAACCGGCTGGAGAGGTAGAATGCACGAGCAGGGGATGA
66 ACCCACGAAAAGAGCATGCAAGCGCTCAACCGGCTGGAGAGGCAGAATGCACAAGCAGGGGACGA
14227640 GCTCGATCCCCCCTGCATGCTATCGATCCTACTACTGGTCTTGCTACCACAACCCTTAGTCCGGC
131 GCTCGATCCCCCCTGCATGCTATCGATCCTACTACTGGTCTTGCTACCACAACCCTTAGTCCGGC
14227705 C
196 C
* *
14227706 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCC
1 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCC
** * *
14227770 AACCCACGAAAAGAGTGTGCAAGTGCTCAACC-GATCGGAGAGGCAGAATGCACAAGC-GGGGAC
65 AACCCACGAAAAGAGCATGCAAGCGCTCAACCGGCT-GGAGAGGCAGAATGCACAAGCAGGGGA-
* *
14227833 CG-GC-CTGATCCCTTCCTGCATGCTGTCGATCCT
128 CGAGCTC-GATCCC-CCCTGCATGCTATCGATCCT
14227866 GCTGCTGCAA
Statistics
Matches: 138, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
194 1 0.01
195 15 0.11
196 121 0.88
197 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (196 bp):
CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAAAGAGCATGCAAGCGCTCAACCGGCTGGAGAGGCAGAATGCACAAGCAGGGGACGA
GCTCGATCCCCCCTGCATGCTATCGATCCTACTACTGGTCTTGCTACCACAACCCTTAGTCCGGC
C
Found at i:14227930 original size:26 final size:26
Alignment explanation
Indices: 14227894--14227946 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14227884 CCGATCCGTT
*
14227894 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
14227920 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
14227946 C
1 C
14227947 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:14228630 original size:26 final size:26
Alignment explanation
Indices: 14228578--14228630 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14228568 CTGATTCGAT
*
14228578 CTTAGACTGGGAATAAACTCTGAATG
1 CTTAGACTGGGAATAAACTCCGAATG
* *
14228604 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATAAACTCCGAATG
14228630 C
1 C
14228631 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGAATG
Found at i:14230196 original size:26 final size:26
Alignment explanation
Indices: 14230167--14230219 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14230157 CTGGTCCAAT
* *
14230167 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
14230193 CTTACATTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
14230219 C
1 C
14230220 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:14230645 original size:159 final size:159
Alignment explanation
Indices: 14230337--14230795 Score: 421
Period size: 159 Copynumber: 2.9 Consensus size: 159
14230327 GCCGGTCCTA
* **
14230337 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * *
14230402 CACGAAACAAGAGTACGGGCACTGAGCCGGCTAGAGAGGCATAATGCGCAAGTCGGGGATCGGCT
66 CACGAAACAAGAGTACGGGCACTCAACCGGCTAGAAAGGCAGAATGCGCAAGTCGGGGATCAGCC
* * *
14230467 TGATCCTCCTCTGCATGCTGTCGGTCTCG
131 TGATCCCCCCCTACATGCTGTCGGTCTCG
14230496 CTGCCACAACCCTCGGTCCGACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * *** * * * *
14230561 CATGACATGGGCGTGCGGGCACTCAACCGGCTGGAAAGGCAGAATGCGTAAGTCGGGGATCAGCC
66 CACGAAACAAGAGTACGGGCACTCAACCGGCTAGAAAGGCAGAATGCGCAAGTCGGGGATCAGCC
* * * *
14230626 TGGTCCCCCCCTACGTGCTGTCGAT-TATG
131 TGATCCCCCCCTACATGCTGTCGGTCT-CG
* * **** * *
14230655 CTTAGACATGGAATGAAC--TCCGTA-T---GCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 C-T-GCCA--CAACCCTCGGTCCG-ACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * ** *
14230714 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAAAGGCAGAATGCACAAGTCGGGGAT
61 CAACCCACGAAACAAGAGTACGGGCACTCAACCGGCTAGAAAGGCAGAATGCGCAAGTCGGGGAT
*
14230779 C-GACTCGATCCCCCCCT
126 CAGCCT-GATCCCCCCCT
14230796 GCGTACTGTC
Statistics
Matches: 249, Mismatches: 44, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 100 0.40
159 133 0.53
160 1 0.00
161 8 0.03
162 1 0.00
163 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
CTGCCACAACCCTCGGTCCGACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACAAGAGTACGGGCACTCAACCGGCTAGAAAGGCAGAATGCGCAAGTCGGGGATCAGCC
TGATCCCCCCCTACATGCTGTCGGTCTCG
Found at i:14230687 original size:26 final size:26
Alignment explanation
Indices: 14230651--14230707 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
14230641 TGCTGTCGAT
14230651 TATGCTTAGACATGGAATGAACTCCG
1 TATGCTTAGACATGGAATGAACTCCG
14230677 TATGCTTAGACATGGAATGAACTCCG
1 TATGCTTAGACATGGAATGAACTCCG
14230703 TATGC
1 TATGC
14230708 CTAAGCCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
TATGCTTAGACATGGAATGAACTCCG
Found at i:14231554 original size:26 final size:26
Alignment explanation
Indices: 14231524--14231573 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14231514 CAGTCTAATC
*
14231524 TTAGAC-TGTGAATGAACTCTGTATGG
1 TTAGACATG-GAATGAACTCCGTATGG
14231550 TTAGACATGGAATGAACTCCGTAT
1 TTAGACATGGAATGAACTCCGTAT
14231574 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:14231896 original size:159 final size:158
Alignment explanation
Indices: 14231550--14231986 Score: 457
Period size: 159 Copynumber: 2.8 Consensus size: 158
14231540 CTCTGTATGG
* * **
14231550 TTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCATTTAGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATTCGGGCACTCAGCC
* *** * * *
14231615 GG-TCGAAGAGGCAAAATGTACAAGCCGGGGACCAACCCGATCCCCCCTGTGTGCTGTCAATCCT
66 GGCT-GGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCT
* * * * * *
14231679 GCTGCTACAACGCTCATTTCGATCCAATC
130 GCTACCACAACCCTCATGTCGAGCCAAGC
* * * * *
14231708 TTAGA-ATGGGAATGCACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTAAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATTCGGGCACTCAGC
* * * **
14231772 CGGCTGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCTCCTCTGCGTGCTGTCGTTCC
65 CGGCTGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGATCC-CCCCTGCGTGCTGTCAATCC
***
14231837 TGCTACCACAACCCTCA-GTCGAGCTGGGGC
129 TGCTACCACAACCCTCATGTCGAGC-CAAGC
* * * *
14231867 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAATGGGCATACGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATTCGGGCACTCAGCC
* * * * * *
14231932 GACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCACTTCGTGCT
66 GGCTGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCT
14231987 ACCGATCCTA
Statistics
Matches: 228, Mismatches: 46, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 101 0.44
159 123 0.54
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATTCGGGCACTCAGCC
GGCTGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTG
CTACCACAACCCTCATGTCGAGCCAAGC
Found at i:14232065 original size:26 final size:26
Alignment explanation
Indices: 14232024--14232076 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14232014 CCAGTTCAAT
14232024 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14232050 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
14232076 C
1 C
14232077 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14232843 original size:26 final size:26
Alignment explanation
Indices: 14232807--14232859 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14232797 CCGATCTGAT
* *
14232807 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14232833 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14232859 C
1 C
14232860 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14233514 original size:26 final size:26
Alignment explanation
Indices: 14233478--14233527 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14233468 TTGATTCGAT
14233478 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
14233504 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14233528 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14233703 original size:26 final size:26
Alignment explanation
Indices: 14233666--14233718 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14233656 CCAGTTTGAT
*
14233666 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
14233692 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
14233718 C
1 C
14233719 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:14234089 original size:167 final size:166
Alignment explanation
Indices: 14233782--14234089 Score: 368
Period size: 167 Copynumber: 1.8 Consensus size: 166
14233772 CCCCCTAGCG
* * * * *
14233782 TGCTGTCGATCCTACTGTCGCAACCCTCGATCCGATCTGATCTTAGAGTGGGAATGAACTCTGTA
1 TGCTATCGATCCTACTGCCACAACCCTCGATCCGATCTGAGCTTAGAATGGGAATGAACTCTGTA
* * * * * * * **
14233847 TGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCGATCGGAGACGGATAATACGTGA
66 TGACTAAGCCAACCCACGAAACGAGCGTGCAGGCACTGAGCCGACCAGAGACGGAGAATACGCAA
*
14233912 GCCGGGGATCGGCCCCCCTCTGCATGCTACCAATCC
131 GCCAGGGATCGGCCCCCCTCTGCATGCTACCAATCC
* *
14233948 TGCTATCGATCCTGCTGCCACAACCCTCGATCCGAT-TGGGGCTTAGACAT-GGAATGAAACTCT
1 TGCTATCGATCCTACTGCCACAACCCTCGATCCGATCT-GAGCTTAGA-ATGGGAATG-AACTCT
* * * * * *
14234011 GTATTACTAAGCCAACCGACGAAACGAGTGTGCAGGCTCTGAGCCGACCAGAGAGGGAGAATGCG
63 GTATGACTAAGCCAACCCACGAAACGAGCGTGCAGGCACTGAGCCGACCAGAGACGGAGAATACG
14234076 CAAGCCAGGGATCG
128 CAAGCCAGGGATCG
14234090 ACCCGATCCC
Statistics
Matches: 116, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
165 1 0.01
166 45 0.39
167 70 0.60
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (166 bp):
TGCTATCGATCCTACTGCCACAACCCTCGATCCGATCTGAGCTTAGAATGGGAATGAACTCTGTA
TGACTAAGCCAACCCACGAAACGAGCGTGCAGGCACTGAGCCGACCAGAGACGGAGAATACGCAA
GCCAGGGATCGGCCCCCCTCTGCATGCTACCAATCC
Found at i:14234257 original size:159 final size:159
Alignment explanation
Indices: 14233961--14234269 Score: 363
Period size: 159 Copynumber: 1.9 Consensus size: 159
14233951 TATCGATCCT
* ** *
14233961 GCTGCCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAAACTCTGTATTACTAAGCCAA
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAAACTCCCTATGACTAAGCCAA
* * * *
14234026 CCGACGAAACGAGTGTGCAGGCTCTGAGCCGACCAGAGAGGGAGAATGCGCAAGCCAGGGATCGA
66 CCCACGAAACGAGTGTGCAGGCTCTCAACCGACCAGAGACGGAGAATGCGCAAGCCAGGGATCGA
14234091 CCCGATCCCCCTCTACGTGCTGCTGGTCCC
131 CCCGATCCCCC-CTACGTGCTGCTGGTCCC
* * * * *
14234121 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATG-AACTCCCTATGCCTTAGCCAA
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAAACTCCCTATGACTAAGCCAA
* * * * * * *
14234185 CCCATGAAACG-GTTGTGC-GGGTGCTCAACCGGCCGGAGACGTAGAATGCGTAAGCCGGGGATC
66 CCCACGAAACGAG-TGTGCAGGCT-CTCAACCGACCAGAGACGGAGAATGCGCAAGCCAGGGATC
* * *
14234248 GGCCTGATCCCCCCTGCGTGCT
129 GACCCGATCCCCCCTACGTGCT
14234270 ACCGATCCTG
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
158 12 0.10
159 73 0.59
160 39 0.31
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAAACTCCCTATGACTAAGCCAA
CCCACGAAACGAGTGTGCAGGCTCTCAACCGACCAGAGACGGAGAATGCGCAAGCCAGGGATCGA
CCCGATCCCCCCTACGTGCTGCTGGTCCC
Found at i:14234343 original size:26 final size:26
Alignment explanation
Indices: 14234307--14234359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14234297 CCAGTTCGAT
14234307 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14234333 CTTAGTCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14234359 C
1 C
14234360 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14234366 original size:27 final size:26
Alignment explanation
Indices: 14234313--14234366 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14234303 CGATCTTAGA
*
14234313 CTGGGAATGAACTCCGTATGCTTAGT
1 CTGGGAATGAACTCCGTATGCTAAGT
*
14234339 CTGGGGATGAACTCCGTATGCCTAAGT
1 CTGGGAATGAACTCCGTATG-CTAAGT
14234366 C
1 C
14234367 AACCCACGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (26 bp):
CTGGGAATGAACTCCGTATGCTAAGT
Found at i:14234727 original size:26 final size:26
Alignment explanation
Indices: 14234675--14234727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14234665 CCAGTCCGAT
*
14234675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
14234701 CTTAGACAT-GGAATGAACTCTGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
14234727 C
1 C
14234728 CTAAGCCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14235227 original size:26 final size:26
Alignment explanation
Indices: 14235176--14235228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14235166 CCAGTCTGAT
* *
14235176 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14235202 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14235228 C
1 C
14235229 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14235941 original size:26 final size:26
Alignment explanation
Indices: 14235903--14235955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14235893 GGCTTAAACT
14235903 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14235929 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14235955 C
1 C
14235956 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14236282 original size:26 final size:26
Alignment explanation
Indices: 14236246--14236298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14236236 CTGGTTCGAT
*
14236246 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14236272 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14236298 C
1 C
14236299 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14236401 original size:184 final size:183
Alignment explanation
Indices: 14236087--14236643 Score: 539
Period size: 196 Copynumber: 3.0 Consensus size: 183
14236077 TCTGGTTGGG
* * * * * *
14236087 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * *
14236152 CCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCTCAGTCCCCCTTGCGTGCTACCGATCC
66 -CGGTCGGAGAGGCAGAATACGCAAGC-GGGGATCGGCTCGGTCCCCCTTGCGTGCTATCGATCC
* * *
14236217 TACTGTCGGAACCCTCGA-CCTGGTTCGATCTTAGATTGGGAATGAACTCCATAT
129 TGCTGTCGTAACCCTCGAGCCTGGTTCGATCTTAGACTGGGAATGAACTCCATAT
* * *
14236271 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
14236335 GCAGGTCGGAGAGGCAGAATACACAAGTCGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATC
65 GC-GGTCGGAGAGGCAGAATACGCAAG-CGGGGATCGGCTCGGTCCCCCTTGCGTGCTATCGATC
* ** **
14236400 CTGCTGCTAGTCTTGCTATCGTAAGCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCAT
128 CTGCTG-TCG--TAACCCTCG--AGCC-TGG--T--TC-GATCTTAGACTGGGAATGAACTCCAT
14236465 AT
182 AT
* * * * *
14236467 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTACAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
14236532 TCGGTCGGAGAGGCAAAATAGGCAAGCCGGGGA-CTGGCTCGATCCCCCTTGCGTGCTATCGATA
66 -CGGTCGGAGAGGCAGAATACGCAAG-CGGGGATC-GGCTCGGTCCCCCTTGCGTGCTATCGATC
* * * * *
14236596 CTGTTGCCGTAACCCTCGATCC-GGTCCGATCGTAGACT-GGAATGAACT
128 CTGCTGTCGTAACCCTCGAGCCTGGTTCGATCTTAGACTGGGAATGAACT
14236644 TCGTATGCCT
Statistics
Matches: 301, Mismatches: 54, Indels: 37
0.77 0.14 0.09
Matches are distributed among these distances:
183 12 0.04
184 119 0.40
185 4 0.01
187 5 0.02
189 3 0.01
190 2 0.01
191 6 0.02
193 6 0.02
195 4 0.01
196 138 0.46
197 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CGGTCGGAGAGGCAGAATACGCAAGCGGGGATCGGCTCGGTCCCCCTTGCGTGCTATCGATCCTG
CTGTCGTAACCCTCGAGCCTGGTTCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:14236988 original size:25 final size:26
Alignment explanation
Indices: 14236942--14236990 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
14236932 CCGATCCGAT
14236942 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14236968 CTTAGACTGGG-ATGAACTCCATA
1 CTTAGACTGGGAATGAACTCCATA
14236991 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14237448 original size:169 final size:160
Alignment explanation
Indices: 14237159--14237821 Score: 433
Period size: 158 Copynumber: 4.1 Consensus size: 160
14237149 GGCTTAGACA
* * * * * * * * *
14237159 TGGAATGAACTTCGTATGTCTAAGCCAACCTATGAAACGTGCGTGCGGGCACTCAACTGGTC-GA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC-CGACAGG
* * * * * * *
14237223 AGAGGCAGAATGTACAAGCCGGGGA-TCGACCTAGTCCCCCCTACGTGCTATCGATCCTGCTGCT
65 AGAGGCAGAATGCACAAGTCAGGGATTGGCCCGA-TCCCCCCTACGTGCTGTCGATCCTGCTGCT
* ** *
14237287 GGTCCTGTTACCGTAACCCTCAGTCTGGTTCAATCTTAGAT
129 -AT-C-G----C--AACCCTCAGTCCAGTCCAATCTTAGAT
* *
14237328 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTACGGGCGCTCAACCGACAGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACAGGA
* *
14237393 GAGGCAGAATGCACAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCT-C--CTAT
66 GAGGCAGAATGCACAAGTCAGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTAT
* *
14237455 CGCAACCCTCGGTCCAGTCCGATCTTAGAT
131 CGCAACCCTCAGTCCAGTCCAATCTTAGAT
* * ** *
14237485 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCT-AAGCCGGCCA
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA-CC-GACA
* ** * *
14237549 -GAGAGGCATAATGCACAAGTCAGGGATTGGCCCGATCCTCTTCTACGTGCTGTCGGTCCCGCTG
63 GGAGAGGCAGAATGCACAAGTCAGGGATTGGCCCGATCC-CCCCTACGTGCTGTCGATCCTGCTG
* * * *****
14237613 C---CACAACCCTCGGTCCGGTTGGGGCTTAGACT
127 CTATCGCAACCCTCAGTCCAGTCCAATCTTAGA-T
* * * * * *
14237645 TGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-G-GTGCTCGGGCACTTAGCCGATC-
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTG--CGGGCGCTCAACCGA-CA
* ** * * * * * * * *
14237707 GGAGAGGCAAAATGTGCAAGCCAGGGATTGACCTGGTCCCTCTTGCGTGCTGTCGATCCTACTGC
63 GGAGAGGCAGAATGCACAAGTCAGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGC
**
14237772 ---CGCAACCCTC-GATCGGGTCCAATCTTAGACT
128 TATCGCAACCCTCAG-TCCAGTCCAATCTTAGA-T
* *
14237803 GGGAATGAACTCTGTATGC
1 TGGAATGAACTCCGTATGC
14237822 TTAGGCTGGG
Statistics
Matches: 398, Mismatches: 80, Indels: 43
0.76 0.15 0.08
Matches are distributed among these distances:
157 29 0.07
158 143 0.36
159 115 0.29
160 4 0.01
162 1 0.00
163 1 0.00
164 1 0.00
165 1 0.00
166 2 0.01
168 3 0.01
169 93 0.23
170 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (160 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACAGGA
GAGGCAGAATGCACAAGTCAGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTAT
CGCAACCCTCAGTCCAGTCCAATCTTAGAT
Found at i:14237567 original size:158 final size:157
Alignment explanation
Indices: 14237301--14237821 Score: 505
Period size: 158 Copynumber: 3.3 Consensus size: 157
14237291 CTGTTACCGT
* * * *
14237301 AACCCTCAGTCTGGTTCAATCTTAGATTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT
1 AACCCTCGGTCCGGTCCGATCTTAGATTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT
* * * *
14237366 GAACGTACGGGCGCTCAA-CC-GACAGGAGAGGCAGAATGCACAAGTCAAGGATTGGCCCGATCC
66 GAGCGTGCGGGCGCT-AAGCCGGACA-GAGAGGCAAAATGCACAAGTCAGGGATTGGCCCGATCC
* **
14237429 CCCCTGCGTGCTGTCGATCCTCCTATCGC
129 CTCCTGCGTGCTGTCGATCCTCCTGCCGC
* * * **
14237458 AACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAA
1 AACCCTCGGTCCGGTCCGATCTTAGATT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* *
14237523 TGAGCGTGCGGGCGCTAAGCCGGCCAGAGAGGCATAATGCACAAGTCAGGGATTGGCCCGATCCT
65 TGAGCGTGCGGGCGCTAAGCCGGACAGAGAGGCAAAATGCACAAGTCAGGGATTGGCCCGATCC-
* * * *
14237588 CTTCTACGTGCTGTCGGTCC-CGCTGCCAC
129 CTCCTGCGTGCTGTCGATCCTC-CTGCCGC
** ** * *
14237617 AACCCTCGGTCCGGTTGGGGCTTAGACTTGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * ** * * * *
14237682 CG-G-GTGCTCGGGCACTTAGCC-GATCGGAGAGGCAAAATGTGCAAGCCAGGGATTGACCTGGT
65 TGAGCGTG--CGGGCGCTAAGCCGGA-CAGAGAGGCAAAATGCACAAGTCAGGGATTGGCCCGAT
* *
14237744 CCCTCTTGCGTGCTGTCGATCCTACTGCCGC
127 CCCTCCTGCGTGCTGTCGATCCTCCTGCCGC
* * * * *
14237775 AACCCTCGATCGGGTCCAATCTTAGACTGGGAATGAACTCTGTATGC
1 AACCCTCGGTCCGGTCCGATCTTAGA-TTGGAATGAACTCCGTATGC
14237822 TTAGGCTGGG
Statistics
Matches: 293, Mismatches: 61, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 28 0.10
158 145 0.49
159 118 0.40
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
AACCCTCGGTCCGGTCCGATCTTAGATTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT
GAGCGTGCGGGCGCTAAGCCGGACAGAGAGGCAAAATGCACAAGTCAGGGATTGGCCCGATCCCT
CCTGCGTGCTGTCGATCCTCCTGCCGC
Found at i:14237831 original size:26 final size:26
Alignment explanation
Indices: 14237795--14237847 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14237785 CGGGTCCAAT
14237795 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
14237821 CTTAGGCTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14237847 C
1 C
14237848 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14238057 original size:26 final size:26
Alignment explanation
Indices: 14238006--14238058 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14237996 CTGGTCCGAT
*
14238006 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14238032 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
14238058 C
1 C
14238059 ATAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14239421 original size:26 final size:26
Alignment explanation
Indices: 14239369--14239421 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14239359 CCGGTTCGAT
* *
14239369 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
14239395 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
14239421 C
1 C
14239422 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14239605 original size:481 final size:481
Alignment explanation
Indices: 14238783--14239740 Score: 1183
Period size: 481 Copynumber: 2.0 Consensus size: 481
14238773 TGCACTCAGT
* ** *
14238783 CGGCCGGAGAGGCAAAACACGTAAGCCGGGGATCGGTTCGGTCCCCCCTGCCTGCTGCCAATCCT
1 CGGCCGGAGAGGCAAAACACGGAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCAATCCT
** * * *
14238848 GTTGCTGGTCCTATTGCCACAACCTTCGATCCGGTTTGATCTTATACTGGGAATGAACTTCATAT
66 ACTGCTGGTCCTATTGCCACAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTTCATAT
* * * **
14238913 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
131 GCTTAGACATGAAATGAACTCCACATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
* * * * * * *
14238978 CCAACTGGAGAGGCAGAATGTGCAAGTCGGGGACCGTCCCGGTCCCCCCTACGTGCGATCGATCC
196 CCAACCGGAGAGGCAAAATGTACAAGCCGGGGACCGGCCCGGTCCACCCTACGTGCGATCAATCC
* * * * * * **
14239043 TGCTATCACAATCCTCGGTTCGGCCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
261 TGCGACCACAACCCTCGATTCGACCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
* * ** * *
14239108 CCCACGAAACGAGCGTGTGGTCACTGAGCCGACCGAAGAGTTATAATGCACAAGTCGAAGATCGG
326 CCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAAGATCGC
* * * *
14239173 CCCGATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTTGATTC-GGCTGGGGCTTAGA
391 CCCAATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCC-TCAGTCTGGCTAGGGCTTAGA
14239237 CATGGAATGAACTCCCTATGCCTGAGC
455 CATGGAATGAACTCCCTATGCCTGAGC
* ** * *
14239264 CGGCCGGAGAGGCAGAATGCGGAAGTCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCGATCCT
1 CGGCCGGAGAGGCAAAACACGGAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCAATCCT
* * *
14239329 ACTGCTGGT-C--TTGCTATCGAAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCG
66 ACTGCTGGTCCTATTGCCA-C--AACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTTCA
* * * **
14239391 TATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTTTAGGCACT
128 TATGCTTAGACATGAAATGAACTCCACATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACT
* * * *
14239456 CAGCCGACCGGAGAGGCAAAATGTACAAGCCGGGGACCGGCCTGGTCTACCCTGCGTGCTG-TCA
193 CAGCCAACCGGAGAGGCAAAATGTACAAGCCGGGGACCGGCCCGGTCCACCCTACGTGC-GATCA
* * *
14239520 AT-CTGGCGGCCGCAACCCTC-ATTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTA
257 ATCCT-GCGACCACAACCCTCGATT-CGACCCAATCTTAGACTGGGAATGAACTCCATATGCCTA
* * * * * *
14239583 AGTCAACCCATGAAATGAGCGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGAG
320 AGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAA
** *
14239648 GATCGCCCCAATCTTCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCTGGCTAGGGC
385 GATCGCCCCAATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCAGTCTGGCTAGGGC
*
14239713 TTAGACATGGAATGACCTCCCTATGCCT
450 TTAGACATGGAATGAACTCCCTATGCCT
14239741 AAGACAATGC
Statistics
Matches: 401, Mismatches: 69, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
478 5 0.01
479 1 0.00
480 9 0.02
481 385 0.96
482 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (481 bp):
CGGCCGGAGAGGCAAAACACGGAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCAATCCT
ACTGCTGGTCCTATTGCCACAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTTCATAT
GCTTAGACATGAAATGAACTCCACATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
CCAACCGGAGAGGCAAAATGTACAAGCCGGGGACCGGCCCGGTCCACCCTACGTGCGATCAATCC
TGCGACCACAACCCTCGATTCGACCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAAGATCGC
CCCAATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCAGTCTGGCTAGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTGAGC
Found at i:14239905 original size:26 final size:26
Alignment explanation
Indices: 14239869--14239921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14239859 CCGGTCTGAT
*
14239869 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14239895 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14239921 C
1 C
14239922 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14240530 original size:26 final size:26
Alignment explanation
Indices: 14240492--14240544 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14240482 GGCTCAAACT
**
14240492 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACAAGGAATGAACTTC-GTATG
14240518 CTTAGACAAGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTTCGTATG
14240544 C
1 C
14240545 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTTCGTATG
Found at i:14240876 original size:26 final size:26
Alignment explanation
Indices: 14240838--14240887 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14240828 GTTCAATCTC
14240838 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
14240864 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14240888 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:14249575 original size:158 final size:157
Alignment explanation
Indices: 14249096--14249597 Score: 542
Period size: 158 Copynumber: 3.2 Consensus size: 157
14249086 CCAGCTGGGG
* * * *
14249096 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGCATTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * * *
14249161 CGACCGGAGAGGCAGAATACGTAAGCCGAGGATCGGCCCGATCCCTTCCTACGCGCTGTCGATCC
66 CGACCGAAGAGGCAGAAT-CGTAAGTCGGGGATCGGCCCGATCCC-TCCTACGTGCTATCGATCC
* * * * *
14249226 TGCTGCCGCAACCCTCGGTTCGGTTTGAT
129 TACTACCGCAACCCTCAGTCCGGCTTGAT
* * *
14249255 CTTAGAC-TGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * * * * *
14249319 CCGGCCAAAGAGGCATAATCGTAAGTCAGGGATCGGCCCGATCCACTTCTGCGTG-TGATCGATC
65 CCGACCGAAGAGGCAGAATCGTAAGTCGGGGATCGGCCCGATCC-CTCCTACGTGCT-ATCGATC
* * * * **
14249383 CCACTACCACAACCCTCAGTCTGGCTAGGG
128 CTACTACCGCAACCCTCAGTCCGGCTTGAT
* * * *
14249413 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * *
14249478 CGACCGAAGAGGCAGAATGCGGAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCT
66 CGACCGAAGAGGCAGAAT-CGTAAGTCGGGGATCGGCCCGATCCCTCCTACGTGCTATCGATCCT
* * *
14249543 ACTACCGTAACCCTCTGTCCGACTTGAT
130 ACTACCGCAACCCTCAGTCCGGCTTGAT
* *
14249571 CTTAGA-TTGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14249598 TTAGACCGGT
Statistics
Matches: 278, Mismatches: 58, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 181 0.65
159 95 0.34
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
CGACCGAAGAGGCAGAATCGTAAGTCGGGGATCGGCCCGATCCCTCCTACGTGCTATCGATCCTA
CTACCGCAACCCTCAGTCCGGCTTGAT
Found at i:14250330 original size:26 final size:26
Alignment explanation
Indices: 14250292--14250344 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14250282 GGCTCAAAAT
14250292 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14250318 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14250344 C
1 C
14250345 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14251858 original size:159 final size:158
Alignment explanation
Indices: 14251464--14251902 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 158
14251454 AACTCCGTAT
*
14251464 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
* * * * * * * * ** *
14251529 TCGACCAGAGAGGCAGAATGCGTAAGCCGGGGACTGGCTCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAAAATGAGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTACCGACCC
* ** ** *
14251594 TACTACTGCAACCCTCGGTCTGGTCTGA
131 CACTACCACAACCCTCAATCTAGTCTGA
* * * * * * *
14251622 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAA-CTCAACCCATGAAATGAATGTGTGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAATGAGTGTGCGGGCGCTC
* * * * * *
14251685 AGCCGGCCGAAGAGGCATAATGAGCAAGCCAGGGATTGACCCGATCCCCCTCTACGTGCTACCGG
64 AGCCGACCGGAGAGGCAAAATGAGCAAGCCGGGGATTGGCCCGATCCCCC-CTACGTGCTACCGA
* * *
14251750 CCCCGCTGCCACAACCCTCAATCTAG-CTGGG
128 CCCCACTACCACAACCCTCAATCTAGTCT-GA
* * *
14251781 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
* * * * *
14251846 CCTATCGGAGAGGCAAAATGCA-CAAGCCGGGGATCGGCCCGATCCCTCCTGCGTGCT
66 CCGACCGGAGAGGCAAAATG-AGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCT
14251903 GTCGATCCTG
Statistics
Matches: 221, Mismatches: 53, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 100 0.45
159 116 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATGAGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTACCGACCC
CACTACCACAACCCTCAATCTAGTCTGA
Found at i:14251969 original size:26 final size:26
Alignment explanation
Indices: 14251940--14251992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14251930 CTGGTCCAGT
14251940 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
14251966 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
14251992 C
1 C
14251993 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:14252323 original size:26 final size:26
Alignment explanation
Indices: 14252294--14252346 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14252284 CCGGTCCGAT
14252294 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
14252320 CTTAGACATTGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14252346 C
1 C
14252347 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14252590 original size:855 final size:848
Alignment explanation
Indices: 14250938--14252898 Score: 2311
Period size: 855 Copynumber: 2.3 Consensus size: 848
14250928 CCCTCTGCAT
* * *
14250938 GCTGGAGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGC
* * * ** * *
14251003 ACTCAGCCGATCGGAGAGGCAGAATTCACAAGCCCGGGACCGGCTTGATCCCCCCTGCGTGTTGC
66 ACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGA
* * *
14251068 CAATCTTGCTGTCGCAAACCCCGTTCCGGTCTGATCTTAGACTGGGAATG-ACTCCGTATGCTTA
131 CGATCCTGCTGTCGC-AACCCCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* ** * *
14251132 GACCAGGGGATGAACTCCTATTTCTAAGTCCAACCCATG-AA-ATG-A-ACGGG-G---G--G-T
195 GA-CTGGGGATGAACTCCTATGCCTAAGT-CAACCCACGAAACAAGCATACGGGCGTCAGCCGAT
** * *
14251186 ---TTGCCGACCGGAAGGCATAATGCGCAAAGGCCGGGGATCAGCCCGATCCCCTTTACGTGCTG
258 CGAGAGGCGACCGGAAGGCATAATGCGCAAAGGCCGGGGATCAGCCCGATCCCCTCTACGTGCTG
* * *
14251248 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
323 CCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCAC
** *
14251313 AAAACGAGCGTGCGGGTGCTCAGCCGGTCGAGAGCAGAATGCAAAAGTCAGGGATCGACCCAGTC
388 AAAACGAGCGTGCGGGCACTCAGCCGGTCGAGAGCAAAATGCAAAAGTCAGGGATCGACCCAGTC
* ** * ** *
14251378 CCTCTGTGTGCTACCAATCCTGCTGCTGGTATTGCTGTCACAACCTTGTTCCGGTCCGATCTTAG
453 CCCCTACGTGCTACCAATCCTGCTGCTGGTACTGCTACCACAACCTTGATCCGGTCCGATCTTAG
*
14251443 ACTGGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
518 ACTAGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * * *
14251508 AATGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGTAAGCCGGGGACTGGCTCGATC
583 AACGAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATGCATAAGCCGAGGACCGCCTCGATC
* * *
14251573 CCCCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
648 CCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATG
* * * *
14251638 AACTTCGTATGCCTAACTCAACCCATGAAATGAATGTGTGGGCGTTGAGCCGGCCGAAGAGGCAT
713 AACTTCGTATGCCTAACTCAACCCATGAAACGAACGTGCGGGCGTTGAGCCGGCAGAAGAGGCAT
* *
14251703 AATGAGCAAGCCAGGGATTGACCCGATCCCCCTCTACGTGCTACCGGCCCCGCTGCCACAACCCT
778 AATGAGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGACCCCGCTGCCACAACCCT
14251768 CAATCTA
843 CAATC-A
* *
14251775 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGC
* * * * *
14251840 ACTCAGCCTATCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCTCCTGCGTGCTGT
66 ACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGA
* * * * *
14251905 CGATCCTGCTGTCGCAACCCTCGGTCTGGTC-CAGTCTTAGACTGGAAATGAACTCCATATGCTT
131 CGATCCTGCTGTCGCAACCC-CGATCCGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCTT
14251969 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGCGCTCAGCCGA
194 AGACTGGGGATGAACTCC-TATGCCTAAGTCAACCCACGAAACAAGCATACGGGCG-TCAGCCGA
* * * *
14252034 TCGGAGAGGCTAGCCGGAGAGGCATAATGCG-TAA-GCTGGGGATCAGCCCGATCCCCCTCTGCG
257 TC-GAGAGGCGA-CCGGA-AGGCATAATGCGCAAAGGCCGGGGATCAGCCCGAT-CCCCTCTACG
* *
14252097 TGTTGCCACAACCCTCAGTCTG-GT-GGGCTTAGACATGGAATAAACTCCATATGCCTAAGCCAA
318 TGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATAAACTCCATATGCCTAAGCCAA
** * * * * *
14252160 CCCATGAAACGAGCGTGCGGGCACTTAGCCGATTGGAGAGGCAAAATGTACAAG-CTAGGGATCG
383 CCCACAAAACGAGCGTGCGGGCACTCAGCCG-GTCGAGA-GCAAAATGCAAAAGTC-AGGGATCG
* * * * **
14252224 GCCCGGTGCCCCCTACGTGCT-GCAGATCCTGCTGCTGGTCCTGCTACCGTAACCTTTGATCCGG
445 ACCCAGT-CCCCCTACGTGCTACCA-ATCCTGCTGCTGGTACTGCTACCACAACC-TTGATCCGG
* *
14252288 TCCGATCTTAGACTAGG-AATGAACTCCGTATGCTTAGACATTGAATGAACTTCGTATGCCTAAG
507 TCCGATCTTAGACTAGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * ** *
14252352 CCAACCCATGAAACGAGTGTGCGGGCACTCAG-CTGACTGGAGAGGCAGAATGCATAAGTCGAGG
572 CCAACCCACGAAACGAGCGTGCGGGCACTCAGTC-GACCAGAGAGGCAGAATGCATAAGCCGAGG
* *
14252416 ACCGACCT-GATCCCCTCTGTGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGATCTAATCT
636 ACCG-CCTCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGATCTAATCT
* * *
14252480 TAGACTGGGAATGAAGTTCGTATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCTG
700 TAGACTGGGAATGAACTTCGTATGCCTAACTCAACCCATGAAACGAACGTGCGGGCGTTGAGCCG
* * * * * *
14252545 GTCAG-AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTATCGATCTC
765 G-CAGAAGAGGCATAATGAGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGACCCC
* *
14252609 GCTGCCACAACCCTCAGTCC
829 GCTGCCACAACCCTCAATCA
* *
14252629 GACTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGG
1 G-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG
** * * * * *** ** * * *
14252694 GGCTTAACCGATCGAAAAGGCAGAATGTGTAAGCCAGGGATCGAACCGGTCCCCCCTACATGCT-
65 CACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTG
* ** * * * * *
14252758 ACTGATCCTACTACCGTAACCCCCTATCCAGTTTGATCTTAGACTGGGAATGAACTCTGTATGCT
130 AC-GATCCTGCTGTCGCAA-CCCCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
14252823 TAGACTGGGGATGAACTCCATTTGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGTTCAGCCG
193 TAGACTGGGGATGAACTCC-TATGCCTAAGTCAACCCACGAAACAAGCATACGGGCG-TCAGCCG
*
14252888 ACCAGAGAGGC
256 ATC-GAGAGGC
14252899 AGGATGCGTA
Statistics
Matches: 945, Mismatches: 143, Indels: 54
0.83 0.13 0.05
Matches are distributed among these distances:
836 6 0.01
837 173 0.18
838 26 0.03
839 2 0.00
840 1 0.00
841 5 0.01
842 1 0.00
846 1 0.00
848 1 0.00
849 1 0.00
852 63 0.07
853 27 0.03
854 64 0.07
855 542 0.57
856 32 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (848 bp):
GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGC
ACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGA
CGATCCTGCTGTCGCAACCCCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTGGGGATGAACTCCTATGCCTAAGTCAACCCACGAAACAAGCATACGGGCGTCAGCCGATCGA
GAGGCGACCGGAAGGCATAATGCGCAAAGGCCGGGGATCAGCCCGATCCCCTCTACGTGCTGCCA
CAACCCTCAGTCTGACTGGGGCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACAAA
ACGAGCGTGCGGGCACTCAGCCGGTCGAGAGCAAAATGCAAAAGTCAGGGATCGACCCAGTCCCC
CTACGTGCTACCAATCCTGCTGCTGGTACTGCTACCACAACCTTGATCCGGTCCGATCTTAGACT
AGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATGCATAAGCCGAGGACCGCCTCGATCCCC
CCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAAC
TTCGTATGCCTAACTCAACCCATGAAACGAACGTGCGGGCGTTGAGCCGGCAGAAGAGGCATAAT
GAGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGACCCCGCTGCCACAACCCTCAA
TCA
Found at i:14252674 original size:159 final size:158
Alignment explanation
Indices: 14252320--14252693 Score: 380
Period size: 158 Copynumber: 2.4 Consensus size: 158
14252310 ACTCCGTATG
* *
14252320 CTTAGACATTGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * ** *
14252385 TGACTGGAGAGGCAGAATGCATAAGTCGAGGACCGACCTGATCCCCTCTGTGTGCTGTCGATCCT
66 TGACTAGAGAGGCAGAATGCACAAGCCGAGGACCGACCCGATCCCCTCTACGTGCTATCGATCCT
* * *
14252450 ACTACCGCAACCCTCGGTCTGATCTAAT
131 ACTACCACAACCCTCAGTCCGATCTAAT
* ** *
14252478 CTTAGAC-TGGGAATGAAGTTCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * *
14252541 GCTG-GTCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTATCGA
64 GCTGACT-AGAGAGGCAGAATGCACAAGCCGAGGACCGACCCGAT-CCCCTCTACGTGCTATCGA
* * **
14252605 T-CTCGCTGCCACAACCCTCAGTCCGA-CTGGGT
127 TCCT-ACTACCACAACCCTCAGTCCGATCT-AAT
* * * * *
14252637 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGG
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
14252694 GGCTTAACCG
Statistics
Matches: 176, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 89 0.51
159 82 0.47
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
TGACTAGAGAGGCAGAATGCACAAGCCGAGGACCGACCCGATCCCCTCTACGTGCTATCGATCCT
ACTACCACAACCCTCAGTCCGATCTAAT
Found at i:14253571 original size:15 final size:15
Alignment explanation
Indices: 14253551--14253583 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14253541 TGAACTCCGT
14253551 ATGCTTAGACATGGA
1 ATGCTTAGACATGGA
*
14253566 ATGCTTATACATGGA
1 ATGCTTAGACATGGA
14253581 ATG
1 ATG
14253584 AACTCCGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (15 bp):
ATGCTTAGACATGGA
Found at i:14254070 original size:158 final size:158
Alignment explanation
Indices: 14253578--14254070 Score: 485
Period size: 158 Copynumber: 3.1 Consensus size: 158
14253568 GCTTATACAT
* *
14253578 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGAAG
* * * **
14253643 AGGCAGAATGCGTAAGCCAGGGATTGGCTCGGTCCACTCTTGTGTGCT-GTCGATCCTACTACCG
66 AGGCAGAATGCGTAAGCCAGGGATCGGCTCGGTCC-CCCCTACGTGCTAGT-GATCCTACTACCG
* *
14253707 CAACCCTCAGTCCGGTTCGATCTT-GACTG
129 TAACCCTCAGTCCAGTTCGATCTTAGACTG
* * * * ** **
14253736 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACAGAGCCGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGAAG
* * * * * * * *
14253801 AGGCATAATGCGCAAGCCGGGGAACGGCTTGGTCCCCCTCTACGTGC-AGTCAGTCCCACTACCA
66 AGGCAGAATGCGTAAGCCAGGGATCGGCTCGGTCCCCC-CTACGTGCTAGTGA-TCCTACTACCG
* * * **
14253865 TAACCCTCAGCCCAGCTGGGGCTTAGACAT-
129 TAACCCTCAGTCCAGTTCGATCTTAGAC-TG
* * * ** * * *
14253895 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGGGGCTTAACCGATCGAAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGAAG
* * * *
14253960 AGGCAGAATGTGTAAGCCAGGGATCGAAC-CGGTCCCCCCTACATGCTACTGATCCTACTACCGT
66 AGGCAGAATGCGTAAGCCAGGGATCG-GCTCGGTCCCCCCTACGTGCTAGTGATCCTACTACCGT
* *
14254024 AACCCCCTA-TCCAGTTTGATCTTAGACTG
130 AACCCTC-AGTCCAGTTCGATCTTAGACTG
14254053 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14254071 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 64, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 170 0.65
159 86 0.33
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGAAG
AGGCAGAATGCGTAAGCCAGGGATCGGCTCGGTCCCCCCTACGTGCTAGTGATCCTACTACCGTA
ACCCTCAGTCCAGTTCGATCTTAGACTG
Found at i:14254815 original size:26 final size:26
Alignment explanation
Indices: 14254777--14254829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14254767 GGCTCAAAAT
*
14254777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14254803 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14254829 C
1 C
14254830 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14254989 original size:26 final size:26
Alignment explanation
Indices: 14254960--14255012 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14254950 TCCGGTCGAT
*
14254960 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14254986 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14255012 C
1 C
14255013 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14255357 original size:26 final size:26
Alignment explanation
Indices: 14255328--14255380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14255318 CCGATCTGAT
14255328 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14255354 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14255380 C
1 C
14255381 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14255359 original size:184 final size:182
Alignment explanation
Indices: 14255169--14255732 Score: 553
Period size: 184 Copynumber: 3.0 Consensus size: 182
14255159 TCCGACAAGG
* * *
14255169 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGC-AACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * *
14255234 TCGA-TCGGAGAGGTAGAATGCGCAAGTCGGGGACCGACTCGGTCCCCCCTGCGTGCTGCCGATC
65 CCGACT-GGAGAGGTAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
14255298 CTGTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
128 CTGTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
* * * *
14255353 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CAACCCACGAAACGAGCGTGCGAGCGCTCA
* * * * * * * *
14255417 GCCGACTAGAGAGGCAGATTGCGTAAGCGGGGATCGACCCGATCCCCTCTGCATGCTATCGATCC
64 GCCGACTGGAGAGGTAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGAT-C
* * * * *
14255482 TGCTATTGGTATTGCTACTACAACCCTCGATCGGTTC-GATCTTAGAC-AGGGAATTAACTCCGT
128 --C---T-G--TTG-T-C-GCAACCCTCGGTCCGATCTGATCTTAGACTA-GGAATGAACTCCGT
14255545 AT
181 AT
* * * *
14255547 GCTTAGACATGGAATTAACTCTATATGCCTAAGCCAACACACGAAACGAGCGTGC-AGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAG-CAACCCACGAAACGAGCGTGCGA-GCGCTCA
* * * *
14255611 GCCGACTGGAGAGGTAGAATGCCCAAGCCGAGGATCGGCCCGGTCCCCCCTGTGTGCTACCGATC
64 GCCGACTGGAGAGGTAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
* * ** * * *
14255676 TTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAT
128 CTGTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
14255731 GC
1 GC
14255733 CTAAGTCAAC
Statistics
Matches: 304, Mismatches: 55, Indels: 42
0.76 0.14 0.10
Matches are distributed among these distances:
183 44 0.14
184 102 0.34
185 2 0.01
186 2 0.01
188 1 0.00
189 2 0.01
190 1 0.00
192 3 0.01
193 2 0.01
194 101 0.33
195 44 0.14
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
CGACTGGAGAGGTAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCTG
TTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:14255573 original size:26 final size:26
Alignment explanation
Indices: 14255522--14255574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14255512 TCGGTTCGAT
*
14255522 CTTAGACAGGGAATTAACTCCGTATG
1 CTTAGACAGGGAATTAACTCCATATG
* *
14255548 CTTAGACATGGAATTAACTCTATATG
1 CTTAGACAGGGAATTAACTCCATATG
14255574 C
1 C
14255575 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACAGGGAATTAACTCCATATG
Found at i:14256052 original size:26 final size:26
Alignment explanation
Indices: 14256023--14256075 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14256013 CCGGTCTGAT
14256023 CTTAGACTGA-GAATGAACTCCGTATG
1 CTTAGA-TGAGGAATGAACTCCGTATG
* *
14256049 CTTAGATTAGGGATGAACTCCGTATG
1 CTTAGATGAGGAATGAACTCCGTATG
14256075 C
1 C
14256076 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATGAGGAATGAACTCCGTATG
Found at i:14256796 original size:26 final size:26
Alignment explanation
Indices: 14256745--14256797 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14256735 GGCTCAAAAT
* *
14256745 CTTAGACTAGGAATGAATTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14256771 CTTAGACGT-GGAATGAACTCCGTATG
1 CTTAGAC-TAGGAATGAACTCCATATG
14256797 C
1 C
14256798 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Done.