Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 82 of 138
Found at i:14257269 original size:157 final size:160
Alignment explanation
Indices: 14256770--14257292 Score: 448
Period size: 160 Copynumber: 3.3 Consensus size: 160
14256760 AATTTCATAT
* * * ** *
14256770 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCGCTC-A
* * * * * * * * ** *
14256835 CCAG-CCGGAGAGGCAGAATGTGCAAGCTGGGGATCAGCCT-GAT-CCCCTCCACGTGCTGTCGA
65 GCAGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCTCGGTCCCCCTCTGCGTGCTGCCGA
** * ** * * *
14256897 TCATGCTGCTGCAACCCTCGGTCCGGTC-CGA
130 TCCCGCTACCACAACCCTCGATCCGG-CAAGG
* * * * * *
14256928 TCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCGCTCAG
* * * * *
14256993 CTGACCGAAGAGGCATAATGCGCAAGCCGATGATCGGCCTCGGTCCCCCTCTGCGTGCTGCTGGT
66 CAGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCTCGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
14257058 CCTGCTACTAGAACCCTCGGTCCGGCAAGG
131 CCCGCTACCACAACCCTCGATCCGGCAAGG
* * * * * *
14257088 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAGAGGGGCGCGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCGCTCAG
* * * * *
14257153 CAGGCCGGAGAGGCAAAATGGGCAA-CCGGGGATCGGCC-CGGT-CCCCTCTGCGTGTTGCCGAT
66 CAGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCTCGGTCCCCCTCTGCGTGCTGCCGAT
* * * * **
14257215 CCCGTTGCCACAGCCCTCGATCTGGCTGGG
131 CCCGCTACCACAACCCTCGATCCGGCAAGG
* *
14257245 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
14257293 GGCGTGCAGG
Statistics
Matches: 297, Mismatches: 64, Indels: 9
0.80 0.17 0.02
Matches are distributed among these distances:
157 83 0.28
158 89 0.30
159 14 0.05
160 111 0.37
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCGCTCAG
CAGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCTCGGTCCCCCTCTGCGTGCTGCCGAT
CCCGCTACCACAACCCTCGATCCGGCAAGG
Found at i:14257419 original size:158 final size:157
Alignment explanation
Indices: 14256770--14257430 Score: 557
Period size: 158 Copynumber: 4.2 Consensus size: 157
14256760 AATTTCATAT
* *
14256770 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-AGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-CTCA
** * * * * **
14256834 ACCAGCCGGAGAGGCAGAATGTGCAAGCTGGGGATCAG-CCTGATCCCCTCCACGTGCTGTCGAT
65 ACTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGA-CCCCTCTGCGTGCTGTCGAT
* *
14256898 CATGCTG-CTGCAACCCTCGGTCCGGTCCGA
129 CCTGCTGTC-GCAACCCTCGGTCCGG-CTGA
* * * * * * *
14256928 TCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * ** * *
14256993 CTGACCGAAGAGGCATAATGCGCAAGCCGATGATCGGCCTCGGTCCCCCTCTGCGTGCTG-CTGG
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-CGG-ACCCCTCTGCGTGCTGTC-GA
* * * *
14257057 TCCTGCTACTAG-AACCCTCGGTCCGGCAAGG
128 TCCTGCT-GTCGCAACCCTCGGTCCGGC-TGA
* * * * * * ** *
14257088 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAGAGGGGCGCGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * *
14257153 CAGGCCGGAGAGGCAAAATGGGCAA-CCGGGGATCGGCCCGGTCCCCTCTGCGTGTTGCCGATCC
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGACCCCTCTGCGTGCTGTCGATCC
* * * * * * * *
14257217 CGTTGCCACAGCCCTCGATCTGGCTGGG
131 TGCTGTCGCAACCCTCGGTCCGGCT-GA
* * * *
14257245 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCACTCA
* * * * *
14257310 ACTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGG-TCTGACCCAC-CTGCGTGCTATCGAT
65 ACTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGACCC-CTCTGCGTGCTGTCGAT
*
14257373 CCTGCTGTCGCAACCCTCGGTCCGATCTGA
129 CCTGCTGTCGCAACCCTCGGTCCG-GCTGA
*
14257403 TCTTAGAC-TGGAAATGAACTCCGTATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
14257431 TTAGATTGGG
Statistics
Matches: 396, Mismatches: 91, Indels: 32
0.76 0.18 0.06
Matches are distributed among these distances:
157 86 0.22
158 171 0.43
159 27 0.07
160 111 0.28
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGACCCCTCTGCGTGCTGTCGATCC
TGCTGTCGCAACCCTCGGTCCGGCTGA
Found at i:14257433 original size:26 final size:26
Alignment explanation
Indices: 14257404--14257456 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14257394 CCGATCTGAT
14257404 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* ** *
14257430 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14257456 C
1 C
14257457 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14257823 original size:26 final size:26
Alignment explanation
Indices: 14257785--14257837 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14257775 TCGATCCAAT
14257785 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
14257811 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
14257837 C
1 C
14257838 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:14258185 original size:159 final size:158
Alignment explanation
Indices: 14257810--14258188 Score: 395
Period size: 158 Copynumber: 2.4 Consensus size: 158
14257800 AACTCTGTAT
* * * * *
14257810 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCCGACTCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAG
* * * * * ** *
14257875 TCGGTCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGTTCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCCCCTGCAAGCTATCGTTCC
* ** * *
14257940 TACTGCTGCAACCCTCAATTTGGTCTGA
131 CACTGCCACAACCCTCAATCTAGTCTGA
* * * *
14257968 TCTTAGACTAT-GAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCACTAA
1 GCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAA
* * *
14258032 GCCAGCCGGAGAGGCATAATGCGTAAGCCGGGGATCGACTCGATCCCCCTCTGCAAGCTATCAG-
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCCC-CTGCAAGCTATC-GT
* ** *
14258096 TCCCGCTGCCACAACCCTCGGTCTAG-CTAGG
128 TCCCACTGCCACAACCCTCAATCTAGTCT-GA
* ** * *
14258127 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACT
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT
14258189 CGGCCGATCG
Statistics
Matches: 178, Mismatches: 38, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 97 0.54
159 80 0.45
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCCCCTGCAAGCTATCGTTCC
CACTGCCACAACCCTCAATCTAGTCTGA
Found at i:14258698 original size:159 final size:159
Alignment explanation
Indices: 14258461--14258903 Score: 538
Period size: 159 Copynumber: 2.8 Consensus size: 159
14258451 CTGGTCTGAT
* * * * * * *
14258461 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAACCAACCCATTAAATGAGTGTGCAGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATCAGCGTGCGGGCGCTCAG
* * * * * * * *
14258525 CTGGTCGAAAAGGCATAATGCACAAGTCGGGGATCGACCCAGTCCCCCTCTGTGTGCTGTCGGTC
65 CCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTC
*
14258590 CCACTGCCACAACCCTCGGTCCAG-TTGGGG
130 CCACTGCCACAACCCTCGGTCC-GCCTGGGG
*
14258620 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATCAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATCAGCGTGCGGGCGCTCAGC
* *
14258685 CGGTCGGAGAGGCAGAATGCATATGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCC
66 CGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCC
**
14258750 TGCTGCCACAACCCTCGGTCCGCCTGGGG
131 CACTGCCACAACCCTCGGTCCGCCTGGGG
* * * *
14258779 TTTAGACATGGAATGAACTCAC-TATGCCTAAGCCAACCAATGAAA-CGATCGTGCGGGCGCTCA
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATAAAATC-AGCGTGCGGGCGCTCA
* * * *
14258842 GCCGG-CTGGAGAGGTAGAATGCATAAGCCGAGGATCGGCCCGGTCCCCC-CTACGTGCTGTCG
64 GCCGGTC-GGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
14258904 ATCTTGCTGT
Statistics
Matches: 247, Mismatches: 32, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
158 15 0.06
159 230 0.93
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATCAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCC
CACTGCCACAACCCTCGGTCCGCCTGGGG
Found at i:14259416 original size:159 final size:158
Alignment explanation
Indices: 14259147--14259433 Score: 373
Period size: 159 Copynumber: 1.8 Consensus size: 158
14259137 CTGGTCCGAT
* * * * *
14259147 CTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGT
1 CTTAGACTAGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGCCGCTCAGT
* * ** * * *
14259212 CGGTCGGAGAGGCATAATGTGCAAGTCAGGGATTGGCTCGATCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCACAAGTCAGGGATTGACCCGATCCCCC-CTACGTGCTGTCGATCC
14259277 CGCTGCCACAACCCTCGATCCGAATGGGA
130 CGCTGCCACAACCCTCGATCCGAATGGGA
*
14259306 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGCCGCTCAG
1 CTTAGACTA-GGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGCCGCTCAG
* * *
14259370 -CTGGCCGGAGAGGTAGAATGCACAAG-CTGGGTATTGACCCGGTCCCCCCTACGTGCTGTCGAT
65 TC-GGCCGGAGAGGCAGAATGCACAAGTCAGGG-ATTGACCCGATCCCCCCTACGTGCTGTCGAT
14259433 C
128 C
14259434 GTGCTGTCGC
Statistics
Matches: 109, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
158 21 0.19
159 88 0.81
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGCCGCTCAGT
CGGCCGGAGAGGCAGAATGCACAAGTCAGGGATTGACCCGATCCCCCCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCGATCCGAATGGGA
Found at i:14259493 original size:26 final size:26
Alignment explanation
Indices: 14259464--14259516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14259454 CCGGTCTGAT
*
14259464 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14259490 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14259516 C
1 C
14259517 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14259620 original size:184 final size:184
Alignment explanation
Indices: 14259306--14259643 Score: 509
Period size: 184 Copynumber: 1.8 Consensus size: 184
14259296 CCGAATGGGA
*
14259306 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGCCGCTCAGC
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGCCGCTCAGC
* * * *
14259371 TGGCCGGAGAGGTAGAATGCACAAGCTGGGTATTGACCCGGTCCCCCCTACGTGCTGTCGATCGT
66 CGGCCGGAGAGGCAGAATGCACAAGCTGGGTATCGACCCGATCCCCCCTACGTGCTGTCGATCGT
**
14259436 GCTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
131 GCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
14259490 CTTAGAC-TGGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGCCGCTCAG
* * *
14259554 CCGGCCGGAGAGGCAGAATGCACAAGCTGGGTATCGACCCGATTCCCCCTGCGTGTTG-CTGATC
65 CCGGCCGGAGAGGCAGAATGCACAAGCTGGGTATCGACCCGATCCCCCCTACGTGCTGTC-GATC
14259618 GTGCTACCGCAACCCTTGGTCCGGTC
129 GTGCTACCGCAACCCTTGGTCCGGTC
14259644 AAGCACATCT
Statistics
Matches: 137, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
183 2 0.01
184 135 0.99
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.21
Consensus pattern (184 bp):
CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGCCGCTCAGC
CGGCCGGAGAGGCAGAATGCACAAGCTGGGTATCGACCCGATCCCCCCTACGTGCTGTCGATCGT
GCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14261623 original size:158 final size:159
Alignment explanation
Indices: 14261072--14261648 Score: 550
Period size: 159 Copynumber: 3.6 Consensus size: 159
14261062 CCGGCTAAGG
* ** *
14261072 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CTAACCCACTAAACGAGCGTACGG--GTGCT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGTGGATGCGCT
* * * * ** * *
14261133 GAGTCGATCGGAGAGGCAGAATGCATAAGCCGAGGA-CTGACCCAGTCCGCCCCTACATGCTGTC
64 CAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCAGTCC-CCCCTACGTGCTGTC
* *
14261197 GATCCTGCTACTGCAACCCTC-AGTCCGATCCGAT
127 GATCCTGCTGCTGCAACCCTCGA-TCCG-TCTGAT
* * * *
14261231 CTTAGATTGGGAATGCACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGG--GCTCTGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGATGCGCTCA
* * * *
14261294 GCCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTACGTGCTGTCGGT
66 GCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCC-CTACGTGCTGTCGAT
** * * **
14261359 CCTGCTGCCACAACCCTCGGTCCGGCTGGGG
130 CCTGCTGCTGCAACCCTCGATCCGTCT-GAT
* * * * * *
14261390 CTTAGCCAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-G-GTGTGCAGGCGCTC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGATGCGCTC
* * * * * * *
14261452 AACCTATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGAT
65 AGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGAT
*
14261517 CCTACTGCTGCAACCCTCGATCCAGTCTGAT
130 CCTGCTGCTGCAACCCTCGATCC-GTCTGAT
* * *
14261548 CTGAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGATGC-C-CA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGATGCGCTCA
* *
14261611 GCCGACCAGAGAGGCAGGATGCGCGAGCCGGGGATCGA
66 GCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA
14261649 TCGGGTGGTA
Statistics
Matches: 337, Mismatches: 68, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 110 0.33
159 210 0.62
160 11 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGATGCGCTCA
GCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATC
CTGCTGCTGCAACCCTCGATCCGTCTGAT
Found at i:14262827 original size:26 final size:26
Alignment explanation
Indices: 14262789--14262841 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14262779 CCGATCAGAT
** *
14262789 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCTATATG
14262815 CTTAGACAAGGAATGAACTCTATATG
1 CTTAGACAAGGAATGAACTCTATATG
14262841 C
1 C
14262842 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCTATATG
Found at i:14263103 original size:158 final size:158
Alignment explanation
Indices: 14262815--14263105 Score: 363
Period size: 158 Copynumber: 1.8 Consensus size: 158
14262805 ACTCTGTATG
* *
14262815 CTTAGACAAGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCTAGCGCTAAGC
1 CTTAGACAAGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGC
* * *
14262880 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTTAGTGCTACCGATCCT
66 CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTTAATGCTACCGATCCT
14262945 GCTGTCGCAACCCTCGGTCCGGTTTGAT
131 GCTGTCGCAACCCTCGGTCCGGTTTGAT
* * * * * *
14262973 CTTAGACTAGGGATGAACT-TCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTCAA
1 CTTAGACAAGGAATGAACTCT-ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCT-AA
* * * * * * * *
14263037 -CCGGTCAGAGTGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCC-TACATGTTATCGAT
64 GCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTTA-ATGCTACCGAT
14263100 CCTGCT
128 CCTGCT
14263106 ACTGGTCCTG
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.03
158 106 0.95
159 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACAAGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGC
CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTTAATGCTACCGATCCT
GCTGTCGCAACCCTCGGTCCGGTTTGAT
Found at i:14263173 original size:354 final size:354
Alignment explanation
Indices: 14262714--14263366 Score: 895
Period size: 354 Copynumber: 1.8 Consensus size: 354
14262704 ACAAGGCGAA
* * * *
14262714 GATCAGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTCCTGGTCCTGTGACCGCAAGCCTCAGT
1 GATCAGCCTGATCCCCCCTACATGCTATCGATCCTGCTACTGGTCCTGTGACCGCAACCCTCAGT
*
14262779 CCGATCAGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACTCTATATGCCT
66 CCGATCAGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACACTATATGCCT
* * * * *
14262844 AAGCCAACCCATGAAACGAGCGTGCTAGCGCTAAGCCGATCGGAGAGGCAGAATGCGTAAGCCGG
131 AAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGCCGG
* * ** ***
14262909 GGATCAG-CCCGATCCCCCCT-TAGTGCTACCGATCCTGCT-GTCGCAACCCTCGGTCCGGTTTG
196 GGA-CAGACCCAATCCCCCCTGT-GTGCTACCGATCCTGCTACT-GCAACCCTCAATCCGGTCCA
*
14262971 ATCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTCA
258 ATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTCA
14263036 ACCGGTCAGAGTGGCAGAATGCGCAAGCTGGG
323 ACCGGTCAGAGTGGCAGAATGCGCAAGCTGGG
* * *
14263068 GATCGGCCTGGTCCCCCCTACATGTTATCGATCCTGCTACTGGTCCTGCTG-CCGCAACCCTC-G
1 GATCAGCCTGATCCCCCCTACATGCTATCGATCCTGCTACTGGTCCTG-TGACCGCAACCCTCAG
* * * * *
14263131 ATCCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGATATGGAATGAACACTGTATG
65 -TCCGATCAGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACAAGGAATGAACACTATATG
* * *
14263195 CCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGC
128 CCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGC
* * ** * *
14263260 TGGGGACCGACCCAATCCCCCCTGTGTGCTGTCGATCTTGCTACTGCAACCCTCAATCTGGTCCA
193 CGGGGACAGACCCAATCCCCCCTGTGTGCTACCGATCCTGCTACTGCAACCCTCAATCCGGTCCA
14263325 ATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCA
258 ATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCA
14263367 TGAAACAAGC
Statistics
Matches: 258, Mismatches: 35, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
353 4 0.02
354 250 0.97
355 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (354 bp):
GATCAGCCTGATCCCCCCTACATGCTATCGATCCTGCTACTGGTCCTGTGACCGCAACCCTCAGT
CCGATCAGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACACTATATGCCT
AAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGCCGG
GGACAGACCCAATCCCCCCTGTGTGCTACCGATCCTGCTACTGCAACCCTCAATCCGGTCCAATC
TTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTCAACC
GGTCAGAGTGGCAGAATGCGCAAGCTGGG
Found at i:14263438 original size:354 final size:353
Alignment explanation
Indices: 14262725--14263438 Score: 857
Period size: 354 Copynumber: 2.0 Consensus size: 353
14262715 ATCAGCCTGA
* * * *
14262725 TCCCCCCTACGTGCTGTCGATCCTGCTCCTGGTCCTGTGACCGCAAGCCTCAGTCCGATCAGATC
1 TCCCCCCTACATGCTATCGATCCTGCTACTGGTCCTGTGACCGCAACCCTCAGTCCGATCAGATC
*
14262790 TTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACTCTATATGCCTAAGCCAACCCA
66 TTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACACTATATGCCTAAGCCAACCCA
* * * * * * *
14262855 TGAAACGAGCGTGCTAGCGCTAAGCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCG
131 CGAAACGAGCGTGCGAGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCA
* ** *** *
14262920 ATCCCCCCTTAGTGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGGTTTGATCTTAGACTAGGG
196 ATCCCCCCTTAGTGCTACCGATCCTGCTCTCGCAACCCTCAATCCGGTCCAATCTTAGACTAGGA
* * * *
14262985 ATGAACTTCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTCAACCGGTCAGAGTGG
261 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAACC-GTCAGAGAGG
** * **
14263050 CAGAATGCGCAAGCTGGGGATCGGCCTGG
325 CAGAATGCGCAAGCCAGGGATCGACCCAG
* * *
14263079 TCCCCCCTACATGTTATCGATCCTGCTACTGGTCCTGCTG-CCGCAACCCTC-GATCCGGTCTGA
1 TCCCCCCTACATGCTATCGATCCTGCTACTGGTCCTG-TGACCGCAACCCTCAG-TCCGATCAGA
* * *
14263142 TCTTAGACTGGGAATGAACT-TCGTATGCTTAGATATGGAATGAACACTGTATGCCTAAGCCAAC
64 TCTTAGACTGGGAATGAACTCT-GTATGCTTAGACAAGGAATGAACACTATATGCCTAAGCCAAC
* * * *
14263206 CTACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGACC-GA
128 CCACGAAACGAGCGTGCGAGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCAG-
** * *
14263270 CCCAATCCCCCCTGT-GTGCTGTCGATCTTGCTACT-GCAACCCTCAATCTGGTCCAATCTTAGA
192 CCCAATCCCCCCT-TAGTGCTACCGATCCTGCT-CTCGCAACCCTCAATCCGGTCCAATCTTAGA
* * *** *
14263333 CTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCATTCGGGCGCTGGGCC-TACC
255 CTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAACCGT-CA
*
14263397 GAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAG
319 G-AGAGGCAGAATGCGCAAGCCAGGGATCGACCCAG
14263433 TCCCCC
1 TCCCCC
14263439 TCTGCGTGCT
Statistics
Matches: 303, Mismatches: 49, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
352 1 0.00
353 5 0.02
354 293 0.97
355 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (353 bp):
TCCCCCCTACATGCTATCGATCCTGCTACTGGTCCTGTGACCGCAACCCTCAGTCCGATCAGATC
TTAGACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACACTATATGCCTAAGCCAACCCA
CGAAACGAGCGTGCGAGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCA
ATCCCCCCTTAGTGCTACCGATCCTGCTCTCGCAACCCTCAATCCGGTCCAATCTTAGACTAGGA
ATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAACCGTCAGAGAGGC
AGAATGCGCAAGCCAGGGATCGACCCAG
Found at i:14264179 original size:159 final size:158
Alignment explanation
Indices: 14263797--14264272 Score: 406
Period size: 159 Copynumber: 3.0 Consensus size: 158
14263787 ATCCCGCTAC
* * *
14263797 CAGTCCTGCTGCCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * ** **
14263862 AGCCAACCCAAGAAACAAGCGTGCAGGTGCTCAGCCGGTCGAAGAGGAAGAATGTGCAAGCTGGG
66 AGCCAACCCACGAAACAAGCATGCAGGTGCTCAGCCGCTCGAAGAGGAAGAATACGCAAGCCAGG
*
14263927 GATGAACCCGGTCCCCCCTGCCTGCTGT
131 GATGAACCCAGTCCCCCCTGCCTGCTGT
* * * ** * * * * ** *
14263955 CAATCTTC-CTACCGTAACCCTTGGTCTGGTTTGATCTTAGAC-TGGAAATGAACTTCGTATGCC
1 CAGTC-CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGG-AATGAACTCCGTATGCC
* * * * * * * * *
14264018 TAAGTCAACCCACGAAACAAGTATTCGGGTGCTGAGCCTGCT-GGAGAGGCATAATACGTAAGCC
64 TAAGCCAACCCACGAAACAAGCATGCAGGTGCTCAGCC-GCTCGAAGAGGAAGAATACGCAAGCC
* *
14264082 AGGGATCG-ACCCAGTCCCTCTCTGCGTGCTGT
128 AGGGAT-GAACCCAGTCCC-CCCTGCCTGCTGT
* * *
14264114 CGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTA
1 CAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
*** * * * * * * *
14264179 AGCCAACCCACGAAATGGGCATGCAGGCGCTCAACCAAC-CGAAGAGGCAGAATGCGTAAGCCAA
66 AGCCAACCCACGAAACAAGCATGCAGGTGCTCAGCC-GCTCGAAGAGGAAGAATACGCAAGCCAG
* *
14264243 GGATCG-ACCCTGTCCCCCCTGCATGCTGT
130 GGAT-GAACCCAGTCCCCCCTGCCTGCTGT
14264272 C
1 C
14264273 GATCTTACTG
Statistics
Matches: 242, Mismatches: 68, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.01
158 116 0.48
159 121 0.50
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAACAAGCATGCAGGTGCTCAGCCGCTCGAAGAGGAAGAATACGCAAGCCAGG
GATGAACCCAGTCCCCCCTGCCTGCTGT
Found at i:14264356 original size:26 final size:26
Alignment explanation
Indices: 14264318--14264370 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14264308 TCTGATCTGA
* *
14264318 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14264344 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14264370 C
1 C
14264371 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14264684 original size:159 final size:158
Alignment explanation
Indices: 14264344--14264756 Score: 515
Period size: 158 Copynumber: 2.6 Consensus size: 158
14264334 AGTCCGTATG
* *
14264344 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGA-ATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
14264408 TCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCTTTCTACGTGCTATCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCTCTACGTGCTATCGATCC
* ** *
14264473 TGCTATCGCAACCCTCGATCTGATTTGAT
130 TGCTACCGCAACCCTCGATCCAATCTGAT
* *
14264502 CTTAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
14264567 CGGTCGGAGAGGCATAATGTGCAAGTCGGGGATCGGTCTGATCCCCCTCTACGTGCTATCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGAT-CCCCTCTACGTGCTATCGATCC
*
14264632 TGCTACCGCAACCCTCGGTCCAATCTGAT
130 TGCTACCGCAACCCTCGATCCAATCTGAT
* * * * *
14264661 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAG-GTGCGGGCGCTCAGC
1 CTTAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
14264725 CGACCAGAGAGACAGGATGCGCAAGCCGGGGA
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGA
14264757 TCGAACGGGT
Statistics
Matches: 217, Mismatches: 36, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
157 2 0.01
158 127 0.59
159 88 0.41
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCTCTACGTGCTATCGATCCT
GCTACCGCAACCCTCGATCCAATCTGAT
Found at i:14265875 original size:158 final size:159
Alignment explanation
Indices: 14265352--14265906 Score: 543
Period size: 158 Copynumber: 3.5 Consensus size: 159
14265342 GTGGCTCAAA
* * * * *
14265352 ATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCACTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
14265417 GCCAGTCGGAA-AGGCAAAATGAGCAAGCCAGGGATTGGCCCGGTCCCCCCTACGTGCTGTTGAT
66 GTCAGCCTGAAGAGGCAAAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
*** * * *
14265481 CCTACTGCTGTAACCCTCGGTCTAGTCTA
131 CCTACTGCCAAAACCCTCAGTCTGGTCTG
* * *
14265510 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** ** * * **
14265575 G-CCG-ATCGAAGAGGCATAATGCATAAGCTGAGGATCGAG-CCAATCCCCCTTTGTGTGCTGTC
66 GTCAGCCT-GAAGAGGCAAAATGCGCAAGCCAAGGATCG-GCCCGATCCCCC-CTACGTGCTGTC
** *
14265637 -AGTCCCGCTGCCAAAACCCTCAGTCCGG-CTAG
128 GA-TCCTACTGCCAAAACCCTCAGTCTGGTCT-G
** ** * * *
14265669 GGCTTAGACACGGAATGAACTCCTTATGCCTAAG-CTAACCCACAAAACGGGCGTGCGGGCGCTC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTC
*
14265733 AGTCAGCCTG-AGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTACGTGCTGTCGA
65 AGTCAGCCTGAAGAGGCAAAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTACGTGCTGTCGA
* *
14265797 TCCTACTACCACAACCCTCAGTCTGGTCTG
130 TCCTACTGCCAAAACCCTCAGTCTGGTCTG
* * *
14265827 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCGTGTGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
*
14265892 GTTAGCC-GAAGAGGC
66 GTCAGCCTGAAGAGGC
14265907 TGGCCGAAGA
Statistics
Matches: 312, Mismatches: 71, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 185 0.59
159 117 0.38
160 3 0.01
161 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GTCAGCCTGAAGAGGCAAAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
CCTACTGCCAAAACCCTCAGTCTGGTCTG
Found at i:14266211 original size:26 final size:26
Alignment explanation
Indices: 14266182--14266234 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14266172 CCGGTCTGAT
14266182 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14266208 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14266234 C
1 C
14266235 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14273055 original size:158 final size:157
Alignment explanation
Indices: 14272680--14273061 Score: 376
Period size: 157 Copynumber: 2.4 Consensus size: 157
14272670 CTGCCGATCC
* * * * * * * * *
14272680 TGCTGCTGGTCCTACTATCGTAACCCTC-GATCGGGTTTGATCTTAGACTGTGAATAAACTCCGT
1 TGCTGCCGATCCTGCTATCGTAACCCTCAG-GCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
** * * * *
14272744 ATGCCTAATTCAACCTACAAAATGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCT
65 ATGCCTAAGCCAACCTACAAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCA
*
14272809 AGTGGGGACCGACCTGATCCCCCCTGCG
130 AGTGGGGACCGACCCGATCCCCCCTGCG
* * *** * *
14272837 TGCTGTCGATCCTGCTA-CTGCAA-CC-CATGGTCTAATCCGATCTTAGATTGGGAATGAACTCC
1 TGCTGCCGATCCTGCTATC-GTAACCCTCA-GG-CCGGTCTGATCTTAGACTGGGAATGAACTCC
** * * * *
14272899 ATATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGTGCTGAGTCGGCCGGAGAGGCAGAATGCG
63 ATATGCCTAAGCCAACCTACAAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCG
* * * * * *
14272964 CAAGCTGGGTATCGGCCCGATCTCTCTTGCG
128 CAAG-TGGGGACCGACCCGATCCCCCCTGCG
14272995 TGCTGCCGATCCTGCTATCGTAACCCTCAGGCCGGTCTGATCTTAGACTGGGAATGAACTCCATA
1 TGCTGCCGATCCTGCTATCGTAACCCTCAGGCCGGTCTGATCTTAGACTGGGAATGAACTCCATA
14273060 TG
66 TG
14273062 GTTAGACTGG
Statistics
Matches: 176, Mismatches: 41, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
155 1 0.01
156 3 0.02
157 96 0.55
158 69 0.39
159 5 0.03
160 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (157 bp):
TGCTGCCGATCCTGCTATCGTAACCCTCAGGCCGGTCTGATCTTAGACTGGGAATGAACTCCATA
TGCCTAAGCCAACCTACAAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAA
GTGGGGACCGACCCGATCCCCCCTGCG
Found at i:14273808 original size:26 final size:26
Alignment explanation
Indices: 14273770--14273822 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14273760 GGCTGAAAAT
14273770 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
14273796 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
14273822 C
1 C
14273823 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14274211 original size:159 final size:157
Alignment explanation
Indices: 14273795--14274296 Score: 480
Period size: 159 Copynumber: 3.2 Consensus size: 157
14273785 AACTCTGTAT
* *
14273795 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGTGCTCA
* * * * * * *
14273859 GCCGGCCGGAGAGGTAGAATGCACAAGCTGAGGATCGGCCCGGTCACCC-CGGTGTGCTATCAAT
65 ACCGGCCGAAGAGGCAGAATGCACAAGCTGAGGATC-GCCCGGTCCCCCTCTGTGTGCTGTCGAT
** ** * *
14273923 CCTTTTGCTGCAACCCTTGGTCCAGTCTGA
129 CCTACTGCCACAACCCTCGGT-CAGGCTGA
* * * * * * *
14273953 TCTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCATTAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCA
* * * * * *
14274017 ATCGGTCGAAGAAGCATAATGCACAAGCTGAGGATCAGCCCGCTCCCCCTCTGTGTGCTGTCGGT
65 ACCGGCCGAAGAGGCAGAATGCACAAGCTGAGGATC-GCCCGGTCCCCCTCTGTGTGCTGTCGAT
* *
14274082 CCTACTGCCACAACCCTCGGTCTGGCTGGG
129 CCTACTGCCACAACCCTCGGTCAGGCT-GA
* *
14274112 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAA
** * * *
14274177 CCGGCCGAAGAGGCAGAATGCGTAAGC-CAGGGATCGACCCGGT-CCCCT-TGCGTGCCG-CTGA
66 CCGGCCGAAGAGGCAGAATGCACAAGCTGA-GGATCG-CCCGGTCCCCCTCTGTGTGCTGTC-GA
* *
14274238 TCCTACTGCCCCAACCCTCGGTCCGGTCTGA
128 TCCTACTGCCACAACCCTCGGTCAGG-CTGA
* *
14274269 TCTTAGA-TTGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTTCGTATGC
14274297 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 56 0.20
158 104 0.38
159 113 0.41
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAA
CCGGCCGAAGAGGCAGAATGCACAAGCTGAGGATCGCCCGGTCCCCCTCTGTGTGCTGTCGATCC
TACTGCCACAACCCTCGGTCAGGCTGA
Found at i:14274306 original size:26 final size:26
Alignment explanation
Indices: 14274270--14274322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14274260 CCGGTCTGAT
*
14274270 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14274296 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14274322 C
1 C
14274323 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14274982 original size:26 final size:26
Alignment explanation
Indices: 14274941--14274993 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14274931 CTGGTCTGAT
14274941 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14274967 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14274993 C
1 C
14274994 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14275950 original size:673 final size:670
Alignment explanation
Indices: 14273795--14277208 Score: 3302
Period size: 673 Copynumber: 5.0 Consensus size: 670
14273785 AACTCTGTAT
* * *
14273795 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
* * * * * ** * * * * *
14273860 CCGGCCGGAGAGGTAGAATGCACAAGCTGAGGATCGGCCCGGTCACCCCGGTGTGCTATCAATCC
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCC
** * * * *
14273925 TTTTGCTGCAACCCTTGGTCCAGTCTGATCTTAGACTAGGAATGAACT-TCGTATGCATAAGTCA
131 TACTACCGCAACCCTCGGTCCA-TCTGATCTTAGACTGGGAATGAACTCT-GTATGCATAAGTCA
** ** * ** * * * * * *
14273989 ACCCATTAAACAAGCGTGCGGGCGCTGAATCGGTCGAAGAAGCATAATGCACAAGCTGAGGATCA
194 ACCCACGAAATGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCG
* * * ** *** *
14274054 GCCCGCTCCCCCTCTGTGTGCTGTCGGTCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGA
259 GCCCGGTCCCCCTCTGCGTGCTGTAGGTCCCGCTGCCACAACCCTCGGTCCAACTAGGGCTTAGA
* * * *
14274119 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCA-ACCG-GC
324 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCCGTG-
* * * * * *
14274182 CGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGGT-CCCCTTGCGTGCCG-CTGATCCTACT
388 -GGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTC-GATCCTACT
* * *
14274245 GCCCCAACCCTCGGTCCGG-TCTGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGGA
450 GCCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGA
* * * * * * *
14274309 TGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCCAACCGACTGGAGAGGC
514 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGC
* * * * *
14274374 ATAATGCGCAAG-CTGGGGATCAACCCGGTCCCCCTCTTCGGGCTGTCGATCCCACTGTCGGTCC
579 ATAATGCGCAAGTC-GGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCC
* * * *
14274438 TGCTACCATAACCCTCAGTCCGGCTGGG
643 TACTGCCACAACCCTCGGTCCGGCTGGG
*
14274466 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCGTGC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGA-GCGCTCA
* * ** * * * * *
14274530 GCCGACTAGAGAGGTAGAATGCGCAAGTCGGGGATC-AGTCTGGTCCCCCCTGCGTGTTGTAGAT
65 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-TCCGGTCCCCCCTGCGTGCTGTCGAT
* ** * * * *
14274594 CCTGCTATTGTAACCTTCGATCCCATCTGATCTTAGACTGGCAATGAACTCTGTATGCATAAGTC
129 CCTACTACCGCAACCCTCGGT-CCATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
* * * * * *
14274659 AACCGACGAAATGAGCGTTCAGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATC
193 AACCCACGAAATGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATC
* * *** * * * * *
14274724 GGCCCGGTCCCCCTTTGCGTACTACCGATCCCGCTGCCACAGCCCTCAGTCCAATTGGGGCTTAG
258 GGCCCGGTCCCCCTCTGCGTGCTGTAGGTCCCGCTGCCACAACCCTCGGTCCAACTAGGGCTTAG
* * * * * * *
14274789 ACATGGAATGAACTACCTGTGCCTAAGCCAACACACGAAACGGGTGTGCAGGTACGCAGCAG-GC
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GG-GCGC-TCAGTCC
* * * * *
14274853 -T-AGAGGGGCA-AATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTAC
385 GTGGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTAC
* * *
14274915 TGACGCAACCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
449 TGCCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGG
** * *
14274979 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGAACGCTCAGTCGGTCGGAGAGG
513 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT--G--CG----GGCGCTC----A-G
* * * * * * ** *
14275044 TTGGCTGGAGAGGCATAATGCGCAAGTCAGGGATTAGCCCGATCCCCCACTGTGTACTGTCGATC
565 CTGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATC
* *
14275109 CCGCTACCGGTCCTACTGCCACAACCCTCGATCCGGCTGGG
630 CCGCTGCCGGTCCTACTGCCACAACCCTCGGTCCGGCTGGG
* * * *
14275150 GCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAACCCACG-AATAGAACGTGCAAGCGCCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-GAGCGTGCGAGCGCTCA
* * * * *
14275214 GCTGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGTTCGATCCCCCACTGCGTGCTGTCGAT
65 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCC-CTGCGTGCTGTCGAT
** *
14275279 TGTACTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
129 CCTACTACCGCAACCCTCGGTCC-ATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
* * * *
14275344 AACCCACGAAATGAGCGTACGGGCGCTGAGCCGATTGAAAAGGCACAATGCGTAAGCCGGGGATC
193 AACCCACGAAATGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATC
** * * * *
14275409 GGCATGGTCCCCCTTTGCTTGCTGTAGGTCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAG
258 GGCCCGGTCCCCCTCTGCGTGCTGTAGGTCCCGCTGCCACAACCCTCGGTCCAACTAGGGCTTAG
*
14275474 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAAACGGGCGTGCGGGCGCTCAGTCCGT
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACGGGCGTGCGGGCGCTCAGTCCGT
* * * ** * *
14275539 GGGAGAGGCAGAATGCGCAATCTAGGGATCGGCCCGGTCCCCCCTGCATGCTACCGATCTTGCTG
387 GGGAGAGGCAGAATGCGCAAGC-AGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTG
* * * * * *
14275604 TCGTAACCCTCGGTTCGGTTCAATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGGGACG
451 CCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATG
* * ** *
14275669 AACTCCGTATGTCGAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCGGCGAGGCAT
516 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAT
* * * * * *
14275734 AATGTGCAAGTCGGGGATCAGCCCGGT-CCCCTCTGCATGCTGCCGATCCCGCTGCCAGTCTTAC
581 AATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTAC
* *
14275798 TGCCACAACCCTTGGTCCGGCTAGG
646 TGCCACAACCCTCGGTCCGGCTGGG
* * * **
14275823 GCTTAGACATGGGATGAACTCTGTATGCCTAAGCCAACCCACGAATTGAGCGCACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
* * *
14275888 CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGATCCGATCCCCCACTACGTGCTGTCGATC
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCC-CTGCGTGCTGTCGATC
* * *
14275953 CTACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
130 CTACTACCGCAACCCTCGGTCC-ATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
* * * *
14276018 ACCCACGAAATGAGCGTACGGGCGCTAAGCTGATCGAAGAGGCATAATGCGCAAGCTGGGGATCA
194 ACCCACGAAATGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCG
* * * * *
14276083 ACCCGGTCCCCCTCTGCGTGCTGCAAGTCCCGCTGCCACAACCATCAGTCCAACTAGGGCTTAGA
259 GCCCGGTCCCCCTCTGCGTGCTGTAGGTCCCGCTGCCACAACCCTCGGTCCAACTAGGGCTTAGA
* * **
14276148 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAAACGGGCGTGCGAGCGCTCAGTTGGTG
324 CATGGAATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACGGGCGTGCGGGCGCTCAGTCCGTG
* * * * **
14276213 GGAGAGGCAGAATACGCAAGCCAGGGATTGGCCCGATCCCCCTTGCGTGCTGTCGATCTTGTTGC
388 GGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGC
* * * * ** * **
14276278 CGTAACCCTCGATCCGGTCCGATCTTAGGCTAAGAATGAACTTTGTATGCTTAGACTAGGGACAA
452 CGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGA
* * * * * *
14276343 ATTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTTGGCCGAAGAGGCAGA
517 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCATA
** * * * * ** *
14276408 ATGCATAAGCCGAGGATC-GACTCGTTCCCCC-CTACGTGCTACCGATCCTGCTGCC-GTAACCC
582 ATGCGCAAGTCGGGGATCAG-CCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGT---CC
* * ** * * **
14276470 TCGGTCTGATCCGATCTTAGACTGAGAGT--GAACTTCGTAT
643 T---ACTG--CC-A-C-AACCCT-CG-GTCCG-GC-T-G-GG
* * * ** * * *
14276510 GCTTAGAC-TAGGGACGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCA
* * * * * * *
14276574 GCTGGCCGGGGAGGCAGAATGCACAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATC
65 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATC
* * ** *
14276639 TTGCTACCGCAACCCTCGGTCCAGTCCCATCTTAGACTGGGAATTAACTCTGTATGCATAAGTCA
130 CTACTACCGCAACCCTCGGTCCA-TCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
* * * * * * * *
14276704 ACCCATGAAATGAGCGTGCGGTCGCTGAGCCGGTCGAAGAGGCGTAAAGCGCAAGCCGGAGATTG
194 ACCCACGAAATGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCG
* * * * *
14276769 GCTCGGTCCCCCTCTGCGTG-T-TACCGGTCCCGCTACCACAACCCTCGGTCCAGCTCGAGCTTA
259 GCCCGGTCCCCCTCTGCGTGCTGTA--GGTCCCGCTGCCACAACCCTCGGTCCAACTAGGGCTTA
* *
14276832 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGTGTGCGGGCGCTCAGT-CGA
322 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCCG-
** * * * * * * *
14276896 CCGGAGAGGTAGAAAGCGTAAGCCGAGGACCTGTCCGAT-CCCCCTGCGTGCTGTCGATCCTACT
386 TGGGAGAGGCAGAATGCGCAAGCAG-GGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACT
* * * *
14276960 GCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGGA
450 GCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTAGGGA
* * *
14277024 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAG-TCGGCCAGAGAGG
514 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT-GGCCGGAGAGG
* * * *
14277088 CATAATGCGTAAGTCAGGGATCAGCACGGTCCCCCTCTACGTGCTGTCGATCCCACTGCCGGTCC
578 CATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCC
* * * *
14277153 TGCTACCATAACCCTCGGACCGGCTGGG
643 TACTGCCACAACCCTCGGTCCGGCTGGG
*
14277181 GCTTAGACATAGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
14277209 ATAAAAAAAT
Statistics
Matches: 2251, Mismatches: 420, Indels: 144
0.80 0.15 0.05
Matches are distributed among these distances:
670 22 0.01
671 437 0.19
672 12 0.01
673 603 0.27
674 49 0.02
675 9 0.00
677 1 0.00
678 5 0.00
679 8 0.00
680 4 0.00
681 1 0.00
682 1 0.00
683 18 0.01
684 341 0.15
685 280 0.12
686 230 0.10
687 228 0.10
688 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (670 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCC
TACTACCGCAACCCTCGGTCCATCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
CCACGAAATGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGC
CCGGTCCCCCTCTGCGTGCTGTAGGTCCCGCTGCCACAACCCTCGGTCCAACTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCCGTGGGA
GAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCA
ACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCATAATGC
GCAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTACTGCCA
CAACCCTCGGTCCGGCTGGG
Found at i:14276305 original size:159 final size:158
Alignment explanation
Indices: 14275797--14276327 Score: 480
Period size: 159 Copynumber: 3.3 Consensus size: 158
14275787 GCCAGTCTTA
* * ** *
14275797 CTGCCACAACCCTTGGTCCGG-CTAGGGCTTAGACATGGGATGAACTCTGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGATCCGGTC-AGATCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * *
14275861 CCACGAATTGAGCGCACGAGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAT
65 CCACGAAATGAGCGTACGAGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
* * *
14275926 CCGATCCCCCACTACGTGCTGTCGATCCTA
130 CCGATCCCCC-TTGCGTGCTGTCGATCCTG
* * * *
14275956 CTGCCACAACCCTCGGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAAC
1 CTGCCACAACCCTCGATCCGGTCAGATCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAAC
* * * * * ** *
14276020 CCACGAAATGAGCGTACGGGCGCTAAGCTGATCGAAGAGGCATAATGCGCAAGCTGGGGATCAAC
65 CCACGAAATGAGCGTACGAGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
* * *
14276085 CCGGTCCCCCTCTGCGTGCTG-CAAGTCCCG
130 CCGATCCCCCT-TGCGTGCTGTCGA-TCCTG
* ** ** **
14276115 CTGCCACAACCATC-AGTCC-AACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 CTGCCACAACCCTCGA-TCCGGTC-AGATCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * * * * * * *
14276178 CCCACCAAAACGGGCGTGCGAGCGCTCAGTTGGTGGGAGAGGCAGAATACGCAAGCCAGGGATTG
64 CCCA-CGAAATGAGCGTACGAGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
* *
14276243 GCCCGATCCCCCTTGCGTGCTGTCGATCTTG
128 ACCCGATCCCCCTTGCGTGCTGTCGATCCTG
* ** * * * *
14276274 TTGCCGTAACCCTCGATCCGGTCCGATCTTAGGC-TAAGAATGAACTTTGTATGC
1 CTGCCACAACCCTCGATCCGGTCAGATCTTAGACAT-GGAATGAACTCTGTATGC
14276328 TTAGACTAGG
Statistics
Matches: 289, Mismatches: 71, Indels: 24
0.75 0.18 0.06
Matches are distributed among these distances:
158 5 0.02
159 223 0.77
160 61 0.21
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTGCCACAACCCTCGATCCGGTCAGATCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
CACGAAATGAGCGTACGAGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACC
CGATCCCCCTTGCGTGCTGTCGATCCTG
Found at i:14276465 original size:184 final size:184
Alignment explanation
Indices: 14276157--14276676 Score: 646
Period size: 184 Copynumber: 2.8 Consensus size: 184
14276147 ACATGGAATG
* * * **
14276157 AACTCCCTATGCCTAAGCCAACCCACCAAAACGGGCGTGCGAGCGCTCAGTTGGTGGGAGAGGCA
1 AACTCCATATGCCTAAGCCAACCCA-TAAAACGAGCGTGCGAGCGCTCAGTTGGCCGGAGAGGCA
* * * * * * *
14276222 GAATACGCAAGCC-AGGGATTGGCCCGATCCCCCTTGCGTGCTGTCGATCTTGTTGCCGTAACCC
65 GAATGCACAAGCCGA-GGATCGACCCGATCCCCCCTGCGTGCTGCCGATCTTGCTGCCGTAACCC
* * *
14276286 TCGATCCGGTCCGATCTTAGGCTAAGAATGAACTTTGTATGCTTAGACTAGGGACA
129 TCGGTCCGGTCCGATCTTAGACTAAGAATGAACTTCGTATGCTTAGACTAGGGACA
* * * *
14276342 AATTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTTGGCCGAAGAGGCAG
1 AACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGAGCGCTCAGTTGGCCGGAGAGGCAG
* * * * * *
14276407 AATGCATAAGCCGAGGATCGACTCGTTCCCCCCTACGTGCTACCGATCCTGCTGCCGTAACCCTC
66 AATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCTTGCTGCCGTAACCCTC
* * * * *
14276472 GGTCTGATCCGATCTTAGACTGAGAGTGAACTTCGTATGCTTAGACTAGGGACG
131 GGTCCGGTCCGATCTTAGACTAAGAATGAACTTCGTATGCTTAGACTAGGGACA
* * * *
14276526 AACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTTAGCTGGCCGGGGAGGCAG
1 AACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGAGCGCTCAGTTGGCCGGAGAGGCAG
* * * * *
14276591 AATGCACAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCTTGCTACCGCAACCCTC
66 AATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCTTGCTGCCGTAACCCTC
* *
14276656 GGTCCAGTCCCATCTTAGACT
131 GGTCCGGTCCGATCTTAGACT
14276677 GGGAATTAAC
Statistics
Matches: 283, Mismatches: 51, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
184 259 0.92
185 24 0.08
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
AACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGAGCGCTCAGTTGGCCGGAGAGGCAG
AATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCTTGCTGCCGTAACCCTC
GGTCCGGTCCGATCTTAGACTAAGAATGAACTTCGTATGCTTAGACTAGGGACA
Found at i:14276912 original size:159 final size:157
Alignment explanation
Indices: 14276510--14277004 Score: 378
Period size: 159 Copynumber: 3.1 Consensus size: 157
14276500 AACTTCGTAT
* * *
14276510 GCTTAGACTAGGG-ACGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTTA
1 GCTTAGACT-GGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
14276574 GCTGGCCGGGGAGGCAGAATGCACAAGTC-GAGGATCGACCCGGTCCCCCCTGCGTGCTGCCAAT
65 GC-GGCCGGAGAGG-AGAAAGCGCAAGCCGGAGGATCGACCCGGTCCCCCCTGCGTGCTACCAAT
** *
14276638 CTTGCTACCGCAACCCTCGGTCCAGTCCCA
128 CCCGCTACCACAACCCTCGGTCCAGTCCCA
* * ** * * * * *
14276668 TCTTAGACTGGGAATTAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGTCGCTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * **
14276733 CCGGTCGAAGAGGCGTAAAGCGCAAGCCGGA-GATTGGCTCGGTCCCCCTCTGCGTGTTACCGGT
66 -CGGCCGGAGAGGAG-AAAGCGCAAGCCGGAGGATCGACCCGGTCCCCC-CTGCGTGCTACCAAT
*
14276797 CCCGCTACCACAACCCTCGGTCCAG-CTCGA
128 CCCGCTACCACAACCCTCGGTCCAGTC-CCA
* * * *
14276827 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGTGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * ** *
14276891 GTCGACCGGAGAGGTAGAAAGCGTAAGCC-GAGGACCTG-TCCGAT-CCCCCTGCGTGCTGTCGA
65 G-CGGCCGGAGAGG-AGAAAGCGCAAGCCGGAGGATC-GACCCGGTCCCCCCTGCGTGCTACCAA
** * * * *
14276953 TCCTACTGCCGCAACCCTCGATCC-GATCCGA
127 TCCCGCTACCACAACCCTCGGTCCAG-TCCCA
*
14276984 TCTTAGACTGGGAATGAACTC
1 GCTTAGACTGGGAATGAACTC
14277005 TGTATGCTTA
Statistics
Matches: 262, Mismatches: 62, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
156 2 0.01
157 54 0.21
158 89 0.34
159 114 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CGGCCGGAGAGGAGAAAGCGCAAGCCGGAGGATCGACCCGGTCCCCCCTGCGTGCTACCAATCCC
GCTACCACAACCCTCGGTCCAGTCCCA
Found at i:14277021 original size:26 final size:26
Alignment explanation
Indices: 14276985--14277037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14276975 CCGATCCGAT
*
14276985 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14277011 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14277037 C
1 C
14277038 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14283377 original size:26 final size:26
Alignment explanation
Indices: 14283341--14283393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14283331 CCGGTCCGAT
* *
14283341 CTTAGACTGGGAATGAAGTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14283367 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14283393 C
1 C
14283394 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14283588 original size:26 final size:26
Alignment explanation
Indices: 14283550--14283602 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14283540 CTGATCCAAT
*
14283550 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14283576 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14283602 C
1 C
14283603 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14284087 original size:26 final size:26
Alignment explanation
Indices: 14284051--14284103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14284041 CCGGTCTGAT
14284051 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
* *
14284077 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
14284103 C
1 C
14284104 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:14284649 original size:710 final size:708
Alignment explanation
Indices: 14283181--14284957 Score: 2069
Period size: 710 Copynumber: 2.5 Consensus size: 708
14283171 AACTTTGTAC
* ** * * * * *
14283181 GCTTGGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
** * ** * * * **
14283246 TTAGTCGGAGAGGCAGAATGCGCAAGTCAATGACCGACCCGATCCCCCCCTGCGTCCTGGGGATC
66 TCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGT-CCCCCCTGCGTGCTGCCGATC
* * * **
14283311 TTGCTG-CAGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAGTTTGTATGCTTAGACT
130 CTGCTGCCA-CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
14283375 GGGGATGAACTTCGTATGCCTAAGTCAACCCACGAATCGAA-CGTGCGGGCGCTCAGCCGGCTGG
194 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTACGGGCGCTCAG-CGACCGG
* * * * * * **
14283439 AAAGGCCGGTCGAAGAGGCAAAATGCATAAGTCAGGGATCGGCCCGATCCCCCCTATGTGCTGTC
257 AGAGGCCGATCG-AGAGGCAAAATGTACAAGTCAGGGATCAGCCCGATCCCCCCTACGTGCTACC
*
14283504 GATCCTACTGCTGGTCCTGCTGCCACAACCCTCAGTCTGATCCAATCTTAGACTAGGAATGAACT
321 GATCCTACTGCTGGTCCTGCTGCCACAACCCTCAGTCAGATCCAATCTTAGACTAGGAATGAACT
* *
14283569 TCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGCGTACGGGC
386 TCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGC
* * * *** * *
14283634 GCTCAGCCAACCGGAAAGGCGGAATGCACAAGTAGGGGATTGGCTCGGTCCCCCCTGCGTGCTAT
451 GCTCAGCCAACCGAAAAGGCAGAATGCACAAGTAGAGGACCAGCCCGATCCCCCCTGCGTGCTAT
* *
14283699 CAATCCTGCTGTCGCAACCCTCAGTCCAGTTCGATCTTAGACTAAGAATGAACTCCGTATGCCCA
516 CAATCCTGCTATCGCAACCCTCAGTCCAGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCCA
* * ** * * **
14283764 AGTCAACCCACGAAATGAGCGTACGGGCGTTGACCCGATCGAAGAGTTATAATGCGCAAGTCGGG
581 AGTCAACCCACAAAACGAGCGTACGGGCCCTGACCCAACCGAAGAGGCATAATGCGCAAGTCGGG
* * * * * * * * *
14283829 GATCGGCCCGATCCCCCTCTGCGTATTGTCGGTCCCGCTACCACAACCCTCAGTTCGACTGGG
646 GATCGGCCCAATCCCACTCTGCATACTGCCGATCCCACTACCACAACCATCAGTCCGACTGGG
* *
14283892 GCTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
* ** *
14283957 TCGGCCGAAGAGGCAGAATGAACAAG-CTAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
66 TCGGCCGGAGAGGCAGAATGCGCAAGTC-AGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATC
* * * * *
14284021 CTGCTGCCATAACCCTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGATTG
130 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
14284086 GGGATGAACTCCGTATGCCTAAGTGAACCCATGAAACAAGCGTACGGGCGCTCAGTCGATCGGAG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAG-CGACCGGAG
* * * *
14284151 AGGCCGATCAGAGAGGCAGAATGTACAAGTCAAGGATCAGCTCGATCCCCCTTACGTGCTACCGA
259 AGGCCGATC-GAGAGGCAAAATGTACAAGTCAGGGATCAGCCCGATCCCCCCTACGTGCTACCGA
* * ** * ** *
14284216 TCTTACTGCTGGTCCTGCTGTCGTAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAAC-T
323 TCCTACTGCTGGTCCTGCTGCCACAACCCTCAGT-CAGATCCAATCTTAGACTAGGAATGAACTT
* *
14284279 CTGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACCGAGCGTGCGGGC
387 C-GTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGC
** * * *
14284344 GCTCAGCTGACCGAAAAGGCAGAATGCGCAAGTTGAGGACCAGCCCGATCCCCCCTGCGTGTTAT
451 GCTCAGCCAACCGAAAAGGCAGAATGCACAAGTAGAGGACCAGCCCGATCCCCCCTGCGTGCTAT
* * * * ** *
14284409 CGATCCTGCTATCGTAACCCTCGGT-CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
516 CAATCCTGCTATCGCAACCCTCAGTCCAG-TCCGATCTTAGACTAAGAATGAACTCCGTATGCCC
* ** *
14284473 AAGTCAACCCACAAAACGAGTGTTTGGGCCCTGAGCCAACCGAAGAGGCATAATGCGCAAGTCGG
580 AAGTCAACCCACAAAACGAGCGTACGGGCCCTGACCCAACCGAAGAGGCATAATGCGCAAGTCGG
* * * *
14284538 GGATCGGCCCAATCCCACTCTGCATGCTGCCGATCCTACTGCCACAACCATCGGTCCGACTGGG
645 GGATCGGCCCAATCCCACTCTGCATACTGCCGATCCCACTACCACAACCATCAGTCCGACTGGG
**
14284602 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
* * * * * * *
14284667 GCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATC-ATTCGGGTCCCCCTTACGTGCTGTCGATC
66 TCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGA-CCCGGTCCCCCCTGCGTGCTGCCGATC
* * * * *
14284731 CTACTGCCGCAACCCTCGATACGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGTG
130 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
** *
14284796 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGGGCTCCA-CGAACCGGA
195 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCT-CAGCG-ACCGGA
* * * * *
14284860 GAGGCCGATCGGAGAGGCATAATGTGCAAGTCAGGGATCAG-CCTAGTCCCCTTCTACGTGCTGC
258 GAGGCCGATC-GAGAGGCAAAATGTACAAGTCAGGGATCAGCCCGA-TCCCC-CCTACGTGCTAC
* ** * *
14284924 TGATCCCGCTACTGGTCCTGTTGCCACAACCCTC
320 CGATCCTACTGCTGGTCCTGCTGCCACAACCCTC
14284958 GGTCCGGCTG
Statistics
Matches: 890, Mismatches: 163, Indels: 26
0.82 0.15 0.02
Matches are distributed among these distances:
709 10 0.01
710 753 0.85
711 127 0.14
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (708 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCGACCGGAGAG
GCCGATCGAGAGGCAAAATGTACAAGTCAGGGATCAGCCCGATCCCCCCTACGTGCTACCGATCC
TACTGCTGGTCCTGCTGCCACAACCCTCAGTCAGATCCAATCTTAGACTAGGAATGAACTTCGTA
TGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
GCCAACCGAAAAGGCAGAATGCACAAGTAGAGGACCAGCCCGATCCCCCCTGCGTGCTATCAATC
CTGCTATCGCAACCCTCAGTCCAGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCCAAGTCA
ACCCACAAAACGAGCGTACGGGCCCTGACCCAACCGAAGAGGCATAATGCGCAAGTCGGGGATCG
GCCCAATCCCACTCTGCATACTGCCGATCCCACTACCACAACCATCAGTCCGACTGGG
Found at i:14284679 original size:159 final size:158
Alignment explanation
Indices: 14284285--14284702 Score: 419
Period size: 159 Copynumber: 2.6 Consensus size: 158
14284275 AACTCTGTAT
* * * *
14284285 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACCGAGCGTGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
14284349 GCTGACCGAAAAGGCAGAATGCGCAAGTTGAGGACCAGCCCGATCCCCCCTGCGTGTTATCGATC
66 GC-GACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCAATCCCCCCTGCATGCTACCGATC
* * ** * *
14284414 CTGCTATCGTAACCCTCGGTCTGATCCGA
130 CTACTACCACAACCATCGGTCCGATCCGA
* * * * ** * *
14284443 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTTTGGGCCCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * *
14284507 GCCAACCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAATCCCACTCTGCATGCTGCCGAT
65 GGCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCAATCCC-CCCTGCATGCTACCGAT
* * *
14284572 CCTACTGCCACAACCATCGGTCCGA-CTGGG
129 CCTACTACCACAACCATCGGTCCGATC-CGA
* * *
14284602 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
14284667 GCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCA
66 GCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCA
14284703 TTCGGGTCCC
Statistics
Matches: 204, Mismatches: 51, Indels: 9
0.77 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 88 0.43
159 114 0.56
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
GCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCAATCCCCCCTGCATGCTACCGATCC
TACTACCACAACCATCGGTCCGATCCGA
Found at i:14284787 original size:158 final size:157
Alignment explanation
Indices: 14284295--14284787 Score: 486
Period size: 158 Copynumber: 3.1 Consensus size: 157
14284285 GCTTACACAT
* * *
14284295 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAACCGAGCGTGCGGGCGCTCA-GCTGACCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGGC-GACCGAA
* * * * * * * * ** *
14284359 AAGGCAGAATGCGCAAGTTGAGGACCAGCCCGATCCCCCCTGCGTGTTATCGATCCTGCTATCGT
65 GAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTGCGTGCTGTCGATCCTACTGCCGC
* *
14284424 AACCCTCGGTCTGATCCGATCTTAGACTG
130 AACCCTCGGTC-GGTCTGATCTTAGACTG
* * * ** * * * *
14284453 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTTTGGGCCCTGAGCCAACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGGCGACCGAAG
* * * * * * *
14284518 AGGCATAATGCGCAAGTCGGGGATCGGCCCAATCCCACTCTGCATGCTGCCGATCCTACTGCCAC
66 AGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCT-TGCGTGCTGTCGATCCTACTGCCGC
* * * **
14284583 AACCATCGGTCCGACTGGGGCTTAGACAT-
130 AACCCTCGGTCGGTCT-GATCTTAGAC-TG
* * * * *
14284612 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGGCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGGCGACCGAAG
** * * *
14284677 AGGCAGAATGCGCAAGTCGGGGATCATTCGGGTCCCCCTTACGTGCTGTCGATCCTACTGCCGCA
66 AGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTGCGTGCTGTCGATCCTACTGCCGCA
*
14284742 ACCCTCGATACGGTCTGATCTTAGACTG
131 ACCCTCGGT-CGGTCTGATCTTAGACTG
14284770 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14284788 TTAGAGTGGG
Statistics
Matches: 260, Mismatches: 69, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
157 1 0.00
158 137 0.53
159 121 0.47
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGGCGACCGAAG
AGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTGCGTGCTGTCGATCCTACTGCCGCA
ACCCTCGGTCGGTCTGATCTTAGACTG
Found at i:14284797 original size:26 final size:26
Alignment explanation
Indices: 14284761--14284813 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14284751 ACGGTCTGAT
14284761 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14284787 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14284813 C
1 C
14284814 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14285171 original size:26 final size:26
Alignment explanation
Indices: 14285141--14285193 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14285131 CTGGTTTGAT
*
14285141 CTTAGAC-TGGGAATGAAGTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
*
14285167 CTTAGACATGGAATGAACTTTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
14285193 C
1 C
14285194 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:14285470 original size:159 final size:158
Alignment explanation
Indices: 14285276--14285661 Score: 404
Period size: 159 Copynumber: 2.4 Consensus size: 158
14285266 TTCCTGATCA
* * ***
14285276 CCCCCTGCGTGCTGTCGACCCTACTGTCGTGACCCTCGGTCTGGTCCAATCTTAGACTGGGAATA
1 CCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATA
* * *
14285341 AAC-CCCGTATGCATAAGTCAACCCATGAAAC-GAGCGTGCGGGCGCTGAGCTGACCGAAAAGGC
66 AACTCCC-TATGCATAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTCAGCCGACCGAAAAGGC
*
14285404 ATAATGCGCAAGCCGGGGATCGACCCAGTC
129 AGAATGCGCAAGCCGGGGATCGACCCAGTC
* * ****
14285434 CCCCTCTGCGTGCTGTCGATACC-GCTGCCACAACCCTCGGTTTGG-CTGGGGCTTAGACAT-GG
1 CCCC-CTGCGTGCTGTCGAT-CCTACTGCCACAACCCTCGGTCTGGTC-CAATCTTAGAC-TGGG
* * ** * *
14285496 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGCCGGTCGGAGAG
62 AATAAACTCCCTATGCATAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGCCGACCGAAAAG
* * * *
14285561 GTAGAATGCGCAAGTCGGGGATCGGCCCGGTC
127 GCAGAATGCGCAAGCCGGGGATCGACCCAGTC
* ** * * *
14285593 CCCCCTTCGTGCTGTCGATCCTACTGCCGTAACCCTCGATCCGGTCCAATCTTAGACTGGGAATG
1 CCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATA
14285658 AACT
66 AACT
14285662 TCGTATGCTT
Statistics
Matches: 183, Mismatches: 36, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.02
158 52 0.28
159 121 0.66
160 7 0.04
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.20
Consensus pattern (158 bp):
CCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATA
AACTCCCTATGCATAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGCCGACCGAAAAGGCAG
AATGCGCAAGCCGGGGATCGACCCAGTC
Found at i:14285679 original size:26 final size:26
Alignment explanation
Indices: 14285643--14285695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14285633 CCGGTCCAAT
14285643 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
14285669 CTTAGACTGGGGATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14285695 C
1 C
14285696 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14286419 original size:26 final size:25
Alignment explanation
Indices: 14286376--14286427 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14286366 GGCTCAAACT
*
14286376 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
14286401 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
14286427 C
1 C
14286428 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:14286748 original size:26 final size:26
Alignment explanation
Indices: 14286712--14286764 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14286702 CTGATTCGAT
*
14286712 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14286738 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14286764 C
1 C
14286765 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14287460 original size:26 final size:26
Alignment explanation
Indices: 14287420--14287470 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14287410 TAGTCTGATC
14287420 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
* * *
14287446 TTAGATTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14287471 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:14287814 original size:26 final size:26
Alignment explanation
Indices: 14287785--14287837 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14287775 CTGGTCCGAT
14287785 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14287811 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14287837 C
1 C
14287838 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14288287 original size:26 final size:26
Alignment explanation
Indices: 14288237--14288289 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14288227 TCGGTCCGAT
*
14288237 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
** *
14288263 CTTAGACTGGGGTTGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14288289 C
1 C
14288290 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14289856 original size:26 final size:26
Alignment explanation
Indices: 14289818--14289870 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14289808 GGCTCAAAAT
14289818 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14289844 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14289870 C
1 C
14289871 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14290399 original size:26 final size:26
Alignment explanation
Indices: 14290370--14290422 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14290360 CCGGTCTGAT
*
14290370 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14290396 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14290422 C
1 C
14290423 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14291598 original size:160 final size:159
Alignment explanation
Indices: 14291261--14291626 Score: 369
Period size: 160 Copynumber: 2.3 Consensus size: 159
14291251 AACTCTGTAT
* * *
14291261 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTAAG
* * * *
14291326 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCACCCTACGTGCTGTCAATC
66 CCGACCGGAGAGGCAGAATCCACAAGCCAAGGACCGACCCAATCCCACCCTACGTGCTATCAATC
** * * *
14291391 TTGCTATCATAACCCTCCGTCCGATCTGA
131 CCGCTACCACAACCCTCCGTCCGAGCTGA
* * * *** *
14291420 TCTTTGAC-TGGAAATGAACTTCGTATGTCTAATTTAACCCATGAAATGAGCATACGGGGCACTA
1 GCTTAGACATGG-AATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATAC-GGGCACTA
* * * * * * * * *
14291484 AGTCGGCCGGAGAGGTATAATCCACAAGTCAAGGATCGGCCCAATCCC-CCTCTGCGTGCTATCG
64 AGCCGACCGGAGAGGCAGAATCCACAAGCCAAGGACCGACCCAATCCCACC-CTACGTGCTATCA
* * *
14291548 GTCCCGCTACCACAACCCTCGGTCCG-GCTGGG
128 ATCCCGCTACCACAACCCTCCGTCCGAGCT-GA
* * *
14291580 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAAC
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAC
14291627 AGGCATGCGG
Statistics
Matches: 161, Mismatches: 41, Indels: 9
0.76 0.19 0.04
Matches are distributed among these distances:
158 3 0.02
159 46 0.29
160 109 0.68
161 3 0.02
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCACTAAG
CCGACCGGAGAGGCAGAATCCACAAGCCAAGGACCGACCCAATCCCACCCTACGTGCTATCAATC
CCGCTACCACAACCCTCCGTCCGAGCTGA
Found at i:14291775 original size:26 final size:26
Alignment explanation
Indices: 14291739--14291791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14291729 CCGATCCGAT
14291739 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14291765 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14291791 C
1 C
14291792 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14292753 original size:26 final size:26
Alignment explanation
Indices: 14292702--14292754 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14292692 CCGGTTCGAT
*
14292702 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
14292728 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14292754 C
1 C
14292755 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14292940 original size:26 final size:26
Alignment explanation
Indices: 14292911--14292960 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14292901 CCGATCCGAT
14292911 CTTAGAC-TGGGAATGAACTCCGTAGG
1 CTTAGACAT-GGAATGAACTCCGTAGG
14292937 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
14292961 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTAGG
Found at i:14293475 original size:26 final size:26
Alignment explanation
Indices: 14293446--14293498 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14293436 CCGGTCCGAT
14293446 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14293472 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14293498 C
1 C
14293499 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14293584 original size:184 final size:184
Alignment explanation
Indices: 14293230--14293656 Score: 541
Period size: 184 Copynumber: 2.3 Consensus size: 184
14293220 CTGCTGCTGG
* * * * * *
14293230 TCCTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGCAATGAACTTCGTATGCTTAGAC
1 TCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
** * * * *
14293295 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTTAGCCGGTCGG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTGCGGGCGCTCAACCGATCGG
* * * * * * *
14293360 AGAGGCAGAATGCACAAGCCAGGGATTGGCCTGGTCCACCCTGCGTGCTGTCGA
131 AAAAGCAGAATGCACAAGCCAGGGATCGCCCCGATCCACCCTACGTGCTGTCGA
* *
14293414 TCCTGTTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
14293479 ATGGAATGAACTTCGTATGCCTAAGCCAACCCCCGAAACAAACGTGTGGGCGCTCAACCGAT-GT
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTGCGGGCGCTCAACCGATCG-
* ** * *
14293543 GAAAAGTAGAATGTGCAAGTCGGGGATCGCCCCGATCCACCCTACGTGCTGTCGA
130 GAAAAGCAGAATGCACAAGCCAGGGATCGCCCCGATCCACCCTACGTGCTGTCGA
* * *
14293598 TCCTGCTGTTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14293657 CTAAGTCAAC
Statistics
Matches: 207, Mismatches: 35, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 1 0.00
184 206 1.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (184 bp):
TCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTGCGGGCGCTCAACCGATCGG
AAAAGCAGAATGCACAAGCCAGGGATCGCCCCGATCCACCCTACGTGCTGTCGA
Found at i:14293984 original size:158 final size:154
Alignment explanation
Indices: 14293797--14294290 Score: 445
Period size: 158 Copynumber: 3.1 Consensus size: 154
14293787 GGCTTAGACA
** *
14293797 TGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCATGCAGGTTCTCAGCCAGCGGAC
1 TGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGC-TGCAGG-TCTCAGCCAGCGGA-
* * * **
14293862 GAGGCAAAATACGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCCTACTGCCGT
63 GAGGCAAAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCTACTGCCGT
* *
14293927 AACCCTCGATCCAGTTTGATCTTAGAT
128 AACCCTCGGTCCAGTTCGATCTTAGAT
* * * * * * * *
14293954 TGAGAATGAGCTCCATATGCCTAAGTCAACCCATAAAATGAG-TGTATGGGCGATGAGCCGACCG
1 TG-GAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCTGCA-GGTC--TCAGCC-AGCG
* * * *
14294018 GAGAGGCATAATGCGCAAGCCAGGGATCGGCTTGGTCCCCCTCTGCGTGATGCCGATCCTACTGC
61 GAGAGGCAAAATGCGCAAGCTAGGGATCGGCTCGGTCCCCC-CTGCGTGCTGCCGATCCTACTGC
** * * ** *
14294083 CACAACCCTCGGTCCAGCTGGGGCTTAGAGA
125 CGTAACCCTCGGTCCAGTTCGATCTTAGA-T
* * *
14294114 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGT-TCAG-CAGGTCA
1 TGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGC-TGC-AG-GTCTCAGCCA-G-CG
* * * * * * **
14294177 GAGAGGCAGAATGCGCAAGTTAGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCCTGCTATC
61 GAGAGGCAAAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCTACTGCC
*
14294242 GTAACCCGCGGTCCAGTTCGATCTTAGAT
126 GTAACCCTCGGTCCAGTTCGATCTTAGAT
*
14294271 TGGGAATGAACTCCGTATGC
1 T-GGAATGAACTCCATATGC
14294291 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 59, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 4 0.02
157 6 0.02
158 128 0.48
159 119 0.45
160 2 0.01
161 3 0.01
162 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (154 bp):
TGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCTGCAGGTCTCAGCCAGCGGAGAG
GCAAAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCTACTGCCGTAAC
CCTCGGTCCAGTTCGATCTTAGAT
Found at i:14294046 original size:317 final size:317
Alignment explanation
Indices: 14293564--14294290 Score: 834
Period size: 317 Copynumber: 2.3 Consensus size: 317
14293554 TGTGCAAGTC
* * * * * ** *
14293564 GGGGATCGCCCCGATCCACCCTACGTGCTGTCGATCCTGCTGTTGCAACCCTCGATCTGGTCTGA
1 GGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCAGTTTGA
* *
14293629 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCACTGAG
66 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTATGGGCACTGAG
* ** * * ** * *
14293694 CTGGTCAGAAAGGCATAATGCACAAGCCGGGGATCGGCCCAGTCCCTCTCTGCGTTCTGCTGGTC
131 CCGACCAGAAAGGCATAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGATGCCGATC
** * ** **
14293759 CCGTTGCCACACCCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
196 CCACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
*
14293824 ACCCACAAAACAAGCATGC-AG-GTTCTCAGCCA-G-CGGACGAGGCAAAATACGCAAGCT
261 ACCCACAAAACAAGCATGCGAGCG-T-TCAG-CAGGTCAGA-GAGGCAAAATACGCAAGCT
* * * *
14293881 GGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCCTACTGCCGTAACCCTCGATCCAGTTTGA
1 GGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCAGTTTGA
* * * * *
14293946 TCTTAGATTGAGAATGAGCTCCATATGCCTAAGTCAACCCATAAAATGAGTGTATGGGCGA-TGA
66 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTATGGGC-ACTGA
* * * ***
14294010 GCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCTTGGTCCCCCTCTGCGTGATGCCGAT
130 GCCGACCAGAAAGGCATAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGATGCCGAT
* * *
14294075 CCTACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGAGATGGAATGAACTCCCTATGCCTAAGCC
195 CCCACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
14294140 AACCCACGAAACGAGCGTGCGAGCGTTCAGCAGGTCAGAGAGGCAGAATGCGCAAGTT
260 AACCCACAAAACAAGCATGCGAGCGTTCAGCAGGTCAGAGAGGCAAAATACGCAAGCT
* * * * * * * * *
14294198 AGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCCTGCTATCGTAACCCGCGGTCCAGTTCGA
1 GGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCAGTTTGA
14294263 TCTTAGATTGGGAATGAACTCCGTATGC
66 TCTTAGATTGGGAATGAACTCCGTATGC
14294291 TTAGACTGGG
Statistics
Matches: 338, Mismatches: 67, Indels: 10
0.81 0.16 0.02
Matches are distributed among these distances:
316 2 0.01
317 328 0.97
318 7 0.02
319 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (317 bp):
GGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCAGTTTGA
TCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTATGGGCACTGAG
CCGACCAGAAAGGCATAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGATGCCGATC
CCACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACAAAACAAGCATGCGAGCGTTCAGCAGGTCAGAGAGGCAAAATACGCAAGCT
Found at i:14294181 original size:159 final size:157
Alignment explanation
Indices: 14293630--14294290 Score: 475
Period size: 159 Copynumber: 4.2 Consensus size: 157
14293620 CTGGTCTGAT
* * * * * ** *
14293630 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCACTGAGC
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGTTCAGC
* * * * * * * * *
14293695 TGGTCAGAAAGGCATAATGCACAAGCCGGGGATCGGCCCAGTCCCTCTCTGCGTTCTGCTGGTCC
65 AGGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCC-CCCTGCGTGCTGCCGATCC
*** * **
14293760 CGTTGCCACACCCCTCGGTCTGGCTAGGG
129 TACTGCCACAACCCTCGGTCCAGCTAGGG
* * *
14293789 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCATGC-AG-GTTCTCA
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCG-T-TCA
* * * ** * * **
14293852 GCCA-G-CGGACGAGGCAAAATACGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGA
63 G-CAGGTCAGA-GAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGA
** * * * **
14293915 TCCTACTGCCGTAACCCTCGATCCAGTTTGAT
126 TCCTACTGCCACAACCCTCGGTCCAGCTAGGG
* * * * * * * ** * * *
14293947 CTTAGATTGAGAATGAGCTCCATATGCCTAAGTCAACCCATAAAATGAGTGTATGGGCGATGAGC
1 CTTAGAATG-GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGTTCAGC
* ** * ** *
14294012 CGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCTTGGTCCCCCTCTGCGTGATGCCGATCC
65 AGGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATCC
*
14294077 TACTGCCACAACCCTCGGTCCAGCTGGGG
129 TACTGCCACAACCCTCGGTCCAGCTAGGG
* *
14294106 CTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGTTCAGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGTTCAGC
* ** * *
14294171 AGGTCAGAGAGGCAGAATGCGCAAGTTAGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCCT
65 AGGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
* ** ** * * * **
14294236 GCTATCGTAACCCGCGGTCCAGTTCGAT
130 ACTGCCACAACCCTCGGTCCAGCTAGGG
*
14294264 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGAAT-GGAATGAACTCCGTATGC
14294291 TTAGACTGGG
Statistics
Matches: 379, Mismatches: 110, Indels: 27
0.73 0.21 0.05
Matches are distributed among these distances:
157 4 0.01
158 165 0.44
159 205 0.54
160 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGTTCAGCA
GGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTA
CTGCCACAACCCTCGGTCCAGCTAGGG
Found at i:14295046 original size:158 final size:160
Alignment explanation
Indices: 14294636--14295055 Score: 411
Period size: 158 Copynumber: 2.6 Consensus size: 160
14294626 AACTCTGTAT
* * * * *
14294636 GCTTAGACATGGAATGAATTCTGTATGCCTAAGCCAACCCACGAAATGAGAATATCGGGT-GCTC
1 GCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCAT-GCAGGTAGCTC
* * * ** * * **
14294700 AGCCAGCC-AGAGAGGCAGAATACGCAAGCCGGGGATCGATCTAGTCCCTCCCTGCGTGCTGTTA
65 AGCCGGCCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCGCCCTGCGTGCTGCCA
* * *
14294764 ATCTTGCTGCCGCAACCCTCGGTCTGGTCCAA
129 ATCTTGCTGCCACAACCCTCGGTCTCGACCAA
* * * *
14294796 TCTTAGAC-TGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCAGGTA-CTG
1 GCTTAGACAT-GGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGTAGCTC
** * * * * * * *
14294859 AGCCGATCGGAGAGGCATACTGCGTAAGCTAGGGATCGGCCCGGTCCCGCTCTGCGTGCTGCCAA
65 AGCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCGCCCTGCGTGCTGCCAA
***
14294924 TCTTGCTGCCACAACCCTCGGTC-CGACTGG
130 TCTTGCTGCCACAACCCTCGGTCTCGACCAA
* * * * *
14294954 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGC-GGTAGCTCA
1 GCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGTAGCTCA
* *
14295018 GCCGGCCGAAGAGGTAGAATGCACAAGCTGGGGATCGG
66 GCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGG
14295056 TTTGATCCCC
Statistics
Matches: 204, Mismatches: 51, Indels: 12
0.76 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 79 0.39
159 76 0.37
160 45 0.22
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGTAGCTCA
GCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCGCCCTGCGTGCTGCCAAT
CTTGCTGCCACAACCCTCGGTCTCGACCAA
Found at i:14295809 original size:26 final size:25
Alignment explanation
Indices: 14295771--14295824 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
14295761 TGCACCGTGG
14295771 CTCAAAATCTTAGAC-TGGGAATGAA
1 CTCAAAATCTTAGACAT-GGAATGAA
*
14295796 CTCAATATGCTTAGACATGGAATGAA
1 CTCAAAAT-CTTAGACATGGAATGAA
14295822 CTC
1 CTC
14295825 CGCTATGCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 7 0.27
26 18 0.69
27 1 0.04
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (25 bp):
CTCAAAATCTTAGACATGGAATGAA
Found at i:14296833 original size:26 final size:26
Alignment explanation
Indices: 14296789--14296841 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14296779 CCGGTCCAAT
* *
14296789 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
14296815 CTTAGACTGAGG-ATCAACTCCGTATG
1 CTTAGACTG-GGAATCAACTCCGTATG
14296841 C
1 C
14296842 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:14298061 original size:159 final size:157
Alignment explanation
Indices: 14297523--14298112 Score: 492
Period size: 159 Copynumber: 3.7 Consensus size: 157
14297513 AACTCCGTAT
* * * * * *
14297523 GCTTAGACATGGAATGAACGCCATATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCACGAAACGAGCGTGCGAGTGCTCAG
* * * * * * *
14297588 CCGACTGGAGAGGCAGAATGTGCAAGCCAAGGATCGACCCGGTCCCCC-CATGCATGCCGTCGAT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTC-TGCATGCTGCCGGT
* * * *
14297652 CCTGCTGCCACAACCCTCAGTTCGGTCCGA
130 CCAGCTGCCACAACCCT-AGTTCGCT-GGG
* * * * * *
14297682 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTC-AACCAACGAAACGAGCG-CCCAG-GCGT
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAG-CGAACCCACGAAACGAGCGTGCGAGTGC--
* * * * ** *** *
14297743 TGAGCCGACTGAAGAGGCATAATACGCAAGTTGAGGATCGGTTCGGTCCCCCTCTGCTTGCTGCC
62 TCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCC
* * *
14297808 GGTCCCGCTGCCACAACCC-ACGATCTGGTTGGG
127 GGTCCAGCTGCCACAACCCTA-G-T-TCGCTGGG
* * * * * * *
14297841 GCTTAGACATGGAATAAACTCCCTATGCCTAAG-GCAACCCACAAAATGGGCGTACGGGTGCTGA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCG-AACCCACGAAACGAGCGTGCGAGTGCTCA
* * * * * *
14297905 GCCGACCGAAGAGGCATAATGCGAAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCGGT
* *
14297970 CCAACTGCCACAACCCTTGTTTCAGCTGGG
130 CCAGCTGCCACAACCCTAG-TTC-GCTGGG
* *
14298000 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCGATGAAACGAGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCACGAAACGAGCGTGCGAGTGCTCAG
** * * *
14298065 TTGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC
14298113 CTTGGTGCTG
Statistics
Matches: 341, Mismatches: 74, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 5 0.01
159 322 0.94
160 9 0.03
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCACGAAACGAGCGTGCGAGTGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCGGTC
CAGCTGCCACAACCCTAGTTCGCTGGG
Found at i:14298560 original size:26 final size:26
Alignment explanation
Indices: 14298531--14298580 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14298521 CCGGTCCGAT
*
14298531 CTTAGAC-TGGGAATTAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14298557 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
14298581 GGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14299531 original size:158 final size:157
Alignment explanation
Indices: 14298557--14299524 Score: 676
Period size: 158 Copynumber: 6.1 Consensus size: 157
14298547 ACTCCGTATG
* * *
14298557 CTTAGACATG-GAATGAACTCCGTAGGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCT-
1 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GG-GCTCTG
* * * * * * *
14298620 -GCTGG-CCAGAGAGGCAGAATGCGCAAGTCGGGGAGCGACCCGGTCCCCCCTTCGTGCTGTCGA
63 AGCCGGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTGCGTGCTGTCGA
* * * * * *
14298683 TCTTGCTGCCTCAACCCTCAGTTCGGTTTGA-
126 TCCTACTGCCACAACCCTCGGTCCGGTTCGAT
* * ** * **
14298714 CTTAGACT-AGGAATGAACTTCGTATGCCTAAGTCAACCGATTAAACGAGTGTTTGGG-TGCTGA
1 CTTAGACTGA-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCT-CTGA
* * * * * *
14298777 GCCGGTCGGATAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCCCGCTACGTCCTGTCGAT
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCC-CTGCGTGCTGTCGAT
* * ** ** *
14298842 CCTATTGCCATAA-CCTCACT-TTGATCTGAT
127 CCTACTGCCACAACCCTCGGTCCGGTTC-GAT
* * * * * * *
14298872 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAATGAGCGCT-TGAGCACTGAG
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGGCTCTGAG
** *
14298936 CCGGTC-AGAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCTTGCGTGCTGTCGATC
65 CCGGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-TGCGTGCTGTCGATC
* * * *
14299000 CTACTACCATAACCCTCGGTCTGATAT-GAT
128 CTACTGCCACAACCCTCGGTCCGGT-TCGAT
* * * * * * *
14299030 CTTGGACT-AGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGAGCACTGAA
1 CTTAGACTGA-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTGAG
* * * * * * *
14299094 CCGGTCGAAGAGGTATAATGCACAAGCCAGGGATTGGCCCGATCCTCCTCTGCGTGTTGTCGGTC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCC-CC-CTGCGTGCTGTCGATC
* * * * **
14299159 CTGCTGCCACAACCCTCGATCTGGTTGGGG
128 CTACTGCCACAACCCTCGGTCCGGTTCGAT
* * * * * * *
14299189 CTTAGAC-AAGGAATGAACTCCCTATGCCTAAGAT-AACCCACAAAATGGGCGTACGGGC-GTGA
1 CTTAGACTGA-GAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCTCTGA
* * * * * * *
14299251 GCCGATCGATGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTTGCATACTATCGGT
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC--TGCGTGCTGTCGAT
* * * * **
14299316 CCCACTGCCACTACCCTCGGTCCGGATGGGG
127 CCTACTGCCACAACCCTCGGTCCGGTTCGAT
* * *
14299347 CTTAAACATG-GAATGAACTCCCTATGCCTAAG-CTAACCCACGAAACGAGCGTGCGGGCTCTCA
1 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCTCTGA
** * * * * * *
14299410 GCCGACCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCTCCTACATGTTGTCGATC
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCTGCGTGCTGTCGATC
*
14299475 CTGCTGCCACAACCCTCGGTCCGGTTCGAT
128 CTACTGCCACAACCCTCGGTCCGGTTCGAT
14299505 CTTAGACTGAGAATGAACTC
1 CTTAGACTGAGAATGAACTC
14299525 TATATGCTTA
Statistics
Matches: 645, Mismatches: 132, Indels: 67
0.76 0.16 0.08
Matches are distributed among these distances:
154 1 0.00
155 3 0.00
156 7 0.01
157 120 0.19
158 380 0.59
159 129 0.20
160 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTGAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCCGGTTCGAT
Found at i:14300536 original size:26 final size:26
Alignment explanation
Indices: 14300507--14300559 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14300497 CCGATTTGAT
14300507 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14300533 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14300559 C
1 C
14300560 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14302251 original size:158 final size:156
Alignment explanation
Indices: 14301752--14302402 Score: 535
Period size: 158 Copynumber: 4.1 Consensus size: 156
14301742 GCTTAAACAT
* * * * * ** * *
14301752 GGAATGAACTCCGTATGGCTAAGCCAACCCATGAAATGAGCGTGTAGGG-GCTCAGCCGGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGCACTCAATC-GACCGA
* * * * * * * *** * * *
14301816 GACGCAAAATGCGCAAGCTAGGGATCGACCCAGTCCCCCCTACTTGCTGTTGATCCCGCTATCAC
64 GAGGC-AAATGCGCAAGCCAGGGATCAACCCGGTCCCCACTGCATGCTACCGATCCTGCTGTCGC
*
14301881 AACCCTC-AGTCCGGTCCAATCTTAGACTG
128 AACCCTCGA-TTCGGTCCAATCTTAGACTG
* * * ** *
14301910 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAATCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAATCGACC-GAG
* ** * * * * *
14301975 AGGCATAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTACCGGTCCCGCTGCCAC
65 AGGCA-AATGCGCAAGCCAGGGATCAACCCGGT-CCCCACTGCATGCTACCGATCCTGCTGTCGC
* * * *
14302040 AATCCTCGATGT-GG-CTAGGTCTGAGACAT-
128 AACCCTCGAT-TCGGTCCA-ATCTTAGAC-TG
* * *
14302069 GGAATGAACTACC-TATGCCTAAGCCAAACCACGAAACGGGCGTGCGGGCACTCAACCGACCAGA
1 GGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAATCGACC-GA
* * * *
14302133 GAGGCAGAATGCGTAAGCCGGGGATCTACCCGATCCCCACTGCATGCTACCGATCCTGCTGTCGC
64 GAGGCA-AATGCGCAAGCCAGGGATCAACCCGGTCCCCACTGCATGCTACCGATCCTGCTGTCGC
*
14302198 AACCCTC-AGTTCGATCCAATCTTAGACTG
128 AACCCTCGA-TTCGGTCCAATCTTAGACTG
* * * * *
14302227 GGAATGAACTCTGTATGCCTAAGCCAACCCCCGAAACAAGCATGCGGGCACTCAGTCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAATCGACCG-AG
* * * * **
14302292 AGGCAAAGTGCACAAGCTAGGGA-CAAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGC
65 AGGCAAA-TGCGCAAGCCAGGGATCAA-CCCGGTCCCCACTGCATGCTACCGATCCTGCTGTCGC
* *
14302356 AACCCTCGATTTGGTCCAATCTTAGATTG
128 AACCCTCGATTCGGTCCAATCTTAGACTG
14302385 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14302403 TTAGACTGGG
Statistics
Matches: 397, Mismatches: 78, Indels: 36
0.78 0.15 0.07
Matches are distributed among these distances:
157 15 0.04
158 259 0.65
159 119 0.30
160 4 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAATCGACCGAGA
GGCAAATGCGCAAGCCAGGGATCAACCCGGTCCCCACTGCATGCTACCGATCCTGCTGTCGCAAC
CCTCGATTCGGTCCAATCTTAGACTG
Found at i:14302412 original size:26 final size:26
Alignment explanation
Indices: 14302376--14302428 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14302366 TTGGTCCAAT
*
14302376 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14302402 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14302428 C
1 C
14302429 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14302484 original size:158 final size:158
Alignment explanation
Indices: 14302322--14302625 Score: 475
Period size: 158 Copynumber: 1.9 Consensus size: 158
14302312 GGACAAGCCC
* * * *
14302322 GGTCCCCCCTGCGTGCTGTCGATCCTGCTG-TCGCAACCCTCGATTTGGTCCAATCTTAGATTGG
1 GGTCCCACCTGCGTGCTGTCGATCCTGCTGCT-GCAACCCTCGATCTGGTCCAATCTTAGACTAG
*
14302386 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
65 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAG
*
14302451 CGTATGGGCATTCAGTCGGGGATCGGCCA
130 CGTATGGGCACTCAGTCGGGGATCGGCCA
* * * **
14302480 GGTCCCACCTGCGTGCTGTCGATCCTGCTGCTGTAACCTTCGGTCTGGTCTGATCTTAGACTAGG
1 GGTCCCACCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCTGGTCCAATCTTAGACTAGG
*
14302545 AATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTACGCCTAAGTCAACCCATGAAACGAGC
66 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGC
*
14302610 GTGTGGGCACTCAGTC
131 GTATGGGCACTCAGTC
14302626 AACCCGAGAG
Statistics
Matches: 132, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
158 131 0.99
159 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (158 bp):
GGTCCCACCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCTGGTCCAATCTTAGACTAGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGC
GTATGGGCACTCAGTCGGGGATCGGCCA
Found at i:14302575 original size:26 final size:26
Alignment explanation
Indices: 14302534--14302583 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14302524 CTGGTCTGAT
14302534 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14302560 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTAGGAATGAACTCCGTA
14302584 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14302964 original size:26 final size:26
Alignment explanation
Indices: 14302914--14302966 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14302904 GCGGTCTGAT
*
14302914 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAATCTCGTATG
14302940 CTTAGACAT-GGAATGAA-CTCTGTATG
1 CTTAGAC-TGGGAATGAATCTC-GTATG
14302966 C
1 C
14302967 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATCTCGTATG
Found at i:14303242 original size:159 final size:158
Alignment explanation
Indices: 14302940--14303454 Score: 387
Period size: 159 Copynumber: 3.3 Consensus size: 158
14302930 ATTTCGTATG
* ** * *
14302940 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGCAATGAGCGTGCGGCGCTCAGCC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGCGCACAGCC
* * * * * * *
14303005 GACCGGAGAGGCAGAATGCGCAAGTCGAGGATGGGCCCGGTCCCCCCCTCCGTGTTGTCAATCCT
66 AACCGGAAAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCCTCCATGCTGTCAATCCT
** *
14303070 GCTGTCGCAACCCTCGATCCAGTTTGAT
131 GCTACCACAACCCTCGATCCAGTTTGAT
*
14303098 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG-GCACAGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGCGCAC--A
* * * * *
14303161 GTCAACCGGAAAGGCATAATGCGCAAG-CTGAGGATCGACCCGATCCCCCTCTGCATGCTGTCAG
63 GCCAACCGGAAAGGCAGAATGCGCAAGTC-GAGGATCGACCCGATCCCCCCCTCCATGCTGTCAA
* *** * * **
14303225 TCCTGCTACCACAACCCTCGGTTTGGCTGGGG
127 TCCTGCTACCACAACCCTCGATCCAGTTTGAT
* * * * * *
14303257 CTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGC-GGCGCACAGC
*** * * * * * * * * **
14303322 CGGTC-GAAGAGGCAGAATGCACGAGCCGGGGATCTACCCGGT-CCCCCCTACATGCTATTGATC
65 CAACCGGAA-AGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCCTCCATGCTGTCAATC
* **** * **
14303385 CTACTGTTGCAACCCTCAATCC-GATCCGAT
129 CTGCTACCACAACCCTCGATCCAG-TTTGAT
* *
14303415 CTTAGAC-TGGGAATAAACTCTGTATGCCTAAGCCAACCCA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
14303455 TGAAATAAGC
Statistics
Matches: 276, Mismatches: 70, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 116 0.42
159 147 0.53
160 4 0.01
161 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGCGCACAGCC
AACCGGAAAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCCTCCATGCTGTCAATCCT
GCTACCACAACCCTCGATCCAGTTTGAT
Found at i:14303469 original size:158 final size:157
Alignment explanation
Indices: 14302940--14303598 Score: 409
Period size: 158 Copynumber: 4.2 Consensus size: 157
14302930 ATTTCGTATG
* * * **
14302940 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGCAATGAGCGTGC-GGCGCTCAG
1 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * *** * * * * *
14303003 CCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATGGGCCCGGTCCCCCCCTCCGTGTTGTCAATC
65 CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGACAAGCCCGGT-CCCCCCTACATGCTATCGATC
* ** * **
14303068 CTGCTGTCGCAACCCTCGATCCAGTTTGAT
129 CTACTACCGCAA-CCTCAATCCAGTCCGAT
* * * * * * ** *
14303098 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACAGAGT
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
** * * * * * * * *
14303163 CAACCGGAA-AGGCATAATGCGCAAGCTGAGGATCGA-CCCGATCCCCCTCTGCATGCTGTC-AG
66 CGGCC-GAAGAGGCAGAATGCACAAGCCGGGGA-CAAGCCCGGTCCCCC-CTACATGCTATCGA-
* * ** ** * * **
14303225 TCCTGCTACCACAACCCTCGGT-TTGGCTGGGG
127 TCCTACTACCGCAA-CCTCAATCCAGTC-CGAT
* * * ** *
14303257 CTGAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * *
14303321 CCGGTCGAAGAGGCAGAATGCACGAGCCGGGGATCTA-CCCGGTCCCCCCTACATGCTATTGATC
65 CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGA-CAAGCCCGGTCCCCCCTACATGCTATCGATC
***
14303385 CTACTGTTGCAACCCTCAATCC-GATCCGAT
129 CTACTACCGCAA-CCTCAATCCAG-TCCGAT
* * * *
14303415 CTTAGACTGGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * ** * * * *
14303480 TGGCCGGAGAGGTAGATTGCGTAAGTCGGGTACAAGCCTGGTCCCCCCTACATGCTGTCGATCCT
66 CGGCCGAAGAGGCAGAATGCACAAGCCGGGGACAAGCCCGGTCCCCCCTACATGCTATCGATCCT
*
14303545 ACTACCGCAACCTCAGTCCAGTCCGAT
131 ACTACCGCAACCTCAATCCAGTCCGAT
14303572 CTTAGACTGGGAATAAACTCCGTATGC
1 CTTAGACTGGGAATAAACTCCGTATGC
14303599 TTAGACTGGG
Statistics
Matches: 391, Mismatches: 95, Indels: 31
0.76 0.18 0.06
Matches are distributed among these distances:
157 44 0.11
158 192 0.49
159 151 0.39
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCACAAGCCGGGGACAAGCCCGGTCCCCCCTACATGCTATCGATCCT
ACTACCGCAACCTCAATCCAGTCCGAT
Found at i:14303918 original size:183 final size:185
Alignment explanation
Indices: 14303679--14304016 Score: 509
Period size: 183 Copynumber: 1.8 Consensus size: 185
14303669 TCGGTCCGAT
* * * * * *
14303679 CCCCCCTGCGTGCTATCGATCTTGCTGTTGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAAT
1 CCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAAT
* *
14303744 GAACT-CTATATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG-GT
66 GAACTCCTATATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGTGT
* *
14303807 GTGGGCACTCAGCCGGCCGAAGAGGTAGAATGCGTAAGCCGAGGATCAGCTCGGA
131 GCGGGCACTCAGCCGACCGAAGAGGTAGAATGCGTAAGCCGAGGATCAGCTCGGA
* * *
14303862 CCCCCCTGTGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAAT
1 CCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAAT
* * *
14303927 GAACTCCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCGACCCATAAAACGAGTGT
66 GAACTCCTATATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGTGT
*
14303992 GCGGGCACTCAGTCGACCGAAGAGG
131 GCGGGCACTCAGCCGACCGAAGAGG
14304017 CAGGCCGGAG
Statistics
Matches: 136, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
183 61 0.45
184 51 0.38
185 24 0.18
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
CCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAAT
GAACTCCTATATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGTGT
GCGGGCACTCAGCCGACCGAAGAGGTAGAATGCGTAAGCCGAGGATCAGCTCGGA
Found at i:14303955 original size:27 final size:26
Alignment explanation
Indices: 14303913--14303966 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
14303903 CCGGTCCGAT
14303913 CTTAGACTAGGAATGAACTCCTGTATG
1 CTTAGACTAGGAATGAACTCC-GTATG
* *
14303940 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14303966 C
1 C
14303967 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14304322 original size:26 final size:26
Alignment explanation
Indices: 14304293--14304345 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14304283 CCAGTCCGAT
14304293 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14304319 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14304345 C
1 C
14304346 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14305565 original size:26 final size:26
Alignment explanation
Indices: 14305527--14305579 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14305517 GGCTTAAAAT
*
14305527 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14305553 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14305579 C
1 C
14305580 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14306064 original size:26 final size:26
Alignment explanation
Indices: 14306025--14306078 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14306015 GCTCTGATCT
14306025 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
14306051 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14306077 TA
1 TA
14306079 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:14308873 original size:183 final size:185
Alignment explanation
Indices: 14308426--14308885 Score: 548
Period size: 183 Copynumber: 2.5 Consensus size: 185
14308416 TCCGGCTGGG
* *
14308426 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGTGGGTGCTCAG
* * * ** *
14308491 CCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCCTGCGTGCTCTCGATC
66 CCGACCGGAGAGGCAGAATGCACAAGCTCAGGATCAGCCCGGTCCCCCCCTACGTGCTCTCGATC
* *** *
14308556 CTGCTGCCGTAACCCTCGGTCCAGTTTTATCTTAGACTGGGAACGAACTCTGAAT
131 CTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAACGAACTCCGAAT
* * **
14308611 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGTGGGTGCTCAG
* * ** * *
14308676 CCGACCGGAGAGGCAGAATGCATAAG-TCAGGAT-TGACCCGGT-TTCCCCTACGTGCTGTTGAT
66 CCGACCGGAGAGGCAGAATGCACAAGCTCAGGATCAG-CCCGGTCCCCCCCTACGTGCTCTCGAT
*** * *
14308738 CCTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAACGAACTCCGAAT
* * * **
14308794 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGTGGGTGCTCAG
* * * * *
14308859 CTGGCCGAAGAGGCATAATGCTCAAGC
66 CCGACCGGAGAGGCAGAATGCACAAGC
14308886 CGGGGATCAA
Statistics
Matches: 231, Mismatches: 42, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
183 139 0.60
184 11 0.05
185 81 0.35
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGTGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCTCAGGATCAGCCCGGTCCCCCCCTACGTGCTCTCGATC
CTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAACGAACTCCGAAT
Found at i:14309161 original size:26 final size:26
Alignment explanation
Indices: 14309124--14309175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14309114 TGGTCTGATT
14309124 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
14309150 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
14309176 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14309291 original size:183 final size:183
Alignment explanation
Indices: 14308965--14309332 Score: 429
Period size: 183 Copynumber: 2.0 Consensus size: 183
14308955 TTCGACTGGG
* * *
14308965 GCTTAGACATGGAATGAACTCTGTATGCCTCAGCCAACCCACAAAACGAGCGTGGGGCGCTCAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGGGGCGCTCAAC
* * * *
14309030 CGATCGGAGAGACAGAATGGCGCAAGCCGAGGATCGGCCTGGCCCCCCTACGTGCTACCGATCCT
66 CGACCGGAGAGACAGAATGGCACAAGCCGAGGATCGACCTGGCCCCCCCACGTGCTACCGATCCT
* * * * **
14309095 GCTGTCTTAACCCTCAGTCTGGTCTGATTTTAGACTGGGAATGAACTCCATAT
131 ACTGCCGTAACCCTCAGTCTGATCTGATCATAGACTGGGAATGAACTCCATAT
* * *
14309148 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-GCAGCGAAACAAGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAAACAAGCGTG-GGGCGCTCA
* ** * * * ***
14309212 GCCGACCGGAGAGGTAGAAT-GCATAAG-CGATGATTGA-CTCGGCCCCCCCAGCGTGCTGTTGA
64 ACCGACCGGAGAGACAGAATGGCACAAGCCGAGGATCGACCT-GGCCCCCCCA-CGTGCTACCGA
* *
14309274 TCCTACTGCCGTAACCCTCGGTCTGATCTGATCATAGACTGGGAATGAACTCCGTAT
127 TCCTACTGCCGTAACCCTCAGTCTGATCTGATCATAGACTGGGAATGAACTCCATAT
14309331 GC
1 GC
14309333 CTAAGTGAAC
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
181 2 0.01
182 18 0.12
183 109 0.71
184 25 0.16
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGGGGCGCTCAAC
CGACCGGAGAGACAGAATGGCACAAGCCGAGGATCGACCTGGCCCCCCCACGTGCTACCGATCCT
ACTGCCGTAACCCTCAGTCTGATCTGATCATAGACTGGGAATGAACTCCATAT
Found at i:14309292 original size:537 final size:527
Alignment explanation
Indices: 14308276--14309332 Score: 1279
Period size: 537 Copynumber: 2.0 Consensus size: 527
14308266 TCTTAGACTA
* * * * *
14308276 GGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCTGGCCAAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCTGGCCAAAG
*** *
14308341 AGGCATAATGTGCAAGCCGGGGATTGGCCCGGTCCCCCTCTACGTGCTATCGATCCCACTGCCAC
66 AGGCATAATGTGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTATCGATCCCACTGCCAC
* *
14308406 AACCCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
131 AACCCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATCAA
* * * ** * *
14308471 AAGGGCGTGTGGGTGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGGTCC
196 AAGAGCGTGTGGGCGCTCAACCGATCGGAGAGACAGAATGCGCAAGCCGAGGATCAGCCCGG-CC
* * * *
14308536 CCCCCTGCGTGCTCTCGATCCTGCTGCCGTAACCCTCGGTCCAGTTTTATCTTAGACTGGGAACG
260 CCCCCTACGTGCTCTCGATCCTGCTGCCGTAACCCTCAGTCCAGTCTGATCTTAGACTGGGAACG
* * ** *
14308601 AACTCTGAATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGT
325 AACTCTCAATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGC
** *
14308666 GGGCACTCAGCCGACCGGAGAGGCAGAATGCATAAGTCAGGATTGACCCGGTTTCCCCTACGTGC
390 GGGCACTCAGCCGACCGGAGAGGCAGAATGCATAAGTCAGGATTGACCCGGTCCCCCCCACGTGC
* * * *
14308731 TGTTGATCCTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
455 TGTTGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCATAGACTGGGAATGAACTCCGTATGC
14308796 TTAGAGAT
520 TTAGAGAT
** *
14308804 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCTGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCTGGCCAAAG
** * *
14308869 AGGCATAATGCT-CAAGCCGGGGATCAACTTGATCCCCCTCTGCGTGCTGGTGATCCCGCTGTCG
66 AGGCATAATG-TGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGC---T-AT--CG--ATC-
* * * ** *
14308933 GTCCTACTGCCAGAACCC-TCTGTTCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTCA
121 --CC-ACTGCCACAACCCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
14308997 GCCAACCCA-CAAAACGAGCGTG-GGGCGCTCAACCGATCGGAGAGACAGAATGGCGCAAGCCGA
183 GCCAACCCATCAAAA-GAGCGTGTGGGCGCTCAACCGATCGGAGAGACAGAAT-GCGCAAGCCGA
* * * * **
14309060 GGATCGGCCTGG-CCCCCCTACGTGCTAC-CGATCCTGCTGTCTTAACCCTCAGTCTGGTCTGAT
246 GGATCAGCCCGGCCCCCCCTACGTGCT-CTCGATCCTGCTGCCGTAACCCTCAGTCCAGTCTGAT
* * * *
14309123 TTTAGACTGGGAATGAACTC-CATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-G
310 CTTAGACTGGGAACGAACTCTCA-ATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
* * * *
14309186 CAGCGAAACAAGTGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCATAAG-CGATGATTGAC
374 CA-CGAAACAAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCATAAGTC-AGGATTGAC
* * *
14309250 TCGG-CCCCCCCAGCGTGCTGTTGATCCTACTGCCGTAACCCTCGGTCTGATCTGATCATAGACT
437 CCGGTCCCCCCCA-CGTGCTGTTGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCATAGACT
14309314 GGGAATGAACTCCGTATGC
501 GGGAATGAACTCCGTATGC
14309333 CTAAGTGAAC
Statistics
Matches: 445, Mismatches: 64, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
528 95 0.21
529 1 0.00
531 1 0.00
532 2 0.00
534 2 0.00
536 11 0.02
537 215 0.48
538 30 0.07
539 76 0.17
540 12 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (527 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCTGGCCAAAG
AGGCATAATGTGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTATCGATCCCACTGCCAC
AACCCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATCAA
AAGAGCGTGTGGGCGCTCAACCGATCGGAGAGACAGAATGCGCAAGCCGAGGATCAGCCCGGCCC
CCCCTACGTGCTCTCGATCCTGCTGCCGTAACCCTCAGTCCAGTCTGATCTTAGACTGGGAACGA
ACTCTCAATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCG
GGCACTCAGCCGACCGGAGAGGCAGAATGCATAAGTCAGGATTGACCCGGTCCCCCCCACGTGCT
GTTGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCATAGACTGGGAATGAACTCCGTATGCT
TAGAGAT
Found at i:14310875 original size:26 final size:26
Alignment explanation
Indices: 14310824--14310876 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14310814 CCGGTCTGAT
**
14310824 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14310850 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14310876 C
1 C
14310877 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14311050 original size:26 final size:26
Alignment explanation
Indices: 14311021--14311073 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14311011 CCAGTCCGAT
14311021 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
14311047 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14311073 C
1 C
14311074 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14311059 original size:197 final size:193
Alignment explanation
Indices: 14310653--14311184 Score: 640
Period size: 197 Copynumber: 2.7 Consensus size: 193
14310643 TCTGGCTAGG
* * *
14310653 GCTTAGACATGGAATAAACATGCTATGCCTAAGCCAACCCACGAAACGGGCATGTG-GGCGCTCA
1 GCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAACGAG--TGTGCGGCGCTCA
** * * **
14310717 ACCCACCGGAGAGGCAGAATGTGCAAGCTGGGGATCGG-CCCGGTCCCCCCTACGTGCTGCCTCT
63 A-CCACCGGAGAGGCAGAATGCACAAGC-GGGGATCGGACCCGGTCCCCCCTGCGTGCTGTCGAT
* * * * **
14310781 CCTGCTACTCGTCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTG
126 CCTGCTACTCGTCCTACTACCACAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCA
14310846 TAT
191 TAT
* *
14310849 GCTTAGACATGGAATGAACTCCATATGCCTCAGCCAACACACGAAACGAGTGTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGTGTGCG-GCGCTCAA
*
14310914 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGACCCGGTCCCCCCTGCATGCTGTCGATC
64 CC-ACCGGAGAGGCAGAATGCACAAG-CGGGGATCGGACCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
14310979 CTGCTGCTGGTCCTACTACCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCAT
127 CTGCTACTCGTCCTACTACCACAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCAT
14311044 AT
192 AT
* * * *
14311046 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGTGTGC-GGCGCTCAA
* * * * * *
14311111 CCAGTCAGAGTGGTAGAATGCACAAGCCGGGGA-CCGACCCGGTCCCTCCTGCGTGCTGTCGATC
64 CCA-CCGGAGAGGCAGAATGCACAAG-CGGGGATCGGACCCGGTCCCCCCTGCGTGCTGTCGATC
14311175 CTGCTA-TCGT
127 CTGCTACTCGT
14311185 AACCCTCAGT
Statistics
Matches: 290, Mismatches: 38, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
194 4 0.01
195 8 0.03
196 114 0.39
197 163 0.56
198 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (193 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGCGCTCAACC
ACCGGAGAGGCAGAATGCACAAGCGGGGATCGGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
TACTCGTCCTACTACCACAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:14311542 original size:26 final size:26
Alignment explanation
Indices: 14311506--14311558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14311496 CCGGTCTGAT
14311506 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14311532 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14311558 C
1 C
14311559 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14311751 original size:26 final size:26
Alignment explanation
Indices: 14311713--14311765 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14311703 CTGGTCTGAT
14311713 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14311739 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14311765 C
1 C
14311766 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14314117 original size:26 final size:26
Alignment explanation
Indices: 14314088--14314140 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14314078 CTGATTTGAT
14314088 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
14314114 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
14314140 C
1 C
14314141 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:14314848 original size:26 final size:26
Alignment explanation
Indices: 14314810--14314862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14314800 GGCTCAAACT
*
14314810 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14314836 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14314862 C
1 C
14314863 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14315748 original size:26 final size:26
Alignment explanation
Indices: 14315711--14315763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14315701 CTGGTCTGAT
*
14315711 CTTAGACTTGGAATGAACTCTCTATG
1 CTTAGACATGGAATGAACTCTCTATG
*
14315737 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTCTATG
14315763 C
1 C
14315764 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTCTATG
Found at i:14315771 original size:368 final size:368
Alignment explanation
Indices: 14314994--14315946 Score: 1008
Period size: 368 Copynumber: 2.6 Consensus size: 368
14314984 TCCAGCTGGG
** * * * *
14314994 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGCGCTCAG
* ** *
14315059 CCGGT-CGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATC
65 CC-GTCCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCAATCCCCCCTACGTGCTATCGATC
* * * * *
14315123 CTGCTGCCGCAACCCTCGATCCGATTTGATCTTATGCTTAGAGTGGGAAT-AACTCCGTATGCCT
129 TTGCTACCGCAACCCTCGATCCG----G-TCTGAT-CTTAGACTGGGAATGAACTTCGTATGCCT
* * * *
14315187 AAGTCAACCCAC-GACACGAGCATGCGGGTGCTCAATCGGTCAAAGAGGCCGACCAGAGAGGCAG
188 AAGTCAACCCACGGA-ACGAGCGTGCGGGCGCTCAATCCGACAAAGAGGCCGACCAGAGAGGCAG
* * * ** * *
14315251 AATATACAAGCCAAGGATCGGCCTGATCCCTCGCAACATGCTTGTCGATCCTGCTACTGGTTCTG
252 AATACAAAAGCCAAGGATCGGCCCGATCCCTCGCAACATGCTTACCGATCCTGCTACTGGTCCTA
* *
14315316 CTGTCGGAACCCTCAGTCTGGTCTGATCATAGACTGGGAATGATCTTCGTAT
317 CTGTCGCAACCCTCAGTCTGGTCTGATCATAGACTGGGAATGAACTTCGTAT
* * *
14315368 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCATGAAACACGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACA-GCGTGCGGGCGCTCAG
* *
14315433 CCGTCCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCAAACCCCCCCTGCGTGCTATCGATC
65 CCGTCCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCC-AATCCCCCCTACGTGCTATCGATC
* * *
14315498 TTGCTACTGCAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCCAAGTC
129 TTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
* ** *
14315562 AACCCACGGAACGAGCGTGCGGGCGCTCAA-CCGACAGGAGAGGCC-AGCTGGAGAGGCAGAATG
193 AACCCACGGAACGAGCGTGCGGGCGCTCAATCCGACA-AAGAGGCCGA-CCAGAGAGGCAGAATA
** * ** * * * * *
14315625 CAAAAGTTAGGGATCGGCCCGATCCCTC-CTGCGTGC-TACCTATCTTGCTGCTGGTCCTATTGT
256 CAAAAGCCAAGGATCGGCCCGATCCCTCGCAACATGCTTACCGATCCTGCTACTGGTCCTACTGT
* ** * *
14315688 TGCAACCCTTGGTCTGGTCTGATCTTAGACTTGGAATGAACTCTC-TAT
321 CGCAACCCTCAGTCTGGTCTGATCATAGACTGGGAATGAACT-TCGTAT
* * *
14315736 GCTTAGACATGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGCGCTCAG
* ** * ** * * * * *
14315801 CTAG-CCAAAGAGGTAGAATGCACAAGCCGAGGACCGACCCTATCCCCCCTACGTGCTGTTGATC
65 C-CGTCCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCAATCCCCCCTACGTGCTATCGATC
* * * *
14315865 TTGCTACCACAACCCTCGATTCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCA
129 TTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
* *
14315930 AGCCACGAAACGAGCGT
194 ACCCACGGAACGAGCGT
14315947 CTGGACGCTG
Statistics
Matches: 484, Mismatches: 83, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
367 90 0.19
368 145 0.30
369 27 0.06
370 88 0.18
371 3 0.01
373 2 0.00
374 92 0.19
375 37 0.08
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (368 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAGCGTGCGGGCGCTCAGC
CGTCCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCAATCCCCCCTACGTGCTATCGATCTT
GCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
CCACGGAACGAGCGTGCGGGCGCTCAATCCGACAAAGAGGCCGACCAGAGAGGCAGAATACAAAA
GCCAAGGATCGGCCCGATCCCTCGCAACATGCTTACCGATCCTGCTACTGGTCCTACTGTCGCAA
CCCTCAGTCTGGTCTGATCATAGACTGGGAATGAACTTCGTAT
Found at i:14316603 original size:26 final size:26
Alignment explanation
Indices: 14316565--14316616 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14316555 CCGGTCAGAT
* *
14316565 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
14316591 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14316617 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14316849 original size:354 final size:353
Alignment explanation
Indices: 14315905--14316859 Score: 774
Period size: 342 Copynumber: 2.7 Consensus size: 353
14315895 CTTAGACTAG
* * * * * * * * *
14315905 GAATGAACTTCGTATGCCTAAGTCAAGCCACGAAACGAGCGT-CTGGACGCTGAACCAACCGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTAC-GGGCGCTCAGCCGACCGGA-
* * * * * * **
14315969 AA-GCATAATGCGTAAGCCGAGGTTTAGCTCGATCCCCCTCTGCGTGCTGCCGGTCCCACTACCA
64 AAGGCAGAATGCGAAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCTGCTACCA
* * ** * * ** * *
14316033 CAACCCTC-AGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACAA
129 TAACCCTCGA-TCCGGCCAGAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAACGA
* * * * * * * *
14316097 AACGAGCATTCGAGC-ACTCAGCCGGCCAGAGAGGTAGAATGCAG-AATCCAGGGATC-AGCCTG
193 AACGAGCGTACGGGCGA-TCAGCCGGCCGGAAAGGCAGAATGC-GCAAGCCAGGGATCGA-CCCG
* * * * * * *
14316159 GTCCACC--C-TGC-GT-G--C-T-AT-C-GATCCTGCTGCCGCAACCTTCGATCCGGTCTGATC
255 ATCCCCCTACATGCTGTCGACCTTGCTACTGGTCCTGCTACCGCAACCCTCGATCCGGTCAGATC
*
14316213 TTAGACTGGGAATGAACTCGTATGCTTAAACTGA
320 TTAGACCGGGAATGAACTCGTATGCTTAAACTGA
* * * *
14316247 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGTCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGACCGGAAA
* * * *
14316312 GGCATAATGCGAAAGTCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCTTGCTGCCATA
66 GGCAGAATGCGAAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCTGCTACCATA
* * * *
14316377 ACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAAT
131 ACCCTCGATCCGGCCAGAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAAC
** * * * * *
14316442 GAGTTTATGGGCTATCAGCCGGCCGGAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCC
196 GAGCGTACGGGCGATCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCC
*
14316507 CTACATGCTGTCGACCTTGCTACTGGTCCTGCTACCGTAACCCTCGATCCGGTCAGATCTTAGAC
261 CTACATGCTGTCGACCTTGCTACTGGTCCTGCTACCGCAACCCTCGATCCGGTCAGATCTTAGAC
*
14316572 CGGGAATGAACTCTGTATGCTTAGACATG-
326 CGGGAATGAACTC-GTATGCTTAAAC-TGA
* ** * * ** *
14316601 GAATGAACTCCGTATGTCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTTTGCCCG-TCGGAA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG-CCGACCGGAA
* * ** * * *
14316665 AGGCAGAATGC-ACAAGCCGGGGA-CTGGTTCGGTCCCCACT-TGCGTGCTGTCGATCCTGCTAT
65 AGGCAGAATGCGA-AAGCCGAGGATC-AGCCCGATCCCC-CTCTGCGTGCTGCCGATCCTGCTAC
* * ** *
14316727 CGTAACCTTCGATCCGGTCCA-ATTTTA-A-ATTGGGAATGAACTCTGTATGCCTAAGTCAACCA
127 CATAACCCTCGATCCGG-CCAGAGCTTAGACA-T-GGAATGAACTCTGTATGCCTAAGCCAACCA
* * * ** *
14316789 ACGAAACGAGCGTCCGGGCGCTGAGCCGG-TTGAAGAGGCATAATGCGCAAGCCAGGGATCGACC
189 ACGAAACGAGCGTACGGGCGATCAGCCGGCCGGAA-AGGCAGAATGCGCAAGCCAGGGATCGACC
14316853 CGATCCC
253 CGATCCC
14316860 TCTCTGCGTG
Statistics
Matches: 491, Mismatches: 95, Indels: 42
0.78 0.15 0.07
Matches are distributed among these distances:
341 2 0.00
342 207 0.42
343 4 0.01
344 1 0.00
345 3 0.01
346 2 0.00
347 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
352 2 0.00
353 55 0.11
354 203 0.41
355 8 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (353 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGACCGGAAA
GGCAGAATGCGAAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCTGCTACCATA
ACCCTCGATCCGGCCAGAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAAC
GAGCGTACGGGCGATCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCC
CTACATGCTGTCGACCTTGCTACTGGTCCTGCTACCGCAACCCTCGATCCGGTCAGATCTTAGAC
CGGGAATGAACTCGTATGCTTAAACTGA
Found at i:14317094 original size:26 final size:26
Alignment explanation
Indices: 14317065--14317117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14317055 CCAGTCCGTT
14317065 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14317091 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14317117 C
1 C
14317118 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14318730 original size:26 final size:27
Alignment explanation
Indices: 14318694--14318751 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
14318684 CTGGTTCAAT
*
14318694 CTTAGATTGGGAATGA-ACTCCGTATG-
1 CTTAGACTGGGAAT-ATACTCCGTATGC
*
14318720 CTTAGACTGGGGATATACTCCGTATGC
1 CTTAGACTGGGAATATACTCCGTATGC
14318747 CTTAG
1 CTTAG
14318752 TCAACCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 22 0.79
27 5 0.18
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATATACTCCGTATGC
Found at i:14318943 original size:25 final size:26
Alignment explanation
Indices: 14318915--14318966 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14318905 CTGGTTCGAT
*
14318915 CTTAGAC-TAGAATGAACTCTGTATG
1 CTTAGACATAGAATGAACTCCGTATG
*
14318940 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
14318966 C
1 C
14318967 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:14319202 original size:717 final size:718
Alignment explanation
Indices: 14318164--14319492 Score: 1738
Period size: 716 Copynumber: 1.9 Consensus size: 718
14318154 CTGTTGCTGG
* * * * * *
14318164 TCCTGCTACCGCAACCTTCGGTCCGATTCGATCTTAGATTGGGAATGAACTTTGCATGCTTAGAC
1 TCCTGCTACAGCAACCCTCAGTCCGATTCGATCTTAGACTGAGAATGAACTCTGCATGCTTAGAC
* * * *
14318229 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCAGTCGG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCAGTCAGCCGG
* * *
14318294 AGAGGCAAAATACACAAGCCAGGGATCAGCCTGATCCGCTCCTACGTGCTATCAATCCTGCTACT
131 AGAGGCAAAATACACAAGCCAGGGATCAGCCAGATCCGCCCCTACGTGCTATCAATCCTGCTACC
* ** *
14318359 ACAATCCTCGATCCGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGACAAACCACGAAATGA
196 ACAATCCTCGATCCGATCTTAAACTAAGAATGAGCTCCGTATGCCTAAGACAAACCACGAAACGA
*** * * *
14318424 GCGTTCGAGCACTGAGTTGGTTGGAGAGGCATAATGTGCAAGCCAGTGATCGACCCGGTCCCCCT
261 GCGTTCGAGCACTGAGCCAGCTAGAGAGGCATAATGCGCAAGCCAGTGATCGACCCGGTCCCCCT
* * *
14318489 CTGCGTGCTGCC-AGTCCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAA
326 CTGCGTGATACCGA-T-CCCGCTGCCACAACCCACAGTCCGGCTAGGGCTTAGACATGGAATGAA
* * *
14318553 CTCCTTATGCCTAACCCAACCCACGAAATC-GGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGA
389 CTCCCTATGCCTAACCCAACCCAC-AAAACGGGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGA
* * *
14318617 ATGCGCAAGCCGAGGATCGGCCCAATCCCTCCTATGTGCTACCGATCCTACT-ATAGCAACCCTC
453 ATGCGCAAGCCGAGGATCGACCCAATCCCTCCTAGGTGCTACCAATCCTACTGAT-GCAACCCTC
** * * *
14318681 GATCTGGTTCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGAT-ATACTCCGTAT
517 GATCTAATTCAATCTTAGACTGGGAATGAACTCCCTATCCTTAGACTGGGGATGA-ACTCCGTAT
* * * *
14318745 GCCTTAGTCAACCCATGAAATGAGTGTGCGGGTGCTCAATCGGTCAGAGAAGCCGATCAGAGAGG
581 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGGTCAGAGAAGCCGATCAGAGAGG
14318810 TAAAATGTGCAACCCATGGATCAACTTGGGCCCCCTTACATGCTGTCGATCCTGCTGCTGGTCCT
646 TAAAATGTGCAACCCATGGATCAACTTGGGCCCCCTTACATGCTGTCGATCCTGCTGCTGGTCCT
14318875 TCTATCGA
711 TCTATCGA
* * *
14318883 TCCTGCTACAGCAACCCTCAGTCTGGTTCGATCTTAGACT-AGAATGAACTCTGTATGCTTAGAC
1 TCCTGCTACAGCAACCCTCAGTCCGATTCGATCTTAGACTGAGAATGAACTCTGCATGCTTAGAC
* * *
14318947 ATGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGCGCTCAGTCTGCCTG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCAGTCAGCCGG
* * * ** * ** * * * * *
14319012 AGAGGTAGAATGCGTAAGTCAGGGATTGGCCAGATCC-CCCCTGCGTGCTGTCGATCCTGGTTCC
131 AGAGGCAAAATACACAAGCCAGGGATCAGCCAGATCCGCCCCTACGTGCTATCAATCCTGCTACC
* * *
14319076 ACAATCTTCGATCCGATCTTAAA-TCAAGAATGAGCTTCGTATGCCTAAGACAACCCACGAAACG
196 ACAATCCTCGATCCGATCTTAAACT-AAGAATGAGCTCCGTATGCCTAAGACAAACCACGAAACG
* * * * *
14319140 AGCGTTTGGGCAGTGAGCCAGCTAGAGAGGCATAATGCGCAAGCC-GATGATCGGCTCGGTCCCC
260 AGCGTTCGAGCACTGAGCCAGCTAGAGAGGCATAATGCGCAAGCCAG-TGATCGACCCGGTCCCC
* * * * * *
14319204 TTCTGTGTGATATCGATCTCGCTGCCACAACCCACGGTCTGGCTAGGGCTTAGACATGGAATGAA
324 CTCTGCGTGATACCGATCCCGCTGCCACAACCCACAGTCCGGCTAGGGCTTAGACATGGAATGAA
* * * * *
14319269 CTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGTGGGCTCTCAACTGACCGGAGAGGCAGAA
389 CTCCCTATGCCTAACCCAACCCACAAAACGGGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAA
* * * * * ** * * *
14319334 TGCGTAAGCCGAGGATCGACCCGATCCCTCTTGGGTTCTGTCAATCCTGCTGCTGCAACCCTCGG
454 TGCGCAAGCCGAGGATCGACCCAATCCCTCCTAGGTGCTACCAATCCTACTGATGCAACCCTCGA
14319399 TCTAATTCAATCTTAGACTGGGAATGAACTCCCTATCCTTAGACTGGGGATGAACTCCGTATGCC
519 TCTAATTCAATCTTAGACTGGGAATGAACTCCCTATCCTTAGACTGGGGATGAACTCCGTATGCC
14319464 TAAGTCAACCCACGAAACGAGCGTGCGGG
584 TAAGTCAACCCACGAAACGAGCGTGCGGG
14319493 CACTCAGGCG
Statistics
Matches: 515, Mismatches: 89, Indels: 15
0.83 0.14 0.02
Matches are distributed among these distances:
715 4 0.01
716 231 0.45
717 138 0.27
718 108 0.21
719 34 0.07
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (718 bp):
TCCTGCTACAGCAACCCTCAGTCCGATTCGATCTTAGACTGAGAATGAACTCTGCATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCAGTCAGCCGG
AGAGGCAAAATACACAAGCCAGGGATCAGCCAGATCCGCCCCTACGTGCTATCAATCCTGCTACC
ACAATCCTCGATCCGATCTTAAACTAAGAATGAGCTCCGTATGCCTAAGACAAACCACGAAACGA
GCGTTCGAGCACTGAGCCAGCTAGAGAGGCATAATGCGCAAGCCAGTGATCGACCCGGTCCCCCT
CTGCGTGATACCGATCCCGCTGCCACAACCCACAGTCCGGCTAGGGCTTAGACATGGAATGAACT
CCCTATGCCTAACCCAACCCACAAAACGGGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATG
CGCAAGCCGAGGATCGACCCAATCCCTCCTAGGTGCTACCAATCCTACTGATGCAACCCTCGATC
TAATTCAATCTTAGACTGGGAATGAACTCCCTATCCTTAGACTGGGGATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGGTCAGAGAAGCCGATCAGAGAGGTAAAA
TGTGCAACCCATGGATCAACTTGGGCCCCCTTACATGCTGTCGATCCTGCTGCTGGTCCTTCTAT
CGA
Found at i:14319808 original size:26 final size:26
Alignment explanation
Indices: 14319777--14319829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14319767 CTGGTCTGAT
*
14319777 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14319803 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14319829 C
1 C
14319830 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14320116 original size:355 final size:354
Alignment explanation
Indices: 14319228--14320271 Score: 1145
Period size: 355 Copynumber: 2.9 Consensus size: 354
14319218 GATCTCGCTG
* * * *
14319228 CCACAACCCACGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * * *
14319293 AAAACGGGCGTGTGGGCTCTCAACTGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGA
66 GAAACGGGCGTGCGGGCACTCAGCCGGCC-GAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGA
* * * * * *
14319358 TCCCTCTTGGGTTCTGTCAATCCTGCTGCTGCAACCCTCGGTCTAAT-TCAATCTTAGACTGGGA
129 TCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGATCT-AATCTTAGACTGGGA
* * *
14319422 ATGAACTCCCTATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
193 ATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *
14319487 TGCGGGCACTCAGGCGACCGGAGAGGCCGACTGAAGAGGCATAATGCGCAAGTCGGGGATCAACT
258 TGCGAGCGCTCA---G-TC---GA--CCG---G-AGAGGCATAATGCACAAGTCGGGGATCAGCC
*
14319552 CGAT-CCCTCTCTGCATGCTACCGATCCCACTGCCAGTCCTACTG
310 CGATCCCCTCTCTGCATGCTACCGATCCCACTGCCAGTCCTACTA
* * * *
14319596 CCACAATCGTCAG-CCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * *
14319660 GAAACGGGTGTGCAGGCACTCAGCCGGCCGAAAAGGCAAAATGCGCAAGTCGGGGATTGGCCCGA
66 GAAACGGGCGTGCGGGCACTCAGCCGGCCG-AGAGGCAGAATGCGCAAG-CCGGGATCGGCCCGA
* * ** ** * *
14319725 TTCCCCCTGCATGCTGTCGATCCCACTGCTGCAACCCTCACTCTGGTCTGATCTTAGACTGGGAA
129 TCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAA
* * * *
14319790 TGAACTCTGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGTGT
194 TGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
*
14319855 GCGAGCGCTCAGTCGACCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCGATCCCCT-TCTG
259 GCGAGCGCTCAGTCGACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCTCTCTG
* * *
14319919 CGTGCTACCGATCCCGCTG-CAGATCCTGCTA
324 CATGCTACCGATCCCACTGCCAG-TCCTACTA
* *
14319950 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * *
14320015 GAAACGAGCATACGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAA
66 GAAACGGGCGTGCGGGCACTCAGCCGGCC-GAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGA
** * *
14320080 TCCCCCCTGCGTGCTACCGATCCTGTTG-TCGCAACCCTCGGT-TCGATCCAATCTTAGACTGGG
129 TCCCCCCTGCGTGCTGTCGATCCTGCTGCT-GCAACCCTCGGTCT-GATCTAATCTTAGACTGGG
* * * *
14320143 AATGAACTCCGTATGCTTAGAAAT-GGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAG
192 AATGAACTCCGTATGCTTAG-AATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
14320207 CGTGC-AGGCGCTCAGTCGACCGGATAGGCATAATGCACAAGCCGGGGATC-GACCCGATCACCT
256 CGTGCGA-GCGCTCAGTCGACCGGAGAGGCATAATGCACAAGTCGGGGATCAG-CCCGATCCCCT
14320270 CT
319 CT
14320272 TCCGTGCTGT
Statistics
Matches: 569, Mismatches: 93, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
353 3 0.01
354 73 0.13
355 259 0.46
356 4 0.01
358 3 0.01
360 2 0.00
363 1 0.00
364 1 0.00
366 1 0.00
367 210 0.37
368 12 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (354 bp):
CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGGGCGTGCGGGCACTCAGCCGGCCGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATC
CCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATG
AACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GAGCGCTCAGTCGACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCTCTCTGCA
TGCTACCGATCCCACTGCCAGTCCTACTA
Found at i:14320319 original size:184 final size:183
Alignment explanation
Indices: 14319973--14320342 Score: 436
Period size: 184 Copynumber: 2.0 Consensus size: 183
14319963 TCCGGCTGGG
* * * * * *
14319973 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCATACGGGCACTCAG
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAGCATACAGGCACTCAG
* * * *
14320038 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAATCCCCCCTGCGTGCTACCGATCC
66 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCCCCTCCGTGCTACCGATCC
** * * * *
14320103 TGTTGTCGCAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
131 TACTGCCACAACCCTCGATTCGA-CCAATCTTAGACTAGGAATGAACTCCGTAT
* * *
14320157 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAGCATACAGGCACTCAG
* * * * * * * * **
14320222 TCGACCGGATAGGCATAATGCACAAGCCGGGGATCGACCCGATCACCTCTTCCGTGCTGTCGATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAATC-CCCCCTCCGTGCTACCGATC
*
14320287 CTACTGCCACAACCCTTGATTCG-CCTAATCTTAGACTAGGAATGAACTCCGTAT
130 CTACTGCCACAACCCTCGATTCGACC-AATCTTAGACTAGGAATGAACTCCGTAT
14320341 GC
1 GC
14320343 CTAAGTCAAC
Statistics
Matches: 154, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
183 2 0.01
184 120 0.78
185 32 0.21
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (183 bp):
GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAGCATACAGGCACTCAG
CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCCCCTCCGTGCTACCGATCC
TACTGCCACAACCCTCGATTCGACCAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:14321838 original size:158 final size:156
Alignment explanation
Indices: 14321378--14321880 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 156
14321368 AACTCCGTAT
* **
14321378 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
14321443 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGATCCCCCCCTA-CTTGCTGTCGAT
66 CCAGCCGAAGAGGCAGAATGCGAAAG-CGGGGATCGACCGGAT-CCCCCC-AGCGTGCTGTCGAT
* * *
14321507 CCTGCTGTCACAACCCTCAGTTCGGTCCGA
128 CCTGCTGTCACAACCCTC-GGTCTGACCGA
** * * * * * *
14321537 TTTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* *** * *
14321601 GCCAGCCGAAGAGGCATAATGCGAAAGTTAGGATCGATCCGG-TCCCCCTCTGCGTGCTGTCGGT
65 GCCAGCCGAAGAGGCAGAATGCGAAAGCGGGGATCGA-CCGGATCCCCC-CAGCGTGCTGTCGAT
* * * *
14321665 CCCGCTGCCACAACCCTCGGTCTGACTGGG
128 CCTGCTGTCACAACCCTCGGTCTGAC-CGA
* * * * *
14321695 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCTGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
14321760 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCGGATCCCCCCAGCGTGCTGCCGATCT
66 CCAGCCGAAGAGGCAGAATGCGAAAG-CGGGGATCGACCGGATCCCCCCAGCGTGCTGTCGATCC
* ** * *
14321825 TGCAGTCGTAACCCTCGGTCTGGTCTGA
130 TGCTGTCACAACCCTCGGTCT-GACCGA
* *
14321853 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14321881 TTGGACTGGG
Statistics
Matches: 271, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 11 0.04
158 168 0.62
159 92 0.34
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAGCCGAAGAGGCAGAATGCGAAAGCGGGGATCGACCGGATCCCCCCAGCGTGCTGTCGATCCT
GCTGTCACAACCCTCGGTCTGACCGA
Found at i:14322251 original size:26 final size:26
Alignment explanation
Indices: 14322222--14322274 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14322212 CCGGTCTGAT
*
14322222 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14322248 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14322274 C
1 C
14322275 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14322499 original size:355 final size:361
Alignment explanation
Indices: 14321656--14322548 Score: 1065
Period size: 368 Copynumber: 2.5 Consensus size: 361
14321646 CCCTCTGCGT
* * * *
14321656 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * * *
14321721 GCCTAAGCCAACCCACGAAATGGGTGTGCTGGCACTCAGCCAGCC-GAAGAGGCAGAATGCGTAA
66 GCCTAAGCCAACCCATGAAACGAGTGTGCAGGCACTCAGCGA-CCGGAA-AGGCAGAATGCGTAA
* * * *
14321785 GCCGGGGATCGGC-CGGATCCCCCC-AGCGTGCTGCCGAT-CTTGCAGTCGTAACCCTCGGTCTG
129 GCCAGGGATCGGCTCGG-TCCCCCCTA-CGTGCTGTCGATCCTTGCAGTCG-AACCCTCGATCCG
* *
14321847 GTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTGGACTGGGGATGAACTCCGTATGCCTAAG
191 GTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * *
14321912 CCAACCCACGAAATGAGCGTGCGGGTGCTCAACCGACCCAAGAGGTCGATCAGAGAGGCATAATG
256 CCAACCCACGAAATAAGAGTGCGGGCGCTCAA-CGA-CC-AGA-GCCGA--AGAGAGGCATAATG
* * * * * *
14321977 CGCAAGTCAGGGATTAGCCCGACCCCCCTCTGTGTGCTATCGATCCC
315 CGCAAGTCAGGGATCAACCCAACCCCCCTCTGCGTGCCATCAATCCC
* *
14322024 GCTGCCAGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * *
14322089 GCCTAATCCAACCCATGAAACGAGTGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGTGTGCAGGCACTCAG-CGACCGGAAAGGCAGAATGCGTAAG
* * *
14322154 CCAGGGATCGGCTCGGTCCCCCCTATGTACTGTCGATCCTACTGCAG-C-AACCTTCGATCCGGT
130 CCAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCT--TGCAGTCGAACCCTCGATCCGGT
* * *
14322217 CTGATCTTAGACTGGGAATGACCTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
193 CTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCC
14322282 AACCCACGAAATAAGAGTGCGGGCGCTC-A-G-CC-GA-CCG-A-AGAGGCATAATGCGCAAGTC
258 AACCCACGAAATAAGAGTGCGGGCGCTCAACGACCAGAGCCGAAGAGAGGCATAATGCGCAAGTC
* * * *
14322340 AGGGATCAACTCAATCCCCCTTTGCGTGCCGTCAATCCC
323 AGGGATCAACCCAACCCCCCTCTGCGTGCCATCAATCCC
* * *
14322379 GCTGTCGGTCCTGCTACCATAACCCTGGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCGTAT
1 GCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* ** * * *
14322444 GCCTAAGCCAACCCATGAAACAAGCATGCAGGCACTCAGCTGATCGGAAAGGCAGAATGCATAAA
66 GCCTAAGCCAACCCATGAAACGAGTGTGCAGGCACTCAGC-GACCGGAAAGGCAGAATGCGTAAG
* * * * *
14322509 TCAAGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCCT
130 CCAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCT
14322549 GCTATTGGTC
Statistics
Matches: 455, Mismatches: 62, Indels: 29
0.83 0.11 0.05
Matches are distributed among these distances:
354 1 0.00
355 195 0.43
356 1 0.00
359 2 0.00
361 2 0.00
363 2 0.00
365 1 0.00
367 1 0.00
368 234 0.51
369 10 0.02
370 1 0.00
371 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (361 bp):
GCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAACGAGTGTGCAGGCACTCAGCGACCGGAAAGGCAGAATGCGTAAGC
CAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTTGCAGTCGAACCCTCGATCCGGTCTG
ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAAC
CCACGAAATAAGAGTGCGGGCGCTCAACGACCAGAGCCGAAGAGAGGCATAATGCGCAAGTCAGG
GATCAACCCAACCCCCCTCTGCGTGCCATCAATCCC
Found at i:14322822 original size:26 final size:26
Alignment explanation
Indices: 14322774--14322823 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
14322764 TTTTGATCTA
*
14322774 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCTATATGCTT
*
14322800 AGACTGGGGATGAACT-TCATATGC
1 AGACTGGGAATGAACTCT-ATATGC
14322824 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTATATGCTT
Found at i:14323568 original size:26 final size:26
Alignment explanation
Indices: 14323492--14323570 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
14323482 GGCTCAAAAT
*
14323492 CTTAGAC-TGGGAATGCAA-TCCGTACG
1 CTTAGACAT-GGAATG-AACTCCGTATG
14323518 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
14323544 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14323570 C
1 C
14323571 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.04
26 46 0.94
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14323861 original size:185 final size:185
Alignment explanation
Indices: 14323518--14323863 Score: 475
Period size: 185 Copynumber: 1.9 Consensus size: 185
14323508 AATCCGTACG
* * *
14323518 CTTAGACATGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC
1 CTTAGACATGGAATGAACTCCATAAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
14323583 ACGAAACGTGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGACCT
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGACCT
* *
14323648 GGTCCCTTCCTACGTGCTGTCAATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
131 GATCCCTTCCTACGTGCTATCAATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
* *
14323703 CTTAGAC-TGGGAATGAACTCCATAAGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
1 CTTAGACAT-GGAATGAACTCCATAAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
** * * *
14323766 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATC-AG
64 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGAC
* *
14323830 CTCGATCCCCTT-CTGCGTGCTATCGATCCTGCTG
129 CT-GAT-CCCTTCCTACGTGCTATCAATCCTGCTG
14323864 TCAGTCCTGC
Statistics
Matches: 140, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
184 5 0.04
185 130 0.93
186 5 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
CTTAGACATGGAATGAACTCCATAAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCGACCT
GATCCCTTCCTACGTGCTATCAATCCTGCTGCCACAACCCTCAGTCCGGTCTGAT
Found at i:14324586 original size:26 final size:26
Alignment explanation
Indices: 14324550--14324602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14324540 GCGATCTGAT
*
14324550 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14324576 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14324602 C
1 C
14324603 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14325234 original size:26 final size:26
Alignment explanation
Indices: 14325196--14325274 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
14325186 GGCTCAAAAT
*
14325196 CTTAGAC-TGGGAATGAAATCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14325222 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14325248 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14325274 C
1 C
14325275 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14325749 original size:159 final size:157
Alignment explanation
Indices: 14325454--14325948 Score: 439
Period size: 159 Copynumber: 3.1 Consensus size: 157
14325444 GCTTAGAAAT
* * ** * **
14325454 GGAATGAACTTCGTATGCCTAAGCCAACCCACAAGACGAGCGTTTGTGCAGCCGTTCAACCGATC
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCA--C--TCAACCGGCC
* * * * **
14325519 GAAGAGGCAGAATGCGCAAGCCAGGGAT-TGGCTCGGTCCCCCCTATGTGCTGTCGATCCTGCTA
62 GGAGAGGCAGAATGCGCAAGCCGGGGATCTGCCT-GGTCCCCTCTGCGTGCTGTCGATCCTGCTA
* *
14325583 TCGCAACCGTCAGTCCGGTCTGATCTTAGACTG
126 CCGCAACCCTC-GTCCGGTCTGATCTTAGACTG
* * * ** * *
14325616 GGAATGAGCTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGCCAGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGGCC-GGA
* * * * *
14325681 GAGGCATAATGAGCAAGCCGGGGATCTGCCTGGTCCCCTCTGCGTGCTGTCGGTCCCGCTACCAC
65 GAGGCAGAATGCGCAAGCCGGGGATCTGCCTGGTCCCCTCTGCGTGCTGTCGATCCTGCTACCGC
* **
14325746 AACCCTCGATCCAG-CTGGGGCTTAGACAT-
130 AACCCTCG-TCCGGTCT-GATCTTAGAC-TG
* * * * ** *
14325775 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGTGCTCAACTGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGGCCGGAG
* *
14325840 AGGCAGAATGCGCAAGCCGGGGATC-GACC-CGTTCCCT-TGCGTGCTG-CTGATCCTGCTACCG
66 AGGCAGAATGCGCAAGCCGGGGATCTG-CCTGGTCCCCTCTGCGTGCTGTC-GATCCTGCTACCG
* *
14325901 CAACCCTCGGTCCGATCCT-ATCTTAGATTG
129 CAACCCTC-GTCCGGT-CTGATCTTAGACTG
14325931 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14325949 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 57, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
155 2 0.01
156 53 0.20
157 8 0.03
158 40 0.15
159 116 0.44
160 6 0.02
162 40 0.15
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGGCCGGAG
AGGCAGAATGCGCAAGCCGGGGATCTGCCTGGTCCCCTCTGCGTGCTGTCGATCCTGCTACCGCA
ACCCTCGTCCGGTCTGATCTTAGACTG
Found at i:14325968 original size:25 final size:26
Alignment explanation
Indices: 14325922--14325973 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14325912 CCGATCCTAT
*
14325922 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14325948 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14325973 C
1 C
14325974 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14326583 original size:11 final size:11
Alignment explanation
Indices: 14326552--14326584 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
14326542 CGCTTAGGCT
14326552 CTCCAGCGATG
1 CTCCAGCGATG
14326563 CTCC-GACGATG
1 CTCCAG-CGATG
14326574 CTCCAGCGATG
1 CTCCAGCGATG
14326585 GTGCCTCGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCAGCGATG
Found at i:14327069 original size:159 final size:159
Alignment explanation
Indices: 14326654--14327092 Score: 467
Period size: 159 Copynumber: 2.8 Consensus size: 159
14326644 GGCTCAAAAT
* * *
14326654 CTTAGATCA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
1 CTTAGA-CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-
* * * *
14326718 T-CAGCCGGAGAGGCAGAATGCACAAACCGGGGATCAACCCGATCCCCCCGTATGTGCTGTCGAT
64 TCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCGTATGTGCTGCCGAT
* * *
14326782 CCTACTACCTCAACCCTCAGTCCGATCCGAT
129 CCCACTACCACAACCCTCAGTCCGATCCGAG
* * * * *
14326813 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAT
* * * ** *
14326877 CCGGCCGAAGAGGCATAATGCACAAGCCAGGGATTGGCCCGATCCCCCTC-TGTGTGCTGCCGAT
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCC-CGTATGTGCTGCCGAT
* * * * * *
14326941 CCCGCTGCCACAACCCTCGGTCCG-GCTGGGG
129 CCCACTACCACAACCCTCAGTCCGATC-CGAG
* * *
14326972 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCATC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCATC
* ** * * *
14327037 CGGCCGGAGAGGCAGAATACGTAAGTCGGGGATCAGCCTGATCCCCCC-TACGTGCT
66 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCGTATGTGCT
14327093 TCTGATCTTG
Statistics
Matches: 227, Mismatches: 47, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
158 9 0.04
159 216 0.95
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCATC
CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCGTATGTGCTGCCGATCC
CACTACCACAACCCTCAGTCCGATCCGAG
Found at i:14327546 original size:25 final size:26
Alignment explanation
Indices: 14327509--14327560 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
14327499 CTGGTCTGAT
14327509 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14327534 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14327560 C
1 C
14327561 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14328418 original size:26 final size:26
Alignment explanation
Indices: 14328389--14328441 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14328379 CCAGTCAAAT
14328389 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
14328415 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14328441 C
1 C
14328442 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14328710 original size:159 final size:159
Alignment explanation
Indices: 14328520--14328915 Score: 399
Period size: 159 Copynumber: 2.5 Consensus size: 159
14328510 GACCAACCCA
14328520 GTCCCCC-CATGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGG
1 GTCCCCCTC-TGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGG
* * * * * * * ** *
14328584 GAATGAACTCCGTATGCCTAAGTCAACTAACGAAACGAGTGTTCGGCCGCAGAGCTGGTCGGAGA
65 GAATGAACTCCGTATGCCTAAGCCAACCAACAAAAAGAGCGTACGGCCGCACAGCCAGTCAGAGA
* *
14328649 GGCATAATGTGCAAGCCGGGGATCGG-CTCG
130 GGCAGAATGCGCAAGCCGGGGATCGGTC-CG
* * * * **
14328679 GTCCCCCTCTGCCTGCTATCGATTCC-GCTGCCACAACCCTCGGTCC-AGCTAGGGCTTAGACAT
1 GTCCCCCTCTGCGTGCTGTCGA-TCCTGCTGCCACAACCCTCGGTCCGATC-CGATCTTAGAC-T
* * * * ** *
14328742 -GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAAGGGCGTACGGGTGCTCAGCCAGTCAGA
63 GGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAAAGAGCGTACGGCCGCACAGCCAGTCAGA
*
14328806 GAGGCAGAATGCGCAAGCTGGGGATCGGTCCG
128 GAGGCAGAATGCGCAAGCCGGGGATCGGTCCG
* * * * * * * *
14328838 ATCCCCCT-TACGTGCTGTCGATCCTGCTACCGCAACCCTTGATCTGGTCCGATCTTAGACTGGG
1 GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGG
14328902 AATGAACTCCGTAT
66 AATGAACTCCGTAT
14328916 ACTTAGCTTG
Statistics
Matches: 188, Mismatches: 41, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 50 0.27
159 128 0.68
160 6 0.03
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.21
Consensus pattern (159 bp):
GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCAACAAAAAGAGCGTACGGCCGCACAGCCAGTCAGAGAG
GCAGAATGCGCAAGCCGGGGATCGGTCCG
Found at i:14328792 original size:882 final size:874
Alignment explanation
Indices: 14326654--14328979 Score: 2734
Period size: 879 Copynumber: 2.6 Consensus size: 874
14326644 GGCTCAAAAT
* **
14326654 CTTAGATCA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
1 CTTAGA-CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAG
* * * * * **
14326718 TCAGCCGGAGAGGCAGAATGCA-CAAACCGGGGATCAACCC-GATCCCCCCGTATGTGCTGTCGA
65 CCA-TCGAAGAGGCAGAAT-AAGC-AAGCGGGGATCAACCCAG-TCCCCCC-TGCGTGCTGTCGA
* * *
14326781 TCCTACTACCTCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGT
125 TCCTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
14326846 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCACAAGCCAGGGAT
190 CAACCCACGAAACGAGCGTGC-GGCGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGAT
* * ** * *
14326911 TGGCCCGATCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTA
254 TGGCCCGGTCCCCCTCTGCGTGCTATCGATTCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTA
* * *
14326976 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCA-TCCGG
319 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAAGGGCGTGCGGGTGCTCAGT-CGA
* * * * * *
14327040 CCGGAGAGGCAGAATACGTAAGTCGGGGATCAGCCTGATCCCCCCTACGTGCT-TCTGATCTTGC
383 CC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTC-GATCCTGC
*
14327104 TGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGA
446 TGT-GCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGGA
* * * *
14327169 TGAAC-TCTGTATGCCTAAGTCAACTCATGAAATGACCGTGCGGGTGCTC-AGCCAGTCGGAGAG
510 TGAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCGCTCAAGCCAGTCGGAGAG
* * * * *
14327232 GTCGGTCGGATAGTAATAATGCGCAAGTTGGAGATCAGCCCGATCCTCCTCTACGTCCTGCCAAT
573 GTCGATCGAAGAGGAATAATGCGCAAGTCGGAGATCAGCCCGATCCTCCTCTACGTCCTGCCAAT
*
14327297 CCAGCTGTCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCGT
638 CCAGCTGCCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCGT
** * * * *
14327362 ATACCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCTAGCCGGAGAGGTAGAATGCGCA
703 ATACCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTAAGCTAGCCAGAGAGGTAGAATGCACA
* * * *
14327427 AGTCAGGAATCGGCCAGATCCCTCTTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTGCTGCAAC
768 AGTCAGGAATCGACCAGATCCCTCCTACGTGCTGTCGATCCTGCTACTGGTCCTGCTGCCGCAAC
* ** ** *
14327492 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCGTATG
833 CCTAGGTCCAGTCAAATCTTAGACTGGGAATGAACTCATATG
* * *
14327534 CTTAGACATGGAATGGACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAG-
* ** *** *
14327599 CCGTC-AGAGAGGCAGAATGCGCAAGCTGGGGATCGGTCTAGTCCCCCCTGCGTGCTGTCGATCC
65 CCATCGA-AGAGGCAGAATAAGCAAGC-GGGGATCAACCCAGTCCCCCCTGCGTGCTGTCGATCC
* * * * * * *
14327663 TACTACCGCAACACTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGACTAAGTCAA
128 TACTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
14327728 CCCACAAAACGAGCGTGCGAGCACTGAGCCGGTCGGAAAGGCATAATGCACAAGCCGGGGATTAG
193 CCCACGAAACGAGCGTGCG-GCGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATTGG
* * * ** * *
14327793 CCCAGTCCCTCC-CTGCGTGCTTTC-AGTGT-CGCTGCCACAACCCACATTTCGGC-AGGGGATT
257 CCCGGTCCC-CCTCTGCGTGCTATCGA-T-TCCGCTGCCACAACCCTCGGTCCGGCTA-GGGCTT
*
14327854 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA-GGCGTGCGGGTGCTCAGTCG
318 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-AAAAAGGGCGTGCGGGTGCTCAGTCG
* * ** *
14327918 ACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCCGC
382 ACCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGC
*
14327983 TGTGACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT-TCACTTAGACTGGGG
446 TGTG-CAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT-ACTTAGACTGGGG
* * * *
14328047 ATGAACTTCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGAGCGCTCAATCGA-TCGGAGAG
509 ATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG-GCGCTCAAGCCAGTCGGAGAG
* * * * * * *
14328111 GTCGATCGAAGAGGCATAATGCGCAAGTCGGGGATCAGGCCGATCC-CCTTCTATGTGCTGTCGA
573 GTCGATCGAAGAGGAATAATGCGCAAGTCGGAGATCAGCCCGATCCTCC-TCTACGTCCTGCCAA
*
14328175 TCCCGCTGCCGGTCCTGCTGCCACAACCCTC-AGTCC-AGCTGGGGCTTAGACATGGAATGAACT
637 TCCAGCTGCCGGTCCTGCTGCCACAACCCTCGA-TCCGA-CT-GGGCTTAGACATGGAATGAACT
* * * ** * *
14328238 CTGTATGCCTAAGCCAACCTAAAAAATTAGCGTGCGGGCGTTAAGCTGGCCAGAGAGGTAGAATG
699 CCGTATACCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTAAGCTAGCCAGAGAGGTAGAATG
* ** * * * *
14328303 CATAAGTTGGGGATCGACTCGGTTTCCC-CCTACGTG-TG-CTGATCCTGCTATTGGTCCTGCTG
764 CACAAGTCAGGAATCGAC-CAG-ATCCCTCCTACGTGCTGTC-GATCCTGCTACTGGTCCTGCTG
14328365 CCGCAACCCTAGGTCCAGTCAAATCTTAGACTGGGAATGAACTCCATATG
826 CCGCAACCCTAGGTCCAGTCAAATCTTAGACTGGGAATGAACT-CATATG
*
14328415 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAGC
* *
14328480 CTATCGAAGAGGTAGAATAAGCAAGTCGGGGACCAACCCAGTCCCCCCATGCGTGCTGTCGATCC
66 C-ATCGAAGAGGCAGAATAAGCAAG-CGGGGATCAACCCAGTCCCCCC-TGCGTGCTGTCGATCC
* * *
14328545 TGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
128 TACTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * * ** *
14328610 CTAACGAAACGAGTGTTCGGCCGCAGAGCTGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCGG
193 CCCACGAAACGAGCGTGCGG-CGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATTGG
* * *
14328675 CTCGGTCCCCCTCTGCCTGCTATCGATTCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGAC
257 CCCGGTCCCCCTCTGCGTGCTATCGATTCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGAC
* * * * *
14328740 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAAGGGCGTACGGGTGCTCAGCCAGTCAG
322 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAAGGGCGTGCGGGTGCTCAGTC-GACCG
* * * **
14328805 AGAGGCAGAATGCGCAAGCTGGGGATCGGTCCGATCCCCCTTACGTGCTGTCGATCCTGCTACCG
386 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCT-GTG
* * * *
14328870 CAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACTTAG-CTTGGGGATGAA
450 CAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGAC-TGGGGATGAA
* * *
14328934 CTCCGTATGCGTAAGTCAACCCGTGAAACGAGCGTGCGGACGCTCA
514 CTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG-CGCTCA
14328980 GCCGACCAGA
Statistics
Matches: 1215, Mismatches: 188, Indels: 84
0.82 0.13 0.06
Matches are distributed among these distances:
878 10 0.01
879 466 0.38
880 244 0.20
881 118 0.10
882 370 0.30
883 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (874 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAGC
CATCGAAGAGGCAGAATAAGCAAGCGGGGATCAACCCAGTCCCCCCTGCGTGCTGTCGATCCTAC
TACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGCGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATTGGCCCG
GTCCCCCTCTGCGTGCTATCGATTCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCACAAAAAGGGCGTGCGGGTGCTCAGTCGACCGAGAGG
CAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTGCAACCC
TTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGGATGAACTTCGTA
TGCCTAAGTCAACCCATGAAACGAGCGTGCGGCGCTCAAGCCAGTCGGAGAGGTCGATCGAAGAG
GAATAATGCGCAAGTCGGAGATCAGCCCGATCCTCCTCTACGTCCTGCCAATCCAGCTGCCGGTC
CTGCTGCCACAACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAA
CCCAAAAAACGAGCGTGCGGGCGCTAAGCTAGCCAGAGAGGTAGAATGCACAAGTCAGGAATCGA
CCAGATCCCTCCTACGTGCTGTCGATCCTGCTACTGGTCCTGCTGCCGCAACCCTAGGTCCAGTC
AAATCTTAGACTGGGAATGAACTCATATG
Found at i:14329953 original size:26 final size:26
Alignment explanation
Indices: 14329914--14329967 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
14329904 GGTTCGATCT
*
14329914 TAGACTGGGAATGAACTTCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
14329940 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
14329966 TA
1 TA
14329968 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:14330678 original size:26 final size:25
Alignment explanation
Indices: 14330635--14330686 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14330625 GGCTCAAAAT
*
14330635 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
14330660 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
14330686 C
1 C
14330687 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:14330958 original size:158 final size:157
Alignment explanation
Indices: 14330659--14331061 Score: 429
Period size: 158 Copynumber: 2.5 Consensus size: 157
14330649 AACTCCGTAT
* *
14330659 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGTGGGTG-TTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTT-A
** * * * * *
14330723 GCCTTCCGGAGAGGTAGAATACGAAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGTTGTCGATC
65 GCGGT-CGGAGAGGCAGAATGCGAAAGACGAGGATCAGCCCGGTCCCCCCTACATGCTGTCGATC
* **
14330788 CTACTGCTACAACCCTCAGTTTGGTCAGA
129 CCACTGCTACAACCCTCAGTCCGGTCAGA
* * *
14330817 TCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTTA
* * * * * * * *
14330881 GCAGGTCGAAGAGGCATAATGCGTAGGATGGGGATCAGCCCGGTCTCCCTCTGCATGCT-TCGAT
65 GC-GGTCGGAGAGGCAGAATGCGAAAGACGAGGATCAGCCCGGTC-CCCCCTACATGCTGTCGAT
* ** *
14330945 CCCACTAGC-ACAACCTTCAGTCCGGTTGGG
128 CCCACT-GCTACAACCCTCAGTCCGGTCAGA
* *
14330975 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCT-TGGGCACTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGTGGGCGCTTA
*
14331039 GCCGGTTGGAGAGGCAGAATGCG
65 G-CGGTCGGAGAGGCAGAATGCG
14331062 CAAGCTAGGG
Statistics
Matches: 202, Mismatches: 35, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.00
158 184 0.91
159 17 0.08
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTTAG
CGGTCGGAGAGGCAGAATGCGAAAGACGAGGATCAGCCCGGTCCCCCCTACATGCTGTCGATCCC
ACTGCTACAACCCTCAGTCCGGTCAGA
Found at i:14331286 original size:19 final size:19
Alignment explanation
Indices: 14331262--14331299 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14331252 CCCCCTCTAT
14331262 GTGCTGCCGATCCCACTGC
1 GTGCTGCCGATCCCACTGC
*
14331281 GTGCTGTCGATCCCACTGC
1 GTGCTGCCGATCCCACTGC
14331300 CATAACCCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.39, G:0.26, T:0.24
Consensus pattern (19 bp):
GTGCTGCCGATCCCACTGC
Found at i:14331882 original size:26 final size:26
Alignment explanation
Indices: 14331844--14331896 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14331834 CCAGTCCGAT
14331844 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14331870 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
14331896 C
1 C
14331897 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14331998 original size:184 final size:184
Alignment explanation
Indices: 14331685--14332053 Score: 499
Period size: 184 Copynumber: 2.0 Consensus size: 184
14331675 TCTGGCTGGG
* * **
14331685 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCTCAAAACGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGAGCGGGCACTCAG
* ** * * *
14331750 CTGGCTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTCTCGATCC
66 CTGGCTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTCTCGATCC
* * * *
14331815 TGCTGCCGCAACCCTTGGTCC-AGTCCGATCTTAGACTGGGAATGAACTTCGTAT
131 TGCTACAGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
14331869 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGAGCGGGCACTTAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGAGCGGGCACTCAG
* * * *
14331934 -TCGGCTAGAGAGGTAGAATGCGCTAGCCATGGATCGACCCGATCCCCCCTACATGCTGTCGATC
66 CT-GGCTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTCTCGATC
* *
14331998 CTGGTACAGCAACCCTCGGTCCGATCCGATCTTAGTCTGGGAATGAACTCCGTAT
130 CTGCTACAGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
14332053 G
1 G
14332054 AACAAGTCAG
Statistics
Matches: 160, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 1 0.01
184 158 0.99
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGAGCGGGCACTCAG
CTGGCTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTCTCGATCC
TGCTACAGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14332374 original size:26 final size:26
Alignment explanation
Indices: 14332345--14332397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14332335 CTGGTCCGAT
*
14332345 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14332371 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14332397 C
1 C
14332398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14332841 original size:355 final size:355
Alignment explanation
Indices: 14332163--14332855 Score: 937
Period size: 355 Copynumber: 2.0 Consensus size: 355
14332153 GGTCCCGCTA
*
14332163 CCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC
1 CCACAACCATCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC
* *
14332228 GAAACGGGCGTGCGGGCACTCAATCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGG
66 GAAACGAGCGTGCGGGCACTCAATCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGA
* * * * *
14332293 TCCCCGCTGCATGCTGTCGATCCTGCTGCCCGTAACCTCGATCTGGTCCGATCTTAGACTGGGAA
131 TCCCCCCTACATGCTGTCGATCCTGCTGCCCGCAACCTCGATCCGATCCGATCTTAGACTGGGAA
* * *
14332358 TTAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCAT
196 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCAT
* * * * * *
14332423 GCGGGCGCTCAGTCGACCGGAGAGGCATAATGCGTAAGCCGAGGATTAGCCCGATCACCCTCTGC
261 ACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCACCCTCTGC
14332488 ATGCTATCGATCCCGTTGCCGGTCTTACAG
326 ATGCTATCGATCCCGTTGCCGGTCTTACAG
* * *
14332518 CCACAACCATCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCATCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC
* * * * * * * *
14332583 GAAATGAGCGTGCGGGCGCTCAGTCTGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGA
66 GAAACGAGCGTGCGGGCACTCAATCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGA
* * * *
14332648 TCCCCCCATACGTGCTG-CTGGTCCTGCTG-CCGCAACCCTCGATCCGATCTGATCTTAGTCTGG
131 TCCCCCC-TACATGCTGTC-GATCCTGCTGCCCGCAA-CCTCGATCCGATCCGATCTTAGACTGG
* * * *
14332711 GAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCTACGAAGC-G
193 GAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAA
* * * *
14332774 GACGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATC-CCC
257 G-CATACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCACCC
*
14332838 TCTGCGTGCTATCGATCC
321 TCTGCATGCTATCGATCC
14332856 TACTGCCGTA
Statistics
Matches: 292, Mismatches: 41, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
355 149 0.51
356 142 0.49
357 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (355 bp):
CCACAACCATCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCACTCAATCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGA
TCCCCCCTACATGCTGTCGATCCTGCTGCCCGCAACCTCGATCCGATCCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCAT
ACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCACCCTCTGC
ATGCTATCGATCCCGTTGCCGGTCTTACAG
Done.