Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 83 of 138
Found at i:14332971 original size:184 final size:185
Alignment explanation
Indices: 14332542--14333010 Score: 597
Period size: 184 Copynumber: 2.5 Consensus size: 185
14332532 CCGGTTGGGG
*
14332542 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * *
14332607 CTG-CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCATACGTGCTGCTGGTC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCATACGTGCTGCTGATC
* * * *
14332671 CTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGTCTGGGAATGAACTCCGTATG
130 CTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATA
* * * *
14332727 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCTACGAAGCG-GACGTACGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAG
* * * *
14332791 CCGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCTC-TGCGTGCT-ATCGAT
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCATACGTGCTGCT-GAT
* * * *
14332854 CCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATA
129 CCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATA
* * * *
14332911 CTTAGAC-TGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
14332975 CCGACCAGAGGGGCAGGATACGCAAGCTTGGGATCG
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCG
14333011 AACGGGTGGT
Statistics
Matches: 244, Mismatches: 35, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
183 2 0.01
184 143 0.59
185 99 0.41
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (185 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCATACGTGCTGCTGATCC
TACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATA
Found at i:14334055 original size:26 final size:26
Alignment explanation
Indices: 14334019--14334071 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14334009 CTAGTCCAAT
14334019 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
14334045 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14334071 C
1 C
14334072 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14334937 original size:158 final size:157
Alignment explanation
Indices: 14334433--14334999 Score: 618
Period size: 158 Copynumber: 3.6 Consensus size: 157
14334423 GGCTTACACA
*
14334433 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGA
* * * * * * * * * *
14334498 GAGGTAGAATGCGTAAGTCAGTGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCCTACTACTAC
66 AAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
* *
14334563 GACCCTCGGTCCGGTCTGATCTTAGAC
131 AACCCTCGGTCCGATCTGATCTTAGAC
* * * * * * ** *
14334590 TCGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCACTGAGTTGGCCAG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC-G
* * * ** * * * *
14334655 G-AAGGCATAATGCGCAAGTCGGGGATCGACCTGGTCCCTCTTTGTGTGCTGTCGGTCCCGCAGC
64 GAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGTCGATCCTGCTGC
* * **
14334719 CACAGCCCTCGGTCTGA-CTAGGGCTTAGAC
128 CACAACCCTCGGTCCGATCT-GATCTTAGAC
* * *
14334749 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGACCGG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGG
14334814 AAAGGCAGAATGCGCAAG-CTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCC
65 AAAGGCAGAATGCGCAAGTC-GGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCC
* *
14334878 ACAACCCTTGGTCCAATCTGATCTTAGAC
129 ACAACCCTCGGTCCGATCTGATCTTAGAC
* * * *
14334907 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGGCGCTCAGCCGACCAG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGG
* * * *
14334972 AGAGGCAGGATGAGCAAGCCGGGGATCG
65 AAAGGCAGAATGCGCAAGTCGGGGATCG
14335000 AATGGATGGT
Statistics
Matches: 332, Mismatches: 68, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 205 0.62
159 124 0.37
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGA
AAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCCGATCTGATCTTAGAC
Found at i:14341877 original size:194 final size:195
Alignment explanation
Indices: 14341531--14341893 Score: 498
Period size: 194 Copynumber: 1.9 Consensus size: 195
14341521 TGCTTAGACA
* *
14341531 TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCAGTCAGTCGGA
1 TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGACACTCAGCCAGTCGGA
* * * * *
14341596 GAGATAGAATGCGCAAGTTAGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTGCTACTAC
66 GAGACAGAATGCGCAAGCTAGGGACCGGCCCGATCCCCCCTACATGCTATCGATCCTGCTACCAC
*
14341661 AACCCTCGATTCGGTTTGATCTTAGATTGGGAATGAACTCCCTATTCCTAAGCCTCAGTCTGGCG
131 AACCCTCGATTCGGTCTGATCTTAGATTGGGAATGAACTCCCTATTCCTAAGCCTCAGTCTGGCG
* * * * * *
14341726 TGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAGCCGGTC-GA
1 TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGACACTCAGCCAGTCGGA
* * * * *
14341790 GAGGCAGAATGTGCAAGCT-GCGGACCGGCCC-AGTCCCCCCTACGTGCTGTCGATCCTGCTGCC
66 GAGACAGAATGCGCAAGCTAG-GGACCGGCCCGA-TCCCCCCTACATGCTATCGATCCTGCTACC
* *
14341853 ACAACCCTCGGTTTGGTCTGATCTTAGATTGGGAATGAACT
129 ACAACCCTCGATTCGGTCTGATCTTAGATTGGGAATGAACT
14341894 TCGTATGCCT
Statistics
Matches: 145, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
193 2 0.01
194 89 0.61
195 54 0.37
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (195 bp):
TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGACACTCAGCCAGTCGGA
GAGACAGAATGCGCAAGCTAGGGACCGGCCCGATCCCCCCTACATGCTATCGATCCTGCTACCAC
AACCCTCGATTCGGTCTGATCTTAGATTGGGAATGAACTCCCTATTCCTAAGCCTCAGTCTGGCG
Found at i:14342501 original size:328 final size:314
Alignment explanation
Indices: 14341847--14343021 Score: 912
Period size: 328 Copynumber: 3.7 Consensus size: 314
14341837 TGTCGATCCT
* ** * *
14341847 GCTGCCACAACCCTCGGTTTGGTCT-GATCTTAGA-TTGGGAATGAACT-TCGTATGCCTAAGTC
1 GCTGCCACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCC
** * * * * * ** *
14341909 AACCCACAAAATGAACGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAG-CCGAGGAT
63 AACCCATGAAACGAGCGTGCGGCCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGTCAG-GGAT
* * * * * * * * * * *
14341973 CGGTCC-GAT-CCATCATTGGGTGCTGTTGATCCTGCTA-TCGCAACCCTTGGTCTGGTCTGATC
127 CGG-CCTGGTCCCAGC-TTGCGTACTATCGATCCTGC-AGCCACAACCCTCGGTC-GATCTGAGC
* * *
14342035 TTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAGGCGT-TCGGGCATTGAGC
188 TTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAAGA-GCGTGT-GGGCACTGAGC
* * * * *
14342099 CGGTCGGAGAGGCATAACGCACAAACCGGGGATCAACCCGATCCCCCTCTGCATGCTATCGGTGC
250 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATC-ACCCGATCCCCCTCTGCGTGCTATCGGT-C
14342164 -C
313 TC
* *
14342165 GTTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGTATGGCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * **
14342230 CCATGAAACGAGTGTGTGGGTGCTCAGCCGACCGGAGAGGCAGAATACGTAAGTCAGGGATCGGC
66 CCATGAAACGAGCGTGCGGCCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGTCAGGGATCGGC
* * * * **
14342295 TTGGTCCCCCCTGCGTGCTGCCATTCCTACTGCTGATCCTGCAGCCGTAACCCTCGGTCTGA-CT
131 CTGGT---CCCAGC-T--TG-C-GTACTA-T-C-GATCCTGCAGCCACAACCCTCGGTC-GATCT
* *
14342359 GGGGCTTAGACAT-GGAATGAACTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCACT
184 -GAGCTTAGAC-TGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAA-GAGCGTGTGGGCACT
* * * * * * * * *
14342423 CAACCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTACCCCGACCCCCCTCTGCGCGCTGTCG
246 GAGCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCA-CCCGATCCCCCTCTGCGTGCTATCG
14342488 GTCTC
310 GTCTC
* *
14342493 GCTGCCACAACCCTCGATCCT-GCTGGTGCTTAGACATGGAATGAACT-TGCTATGCCTAAGCCA
1 GCTGCCACAACCCTCGGT-CTGGCTGGGGCTTAGACATGGAATGAACTCTG-TATGCCTAAGCCA
* * * * * *
14342556 ACCCACGAAATGGGCGTGCGGCCGCTCAGCCGACTGGAGAGGCAGAATGCGTAAGTCGGGGATCG
64 ACCCATGAAACGAGCGTGCGGCCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGTCAGGGATCG
** * *
14342621 GCCTGGTCCCAGCTTGCGTACTATCGATCCTGTTGCCACAACCTTCGGTCGATCTGATCTTAGAC
129 GCCTGGTCCCAGCTTGCGTACTATCGATCCTGCAGCCACAACCCTCGGTCGATCTGAGCTTAGAC
* ** *
14342686 TGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCAGGCGCTGAGCCGGCCGG
194 TGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAA-GAGCGTGTGGGCACTGAGCCGGCCGG
* * * * *
14342751 AGAGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCTTCAGCGTGCTATCGATCTT
257 AGAGGCATAATGCGCAAGCCGGGGATC-ACCCGATCCCCCTCTGCGTGCTATCGGTCTC
* *** **
14342810 GCTGCCACAACCCTCGGT-TCGGTTGGGGCTTAGTTGTGGAATGAACTCCATATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * * * * * * * * * *
14342874 CCGATGAAACG-GCGTGCGGGCACTGAACC-AGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCG
65 CCCATGAAACGAGCGTGCGGCCGCTCAGCCGA-CCGGAGAGGCAGAATACGTAAGTCAGGGATCG
* * * * * * * * * *
14342937 GAAC-GGTCCC-CCCTGTGTTCTGTCGATCCTACTGCTACAACCCTCGGTCTGAT-TCGATCTTA
129 G-CCTGGTCCCAGCTTGCGTACTATCGATCCTGCAGCCACAACCCTCGGTC-GATCT-GAGCTTA
14342999 GACTGGGAATGAACTCCGTATGC
191 GACTGGGAATGAACT-CGTATGC
14343022 TTAGACTGGG
Statistics
Matches: 693, Mismatches: 128, Indels: 74
0.77 0.14 0.08
Matches are distributed among these distances:
315 34 0.05
316 101 0.15
317 175 0.25
318 104 0.15
319 5 0.01
320 4 0.01
321 1 0.00
322 6 0.01
324 3 0.00
325 5 0.01
326 3 0.00
327 5 0.01
328 204 0.29
329 42 0.06
330 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (314 bp):
GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGCCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGTCAGGGATCGGC
CTGGTCCCAGCTTGCGTACTATCGATCCTGCAGCCACAACCCTCGGTCGATCTGAGCTTAGACTG
GGAATGAACTCGTATGCCTAAGTCAACCCACGAAAGAGCGTGTGGGCACTGAGCCGGCCGGAGAG
GCATAATGCGCAAGCCGGGGATCACCCGATCCCCCTCTGCGTGCTATCGGTCTC
Found at i:14342816 original size:158 final size:160
Alignment explanation
Indices: 14341727--14343021 Score: 888
Period size: 159 Copynumber: 8.1 Consensus size: 160
14341717 AGTCTGGCGT
* * * * * *
14341727 GGAATGAACTCCCTATTCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAGCCGGTC-GAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * * * *
14341791 AGGCAGAATGTGCAAGCTGCGGACCGGCCC-AGTCCCC-CCTACGTGCTGTCGATCCTGCTGCCA
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCTTCTGCGTGCTATCGATCCTGCTGCCA
* * *
14341854 CAACCCTCGGTTTGGTCT-GATCTTAGATTG
130 CAACCCTCGGTCTGATCTGGATCTTAGACTG
* * * * * * *
14341884 GGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCGCTCAACCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * ** * * * * * ** *
14341949 AGGCAGAATGCACAAGCCGAGGATCGGTCCGATCCATCAT-TGGGTGCTGTTGATCCTGCTATCG
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC-CCTTCTGCGTGCTATCGATCCTGCTGCCA
* * *
14342013 CAACCCTTGGTCTGGTCT-GATCTTAGATTG
130 CAACCCTCGGTCTGATCTGGATCTTAGACTG
* * * ** * *
14342043 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC-AGGCGTTCGGGCATTGAGCCGGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCGGA
* * * * * * * * *
14342107 GAGGCATAACGCACAAACCGGGGATCAACCCGATCCCCCTCTGCATGCTATCGGTGCC-GTTGCC
65 GAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTTCTGCGTGCTATCGAT-CCTGCTGCC
* **
14342171 ACAACCCTCGGTCTG-GCTGGGGCTTAGACAT-
129 ACAACCCTCGGTCTGATCTGGATCTTAGAC-TG
* * * * * * *
14342202 GGAATGAACTCTGTATGGCTAAGCCAACCCATGAAACGAGTGTGTGGGTGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * ** * * *
14342267 AGGCAGAATACGTAAGTCAGGGATCGGCTTGGTCCCCCCTGCGTGCTGCCATTCCTACTGCTGAT
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGAT--CCCCT---T-CTG-C-GTGCTA-T-C-GAT
* ** **
14342332 CCTGCAGCCGTAACCCTCGGTCTGA-CTGGGGCTTAGACAT-
120 CCTGCTGCCACAACCCTCGGTCTGATCTGGATCTTAGAC-TG
* * * * *
14342372 GGAATGAACT-CGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCACTCAACCGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * * *
14342436 AGGCAGAATGCGCAAGCCAGGGAT-TACCCCGACCCCCCTCTGCGCGCTGTCGGT-CTCGCTGCC
66 AGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCTTCTGCGTGCTATCGATCCT-GCTGCC
*
14342499 ACAACCCTCGATCCTG--CTGG-TGCTTAGACAT-
129 ACAACCCTCGGT-CTGATCTGGAT-CTTAGAC-TG
* * * * * *
14342530 GGAATGAACT-TGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGCCGCTCAGCCGACTGGA
1 GGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGA
* * * * * * *
14342594 GAGGCAGAATGCGTAAGTCGGGGATCGGCCTGGTCCCAGC-T-TGCGTACTATCGATCCTGTTGC
65 GAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC--CTTCTGCGTGCTATCGATCCTGCTGC
*
14342657 CACAACCTTCGGTC-GATCT-GATCTTAGACTG
128 CACAACCCTCGGTCTGATCTGGATCTTAGACTG
* * * *
14342688 GGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCAGGCGCTGAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * *
14342753 AGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCTTCAGCGTGCTATCGATCTTGCTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTTCTGCGTGCTATCGATCCTGCTGCCAC
* ** *
14342818 AACCCTCGGT-TCGGT-TGGGGCTTAG-TTG
131 AACCCTCGGTCT-GATCTGGATCTTAGACTG
* * * * * * * *
14342846 TGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACG-GCGTGCGGGCACTGAACCAGTCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGA
* * * * * * * * *
14342910 GAGGTAGAATGCGCAAGCCGGGGATCGGA-ACGGTCCCC-CCTGTGTTCTGTCGATCCTACTGCT
65 GAGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCCCCTTCTGCGTGCTATCGATCCTGCTGCC
*
14342973 ACAACCCTCGGTCTGAT-TCGATCTTAGACTG
129 ACAACCCTCGGTCTGATCTGGATCTTAGACTG
14343004 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14343022 TTAGACTGGG
Statistics
Matches: 886, Mismatches: 206, Indels: 92
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 108 0.12
158 252 0.28
159 377 0.43
160 8 0.01
161 7 0.01
162 1 0.00
163 3 0.00
164 2 0.00
165 3 0.00
166 1 0.00
167 8 0.01
168 1 0.00
169 70 0.08
170 44 0.05
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (160 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTTCTGCGTGCTATCGATCCTGCTGCCAC
AACCCTCGGTCTGATCTGGATCTTAGACTG
Found at i:14343014 original size:157 final size:155
Alignment explanation
Indices: 14342329--14343021 Score: 485
Period size: 158 Copynumber: 4.4 Consensus size: 155
14342319 TCCTACTGCT
* ** * * **
14342329 GATCCTGCAGCCGTAACCCTCGGTCTGACTGGGGCTTAGACAT-GGAATGAACT-CGTATGCCTA
1 GATCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
* * * * * * * *
14342392 AGCCAACCCACGAAATGAGCGTGTGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCAGG
65 AGCCAA-CCACGAAACG-GCGTGCGGGCGCTGAGCC-GACGGAGAGGCAGAATGCGCAAGCCGGG
**** ** ** *
14342457 GATTACCCCGACCCCCCTCTGCGCGCTGTC
127 GATCGGACCGGTCCCCC-CTGCGTACTATC
* * * * *
14342487 GGT-CTCGCTGCCACAACCCTCGATCCTG-CT-GGTGCTTAGACAT-GGAATGAACT-TGCTATG
1 GATCCT-GCTGCCACAACCCTCGGT-CTGATTCGAT-CTTAGAC-TGGGAATGAACTCCG-TATG
* * * * *
14342547 CCTAAGCCAACCCACGAAATGGGCGTGCGGCCGCTCAGCCGACTGGAGAGGCAGAATGCGTAAGT
61 CCTAAGCCAA-CCACGAAA-CGGCGTGCGGGCGCTGAGCCGAC-GGAGAGGCAGAATGCGCAAGC
* *
14342612 CGGGGATCGG-CCTGGTCCCAGCTTGCGTACTATC
123 CGGGGATCGGACC-GGTCCC-CCCTGCGTACTATC
* *
14342646 GATCCTGTTGCCACAACCTTCGGTC-GA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
1 GATCCTGCTGCCACAACCCTCGGTCTGATTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
14342709 AGTCAACACACGAAACGAGCGTGCAGGCGCTGAGCCGGCCGGAGAGGCATAATGTGCAAGCCGGG
65 AGCCAAC-CACGAAACG-GCGTGCGGGCGCTGAGCC-GACGGAGAGGCAGAATGCGCAAGCCGGG
* * * *
14342774 GATC-GACCCGATCCCCTTCAGCGTGCTATC
127 GATCGGA-CCGGTCCCC-CCTGCGTACTATC
* * * ** * *
14342804 GATCTTGCTGCCACAACCCTCGGT-TCGGTTGGGGCTTAG-TTGTGGAATGAACTCCATATGCCT
1 GATCCTGCTGCCACAACCCTCGGTCT-GATTCGATCTTAGACTG-GGAATGAACTCCGTATGCCT
* * * * *
14342867 AAGCCAACCGATGAAACGGCGTGCGGGCACTGAACCAGTCGGAGAGGTAGAATGCGCAAGCCGGG
64 AAGCCAACC-ACGAAACGGCGTGCGGGCGCTGAGCC-GACGGAGAGGCAGAATGCGCAAGCCGGG
* * * *
14342932 GATCGGAACGGTCCCCCCTGTGTTCTGTC
127 GATCGGACCGGTCCCCCCTGCGTACTATC
* *
14342961 GATCCTACTGCTACAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGC
14343022 TTAGACTGGG
Statistics
Matches: 423, Mismatches: 84, Indels: 57
0.75 0.15 0.10
Matches are distributed among these distances:
157 65 0.15
158 211 0.50
159 142 0.34
160 5 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (155 bp):
GATCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCACGAAACGGCGTGCGGGCGCTGAGCCGACGGAGAGGCAGAATGCGCAAGCCGGGGATC
GGACCGGTCCCCCCTGCGTACTATC
Found at i:14343031 original size:26 final size:26
Alignment explanation
Indices: 14342995--14343047 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14342985 CTGATTCGAT
14342995 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14343021 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14343047 C
1 C
14343048 CTATGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14343182 original size:486 final size:486
Alignment explanation
Indices: 14342644--14343561 Score: 1139
Period size: 486 Copynumber: 1.9 Consensus size: 486
14342634 TTGCGTACTA
* * * *
14342644 TCGATCCTGTTGCCACAACCTTCGGTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
1 TCGATCCTGCTGCCACAACCTTCGGTCCATCCGATCCTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * ** *
14342709 AGTCAACACACGAAACGAGCGTGCAGGCGCTGAGCCGGCCGGAGAGGCATAATGTGCAAGCCGGG
66 AGTCAACACACGAAACGAGCATGCAGGCACTGAGCCGGCCGAAAAAGCATAATGCACAAGCCGAG
* * * * * *
14342774 GATCGACCCGATCCCCTTC-AGCGTGCTATCGATCTTGCTGCCACAACCCTCGGTTCGGTTGGGG
131 GATCGACCCGATCCCCGTCTA-CGTGCTATCGATCCTACTACCACAACCCTCGGTCCGATTGGGG
*** * * *
14342838 CTTAGTTGTGGAATGAACTC-CATATGCCTAAGCCAACCGATGAAAC-GGCGTGCGGGCACTGAA
195 CTTAGACATGGAATGAACTCGC-TATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGCACTCAA
* * * * ** * * *
14342901 CC-AGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGAACGGTCCCCCCTGTGTTCTGTCGATC
259 CCGACT-GGAGAGGCAGAATGCACAAGCCAGGGATCGGAACAATCCCCCCTGCGTGCTATCGATC
* * * ** *
14342965 CTACTGCTACAACCCTCGGTCTGATTC-GATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGAC
323 CTACTGCCACAACCCTCGATCT-AGTCTGATCTTAGACTCAGAATGAACTTCAG-ATGCTTAGAC
* *
14343028 TGGGGATGAACTCCGTATGCCTATGTCAAACCATGAAACGAGTGTGCGGGTCAGTCGGCCGAAGA
386 TGGGGATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCGGGTCAGTCGGCCGAAGA
14343093 GGTCGATCGGAGAGGTAAAATGCACAGAATACACTG
451 GGTCGATCGGAGAGGTAAAATGCACAGAATACACTG
*
14343129 TCGATCCTGCTGCCACAACCCTT-GGTCCAGTCCGATCCTAGACTGGGAATGAACTTCGTATGCC
1 TCGATCCTGCTGCCACAA-CCTTCGGTCCA-TCCGATCCTAGACTGGGAATGAACTCCGTATGCC
* * * *
14343193 TAAGTCAACCCATGAAATGAGCATGCAGGCATTGAGCCGGCCGAAAAAGCATAATGCACAAGCCG
64 TAAGTCAACACACGAAACGAGCATGCAGGCACTGAGCCGGCCGAAAAAGCATAATGCACAAGCCG
* * * * *
14343258 AGGATCGGCTCGATCCCCGTCTATGTGCTGTCGGTCCTACTACCACAACCCTCGGTCCGATTGGG
129 AGGATCGACCCGATCCCCGTCTACGTGCTATCGATCCTACTACCACAACCCTCGGTCCGATTGGG
* *
14343323 GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGCGCTCAT
194 GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGCACTCAA
* ** *
14343388 CCGACTGGAGAGGCAGAATGCACAAGCTAGGGATCGGCTCAATCCTCCCTGCGTGCTATCGATCC
259 CCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCGGAACAATCCCCCCTGCGTGCTATCGATCC
* * * *
14343453 TGCTGCCATAACCCTCGATCTAGTCTGATCTTAGATTCAGAATGACCTTCAGATGCTTAGACTGG
324 TACTGCCACAACCCTCGATCTAGTCTGATCTTAGACTCAGAATGAACTTCAGATGCTTAGACTGG
* * * *
14343518 GGATGAACTCTGTATGCCTAAGTTAACCCATGATACGAGCGTGC
389 GGATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGC
14343562 AGACGCTCAG
Statistics
Matches: 360, Mismatches: 65, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
485 22 0.06
486 184 0.51
487 149 0.41
488 5 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (486 bp):
TCGATCCTGCTGCCACAACCTTCGGTCCATCCGATCCTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACACACGAAACGAGCATGCAGGCACTGAGCCGGCCGAAAAAGCATAATGCACAAGCCGAG
GATCGACCCGATCCCCGTCTACGTGCTATCGATCCTACTACCACAACCCTCGGTCCGATTGGGGC
TTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGCACTCAACC
GACTGGAGAGGCAGAATGCACAAGCCAGGGATCGGAACAATCCCCCCTGCGTGCTATCGATCCTA
CTGCCACAACCCTCGATCTAGTCTGATCTTAGACTCAGAATGAACTTCAGATGCTTAGACTGGGG
ATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCGGGTCAGTCGGCCGAAGAGGTCG
ATCGGAGAGGTAAAATGCACAGAATACACTG
Found at i:14344235 original size:26 final size:26
Alignment explanation
Indices: 14344197--14344249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14344187 GGCTCAAACT
14344197 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14344223 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14344249 C
1 C
14344250 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14344564 original size:158 final size:157
Alignment explanation
Indices: 14344222--14344564 Score: 363
Period size: 157 Copynumber: 2.2 Consensus size: 157
14344212 AACTCCGTAT
*
14344222 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * ** * *
14344286 GTCGATCGGAGAGGTAGAATGCATGTCGAGGATTGGCACGATCCCCCTCTACGTGCTGTCGGTCC
65 GCCGATCGGAAAGGCAGAATGCAAGTCGAGGATCAGCACGATCCCCCTCTACGTGCTGCCGATCC
* * *
14344351 TACTGCCATAACCCCCGGTCTGGTTGGG
130 TACTACCACAACCCCCGGTCTGGTTGGA
* * * * *
14344379 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * *
14344444 CC-AGCTGGAAAGGCAGAATGCGTAAGTCGGGGATCAGC-CTGGTCCCCC-CTGCGTGCTGCCGA
66 CCGATC-GGAAAGGCAGAATGC--AAGTCGAGGATCAGCAC-GATCCCCCTCTACGTGCTGCCGA
* * * *
14344506 TCCTACTACCGCAACCCTCGGTTTGGTTTGA
127 TCCTACTACCACAACCCCCGGTCTGGTTGGA
*
14344537 TCTTAGAC-TAGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTTCGTATGC
14344565 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 72 0.47
158 60 0.39
159 18 0.12
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGATCGGAAAGGCAGAATGCAAGTCGAGGATCAGCACGATCCCCCTCTACGTGCTGCCGATCCT
ACTACCACAACCCCCGGTCTGGTTGGA
Found at i:14344579 original size:26 final size:26
Alignment explanation
Indices: 14344538--14344590 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14344528 TTGGTTTGAT
*
14344538 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* *
14344564 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
14344590 C
1 C
14344591 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:14345006 original size:159 final size:158
Alignment explanation
Indices: 14344735--14345230 Score: 539
Period size: 160 Copynumber: 3.1 Consensus size: 158
14344725 CCGATCTGAT
* * * **
14344735 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14344800 CGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCATACGTGCTGTCGATCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCC-TGCGTGCTGTCGATCC
*
14344865 TGCTACCGCAACCCTCGATCCCGTTTGAC
130 TGCTACCGCAACCCTCGATCCAGTTTGAC
* * *
14344894 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14344959 CTGACTGGAGAGGTATAATGCGCAAGCCGGGGATCAACCTGATCCCCCTCTGCGTGCTGGCGGTC
66 C-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
* * * * **
14345024 CCGCTACCACAACCCTCGATCCAGCTGGGG
129 CTGCTACCGCAACCCTCGATCCAGTTTGAC
* *** * *
14345054 ATTAGACAT-GGAATGAACTCCCAATGCATAAGCCAACCCATGAAACG-GTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
14345117 CCGGCCGGAGAGGCAGAATGCGCAAGACGGGGATTGGCCCGGTCCCCCCTGCATGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
14345182 TGCTACTGCAACCCTC-AGTCCGGTGTGAT
130 TGCTACCGCAACCCTCGA-TCCAGTTTGAC
*
14345211 CTTAGATTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
14345231 CATATGCATA
Statistics
Matches: 272, Mismatches: 60, Indels: 12
0.79 0.17 0.03
Matches are distributed among these distances:
156 2 0.01
157 48 0.18
158 36 0.13
159 73 0.27
160 111 0.41
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGATCCAGTTTGAC
Found at i:14345252 original size:26 final size:26
Alignment explanation
Indices: 14345213--14345263 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14345203 GGTGTGATCT
*
14345213 TAGATTGGGAATGAACTCCATATGCA
1 TAGACTGGGAATGAACTCCATATGCA
* *
14345239 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
14345264 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:14345972 original size:26 final size:26
Alignment explanation
Indices: 14345934--14345986 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14345924 GGCTCAAACT
* *
14345934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
14345960 CTTAGACAT-GGAATGAAATCCATATG
1 CTTAGAC-TGGGAATGAAATCCATATG
14345986 C
1 C
14345987 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:14346670 original size:26 final size:26
Alignment explanation
Indices: 14346641--14346693 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14346631 CCGGTCCGAT
14346641 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14346667 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14346693 C
1 C
14346694 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14346765 original size:365 final size:353
Alignment explanation
Indices: 14346095--14346778 Score: 786
Period size: 365 Copynumber: 1.9 Consensus size: 353
14346085 AATCCCATTG
* * * *
14346095 CCACAACCCTCGGTCTGCCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCTGCCTGGGGCTTACACATGGAATAAACTCCATATGCCTAAGCCAACCCAG
* * * ** * * * *
14346160 GAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGTGCAAGTCGGGGATCAGCCCGG
66 GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATACGCAAGCCGAGGATCAGACCGA
* * *
14346225 TCCCCCTTGCGTCTGCCGATCCTGCAGCCGCAACCCTTGGTCTGGTTCGATCTTAGACTGGGAAT
131 TCCCCCTTGCGTCTGCCGATCCTGCAGCCGCAAACCTTGGTCCGGTCCGATCTTAGACTGGGAAT
* * *
14346290 GAACCCCGTATGCTTAGATCGGGGATGAACTCCGTATGCCTAACTCAACCCATGGAACGAGCGTA
196 GAACCCCGTATGCTTAGATCGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTA
* * * * * * * *
14346355 CGGGCGATCAGTCGATCGGAGAGGCATAATGTGCAAGCTGGGGATC-AGCCTGGTCCCCCTTGGG
261 CGGACGATCAGTCGACCGAAGAGGCAGAACGTGCAAACCGGGGATCGA-CCCGGTCCCCCTTGGG
14346419 TGCTACCGATCCTGCTGCCGGTCTTGCTA
325 TGCTACCGATCCTGCTGCCGGTCTTGCTA
* *
14346448 CCACAACCCTCGGTGC-GGCTGGGGCTTACACATGGAATAAACTCCATATGCCTAAGCCAACCTA
1 CCACAACCCTCGGT-CTGCCTGGGGCTTACACATGGAATAAACTCCATATGCCTAAGCCAACCCA
* * * * * *
14346512 GGAAATGAGCGTGCGGGTGCTTAGCCGACCAGTG-GGCAGAATACGTAAGCCGAGGATCGGACCG
65 GGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATACGCAAGCCGAGGATCAGACCG
**
14346576 ATCCCCCTTGCGTGCTGTTGATCTTGCTGCTAGTCCTACTGCCACAACCTTCGGTCCGGTCCGAT
130 ATCCCCCTTGCGT-CTGCCGATC---CTGC-AG--C--C-G-CA-AACCTT-GGTCCGGTCCGAT
* *
14346641 CTTAGACTGGGAATGAACTCCGTATGCTTAGA-CATGGAATGAACTCCGTATGCCTAAGC-CAAC
182 CTTAGACTGGGAATGAACCCCGTATGCTTAGATC-GGGAATGAACTCCGTATGCCTAA-CTCAAC
* * *
14346704 CCACGAAACGAGCGTACGGACGCTCAG-CTGGCCGAAGAGGTAGAACGTGCAAACCGGGGATCGA
245 CCACGAAACGAGCGTACGGACGATCAGTC-GACCGAAGAGGCAGAACGTGCAAACCGGGGATCGA
14346768 CCCGGTCCCCC
309 CCCGGTCCCCC
14346779 CTGCCTGCTG
Statistics
Matches: 271, Mismatches: 42, Indels: 24
0.80 0.12 0.07
Matches are distributed among these distances:
352 34 0.13
353 91 0.34
354 1 0.00
356 4 0.01
357 2 0.01
359 1 0.00
361 1 0.00
362 1 0.00
363 2 0.01
364 7 0.03
365 125 0.46
366 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (353 bp):
CCACAACCCTCGGTCTGCCTGGGGCTTACACATGGAATAAACTCCATATGCCTAAGCCAACCCAG
GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATACGCAAGCCGAGGATCAGACCGA
TCCCCCTTGCGTCTGCCGATCCTGCAGCCGCAAACCTTGGTCCGGTCCGATCTTAGACTGGGAAT
GAACCCCGTATGCTTAGATCGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTA
CGGACGATCAGTCGACCGAAGAGGCAGAACGTGCAAACCGGGGATCGACCCGGTCCCCCTTGGGT
GCTACCGATCCTGCTGCCGGTCTTGCTA
Found at i:14346957 original size:158 final size:157
Alignment explanation
Indices: 14346667--14347029 Score: 394
Period size: 158 Copynumber: 2.3 Consensus size: 157
14346657 ACTCCGTATG
*
14346667 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGC
1 CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGC
* * *
14346732 TGGCCGAAGAGGTAGAACGTGCAAACCGGGGATCGACCCGGTCCCCCCTGCCTGCTGTCGATTCT
66 TGGCCGAAAAGGCAGAAC-TGCAAACCGGGGATCGACCCGGTCCCCCCTGCCTGCTGTCGATCCT
* *
14346797 GCTGCTGCAACGCTCGGTCTGGTCTGAT
130 GCTGCTACAACCCTCGGTCTGGTCTGAT
** * * * ** *
14346825 CTTAGAC-TAGGAATGAACTCCGCATGCCTAAGTTAACTCACGGAACGAGCGTTCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAG
* * * * * *
14346889 C-GGCCGAAAAGGCATAA-TGCACAAGTCGGTGATCGACCTGGTCCCCCTCTGCGTGCTGTCGGT
65 CTGGCCGAAAAGGCAGAACTGCA-AA-CCGGGGATCGACCCGGTCCCCC-CTGCCTGCTGTCGAT
* * **
14346952 CCTGCTGCTACAACCCTCGATCTAG-CTGGGG
127 CCTGCTGCTACAACCCTCGGTCTGGTCT-GAT
* *
14346983 CTTAGACATGGAATAAACTCC-CTATGCCTAAGCCAACCCATGAAACG
1 CTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAACG
14347030 GGTTTACAGG
Statistics
Matches: 168, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
155 4 0.02
156 2 0.01
157 36 0.21
158 125 0.74
159 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGC
TGGCCGAAAAGGCAGAACTGCAAACCGGGGATCGACCCGGTCCCCCCTGCCTGCTGTCGATCCTG
CTGCTACAACCCTCGGTCTGGTCTGAT
Found at i:14347170 original size:26 final size:26
Alignment explanation
Indices: 14347141--14347193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14347131 CCAGTCCGAT
14347141 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14347167 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14347193 C
1 C
14347194 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14347707 original size:135 final size:135
Alignment explanation
Indices: 14347451--14347738 Score: 384
Period size: 135 Copynumber: 2.1 Consensus size: 135
14347441 CCAGGGACCA
* * * *
14347451 GCCCGGTCCCCCTCTGCATGCTGCCAGTCCCGCTGCCATAACCCTCGGCTCGGCTAGGGCTTAGA
1 GCCCGGTCCCCCTCTGCGTGCTACCAGTCCCGCTGCCACAACCCTCGGCTCAGCTAGGGCTTAGA
** **
14347516 CATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGGACGTGTGGGCGCTCAGTCGATCG
66 CATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGGACGTACGGGCGCTCAACCGATCG
14347581 GAGAG
131 GAGAG
* * * * *
14347586 GCTCGGTCCCCCTCTGCGTGCTACC-GATCCCGTTGCCACAACCCTCAG-TCTAGTTGGGGCTTA
1 GCCCGGTCCCCCTCTGCGTGCTACCAG-TCCCGCTGCCACAACCCTCGGCTC-AGCTAGGGCTTA
* * *
14347649 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGTGCTCAACCGAT
64 GACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGGACGTACGGGCGCTCAACCGAT
14347714 CGGAGAG
129 CGGAGAG
*
14347721 GCCCGGACCCCC-CTGCGT
1 GCCCGGTCCCCCTCTGCGT
14347739 ACTGTCGATC
Statistics
Matches: 133, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
134 9 0.07
135 124 0.93
ACGTcount: A:0.20, C:0.35, G:0.26, T:0.19
Consensus pattern (135 bp):
GCCCGGTCCCCCTCTGCGTGCTACCAGTCCCGCTGCCACAACCCTCGGCTCAGCTAGGGCTTAGA
CATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGGACGTACGGGCGCTCAACCGATCG
GAGAG
Found at i:14348512 original size:26 final size:26
Alignment explanation
Indices: 14348476--14348528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14348466 CTGATTCGAT
*
14348476 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14348502 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14348528 C
1 C
14348529 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14349955 original size:26 final size:26
Alignment explanation
Indices: 14349926--14349975 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14349916 CCGCTTCGAT
14349926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14349952 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14349976 AGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14350227 original size:12 final size:12
Alignment explanation
Indices: 14350207--14350237 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14350197 ATGTTATCGA
*
14350207 TCCTACTGCTAG
1 TCCTGCTGCTAG
14350219 TCCTGCTGCTAG
1 TCCTGCTGCTAG
14350231 TCCTGCT
1 TCCTGCT
14350238 ACCGTAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.35, G:0.19, T:0.35
Consensus pattern (12 bp):
TCCTGCTGCTAG
Found at i:14350767 original size:158 final size:157
Alignment explanation
Indices: 14350298--14350789 Score: 513
Period size: 158 Copynumber: 3.1 Consensus size: 157
14350288 GCGTAGACAT
* *
14350298 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGATG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAG
* *** * ** * * *
14350363 AGGCAGAATGCGTAAGTTAGGGACCAGCCCGTTCCCACCCACCATGCTGTCGATCCTGCTATCGC
66 AGGCAGAATGCGTAAGTCAGGGATTGGCCCGATCCC-CCCTGCGTGCTGTCGATCTTGCTACCGC
* * *
14350428 AACCCTCAATTCAGTCCGATCTTA-ACTG
130 AACCCTCGA-TCCGTCTGATCTTAGACTG
* ** * * **
14350456 GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAGTGAGCGTGCGGGTGCTCAGCCGGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAG
* * * * * * *
14350521 AGGCAGAATGCGTAAGTCGGGGATTGACCCGATCCCCTCTGTGTGCTGTCGGTCTCGCTACCACA
66 AGGCAGAATGCGTAAGTCAGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGCA
* * * * **
14350586 ACTCTTGGTCCGACTAGGGCTTAGACAT-
131 ACCCTCGATCCGTCT-GATCTTAGAC-TG
* * ** *
14350614 GGAATGAACTCCCTATGCCTAAGGCAACCCACAAAACGAGCGTGCGGGCACTCAGTCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAG
* * * *
14350679 AGGCAGAATGCGTAAGCCATGGATTGGCCCGGTCCCCCCTGCGTGCTG-CTGATCTTGCTACCGT
66 AGGCAGAATGCGTAAGTCAGGGATTGGCCCGATCCCCCCTGCGTGCTGTC-GATCTTGCTACCGC
14350743 AACCCTCGATCCGGTCTGATCTTAGACTG
130 AACCCTCGATCC-GTCTGATCTTAGACTG
14350772 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14350790 TTAGACTAGG
Statistics
Matches: 263, Mismatches: 65, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
156 4 0.02
157 30 0.11
158 225 0.86
159 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAG
AGGCAGAATGCGTAAGTCAGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGCA
ACCCTCGATCCGTCTGATCTTAGACTG
Found at i:14350792 original size:26 final size:26
Alignment explanation
Indices: 14350763--14350815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14350753 CCGGTCTGAT
14350763 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
14350789 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14350815 C
1 C
14350816 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14351194 original size:26 final size:26
Alignment explanation
Indices: 14351156--14351208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14351146 CCGATCTGAT
14351156 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14351182 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14351208 C
1 C
14351209 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14351595 original size:159 final size:157
Alignment explanation
Indices: 14351181--14351675 Score: 437
Period size: 159 Copynumber: 3.1 Consensus size: 157
14351171 AACTCCATAT
* * *
14351181 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAA-GGAACGTGCGAGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAATGAAATGG-GCGTGCGAGCGCTCA
* * * *
14351245 ACCAGTCGGAGAGGCAGAATGC-ACAAGTCGAGGATCGACCCGATCCACCCTGCATGCTGTCGAT
65 ACCGGTCGGAGAGGCAGAATGCGA-AAGTCGGGGATCGGCCCGATCC-CCCTGCGTGCTGTCGAT
* * * ** * *
14351309 CCTGCTACCAGAACCCTCAATCCAGTTTGA
128 CCTGATGCCACAACCCTCGGTCCAGCTGGA
* * * * * * * * *
14351339 TCTTAGAC-TGGGAATGAACTCTATATACCAAAGTCAACCGATGAAATGAGCGTTC-ATGCGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCAATGAAATGGGCGTGCGA-GCGCTC
* * * * * *
14351402 AACCGATCGGAGATGCATAATACGAAAGTTGGGGATCGGCCCGATCCCTCTCTGCGTGCTGTCGG
64 AACCGGTCGGAGAGGCAGAATGCGAAAGTCGGGGATCGGCCCGATCCC-C-CTGCGTGCTGTCGA
* *
14351467 TCCTGATGCCACCACCCTCGGTCCAGCTGGG
127 TCCTGATGCCACAACCCTCGGTCCAGCTGGA
* * * * *
14351498 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAATGAAATGGGCGTGCGAGCGCTCAA
* * * ** *
14351563 CCGGCCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCTTGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGAAAGTCGGGGATCGGCCCGAT-CCCCCTGCGTGCTGTCGATCC
* * *
14351628 T-TTGCCGCAACCCTCGGTCCGGTCT-GA
130 TGATGCCACAACCCTCGGTCCAG-CTGGA
*
14351655 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
14351676 TGTATGCTTA
Statistics
Matches: 264, Mismatches: 62, Indels: 23
0.76 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 39 0.15
158 102 0.39
159 118 0.45
160 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAATGAAATGGGCGTGCGAGCGCTCAA
CCGGTCGGAGAGGCAGAATGCGAAAGTCGGGGATCGGCCCGATCCCCCTGCGTGCTGTCGATCCT
GATGCCACAACCCTCGGTCCAGCTGGA
Found at i:14352759 original size:25 final size:25
Alignment explanation
Indices: 14352725--14352772 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14352715 TTTGATCTTA
*
14352725 GACTAGGAATGAACTCTGTATGCTT
1 GACTAGGAATGAACTCCGTATGCTT
*
14352750 GACTGGGAATGAACTCCGTATGC
1 GACTAGGAATGAACTCCGTATGC
14352773 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
GACTAGGAATGAACTCCGTATGCTT
Found at i:14353455 original size:26 final size:26
Alignment explanation
Indices: 14353417--14353469 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14353407 GGCTCAAACT
14353417 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14353443 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
14353469 C
1 C
14353470 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14354777 original size:26 final size:26
Alignment explanation
Indices: 14354737--14354787 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14354727 TGATCCGATC
14354737 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
14354763 TTAGACTAGGG-ATGAACTCCGTATG
1 TTAGACT-GGGAATGAACTCCATATG
14354788 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:14355383 original size:11 final size:11
Alignment explanation
Indices: 14355367--14355410 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
14355357 CGGTTAGGCT
*
14355367 CTCCGACGATG
1 CTCCAACGATG
*
14355378 CTCCGACGATG
1 CTCCAACGATG
14355389 CTCCAACGATG
1 CTCCAACGATG
14355400 CTCCAACGATG
1 CTCCAACGATG
14355411 GCTGAAACTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.23, C:0.36, G:0.23, T:0.18
Consensus pattern (11 bp):
CTCCAACGATG
Found at i:14355458 original size:26 final size:26
Alignment explanation
Indices: 14355420--14355498 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
14355410 GGCTGAAACT
14355420 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
14355446 CTTAGACATGGAATGAACTTCATATG
1 CTTAGACATGGAATGAACTCCGTATG
14355472 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14355498 C
1 C
14355499 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14356370 original size:158 final size:158
Alignment explanation
Indices: 14356122--14356506 Score: 400
Period size: 158 Copynumber: 2.4 Consensus size: 158
14356112 CTACTGCCAT
* * * * * * *
14356122 AACCCTCGGTTCGGTCTAATTTTAGACTGGGAATGAAC-TCTATATGCCTAAGTCAACCTATGAA
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAA
* * * * * *
14356186 ACGAGTGATCGGACACTAAGCCAGTCAAAAAAGTATAATGCGTAAG-CTAGGGATC-GACCCGAT
65 ATGAGAGATCGGACACTAAGCCAGTCAAAAAAGCAGAATGCGCAAGAC-AAGGATCAG-CCCGAT
* * * * * *
14356249 CCCCTTCTGCGTGTTACCGGTCCCGTTGCTGC
128 CCCCCT-TGCGTGCTACCGATCCCGCTACCGC
* * *
14356281 AACCCTTGGTCTGATCCGATCTTAGACTGGGAATG-ACTTCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
* * * * *
14356345 TGAGAGATCGGGCGCTAAGCCAGTCAGAGAGGCAGAATGCGCAAGACAAGGATCAGCCCGATCCC
66 TGAGAGATCGGACACTAAGCCAGTCAAAAAAGCAGAATGCGCAAGACAAGGATCAGCCCGATCCC
*** *
14356410 CCTTGCGTGCTGTTGATCCTGCTACCGC
131 CCTTGCGTGCTACCGATCCCGCTACCGC
* * *
14356438 AACCCTCGGTCCGATCCAATCTTCGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
14356503 TGAG
66 TGAG
14356507 CGTGCGGGTG
Statistics
Matches: 185, Mismatches: 37, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 46 0.25
158 107 0.58
159 32 0.17
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (158 bp):
AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
TGAGAGATCGGACACTAAGCCAGTCAAAAAAGCAGAATGCGCAAGACAAGGATCAGCCCGATCCC
CCTTGCGTGCTACCGATCCCGCTACCGC
Found at i:14356974 original size:330 final size:328
Alignment explanation
Indices: 14355816--14356985 Score: 807
Period size: 330 Copynumber: 3.6 Consensus size: 328
14355806 CTTCATATGC
* * * * * **
14355816 TTAGACTGGGGATGAACACCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCATGTGCTCAG-C
1 TTAGACTGGGAAAGAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTC
* * * ** * * * *
14355880 TGACCGAAGAGGTAGAATGCGTAAGCCGGGGAT-TGACTCGGTCCCCC-CTGCATGCTACCGATC
66 -AACCGAAGAGGCATAATGCACAAGCCGAGGATCAG-CCCGATCCCCCTCTGCATGCTACCGATC
* * * * * * * * * *
14355943 TTGC-AGCTGGTCCTGCTGCTGCAACCCTGGGTACGGTCCTATCTTAGGCTAGGAATGAACTCTG
129 TCGCTA-CCGGTCCTGCTACCGCAACCCTCGGTCCGATTCGATCTTAGACTAGGAATGAACT-TG
** ** * * **
14356007 TATGCCTAAGCTGACCCACGAAATGAGA-ATACGGGTGCTCAA-CCGGTCAGAGAGGTAGAATAT
192 TATGCCTAAGCCAACCCACGAAATGAGAGAT-CGGACGCT-AAGCCAGTCAGAGAGGCAGAATGC
** * * * * * **
14356070 GC-AG-CTGGGGA-CCGACCCGATCCCCCCTACCTGCTATCGATCCTACTGCCATAACCCTCGGT
255 GCAAGAC-AAGGATCAG-CCCGATCCCCCTTACGTGCTGTCGATCCTACTACCGCAACCCTCGGT
* * * *
14356132 TCGGTCTAATT
318 CCGATCCAATA
* ** * * * * * *** * *
14356143 TTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCTATGAAACGAGTGAT-CGGACACTAAGC
1 TTAGACTGGGAAAGAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGCG-TGCGGGTGCTCAGT
** * * * * ** * * * *
14356207 CAGTCAAAAAAGTATAATGCGTAAG-CTAGGGATC-GACCCGATCCCCTTCTGCGTGTTACCG--
65 CAACCGAAGAGGCATAATGCACAAGCCGA-GGATCAG-CCCGATCCCCCTCTGCATGCTACCGAT
* * * * *
14356268 ---G-T-CCCGT--TGCT---GCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATG-ACTTCG
128 CTCGCTACCGGTCCTGCTACCGCAACCCTCGGTCCGATTCGATCTTAGACTAGGAATGAACTT-G
* *
14356322 TATGCCTAAGTCAACCCACGAAATGAGAGATCGGGCGCTAAGCCAGTCAGAGAGGCAGAATGCGC
192 TATGCCTAAGCCAACCCACGAAATGAGAGATCGGACGCTAAGCCAGTCAGAGAGGCAGAATGCGC
* * *
14356387 AAGACAAGGATCAGCCCGATCCCCCTTGCGTGCTGTTGATCCTGCTACCGCAACCCTCGGTCCGA
257 AAGACAAGGATCAGCCCGATCCCCCTTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGA
*
14356452 TCCAATC
322 TCCAATA
* *
14356459 TTCGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTC
1 TTAGACTGGGAAAGAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTC
** * * * * **
14356524 GGCCGAAGAGGCATAATGCACAAGCTGGGGATCAGTCTGATCCCCCTCTGCATGCTGTCGATCTC
66 AACCGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCTC
* ** * ** *
14356589 GCTACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGGC-ATGGAATGAACTATGTA
131 GCTACCGGTCCTGCTACCGCAACCCTCGGTCCGATTCGATCTTAGACTA-GGAATGAACT-TGTA
* * * * * *
14356653 TTCCTAAGCCAACCCATGAAATGAGCG-TACGGACGCTAAGCCGGTCGGAGAGGCAGAATGCGTA
194 TGCCTAAGCCAACCCACGAAATGAGAGAT-CGGACGCTAAGCCAGTCAGAGAGGCAGAATGCGCA
* * * ** *
14356717 AGTCAGGGAT-TGACCCGATCCCTTTCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTG
258 AGACAAGGATCAG-CCCGATCCCCCT-TACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCG
* **
14356781 GTCTGATA
321 ATCCAATA
* * * **
14356789 TTAGACTGGGAATGAACTCTGTAAGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGGGTC
1 TTAGACTGGGAAAGAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTC
* *
14356854 AACC-AGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC-
66 AACCGA-AGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCT
*** * *
14356917 CTGCTGTTGGTCCTGCTGCCGCAACCCTCGGTCCGATTTGATCTTAGACTAGGAATGAACTCTGT
130 C-GCTACCGGTCCTGCTACCGCAACCCTCGGTCCGATTCGATCTTAGACTAGGAATGAACT-TGT
14356982 ATGC
193 ATGC
14356986 TTAGACATGG
Statistics
Matches: 652, Mismatches: 155, Indels: 69
0.74 0.18 0.08
Matches are distributed among these distances:
314 3 0.00
315 56 0.09
316 171 0.26
317 4 0.01
319 4 0.01
321 4 0.01
322 1 0.00
323 5 0.01
325 4 0.01
326 1 0.00
327 78 0.12
328 40 0.06
329 80 0.12
330 200 0.31
331 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (328 bp):
TTAGACTGGGAAAGAACTCCGTAAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTC
AACCGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCTC
GCTACCGGTCCTGCTACCGCAACCCTCGGTCCGATTCGATCTTAGACTAGGAATGAACTTGTATG
CCTAAGCCAACCCACGAAATGAGAGATCGGACGCTAAGCCAGTCAGAGAGGCAGAATGCGCAAGA
CAAGGATCAGCCCGATCCCCCTTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGATCCA
ATA
Found at i:14356997 original size:26 final size:26
Alignment explanation
Indices: 14356959--14357010 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14356949 CCGATTTGAT
*
14356959 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14356985 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14357011 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14357391 original size:159 final size:159
Alignment explanation
Indices: 14356984--14357407 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 159
14356974 AACTCTGTAT
*
14356984 GCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGACTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * *
14357049 TCGGCCGGAGAGGT-AGAATGCACAAGTCAGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGAT
66 TCGGCCGGAGA-GTCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
* * * *
14357113 CCTACTACCGCAACCCTCTGTCTGGTCTGA
130 CCCACTACCACAACCCTCTGTCTCGACTGA
* * * ** * * * * *
14357143 TCTTAGAC-TAGGAATGAACTCCGTAAGCCTAAG-TCAACCCATGAAATGAGTGTACGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGACTAAGCT-AACCCACAAAACGAGCGTGCGGGCGCTC
* * * * * * * * *
14357206 GGTCGACCGAAGAGGCATACTACACAAGCCAGGGATCGGCCCGATCCCCCTCTGCTTGCTGTCGA
64 AGTCGGCCGGAGAGTCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGA
** * *
14357271 TCCCGTTGCCACAACCCTC-GATC-CGACTGGG
129 TCCCACTACCACAACCCTCTG-TCTCGACT-GA
* ***
14357302 GCTTAGACATGGAATGAACTCCCTATGTGGAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGACTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * ** *
14357367 CCGGTCGGAGAGTCAGAATGCACAAGCTGGGGATCTACCCG
66 TCGGCCGGAGAGTCAGAATGCACAAGCCAGGGATCGACCCG
14357408 GTCCTTCCTG
Statistics
Matches: 201, Mismatches: 57, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
158 6 0.03
159 193 0.96
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGACTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGTCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
CCACTACCACAACCCTCTGTCTCGACTGA
Found at i:14357502 original size:26 final size:26
Alignment explanation
Indices: 14357461--14357512 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14357451 CCAGTTCGAT
14357461 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14357487 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14357513 TGTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14358194 original size:26 final size:26
Alignment explanation
Indices: 14358156--14358208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14358146 GGCTCAAACT
14358156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14358182 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14358208 C
1 C
14358209 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14358470 original size:159 final size:157
Alignment explanation
Indices: 14358181--14358620 Score: 476
Period size: 159 Copynumber: 2.8 Consensus size: 157
14358171 AACTCCGTAT
* * * * * *
14358181 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCTAACCCATGAAAC-GAGCGTGGGGCTGTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTCGGG-TGCTCA
* * * * ** * *
14358245 GTCGGCCGGAGAGGTAGAATACGCAATCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGAT
64 G-CCGACGGAGAGGTAGAATGCGTAAGGCAGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGAT
* *
14358310 CCTGCTACCACAACCCTCGGTCCGGCTGGG
128 CCCGCTACCACAACCCTCGGTCCGACTGGG
*
14358340 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGT-CGGGTGCTCAG
* * *
14358405 CCGATCGGAGAGGTAAAATGCGTAAGAGC-GGGATCGCCCCGGTCCCCTTCTGCGTGCTA-CTGA
65 CCGA-CGGAGAGGTAGAATGCGTAAG-GCAGGGATCGACCCGGTCCCCCTCTGCGTGCTATC-GA
* *
14358468 TCCCGCTGCCACAACCCTCGGTCTGACTGGG
127 TCCCGCTACCACAACCCTCGGTCCGACTGGG
* * * * * *
14358499 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGT-CGGGTGCTCAG
* * *
14358564 CCGACAGGAGAGGTAGAATGTGT-AGGTCAGGGATCGGCCCGGTCCCCCT-TGAGTGCT
65 CCGAC-GGAGAGGTAGAATGCGTAAGG-CAGGGATCGACCCGGTCCCCCTCTGCGTGCT
14358621 GCCGTAACCT
Statistics
Matches: 239, Mismatches: 34, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
157 1 0.00
158 14 0.06
159 218 0.91
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTCGGGTGCTCAGC
CGACGGAGAGGTAGAATGCGTAAGGCAGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGATCCC
GCTACCACAACCCTCGGTCCGACTGGG
Found at i:14358697 original size:26 final size:26
Alignment explanation
Indices: 14358646--14358698 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14358636 CTGATTTGAT
* **
14358646 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14358672 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14358698 C
1 C
14358699 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14359237 original size:26 final size:26
Alignment explanation
Indices: 14359194--14359245 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14359184 GATACCGATG
*
14359194 TTAGACTGGGAATTAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
14359220 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14359246 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14360360 original size:26 final size:26
Alignment explanation
Indices: 14360324--14360402 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
14360314 CCAGTCCGAT
14360324 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14360350 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATG
14360376 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
14360402 C
1 C
14360403 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14360703 original size:170 final size:171
Alignment explanation
Indices: 14360404--14360710 Score: 375
Period size: 171 Copynumber: 1.8 Consensus size: 171
14360394 TCTGTATGCC
* * * *
14360404 TAAGTCAACCCAAAAAATGAGCGTACGGGTGCTCAGCCGGCCGGAGAGGCATAATGAGCAAGCCG
1 TAAGCCAACCCAAAAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGAGCAAGCCG
* * * *
14360469 GGGATCAGCTCGATCCCCCTATGCGTGCTGCCGATCCTGTTGCCGGTCCAACTGCCACAACCCTC
66 GGGAACAGCCCGATCCCCCTATGCGTGCTGCCGATCCTGCTGCCGGTCCAACTACCACAACCCTC
14360534 GGTCCGACTAGGGCCTAGACATGTAATGAACTCCATATATG
131 GGTCCGACTAGGGCCTAGACATGTAATGAACTCCATATATG
** * ** * *
14360575 TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTTGGTCGGAGAGGCAGAAT-ACGCAAGTC
1 TAAGCCAACCCAAAAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGA-GCAAGCC
* * * * * ** **
14360639 GGGGAACGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACTGCAACCCT
65 GGGGAACAGCCCGATCCCCCTATGCGTGCTGCCGATCCTGCTGCCGGTCCAACTACCACAACCCT
14360703 CGGTCCGA
130 CGGTCCGA
14360711 TCCGATCTTA
Statistics
Matches: 111, Mismatches: 24, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
170 44 0.40
171 67 0.60
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (171 bp):
TAAGCCAACCCAAAAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGAGCAAGCCG
GGGAACAGCCCGATCCCCCTATGCGTGCTGCCGATCCTGCTGCCGGTCCAACTACCACAACCCTC
GGTCCGACTAGGGCCTAGACATGTAATGAACTCCATATATG
Found at i:14361245 original size:158 final size:158
Alignment explanation
Indices: 14360743--14361238 Score: 459
Period size: 159 Copynumber: 3.1 Consensus size: 158
14360733 ACTCTGTATG
* * *
14360743 CTTAGACATGGAATGAACTCCATTTGCCTAAGCCAATCCATGAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * * ** * *
14360808 CGACCAGAGAGGCAGAAAGCATAAGTCGGGGATCGACCCTGTCCC-CCCTTGCGTGCTGTCGATC
66 CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGGCCAGTCCCTCCC--GTGTGCTGTCGATC
* * * * * *
14360872 CTACTATCGGAACCCTCAAT-CTAGTCTGAT
129 CTGCTACCGCAACCCTCAGTCCGATTC-GAT
* * * * * * *
14360902 CTTAGA-TTGGAAATGAACTCCATATGCCTAAGTCAACCCACGAAATGACCGTGTGGGCACTGAG
1 CTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
14360966 CTGGCCGGAGAGGCATAATGCGTAAGTCGAGGATC-GGCTCGGCCCCTCTC-TACGTGCTG-CGG
65 CCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGGC-CAGTCCCTCCCGT--GTGCTGTC-G
* * * * * *
14361028 GTCCCGCTACCACAACCCTCGGTCCGGTTGGCA-
126 ATCCTGCTACCGCAACCCTCAGTCCGATTCG-AT
* * *
14361061 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * *
14361126 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGGCCAGTCCCTCCCGTGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGGCCAGTCCCTCCCGTGTGCTGTCGATCCT
*
14361191 GCTACCGCAACCCTCTGTCCGATTCGAT
131 GCTACCGCAACCCTCAGTCCGATTCGAT
14361219 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
14361239 TGTATGCTTA
Statistics
Matches: 263, Mismatches: 60, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
157 2 0.01
158 55 0.21
159 194 0.74
160 12 0.05
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGGCCAGTCCCTCCCGTGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCCGATTCGAT
Found at i:14361270 original size:26 final size:26
Alignment explanation
Indices: 14361219--14361271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14361209 CCGATTCGAT
**
14361219 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
14361245 CTTAGATTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14361271 C
1 C
14361272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14361965 original size:26 final size:26
Alignment explanation
Indices: 14361928--14361979 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14361918 GCTCAAAATA
*
14361928 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14361954 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
14361980 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14362882 original size:159 final size:156
Alignment explanation
Indices: 14362593--14363444 Score: 529
Period size: 159 Copynumber: 5.4 Consensus size: 156
14362583 CTGCTATCGG
* * * * ** *
14362593 TCCTGCTGCCACAACCCTTGGTCTGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGATCTG-GTCGATCTTAGA-ATGGGAATGAACTCCGCATGCCTAAG
* ** ** * * * * *
14362657 CCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGAGAGGTAGAATGTGCAAGCTGGGGA
64 CCAACCCATGAAACGAGCGTATGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * *
14362722 TCGACCTGGTACCCCCATACATGCTGTCAA
129 TCGACCT-GT-CCCCCCTGCGTGCTGTCAA
* * *
14362752 TCCTGCTACCACAACCCTCGATCTGGTCCGATCTTAGATTGGGAATGAACTCCGCATGCCTAAGT
1 TCCTGCTGCCACAACCCTCGATCTGGT-CGATCTTAGAATGGGAATGAACTCCGCATGCCTAAGC
* * * * *
14362817 CAACCCATGAAACGAGCATATGGGCACTGAGTCGGTCGGGGAGGCATAATGCGCAAGCCGGGGAT
65 CAACCCATGAAACGAGCGTATGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * *
14362882 CAGCCCTGTCCCCCTCTGTGTGCTG-CTAG
130 C-GACCTGTCCCCC-CTGCGTGCTGTC-AA
* * * ** * *
14362911 T-CTCACTGCCACAACCCTCGATCCTGCTGGGGCTTAGAGAT-AGAATGAACTCC-CTATACCTA
1 TCCT-GCTGCCACAACCCTCGAT-CTGGTCGATCTTAGA-ATGGGAATGAACTCCGC-ATGCCTA
* * * * * *
14362973 AGCCAACCCATGAAA-TAGGCGTGTGAGCGCTCAACCGGTCGGAGAGGTAGAATGCGCAAGCCGG
62 AGCCAACCCATGAAACGA-GCGTATGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGG
* * *
14363037 GGATCGACTCCT-TCCCCCCCGCGTGCTATCGA
126 GGATCGA--CCTGTCCCCCCTGCGTGCTGTCAA
* * * * * * * * *
14363069 TCCTGCTGCCGCAACCCTCGGTCCAGTTTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTGCCACAACCCTCGAT-CTGGTCGATCTTAGAATGGGAATGAACTCCGCATGCCTAAGC
* * * * * *
14363134 CAACCCATGAAATGAGCGTATGGGCACTGAGCCGATCGGAGAGGCATAATTCGCAAGCCGAGGAC
65 CAACCCATGAAACGAGCGTATGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGA-
* ** * **
14363199 TTGTTCGGTCCCCCTCTGCGTGCTGTCGG
129 TCGACCTGTCCCCC-CTGCGTGCTGTCAA
** * * ** * **
14363228 TCCCACTAG-CACAACCCTCGGTCTGGTTGGGGCTTAGACAT-AGAATGAACTCCTTATGCCTAA
1 TCCTGCT-GCCACAACCCTCGATCTGG-TCGATCTTAGA-ATGGGAATGAACTCCGCATGCCTAA
* * * * * * * * *
14363291 GCCAACCCATGAAACGGGCGTGCT-GGCGCTTAGCCGATCGAAAAGGCAGAATGCACAAGCCGAG
63 GCCAACCCATGAAACGAGCGT-ATGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGG
* * * *
14363355 GATCGGCTCGGTCCCCCCTGCGTGCTGCCGA
127 GATCGAC-CTGTCCCCCCTGCGTGCTGTCAA
* * * * * * *
14363386 TCC-GACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
1 TCCTG-CTGCCACAACCCTCGATCTGGTC-GATCTTAGAATGGGAATGAACTCCGCATGC
14363445 TTAGACTGGG
Statistics
Matches: 538, Mismatches: 126, Indels: 59
0.74 0.17 0.08
Matches are distributed among these distances:
157 4 0.01
158 182 0.34
159 337 0.63
160 15 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (156 bp):
TCCTGCTGCCACAACCCTCGATCTGGTCGATCTTAGAATGGGAATGAACTCCGCATGCCTAAGCC
AACCCATGAAACGAGCGTATGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC
GACCTGTCCCCCCTGCGTGCTGTCAA
Found at i:14363180 original size:317 final size:313
Alignment explanation
Indices: 14362598--14363444 Score: 973
Period size: 317 Copynumber: 2.7 Consensus size: 313
14362588 ATCGGTCCTG
* * *
14362598 CTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTG-CTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * *
14362663 CACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGAGAGGTAGAATGTGCAAGCTGGGGATCGACC
65 CATGAAAAG-GCGTG-TGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGA-C
* * * * * * * * * * *
14362728 TGGTACCCCCATACATGCTGTCAATCCTGCTACCACAACCCTCGATCTGGTCCGATCTTAGATTG
127 TCGTTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT-
* * * *
14362793 GGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGTCGGTCGGGG
191 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGCCGATCGGAG
* * * *
14362858 AGGCATAATGCGCAAGCCGGGGA-TCAGCCCTGTCCCCCTCTGTGTGCTG-CTAGTCTCA
256 AGGCATAATGCGCAAGCCGAGGACT-AGCCCGGTCCCCCTCTGCGTGCTGTC-AGTCCCA
* * *
14362916 CTGCCACAACCCTCGATCCTGCTGGGGCTTAGAGATAGAATGAACTCCCTATACCTAAGCCAACC
1 CTGCCACAACCCTCGGT-CTGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
*
14362981 CATGAAATAGGCGTGTGAGCGCTCAACCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACT
65 CATGAAA-AGGCGTGTG-GCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACT
* * * * * *
14363046 CCTTCCCCCCCGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCAGTTTGATCTTAGACTGT
128 CGTTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG-
* *
14363111 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCACTGAGCCGATCGGAGA
192 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGCCGATCGGAGA
* * ** *
14363176 GGCATAATTCGCAAGCCGAGGACTTGTTCGGTCCCCCTCTGCGTGCTGTCGGTCCCA
257 GGCATAATGCGCAAGCCGAGGACTAGCCCGGTCCCCCTCTGCGTGCTGTCAGTCCCA
* *
14363233 CTAG-CACAACCCTCGGTCTGGTTGGGGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAAC
1 CT-GCCACAACCCTCGGTCT-GCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * * *
14363297 CCATGAAACGGGCGTGCTGGCGCTTAGCCGATCGAAAAGGCAGAATGCACAAGCCGAGGATCGGC
64 CCATGAAA-AGGCGTG-TGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAC
* *
14363362 TCGGTCCCCCCTGCGTGCTGCCGATCC-GACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT
127 TCGTTCCCCCCTGCGTGCTGTCGATCCTG-CTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT
14363426 AGGAATGAACTCCGTATGC
191 -GGAATGAACTCCGTATGC
14363445 TTAGACTGGG
Statistics
Matches: 447, Mismatches: 71, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
316 4 0.01
317 328 0.73
318 111 0.25
319 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (313 bp):
CTGCCACAACCCTCGGTCTGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCC
ATGAAAAGGCGTGTGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGT
TCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAAT
GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGCCGATCGGAGAGGCA
TAATGCGCAAGCCGAGGACTAGCCCGGTCCCCCTCTGCGTGCTGTCAGTCCCA
Found at i:14363447 original size:26 final size:26
Alignment explanation
Indices: 14363418--14363470 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14363408 CCGGTCTGAT
14363418 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14363444 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14363470 C
1 C
14363471 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14364687 original size:26 final size:26
Alignment explanation
Indices: 14364646--14364698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14364636 CTGGTTTGGC
14364646 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14364672 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14364698 C
1 C
14364699 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14365020 original size:171 final size:171
Alignment explanation
Indices: 14364671--14365040 Score: 422
Period size: 171 Copynumber: 2.2 Consensus size: 171
14364661 AACTCCGTAT
* * * * * *
14364671 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCCCTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCCCTCAA
* * **
14364736 CCGATCAGAGAGGCATAATGCACAAGCTGAGGATCAGCCTGGTCCCCCTCTGCGTGCTACCGATC
66 CCGATCAGAGAGGCAGAATGCACAAGCAGAGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATC
* * ** *
14364801 CCACTACCGGTCCTGCTACCATAACCCTCGGTCCGGTTGGG
131 CCACTACCGGTCCTGCTACCACAACCCTCGGTCCGATCCGA
* * * **
14364842 GCTTAGACAT-GGAATGACCTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCCCTCA
* * * *
14364906 ACCGATCGGAGAGGTAGAATGCGCAAGTCAG-GGATCGGCCCAGT-CCCCTCCTGCGTGCTACCG
65 ACCGATCAGAGAGGCAGAATGCACAAG-CAGAGGATCAGCCCAGTCCCCCT-CTGCGTGCTACCG
** * * *
14364969 ATCCTGCTACCGGTCCTGCTGCCGCAATCCTCGGTCCGATCCGA
128 ATCCCACTACCGGTCCTGCTACCACAACCCTCGGTCCGATCCGA
*
14365013 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
14365041 TTAAACATGG
Statistics
Matches: 164, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
170 6 0.04
171 155 0.95
172 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCCCTCAA
CCGATCAGAGAGGCAGAATGCACAAGCAGAGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATC
CCACTACCGGTCCTGCTACCACAACCCTCGGTCCGATCCGA
Found at i:14365043 original size:26 final size:26
Alignment explanation
Indices: 14365023--14365092 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
14365013 TCTTAGACTG
14365023 GGAATGAACTCCGTATGCTTAAACAT
1 GGAATGAACTCCGTATGCTTAAACAT
14365049 GGAATGAACTCCGTATGCTTAAACAT
1 GGAATGAACTCCGTATGCTTAAACAT
*
14365075 GGATTGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14365093 CTAAGCCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAAACAT
Found at i:14368243 original size:26 final size:26
Alignment explanation
Indices: 14368205--14368257 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14368195 GTCTCAAACT
14368205 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14368231 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
14368257 C
1 C
14368258 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14368574 original size:158 final size:159
Alignment explanation
Indices: 14368230--14368574 Score: 352
Period size: 159 Copynumber: 2.2 Consensus size: 159
14368220 AACTCCGTAT
* * * * *
14368230 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGAGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAG
** * * * * ** ** ** *
14368295 TTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCCCCCTCTGTGTGCTGTCGGTC
66 CCGGCCGAAAAGGCAGAATACGCAAGCCGAAGATCAGCACGGTCCCCCTCTACGTGCTACCGATC
* *
14368360 CTACTACCACAACCCTCTGTCTGGTTGGG
131 CTACTACCACAACCCTCGGTCTGGTTGGA
* * * * * *
14368389 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAG
* * * *
14368454 CCGGCCGAAAAGGCAGAATACGTAAGTCGAAGATCGGCCCGGTCCCCCT-TACGTGCTACCGATC
66 CCGGCCGAAAAGGCAGAATACGCAAGCCGAAGATCAGCACGGTCCCCCTCTACGTGCTACCGATC
* * * *
14368518 CTGCTACCGCAACCCTCGGTTTGGTTTGA
131 CTACTACCACAACCCTCGGTCTGGTTGGA
*
14368547 TCTTAGAC-TAAGAATGAACTCCGTATGC
1 GCTTAGACAT-AGAATGAACTCCGTATGC
14368575 TTAGACAGGA
Statistics
Matches: 150, Mismatches: 35, Indels: 3
0.80 0.19 0.02
Matches are distributed among these distances:
157 1 0.01
158 56 0.37
159 93 0.62
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAG
CCGGCCGAAAAGGCAGAATACGCAAGCCGAAGATCAGCACGGTCCCCCTCTACGTGCTACCGATC
CTACTACCACAACCCTCGGTCTGGTTGGA
Found at i:14369026 original size:158 final size:159
Alignment explanation
Indices: 14368717--14369259 Score: 465
Period size: 158 Copynumber: 3.4 Consensus size: 159
14368707 TTGCCGATCT
* * * *
14368717 TGCTGTTGGTCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * **
14368782 TGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGCCGGCTGGAGAGGTAGAATGTGCAA
66 TGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCACAA
*
14368847 GCCAGGGACCGACCCAGT-CCCCTCTACG
131 GCCAGGGACCAACCCAGTCCCCCTCTACG
** *
14368875 TGCTGTCGATCCTGCTATCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGTATGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * ** *
14368940 TGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGTTGAGCC-TTTCGGAGAGGTATAATGCACA
66 TGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCT-GGAGAGGTAGAATGCACA
* * * *
14369004 GGTCGGGGATCAACCC-GATCCCCCTCTACG
130 AGCCAGGGACCAACCCAG-TCCCCCTCTACG
* * ** *
14369034 TGCTG-CTGATCCCGCTGCCACAACCCTCGGTCCGGATGGGGT-TTAGACAT-GGAATGAACTCC
1 TGCTGTC-GATCCTGCTGCCACAACCCTCGGTCCAG-TCCGATCTTAGAC-TGGGAATGAACTCC
* * * * * ** * *
14369096 TTATGCCTAAGCCAACCCACAAAATG-GCCGTGCGGGTGCTCAGTTGGTTGGAGAGGCAGAATGC
63 GTATGCCTAAGCCAACCAACGAAACGAG-CGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGC
* * **** * * *
14369160 GCAAGCCGGGGATTGGCCCGGTCCCCC-ATGCG
127 ACAAGCCAGGGACCAACCCAGTCCCCCTCTACG
* ** * ** * *
14369192 TTCTACCGATCCTGCTGCCGCAACCCTCAATTC-GATCCGATCTTAGACTGGGAATGAACTCCAT
1 TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGT
14369256 ATGC
65 ATGC
14369260 TTAGACTGGG
Statistics
Matches: 309, Mismatches: 64, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
157 8 0.03
158 172 0.56
159 122 0.39
160 7 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCACAA
GCCAGGGACCAACCCAGTCCCCCTCTACG
Found at i:14369269 original size:26 final size:26
Alignment explanation
Indices: 14369233--14369285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14369223 TCGATCCGAT
14369233 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14369259 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14369285 C
1 C
14369286 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14369995 original size:26 final size:26
Alignment explanation
Indices: 14369955--14370007 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14369945 GGCTCAAACT
* *
14369955 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAAATCCATATG
14369981 CTTAGACATGG-AATGAAATCCATATG
1 CTTAGAC-TGGAAATGAAATCCATATG
14370007 C
1 C
14370008 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAAATCCATATG
Found at i:14371232 original size:26 final size:25
Alignment explanation
Indices: 14371182--14371233 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
14371172 GGCTCAAACT
*
14371182 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCATATG
* *
14371207 CTTAGACTAGGGATGAACTCTATATG
1 CTTAGACT-GGAATGAACTCCATATG
14371233 C
1 C
14371234 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:14371420 original size:26 final size:26
Alignment explanation
Indices: 14371391--14371443 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14371381 CTGATCCGAT
14371391 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14371417 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14371443 C
1 C
14371444 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14371671 original size:158 final size:155
Alignment explanation
Indices: 14371417--14371916 Score: 484
Period size: 158 Copynumber: 3.2 Consensus size: 155
14371407 ACTCCGTATG
* *
14371417 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTTAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGAGTGCGGGCG-TTAG
* * * *
14371481 CCGGTTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTACATGCTGTCGATCC
63 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCCCTACGTGCT-TCGATCC
*
14371546 TGCTGCCACAACCTTCGGTCTGGTCTGAT
127 TGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * * *
14371575 CTTGGACTAGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCGTTCGGGCGTTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGAGTGCGGGCGTT-AGC
** * * * * *
14371640 CGACCAGAGAGGCATAATGCGCAAACCGGGGACCAGCTCGATCCCCCTCTACGTGCTTCTAGTCC
64 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCC-CTACGTGCTTCGA-TCC
* * **
14371705 CGCTGCCACAACCCTCTGTCTGGT-TGGGG
127 TGCTGCCACAACCCTCGGTCTGGTCT-GAT
* * * * *
14371734 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCGAACCCACGAAATGGGAGTGCGGGCGCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGAGTGCGGGCG-TTAG
** * * * * * * *
14371798 TTGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCTCCCCTGCGTGCTACCGATCT
63 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCCCTACGTGCT-TCGATCC
* * *
14371863 TACTGTCGCAACCCTCGGTCTGGTCTGAT
127 TGCTGCCACAACCCTCGGTCTGGTCTGAT
*
14371892 CTTAGACTAGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
14371917 ACTGGGAATG
Statistics
Matches: 271, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 147 0.54
159 121 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (155 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGAGTGCGGGCGTTAGCCG
GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCCCTACGTGCTTCGATCCTGCT
GCCACAACCCTCGGTCTGGTCTGAT
Found at i:14372337 original size:26 final size:26
Alignment explanation
Indices: 14372299--14372351 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14372289 CTAGTCCGAT
14372299 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
14372325 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
14372351 C
1 C
14372352 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:14372580 original size:26 final size:26
Alignment explanation
Indices: 14372542--14372594 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14372532 GGCTCAAAAT
14372542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14372568 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14372594 C
1 C
14372595 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14373140 original size:159 final size:159
Alignment explanation
Indices: 14372567--14373157 Score: 490
Period size: 159 Copynumber: 3.8 Consensus size: 159
14372557 AACTCCGTAT
* * ** *
14372567 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTATGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * * *
14372632 CCGGTTGAAGAGGCAGAATGCACAGGCCGGGGATC-ACTCCGATCCCCC-CTGTGTGCTGTCGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CCGATCCCCCTCTGCGTGCTATCGAT
* * * * * *
14372695 CCTACTGTCGCAACCCTCGGTTTGGTTCGA
130 CCCACTGCCACAACCCTCGGTTTAGTTGGG
* * * * * * * *
14372725 TCTTAGA-TTAGGAATGAACTCCGTTTGCCTAAGTCAACCCATGAAACTAGCGTGCGAGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
* * * * * * * * * * * * *
14372789 GTCGATCGGAGTGGTATAATGCGCAAGCCAGGGATCAACCCGGTCTTCCGT-TACGCGCTATCGG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC-CCCCTCTGCGTGCTATCGA
* * *
14372853 TCCCGCTGCCACAACCCTCGG-CTCGATTGGG
129 TCCCACTGCCACAACCCTCGGTTTAG-TTGGG
* * * * *
14372884 GCTTAGACATGGAATGAACTCCCTATGCCT------A-CCATGAAACGGGCGTGCGGGGGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * *
14372942 CCGG-CTGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTCTGCATGCTACCGAT
66 CCGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGAT
*
14373006 CCCACTGCCACAGCCCTCGGTTTAGTTGGG
130 CCCACTGCCACAACCCTCGGTTTAGTTGGG
* * * *
14373036 GCTTAGTCATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * *
14373101 TCGGTCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCT
14373158 GCCAATTCTG
Statistics
Matches: 335, Mismatches: 81, Indels: 34
0.74 0.18 0.08
Matches are distributed among these distances:
151 4 0.01
152 112 0.33
153 3 0.01
157 1 0.00
158 92 0.27
159 121 0.36
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGATC
CCACTGCCACAACCCTCGGTTTAGTTGGG
Found at i:14375268 original size:26 final size:26
Alignment explanation
Indices: 14375230--14375282 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14375220 GGCTCAAAAT
*
14375230 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14375256 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14375282 C
1 C
14375283 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14376137 original size:26 final size:26
Alignment explanation
Indices: 14376086--14376138 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14376076 TTGGTCTGAT
* *
14376086 CTTAGCCTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14376112 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14376138 C
1 C
14376139 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14377042 original size:26 final size:27
Alignment explanation
Indices: 14377013--14377066 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
14377003 CCAGTCTGAT
*
14377013 CTTAGACT-ATGAATGAACTCCATATG
1 CTTAGACTGAGGAATGAACTCCATATG
* *
14377039 CTTAGACTGGGGCATGAACTCCATATG
1 CTTAGACTGAGGAATGAACTCCATATG
14377066 C
1 C
14377067 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (27 bp):
CTTAGACTGAGGAATGAACTCCATATG
Found at i:14377398 original size:26 final size:26
Alignment explanation
Indices: 14377369--14377421 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14377359 CCGATCTGAT
14377369 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14377395 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14377421 C
1 C
14377422 CTATGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14377651 original size:343 final size:349
Alignment explanation
Indices: 14376856--14377664 Score: 860
Period size: 355 Copynumber: 2.3 Consensus size: 349
14376846 ACTCCACATC
* * * *
14376856 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-GCTCAGC
1 CTTAGACATCGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* ** * * ***
14376920 CAGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCC-AGTCCCCCCTGCGTGTTGCCGATCC
66 CAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGA-TCCCCCCTGCATACAGCCGATCC
* *
14376984 TGCTGCCGTAACCCTTGATCCAGTCTGATCTTAGACTATGAATGAACTCCATATGCTTAGACTGG
130 TGCTGCCGTAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACT-G
* * * ***
14377049 GGCATGAACTCCATATGCCTAAGTCAACCCACGAAACGATCGTGCAGTTGCTCAGCCGGTCAGGG
194 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGTCAGGG
** * * * * * * * *
14377114 AGGCTTAATCCGTAAGCCGGGGATCAGCCCGGTCTCTCTCTGCATGCTGTCGATCCTGCTGCTAG
259 AGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCCCCCTACATGCTATCGA-CATGC-GCTA-
*
14377179 TCCTACTGCCACAACCATCGGTCCGGCTCAGG
321 -CCTACTG-C-CAACCATCAGTCCGGCTCAGG
* *
14377211 CTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACAAGCGA-GCGGGCGCTCA
1 CTTAGACATCGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGC-ATGCGGGCGCTCA
* * * * *
14377274 GCCGGTCGGAGAGGCAGAATGCGCAAGTCAAGGATCGGCCCGATCCCCCTTGCATACAGTCGATC
64 GCCAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTGCATACAGCCGATC
* * *
14377339 CTGCTGCCGTAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACA
129 CTGCTGCCGTAACCCTCGATCCAG-TCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC-
* * * * *
14377403 T-GGAATGAACTCCGTATGCCTATGCCAACCCATGAAACGAGCGTGCCGGCACTCAGCTGGTC-G
192 TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGTCAG
*
14377466 GAGAGGCAGAATACGCAAGCCGGGGATC-GACCCGGTCCCCCCCTACGTGCTATC-A-AT-C-CT
257 G-GAGGCAGAATACGCAAGCCGGGGATCAG-CCCGGTCCCCCCCTACATGCTATCGACATGCGCT
* *
14377526 A-CTACTG-CAACCCTCAGTCCGG-TGC-GAT
320 ACCTACTGCCAACCATCAGTCCGGCT-CAG-G
* *
14377554 CTTAGAC-TACGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAG
1 CTTAGACAT-CGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * *
14377618 CCAGCCGGAGAGGCATAATGTGCAAGCCAAGGATCGGCCCGGTCCCC
65 CCAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCC
14377665 TTTTGCATGC
Statistics
Matches: 384, Mismatches: 57, Indels: 38
0.80 0.12 0.08
Matches are distributed among these distances:
342 4 0.01
343 109 0.28
344 1 0.00
346 6 0.02
349 3 0.01
351 1 0.00
352 1 0.00
354 4 0.01
355 142 0.37
356 111 0.29
357 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (349 bp):
CTTAGACATCGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTGCATACAGCCGATCCT
GCTGCCGTAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGG
AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGGTCAGGGAG
GCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCCCCCTACATGCTATCGACATGCGCTACCTAC
TGCCAACCATCAGTCCGGCTCAGG
Found at i:14377885 original size:26 final size:26
Alignment explanation
Indices: 14377844--14377896 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14377834 CTGGTCCGAT
*
14377844 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14377870 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTTCGTATG
14377896 C
1 C
14377897 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14378944 original size:159 final size:158
Alignment explanation
Indices: 14378553--14378998 Score: 436
Period size: 159 Copynumber: 2.8 Consensus size: 158
14378543 AACTCCGTAT
** * *
14378553 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAAACCACGAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
** * * * * *
14378618 TTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCT
66 CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
** ** *
14378683 TGCTACCGTAACCCTTCATCTGATCTGA
131 CACTACCACAACCCTTCATCAGATCTGA
* ** * * * * **
14378711 TCTTAGAC-TGGGAATGAACTCCGTATGCAGAAGTCAACCCAAGAAACGAGCGTGCGGGTGCAGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
** * * * * * *
14378775 GCCAATCGAAGAGGCATAATTCACAAGCAGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGT
65 GCCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCC-CTGCGTGCTGCCGAT
* *
14378840 CCCACTACCACAACCC-TCGGTCCAG-T-TGGG
129 CCCACTACCACAACCCTTC-AT-CAGATCT-GA
*
14378870 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGCGCTCA
* * * *
14378934 GCCGGCCGAAGATGCAGAATGCACAAGCCGAGGATTGGCCCGGT-CCCCCTGCGTGCTGTCGATC
65 GCCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCCGATC
14378998 C
130 C
14378999 TGCTACCGCA
Statistics
Matches: 224, Mismatches: 57, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 16 0.07
158 95 0.42
159 110 0.49
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
CACTACCACAACCCTTCATCAGATCTGA
Found at i:14384488 original size:159 final size:158
Alignment explanation
Indices: 14384186--14384688 Score: 370
Period size: 159 Copynumber: 3.2 Consensus size: 158
14384176 ACTCTGTATG
* * * * * * *
14384186 CTTAGAC-ATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGTGCGCTCAT
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCAATGAAACGAGCATGCGGGCACTCAG
* * * * ** * * * * **
14384250 CCGGTCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCC-GATCCCTCCATGCGTGCTGTCGAT
65 CCAGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGA-CCC-CCATCCGTGCTACCGAT
** **
14384314 CCTACTACCGTAACCCTCGATCTGGTCCGAT
128 CCCGCTACCACAACCCTCGATCTGGTCCGAT
* * *
14384345 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCAATGAAACGAGCATGCGGGCACTCAGC
* * ** * * *
14384410 CAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACTTGGTAACCCTC-TGCGTGCTACCGGTC
66 CAGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGG--ACCCCCATCCGTGCTACCGATC
* * * * **
14384474 CCGTTGCCACAACCCTCGATTTGG-CTGGGG
129 CCGCTACCACAACCCTCGATCTGGTC-CGAT
* * * * * ** ***
14384504 CTTGGAC-ATTGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGGGTGTGCGGGTGTTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCAATGAAACGAGCATGCGGGCACTCAG
* * * * *
14384568 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGACCCCCATCCGTGCTGCCGATCC
65 CCAGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGACCCCCATCCGTGCTACCGATCC
* * **
14384633 TGCTACGACAACCCTC-AGTCCAGTCCGAT
130 CGCTACCACAACCCTCGA-TCTGGTCCGAT
14384662 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
14384689 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 71, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
157 6 0.02
158 52 0.20
159 198 0.75
160 3 0.01
161 3 0.01
162 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCAATGAAACGAGCATGCGGGCACTCAGC
CAGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGACCCCCATCCGTGCTACCGATCCC
GCTACCACAACCCTCGATCTGGTCCGAT
Found at i:14384691 original size:26 final size:26
Alignment explanation
Indices: 14384662--14384714 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14384652 CCAGTCCGAT
14384662 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14384688 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14384714 C
1 C
14384715 CTTTGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14385219 original size:159 final size:158
Alignment explanation
Indices: 14384872--14385236 Score: 409
Period size: 158 Copynumber: 2.3 Consensus size: 158
14384862 AACTCCATAT
* * * * *
14384872 GCTTAGGCATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAG
* * * * *
14384937 CCGGCTGGAGAGGTAGAATGTATAAGTCGGGGATAGCCCGATCACCCCATGCGTGCTGTTGATCC
66 CCGACTGGAGAGGCAGAATGTACAAGTCGGGGATAGCCCGATCACCCCATGCATGCTGTCGATCC
* *
14385002 TGCTACTACAACCCTCTGTCCGGTCTGA
131 TGCTACCACAACCCTCTGTCCGATCTGA
* *
14385030 TCTTAGAC-TGGCAATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCATACGGGCGCTG
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCATACGGGCGCTC
* * * * * *
14385093 AGCCGATTGGAGAGGCATAATGTGCAAG-CTGGGGATCGATCCGATC-CCCCTCTGCATGCTGTC
64 AGCCGACTGGAGAGGCAGAATGTACAAGTC-GGGGATAG-CCCGATCACCCC-ATGCATGCTGTC
* * *
14385156 GGTCCTGCTACCACAACCCTC-GATTCGAT-TGGG
126 GATCCTGCTACCACAACCCTCTG-TCCGATCT-GA
*
14385189 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
14385237 GGTGTGCGGG
Statistics
Matches: 173, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
157 5 0.03
158 85 0.49
159 79 0.46
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAG
CCGACTGGAGAGGCAGAATGTACAAGTCGGGGATAGCCCGATCACCCCATGCATGCTGTCGATCC
TGCTACCACAACCCTCTGTCCGATCTGA
Found at i:14385268 original size:159 final size:158
Alignment explanation
Indices: 14384888--14385337 Score: 367
Period size: 159 Copynumber: 2.8 Consensus size: 158
14384878 GCATGGAATA
* * * * * * * * *
14384888 AACTCCGTATGCCTAAGC-CAACCCACGAAACAAGCATGCGGGCGCTCAGCCG-GCTGGAGAGGT
1 AACTCCCTATGCCTAA-CTCAACCCATGAAACGAGCATACGGGCGCTCAACCGATC-GAAAAGGC
** * * * * * *
14384951 AGAATGTATAAGTCGGGGATAG-CCCGATCACCCCATGCGTGCTGTTGATCCTGCTACTACAACC
64 AGAATGTGCAAGTCGGGGATCGACCCGATC-CCCCTTGCATGCTATCGATCCTGCTACCACAACC
* * **
14385015 CTCTG-TCCGGTCT-GATCTTAGACTGGCAATG
128 CTC-GATTCGAT-TGGGGCTTAGACTGGCAATG
* * * * * * *
14385046 AACTCCGTATGCCTAACTCAACCCATGAAACGAGCATACGGGCGCTGAGCCGATTGGAGAGGCAT
1 AACTCCCTATGCCTAACTCAACCCATGAAACGAGCATACGGGCGCTCAACCGATCGAAAAGGCAG
* * *
14385111 AATGTGCAAG-CTGGGGATCGATCCGATCCCCCTCTGCATGCTGTCGGTCCTGCTACCACAACCC
66 AATGTGCAAGTC-GGGGATCGACCCGATCCCCCT-TGCATGCTATCGATCCTGCTACCACAACCC
14385175 TCGATTCGATTGGGGCTTAGACATGG-AATG
129 TCGATTCGATTGGGGCTTAGAC-TGGCAATG
* ** * * *
14385205 AACTCCCTATGCCTAAGC-CAACCCATGAAACGGGTGTGCGGGTGCTCAACCGGTCGAAAAGGCA
1 AACTCCCTATGCCTAA-CTCAACCCATGAAACGAGCATACGGGCGCTCAACCGATCGAAAAGGCA
* * * * * * *
14385269 GATTGTGTAAGTCGGGGATCGACCCGATCGCCCTTGCGTGCTATCGATCCTGTTGCCGCAACCCT
65 GAATGTGCAAGTCGGGGATCGACCCGATCCCCCTTGCATGCTATCGATCCTGCTACCACAACCCT
14385334 CGAT
130 CGAT
14385338 CCAGTCCGAT
Statistics
Matches: 238, Mismatches: 44, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 104 0.44
159 127 0.53
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
AACTCCCTATGCCTAACTCAACCCATGAAACGAGCATACGGGCGCTCAACCGATCGAAAAGGCAG
AATGTGCAAGTCGGGGATCGACCCGATCCCCCTTGCATGCTATCGATCCTGCTACCACAACCCTC
GATTCGATTGGGGCTTAGACTGGCAATG
Found at i:14386449 original size:26 final size:26
Alignment explanation
Indices: 14386413--14386465 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14386403 CCGGTCCAAT
*
14386413 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14386439 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14386465 C
1 C
14386466 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14387317 original size:26 final size:26
Alignment explanation
Indices: 14387279--14387331 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14387269 TCGGTCCGAT
*
14387279 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14387305 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14387331 C
1 C
14387332 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14387605 original size:159 final size:157
Alignment explanation
Indices: 14387304--14387731 Score: 486
Period size: 159 Copynumber: 2.7 Consensus size: 157
14387294 AACTCTGTAT
**
14387304 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
14387369 TCGGTTGGAGAGGCAGAATGCGCAAGCCGAGGATCGG-CCTAGTCCCCCCCTACGTGCTATTGAC
66 TC-GTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGA-T-CCCCCCTACGTGCTATAGAC
* *
14387433 CCTGCTGCTACAACCCTCGATTCGGTCT-GA
128 CCTGCTGCCACAACCCTCGATCCGG-CTGGA
* * * *
14387463 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
14387527 GCCGATCGGAGAGGCATAATGCGCAAGCTGGGGACCGGCCCGATCCCCCTTAGCGTGCTGTCAGT
65 GTCG-TCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTA-CGTGCTAT-AGA
* * * *
14387592 TCC-GTTGCCACAACCCTCGGTCCGGCTGGG
127 CCCTGCTGCCACAACCCTCGATCCGGCTGGA
* * *
14387622 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
14387687 TTGGCTGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCC
66 TCGTC-GGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCC
14387732 ATTGATCCTA
Statistics
Matches: 226, Mismatches: 35, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
158 12 0.05
159 207 0.92
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTATAGACCCT
GCTGCCACAACCCTCGATCCGGCTGGA
Found at i:14388707 original size:25 final size:25
Alignment explanation
Indices: 14388679--14388726 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14388669 TCCGATCTTA
14388679 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
*
14388704 GACTGGGGATGAACTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
14388727 GTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:14389899 original size:26 final size:26
Alignment explanation
Indices: 14389847--14389899 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14389837 CCGGTCCAAT
*
14389847 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGCATG
*
14389873 CTTAGACTAGGG-ATGAACTCTGCATG
1 CTTAGACT-GGGAATGAACTCAGCATG
14389899 C
1 C
14389900 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGCATG
Found at i:14390578 original size:26 final size:26
Alignment explanation
Indices: 14390542--14390591 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14390532 CTGGTCTGAT
14390542 CTTAGACTGGGAATGAACTTCGTAAG
1 CTTAGACTGGGAATGAACTTCGTAAG
*
14390568 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTTCGTA
14390592 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTAAG
Found at i:14391676 original size:26 final size:26
Alignment explanation
Indices: 14391624--14391676 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14391614 CCGGTCTGAT
*
14391624 CTTAGACAGGGAATGAACTCTGAATG
1 CTTAGACAGGGAATGAACTATGAATG
** *
14391650 CTTAGACTTGGAATGAACTATGTATG
1 CTTAGACAGGGAATGAACTATGAATG
14391676 C
1 C
14391677 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTATGAATG
Found at i:14392018 original size:125 final size:125
Alignment explanation
Indices: 14391796--14392024 Score: 318
Period size: 125 Copynumber: 1.8 Consensus size: 125
14391786 CCAGTCTGAT
* * * * * *
14391796 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
*
14391861 CAGCCGGAGAGGCATAATGCGCAAGCCAGGATCGACCCACAACCCTCGGTCTAGCTGGTG
66 CAGCCGGAGAGGCAGAATGCGCAAGCCAGGATCGACCCACAACCCTCGGTCTAGCTGGTG
* * *
14391921 CTTAGACAT-GGAATGATCTCCCTATGCCTAAGCCAACCCAC-AAACAGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* *
14391984 CCGGCTGGAGAGGCAGAATGCGCAAGCCATGGATCGACCCA
65 CCAGCCGGAGAGGCAGAATGCGCAAGCCA-GGATCGACCCA
14392025 GTCCCCCTGC
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
124 43 0.48
125 46 0.51
126 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.28, T:0.16
Consensus pattern (125 bp):
CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGCCAGGATCGACCCACAACCCTCGGTCTAGCTGGTG
Found at i:14392106 original size:26 final size:26
Alignment explanation
Indices: 14392077--14392129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14392067 CCGGTCTGAT
14392077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14392103 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14392129 C
1 C
14392130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14392485 original size:26 final size:26
Alignment explanation
Indices: 14392456--14392508 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14392446 CCAGTCCGAT
14392456 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14392482 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14392508 C
1 C
14392509 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14392784 original size:159 final size:154
Alignment explanation
Indices: 14392491--14392983 Score: 463
Period size: 159 Copynumber: 3.1 Consensus size: 154
14392481 GCTTAGACAT
* * * *
14392491 GGAATGAACT-TCGTATGCCTAAGCTAACTCACGAAACGAGCGTGCGGGCGCTCCGCCGGTCGGA
1 GGAATGAACTCT-GTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG-CAGCCGGA
* * * * **
14392555 GAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTTGCGTGCTGTTGATCCTGCTGTCG
63 GAGG-AAAATACGCAAGCCAGGGATCGGCCCGGT-CCCCCTTGCGTGCTGCCGATCCTGCTGTCG
*
14392620 TAACCCTCGGTCCGGTCTGATCTTTGACTG
126 CAACCCTCGGTCCGGT-TGATCTTTGACTG
*
14392650 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCTAGCCGGAG
1 GGAATGAACTCTGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGC-AGCCGGAG
* * * * * * *
14392715 AGGAATAATACGTATGCCAGGGATCGGTCGGGTCCCCCTTTGTGTGCTGCCGATCCTGCTGCCAC
64 AGGAA-AATACGCAAGCCAGGGATCGGCCCGGTCCCCC-TTGCGTGCTGCCGATCCTGCTGTCGC
** *
14392780 AACCCTCGGTCCGGTTGGGGCTTAGACAT-
127 AACCCTCGGTCCGGTT-GATCTTTGAC-TG
** * * * * *
14392809 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCTGGCGCTCAGCCGACTGGAG
1 GGAATGAACTCTGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCAG-CCGGAG
* * * * * *
14392874 AGGCAAAATACACAAGCCGGGGATCGGCCCGATCCCCC-TACGTGCTGCCGATTCTACTGTCGCA
64 AGG-AAAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGTCGCA
* *
14392938 ACCCTCAGTCCAGTTTGATCTTAT-ACTG
128 ACCCTCGGTCC-GGTTGATCTT-TGACTG
*
14392966 GGAATGAACTCTATATGC
1 GGAATGAACTCTGTATGC
14392984 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 51, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 52 0.19
158 12 0.04
159 201 0.74
160 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (154 bp):
GGAATGAACTCTGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGCCGGAGAG
GAAAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGTCGCAACC
CTCGGTCCGGTTGATCTTTGACTG
Found at i:14393008 original size:26 final size:26
Alignment explanation
Indices: 14392957--14393009 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14392947 CCAGTTTGAT
* *
14392957 CTTATACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14392983 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14393009 C
1 C
14393010 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14393190 original size:26 final size:26
Alignment explanation
Indices: 14393154--14393209 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14393144 CCAATCTGAT
14393154 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14393180 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14393206 CTTA
1 CTTA
14393210 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14393243 original size:197 final size:196
Alignment explanation
Indices: 14392886--14393249 Score: 523
Period size: 197 Copynumber: 1.9 Consensus size: 196
14392876 GCAAAATACA
* * * *
14392886 CAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTGCCGATTCTACTGTCGCAACCCTCAGTCCAG
1 CAAGCCGGGGATCGACCCGATCCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCAA
* * *
14392951 TTTGATCTTATACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
66 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * *
14393016 TAACCCATAAAATGAGCGTGCGAGCGCTCAGTCGACCGGAAAGGCCGATGGGAGAGACAGAATGT
131 CAACCCACAAAACGAGCGTGCGAGCGCTCAGTCGACCGGAAAGGCCGATGGGAGAGACAGAATGT
14393081 G
196 G
* * * * * *
14393082 CAAGTCGGGGATTGACCCGATCCCCCCTACGTGCTGCTGGTCCTGCTGCCTCAACCCTCAGTCCA
1 CAAGCCGGGGATCGACCCGAT-CCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCA
* * *
14393147 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCTTAAG
65 ATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
*
14393212 TCAACCCACGAAACGAGCGTGCG-GACGCTCAGTCGACC
130 TCAACCCACAAAACGAGCGTGCGAG-CGCTCAGTCGACC
14393250 AGAGAGGCAA
Statistics
Matches: 146, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
196 19 0.13
197 127 0.87
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (196 bp):
CAAGCCGGGGATCGACCCGATCCCCCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCAA
TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
CAACCCACAAAACGAGCGTGCGAGCGCTCAGTCGACCGGAAAGGCCGATGGGAGAGACAGAATGT
G
Found at i:14394497 original size:26 final size:26
Alignment explanation
Indices: 14394468--14394518 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14394458 TGGTCTAATC
*
14394468 TTAGAC-TGGGAATGAACTCTGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
14394494 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
14394519 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:14394622 original size:184 final size:184
Alignment explanation
Indices: 14394310--14394676 Score: 443
Period size: 184 Copynumber: 2.0 Consensus size: 184
14394300 CCGACTGGGC
* * * * *
14394310 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCTTGGAGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGAGGCGCTCAGCC
* * *
14394375 AGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCCTACATGCAGCCGATCCTG
66 AGTCGGAGAGCCAGAATGCACAAGCCAGGGATCGACTCGATCCCCCCTACATGCAGCCGATCCTG
** * * *
14394440 CTGTCGCAACCCTC-GGTCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGG
131 CTACCGCAACCCTCAGTTC-GATCCAATCTTAGACTGGGAATGAACTCTGTATGG
* *
14394494 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GGCGCTTAGT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-GAGGCGCTCAGC
* ** * * * ** *
14394558 C-GATCGGAGAGCCAGAATGCGCAAGCTGGGGATCGACTTGATCCCCCCTGCGTGTTGTCGATCC
65 CAG-TCGGAGAGCCAGAATGCACAAGCCAGGGATCGACTCGATCCCCCCTACATGCAGCCGATCC
* * *
14394622 TGCTACCGTAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTTTGTATG
129 TGCTACCGCAACCCTCAGTTCGATCCAATCTTAGACTGGGAATGAACTCTGTATG
14394677 CTTAAGTAAA
Statistics
Matches: 153, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 1 0.01
184 148 0.97
185 4 0.03
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGAGGCGCTCAGCC
AGTCGGAGAGCCAGAATGCACAAGCCAGGGATCGACTCGATCCCCCCTACATGCAGCCGATCCTG
CTACCGCAACCCTCAGTTCGATCCAATCTTAGACTGGGAATGAACTCTGTATGG
Found at i:14395031 original size:26 final size:26
Alignment explanation
Indices: 14394980--14395032 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14394970 CTGATCCCAT
* **
14394980 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAACGAACTCCATATG
14395006 CTTAGACATG-GAACGAACTCCATATG
1 CTTAGAC-TGAGAACGAACTCCATATG
14395032 C
1 C
14395033 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTCCATATG
Found at i:14395263 original size:159 final size:158
Alignment explanation
Indices: 14395006--14395507 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 158
14394996 ACTCTGTATG
* *
14395006 CTTAGACATGGAACGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * *
14395071 CAGCCGGAGAGGCAGAATGCGTAAG-CTGGGGATCGGCCCGATCCCCCTCTTCGTGCTGTCGATC
66 CGGCCGGAGAGGCAAAATGCGTAAGTC-GGGGATCGGCCCGATCCCAC-CTACGTGCTGTCGATC
* * *
14395135 CTGCTACCATAACCCTCGGTTTGGTCCAAT
129 CTGCTACCACAACCCTCGGTTCGGTCCGAT
* * * * *
14395165 CTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAACGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14395229 CCGGCCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCAATCCCACCTGCGTGCTATCGGTCC
65 CCGGCCGGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGATCCCACCTACGTGCTGTCGATCC
** * * * * * **
14395294 CACTGCCACAACCCTC-GATCCGACTGGGG
130 TGCTACCACAACCCTCGGTTCGGTC-CGAT
** * * * *
14395323 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAGT
1 CTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** ** * *
14395388 CGATCGGAGAGGCAAAATGCGTAAGTCGGGGATCGATCCGGTCCCTCCTACGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGATCCCACCTACGTGCTGTCGATCCT
* * *
14395453 GCTACCGCAACCCTCGGTCCGGTCTGAT
131 GCTACCACAACCCTCGGTTCGGTCCGAT
14395481 CTTAGAC-TGGGAACGAACTCCGTATGC
1 CTTAGACAT-GGAACGAACTCCGTATGC
14395508 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 64, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
157 5 0.02
158 167 0.61
159 100 0.37
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGATCCCACCTACGTGCTGTCGATCCT
GCTACCACAACCCTCGGTTCGGTCCGAT
Found at i:14395283 original size:513 final size:501
Alignment explanation
Indices: 14394286--14395691 Score: 1513
Period size: 513 Copynumber: 2.8 Consensus size: 501
14394276 GGTCTTGCTG
* * * *
14394286 CCACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCAC
* * * ** ** * * * ** * * * *
14394350 GAAATGAGC-TTGGAGGTGCTCAG-CCAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCTC
66 AAAACGGGCGTACG-GGCACTCAGTCGA-TCGGAGAGGCAAAACGCGTAAGTCGGGGATCGACCC
* * * * * * ** * * * **
14394413 GGTCCCCCCTACATGCAGCCGATCCTGCTGTCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGG
129 GATCCCTCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGATCCCATCTTAGACTGGG
*
14394478 AATGAACTCTGTATGGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
194 AATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* * * * * **
14394543 GTGCGGGCGCTTAGTC-GATCGGAGAGCCAGAATGCGCAAGCTGGGGATCGACTTGATCCCCCCT
259 GTGCGGGCGCTCAGCCAG-TCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCT
* * * * *
14394607 GCGTGTTGTCGATCCTGCTACCGTAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTTT
323 GCGTGCTGTCGATCCTGCTACCATAACCCTCAGTTCGATCCAATCTTAGACTAGGAATGAACTCT
* * * * *
14394672 GTATGCTTAAGTAAACCCACAAAATGAGCGTTCGGGCATTGAGCGGGCCGAAGAGGCATAATTCA
388 GTATGCCTAAGTAAACCCACAAAATGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCA
* ** *
14394737 CAAGCTGAGGATCGGCCCGATCCCTTTCTGCGTGCTGTCGGT-CCAGCTA
453 CAAGCTGAGGATCGGCCCAATCCCTACCTGCGTGCTATCGGTCCCA-CTA
* * *
14394786 CCACAACCCTCGGTCC-AGCTGGGGGTTAGACATGGAATGAACTCCCTATGCCCAAGCCATCCCA
1 CCACAACCCTCGATCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCA
** * *
14394850 TGAAATGGGCGTACGGGCACTCAGTCGA-CTGGAGAGGCAGAACGCGTAAG-CTGGGGATCGACC
65 CAAAACGGGCGTACGGGCACTCAGTCGATC-GGAGAGGCAAAACGCGTAAGTC-GGGGATCGACC
* * *
14394913 CGATCCCTCCTGCGTGCTGTTGATCCTGCTGCTAGTCCTACTACCGCAACCTTCGATCTGATCCC
128 CGATCCCTCCTACGTGC---TG----T-C-G--A-TCCTACTACCGCAACCCTCGATCCGATCCC
* * *
14394978 ATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAACGAACTCCATATGCCTAAGCCAAC
181 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
*
14395043 CCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGC
246 CCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGC
* * * *
14395108 CCGATCCCCCTCTTCGTGCTGTCGATCCTGCTACCATAACCCTCGGTTTGGTCCAATCTTAGACT
311 CCGATCCCCC-CTGCGTGCTGTCGATCCTGCTACCATAACCCTCAGTTCGATCCAATCTTAGACT
* * *
14395173 AGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGCCGGCCGGA
375 AGGAATGAACTCTGTATGCCTAAGTAAACCCACAAAATGAGCGTGCGGGCACTGAGCCGGCCGAA
* *
14395238 GAGGCATAATGCGCAAG-TCGAGGATCGGCCCAATCCC-ACCTGCGTGCTATCGGTCCCACTG
440 GAGGCATAATGCACAAGCT-GAGGATCGGCCCAATCCCTACCTGCGTGCTATCGGTCCCACTA
* *
14395299 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCAC
* * * *
14395364 AAAACGGGCGTACGGGCGCTCAGTCGATCGGAGAGGCAAAATGCGTAAGTCGGGGATCGATCCGG
66 AAAACGGGCGTACGGGCACTCAGTCGATCGGAGAGGCAAAACGCGTAAGTCGGGGATCGACCCGA
* * * **
14395429 TCCCTCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
131 TCCCTCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGATCCCATCTTAGACTGGGAA
* * * * * * * *
14395494 CGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCTTATGTCAACCCATGAAACGAGTG
196 TGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
* * *
14395558 TGCAGGTGCTCAGCCAATCGGAGAGGCAGAATGCGTAAG-TCGGGGATCGGCCCGATCCCCCCTG
260 TGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCT-GGGGATCGGCCCGATCCCCCCTG
* *** * * * *** * *
14395622 CGTGCTGTCGGTCCTGCTACTGCAACCTTCAGTCCGGTTTGATCTTAGATTGGGAATGAACTCTG
324 CGTGCTGTCGATCCTGCTACCATAACCCTCAGTTCGATCCAATCTTAGACTAGGAATGAACTCTG
14395687 TATGC
389 TATGC
14395692 TTAGACTGGG
Statistics
Matches: 762, Mismatches: 117, Indels: 54
0.82 0.13 0.06
Matches are distributed among these distances:
499 1 0.00
500 80 0.10
501 236 0.31
502 5 0.01
504 2 0.00
505 1 0.00
506 1 0.00
509 1 0.00
510 3 0.00
512 1 0.00
513 289 0.38
514 142 0.19
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (501 bp):
CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCAC
AAAACGGGCGTACGGGCACTCAGTCGATCGGAGAGGCAAAACGCGTAAGTCGGGGATCGACCCGA
TCCCTCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGATCCCATCTTAGACTGGGAA
TGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCG
TGCTGTCGATCCTGCTACCATAACCCTCAGTTCGATCCAATCTTAGACTAGGAATGAACTCTGTA
TGCCTAAGTAAACCCACAAAATGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCACAA
GCTGAGGATCGGCCCAATCCCTACCTGCGTGCTATCGGTCCCACTA
Found at i:14395510 original size:26 final size:26
Alignment explanation
Indices: 14395481--14395536 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14395471 CCGGTCTGAT
14395481 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
14395507 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
14395533 CTTA
1 CTTA
14395537 TGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:14395631 original size:184 final size:184
Alignment explanation
Indices: 14395338--14395739 Score: 561
Period size: 184 Copynumber: 2.2 Consensus size: 184
14395328 ACATGGAATT
* * * * * * * * * *
14395338 AACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAGTCGATCGGAGAGGCAA
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGTGCTCAGCCAATCGGAGAGGCAA
* * *
14395403 AATGCGTAAGTCGGGGATCGATCCGGTCCCTCCTACGTGCTGTCGATCCTGCTACCGCAACCCTC
66 AATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTC
*
14395468 GGTCCGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGGATG
131 AGTCCGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGGATG
* * * *
14395522 AACTCCGTATGCTTATGTCAACCCATGAAACGAGTGTGCAGGTGCTCAGCCAATCGGAGAGGCAG
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGTGCTCAGCCAATCGGAGAGGCAA
* * * * *
14395587 AATGCGTAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGGTCCTGCTACTGCAACCTTC
66 AATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTC
* * * *
14395652 AGTCCGGTTTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATG
131 AGTCCGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGGATG
14395706 AACTCCGTATGCCTAAGTCAACCCACGAAACGAG
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAG
14395740 CATGCGGGCA
Statistics
Matches: 188, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
184 188 1.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGTGCTCAGCCAATCGGAGAGGCAA
AATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTC
AGTCCGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGGATG
Found at i:14395701 original size:26 final size:26
Alignment explanation
Indices: 14395665--14395717 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14395655 CCGGTTTGAT
* *
14395665 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14395691 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14395717 C
1 C
14395718 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14396485 original size:26 final size:26
Alignment explanation
Indices: 14396447--14396499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14396437 GGCTCAAACT
*
14396447 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14396473 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14396499 C
1 C
14396500 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14397209 original size:26 final size:26
Alignment explanation
Indices: 14397158--14397210 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14397148 CCGGTTTGAT
***
14397158 CTTAGACTGGGAATGAACTTTTTATG
1 CTTAGACTGGGAATGAACTCCATATG
14397184 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14397210 C
1 C
14397211 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14399020 original size:184 final size:181
Alignment explanation
Indices: 14398575--14399026 Score: 447
Period size: 184 Copynumber: 2.5 Consensus size: 181
14398565 TCCGGCTGGG
* *
14398575 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCTACCCACGAAACAGG-CATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACG-AA-AGGACGTGCGGGCGCTCA
* * * * * * * * * * * *
14398639 GCCGGTCGGAGAGACAGAATGCGTAAGTTGGGGATCGGCCCGACCCCCCTGTGTGCTGCTGATCC
63 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGACCGACCCCCCTGCGTACTACCGAGCC
* * * *
14398704 TACTGCCGCAACCCTTGGTCTAGTTTGATCTTAGACTGGGAATGAACTCCATAT
128 TACTGCCGCAACCCTCGATCTAGTCTGATCTTAGACTAGGAATGAACTCCATAT
*** * * * * * ** *
14398758 GCTTAGATGGGGGATTAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCAAGCGCTCTG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAAGGA-CGTGCGGGCGCTCAG
* *
14398823 CGGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGACCGATCCCCGCTGCGTACTACCGAGCC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGACCGA-CCCCCCTGCGTACTACCGAGCC
* * * * * ***
14398888 TGCTGCTGCAACCCTCGATCTGGTCTGATCTTAGATTATGAATGAACTTTGTAT
128 TACTGCCGCAACCCTCGATCTAGTCTGATCTTAGACTAGGAATGAACTCCATAT
* *
14398942 GCTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACGAAATGGACGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAA-GGACGTGCGGGCGCTCAG
*
14399007 CCGACCGGAGAGGCAGAATG
64 CCGGCCGGAGAGGCAGAATG
14399027 TGTAAACCGG
Statistics
Matches: 209, Mismatches: 55, Indels: 9
0.77 0.20 0.03
Matches are distributed among these distances:
181 2 0.01
182 3 0.01
183 78 0.37
184 124 0.59
185 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (181 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAAGGACGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGACCGACCCCCCTGCGTACTACCGAGCCTAC
TGCCGCAACCCTCGATCTAGTCTGATCTTAGACTAGGAATGAACTCCATAT
Found at i:14400129 original size:26 final size:26
Alignment explanation
Indices: 14400092--14400143 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14400082 CTGTTCCATT
* *
14400092 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGGATGAACTCCATATGC
14400118 TTAGACTAGGGATGAACTCCATATGC
1 TTAGACTAGGGATGAACTCCATATGC
14400144 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGGATGAACTCCATATGC
Found at i:14401415 original size:26 final size:26
Alignment explanation
Indices: 14401378--14401434 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14401368 CCAGTCCGAT
* * *
14401378 CTTAGACTTGGAATGAGCTTCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
14401404 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14401430 CTTAG
1 CTTAG
14401435 GCCAACCCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14401915 original size:26 final size:26
Alignment explanation
Indices: 14401879--14401931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14401869 CCGGTCCGAT
14401879 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
14401905 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14401931 C
1 C
14401932 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14402315 original size:26 final size:26
Alignment explanation
Indices: 14402279--14402331 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14402269 CTGGTTCAAT
*
14402279 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
14402305 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14402331 C
1 C
14402332 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14403322 original size:184 final size:184
Alignment explanation
Indices: 14402990--14403453 Score: 484
Period size: 184 Copynumber: 2.5 Consensus size: 184
14402980 TGGCTCAAAC
* *
14402990 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAAGTGGCATGAACTCCGTATGCCTAAGCCAACC
1 TCTTACACTAGGAATGAACTCCGTATGCTTAGAAGTGGCATGAACTCCGTATGCCTAAGCCAACC
** * * *
14403055 CACGAAACGAGCGTGCGGGCGCTCAGTCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
66 CACGAAACGAGCGTGCGGGCGCTCAACCGGTCAGAGACGCAGAATGCACAAGCCAGGGATCAGCC
* * *
14403120 CAATCCCCCTTGCATGCTGCCGATCCTACTGTCGCAACCCTCGATCCGGTTTGA
131 CAATCCCCCCTACATGCTGCCAATCCTACTGTCGCAACCCTCGATCCGGTTTGA
* * * * *
14403174 TCTTACACTAGGAATGAACTTCGTATGCTTAG-ACTGGGGATGAACTTCGTATGCCTAAGTCAAC
1 TCTTACACTAGGAATGAACTCCGTATGCTTAGAAGT-GGCATGAACTCCGTATGCCTAAGCCAAC
* * * *
14403238 CCACGAAA-GAAGCGTGCGGGCGCTCAACCGGTCGGAGACGCAGTATGCATAAGCCGGGGATCAG
65 CCACGAAACG-AGCGTGCGGGCGCTCAACCGGTCAGAGACGCAGAATGCACAAGCCAGGGATCAG
* * * * * **
14403302 CCCAGTCCCCCCTACATGCTGCCAATCCTGCTGCTGGTCTTGCTACAGCAAGCCTTGGTCTGGAC
129 CCCAATCCCCCCTACATGCTGCCAAT-C--CTACT-GTC--GC-A-A-C---CCTCGATCCGGTT
14403367 TGA
182 TGA
* * * *
14403370 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACA-TGGAATGAACTTCGTATGCCTAAGCCAAC
1 TCTTACACTAGGAATGAACTCCGTATGCTTAGA-AGTGGCATGAACTCCGTATGCCTAAGCCAAC
* *
14403434 CCATGAAACGAGCATGCGGG
65 CCACGAAACGAGCGTGCGGG
14403454 TGCACAGTCG
Statistics
Matches: 230, Mismatches: 33, Indels: 22
0.81 0.12 0.08
Matches are distributed among these distances:
183 3 0.01
184 129 0.56
185 1 0.00
187 4 0.02
188 3 0.01
190 2 0.01
191 1 0.00
192 1 0.00
193 1 0.00
196 82 0.36
197 2 0.01
198 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
TCTTACACTAGGAATGAACTCCGTATGCTTAGAAGTGGCATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAACCGGTCAGAGACGCAGAATGCACAAGCCAGGGATCAGCC
CAATCCCCCCTACATGCTGCCAATCCTACTGTCGCAACCCTCGATCCGGTTTGA
Found at i:14403409 original size:26 final size:26
Alignment explanation
Indices: 14403371--14403423 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14403361 CTGGACTGAT
14403371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14403397 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14403423 C
1 C
14403424 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14403907 original size:26 final size:26
Alignment explanation
Indices: 14403871--14403923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14403861 CCAGTCCGAT
14403871 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
14403897 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14403923 C
1 C
14403924 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14404283 original size:26 final size:26
Alignment explanation
Indices: 14404240--14404292 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14404230 CCAGTTCGAT
*
14404240 CTTAGACTGAGAACGAACTCTGTATG
1 CTTAGACTGAGAACGAACTCCGTATG
* * *
14404266 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAACGAACTCCGTATG
14404292 C
1 C
14404293 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTCCGTATG
Found at i:14404480 original size:26 final size:26
Alignment explanation
Indices: 14404442--14404494 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14404432 GGCTCAAACT
14404442 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14404468 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14404494 C
1 C
14404495 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14404814 original size:26 final size:26
Alignment explanation
Indices: 14404785--14404837 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14404775 CCGGTTCGAT
*
14404785 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
* *
14404811 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
14404837 C
1 C
14404838 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:14405409 original size:159 final size:159
Alignment explanation
Indices: 14405152--14405496 Score: 385
Period size: 159 Copynumber: 2.2 Consensus size: 159
14405142 CCGGTCCCAT
* * *
14405152 CTTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCAAC
* * * * * * *
14405217 CGGTCGGAGATGCATAATGCGCAAGCTGAGGATCGACCCAAT-CCCTCTCTGTGTGCTGTCGATC
66 CGATCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACCCAATCCCCCCT-TGCGTGCTGTCGATC
*
14405281 CTACTGCCACAACCCTCAGTCCAGCTTGGG
130 CTACTGCCACAAACCTCAGTCCAGCTTGGG
* *
14405311 CTTAGACAT-GGAATGAACTCCCTATGCCTAAG-CTAACCCACGAAACGGGCGTGT-GGGCGCTC
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTC-AACCCACGAAACGAGCGT-TCGGGCGCTC
* ** * *
14405373 AACCGATCGGAGAGGCAGAATGCCCAAGCCGGGGATCGGGCTAGTCCCCCCTTGCGTGCTGTCGA
63 AACCGATCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACCCAATCCCCCCTTGCGTGCTGTCGA
* * * * **
14405438 TCCTACTGCTACAAACCTC-GTTCTGGTCTGAC
128 TCCTACTGCCACAAACCTCAGTCCAGCT-TGGG
*
14405470 CTTAGATTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
14405497 TTAGACTGTG
Statistics
Matches: 154, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
158 7 0.05
159 140 0.91
160 7 0.05
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCAAC
CGATCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACCCAATCCCCCCTTGCGTGCTGTCGATCC
TACTGCCACAAACCTCAGTCCAGCTTGGG
Found at i:14406589 original size:26 final size:26
Alignment explanation
Indices: 14406548--14406600 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14406538 CTAATTTGAT
14406548 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
14406574 CTTAGACTTGGG-ATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
14406600 C
1 C
14406601 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14406809 original size:26 final size:26
Alignment explanation
Indices: 14406758--14406810 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14406748 CCAATCTGAT
* * *
14406758 CTTAGACTATGAATGAACTCTATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
14406784 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
14406810 C
1 C
14406811 CGAAGCCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:14407287 original size:26 final size:26
Alignment explanation
Indices: 14407258--14407310 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14407248 CCGATCCGCT
*
14407258 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14407284 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14407310 C
1 C
14407311 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14408015 original size:25 final size:26
Alignment explanation
Indices: 14407978--14408029 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
14407968 GGCTCAAACT
14407978 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
14408003 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14408029 C
1 C
14408030 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14413070 original size:16 final size:15
Alignment explanation
Indices: 14413035--14413072 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
14413025 AAAAATGTTA
14413035 GAGAAAGCTAGAAGG
1 GAGAAAGCTAGAAGG
14413050 GAGAAAGCTA-AAGAAG
1 GAGAAAGCTAGAAG--G
14413066 GAGAAAG
1 GAGAAAG
14413073 ATGAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.14
15 10 0.48
16 8 0.38
ACGTcount: A:0.53, C:0.05, G:0.37, T:0.05
Consensus pattern (15 bp):
GAGAAAGCTAGAAGG
Found at i:14418046 original size:16 final size:16
Alignment explanation
Indices: 14417946--14418046 Score: 86
Period size: 15 Copynumber: 6.4 Consensus size: 16
14417936 ATACTATGCT
14417946 TGAAAAAAATGAAAAAA
1 TGAAAAAAA-GAAAAAA
* **
14417963 --AAAAAATGATGAAA
1 TGAAAAAAAGAAAAAA
14417977 T-AAAAAAAGAGAAAAA
1 TGAAAAAAAGA-AAAAA
*
14417993 TGAAAAAATGAAAAAA
1 TGAAAAAAAGAAAAAA
*
14418009 T-AAAAAAATAAAAAAA
1 TGAAAAAAA-GAAAAAA
*
14418025 TG-AAAAAAGAAAAAG
1 TGAAAAAAAGAAAAAA
14418040 TGAAAAA
1 TGAAAAA
14418047 GGAGGACTCA
Statistics
Matches: 67, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
14 5 0.07
15 27 0.40
16 27 0.40
17 8 0.12
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.11
Consensus pattern (16 bp):
TGAAAAAAAGAAAAAA
Found at i:14418047 original size:8 final size:8
Alignment explanation
Indices: 14417949--14418046 Score: 105
Period size: 8 Copynumber: 12.6 Consensus size: 8
14417939 CTATGCTTGA
14417949 AAAAAATG
1 AAAAAATG
14417957 AAAAAA--
1 AAAAAATG
14417963 AAAAAATG
1 AAAAAATG
**
14417971 ATGAAAT-
1 AAAAAATG
*
14417978 AAAAAAAG
1 AAAAAATG
14417986 AGAAAAATG
1 A-AAAAATG
14417995 AAAAAATG
1 AAAAAATG
*
14418003 AAAAAATA
1 AAAAAATG
*
14418011 AAAAAATA
1 AAAAAATG
14418019 AAAAAATG
1 AAAAAATG
14418027 AAAAAA-G
1 AAAAAATG
*
14418034 AAAAAGTG
1 AAAAAATG
14418042 AAAAA
1 AAAAA
14418047 GGAGGACTCA
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
6 6 0.08
7 10 0.13
8 53 0.70
9 7 0.09
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:14419120 original size:41 final size:42
Alignment explanation
Indices: 14419052--14419267 Score: 328
Period size: 42 Copynumber: 5.1 Consensus size: 42
14419042 ATGATTGTCA
14419052 AGGAGCAATTTATTTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* *
14419095 AGGAGCACTTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* *
14419136 AGGAGCAGTTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* *
14419178 AGGAGCAATTTATTTTTCAAAAGTCATGGTGCCTCTATTTAG
1 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* *
14419220 AGGAGCAATTTATTTTTTC-AAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
14419262 AGGAGC
1 AGGAGC
14419268 TTTGGTTAAA
Statistics
Matches: 160, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
41 40 0.25
42 103 0.64
43 17 0.11
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
Found at i:14419309 original size:10 final size:10
Alignment explanation
Indices: 14419278--14419324 Score: 58
Period size: 10 Copynumber: 4.5 Consensus size: 10
14419268 TTTGGTTAAA
14419278 AAAAAAAAAC
1 AAAAAAAAAC
14419288 AAAACCAAAAAC
1 AAAA--AAAAAC
**
14419300 AAAAGCAAAC
1 AAAAAAAAAC
14419310 AAAAAAAAAC
1 AAAAAAAAAC
14419320 AAAAA
1 AAAAA
14419325 TATAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 21 0.68
12 10 0.32
ACGTcount: A:0.83, C:0.15, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:14419511 original size:16 final size:16
Alignment explanation
Indices: 14419489--14419528 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
14419479 GGTAAGTCCA
14419489 ATTTTATTTTTGTTATT
1 ATTTTATTTTT-TTATT
14419506 -TTTTATTTTTTTATT
1 ATTTTATTTTTTTATT
14419521 ATTTTATT
1 ATTTTATT
14419529 CTATATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (16 bp):
ATTTTATTTTTTTATT
Done.