Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 84 of 138
Found at i:14419515 original size:8 final size:8
Alignment explanation
Indices: 14419490--14419528 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
14419480 GTAAGTCCAA
14419490 TTTTATTT
1 TTTTATTT
14419498 TTGTTA-TT
1 TT-TTATTT
14419506 TTTTATTT
1 TTTTATTT
*
14419514 TTTTATTA
1 TTTTATTT
14419522 TTTTATT
1 TTTTATT
14419529 CTATATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 3 0.11
8 22 0.79
9 3 0.11
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTATTT
Found at i:14419527 original size:23 final size:23
Alignment explanation
Indices: 14419490--14419683 Score: 65
Period size: 23 Copynumber: 8.0 Consensus size: 23
14419480 GTAAGTCCAA
*
14419490 TTTTATTTTTGTTATTTTTTATTT
1 TTTTATTATT-TTATTTTTTATTT
* *
14419514 TTTTATTATTTTATTCTATATTT
1 TTTTATTATTTTATTTTTTATTT
* * *
14419537 TATGTATATATTTTCCTTTATATCCTATGT
1 T-TTTAT-TATTTT-ATTT-T-T--TATTT
* *
14419567 ATTTATTA-TTTATTTATTATTACT
1 TTTTATTATTTTATTTTTTATT--T
* *
14419591 ATTTATTAATATATATTTTTTATTT
1 TTTTATT-AT-TTTATTTTTTATTT
14419616 TTATT-TTA-TTTATTTTTGTATTT
1 TT-TTATTATTTTATTTTT-TATTT
* * * * * *
14419639 TTAT-TTATCTAATTATATA-TC
1 TTTTATTATTTTATTTTTTATTT
*
14419660 TGTTATTATTATTATTTTTTATTT
1 TTTTATTATT-TTATTTTTTATTT
14419684 ATCCTATAAT
Statistics
Matches: 122, Mismatches: 30, Indels: 36
0.65 0.16 0.19
Matches are distributed among these distances:
21 3 0.02
22 21 0.17
23 31 0.25
24 24 0.20
25 11 0.09
26 7 0.06
27 15 0.12
28 2 0.02
29 4 0.03
30 4 0.03
ACGTcount: A:0.24, C:0.04, G:0.03, T:0.70
Consensus pattern (23 bp):
TTTTATTATTTTATTTTTTATTT
Found at i:14419548 original size:13 final size:12
Alignment explanation
Indices: 14419509--14419550 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
14419499 TGTTATTTTT
*
14419509 TATTTTTTTAT-
1 TATTTTATTATA
*
14419520 TATTTTATTCTA
1 TATTTTATTATA
14419532 TATTTTATGTATA
1 TATTTTAT-TATA
14419545 TATTTT
1 TATTTT
14419551 CCTTTATATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 9 0.35
12 8 0.31
13 9 0.35
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (12 bp):
TATTTTATTATA
Found at i:14419595 original size:17 final size:16
Alignment explanation
Indices: 14419573--14419682 Score: 68
Period size: 18 Copynumber: 6.8 Consensus size: 16
14419563 ATGTATTTAT
14419573 TATTTATTTATTATTA
1 TATTTATTTATTATTA
*
14419589 CTATTTA-TTAATA-TA
1 -TATTTATTTATTATTA
*
14419604 TATTT-TTTATTTTTA
1 TATTTATTTATTATTA
*
14419619 T-TTTATTTATTTTTGTA
1 TATTTATTTA-TTAT-TA
*
14419636 TTTTTATTTATCTAATTA
1 TATTTATTTAT-T-ATTA
* *
14419654 TATATCTGTTATTATTA
1 TATTTAT-TTATTATTA
14419671 TTATTT-TTTATT
1 -TATTTATTTATT
14419683 TATCCTATAA
Statistics
Matches: 75, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
14 12 0.16
15 9 0.12
16 14 0.19
17 15 0.20
18 20 0.27
19 5 0.07
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (16 bp):
TATTTATTTATTATTA
Found at i:14419685 original size:14 final size:14
Alignment explanation
Indices: 14419566--14419685 Score: 58
Period size: 14 Copynumber: 8.5 Consensus size: 14
14419556 ATATCCTATG
14419566 TATTTATTATTTATT
1 TATTTATTATTT-TT
* *
14419581 TA-TTATTACTATT
1 TATTTATTATTTTT
14419594 TATTAATATATATTTTT
1 TATT--TAT-TATTTTT
14419611 TATTT-TTA--TTT
1 TATTTATTATTTTT
*
14419622 TATTTA-T-TTTTG
1 TATTTATTATTTTT
*
14419634 TATTT-TTATTTATC
1 TATTTATTATTT-TT
*
14419648 TAATTATATATCTGTTAT
1 TATTTAT-TAT-T-TT-T
14419666 TA-TTATTATTTTT
1 TATTTATTATTTTT
14419679 TATTTAT
1 TATTTAT
14419686 CCTATAATAT
Statistics
Matches: 81, Mismatches: 8, Indels: 33
0.66 0.07 0.27
Matches are distributed among these distances:
11 9 0.11
12 8 0.10
13 12 0.15
14 20 0.25
15 5 0.06
16 9 0.11
17 15 0.19
18 3 0.04
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.69
Consensus pattern (14 bp):
TATTTATTATTTTT
Found at i:14420574 original size:15 final size:14
Alignment explanation
Indices: 14420553--14420595 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
14420543 GCCGCTCCAG
14420553 TTTTTTTTTTATTA
1 TTTTTTTTTTATTA
*
14420567 TGTTTTTTTTATTTA
1 TTTTTTTTTTA-TTA
*
14420582 TTTTTTATTTATTA
1 TTTTTTTTTTATTA
14420596 GATTAGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.81
Consensus pattern (14 bp):
TTTTTTTTTTATTA
Found at i:14420665 original size:15 final size:15
Alignment explanation
Indices: 14420647--14420686 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
14420637 TTTATCTTGG
14420647 TTTTACTTTTCTTTA
1 TTTTACTTTTCTTTA
*
14420662 TTTTA-TTTTTTTTA
1 TTTTACTTTTCTTTA
14420676 TTTTCACTTTT
1 TTTT-ACTTTT
14420687 ATTTTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 12 0.55
15 6 0.27
16 4 0.18
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTACTTTTCTTTA
Found at i:14420666 original size:5 final size:5
Alignment explanation
Indices: 14420658--14420709 Score: 56
Period size: 5 Copynumber: 10.6 Consensus size: 5
14420648 TTTACTTTTC
*
14420658 TTTAT TTTAT TTT-T TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT
14420707 TTT
1 TTT
14420710 CTTTAAATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
3 3 0.08
4 4 0.10
5 27 0.68
6 2 0.05
7 4 0.10
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:14420674 original size:18 final size:18
Alignment explanation
Indices: 14420624--14420709 Score: 54
Period size: 18 Copynumber: 4.8 Consensus size: 18
14420614 TCCTTTTTAC
*
14420624 CTTTATTTTATTTTTTAT
1 CTTTATTTTATTTTTTTT
** *
14420642 CTTGGTTTTA---CTTTT
1 CTTTATTTTATTTTTTTT
14420657 CTTTATTTTATTTTTTTT
1 CTTTATTTTATTTTTTTT
*
14420675 ATTTTCACTTTTATTTTGTTTT
1 -CTTT-A-TTTTATTTT-TTTT
*
14420697 -ATTATTTTATTTT
1 CTTTATTTTATTTT
14420710 CTTTAAATAA
Statistics
Matches: 52, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
15 11 0.21
18 21 0.40
19 4 0.08
20 3 0.06
21 9 0.17
22 4 0.08
ACGTcount: A:0.14, C:0.07, G:0.03, T:0.76
Consensus pattern (18 bp):
CTTTATTTTATTTTTTTT
Found at i:14420791 original size:60 final size:59
Alignment explanation
Indices: 14420725--14421006 Score: 381
Period size: 60 Copynumber: 4.7 Consensus size: 59
14420715 AATAAAAATA
*
14420725 AAAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** * * *
14420785 AAAAAAGGGTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** *
14420845 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAAGTATCAATTTTCCTTGAAAATAAAAGTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTG-AAAGTATCAATTTTCCTTAAAAATAAAA-TTTC
* * *
14420906 --CAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
14420963 -AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
14421007 CTGCACAAAA
Statistics
Matches: 196, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
57 4 0.02
58 32 0.16
59 37 0.19
60 119 0.61
61 4 0.02
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.34
Consensus pattern (59 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:14420953 original size:118 final size:117
Alignment explanation
Indices: 14420735--14421006 Score: 413
Period size: 118 Copynumber: 2.3 Consensus size: 117
14420725 AAAAAAGAAT
* *
14420735 ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAGGGTTTTTT
1 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA--GTATTTT
*
14420800 TTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA-A
64 TGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAACA
* * *
14420853 GGTTTTTGAGGAAAAGTTGAAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCCAAAAA-TATTT
1 -ATTTTTGAGGAAAAGTTG-AAAGTATCAATTTTCCTTAAAAATAAAA-TTTCAAAAAAGTATTT
*
14420917 TTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATCA
63 TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA-CA
14420973 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
1 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
14421007 CTGCACAAAA
Statistics
Matches: 141, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
118 71 0.50
119 33 0.23
120 28 0.20
121 9 0.06
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (117 bp):
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAGTATTTTTG
AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAACA
Found at i:14422243 original size:26 final size:26
Alignment explanation
Indices: 14422207--14422259 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14422197 GGCTCAAACT
*
14422207 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14422233 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14422259 C
1 C
14422260 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14422644 original size:196 final size:197
Alignment explanation
Indices: 14422309--14422752 Score: 665
Period size: 196 Copynumber: 2.3 Consensus size: 197
14422299 GGCTAGAGAG
* * * * * * *
14422309 GTCGATCGGAGAGGCAGAATGCGTAATCCGAGGATCAGCCCGGTCCCCCCTTGCATGCTATCAAT
1 GTCGATCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTACATGCTATCAAT
* * *
14422374 CCTGCTACTGGTCTTGCTACCGTAACTCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCG
66 CCTGCTACTGGTCTTGCTACCGTAACTCTCAATCCGGTCCGATCTTAGACTGAGAATGAACTCCA
* * *
14422439 TATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACT
131 TATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACT
14422504 CA
196 CA
* * *
14422506 GTCGATCGGAGAGCCAGAATGTGCAAGCCGGGGATCGGCCCGATCCTCTC-TACATGCTATCAAT
1 GTCGATCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTACATGCTATCAAT
* *
14422570 CCTGCTGCTGGTCTTGCTACCGTAACTCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCA
66 CCTGCTACTGGTCTTGCTACCGTAACTCTCAATCCGGTCCGATCTTAGACTGAGAATGAACTCCA
14422635 TATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACT
131 TATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACT
*
14422700 TA
196 CA
* ** * *
14422702 GTCGACCGGAGAGCCAGAATGCGCAAGCTAGGGATCGACTCGATCCCCCCT
1 GTCGATCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCT
14422753 GTGTGCTGTC
Statistics
Matches: 219, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
196 178 0.81
197 41 0.19
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (197 bp):
GTCGATCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTACATGCTATCAAT
CCTGCTACTGGTCTTGCTACCGTAACTCTCAATCCGGTCCGATCTTAGACTGAGAATGAACTCCA
TATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACT
CA
Found at i:14422651 original size:26 final size:26
Alignment explanation
Indices: 14422613--14422665 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14422603 CCGGTCCGAT
**
14422613 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
14422639 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
14422665 C
1 C
14422666 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:14423155 original size:26 final size:26
Alignment explanation
Indices: 14423114--14423166 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14423104 CTGGTTTGAT
* *
14423114 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTACGTATG
*
14423140 CTTAGACCAGGGATGAACTACGTATG
1 CTTAGACCAGGAATGAACTACGTATG
14423166 C
1 C
14423167 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTACGTATG
Found at i:14424090 original size:26 final size:26
Alignment explanation
Indices: 14424054--14424106 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14424044 TTGGTCTGAT
14424054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14424080 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14424106 C
1 C
14424107 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14424293 original size:26 final size:26
Alignment explanation
Indices: 14424264--14424316 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14424254 CCGATCCGAT
**
14424264 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
* *
14424290 CTTAGACAAGGAATGAAGTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
14424316 C
1 C
14424317 CTAAACCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:14424684 original size:159 final size:157
Alignment explanation
Indices: 14424415--14424723 Score: 361
Period size: 159 Copynumber: 2.0 Consensus size: 157
14424405 CTGGCCCGAT
* * ** * ** * *
14424415 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGCGCTGAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
* * * *
14424480 CGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTTTACGTGCTGTCGGTCC
66 AGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGAT-CCCC-TTACGTGCTGTCGATCC
*
14424545 CGCTGCCACAACCCTCGGTCCGACTGGGG
129 CGCTACCACAACCCTCGGTCCGACTGGGG
*
14424574 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG-
* * * * * *
14424639 CAG-CC-AGAGAGGCAGAATGTGCAAGCCGGGGATTGACTCGGTCCCCTTGCGTGCTGTTGATCC
65 CAGACCGA-AGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCCTTACGTGCTGTCGATCC
* *
14424702 TGCTACCGCAACCCTCGGTCCG
129 CGCTACCACAACCCTCGGTCCG
14424724 GTCCGATCTT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 33 0.26
158 5 0.04
159 85 0.68
160 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
AGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCCTTACGTGCTGTCGATCCCG
CTACCACAACCCTCGGTCCGACTGGGG
Found at i:14424767 original size:26 final size:26
Alignment explanation
Indices: 14424731--14424783 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14424721 CCGGTCCGAT
* *
14424731 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14424757 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14424783 C
1 C
14424784 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14425491 original size:26 final size:26
Alignment explanation
Indices: 14425453--14425505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14425443 GGCTTAAACT
*
14425453 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14425479 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14425505 C
1 C
14425506 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14426426 original size:158 final size:158
Alignment explanation
Indices: 14425924--14427048 Score: 965
Period size: 158 Copynumber: 7.1 Consensus size: 158
14425914 CTTAGACATT
* * * * * * **
14425924 GAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGTGTGCGGGTGCTCAGCC-AGCCAAAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGGAG
* * * * * * * * *
14425988 AGGCAGAATGCGTAAGCCAGGGATTGGCCCAGTCCCCCCTGCGTGCTGTCGATCATGCTGTCGCA
65 AGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACA
14426053 ACCCTCGGT-TCGGTCCGATCTTAGACTGG
130 ACCCTCGGTCT-GGTCCGATCTTAGACTGG
* * * * * * * *
14426082 GAATGAACTCCGTATGGCTAAGTCAACCCACAAAACGAGCGTTCAGGTGCTGAGTCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
** * * * * * *
14426147 GGCAAAATGCGCAAGCTAGGGATCGACCCGGTCCCCCTCTGTGTGCTGCCGGT-CTCGCTACCAC
66 GGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCT-ACTGCCAC
* * **
14426211 AACCCTCGGTCCGG-CTGGGGCTTAGACAT-G
129 AACCCTCGGTCTGGTC-CGATCTTAGAC-TGG
* * *
14426241 GAATGAACTACC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGACCGGAG
1 GAATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * ** *
14426305 AGGCAGAATGCGCAAGCTGGGGATTGGCATGGTCCCCCCTGCGTGCTATCGATCCTACTGCCACA
65 AGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACA
*
14426370 ACCCTCGGTCTAGTCCGATCTTAGACTGG
130 ACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * * * *
14426399 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGAGTGCGGGCGCTCAACTGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
* * * * * *
14426464 GGCAGAATGCACAAGTCGGGGA-CTGGCCCGATTCCCCCTACGTGCTGTCGATCCTACTGCCACA
66 GGCAAAATGCGCAAGCCGGGGATC-GGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACA
** * ** *
14426528 ACCCTTAGTCTGATCAAATCTTAGATTGG
130 ACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * ** * * *
14426557 GAATGAACTTCGTATGCCAAAGTCAACCCACGAAACGAGTGTTAGGGCGTTGAGCTGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
* * * * ** * ** *
14426622 GCCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTACCGGTCCCGCTGTCACA
66 GGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTACTGCCACA
* ** **
14426687 ACCCTCGGTCCGGTTGGGGCTTAGACAT-G
130 ACCCTCGGTCTGGTCCGATCTTAGAC-TGG
* * * * * * **
14426716 GAATGAAGTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGTGCTCAGCCAATAGGAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGACCGGAG
** * * * ** *
14426780 AGGCAAAATAAGCAAGCCGAGGATCGACCCGGTCCCCCCTGTGTGCTG-CTGATCCTACTATCGC
65 AGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-GATCCTACTGCCAC
* * * *
14426844 AACCCTCGATCCGATCTGATCTTAGACTGG
129 AACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * * * * *
14426874 GAATGAACTCTGTATGTCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCCGATCGGAAA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
* * * * * *
14426939 GGCAAAATGCGCAAGCCGGGGATCGACTCGATCCCCCTTGCGTGCTGTCAATCCTACTGCCATAA
66 GGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAA
*
14427004 CCCTCGGTCCGGTCCGATCTTAGACTGG
131 CCCTCGGTCTGGTCCGATCTTAGACTGG
*
14427032 GAATGAACTTCGTATGC
1 GAATGAACTCCGTATGC
14427049 TTAGACTGGG
Statistics
Matches: 764, Mismatches: 183, Indels: 40
0.77 0.19 0.04
Matches are distributed among these distances:
157 5 0.01
158 515 0.67
159 240 0.31
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
GGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAA
CCCTCGGTCTGGTCCGATCTTAGACTGG
Found at i:14426816 original size:475 final size:474
Alignment explanation
Indices: 14425924--14427048 Score: 1332
Period size: 475 Copynumber: 2.4 Consensus size: 474
14425914 CTTAGACATT
* * ** * * * **
14425924 GAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGTGTGCGGGTGCTCAGCCAGCCAAAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGAGTGCGGGCGCTCAGCCGGCCGGAGA
* * * * * * *
14425989 GGCAGAATGCGTAAGCCAGGGATTGGCCC-AGTCCCCCCTGCGTGCTGTCGATCATGCTGTCGCA
66 GGCAGAATGCGCAAGCCGGGGA-TGGCCCGA-TTCCCCCTGCGTGCTGTCGATCCTACTGCCACA
* * *
14426053 ACCCTCGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACAAAA
129 ACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCAAAGTCAACCCACAAAA
* * *
14426117 CGAGCGTTCAGGTGCTGAGTCGATCGGAGAGGCAAAATGCGCAAGCTAGGGATCGACCCGGTCCC
193 CGAGCGTTCAGGTGCTGAGTCGACCGGAGAGCCAAAATGCGCAAGCCAGGGATCGACCCGGTCCC
** * *
14426182 CCTCTGTGTGCTGCCGGTCTCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGA
258 CCTCTGCATGCTACCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGA
* * * *
14426247 ACTACCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGA
323 ACTACCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAACCAACAGGAGAGGCAAA
** * * * * * * *
14426312 ATGCGCAAGCTGGGGATTGGCATGGTCCCCCCTGCGTGCT-ATCGATCCTACTGCCACAACCCTC
388 ATAAGCAAGCCGAGGATCGACACGGTCCCCCCTGCGTGCTGCT-GATCCTACTACCACAACCCTC
*
14426376 GGTCTAG-TCCGATCTTAGACTGG
452 GATC-AGATCCGATCTTAGACTGG
* *
14426399 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGAGTGCGGGCGCTCAACTGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGAGTGCGGGCGCTCAGCCGGCCGGAGA
* * *
14426464 GGCAGAATGCACAAGTCGGGGACTGGCCCGATTCCCCCTACGTGCTGTCGATCCTACTGCCACAA
66 GGCAGAATGCGCAAGCCGGGGA-TGGCCCGATTCCCCCTGCGTGCTGTCGATCCTACTGCCACAA
** * ** * *
14426529 CCCTTAGTCTGATCAAATCTTAGATTGGGAATGAACTTCGTATGCCAAAGTCAACCCACGAAACG
130 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCAAAGTCAACCCACAAAACG
* * *
14426594 AGTGTT-AGG-GCGTTGAG-CTGACCGGAGAGCCATAATGCGCAAGCCAGGGATCGGCCCGGTCC
195 AGCGTTCAGGTGC--TGAGTC-GACCGGAGAGCCAAAATGCGCAAGCCAGGGATCGACCCGGTCC
** *
14426656 CCCTCTGCATGCTACCGGTCCCGCTGTCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATG
257 CCCTCTGCATGCTACCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATG
* * * * * *
14426721 AAGTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGTGCTCAGCCAATAGGAGAGGCAA
322 AACTACCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAACCAACAGGAGAGGCAA
* * * *
14426786 AATAAGCAAGCCGAGGATCGACCCGGTCCCCCCTGTGTGCTGCTGATCCTACTATCGCAACCCTC
387 AATAAGCAAGCCGAGGATCGACACGGTCCCCCCTGCGTGCTGCTGATCCTACTACCACAACCCTC
* *
14426851 GATCCGATCTGATCTTAGACTGG
452 GATCAGATCCGATCTTAGACTGG
* * * * ** *
14426874 GAATGAACTCTGTATGTCTAAGTCAACCCATGAAACGAGCA-TACGGGCGCTCAGCCGATCGGAA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG-AGTGCGGGCGCTCAGCCGGCCGGAG
* * * * *
14426938 AGGCAAAATGCGCAAGCCGGGGATCGACTCGA-TCCCCCTTGCGTGCTGTCAATCCTACTGCCAT
65 AGGCAGAATGCGCAAGCCGGGGAT-GGCCCGATTCCCCC-TGCGTGCTGTCGATCCTACTGCCAC
*
14427002 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
128 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
14427049 TTAGACTGGG
Statistics
Matches: 545, Mismatches: 95, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
473 2 0.00
474 12 0.02
475 527 0.97
476 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (474 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGAGTGCGGGCGCTCAGCCGGCCGGAGA
GGCAGAATGCGCAAGCCGGGGATGGCCCGATTCCCCCTGCGTGCTGTCGATCCTACTGCCACAAC
CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCAAAGTCAACCCACAAAACGA
GCGTTCAGGTGCTGAGTCGACCGGAGAGCCAAAATGCGCAAGCCAGGGATCGACCCGGTCCCCCT
CTGCATGCTACCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT
ACCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAACCAACAGGAGAGGCAAAATA
AGCAAGCCGAGGATCGACACGGTCCCCCCTGCGTGCTGCTGATCCTACTACCACAACCCTCGATC
AGATCCGATCTTAGACTGG
Found at i:14426836 original size:317 final size:316
Alignment explanation
Indices: 14425924--14427040 Score: 752
Period size: 317 Copynumber: 3.5 Consensus size: 316
14425914 CTTAGACATT
* * * * * * * * * **
14425924 GAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGTGTGCGGGTGCTCAGCC-AGCCAAAG
1 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAACCGA-CCGGAG
* * * * * * ** *** * *
14425988 AGGCAGAATGCGTAAGCCAGGGATTGGCCCAGTCCCCCCTGCGTGCTGTCGATCATGCTGTCGCA
65 AGCCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCCTGCATGCTACCGATCCCACTGCCACA
* * * * * * **
14426053 ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACAAAAC
130 ACCCTCGGTCCAGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
* * * * * * * * ** * *
14426118 GAGCGTTCAGGTGCTGAGTCGATC-GGAGAGGCAAAATGCGCAAG-CTAGGGA-TCGACCCGGTC
195 GAGAGTGCGGGCGCTCA-ACCAACAGGAGAGGCAAAATGAACAAGCCGA-GGACT-GACCCGATC
** * * * * * * ****
14426180 CCCCTCTGTGTGCTGCCGGT-CTCGCTACCACAACCCTCGGTCCG-GCTGGGGCTTAGACAT-G
257 CCCC-CTACGTGCTGTCGATCCT-ACTACCACAACCCTAGATCCGATC-AAATCTTAGAC-TGG
* * * * *
14426241 GAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGACCGGAGA
1 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAACCGACCGGAGA
* ** * * * * *
14426306 GGCAGAATGCGCAAGCTGGGGATTGGCATGGTCCCCCCTGCGTGCTATCGATCCTACTGCCACAA
66 GCCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCCTGCATGCTACCGATCCCACTGCCACAA
* * * * *
14426371 CCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
131 CCCTCGGTCCAGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
*** * * * * * * *
14426436 AGAGTGCGGGCGCTCAACTGGCCGGAGAGGCAGAATGCACAAGTCGGGGACTGGCCCGATTCCCC
196 AGAGTGCGGGCGCTCAACCAACAGGAGAGGCAAAATGAACAAGCCGAGGACTGACCCGATCCCCC
* * *
14426501 CTACGTGCTGTCGATCCTACTGCCACAACCCTTAG-TCTGATCAAATCTTAGATTGG
261 CTACGTGCTGTCGATCCTACTACCACAACCC-TAGATCCGATCAAATCTTAGACTGG
* * * * * * *
14426557 GAATGAACTTCGTATGCCAAAGTCAACCCACGAAACGAGTGTTAGGGCGTTGAGCTGACCGGAGA
1 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAACCGACCGGAGA
* * * * *
14426622 GCCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTACCGGTCCCGCTGTCACA
66 GCCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCC-CTGCATGCTACCGATCCCACTGCCACA
* ** * *
14426687 ACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAAGTCCCTATGCCTAAGCCAACCCATGAAA
130 ACCCTCGGTCCAGTCCGAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * *
14426751 CG-GACGTGCGGGTGCTCAGCCAATAGGAGAGGCAAAAT-AAGCAAGCCGAGGA-TCGACCCGGT
194 CGAGA-GTGCGGGCGCTCAACCAACAGGAGAGGCAAAATGAA-CAAGCCGAGGACT-GACCCGAT
** * * * **
14426813 CCCCCCTGTGTGCTG-CTGATCCTACTATCGCAACCCTCGATCCGATCTGATCTTAGACTGG
256 CCCCCCTACGTGCTGTC-GATCCTACTACCACAACCCTAGATCCGATCAAATCTTAGACTGG
* * * * *
14426874 GAATGAAC-TCTGTATGTCTAAGTCAACCCATGAAACGAGCAT-ACGGGCGCTCAGCCGATCGGA
1 GAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGA-GGGCGCTCAACCGACCGGA
* * * * * * * * * ** * * *
14426937 AAGGCAAAATGCGCAAGCCGGGGATCGACTCGATCCCCCTTGCGTGCTGTCAATCCTACTGCCAT
64 GAGCCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCCTGCATGCTACCGATCCCACTGCCAC
* *
14427002 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
129 AACCCTCGGTCCAGTCCGAGCTTAGACTGGGAATGAACT
14427041 TCGTATGCTT
Statistics
Matches: 633, Mismatches: 149, Indels: 37
0.77 0.18 0.05
Matches are distributed among these distances:
315 2 0.00
316 175 0.28
317 452 0.71
318 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAACCGACCGGAGA
GCCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCCTGCATGCTACCGATCCCACTGCCACAA
CCCTCGGTCCAGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
AGAGTGCGGGCGCTCAACCAACAGGAGAGGCAAAATGAACAAGCCGAGGACTGACCCGATCCCCC
CTACGTGCTGTCGATCCTACTACCACAACCCTAGATCCGATCAAATCTTAGACTGG
Found at i:14427058 original size:26 final size:26
Alignment explanation
Indices: 14427022--14427074 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14427012 CCGGTCCGAT
* *
14427022 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14427048 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14427074 C
1 C
14427075 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14427780 original size:26 final size:26
Alignment explanation
Indices: 14427742--14427820 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
14427732 GGCCCAAAAT
*
14427742 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14427768 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
14427794 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14427820 C
1 C
14427821 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14428165 original size:159 final size:157
Alignment explanation
Indices: 14427793--14428186 Score: 353
Period size: 158 Copynumber: 2.5 Consensus size: 157
14427783 AACTCCGTAT
* * **
14427793 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA-GAAACGAGTGTGCGGGCACTCAG
* * * ** *
14427858 CCGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCTACGTGCTGTCAATCC
65 CCGACCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCAATCCCCCCTACGTGCTGTCAATCC
* ** * *
14427923 TGCTGCTGCAACTCTCAGTCCGGTCTAA
130 CGCTGCCACAACGCTCAGTCCGGACTAA
* * * * * *
14427951 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAAATCCC-GAAATGAGCGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CCAA-CCCAGAAACGAGTGTGCGGGCACTC
* * * ** ** *
14428014 AGCCGACCGAAGAGGCATAATGCATAAGCCAGGGATCGACTCGGTCCCCCTCTGTGTGCTGTCAG
63 AGCCGACCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCAATCCCCC-CTACGTGCTGTCAA
* **
14428079 TCCCGCTGCCACAACGCTCAGT-CTGACTGGG
127 TCCCGCTGCCACAACGCTCAGTCCGGACT-AA
* * * * *
14428110 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGGGTGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA-GAAACGAGTGTGCGGGCACTCAG
* *
14428175 CCGGCCAAAGAG
65 CCGACCGAAGAG
14428187 ACAGAACGTG
Statistics
Matches: 183, Mismatches: 45, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 89 0.49
159 86 0.47
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAGAAACGAGTGTGCGGGCACTCAGC
CGACCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCAATCCCCCCTACGTGCTGTCAATCCC
GCTGCCACAACGCTCAGTCCGGACTAA
Found at i:14429067 original size:158 final size:158
Alignment explanation
Indices: 14428660--14429077 Score: 414
Period size: 158 Copynumber: 2.6 Consensus size: 158
14428650 GAACTCTGTA
* * *
14428660 AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGAGCGCTCA
1 AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
14428725 GCCGACCAGAGAGGTAGAATGCGTAAGTCAGGGATCGGCCATGTCCCCCTTGCGTACTGTCGATC
66 GCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCAGGTCCCCCTTGCGTACTGCCGATC
** ** * *
14428790 CTGCTGTCGCAACCCTCGGTCTGGATTG
131 CCACTACCACAACCCTCGGTCTGGATAG
* * * * * * *
14428818 ATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGTGCTA
1 AGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
14428882 AGCCGACCGAAGAGGCATATTGTGCAAGAT-AGGGATCGACTC-GGTCCACCTTTGCGTGCTGCC
65 AGCCGACCGGAGAGGCAGAATGCGCAAG-TCAGGGATCGAC-CAGGTCC-CCCTTGCGTACTGCC
*
14428945 GATCCCACTACCACAACCCTC-GTCTGGCTAG
127 GATCCCACTACCACAACCCTCGGTCTGGATAG
* * * * * *
14428976 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCACTCA
1 AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
14429041 GCC-AGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
66 GCCGA-CCGGAGAGGCAGAATGCGCAAGTCAGGGATCG
14429078 GCATGGTCCC
Statistics
Matches: 204, Mismatches: 49, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 171 0.84
159 31 0.15
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCAGGTCCCCCTTGCGTACTGCCGATC
CCACTACCACAACCCTCGGTCTGGATAG
Found at i:14429546 original size:26 final size:26
Alignment explanation
Indices: 14429503--14429555 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14429493 TCGGTCCGAT
*
14429503 CTTAGACAGGGAACGAACTCTGTATG
1 CTTAGACAGGGAACGAACTCCGTATG
** *
14429529 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACAGGGAACGAACTCCGTATG
14429555 C
1 C
14429556 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAACGAACTCCGTATG
Found at i:14429765 original size:867 final size:867
Alignment explanation
Indices: 14427768--14429975 Score: 2505
Period size: 868 Copynumber: 2.5 Consensus size: 867
14427758 ACTTCGTATG
* *
14427768 CTTAGACATGGAATGAACTCCGTATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACAGGGAATGAACTCTGTATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
14427833 ACGAAACGAGTGTGCGGGTGCTCAGCCG-GCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGAG-CGGAGAGGCAGAATGCGCTAGCTGAGGATCGGCC
* * * * * * * *
14427897 CAATCCCCCCTACGTGCTGTCAATCCTGCTGCTGCAACTCTCAGTCCGGTCTAATCTTAGACTGG
130 CAGTCCCCCTTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGG
** * * *
14427962 GAATGAACTCCATATGCATAAGTCAAATCC-CGAAATGAGCGTGCGGGCACTGAGCCGACCGAAG
195 GAATGAACTCTGTATGCCTAAGTC-AACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGAAG
* * * * *
14428026 AGGCATAATGCATAAGCCAGGGATCGACTCGGTCCCCCTCTGTGTGCTGTC-AGTCCCGCTGCCA
259 AGGCATATTGCACAAGCCAGGGATCGACTCGGT-CCCCTTTGCGTGCTGCCGA-TCCCGCTGCCA
* * *
14428090 CAACGCTCAGTCTGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAA
322 CAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * ** * * * *
14428155 ACGGGTGTGCGGACGCTCAGCCGGCCAAAGAGACAGAACGTGCAAGCCGGGGATCGGCCCGGTCC
387 ACGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGGTCC
* * * * *
14428220 CCTTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGATATGATCTTAGACTGAGAATGAA
452 CCCTACGTGCTGTCGATCCTACTGTCGCAACACTCGGTCCGATACGATCTTAGACTGAGAATGAA
* * * *
14428285 CTCCATATGCTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCACAAAACGATCGTACGG
517 CTCCATATGCTTAGACTAGGGATGAACTCTGTATACCTAAGTCAACCCACAAAACGAGCATACGA
* * * * * *
14428350 GAGCTCAGCCAACCGGAGAGGCATAATACGCAAGCCGGGGATCAGTCCGGTCCCCTTCTACATGC
582 GAGCTAAGCCAACCGGAAAGGCATAATACGCAAGACGGGGATCAGTCCGATCCCCTTCCACACGC
* * **** * * *
14428415 TACCGATCCCGCTGCCGATCCTGCTACCACAACCCTCGGTTTGGCTAGGTCTTAGACATGGAATG
647 TACCGATCCCGCTCCCGATCCTACTACCACAACCCTCGGTCCAACTAGGGCTGAGACATGGAAAG
* * **
14428480 AACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAACCGATTGGAGAGGCAG
712 AACTTCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAG
*** * * * ** *
14428545 AATGCACAAGCCAGGGATTGGCCCGGTTCCCCCCTGTGTATTACCGATCTTGTTGCTGGTCTTGC
777 AATGCACAAGCCAGGGATCAACCCGGTTCCCCCCTGCGTACTACCGATCCTACTGCTGGTCCTGC
* *
14428610 TACCGCAACCCTCGATCCGGTCTAAT
842 TACCGCAACCCTAGATCCGGTCCAAT
* * * *
14428636 CTTAGACTGGGAATGAACTCTGTAAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCC
1 CTTAGACAGGGAATGAACTCTGTATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * *
14428701 ATGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGTAGAATGCG-TAAG-TCAGGGATCGG-
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGAGCGGAGAGGCAGAATGCGCT-AGCTGA-GGATCGGC
* *
14428763 CCATGTCCCCCTTGCGTACTGTCGATCCTGCTG-TCGCAACCCTCGGTCTGGAT-TGATCTTAGA
129 CCA-GTCCCCCTTGCGTGCTGTCGATCCTGCTGCT-GCAACCCTCGGTC-CGATCTGATCTTAGA
** * * *
14428826 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGTGCTAAGCCGACCG
191 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCG
** ** * *
14428891 AAGAGGCATATTGTGCAAGATAGGGATCGACTCGGTCCACCTTTGCGTGCTGCCGATCCCACTAC
256 AAGAGGCATATTGCACAAGCCAGGGATCGACTCGGTCC-CCTTTGCGTGCTGCCGATCCCGCTGC
* *
14428956 CACAACCCTC-GTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
320 CACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * *
14429020 AAATGGGCATGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCATGGT
385 AAACGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGGT
* * *
14429085 CCCCCCTACGTGCTGT-GAATCCTGCTG-CTGCAACACTCGGTCCGGTCCGATCTTAGACT-AGG
450 -CCCCCTACGTGCTGTCG-ATCCTACTGTC-GCAACACTCGGTCCGATACGATCTTAGACTGA-G
* * *
14429147 AATGAACTCCATATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGC
511 AATGAACTCCATATGCTTAGACTAGGGATGAACTCTGTATACCTAAGTCAACCCACAAAACGAGC
* * * *** * * *
14429212 ATGCGAGCGCTAAGTCGGTCGGAAAGGTATAATGCGTAAGACGGGGATCAG-CCTGATCCGCC-T
576 ATACGAGAGCTAAGCCAACCGGAAAGGCATAATACGCAAGACGGGGATCAGTCC-GATCC-CCTT
* * * * *
14429275 CCGCGCGCTACCGATCCCGCTCCCGATTCTACTGCCACAACCCTCGGTCCAACTGGGGCTGAGAC
639 CCACACGCTACCGATCCCGCTCCCGATCCTACTACCACAACCCTCGGTCCAACTAGGGCTGAGAC
* *
14429340 ATGGAAAGAAC-TCTATATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGCGCTCAACCGACCG
704 ATGGAAAGAACTTC-ATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCG
* * * * *
14429404 GAGAGGTAGAATGCGCAAGCCGGGGATCAACTCGG-TCACCCCCTGCGTGCTACCGATCCTACTG
768 GAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTTC-CCCCCTGCGTACTACCGATCCTACTG
** *
14429468 CTGGTCCTGCTGTCGCAACCCTTAG-T-CGGTCCGAT
832 CTGGTCCTGCTACCGCAACCC-TAGATCCGGTCCAAT
*
14429503 CTTAGACAGGGAACGAACTCTGTATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACAGGGAATGAACTCTGTATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCC
*** *
14429568 ACGAAACGAGCGTGCGGGCGCTCAATTGAGCGGAGAGACAGAATGCGCTAGCTGAGGATCGGCCC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGAGCGGAGAGGCAGAATGCGCTAGCTGAGGATCGGCCC
* * * * *
14429633 GGTCCCCCTTGTGTGCTGTCGATCCTGCTGCTACAACCCTTGGTCCGATCCGATCTTAGACTGGG
131 AGTCCCCCTTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGG
* * * *
14429698 AATGAACTATGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCGCTGAGCCGACCGGAGAG
196 AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGAAGAG
* * * * * * *
14429763 GCATATTGCACAAGCCGGGGGTC-AGCTCGAT-CCCTTCT-CTGAGCTACCGATCTCGTTGCCAC
261 GCATATTGCACAAGCCAGGGATCGA-CTCGGTCCCCTT-TGC-GTGCTGCCGATCCCGCTGCCAC
* ** * * *
14429825 AACCCTCGGTCCAACTGGGGCTTAGACTTAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
323 AACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
** * * * * **
14429890 CGGGCGTATGGGCACTCAGTCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAATCCC
388 CGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGGT-CC
*
14429955 CCTCTGCGTGCTGTCGATCCT
452 CC-CTACGTGCTGTCGATCCT
14429976 GCTATTGTAA
Statistics
Matches: 1111, Mismatches: 200, Indels: 58
0.81 0.15 0.04
Matches are distributed among these distances:
865 5 0.00
866 29 0.03
867 470 0.42
868 599 0.54
869 8 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (867 bp):
CTTAGACAGGGAATGAACTCTGTATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGAGCGGAGAGGCAGAATGCGCTAGCTGAGGATCGGCCC
AGTCCCCCTTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGG
AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGAAGAG
GCATATTGCACAAGCCAGGGATCGACTCGGTCCCCTTTGCGTGCTGCCGATCCCGCTGCCACAAC
CCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGGTCCCCCT
ACGTGCTGTCGATCCTACTGTCGCAACACTCGGTCCGATACGATCTTAGACTGAGAATGAACTCC
ATATGCTTAGACTAGGGATGAACTCTGTATACCTAAGTCAACCCACAAAACGAGCATACGAGAGC
TAAGCCAACCGGAAAGGCATAATACGCAAGACGGGGATCAGTCCGATCCCCTTCCACACGCTACC
GATCCCGCTCCCGATCCTACTACCACAACCCTCGGTCCAACTAGGGCTGAGACATGGAAAGAACT
TCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATG
CACAAGCCAGGGATCAACCCGGTTCCCCCCTGCGTACTACCGATCCTACTGCTGGTCCTGCTACC
GCAACCCTAGATCCGGTCCAAT
Found at i:14430349 original size:158 final size:157
Alignment explanation
Indices: 14429539--14430507 Score: 675
Period size: 158 Copynumber: 6.1 Consensus size: 157
14429529 CTTAGACATT
* * *** *
14429539 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATTGAGCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCAGCCGACCGGAGA
* * * * * * * *
14429604 GACAGAATGCGCTAG-CTGAGGATCGGCCCGGTCCCCCTTGTGTGCTGTCGATCCTGCTGCTACA
66 GGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCA
*
14429668 ACCCTTGGTCCGATCCGATCTTAGACTGG
130 ACCCTCGGTCC-ATCCGATCTTAGACTGG
** * * * * * * *
14429697 GAATGAACTATGTATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCGCTGAGCCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCAGCCGACCGGAGA
* * * * * * ** * ** * **
14429762 GGCATATTGCACAAGCCGGGGGTC-AGCTCGATCCCTTCT-CTGAGCTACCGAT-CTCGTTGCCA
66 GGCAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCCCTGC-GTGCTGTCGATCCT-GCTGCTG
* * ** **
14429824 CAACCCTCGGTCCAACTGGGGCTTAGACTTA
128 CAACCCTCGGTCCATC-CGATCTTAGACTGG
* * * * * ***
14429855 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTATGGGC-ACTCAGTCGGTTGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGA-TCAGCCGACCGGAG
* * **
14429919 AGGCAGAATGCGCAAGCCGGGGATC-AGCCCAATCCCCCTCTGCGTGCTGTCGATCCTGCTATTG
65 AGGCAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCTG
* * * **
14429983 TAACCCTCAGTCCAGTCTGATCTTAGGTTGG
128 CAACCCTCGGTCCA-TCCGATCTTAGACTGG
** * * * *
14430014 GAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTGAGCC-AGTCGAAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCAGCCGA-CCGGAG
* * **** * * * * * * *
14430078 AGACATAATGCGCAAGCC-GAGGATCGGTTTGGTCCCCTTCTGCGTACTGCCGATCCCGCAGCCA
65 AGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCC-CCTGCGTGCTGTCGATCCTGCTG-CT
* ** *
14430142 G-AACCCTCGGTCC-TACAGGGGCTTAGACTTG
127 GCAACCCTCGGTCCAT-C-CGATCTTAGACTGG
** * * *
14430173 GAATGAACTCCCAATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGATCAACCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCAGCCGACCGGAGA
** * *
14430238 GGCAGAATGCGCAAGTAAGGGACCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAA
66 GGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAA
* *
14430303 CCCTCGGTCCGATCCAATCTTAGACCGG
131 CCCTCGGTCC-ATCCGATCTTAGACTGG
* * * * * *
14430331 AAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGC-ACCGAGCCGACCGAAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATC-AGCCGACCGGAG
* * * *
14430395 AGGCATAATGCGCAAGCCAGGGATCGGCCCGATCACCCCCTGCGTGCTGTCCGATCTTGCTGCCG
65 AGGCAGAATGCGCAAGCCAGGGATCGACCCGATC-CCCCCTGCGTGCTGT-CGATCCTGCTGCTG
** *
14430460 CAACCCTTAGTCCAATCTGATCTTAGA-TAGG
128 CAACCCTCGGTCC-ATCCGATCTTAGACT-GG
*
14430491 GAATGAACTTCGTATGC
1 GAATGAACTCCGTATGC
14430508 TTAAACATGG
Statistics
Matches: 608, Mismatches: 176, Indels: 52
0.73 0.21 0.06
Matches are distributed among these distances:
157 9 0.01
158 304 0.50
159 236 0.39
160 59 0.10
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCAGCCGACCGGAGA
GGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAA
CCCTCGGTCCATCCGATCTTAGACTGG
Found at i:14430810 original size:344 final size:344
Alignment explanation
Indices: 14430162--14430816 Score: 739
Period size: 344 Copynumber: 1.9 Consensus size: 344
14430152 TCCTACAGGG
* * *
14430162 GCTTAGACTTGGAATGAACTCCCAATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGATCAA
1 GCTTAAACATGGAATGAACTCCCAATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGATCAA
* * * *
14430227 CCGACCGGAGAGGCAGAATGCGCAAGTAAGGGACCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGACCGAAGAGACAGAATGCGCAAGTAAGGGACCGACCCGATCCCCCCTACGTACTATCGATCC
* * * * *
14430292 TGCTGCTGCAACCCTCGGTCCGATCCAATCTTAGACCGGAAATGAACTCCGTATGCCTAAGCCAA
131 AGCTGCTGCAACCCTCGGTCAGATCCAATCTTAAACCGGAAATGAACTCCATACGCCTAAGCCAA
* * **
14430357 CCCACGAAATGAGCGTGCAGGCACCGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
196 CCCACGAAACGAGCGTGCAGGCACCGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCAA
* * * * * *
14430422 CCCGATCACCCCCTGCGTGCTGTCCGATCTTGCTGCCGCAACCCTTAGTCCAATCTGATCTTAGA
261 CCCGAGCACCCCCTACGTGCTGTCAGATCTCGCTGCCACAACCCTCAGTCCAATCTGATCTTAGA
14430487 TAGGGAATGAACTTCGTAT
326 TAGGGAATGAACTTCGTAT
* *
14430506 GCTTAAACATGGAATGAACT-CCATATGCCTAAGCCAACCCATGAAATGAGCG-AGCGGGCGCTC
1 GCTTAAACATGGAATGAACTCCCA-ATGCCTAAGCCAACCCATGAAACGAGCGTA-CGGGCGATC
* * ** * * *
14430569 AATCGACCGAAGAGACAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTATGTACTGTCGAT
64 AACCGACCGAAGAGACAGAATGCGCAAGTAAGGGACCGACCCGATCCCCCCTACGTACTATCGAT
* ** * * *
14430634 CCAGCTATCT-CAACCCTCGGTCTAG-TCTGATCTTAAACTGGGAATGAACTTCATACGCCTAAG
129 CCAGCT-GCTGCAACCCTCGGTC-AGATCCAATCTTAAACCGGAAATGAACTCCATACGCCTAAG
* * * **** * *
14430697 TCAACCCATGAAACGAGCGTGCGGGTGTTGAGCCGACCGAAGAGGCATAATGCATAAGTC-GAGG
192 CCAACCCACGAAACGAGCGTGCAGGCACCGAGCCGACCGAAGAGGCATAATGCACAAGCCAG-GG
* * * * *
14430761 ATCAACCTG-GCCCCCCTCTACTTGTTGT-AGGTCCTCGCTGCCACAACCCTCAGTCC
256 ATCAACCCGAGCACCCC-CTACGTGCTGTCAGAT-CTCGCTGCCACAACCCTCAGTCC
14430817 GGCTAGGGCT
Statistics
Matches: 253, Mismatches: 51, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
343 12 0.05
344 238 0.94
345 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.19
Consensus pattern (344 bp):
GCTTAAACATGGAATGAACTCCCAATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGATCAA
CCGACCGAAGAGACAGAATGCGCAAGTAAGGGACCGACCCGATCCCCCCTACGTACTATCGATCC
AGCTGCTGCAACCCTCGGTCAGATCCAATCTTAAACCGGAAATGAACTCCATACGCCTAAGCCAA
CCCACGAAACGAGCGTGCAGGCACCGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCAA
CCCGAGCACCCCCTACGTGCTGTCAGATCTCGCTGCCACAACCCTCAGTCCAATCTGATCTTAGA
TAGGGAATGAACTTCGTAT
Found at i:14431018 original size:26 final size:26
Alignment explanation
Indices: 14430982--14431034 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14430972 CTGGTTCGAT
14430982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14431008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14431034 C
1 C
14431035 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14432073 original size:158 final size:153
Alignment explanation
Indices: 14431692--14432137 Score: 412
Period size: 158 Copynumber: 2.8 Consensus size: 153
14431682 GGCTCAAAAT
* * *
14431692 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGTGCTCAACT
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGG-GCGT-CGGGCGCTCAGCC
* * * * **
14431757 GGTCGGAGAGGCAGAATGCGCAAGCTGAGGACCAGTCCGGTCCCCAACTACGTGCTATCGATCCT
64 GGTCGGAAAGGCAGAATGCGCAAGCTGGGGATCA-TCCGGTCCCC-CCTACGTGCTGCCGATCCT
* *
14431822 GCTGCCACAACCGTTGGTCCGTCTAAT
127 GCTGCCACAACCGTTGGTCCGACTAAG
* * * * ** * * *
14431849 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGAATGGGGTCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGGCGTCGGG-CGCTCAGC
* * *
14431914 CGATCGAAAAGGCATAATGCGCAA-CATGGGGATCGATCCGGTCCCCCTCTACGTGCTGCCGAT-
63 CGGTCGGAAAGGCAGAATGCGCAAGC-TGGGGATC-ATCCGGTCCCCC-CTACGTGCTGCCGATC
** **
14431977 CTCGCTGCCACAACC-TTGGTTTGACTGGGG
125 CT-GCTGCCACAACCGTTGGTCCGACT-AAG
* *
14432007 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGGCGT-CGGGCGCTCAGC
* * * * * *
14432072 CGGCCGGAAAGGCAGAATGCACAAGCCGGGGATCAACTCGGTCCCCCCTGCGTGCTGCTGATCCT
63 CGGTCGGAAAGGCAGAATGCGCAAGCTGGGGATCATC-CGGTCCCCCCTACGTGCTGCCGATCCT
14432137 G
127 G
14432138 TTACGGCAAC
Statistics
Matches: 228, Mismatches: 48, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
157 38 0.17
158 183 0.80
159 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (153 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGGCGTCGGGCGCTCAGCCGG
TCGGAAAGGCAGAATGCGCAAGCTGGGGATCATCCGGTCCCCCCTACGTGCTGCCGATCCTGCTG
CCACAACCGTTGGTCCGACTAAG
Found at i:14432201 original size:26 final size:26
Alignment explanation
Indices: 14432165--14432217 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14432155 CCAGTCCGAT
* *
14432165 CTTAGACTGGGAATGAACACCGTATG
1 CTTAAACTGGGAATGAACACCATATG
* *
14432191 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACACCATATG
14432217 C
1 C
14432218 CTAGGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACACCATATG
Found at i:14432574 original size:26 final size:26
Alignment explanation
Indices: 14432545--14432595 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14432535 CCGGTCCGAT
14432545 CTTAGAC-TGGGAATGAACTCCGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
*
14432571 CTTAGACATGGAATGAACTTCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
14432596 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:14432871 original size:159 final size:158
Alignment explanation
Indices: 14432571--14433030 Score: 425
Period size: 159 Copynumber: 2.9 Consensus size: 158
14432561 ACTCCGTATC
* * * * * * *
14432571 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * ** * * * *
14432636 CGACCGGAGAGGCAGAATGA-GCAAGTCAAAGATCGACCAGATCCCTCGCTGTATGCTGTCGATC
66 CGATCGGAGAGGCATAAT-ACACAAACCGAAGATCGACCCGATCCC-CTCTGCATGCTGTCGATC
* * *
14432700 CTACTGCTACAACCATCGGT-CTGATCCGAT
129 CTACTGCTACAACCATCGGTCCAGCT-CGAG
* ** * * *
14432730 CTTAGAC-TGGGAATGAACTCCGTATGTGTAAGTCAACCCATGAAACGAGCGTGCGGGTGTTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
14432794 -CTGACTC-GAGAGGCATAATACGA-AAACCGAAGATCGACCCGATCCGCCTCTGCATGCTGTC-
65 TC-GA-TCGGAGAGGCATAATAC-ACAAACCGAAGATCGACCCGATCC-CCTCTGCATGCTGTCG
* * * *
14432855 AGTCCTGCTGGC-ACAACCCTCGGTCCAGCTGGGG
126 A-TCCTACT-GCTACAACCATCGGTCCAGCTCGAG
*
14432889 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
14432954 CGATCGGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCCTCTCCATGCTAG-CGATCC
66 CGATCGGAGAGGCATAATACACAAACCGAAGATCGACCCGATCCCCTCTGCATGCT-GTCGATCC
* *
14433018 TGCTGCTGCAACC
130 TACTGCTACAACC
14433031 CTCAGACCGG
Statistics
Matches: 246, Mismatches: 39, Indels: 33
0.77 0.12 0.10
Matches are distributed among these distances:
157 2 0.01
158 31 0.13
159 204 0.83
160 9 0.04
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGATCGGAGAGGCATAATACACAAACCGAAGATCGACCCGATCCCCTCTGCATGCTGTCGATCCT
ACTGCTACAACCATCGGTCCAGCTCGAG
Found at i:14433689 original size:11 final size:11
Alignment explanation
Indices: 14433667--14433700 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
14433657 CTCCGACGAA
*
14433667 GCTCAGGTGAT
1 GCTCAGGCGAT
*
14433678 GCTCCGGCGAT
1 GCTCAGGCGAT
14433689 GCTCAGGCGAT
1 GCTCAGGCGAT
14433700 G
1 G
14433701 GTGCCCCGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.26, G:0.38, T:0.21
Consensus pattern (11 bp):
GCTCAGGCGAT
Found at i:14433692 original size:22 final size:22
Alignment explanation
Indices: 14433657--14433700 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14433647 CGGTTAGGCT
*
14433657 CTCCGACGAAGCTCAGGTGATG
1 CTCCGACGAAGCTCAGGCGATG
* *
14433679 CTCCGGCGATGCTCAGGCGATG
1 CTCCGACGAAGCTCAGGCGATG
14433701 GTGCCCCGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.18
Consensus pattern (22 bp):
CTCCGACGAAGCTCAGGCGATG
Found at i:14433808 original size:26 final size:26
Alignment explanation
Indices: 14433770--14433822 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14433760 GGCTCAAAAT
14433770 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14433796 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14433822 C
1 C
14433823 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14434150 original size:159 final size:158
Alignment explanation
Indices: 14433796--14434158 Score: 401
Period size: 158 Copynumber: 2.3 Consensus size: 158
14433786 ACTCCGTATG
* *
14433796 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAACCGAGCGTCCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAAC
* * * *
14433861 CGACCGGAGAGGCAGAATGTGCAAGCTGCGGACAGGCTCGATCCCCCCTGCATGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCTGAGGACAGACCCGATCCCCCCTGCATGCTATCGATCCT
**
14433926 ACTGCCGTAACCCTCGATCCCGTCTGAT
131 ACTGCCACAACCCTCGATCCCGTCTGAT
* * * * * * * * *
14433954 CTTAGA-TTGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAA
** * * *
14434018 CCGGTCGGAGAGGCATAATGCGCAAG-TCGAGGATC-GACCCGATCCCCCACTGCGTGCTGTCGA
65 CCGACCGGAGAGGCAGAATGCGCAAGCT-GAGGA-CAGACCCGATCCCCC-CTGCATGCTATCGA
* * * * *
14434081 TCCTGCTGTCACAACCCTCGGTCCGGT-TGGGT
127 TCCTACTGCCACAACCCTCGATCCCGTCT-GAT
*
14434113 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
14434159 TGGCGTGTTG
Statistics
Matches: 167, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 89 0.53
159 75 0.45
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCTGAGGACAGACCCGATCCCCCCTGCATGCTATCGATCCT
ACTGCCACAACCCTCGATCCCGTCTGAT
Found at i:14434815 original size:184 final size:184
Alignment explanation
Indices: 14434495--14435159 Score: 839
Period size: 184 Copynumber: 3.6 Consensus size: 184
14434485 TCGGGATGGG
** * * * *
14434495 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTGACCCACGAAACGGGCATGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14434560 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTACCAATCC
*
14434625 TGCTGCCACAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** * * *
14434679 TCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATTAAATGGGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14434744 CCAGCAGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCCATCT
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTACCAATCC
*
14434809 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATAT
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
14434863 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14434928 CCAGCCGAAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGGTCACCCCTGCATGCTACCAATCC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTACCAATCC
** * * *
14434993 TGCTATCGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
14435047 GCTTAGAC-TGGGGATGAACTCCGTATACCTTAGTCAACTCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
14435111 GCC-GATCGGAGAGGCATAATGTGCAAGCCAGGGATTGGCCCGATCCCCC
65 GCCAG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
14435160 ACTGTGTGCT
Statistics
Matches: 415, Mismatches: 64, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
183 2 0.00
184 413 1.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTACCAATCC
TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14434876 original size:26 final size:26
Alignment explanation
Indices: 14434838--14434890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14434828 CTGGTCTGAT
14434838 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14434864 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14434890 C
1 C
14434891 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14435051 original size:26 final size:26
Alignment explanation
Indices: 14435022--14435072 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14435012 CTGGTCCGAT
14435022 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14435048 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14435073 ACCTTAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14435078 original size:27 final size:26
Alignment explanation
Indices: 14435022--14435079 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
14435012 CTGGTCCGAT
*
14435022 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATC
*
14435048 CTTAGACTGGGGATGAACTCCGTATAC
1 CTTAGACTGGGAATGAACTCCGTAT-C
14435075 CTTAG
1 CTTAG
14435080 TCAACTCACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:14435986 original size:26 final size:26
Alignment explanation
Indices: 14435945--14435995 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14435935 CCGATCTAAT
14435945 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14435971 CTTAGACTAGGG-ATGAACTCTGTAT
1 CTTAGACT-GGGAATGAACTCTGTAT
14435996 ACCTTAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14436001 original size:27 final size:26
Alignment explanation
Indices: 14435945--14436002 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
14435935 CCGATCTAAT
*
14435945 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATC
14435971 CTTAGACTAGGG-ATGAACTCTGTATAC
1 CTTAGACT-GGGAATGAACTCTGTAT-C
14435998 CTTAG
1 CTTAG
14436003 TCAACTCATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATC
Found at i:14436713 original size:26 final size:26
Alignment explanation
Indices: 14436675--14436727 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14436665 CTGGTCTGAT
14436675 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14436701 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14436727 C
1 C
14436728 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14436888 original size:26 final size:26
Alignment explanation
Indices: 14436859--14436910 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14436849 CTGGTCCGAT
14436859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14436885 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14436911 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14438370 original size:156 final size:156
Alignment explanation
Indices: 14437816--14438379 Score: 420
Period size: 158 Copynumber: 3.6 Consensus size: 156
14437806 CGTAAGCCAA
* * * * * * *
14437816 GGATCGGCTCGGTCCCCCTCTACGTGCTGCCGGT-CTCGTTGCCACAACCCTCGGTCTGGCTAGG
1 GGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCCT-GCTGCCGCAACCCTCGGTCTGTCT-GA
* * * * * * * * * *
14437880 TCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-GGGAGATCC
63 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACAGGCA-CTCA
* ** * * * *
14437944 GTCGGTCAGAGAGGCAAAATGCGCAAGTCGG
126 GCCACTCGGAGAGGCAGAATACGCAAGCCGG
* * * * *
14437975 GGATCAGCCCGGTCCCCCCTACATGCTGTCGATCCTACTGCCGTAACCCTCAGTCTAGTCTGATC
1 GGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCT-GTCTGATC
* * * * * *
14438040 TTATACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCATGCAGGCGCTGAGCC
65 TTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACAGGCACTCAGCC
* * ** **
14438105 AGTCGGAGAGGGCATAATGTGCAAGCTAG
129 ACTCGGAGA-GGCAGAATACGCAAGCCGG
* * * * * ** * **
14438134 GGATTGGCCCGGTCCCCCTCTTCGTGCTGTCGGTCC-GCTGCCACAACCCTCGATCTAACGGGGC
1 GGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGTCTGATC
* * *
14438198 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCATACGGGCACTCAGCC
65 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACAGGCACTCAGCC
* *
14438263 GACT-GGATA-GCAGAATACGTAAGCCGG
129 -ACTCGGAGAGGCAGAATACGCAAGCCGG
* * * *
14438290 GGATCGGCCCGAT-CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGGTTTGATC
1 GGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCT-GTCTGATC
*
14438354 TTAGACTGGGAATGAACTCTGTATGC
65 TTAGACT-GGAATGAACTCCGTATGC
14438380 TTAGACTGGG
Statistics
Matches: 314, Mismatches: 80, Indels: 25
0.75 0.19 0.06
Matches are distributed among these distances:
154 15 0.05
155 22 0.07
156 48 0.15
157 1 0.00
158 143 0.46
159 71 0.23
160 14 0.04
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (156 bp):
GGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGTCTGATCT
TAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACAGGCACTCAGCCAC
TCGGAGAGGCAGAATACGCAAGCCGG
Found at i:14438382 original size:26 final size:26
Alignment explanation
Indices: 14438353--14438405 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14438343 CTGGTTTGAT
*
14438353 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14438379 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14438405 C
1 C
14438406 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14438905 original size:159 final size:158
Alignment explanation
Indices: 14438507--14438929 Score: 451
Period size: 159 Copynumber: 2.7 Consensus size: 158
14438497 TTGTCGATCC
*
14438507 TGCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTAGAACTT-GACATGGAATGAACTCCGTA
1 TGCTACCGATCCTGCTGCCACAACCCTCGGTCTGACTAGAACTTAGACATGGAATGAACTCCGTA
* * * * *
14438571 TGCCTAAGCTAACCCACGAAACGAGCGTGCGGG-AGCTCAGCCGGCCGGAGAGGCAGTATGTGCA
66 TGCCTAAGCCAACCCATGAAATGAGCGTACGGGCA-CTCAGCCGGCCGGAGAGGCAGTATGCGCA
* * *
14438635 AGCCGAGGATCGGCCCGGTCCCCCCTATG
130 AGCCGAGGATCAGCCCGATCCCCCCTATA
** * * ** * * * * *
14438664 TGCTGTCGATCCTGCTGTCGCATGCCTCAGTCT-AGTCCGATCTTATAC-TCGGAATGAACTCCG
1 TGCTACCGATCCTGCTGCCACAACCCTCGGTCTGACT-AGAACTTAGACAT-GGAATGAACTCCG
* *
14438727 TATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTGAGCCGGCCGGAGAGGCA-TAATGCG
64 TATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGT-ATGCG
* * ** *
14438791 CAAGTCGGGGATCAGCCCGATCCTCCTTTTTA
128 CAAGCCGAGGATCAGCCCGATCC-CCCCTATA
* * * ** *
14438823 TGCTACCGATCCTACTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTACCGATCCTGCTGCCACAACCCTCGGTCTGACTAGAACTTAGACATGGAATGAACTCCGTA
* *
14438888 TGCCTAAGCCAACCCATGAAATGGGCGTACGAGCACTCAGCC
66 TGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAGCC
14438930 AGTTGGACAG
Statistics
Matches: 212, Mismatches: 46, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
156 2 0.01
157 32 0.15
158 87 0.41
159 88 0.42
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
TGCTACCGATCCTGCTGCCACAACCCTCGGTCTGACTAGAACTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGTATGCGCAA
GCCGAGGATCAGCCCGATCCCCCCTATA
Found at i:14439018 original size:26 final size:26
Alignment explanation
Indices: 14438977--14439029 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14438967 CTGGTTTGAT
* *
14438977 CTTAGACTGTGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
14439003 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14439029 C
1 C
14439030 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14439584 original size:26 final size:26
Alignment explanation
Indices: 14439547--14439598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14439537 GCTCAAAATA
14439547 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14439573 TTAGAC-GTGGAATGAACTCCGTATGC
1 TTAGACTG-GGAATGAACTCCGTATGC
14439599 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14440023 original size:12 final size:12
Alignment explanation
Indices: 14440006--14440030 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14439996 CTCCCCTGCA
14440006 TGCTGCTAATCC
1 TGCTGCTAATCC
14440018 TGCTGCTAATCC
1 TGCTGCTAATCC
14440030 T
1 T
14440031 ATAGCCGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (12 bp):
TGCTGCTAATCC
Found at i:14440097 original size:26 final size:26
Alignment explanation
Indices: 14440059--14440111 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14440049 CCAGTTCGAT
14440059 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
14440085 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
14440111 C
1 C
14440112 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14440508 original size:159 final size:158
Alignment explanation
Indices: 14440076--14440586 Score: 403
Period size: 158 Copynumber: 3.2 Consensus size: 158
14440066 TGGGAATGAA
* *
14440076 ATCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGG
1 ATCCG-AT-CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG
* * * * * *
14440141 GCGTTCA-ACCGATCGGAGATGCAGAATGCACAAGCCGAGGATCGACCCGATACCCC-CTG-GAT
64 GCGCTCAGTCGGA-CAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGT-CCCCTCTGCG-T
** * *
14440203 GCTGTCGATCCTACTGCCACAACCCTCGGTCTG
126 GCTACCGATCCCACTGCCACAACCCTCGGTCCG
* * * * *
14440236 ATCCGATCTTAGAC-TGGGAGTGAACTCTGTATGCATAAGTCAAACCATGAAACGAGCGTGCGGG
1 ATCCGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
** * * * ** ** * **
14440300 TACTGAGTC-GACTGAAGAGGCATAATGTTCAAGTTGGGGATCGGTCCGGTCCCCCTCTGCGTGC
65 CGCTCAGTCGGACAG-AGAGGCAGAATGCACAAGCCGAGGATCGACCCGGT-CCCCTCTGCGTGC
*
14440364 TACC-AGTCCCGCTGCCACAACCCTTC-GTCCG
128 TACCGA-TCCCACTGCCACAACCC-TCGGTCCG
** * * *
14440395 ACTGGGA-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG
1 A-TCCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
* * * * *
14440459 CGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGGTCCCCTCTGCATGCTG
65 CGCTCAGTCGGACAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCTCTGCGTGCTA
* ** ** * *
14440524 TCGATCCTGCTATCGCAACCCTCGGTTCGG
130 CCGATCCCACTGCCACAACCCTCGG-TCCG
*
14440554 AT-CGATCTTAGAC-TGGGAATGATCTCCGTATGC
1 ATCCGATCTTAGACAT-GGAATGAACTCCGTATGC
14440587 TTAGATTGGG
Statistics
Matches: 272, Mismatches: 64, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 8 0.03
158 134 0.49
159 115 0.42
160 15 0.06
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
ATCCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC
GCTCAGTCGGACAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCTCTGCGTGCTAC
CGATCCCACTGCCACAACCCTCGGTCCG
Found at i:14440534 original size:513 final size:513
Alignment explanation
Indices: 14439547--14440523 Score: 1272
Period size: 513 Copynumber: 1.9 Consensus size: 513
14439537 GCTCAAAATA
* * *
14439547 TTAGACTGGGAATGAACTCCGTATGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCTAACCCA
1 TTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * ** * *
14439612 TGAAACAAGCGTGTGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCTCG
66 TGAAACAAGCGTGCGGGCGCTCAACCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCG
* * * * *
14439677 GTCCCCCCTGCGTACTGTCGATCCTGCGACTATAAACCTCGATCCAGTCAGATATTAAACTAGGA
131 ATACCCCCTGCGTACTGTCGATCCTACGACCACAAACCTCGATCCAGTCAGATATTAAACTAGGA
* * *
14439742 ATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTGATCCGACCGAAGTGG
196 ATAAACTCTGTATGCATAAGTCAAACCACGAAACGAGCGTGCAGGCGTTGATCCGACCGAAGAGG
14439807 CATAATGCGCAAGCCAGGGATCGGCCCGGACCCCCTCTACATGCTACCAGTCCAGCTGCCACAAC
261 CATAATGCGCAAGCCAGGGATCGGCCCGGACCCCCTCTACATGCTACCAGTCCAGCTGCCACAAC
* *
14439872 CCTCAATCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
326 CCTCAATCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
* * * * *
14439937 CATGAGGGAGCTCAGTCGGGCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCTCCCC
391 CATGAGGGAGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGGTCCTCCCC
14440002 TGCATGCTGCTAATCCTGCTGCTAATCCTATAGCCGCAACCTGTGGTCCAGTTCGATC
456 TGCATGCTGCTAATCCTGCTGCTAATCCTATAGCCGCAACCTGTGGTCCAGTTCGATC
*
14440060 TTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
** * *
14440125 TGAAATGAGCGTGCGGGCGTTCAACCGA-TCGGAGATGCAGAATGCACAAGCC-GAGGATCGACC
66 TGAAACAAGCGTGCGGGCGCTCAACCGACT-GGAGAGGCAGAATGCACAAGCCAG-GGATCGACC
* * * * * * *
14440188 CGATACCCCCTG-GATGCTGTCGATCCTACTG-CCACAACCCTCGGT-CTGATCCGATCTTAGAC
129 CGATACCCCCTGCG-TACTGTCGATCCTAC-GACCACAAACCTCGATCCAG-TCAGATATTAAAC
* * * *
14440250 TGGGAGTGAACTCTGTATGCATAAGTCAAACCATGAAACGAGCGTGC-GG-GTACTGAGT-CGAC
191 TAGGAATAAACTCTGTATGCATAAGTCAAACCACGAAACGAGCGTGCAGGCGT--TGA-TCCGAC
* ** *** * * * * *
14440312 TGAAGAGGCATAATGTTCAAGTTGGGGATCGGTCCGGTCCCCCTCTGCGTGCTACCAGTCCCGCT
253 CGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGACCCCCTCTACATGCTACCAGTCCAGCT
*
14440377 GCCACAACCCTTC-GTCCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
318 GCCACAACCC-TCAAT-CGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * *
14440441 ACGAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCGACCC
381 ACGAAACGAGCATGAGGGAGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCGACCC
*
14440506 GGTCC-CCTCTGCATGCTG
446 GGTCCTCCCCTGCATGCTG
14440524 TCGATCCTGC
Statistics
Matches: 396, Mismatches: 58, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
511 2 0.01
512 7 0.02
513 276 0.70
514 111 0.28
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (513 bp):
TTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
TGAAACAAGCGTGCGGGCGCTCAACCGACTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCG
ATACCCCCTGCGTACTGTCGATCCTACGACCACAAACCTCGATCCAGTCAGATATTAAACTAGGA
ATAAACTCTGTATGCATAAGTCAAACCACGAAACGAGCGTGCAGGCGTTGATCCGACCGAAGAGG
CATAATGCGCAAGCCAGGGATCGGCCCGGACCCCCTCTACATGCTACCAGTCCAGCTGCCACAAC
CCTCAATCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
CATGAGGGAGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGGTCCTCCCC
TGCATGCTGCTAATCCTGCTGCTAATCCTATAGCCGCAACCTGTGGTCCAGTTCGATC
Found at i:14440958 original size:26 final size:26
Alignment explanation
Indices: 14440929--14440979 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14440919 CGGTCTGATC
14440929 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
* *
14440955 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
14440980 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:14441209 original size:355 final size:358
Alignment explanation
Indices: 14440378--14441307 Score: 1052
Period size: 368 Copynumber: 2.6 Consensus size: 358
14440368 AGTCCCGCTG
* *
14440378 CCACAACCCTTC-GTCCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCC-TCAATCCGACTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCA
** * * * *
14440442 CGAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATC-GACCC
64 CGAAACGGGCGTGCGGGCGCTCA-TCGATCGGAGAGGCAGAATGCACAAGCCGAGGACCAG-CCC
* * *
14440506 GGTCCCCTCTGCATGCTGTCGATCCTGCTATCGCAACCCTCGGTTCGGATC-GATCTTAGACTGG
127 GGTCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCCTTGGTTCGG-TCTGATCTTAGACTGG
* * * *
14440570 GAATGATCTCCGTATGCTTAGATTGGGGATAAACTTCATATGCCTAAGTCAACCCATGAAATGAG
191 GAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCAACCCACGAAATGAG
* * * *
14440635 CATGCGGGCACTCAGTCGGCCGCAGAGGCCGACAGGAGAGGCATAATGCGTAAGCCGGGGATCAG
256 CATGCGGGCACTCAGT----C-CAGA-G-C-ACAGGAAAGGCATAACGCGTAAGCCGAGGATCAA
* ** * * *
14440700 CCCGGTCCCCCTCTATGTGCTGTCGATCTCACTGCCGGTCCTGCTA
313 CCCAGTCCCCCTCTACATGCTGTCGATCCCACTACCGATCCTGCTA
* * *
14440746 CCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCTCTACGCCTAAGCCAACCCAC
1 CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCAC
* * * *
14440811 GAAACGGGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCACAGGCCGAGGACCAGCCCGG
65 GAAACGGGCGTGCGGGCGCTCATCGA-TCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGG
* * *
14440876 TCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTAGGAA
129 TCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAA
* * * * *
14440941 TGAACTCCGTATGGTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGTAATGAGCGT
194 TGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCAACCCACGAAATGAGCAT
* *
14441006 GTGGGCAGTCAGT-C-GA-C-CA-GAAAGGCATAACGCGTAAGCCGAGGATCAACCCAGTCCCCC
259 GCGGGCACTCAGTCCAGAGCACAGGAAAGGCATAACGCGTAAGCCGAGGATCAACCCAGTCCCCC
* *
14441066 TCTGCATGCTGTCGATCCCGCTACCGATCCTGCTA
324 TCTACATGCTGTCGATCCCACTACCGATCCTGCTA
* ** *
14441101 CCATAACCCTCAATCCGGTTGGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCAC
* * * ** * * * *
14441166 GAAACGAGCGTGCGAGCGTTCATTCGATCGGAGAGTTAGAATGCAAAAGTCGGGGACCA-ACCGG
65 GAAACGGGCGTGCGGGCGCTCA-TCGATCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGG
* * ** * * * *
14441230 TCCCTCTTGCATAATATCGATCCTGTTACCACAACCC-TCGTTCGGTCTGATCTTAGACTGGGAA
129 TCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAA
14441294 TGAACTCCGTATGC
194 TGAACTCCGTATGC
14441308 CTAAGTCAAC
Statistics
Matches: 481, Mismatches: 74, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
353 37 0.08
354 34 0.07
355 164 0.34
356 4 0.01
358 1 0.00
361 2 0.00
362 1 0.00
367 6 0.01
368 231 0.48
369 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (358 bp):
CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACG
AAACGGGCGTGCGGGCGCTCATCGATCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGGTC
CCCCCTGCATGCTGTCGATCCTGCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATGC
GGGCACTCAGTCCAGAGCACAGGAAAGGCATAACGCGTAAGCCGAGGATCAACCCAGTCCCCCTC
TACATGCTGTCGATCCCACTACCGATCCTGCTA
Found at i:14441635 original size:26 final size:26
Alignment explanation
Indices: 14441593--14441645 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14441583 TCGATCCGAT
14441593 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGATTGGGAATGAACTTC-GTATG
**
14441619 CTTAGATTGGGGGTGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
14441645 C
1 C
14441646 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.23, C:0.13, G:0.30, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCGTATG
Found at i:14442364 original size:26 final size:26
Alignment explanation
Indices: 14442327--14442378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14442317 GCTTAAACTT
*
14442327 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTATATGC
14442353 TTAGACAT-GGAATGAACTCTATATGC
1 TTAGAC-TGGGAATGAACTCTATATGC
14442379 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTATATGC
Found at i:14442551 original size:26 final size:26
Alignment explanation
Indices: 14442511--14442562 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14442501 CAATTAGATT
14442511 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
14442537 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14442563 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14442648 original size:184 final size:184
Alignment explanation
Indices: 14442325--14442671 Score: 500
Period size: 184 Copynumber: 1.9 Consensus size: 184
14442315 TGGCTTAAAC
* *
14442325 TTTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACC
1 TTTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * * * * * *
14442390 CATGAAACGAGCGTGCAGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGTAAGCCAGGGATTGGCT
66 CATGAAACGAGCGTACAGGCACTCAGCCGGACAGAGAGGCAAAATGCGTAAGCCAAGGATCGACT
* * *
14442455 TGGTCCCCCCTACGTACTGTCGATCCTGCTGCTACAACCCACGGTCCAATTAGA
131 CGATCCCCCCTACGTACTGTCGATCCTACTGCTACAACCCACGGTCCAATTAGA
* * *
14442509 TTTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
1 TTTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAAC
* *
14442573 CCATGAAACGAGCGTACGGGCACTCAGCC-GACATGAGCGGCAAAATGCGTAAGCCAAGGATCGA
65 CCATGAAACGAGCGTACAGGCACTCAGCCGGACA-GAGAGGCAAAATGCGTAAGCCAAGGATCGA
*
14442637 CTCGATCCCCCCTACGTGCTGTCGATCCTACTGCT
129 CTCGATCCCCCCTACGTACTGTCGATCCTACTGCT
14442672 GGTCCTGCTG
Statistics
Matches: 143, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
183 4 0.03
184 139 0.97
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (184 bp):
TTTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
CATGAAACGAGCGTACAGGCACTCAGCCGGACAGAGAGGCAAAATGCGTAAGCCAAGGATCGACT
CGATCCCCCCTACGTACTGTCGATCCTACTGCTACAACCCACGGTCCAATTAGA
Found at i:14442682 original size:12 final size:12
Alignment explanation
Indices: 14442662--14442692 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14442652 GTGCTGTCGA
14442662 TCCTACTGCTGG
1 TCCTACTGCTGG
*
14442674 TCCTGCTGCTGG
1 TCCTACTGCTGG
14442686 TCCTACT
1 TCCTACT
14442693 ACTACAACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.06, C:0.35, G:0.23, T:0.35
Consensus pattern (12 bp):
TCCTACTGCTGG
Found at i:14443247 original size:26 final size:26
Alignment explanation
Indices: 14443218--14443270 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14443208 CCGGTCTGAT
14443218 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14443244 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14443270 C
1 C
14443271 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14444102 original size:26 final size:26
Alignment explanation
Indices: 14444073--14444125 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14444063 CCGGTCTAAT
14444073 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14444099 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14444125 C
1 C
14444126 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14444487 original size:26 final size:26
Alignment explanation
Indices: 14444451--14444503 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14444441 CTGGTCTGAT
*
14444451 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
14444477 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
14444503 C
1 C
14444504 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:14445497 original size:158 final size:158
Alignment explanation
Indices: 14445202--14445504 Score: 347
Period size: 158 Copynumber: 1.9 Consensus size: 158
14445192 CCGTATGCTT
* * * * **
14445202 GACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGT
1 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGAC
* * * ** * ** *
14445267 CGGAGAGGTAGAATGAGCAACCCAGGGATTGGCCCGGTCCCCTTTTGCTGCTGCCGGTCCCGCTA
66 CGGAGAGGCAGAATGAGCAACCCAGGGATCGACCCGAACCCCCTACGCTGCTGCCGATCCCGCTA
14445332 CCACAACCCTCGGTCTGGTTGGGGTTTA
131 CCACAACCCTCGGTCTGGTTGGGGTTTA
*
14445360 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGACGCTCAGCCGAC
1 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGAC
* * * ** * * * *
14445425 CGGGGAGGCAGAATGCGCAAGCTGGGGATCGACCTGAACCACCCTACG-TGCTGTCGATCCTGTT
66 CGGAGAGGCAGAATGAGCAACCCAGGGATCGACCCGAACC-CCCTACGCTGCTGCCGATCCCGCT
* *
14445489 GCCGCAACCCTCGGTC
130 ACCACAACCCTCGGTC
14445505 CAATTAGATC
Statistics
Matches: 117, Mismatches: 27, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
158 113 0.97
159 4 0.03
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGAC
CGGAGAGGCAGAATGAGCAACCCAGGGATCGACCCGAACCCCCTACGCTGCTGCCGATCCCGCTA
CCACAACCCTCGGTCTGGTTGGGGTTTA
Found at i:14446037 original size:159 final size:157
Alignment explanation
Indices: 14445748--14446249 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 157
14445738 ACTCCATATG
** * *
14445748 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
* * * * *
14445813 CGGTCGGAGAGGTAGAATGTGCTAGTCGGGGATCGGTCCGGTCCCCCCCTGTGTGCTG-TCGATC
66 CGATCGGAGAGGTAGAATGAGCAAGTCGGGGATCGATCCAGT-CCCCCCTGTGTGCTGCT-GATC
* *
14445877 CTGCTGCTGCAACCCTCAGTCCGGTCCGAT
129 CTGCTCCCGCAACCCTC-GTCCGGTCCGAT
* *
14445907 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGTAACGAGCGTTCGGGCG-TCGA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTC-A
* * * * *
14445970 GCCGACCGGAGAGGCATAATGAGCAAGTCGGGGATCAATCCAGTCCCCCTCTGCGTGCTGCTGAT
64 GCCGATCGGAGAGGTAGAATGAGCAAGTCGGGGATCGATCCAGTCCCCC-CTGTGTGCTGCTGAT
** * * * **
14446035 CCTGCTCCCATAACCCTTGGTCTGG-CTGGGG
128 CCTGCTCCCGCAACCC-TCGTCCGGTC-CGAT
* * * *
14446066 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCG-TCGAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
* * * * * * * *
14446130 CGATCAGAGAGGTAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCTCCTGTGTGCTACCGATCC
66 CGATCGGAGAGGTAGAATGAGCAAGTCGGGGATCGATCCAG-TCCCCCCTGTGTGCTGCTGATCC
* *
14446194 TGCTCCCGCAACCTTCGATCCAGTCCGAT
130 TGCTCCCGCAACCCTCG-TCCGGTCCGAT
*
14446223 CTTAAAC-TGAGAATGAACTCCATATGC
1 CTTAGACATG-GAATGAACTCCATATGC
14446250 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 55, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
156 4 0.01
157 54 0.20
158 51 0.18
159 164 0.59
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
CGATCGGAGAGGTAGAATGAGCAAGTCGGGGATCGATCCAGTCCCCCCTGTGTGCTGCTGATCCT
GCTCCCGCAACCCTCGTCCGGTCCGAT
Found at i:14446252 original size:26 final size:26
Alignment explanation
Indices: 14446223--14446275 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14446213 CCAGTCCGAT
14446223 CTTAAACTGAGAATGAACTCCATATG
1 CTTAAACTGAGAATGAACTCCATATG
* * * *
14446249 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGAGAATGAACTCCATATG
14446275 C
1 C
14446276 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGAGAATGAACTCCATATG
Found at i:14446613 original size:171 final size:170
Alignment explanation
Indices: 14446327--14446727 Score: 461
Period size: 171 Copynumber: 2.3 Consensus size: 170
14446317 CTGGAGAGGT
* * * * * ** *
14446327 CGACCGAAGAGGCATAATACACAAGCCGGGGATCAACCC-AGTCCCCCTTTGAATGCTGCCTATC
1 CGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGA-TCCCTC-TTGCGTGCTGCCGATC
* * * * * * *
14446391 TCACTGCTGGTCTTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCTGT
64 CCACTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTGGAGCCTAGACATGGAATGAACTCCGT
*
14446456 ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGAAGCTCAGC
129 ATGCCTAAGCCAACCCACAAAACGAGCGTGCAGAAGCTCAGC
* *
14446498 TGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATCC
1 CGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCTCT-TGCGTGCTGCCGATCC
*
14446563 CGCTGCCGGTCCTGCTACCACAACCCTC-GATCCGACTGGAGCCTAGACATGGAATGAACTCCGT
65 CACTGCCGGTCCTGCTACCACAACCCTCAG-TCCGACTGGAGCCTAGACATGGAATGAACTCCGT
* ** **
14446627 ATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGTGCTCAGC
129 ATGCCTAAGCCAACCCACAAAACGAGCGTGCAGAAGCTCAGC
* *
14446669 CGATCGAAGAGGCAGAATG-GACAAG-TCGGGGATC-GACCCGATCCCTCATTGCGTGCTGC
1 CGACCGAAGAGGCATAATGCG-CAAGCT-GGGGATCAG-CCCGATCCCTC-TTGCGTGCTGC
14446728 TGACCCTGCT
Statistics
Matches: 195, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
170 5 0.03
171 188 0.96
172 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (170 bp):
CGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCTCTTGCGTGCTGCCGATCCC
ACTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTGGAGCCTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACAAAACGAGCGTGCAGAAGCTCAGC
Found at i:14446906 original size:159 final size:159
Alignment explanation
Indices: 14446613--14447106 Score: 359
Period size: 159 Copynumber: 3.1 Consensus size: 159
14446603 GCCTAGACAT
* * * *
14446613 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGTGCTCAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGACCGAAG
* * * *
14446678 AGGCAGAATGGACAAGTCGGGGATCGACCCGATCCCTCATTGCGTGCTGCTGACCCTGCTACCCT
66 AGGCAGAATGGACAAGCCGGGGATCGACCCGATCCCCCATTGCGTGCTGCAGACCCTGCTACACT
14446743 AACCCTCGGTCTGGTCCTATCTTAGACTA
131 AACCCTCGGTCTGGTCCTATCTTAGACTA
* ** * *
14446772 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAACC-AGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGA-CCGAA
* * * * *
14446836 GAGGCATAATGCG-CAAGCCGGGGATTGGCCC-AGTCCCCCTTTGCGTGCTGCCAGTCCC-GCTG
65 GAGGCAGAATG-GACAAGCCGGGGATCGACCCGA-TCCCCCATTGCGTGCTG-CAGACCCTGCT-
* * * **
14446898 GCAC-AACCCTC-GACT--TAGCTGGGGCTTAGAC-A
126 ACACTAACCCTCGGTCTGGT-CCT--ATCTTAGACTA
* * ** * * * * * * *
14446930 TGGAATGAACTCCCTATGCCTAAGCCAACACATGAAACGGGCATGTGGGCGCTCAGCCGGCTGAA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGACCGAA
* * * * *
14446995 GAGGCCGAAT-GAGCAAGCCAGGGATCGGCCTGATCCCTCCA--GCGTGCTGTC-GATCCTGCTA
65 GAGGCAGAATGGA-CAAGCCGGGGATCGACCCGATCCC-CCATTGCGTGCTG-CAGACCCTGCTA
* * * *
14447056 TCGC-AACCCTCGGTCCGGTTCGATCTTAGACTA
127 -CACTAACCCTCGGTCTGGTCCTATCTTAGACTA
* * *
14447089 TGAACGAACTCCATATGC
1 GGAATGAACTCCGTATGC
14447107 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 55, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 49 0.19
159 191 0.73
160 12 0.05
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGACCGAAG
AGGCAGAATGGACAAGCCGGGGATCGACCCGATCCCCCATTGCGTGCTGCAGACCCTGCTACACT
AACCCTCGGTCTGGTCCTATCTTAGACTA
Found at i:14449215 original size:158 final size:156
Alignment explanation
Indices: 14448725--14449207 Score: 447
Period size: 158 Copynumber: 3.1 Consensus size: 156
14448715 GCTTACACAT
* * * * * *
14448725 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCTTGCGGGTGCTTAGCTGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAG
* * *
14448790 AGGCAGAATGCGCAAGCTGGGGATCGGCCC-AGTCCCCCTGCGTGCTGTCGATCCTGCTACCGCA
66 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGA-TCCCCTTGCGTGCTGTCGATCCTGCTACCGCA
**
14448854 ACCCTTAATCC-AGTCCGATCTTAGACTG
130 ACCCTCGATCCGA-T-CGATCTTAGACTG
* * * * * * * * *
14448882 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGACCGTACA-ACGTTGAACCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAG
* * * * * * * *
14448946 TGGCATAATACGCAAGCC-AGGGATCGACCCGATCCCCCTCTACGTGCTGCCGGT-CTCACTACC
66 AGGCAGAATGCGCAAGCCGA-GGATCGGCCCGAT-CCCCT-TGCGTGCTGTCGATCCT-GCTACC
* * * *
14449009 ACAACCCTCGATACGGTCGAGGCTTAGACAT-
127 GCAACCCTCGATCCGATCGA-TCTTAGAC-TG
* * * *
14449040 GGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCCGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAG
* * * * **
14449105 AGGTAGAATGCACAAGCCGAGGATTGGCCCGATCCTTCTTGCGTGCTGTCGATCCTGCTGTCGCA
66 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCC-CCTTGCGTGCTGTCGATCCTGCTACCGCA
14449170 ACCCTCGATCCGATCTGATCTTAGACTG
130 ACCCTCGATCCGATC-GATCTTAGACTG
14449198 GGAATGAACT
1 GGAATGAACT
14449208 TTGTATGCTT
Statistics
Matches: 249, Mismatches: 63, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
156 36 0.14
157 49 0.20
158 120 0.48
159 43 0.17
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCTTGCGTGCTGTCGATCCTGCTACCGCAA
CCCTCGATCCGATCGATCTTAGACTG
Found at i:14449708 original size:159 final size:157
Alignment explanation
Indices: 14449215--14449717 Score: 413
Period size: 159 Copynumber: 3.2 Consensus size: 157
14449205 ACTTTGTATG
* * * * * *
14449215 CTTAGACTGGGGATGGACTCCATATGCCCAAGTCAACCCACAAAACAAGCGTGCAGGCTCTCAAC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACAGGCGTGCGGGCT-TCAAC
* * * ** * * * * * *
14449280 CGGCCAGAGAGGCAGATTGCGCTAGCCAAGGATCAACCCGATTCCCCCCTGGGCGCTGTCAATCC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCG-GTCCCCCCTGCGTGCTGTCGATCC
* * *
14449345 TGCTGTCACAACCCTCGGTCCGATCCGAT
129 TGCTGACGCAACCCTCGGTCCGGTCCGAT
* * * * * * * * *
14449374 CTTAGACTAGGAATGAACTCCGTATGCATAATTCAACCCCCAAAAC-GAGCGTGTGGGCCCTGAG
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACAG-GCGTGCGGG-CTTCAA
* * * * * * * * * *
14449438 CCAGCCGAAAAGGCATAATGCGTAAGCTGGGGATCAGCTCGGTCCCTCTCTGTGTGCTGTTGGT-
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCC-CCCTGCGTGCTGTCGATC
* * * **
14449502 CTCGCT-ATGCAACCCCCGGTCCGGTCGGGG
128 CT-GCTGACGCAACCCTCGGTCCGGTCCGAT
* *
14449532 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACAGGCGTGCGGGCGTTCAA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACAGGCGTGCGGGC-TTCAA
* *
14449596 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGGATCAGCTTGGTCCCCCCTGCGTGCTGTCGATC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCC-GGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATC
* * * *
14449661 CTGCTGCCGTAACCCTCGATCCGGTCTGAT
128 CTGCTGACGCAACCCTCGGTCCGGTCCGAT
14449691 CTTAGACTGGGAATGAAC-CCCGTATGC
1 CTTAGACTGGGAATGAACTCCC-TATGC
14449718 TTAGACTAGG
Statistics
Matches: 260, Mismatches: 72, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 1 0.00
158 111 0.43
159 147 0.57
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACAGGCGTGCGGGCTTCAACC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGACGCAACCCTCGGTCCGGTCCGAT
Found at i:14449732 original size:26 final size:26
Alignment explanation
Indices: 14449691--14449743 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14449681 CCGGTCTGAT
14449691 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
14449717 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACCCCGTATG
14449743 C
1 C
14449744 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:14451334 original size:26 final size:26
Alignment explanation
Indices: 14451296--14451348 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14451286 GGCTCAAAAT
14451296 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14451322 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14451348 C
1 C
14451349 CCAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14451835 original size:158 final size:155
Alignment explanation
Indices: 14451322--14452131 Score: 527
Period size: 159 Copynumber: 5.1 Consensus size: 155
14451312 ACTCCGTATG
* * * * * **
14451322 CTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCATGTGGGTGCTCAAT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGTGCTCAGC
* * * * * ** * * *
14451387 CGG-CTGGAGAGGCAGAATACGCAAACCGAGGTTCGGCCTGATCCCCCACTGCGTGCTATCAATC
65 CGGTC-GGAGAGGCAGAATGCGTAAGCCGGGGATCAACC-GGTCCCCC-CTGCGTGCTGTCGATC
* * * * **
14451451 CTACTATCATAATCCT-GAGTCCGGTTTGAT
127 CTGCTACCGTAACCCTCG-GTCC-GTCCGAT
* * * ** * * *
14451481 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGTGCTCAG
* * ** * * * * ** *
14451545 CCGATCGAAGAGGCATCATGCGCAAGCCAGGGATCGACCCGGTCCCCTTCTGCGTGCTACCGGTC
64 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATC-AACCGGTCCCC-CCTGCGTGCTGTCGATC
* * ** * * * **
14451610 CCGCTGCCACAACCCTCAGTCCGGCTGGGG
127 CTGCTACCGTAACCCTCGGTCCGTC-CGAT
* * *
14451640 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGTGCTCAGC
* * *
14451705 CGGTCGGAGAGGCAGAATGCGTAAACCGGGGATCAACTCGGTCCCCCCTGTGTGCTGTCAATCCT
65 CGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCAAC-CGGTCCCCCCTGCGTGCTGTCGATCCT
* * * *
14451770 GCTATCGTAACCTTTGGTTCAGTCCGAT
129 GCTACCGTAACCCTCGG-TCCGTCCGAT
* * * * * *
14451798 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGG-GCGTGCGGGTGCTCAG
** * ** * * * **
14451862 CCGACCGGAGAGGCATAATATGTAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTACCGATC
64 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATC-AACCGGTCCCCC-CTGCGTGCTGTCGATC
* * ** * * **
14451927 CCGCTGCCAAAACCCTCGGTCCGACTGGGG
127 CTGCTACCGTAACCCTCGGTCCGTC-CGAT
* * *
14451957 CTTAGACATGGAATGAACTCCCTATGCCTAGGCCAA-CCACGAAACGGGCGTGCAGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGTGCTCAGC
* * ** *
14452021 CGGTCAGAGAGGTAGAATGCACAAGCCGGGGATCAGCCTGG-CCCCCCTGCGTGCTGTCGATCCT
65 CGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCAACC-GGTCCCCCCTGCGTGCTGTCGATCCT
14452085 GCTACCGTAACCCTCGGTCCGATCCGAT
129 GCTACCGTAACCCTCGGTCCG-TCCGAT
14452113 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
14452132 TTGTATGCTT
Statistics
Matches: 489, Mismatches: 143, Indels: 41
0.73 0.21 0.06
Matches are distributed among these distances:
155 1 0.00
156 51 0.10
157 12 0.02
158 162 0.33
159 258 0.53
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGGCGTGCGGGTGCTCAGCC
GGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCAACCGGTCCCCCCTGCGTGCTGTCGATCCTGC
TACCGTAACCCTCGGTCCGTCCGAT
Found at i:14451898 original size:317 final size:316
Alignment explanation
Indices: 14451321--14452139 Score: 1040
Period size: 317 Copynumber: 2.6 Consensus size: 316
14451311 AACTCCGTAT
* * * * *
14451321 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCATGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
* * * * * *
14451386 TCGG-CTGGAGAGGCAGAATACGCAAACCGAGGTTCGGCCTGATCCCCCACTGCGTGCTATCAAT
66 TCGGTC-GGAGAGGCAGAATGCGCAAACCGGGGATCAGCCTGGTCCCCC-CTGCGTGCTGTCAAT
* * * * ** *
14451450 CCTACTATCATAATCC-TGAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
129 CCTGCTATCGTAA-CCTTG-GTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGT
* * *
14451514 CAACCCACGAAACAAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATCATGCGCAAGCCAGGGAT
192 CAACCCACGAAACAAGCGTACGGGCGCTGAGCCGACCGAAGAGGCATAATACGCAAGCCAGGGAT
* * * * *
14451579 CGACCCGGTCCCCTTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCCGGCTGGG
257 CGACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCAAAACCCTCAGTCCGACTGGG
* * * *
14451639 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
* * *
14451704 TCGGTCGGAGAGGCAGAATGCGTAAACCGGGGATCA-ACTCGGTCCCCCCTGTGTGCTGTCAATC
66 TCGGTCGGAGAGGCAGAATGCGCAAACCGGGGATCAGCCT-GGTCCCCCCTGCGTGCTGTCAATC
*
14451768 CTGCTATCGTAACCTTTGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
130 CTGCTATCGTAACC-TTGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
** * * *
14451833 ACCCACGAAAGGAGCGTACGGGCGCTGAGCCGACCGGAGAGGCATAATATGTAAGCC-GAGGATC
194 ACCCACGAAACAAGCGTACGGGCGCTGAGCCGACCGAAGAGGCATAATACGCAAGCCAG-GGATC
*
14451897 GACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCAAAACCCTCGGTCCGACTGGG
258 GACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCAAAACCCTCAGTCCGACTGGG
* *
14451956 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAA-CCACGAAACGGGCGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
* * * * * *
14452020 CCGGTCAGAGAGGTAGAATGCACAAGCCGGGGATCAGCCTGG-CCCCCCTGCGTGCTGTCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAACCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCAATCC
* * * *
14452084 TGCTACCGTAACCCTCGG-TCCGATCCGATCTTAGACTGGGAATGAACTTTGTATGC
131 TGCTATCGTAA-CCTTGGTTCAG-TCCGATCTTAGACTGGGAATGAACTTCGTATGC
14452140 TTAGATTAGG
Statistics
Matches: 434, Mismatches: 59, Indels: 19
0.85 0.12 0.04
Matches are distributed among these distances:
314 3 0.01
315 65 0.15
316 59 0.14
317 212 0.49
318 94 0.22
319 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
TCGGTCGGAGAGGCAGAATGCGCAAACCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCAATCC
TGCTATCGTAACCTTGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAAC
CCACGAAACAAGCGTACGGGCGCTGAGCCGACCGAAGAGGCATAATACGCAAGCCAGGGATCGAC
CCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCAAAACCCTCAGTCCGACTGGG
Found at i:14452525 original size:26 final size:25
Alignment explanation
Indices: 14452491--14452545 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
14452481 GTCCGGTCCA
14452491 ATGCTAGAC-TGGGAATGAACTCCGT
1 ATGCTAGACAT-GGAATGAACTCCGT
14452516 ATGCTTAGACATGGAATGAACTCCGT
1 ATGC-TAGACATGGAATGAACTCCGT
14452542 ATGC
1 ATGC
14452546 CTAAGCCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 4 0.14
26 23 0.82
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (25 bp):
ATGCTAGACATGGAATGAACTCCGT
Found at i:14452705 original size:26 final size:26
Alignment explanation
Indices: 14452676--14452728 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14452666 CCAGTCCGAT
14452676 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
14452702 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14452728 C
1 C
14452729 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14453770 original size:26 final size:26
Alignment explanation
Indices: 14453741--14453790 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14453731 GTCTGATCTT
*
14453741 AGACT-GGGAATGAACTCTGTATGCTG
1 AGACTAGGG-ATGAACTCCGTATGCTG
14453767 AGACTAGGGATGAACTCCGTATGC
1 AGACTAGGGATGAACTCCGTATGC
14453791 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTAGGGATGAACTCCGTATGCTG
Found at i:14454496 original size:26 final size:26
Alignment explanation
Indices: 14454458--14454508 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14454448 GGCTCAAAAT
14454458 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
14454484 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
14454509 GCCTAAGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:14455236 original size:327 final size:313
Alignment explanation
Indices: 14454484--14455246 Score: 870
Period size: 327 Copynumber: 2.4 Consensus size: 313
14454474 ACTCCGTATC
* * *
14454484 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCTAACCCACGAAACGAGCATGCGGGCGCTTAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCC-AACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
14454549 CCGGTCGAAGAGGCA-AAAGCACAAGATGGGGATCGGCCCGGT-CCCCCTGCATGCTATCGATCA
65 CCGATCGAAGAGGTAGAATGCGCAAGCTGGGGATCGG-CCGGTCCCCCCTGCATGCTATCGATCA
* * * * * *
14454612 TGCTGCTGCAACCCTTAGTCCGGTCCAATCTTAGATTGGGAATGAACTTCGTATGCATAAGTCAA
129 TGCTACCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* ** * * *
14454677 CCCACGAAACGAGCGTGCGGGCGTTGAGCAGGTCGAAGAGGCATAATGCAAGTCGAGGATCGGCC
194 CCCAC-AAACGAGCGTACGGGCACTCAGCAGGTCGAAGAGGCATAATGCAAGCCGAGGATCAGCC
* * *
14454742 CGATCCCCCTCTACATGCTGTCGGTCCCGCTACCATAACCCTCGGTCAGGCTGGGG
258 CGATCCCCCTCTACATGCTGTCGGTCCCGCTACCACAACCCTCGATCAGACTGGGG
* *
14454798 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
14454863 CGATCGAAGAGGTAGAATGCGCAAGCTGGGGATTGGCCAAGTCCCCCCTGCGTGTTGTCGATCTT
66 CGATCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGCC-GGTCCCCCCTGCATGCTATCGATCAT
* * *
14454928 GCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAT
130 GCTACCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA-
* * *
14454993 CTCA-AAACGAGCGTACGGGCACTCAGCCA-GTCGGAGAGGCATAATGCACAAGCCGGGGATCAG
194 CCCACAAACGAGCGTACGGGCACTCAG-CAGGTCGAAGAGGCATAATG--CAAGCCGAGGATCAG
* * * * *
14455056 CCCGGTCCCCCTCTGCGTGCTG-CGGATCCCGCTGCCGGTCTACCGCCACAACCCTCGATCCGAT
256 CCCGATCCCCCTCTACATGCTGTCGG-T----C--CC-G-CTA---CCACAACCCTCGATCAGAC
14455120 TGGGG
309 TGGGG
* * *
14455125 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* *
14455190 CGACCGAAGAGGTAGAATGCGCAAGCTGGGGATCGACTCGGTCCCCCCCTGCATGCT
66 CGATCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGC-CGGT-CCCCCCTGCATGCT
14455247 GTTGATCCAG
Statistics
Matches: 375, Mismatches: 53, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
313 41 0.11
314 86 0.23
315 78 0.21
316 35 0.09
320 1 0.00
322 2 0.01
323 1 0.00
324 3 0.01
327 115 0.31
328 13 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (313 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGATCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGCCGGTCCCCCCTGCATGCTATCGATCATG
CTACCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
CACAAACGAGCGTACGGGCACTCAGCAGGTCGAAGAGGCATAATGCAAGCCGAGGATCAGCCCGA
TCCCCCTCTACATGCTGTCGGTCCCGCTACCACAACCCTCGATCAGACTGGGG
Found at i:14455994 original size:26 final size:26
Alignment explanation
Indices: 14455956--14456031 Score: 136
Period size: 26 Copynumber: 2.9 Consensus size: 26
14455946 GGCTCAAAAT
14455956 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14455982 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14456008 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
14456032 AGCCTAAGCC
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14456351 original size:159 final size:157
Alignment explanation
Indices: 14456007--14456500 Score: 428
Period size: 159 Copynumber: 3.1 Consensus size: 157
14455997 AACTCCGTAT
* *
14456007 GCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACAAAACGAATGCGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAATGCGCGGGTGCTCAG
* * ** * * *
14456072 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGGCTGATCCTCCTGCGTGCTGTCGATCCT
66 CCAGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGCCCAGATCCTCCTGCGTGCTGCCGATCCC
*
14456137 GCTACCACAACCCTCGGTCTGGTCTGA
131 ACTACCACAACCCTCGGTCTGGTCTGA
* * ** * *
14456164 TCGTAGAC-TGGGAATGAACTCCATATGCCTAAGTTAACCCACAAAATG-A-GCGTGTAGGTGCT
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAATGCGCG--GGTGCT
* * *
14456226 GAGCCAGTCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCAG-TCCCCTTCTGCGTGCTGCC
63 CAGCCAGTCGGAAAGGCAGAATGCGCAAGCCGGGGATC-GCCCAGAT--CCTCCTGCGTGCTGCC
*
14456290 -AGTCCCACTACCACAACCCTCGGTCTGG-CTGGG
125 GA-TCCCACTACCACAACCCTCGGTCTGGTCT-GA
* * *** * *
14456323 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAATGCGCGGGTGCTCAG
* * * * * ** * * *
14456388 CC-GCCCAGAGAGGCAGAAAGCGCAAGCCGGGGATCGGCTTGGTCCCCCCTGCGTGCTGCTGATC
66 CCAG-TCGGAAAGGCAGAATGCGCAAGCCGGGGATCGCCCAGAT-CCTCCTGCGTGCTGCCGATC
* * ** ** *
14456452 CTACTGCTGCAACCCTCAATCCGGTCTGA
129 CCACTACCACAACCCTCGGTCTGGTCTGA
*
14456481 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
14456501 ATGTATGCTT
Statistics
Matches: 269, Mismatches: 52, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
155 4 0.01
156 2 0.01
157 81 0.30
158 61 0.23
159 117 0.43
160 1 0.00
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAATGCGCGGGTGCTCAG
CCAGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGCCCAGATCCTCCTGCGTGCTGCCGATCCC
ACTACCACAACCCTCGGTCTGGTCTGA
Found at i:14456532 original size:26 final size:26
Alignment explanation
Indices: 14456482--14456532 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14456472 CCGGTCTGAT
*
14456482 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
14456508 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTACGTAT
14456533 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14457748 original size:26 final size:26
Alignment explanation
Indices: 14457719--14457769 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14457709 AGTTCGATCA
*
14457719 TAGATTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
14457745 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
14457770 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:14458825 original size:159 final size:158
Alignment explanation
Indices: 14458534--14459071 Score: 541
Period size: 159 Copynumber: 3.4 Consensus size: 158
14458524 ATCACACTGC
* *
14458534 CGATCCTGCTACCACAACCCTCGGTCCGGCTGAGGCTTAGACATGGAATGAACTCCATATGCCTA
1 CGATCCTGCTACCACAACCCTCAGTCCGGCTGAGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * *
14458599 AGCCAACCCATGAAACGAGCATGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGTCGAG
66 AGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTAGCCAGAGAGGCAGAATGCGCAAGTCGAG
* *
14458664 GATCGACCCATTCCCCCCTTGCGTGTTGT
131 GATCGGCCCA-TCCCCCCTTGCGTGCTGT
* * * * *
14458693 CGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGA-TCTTAGAC-TGGGAATGAACTCCGTATGCA
1 CGATCCTGCTACCACAACCCTCAGTCCGGCT-GAGGCTTAGACAT-GGAATGAACTCCGTATGCC
* * * * * * * * *
14458756 TAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAACTAGCCAAAGAGGCATAATGTGCAAGCCG
64 TAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTAGCCAGAGAGGCAGAATGCGCAAGTCG
**
14458821 AGGATCGGCCTGGT-CCCCCTCTGCGTGCTGT
129 AGGATCGGCC-CATCCCCCCT-TGCGTGCTGT
* * * * *
14458852 CGGT-CTCGCTACCACAACCCTCGGTCTGACTGAGGCTTAGACATGGAATGAACTCCTTATGCCT
1 CGATCCT-GCTACCACAACCCTCAGTCCGGCTGAGGCTTAGACATGGAATGAACTCCGTATGCCT
* * * * * * *
14458916 AAGCCAACCCATGAAATGGGCGTACGGGTGCTCAGCTGGCTAGAGAGGTAGAATGCGCAAGTCAA
65 AAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTAGCCAGAGAGGCAGAATGCGCAAGTCGA
*
14458981 GGATCGGCCCGATCCCCCC-TGCGTCCTGT
130 GGATCGGCCC-ATCCCCCCTTGCGTGCTGT
* * ** * *
14459010 CGATCTTGCTATCGTAACCCTCAGTCCGGTCCGA-TCTTAGAC-TGGGAATGAACTCCGTATGC
1 CGATCCTGCTACCACAACCCTCAGTCCGG-CTGAGGCTTAGACAT-GGAATGAACTCCGTATGC
14459072 TTAGACTGGG
Statistics
Matches: 301, Mismatches: 66, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 63 0.21
159 229 0.76
160 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CGATCCTGCTACCACAACCCTCAGTCCGGCTGAGGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTAGCCAGAGAGGCAGAATGCGCAAGTCGAG
GATCGGCCCATCCCCCCTTGCGTGCTGT
Found at i:14459074 original size:26 final size:26
Alignment explanation
Indices: 14459045--14459097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14459035 CCGGTCCGAT
14459045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14459071 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14459097 C
1 C
14459098 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14459525 original size:354 final size:354
Alignment explanation
Indices: 14458852--14459526 Score: 905
Period size: 354 Copynumber: 1.9 Consensus size: 354
14458842 TGCGTGCTGT
* *
14458852 CGGTCTCGCTACCACAACCCTCGGTCTGACTGAGGCTTAGACATGGAATGAACTCCTTATGCCTA
1 CGGTCTCGCAACCACAACCCTCGGTCTGACTGAGGATTAGACATGGAATGAACTCCTTATGCCTA
* * * * * * * *
14458917 AGCCAACCCATGAAATGGGCGTACGGGTGCTCAGCTGGCTAGAGAGGTAGAATGCGCAAGTCAAG
66 AGCCAACCCATGAAATGAGCGTACGAGCGCTCAACTGACCAGAGAGGCAGAATACGCAAGTC-AG
* * *
14458982 GATCGGCCCGATCCCCCCTGCGTCCTGTCGATCTTGCTATCGTAACCCTCAGTCCGGTCCGATCT
130 GATCGGCCCGATCCCCCCTACGTCCTGTCGATCCTGCTACCGTAACCCTCAGTCCGGTCCGATCT
* * * *
14459047 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAT
195 TAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * *
14459112 GAAACGAGCGTACGGGCACTCAGCCGGTCGGAGAGGCATAATGTGTAAGCCAGGGATCAGCAAGG
260 GAAACGAGCGTACGGGCACTCAACCGGTCGGAGAGGCAGAAAGTGCAAGCCAGGGATCAGCAAGG
14459177 TCCCCCTCTCCATGCTGCCGATCCCGTTGC
325 TCCCCCTCTCCATGCTGCCGATCCCGTTGC
* ** *
14459207 CGGTCTTGCAACCACAACCCTCGGT-TCGGGTGGGGATTAGACATGGAATGAACT-CTGTATGCC
1 CGGTCTCGCAACCACAACCCTCGGTCT-GACTGAGGATTAGACATGGAATGAACTCCT-TATGCC
* * *
14459270 TAAGCTAACCCATGAAATGAGCGTGCGAGCGCTCAACTGACCGGAGAGGCAGAATACGCAAGTC-
64 TAAGCCAACCCATGAAATGAGCGTACGAGCGCTCAACTGACCAGAGAGGCAGAATACGCAAGTCA
* * * *
14459334 GGCAATCGGCCCGAT-CCCCCTACGTGCTGTCGATCCTGCTGCCAG-AACCCTTAGTCCGGTCTG
129 GG--ATCGGCCCGATCCCCCCTACGTCCTGTCGATCCTGCTACC-GTAACCCTCAGTCCGGTCCG
*
14459397 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-AGAATGAACTCCGTATGCCTAAGCCAA
191 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAA
* * *
14459461 CCCATGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAAAGTGCAAGCC-GAGGATCA
255 CCCATGAAACGAGCGTACGGGCACTCAACCGGTCGGAGAGGCAGAAAGTGCAAGCCAG-GGATCA
14459525 GC
319 GC
14459527 CCGATTCCCC
Statistics
Matches: 277, Mismatches: 36, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
353 3 0.01
354 156 0.56
355 118 0.43
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (354 bp):
CGGTCTCGCAACCACAACCCTCGGTCTGACTGAGGATTAGACATGGAATGAACTCCTTATGCCTA
AGCCAACCCATGAAATGAGCGTACGAGCGCTCAACTGACCAGAGAGGCAGAATACGCAAGTCAGG
ATCGGCCCGATCCCCCCTACGTCCTGTCGATCCTGCTACCGTAACCCTCAGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACGAGCGTACGGGCACTCAACCGGTCGGAGAGGCAGAAAGTGCAAGCCAGGGATCAGCAAGGT
CCCCCTCTCCATGCTGCCGATCCCGTTGC
Found at i:14459531 original size:183 final size:184
Alignment explanation
Indices: 14459243--14459598 Score: 488
Period size: 183 Copynumber: 1.9 Consensus size: 184
14459233 CGGGTGGGGA
* * * * *
14459243 TTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCGTGCGAGCGCTCAACT
1 TTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAACC
* * *
14459308 GACCGGAGAGGCAGAATACGCAAGTCGGCAATCGGCCCGA-TCCCCCTACGTGCTGTCGATCCTG
66 GACCGGAGAGGCAGAATACGCAAGCCGGCAATCAGCCCGATTCCCCCTACGTGCTATCGATCCTG
* *
14459372 CTGCCAG-AACCCTT-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
131 CTACC-GCAACCCTTGA-TCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
*
14459426 TTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
1 TTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAACC
** * * *
14459491 GGTCGGAGAGGTAGAA-AGTGCAAGCCGAG-GATCAGCCCGATTCCCCCTACGTGCTATCGATCC
66 GACCGGAGAGGCAGAATA-CGCAAGCCG-GCAATCAGCCCGATTCCCCCTACGTGCTATCGATCC
*
14459554 TGGTACCGCAACCCTTGATCCGGTCTGATCTTAGACTAGGAATGA
129 TGCTACCGCAACCCTTGATCCGGTCTGATCTTAGACTAGGAATGA
14459599 CCTTCGTATG
Statistics
Matches: 151, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
182 1 0.01
183 89 0.59
184 60 0.40
185 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
TTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAACC
GACCGGAGAGGCAGAATACGCAAGCCGGCAATCAGCCCGATTCCCCCTACGTGCTATCGATCCTG
CTACCGCAACCCTTGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
Found at i:14459922 original size:158 final size:155
Alignment explanation
Indices: 14459425--14459926 Score: 504
Period size: 158 Copynumber: 3.2 Consensus size: 155
14459415 ACTCTGTATG
*
14459425 CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * *
14459490 CGGTCGGAGAGGTAGAAAGTGCAAGCCGAGGATCAGCCCGATTCCC-CCTACGTGCTATCGATCC
65 CGATCGGAGAGGCAGAATGCGCAAGCCG-GGATCAGCCCGA-TCCCTCCTACGTGCTGTCGATCC
* * *
14459554 TGGTACCGCAACCCTTGATCCGGTCTGAT
128 TGCTACCGCAACCCTCGATCC-GTCCGAT
* * * * * * * *
14459583 CTTAGACTAGGAATGACCTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCGCTGAGC
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * **
14459648 CAACCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCACGATGCCCTTTTACGTGCTGTC-AGTC
65 CGATCGGAGAGGCAGAATGCGCAAGC-CGGGATCAGCCCGAT-CCCTCCTACGTGCTGTCGA-TC
* * * * * **
14459712 CCGCTACCACAACCCTCGGTCCGGCTGGGG
127 CTGCTACCGCAACCCTCGATCCGTC-CGAT
* * * * *
14459742 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGTGCTTAAC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * *
14459807 CGATCGGAGAGGCAGAATGCGTAACCCAGGGATCAGCCCGATCCCTCCTCCGTGCTGTCGATCCT
65 CGATCGGAGAGGCAGAATGCGCAAGCC-GGGATCAGCCCGATCCCTCCTACGTGCTGTCGATCCT
*
14459872 GCTACCGCAACCCTCGATCTGATCCGAT
129 GCTACCGCAACCCTCGATCCG-TCCGAT
*
14459900 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGAAT-GGAATGAACTCCGTATGC
14459927 TTAGACAGGG
Statistics
Matches: 272, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 150 0.55
159 118 0.43
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (155 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
GATCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCCGATCCCTCCTACGTGCTGTCGATCCTGC
TACCGCAACCCTCGATCCGTCCGAT
Found at i:14460306 original size:26 final size:26
Alignment explanation
Indices: 14460268--14460320 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14460258 CTGGTCTAAT
14460268 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
14460294 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCATATG
14460320 C
1 C
14460321 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:14460384 original size:368 final size:355
Alignment explanation
Indices: 14459718--14460385 Score: 852
Period size: 368 Copynumber: 1.8 Consensus size: 355
14459708 AGTCCCGCTA
* *
14459718 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCCGGCTCGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * ** *
14459783 GAAACGAACATGCGGGTGCTTAACCGATCGGAGAGGCAGAATGCGTAACCCAGGGATCAGCCCGA
66 GAAACGAACATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAACCCAGGGATCAGCCCAA
* * *
14459848 TCCCTCCTCCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCCGATCTTAGATTGGGAA
131 TCCCCCCTCCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCCAATCTTAGAATGGGAA
* * *
14459913 TGAACTCCGTATGCTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGT
196 TGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGT
* ** * * *
14459978 GCTGGTGCTCAACCGGCTGGAGAGGCATAATACGTAAGCCGAGGATCAACCCGGTCCCCCTCTGC
261 GCGGGCACTCAACCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCAACCCGGTCCCCCTCTGC
14460043 ATGCCGTCGATCCCGCTGCCGGTCCTGTTG
326 ATGCCGTCGATCCCGCTGCCGGTCCTGTTG
* *
14460073 CCACAACCTTCAGTCCGGCTCGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCCGGCTCGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * ** ** * **
14460138 GAAATGAGCATGCGGGCGCTCGGCCGATCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCCCAA
66 GAAACGAACATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAACCCAGGGATCAGCCCAA
* * * * *
14460203 TCCCCCCTTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTGTCGCAACCCTTGGTCTGGTCTAAT
131 TCCCCCC-TCCGTGCTGTCGA---T-C--CT-G--CTAC---CGCAACCCTCGATCTGATCCAAT
*
14460268 CTTAGAATGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
183 CTTAGAATGGGAATGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
14460333 A-AGAAACGAGCGTGCGGGCACTTAGCCGACCGGAGAGGCAGAATGCGTAAGCC
248 ATA-AAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATACGTAAGCC
14460386 AGGGATTAGC
Statistics
Matches: 260, Mismatches: 39, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
355 118 0.45
356 12 0.05
359 1 0.00
360 1 0.00
362 2 0.01
363 1 0.00
365 4 0.02
367 1 0.00
368 120 0.46
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (355 bp):
CCACAACCCTCAGTCCGGCTCGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAACATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAACCCAGGGATCAGCCCAA
TCCCCCCTCCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCCAATCTTAGAATGGGAA
TGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGT
GCGGGCACTCAACCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCAACCCGGTCCCCCTCTGC
ATGCCGTCGATCCCGCTGCCGGTCCTGTTG
Found at i:14460588 original size:159 final size:159
Alignment explanation
Indices: 14460293--14460796 Score: 409
Period size: 159 Copynumber: 3.2 Consensus size: 159
14460283 AACTCCATAT
* * *
14460293 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTGAG
* * *
14460358 CCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATTAGCCCAGTCCCCCCCTGCGTGCTATTGATC
66 CCGACCGGAGAGGCAGAACGCGCAAGCCAGGGATTAGCCCAGTCCCCCCCTGCGTGCTATCGATC
**
14460423 CTACTGCTGCAACCCTCGATCCGG-TCCGA
131 CTACTGCCACAACCCTCGATCCGGCT-CGA
* * * *
14460452 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATTAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTGA
* * * * * * *
14460516 GCC-AGCCGGATAGGCATAACGGGCAAGTC-GAGG-TTCGGCCC-GATCCCCCTCTGCGTGCTGT
65 GCCGA-CCGGAGAGGCAGAACGCGCAAGCCAG-GGATT-AGCCCAG-TCCCCCCCTGCGTGCTAT
* * * *
14460577 CGGT-CTCACTGCCACAACCCTCGGTCCGGCTGGG
126 CGATCCT-ACTGCCACAACCCTCGATCCGGCTCGA
* * * * * ** *
14460611 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACTCACGAAATGGGCATGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTGAG
** * * * * * ** *
14460676 TGGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAG-CCTGAT-CCCCCCTGTATGCTGTCGAT
66 CCGACCGGAGAGGCAGAACGCGCAAGCCAGGGATTAGCCCAG-TCCCCCCCTGCGTGCTATCGAT
* * * * *
14460739 CCTGCTACCGCAACCCTCGGTCCAG-TCTGA
130 CCTACTGCCACAACCCTCGATCCGGCTC-GA
* *
14460769 TCTTAGAC-TAGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14460797 TTAGACTAGG
Statistics
Matches: 273, Mismatches: 57, Indels: 31
0.76 0.16 0.09
Matches are distributed among these distances:
157 2 0.01
158 68 0.25
159 199 0.73
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTGAG
CCGACCGGAGAGGCAGAACGCGCAAGCCAGGGATTAGCCCAGTCCCCCCCTGCGTGCTATCGATC
CTACTGCCACAACCCTCGATCCGGCTCGA
Found at i:14460742 original size:870 final size:853
Alignment explanation
Indices: 14458568--14460855 Score: 2809
Period size: 855 Copynumber: 2.7 Consensus size: 853
14458558 TCCGGCTGAG
* * *
14458568 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14458633 CC-AGCCGGAGAGGCAGAATGCACAAGTCGAGGA-TCGACCCATTCCCCCCTTGCGTGTTGTCGA
66 CCGA-CCGGAGAGGCAGAATGCGCAAGCCGAGGATTAG-CCCAGTCCCCCCCTGCGTGCTATCGA
* *
14458696 TCCTGCTGCCGCAACCCTC-AGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCATAAG
129 TCCTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** *
14458760 TCAACCCACGAAATGAGCGTGCGGGCGTTGAACTAGCCAAAGAGGCATAATGTGCAAGCCGAGGA
193 TCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGCAAG-CGAGGA
* * * * *
14458825 TCGGCCTGGTCCCCCTCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCTGACTGAGGCTT
257 TCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCCGGCTGGGGCTT
* * *
14458890 AGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGTGCTCAGCTGG
322 AGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAG-TGG
** * * * * * *
14458955 CTAGAGAGGTAGAATGCGCAAGTCAAGGATCGGCCCGATCCCCCCTGCGTCCTGTCGATCTTGCT
386 CCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCT
* * * *
14459020 ATCGTAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
451 ACCGCAACCCTCGA-T-CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGGA
* *
14459084 TGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGTCGGAGAGGC
514 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAACCGGTCGGAGAGGC
** * * * *
14459149 ATAATGTGTAAGCCAGGGATCAGCAAGGTCCCCCTCTCCATGCTGCCGATCCCGTTGCCGGTCTT
579 ATAATACGTAAGCCAGGGATCAACAAGGTCCCCCTCTCCATGCCGCCGATCCCGCTGCCGGTCCT
* * * * *
14459214 GCAACCACAACCCTCGGTTCGGGTGGGGATTAGACATGGAATGAACTCTGTATGCCTAAGCTAAC
644 GCAACCACAACCCTCAGTCCGGCTCGGGATTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * *
14459279 CCATGAAATGAGCGTGCGAGCGCTCAACTGACCGGAGAGGCAGAATACGCAAGTCGGCAATCGGC
709 CCACGAAATGAGCATGCGAGCGCTCAACCGACCGGAGAGGCAGAATACACAAGTCGGCAATCGGC
* * *
14459344 CCGATCCCCCTACGTGCTGTCGATCCTGCTGCCAGAACCCTTAGTCCGGTCTGATCTTAGACTGG
774 CCAATCCCCCTACGTGCTGTCGATCCTGCTGCCAGAACCCTTAGTCCGGTCTAATCTTAGAATGG
**
14459409 GAATGAACTCTGTAT
839 GAATGAACTCCATAT
* *
14459424 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * * *
14459489 CCGGTCGGAGAGGTAGAAAGTGCAAGCCGAGGATCAGCCC-GAT-TCCCCCTACGTGCTATCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATTAGCCCAG-TCCCCCCCTGCGTGCTATCGAT
* * * * * * *
14459552 CCTGGTACCGCAACCCTTGATCCGGTCTGATCTTAGACTAGGAATGACCTTCGTATGCCTAAGTC
130 CCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
14459617 AACCCATGAAATGAGCGTGTGGGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAGCTGGGGATC
195 AACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGCAAGC-GAGGATC
* * * * * * * *
14459682 AGCACGATGCCCTTTTACGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAG
259 GGCCCGATCCCCCTCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAG
* * ** * ** **
14459747 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGTGCTTAACCGATC
324 ACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGC-TCAGTGGCC
* * * *
14459812 GGAGAGGCAGAATGCGTAACCCAGGGATCAGCCCGATCCCTCCTCCGTGCTGTCGATCCTGCTAC
388 GGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTAC
*
14459877 CGCAACCCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAGGGGATGA
453 CGCAACCCTCGATC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGGATGA
* * * **
14459942 ACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCTGGTGCTCAACCGG-CTGGAGAGGCAT
517 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAACCGGTC-GGAGAGGCAT
** * *
14460006 AATACGTAAGCC-GAGGATCAACCCGGTCCCCCTCTGCATGCCGTCGATCCCGCTGCCGGTCCTG
581 AATACGTAAGCCAG-GGATCAACAAGGTCCCCCTCTCCATGCCGCCGATCCCGCTGCCGGTCCTG
*** * *
14460070 TTGCCACAACCTTCAGTCCGGCTCGGGCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAAC
645 CAACCACAACCCTCAGTCCGGCTCGGGATTAGACATGGAATGAACTCT-GTATGCCTAAGCCAAC
* ** * * ** *
14460134 CCACGAAATGAGCATGCGGGCGCTCGGCCGATCGGAGAGGCAGAATGCACAAGTCGGGGATTGGC
709 CCACGAAATGAGCATGCGAGCGCTCAACCGACCGGAGAGGCAGAATACACAAGTCGGCAATCGGC
* * *
14460199 CCAATCCCCCCTTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTGTCGCAACCCTTGGTCTGGTC
774 CCAAT-CCCCC-TACGTGCTGTCGAT-C--CTGCT-G-CC-A-----G-AACCCTTAGTCCGGTC
14460264 TAATCTTAGAATGGGAATGAACTCCATAT
825 TAATCTTAGAATGGGAATGAACTCCATAT
* * *
14460293 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
14460358 CCGACCGGAGAGGCAGAATGCGTAAGCC-AGGGATTAGCCCAGTCCCCCCCTGCGTGCTATTGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATTAGCCCAGTCCCCCCCTGCGTGCTATCGAT
* *
14460422 CCTACTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
130 CCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
14460487 AACCCACGAAATTAGCGTGCGGGCGCTGAGCCAGCCGGATAGGCATAACGGGCAAGTCGAGGTTC
195 AACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGCAAG-CGAGGATC
* *
14460552 GGCCCGATCCCCCTCTGCGTGCTGTCGGTCTCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAG
259 GGCCCGATCCCCCTCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAG
* *
14460617 ACATGGAATGAACTCCTTATGCCTAAGCCAACTCACGAAATGGGCATGCAGGTGCTCAGTGGGCC
324 ACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAGT-GGCC
* * **
14460682 GGAGAGGCAGAATGCACAAGCCAGGGATCAGCCTGATCCCCCCTGTATGCTGTCGATCCTGCTAC
388 GGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTAC
* * * * *
14460747 CGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTA-GGGATG
453 CGCAACCCTCGATCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-AGGGGATG
*
14460811 AACTCCGTATGCC-AAGTCAGCCCATGAAACGAGCGTACGGGCACT
516 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACT
14460856 TAGCCGACCA
Statistics
Matches: 1198, Mismatches: 202, Indels: 51
0.83 0.14 0.04
Matches are distributed among these distances:
854 5 0.00
855 549 0.46
856 98 0.08
857 14 0.01
858 1 0.00
860 5 0.00
861 1 0.00
862 2 0.00
863 1 0.00
868 2 0.00
869 160 0.13
870 358 0.30
871 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (853 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATTAGCCCAGTCCCCCCCTGCGTGCTATCGATC
CTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGCAAGCGAGGATCGG
CCCGATCCCCCTCTGCGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGAC
ATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAGTGGCCGGA
GAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGC
AACCCTCGATCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGGATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAACCGGTCGGAGAGGCATAATAC
GTAAGCCAGGGATCAACAAGGTCCCCCTCTCCATGCCGCCGATCCCGCTGCCGGTCCTGCAACCA
CAACCCTCAGTCCGGCTCGGGATTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAA
ATGAGCATGCGAGCGCTCAACCGACCGGAGAGGCAGAATACACAAGTCGGCAATCGGCCCAATCC
CCCTACGTGCTGTCGATCCTGCTGCCAGAACCCTTAGTCCGGTCTAATCTTAGAATGGGAATGAA
CTCCATAT
Found at i:14460806 original size:26 final size:26
Alignment explanation
Indices: 14460770--14460822 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14460760 CCAGTCTGAT
*
14460770 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14460796 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14460822 C
1 C
14460823 CAAGTCAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14461527 original size:26 final size:26
Alignment explanation
Indices: 14461489--14461541 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14461479 GGCTCAAAAT
14461489 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14461515 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
14461541 C
1 C
14461542 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14461869 original size:159 final size:157
Alignment explanation
Indices: 14461514--14462087 Score: 540
Period size: 158 Copynumber: 3.6 Consensus size: 157
14461504 AACTCCATAT
* * * * * * *
14461514 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
* * * * *
14461579 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTACGTGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTACGTGCTACCGATCC
* * ** * *
14461644 TGCTACTGCAACCCTCGGTCTGGTCTGA
131 CGCTGCCACAACCCTCGGTCT-GACTGG
* * ** * * * *
14461672 TCTTAGAC-TGGGAATGAACTCCGTATGTATAAGTCAACCCATGAAACAAGTGTGTAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCA
* ** * * * *
14461736 GCCGGCCAAAGAGGCATAATGCGCAAGCGGGGGATTGGCTTGGTCCCCCTCTACGTGCTGCCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCC-CTACGTGCTACCGAT
14461801 CCCGCTGCCACAACCCTCGGTCTGACTGGG
129 CCCGCTGCCACAACCCTCGGTCTGACT-GG
* * * *
14461831 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
* * * * * * * *
14461896 TCGGTCGGAGAGGCAGAATGCACAAGCCGAGGA-TCGCCCGGTCCCTCCGACGTGCTACCGATCT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTACGTGCTACCGATCC
* * * *
14461960 CGCTGCCACAACCCTTGGCCCGGCTAGG
131 CGCTGCCACAACCCTCGGTCTGACT-GG
* *** * *
14461988 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAATGGGCGTGCAGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTG-TGGGCGCTCA
** * * *
14462053 GCCAATTGGAGAGGCAAAATGCGCAAGCCAGGGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT
14462088 CGGCACGGTC
Statistics
Matches: 336, Mismatches: 74, Indels: 11
0.80 0.18 0.03
Matches are distributed among these distances:
157 89 0.26
158 137 0.41
159 109 0.32
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTACGTGCTACCGATCC
CGCTGCCACAACCCTCGGTCTGACTGG
Found at i:14462532 original size:26 final size:26
Alignment explanation
Indices: 14462503--14462555 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14462493 CCAGTTCGAT
*
14462503 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14462529 CTTAGACATGGAATGAAGTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14462555 C
1 C
14462556 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14462901 original size:159 final size:158
Alignment explanation
Indices: 14462529--14463023 Score: 428
Period size: 158 Copynumber: 3.1 Consensus size: 158
14462519 ACTTCGTATG
* *
14462529 CTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
14462594 CGACTGGAAAGGCAGAATGCACAAGCCAGAGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCT
66 CGACTCGAAAGGCAGAATGCACAAGCCAGAGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCT
*
14462659 ACTGCCGCAACCCTCGGTCCGGTCCGAT
131 ACTGCCACAACCCTCGGTCCGGTCCGAT
** ** ** *
14462687 CTTAGAC-TACAAATGAACTTTGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * ** *
14462751 CCGAC-CGAAGAGGCATAATGTGCAAGCCA-AGGATCAGCCTGATCCCCCTCTGTGTGTTGTC-A
65 CCGACTCGAA-AGGCAGAATGCACAAGCCAGA-GATCAGCCCGATCCCCC-CTACGTGCTGTCGA
* * * * ** *
14462813 GTCCTGCTGCCATAACCCTCTGTCCGATTGGGGT
127 -TCCTACTGCCACAACCCTCGGTCCG-GTCCGAT
* * * * * *
14462847 -TTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGGGTGTGCGGGAGCTC-GA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
** * * * * ** * ** ** *
14462910 CCGGTTGGAGAGGTAGAATGCGCAAGCTGGGGATTGGCCCGATCCCCCCTGTGTGCTGCCGATCC
65 CCGACTCGAAAGGCAGAATGCACAAGCCAGAGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
* * * *
14462975 TACTGTCGCAACCCTCGGTTCGGTCTGAT
130 TACTGCCACAACCCTCGGTCCGGTCCGAT
14463004 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
14463024 TATATGCTTA
Statistics
Matches: 261, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 9 0.03
158 138 0.53
159 108 0.41
160 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACTCGAAAGGCAGAATGCACAAGCCAGAGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCT
ACTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:14463055 original size:26 final size:26
Alignment explanation
Indices: 14463004--14463056 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14462994 TCGGTCTGAT
*
14463004 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14463030 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14463056 C
1 C
14463057 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14470099 original size:158 final size:157
Alignment explanation
Indices: 14469594--14470103 Score: 530
Period size: 158 Copynumber: 3.2 Consensus size: 157
14469584 AATGAATCTG
* ** * *
14469594 TATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCTGGAGAGGTAGAATGCAC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGTAGAATGCGC
* *
14469659 AAGTC-AGGGATCG-GTCCGATCCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCGAT-C
66 AAGTCGA-GGATCGACT-CGGTCCCCCCTGCGTGCTA-CGATCCTACTACCGCAACCCTCGATCC
* *
14469721 CAGTCCGATCTTAAACTGGGAATGAACTCCG
128 CA-TCCGATCTTAGACTGGGAATGAACTCCA
* * ** * * * * *
14469752 TATGCATAAGTCAACCCATTAAACGAGCGTGCGGGTGCTGAGCCGGTCGAAGAGGCATAATGCGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGTAGAATGCGC
* * * * * * *
14469817 AAGTCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGCCAGT-CTCGCTACCACAACCTTCGATCC
66 AAGTCGAGGATCGACTCGGTCCCCC-CTGCGTGCTACGA-TCCT-ACTACCGCAACCCTCGATCC
* * ** *
14469881 GA-CTGGGGCTTAGACAT-GGAATGAACTCCC
128 CATC-CGATCTTAGAC-TGGGAATGAACTCCA
* * * *
14469911 TACGCCTAAGCCAACCCACAAAAC-AGGCGTGCGGGTGCTCAACTGGTTGGAGAGGTAGAATGCG
1 TATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCAGCCGGTTGGAGAGGTAGAATGCG
* *
14469975 CAAGTCGAGGATCGACTCGGTCCCCCCTGCGTGCTACGGATCCTACTGCCGCAACCCTCGGTCCC
65 CAAGTCGAGGATCGACTCGGTCCCCCCTGCGTGCTAC-GATCCTACTACCGCAACCCTCGATCCC
14470040 ATCCGATCTTAGACTGGGAATGAACTCCA
129 ATCCGATCTTAGACTGGGAATGAACTCCA
* *
14470069 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
14470104 CACTCAGTGG
Statistics
Matches: 279, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 151 0.54
159 124 0.44
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGTAGAATGCGC
AAGTCGAGGATCGACTCGGTCCCCCCTGCGTGCTACGATCCTACTACCGCAACCCTCGATCCCAT
CCGATCTTAGACTGGGAATGAACTCCA
Found at i:14470942 original size:26 final size:26
Alignment explanation
Indices: 14470901--14470951 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14470891 CCGGTCTGAT
14470901 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTTCGTATA
14470927 CTTAGACTGAGG-ATGAACTTCGTAT
1 CTTAGACTG-GGAATGAACTTCGTAT
14470952 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATA
Found at i:14472514 original size:26 final size:26
Alignment explanation
Indices: 14472476--14472526 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14472466 CCATTCTGAT
14472476 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14472502 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
14472527 TTCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14473226 original size:26 final size:26
Alignment explanation
Indices: 14473187--14473239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14473177 GGATCAAAAT
*
14473187 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
14473213 CTTAGACATG-GAATCAACTCCGTATG
1 CTTAGAC-TGAGAATCAACTCCGTATG
14473239 C
1 C
14473240 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:14473614 original size:159 final size:158
Alignment explanation
Indices: 14473212--14473643 Score: 400
Period size: 159 Copynumber: 2.7 Consensus size: 158
14473202 AACTCCGTAT
* * * * *
14473212 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCAATGGAACGAGCATGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * **
14473277 -CTGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGTTGTCGATC
66 TC-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATC
*** ** ** * * * *
14473341 TTGCTGTCTTAACCCTTAGTCTGATCTGA
130 CCACTACCACAACCCTCAATCCGAGCTGA
* * * ** * * ** * * *
14473370 TCTTAGATAGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGTGTGCAAGCGTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
** * * * *
14473435 TCGGGCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTTCATGCTACCGGTC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACATGCTACCGATC
*
14473500 CCACTACCACAACCCTCAATCCG-GCTAGG
130 CCACTACCACAACCCTCAATCCGAGCT-GA
*
14473529 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
14473594 TCGACCGAAAAGGTAGAATGCGAAAGCTGGGGATCGGCCCGATCCCCCCT
66 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCT
14473644 GCGTGCTGTC
Statistics
Matches: 208, Mismatches: 63, Indels: 6
0.75 0.23 0.02
Matches are distributed among these distances:
158 93 0.45
159 115 0.55
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATCC
CACTACCACAACCCTCAATCCGAGCTGA
Found at i:14476785 original size:26 final size:26
Alignment explanation
Indices: 14476756--14476808 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14476746 CCGGTCTGAT
*
14476756 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
14476782 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
14476808 C
1 C
14476809 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:14477258 original size:158 final size:159
Alignment explanation
Indices: 14476903--14477274 Score: 387
Period size: 158 Copynumber: 2.4 Consensus size: 159
14476893 TGTGTACTAT
* *
14476903 CGATCCTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
1 CGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCCTATGCCTA
* * * * * * * *
14476968 AGTCAACCCACGAAACAAGCGTTCAGGCGCTAAGTCGGTCGGAGAGGCATAATGCGCAAGCTTGG
66 AGCCAACCCACGAAACAAGCATGCAGGCGATAAGCCGGCCGGAGAGGCAGAATGCGCAAGCTCGG
* *** * *
14477033 GATCGACTTGGTCCCCTCTGCGTGCTATC
131 AATCGACCCAGTCCCCCCTGCGTGCTAGC
* * ** * * **
14477062 GGTTCC-GCTACTACAACCCTCGATCT-GACTTGGGCTTAGAC-ATGGAATGAACTCCCTATGCC
1 CGATCCTGCTACCGCAACCCTCGGTCTGGTC-TGATCTTAGACTA-GGAATGAACTCCCTATGCC
*** * *
14477124 TAAGCCAACCCACGAAATGGGCATGCAGGTGATCAA-CCGGCCGGAGAGGCAGAATGTGCAAGC-
64 TAAGCCAACCCACGAAACAAGCATGCAGGCGAT-AAGCCGGCCGGAGAGGCAGAATGCGCAAGCT
14477187 CGAGAATCGACCCAGTCCCCCCTGCGTGCT-GC
128 CG-GAATCGACCCAGTCCCCCCTGCGTGCTAGC
* *
14477219 CGATCCTGCTACCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCC
1 CGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCC
14477275 ATATACTTAG
Statistics
Matches: 167, Mismatches: 39, Indels: 15
0.76 0.18 0.07
Matches are distributed among these distances:
157 9 0.05
158 150 0.90
159 8 0.05
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.22
Consensus pattern (159 bp):
CGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACAAGCATGCAGGCGATAAGCCGGCCGGAGAGGCAGAATGCGCAAGCTCGG
AATCGACCCAGTCCCCCCTGCGTGCTAGC
Found at i:14477408 original size:184 final size:182
Alignment explanation
Indices: 14477095--14477771 Score: 592
Period size: 184 Copynumber: 3.6 Consensus size: 182
14477085 TCTGACTTGG
* * * * * * * *
14477095 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCAGGTGATCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
14477159 ACCGGCCGGAGAGGCAGAATGTGCAAGCCGAGAATCGACCC-AGTCCCCCCTGCGTGCTGCCGAT
65 ACCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCG-CCCGA-TCCCCCTTGC-TACTACCGAT
*
14477223 CCTGCTACCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCATAT
127 CCTGCTACCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
14477279 ACTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCCCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
14477344 TCGGCCGGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGATCCCCCTTGCATACTACCGATCC
66 CCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATC-GCCCGATCCCCCTTGC-TACTACCGATCC
* * * * * *
14477409 TGCTACCACAACCCTTGGTCTGGT-TCAATCTTAGACTAGGAATGCACTCCGTAT
129 TGCTACCGCAACCCTCGGTTTGGTCT-GATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
14477463 GCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTCAA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
14477528 CCGACCGAAGAGGCT-GAATGCGCAAGCCAGGGATTGGCCCGATCCCCCTCTGCTACTGTCGATC
66 CCGGCCGAAGAGG-TAGAATGCGCAAGCCGGGGA-TCGCCCGATCCCCCT-TGCTAC--T--A-C
* * * *
14477592 CTGCTACTGGTCCTACTGCCGCAACCCTCGG-TCGAGTCTGATCTTAGACTGGGAATGAACTTCG
123 C-G--A----TCCTGCTACCGCAACCCTCGGTTTG-GTCTGATCTTAGACTGGGAATGAACTCCG
14477656 TAT
180 TAT
* * * * * *
14477659 GCTTAAACAT-GGAATGTACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * *
14477723 GTCGGCCAAAGAGGTAGAATGTGCAAGTCAGGGATCGACCCGATCCCCC
65 ACCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCG-CCCGATCCCCC
14477772 CCTTCGTGCT
Statistics
Matches: 398, Mismatches: 71, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
183 2 0.01
184 246 0.62
185 7 0.02
186 1 0.00
188 1 0.00
189 2 0.01
190 1 0.00
192 1 0.00
195 4 0.01
196 131 0.33
197 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (182 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCGCCCGATCCCCCTTGCTACTACCGATCCTG
CTACCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14477767 original size:196 final size:197
Alignment explanation
Indices: 14477436--14477793 Score: 452
Period size: 196 Copynumber: 1.8 Consensus size: 197
14477426 GTCTGGTTCA
* * * *
14477436 ATCTTAGACTAGGAATGCACTCCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTGGGAATAAACTCCGTATGCCTAAGCCAAC
* * * *
14477501 CCACAAAACAAGCGTGCGGGCACTCAACCGACCGAAGAGGCTGAATGCGCAAGCCAGGGATTGGC
66 CCACAAAACAAGCGTACGGGCACTCAACCGACCAAAGAGGCTGAATGCGCAAGCCAGGGATCGAC
*
14477566 CCGATCCCCCTCTGC-TACTGTCGATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTCGAGTC
131 CCGATCCCCCCCTGCGTACTGTCGATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTCGAGTC
14477630 TG
196 TG
* * ** *
14477632 ATCTTAGACTGGGAATGAACTTCGTATGCTTAAACAT-GGAATGTACTCTGTATGCCTAAGCCAA
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAAAC-TGGGAATAAACTCCGTATGCCTAAGCCAA
** * * ** * * *
14477696 CCCATGAAACGAGCGTACGGGCGCTCAGTCGGCCAAAGAGG-TAGAATGTGCAAGTCAGGGATCG
65 CCCACAAAACAAGCGTACGGGCACTCAACCGACCAAAGAGGCT-GAATGCGCAAGCCAGGGATCG
* *
14477760 ACCCGATCCCCCCCTTCGTGCTGTCGATCCTGCT
129 ACCCGATCCCCCCCTGCGTACTGTCGATCCTGCT
14477794 GTCGTAACCC
Statistics
Matches: 134, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
195 1 0.01
196 117 0.87
197 16 0.12
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (197 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTGGGAATAAACTCCGTATGCCTAAGCCAAC
CCACAAAACAAGCGTACGGGCACTCAACCGACCAAAGAGGCTGAATGCGCAAGCCAGGGATCGAC
CCGATCCCCCCCTGCGTACTGTCGATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTCGAGTC
TG
Found at i:14478172 original size:26 final size:26
Alignment explanation
Indices: 14478136--14478188 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14478126 CCGGTCTGAT
14478136 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
14478162 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14478188 C
1 C
14478189 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14480554 original size:158 final size:159
Alignment explanation
Indices: 14480258--14480622 Score: 432
Period size: 158 Copynumber: 2.3 Consensus size: 159
14480248 TACCGGCCCT
* * * * *
14480258 GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTAGAGCTTAGACATGGAATGAACTTCGTATGACTAAGCCAAC
* * *
14480323 CCATGAAACGAGCGTACGGGCGCTTAGCCGACCGGAGAGGTAGAATGCGCAAGCTGGGGACCGAC
66 CCATGAAACGAGCGTACGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGACCGAC
* * *
14480388 CCGATCCCCC-CTGCGTGCTGTCGATCTT
131 CCAATCCCCCTCTACGTGCTGTCGATCTC
* ** * * * *
14480416 GTTGCCGTAACCCTCGGTCCGATCT-GATCTTAGAC-TGGAAATGAACTTCGTATGCCTAAGTCA
1 GCTGCCACAACCCTCGATCCGA-CTAGAGCTTAGACATGG-AATGAACTTCGTATGACTAAGCCA
** * *
14480479 ACCCATGAAACGAGCGTACGGGCGCTAAGCCGGTCGGAGAGGCATAATGCGCAAG-TCGAGGATC
64 ACCCATGAAACGAGCGTACGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAGCT-GAGGACC
* * * *
14480543 GGCTCAATCCCCCTCTATGTGCTGTCGGTCTC
128 GACCCAATCCCCCTCTACGTGCTGTCGATCTC
*
14480575 GCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTT
1 GCTGCCACAACCCTCGATCCGACTAGAGCTTAGACATGGAATGAACTT
14480623 TAGACATGCA
Statistics
Matches: 172, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
157 4 0.02
158 114 0.66
159 51 0.30
160 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTGCCACAACCCTCGATCCGACTAGAGCTTAGACATGGAATGAACTTCGTATGACTAAGCCAAC
CCATGAAACGAGCGTACGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGACCGAC
CCAATCCCCCTCTACGTGCTGTCGATCTC
Found at i:14480627 original size:18 final size:18
Alignment explanation
Indices: 14480604--14480639 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14480594 CGACTAGGGC
*
14480604 TTAGACATGGAATGAACT
1 TTAGACATGCAATGAACT
14480622 TTAGACATGCAATGAACT
1 TTAGACATGCAATGAACT
14480640 CCGTATGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (18 bp):
TTAGACATGCAATGAACT
Found at i:14481842 original size:158 final size:158
Alignment explanation
Indices: 14481343--14481842 Score: 393
Period size: 158 Copynumber: 3.2 Consensus size: 158
14481333 ACTTTGTATG
* * * * * * *
14481343 CTTAGACAT-GGAATGAAC-CCGTACGCCTAAGCCAACCCACGAAAAGAGCGTACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * * * * *
14481406 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATGGGCTCGGACCCCCCTGCATGCTGTCAATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTACGTGCTGCCGATCC
** ** ** **
14481471 TGCTACTGCAACCCTTAGTCTGGTCCAAT
130 CACTACCACAACCCTCGGTCTGGTCTGAT
* * * * * * *
14481500 CTTAGACTGGGAATGAACTCTGTATGCGTAAGTCAACCCATGAAACGAGTGTGCGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAAC
* * * ** *
14481565 CGGCTGAAGAGGCATAATGTGCAAGCCAGGGATCGGCCCGGTCCCCTCTGTGTGCTGCCGGTCCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTACGTGCTGCCGATCCC
**
14481630 ACTACCACAACCCTCGGTCCAG-CTG-T
131 ACTACCACAACCCTCGGTCTGGTCTGAT
** *
14481656 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCGACCCAAGAAAC-AGGCGTGCGGGCGCT
1 --CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGA-GCGTGCGGGCGCT
* * * * * * * **
14481719 CAATCGGCCGGAGAGGTAGAATGCGTAAGTC-GAGGATCGGCTCGGTCCCCTTTACGTTTTGCCG
62 CAACCGGCCGAAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCTCTACGTGCTGCCG
* **
14481783 ATCCTACTACCGTAACCCTCGGTCTGGTCTGAT
126 ATCCCACTACCACAACCCTCGGTCTGGTCTGAT
14481816 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
14481843 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 68, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
156 2 0.01
157 20 0.08
158 238 0.90
159 4 0.02
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTACGTGCTGCCGATCCC
ACTACCACAACCCTCGGTCTGGTCTGAT
Found at i:14482791 original size:158 final size:158
Alignment explanation
Indices: 14482380--14482792 Score: 397
Period size: 158 Copynumber: 2.6 Consensus size: 158
14482370 CTCTGTATGG
* *** * *
14482380 TTAGACGTGGAATGAACTTGGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCA-TC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTC
* * * * *
14482444 AGGCCGGAGAGGCAG-ATGCGCAAGCCGGGGATCTTTTCGGTCCCCCCTGCGTGCTATCGATCCT
66 -GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCTGTCCGATCCCCCCTGCGTGCTACCGATCCC
* *
14482508 GCTGCCGCAACCCTCGATCTGGTCCAATC
130 GCTGCCACAACCCTCGATCTGGTCCAAGC
* * * * * * * *
14482537 TTAGA-TTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGTTAAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
** * * * *
14482601 CGATCGGAGAGGCATAATGCGCAAGCCAGGGAT-TGGTCCGATCCCCCTTTGCGTGCTACCGGTC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCT-GTCCGATCCCCC-CTGCGTGCTACCGATC
* ****
14482665 CCGCTG-CACAACCCTCTGTTC-GGTTGGGGC
128 CCGCTGCCACAACCCTC-GATCTGGTCCAAGC
* * * * *
14482695 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTC
*
14482760 GGCCGGAGAGGCAGAATGCGCAAGCTGGGGATC
66 GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
14482793 GACCTGGTAC
Statistics
Matches: 200, Mismatches: 48, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 61 0.31
158 116 0.58
159 22 0.11
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCTGTCCGATCCCCCCTGCGTGCTACCGATCCCG
CTGCCACAACCCTCGATCTGGTCCAAGC
Found at i:14482881 original size:26 final size:26
Alignment explanation
Indices: 14482852--14482904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14482842 CCGGTCTGAT
*
14482852 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ACGAACTCCGTATG
14482878 CTTAGACTGGAGACGAACTCCGTATG
1 CTTAGACTGGAGACGAACTCCGTATG
14482904 C
1 C
14482905 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAGACGAACTCCGTATG
Found at i:14484108 original size:26 final size:26
Alignment explanation
Indices: 14484072--14484124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14484062 CCAGTCCAAT
*
14484072 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14484098 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14484124 C
1 C
14484125 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14484181 original size:13 final size:13
Alignment explanation
Indices: 14484163--14484188 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14484153 GGCGCTCAGT
14484163 CGGTCGGAGAGGC
1 CGGTCGGAGAGGC
14484176 CGGTCGGAGAGGC
1 CGGTCGGAGAGGC
14484189 ATAATACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.54, T:0.08
Consensus pattern (13 bp):
CGGTCGGAGAGGC
Found at i:14485324 original size:893 final size:881
Alignment explanation
Indices: 14483568--14485792 Score: 2347
Period size: 892 Copynumber: 2.5 Consensus size: 881
14483558 GTGGCTCAAA
* * * * * *
14483568 ATCTTAGATTGGGATTGAAGTCTGTATGCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
14483633 CCACGAAACGAGTGTGC-GAGCGCTC-AGCAGGCCA-GAGAGGCAAAATACGCAAGCC-AGGGAT
66 CCATGAAACAAGCGTACAG-GAGCTCAACCA-G-CAGGAGAGGCAGAATGCGCAAGCCGA-GGAT
* ** * * * **
14483694 CGACCC-AGTCTGC-CCCTGTGTGCTGTCAATCCTACGGTA--GCAACCCTCGATCTGGTCCGAT
127 CGACCCGA-TC-CCACCCTACGTGCTATCAATCCT--GCTACCGTAACCCTCGATCCAGTCCGAT
*** * * * ** * * *
14483755 CTTAGACTGGGAATGAACTTTGTATGCATAAGTTAACCCACAAAATGAGCGTGCGTGCGCTGCA-
188 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCACTG-AG
* ** * * * * ** ** *
14483819 CTGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCG-GTCCGGTCCCCCTT-TGTGTGCTGTCGG
252 CCGACCGGAGAGACATAATACGCAAGCCGGGGATCGACT-CGGT-CCCCTTCTGCATGCTACCAG
**
14483882 TCCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTACCTATACCTAAGC
315 TCCCGCCGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACT-CCTATACCTAAGC
* * ** * **
14483947 CAACCCACGAAACGGGCATACGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCTTGGGAT
379 CAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGAT
* * * * *
14484012 CGGTCC-GGTCCCTCCTGCGTGCTATCAATCCTGTTGCCACAACCCTTGGTCCAGTCCAATCTTA
444 CGG-CCTAGTCCCTCCTGCGTGCTATCAATCCTGCTACCACAACCCTCGATCCAGTCCAATCTTA
* ** * * *
14484076 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCTACCCACGA
508 GACTGGGAATGAACTCCATATGCTTAGACTACGGATGAACTCCAGATCCCTAAGTCAACCCACGA
* * *
14484141 AATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCGGTCGGAGAGGCATAATACACAAGCTGGG
573 AATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCGGCCAGAGAGGCATAATACACAAGCCGGG
* * * * *
14484206 GATCAGCCCGATCCCCTTCTGCGTGCTGCCAATCCACTGTCGATCCTGGTGCCACAACCCTCGGT
638 GATCAGCCCGATCCCCCTCTGCATGCTACCAATCCACTGGCGATCCTGCTGCCACAACCCTCGGT
14484271 CTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCATGAAATGAGAGTACG
703 CTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCATGAAATGAGAGTACG
* * * * * *
14484336 GGCGCTCAGTCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCAGCTCAGTCCTCGCCTGCGTG
768 GACGCTCAGCCGACCGGAGAGGTAGAATGCACAAGCCAGGGATCAGCCCAGTCCTCCCCTGCGTG
* **
14484401 CTACCGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGATCCTGTCTG
833 CTACCGATCCTGCTGCTGGTCCTACTGCCGCAACCCTCGATCCAATCTG
* *
14484450 ATCTTAGACTGTGAATGAAGTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
14484515 CGATGAAACAAGCGTACGGGTGCTCAACC-GATAGGAGAGGCAGAATGTGTAAGCCGAGGATCGA
66 CCATGAAACAAGCGTACAGGAGCTCAACCAG-CAGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* * * * * *
14484579 CCTGATCCCACCCTATGTTCTATCGATCTTGCTACCGTAACTCTCGATCCAGTCCTGATCTTAGA
130 CCCGATCCCACCCTACGTGCTATCAATCCTGCTACCGTAACCCTCGATCCAGTCC-GATCTTAGA
* * * * * * *
14484644 CTGGGAATGAACTCCGTAT-CGTTAAGTCAACCCACGAAACAAGCGTGCGGGCCCTGAGCCGGCG
194 CTGGGAATGAACTCCATATGC-CTAAGTCAACCCACGAAACAAGCGTACGAGCACTGAGCCGACC
* * *
14484708 GGAGAGCCATAATACGCAAGCCGGGGATC-AGCTCGGTCCCCTTCTGCATGTTGCCAGTCCCGCT
258 GGAGAGACATAATACGCAAGCCGGGGATCGA-CTCGGTCCCCTTCTGCATGCTACCAGTCCCGC-
* * * * * *
14484772 GCATGCCACAACCCTCAGTCCGACTGGGGCATAGACATGGAATGAACTCTGTATCCCTAAGCCAA
321 -C--GCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTC-CTATACCTAAGCCAA
* *
14484837 CCCACGAAACGGGCGTGCGTGCTGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAACCCAGGG
382 CCCACGAAAC--G-G-GCGTGC-GGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGG
* * * * ** ** *
14484902 ATAGGCCTAGTCCC-CTCTGCGTGCTGTCGATCCTGCTATCGTAACCCTCGATCTGGTCCGATCT
442 ATCGGCCTAGTCCCTC-CTGCGTGCTATCAATCCTGCTACCACAACCCTCGATCCAGTCCAATCT
*
14484966 TAGATTGGGAATGAACTCCATATG-TCTAGACTACGGATGAACTCCAGATCCCTAAGTCAACCCA
506 TAGACTGGGAATGAACTCCATATGCT-TAGACTACGGATGAACTCCAGATCCCTAAGTCAACCCA
* * * * * * ** ***
14485030 TGAAATGAGTGTGTGGGTGCTCAGTCGG-CTGGAGAGGCTGGCCAGAGATGTGTAATGTGCAAGC
570 CGAAATGAGCGTGCGGGCGCTCAGTCGGTC-GGAGAGGCCGGCCAGAGAGGCATAATACACAAGC
* *
14485094 CGGGGATC-GACCCGGTCCCCCTCTGCATGCTACCAATGTCGA-TGGC-AGTCCTGCTGCCACAA
634 CGGGGATCAG-CCCGATCCCCCTCTGCATGCTACCAA--TCCACTGGCGA-TCCTGCTGCCACAA
* *
14485156 CCCTCGGT-TCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATG-AAT
695 CCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCATGAAAT
* * * *** * *
14485219 CGAGCGTGCGGACGCTCAGCCGGCCGGAGAGGTAGAATGTGTAAGTCAGGGATCGGCCCAGTCC-
759 -GAGAGTACGGACGCTCAGCCGACCGGAGAGGTAGAATGCACAAGCCAGGGATCAGCCCAGTCCT
* * ** * *
14485283 CCCTCTGTGTGTTGTCGATCCTGCTGCTGGTCCTACTGCCGCAACCCTCGATTCAATTTG
823 CCC-CTGCGTGCTACCGATCCTGCTGCTGGTCCTACTGCCGCAACCCTCGATCCAATCTG
* *
14485343 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
14485408 CCATGAAACGAGCGTGCAGGAGCTCAACCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGAC
66 CCATGAAACAAGCGTACAGGAGCTCAACCAGCAGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* * * *
14485473 CCGGTCCCTCCCTACGTGCTATCAATCCTGCTGCCGTAACCCTCGATCTAGTCCGATCTTAGACT
131 CCGATCCCACCCTACGTGCTATCAATCCTGCTACCGTAACCCTCGATCCAGTCCGATCTTAGACT
**
14485538 GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGAGCACTGAGCCGACCGGA
196 GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCACTGAGCCGACCGGA
* ** *
14485603 GAGACATAATGCGCAAGCCGGGGATCGACTCGGTCCCCTTCTGTGTGCTACCGGTCCCGCCGCCA
261 GAGACATAATACGCAAGCCGGGGATCGACTCGGTCCCCTTCTGCATGCTACCAGTCCCGCCGCCA
* * *
14485668 CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCCATGCCTAAGCCAACCCACGAA
326 CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACT-CCTATACCTAAGCCAACCCACGAA
* * * *
14485733 ACAGGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT
390 ACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCT
14485793 TTGAAGATCT
Statistics
Matches: 1112, Mismatches: 192, Indels: 77
0.81 0.14 0.06
Matches are distributed among these distances:
880 3 0.00
881 3 0.00
882 142 0.13
883 150 0.13
884 7 0.01
885 1 0.00
886 1 0.00
887 62 0.06
888 61 0.05
889 2 0.00
890 2 0.00
891 10 0.01
892 336 0.30
893 328 0.29
894 4 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (881 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACAAGCGTACAGGAGCTCAACCAGCAGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
CCGATCCCACCCTACGTGCTATCAATCCTGCTACCGTAACCCTCGATCCAGTCCGATCTTAGACT
GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCACTGAGCCGACCGGA
GAGACATAATACGCAAGCCGGGGATCGACTCGGTCCCCTTCTGCATGCTACCAGTCCCGCCGCCA
CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTATACCTAAGCCAACCCACGAAA
CGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTAGTCCC
TCCTGCGTGCTATCAATCCTGCTACCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAA
CTCCATATGCTTAGACTACGGATGAACTCCAGATCCCTAAGTCAACCCACGAAATGAGCGTGCGG
GCGCTCAGTCGGTCGGAGAGGCCGGCCAGAGAGGCATAATACACAAGCCGGGGATCAGCCCGATC
CCCCTCTGCATGCTACCAATCCACTGGCGATCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTT
AGACATGGAATGAACTCCGTATGCCGAAGCCAACCCATGAAATGAGAGTACGGACGCTCAGCCGA
CCGGAGAGGTAGAATGCACAAGCCAGGGATCAGCCCAGTCCTCCCCTGCGTGCTACCGATCCTGC
TGCTGGTCCTACTGCCGCAACCCTCGATCCAATCTG
Done.