Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 85 of 138
Found at i:14485673 original size:159 final size:159
Alignment explanation
Indices: 14485370--14485788 Score: 391
Period size: 159 Copynumber: 2.6 Consensus size: 159
14485360 AACTCCGTAT
* * * *
14485370 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGCAGCTCAA
* * *
14485435 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCTCCCTACGTGCTATCAATC
66 CCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCCTACGTGCTACCAATC
* * ** *
14485500 CTGCTGCCGTAACCCTCGATCTAG-TCCGA
131 CCGCCGCCACAACCCTCGATCTGGCT-CGA
* * * *
14485529 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGAGCA-CTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTAC-AGCAGCTC
* * * * **
14485592 AGCC-GACCGGAGAGACATAATGCGCAAGCCGGGGATCGACTCGGTCCC-CTTCTGTGTGCTACC
64 AACCAG-CCGGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTC-CCTACGTGCTACC
** * * *
14485655 GGTCCCGCCGCCACAACCCTCGGTCTGGCTGGG
127 AATCCCGCCGCCACAACCCTCGATCTGGCTCGA
* ** * * **
14485688 GCTTAGACATGGAATGAGCTCCCCATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTACAGCAGCTCA
* * * * *
14485752 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCG
65 ACCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCG
14485789 GCCTTTGAAG
Statistics
Matches: 209, Mismatches: 42, Indels: 18
0.78 0.16 0.07
Matches are distributed among these distances:
158 5 0.02
159 198 0.95
160 6 0.03
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGCAGCTCAA
CCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCCTACGTGCTACCAATC
CCGCCGCCACAACCCTCGATCTGGCTCGA
Found at i:14486154 original size:26 final size:26
Alignment explanation
Indices: 14486116--14486168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14486106 GGCTCAAAAT
*
14486116 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
14486142 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14486168 C
1 C
14486169 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14486602 original size:158 final size:156
Alignment explanation
Indices: 14486141--14486641 Score: 427
Period size: 158 Copynumber: 3.2 Consensus size: 156
14486131 AACTCCGTAT
* * *
14486141 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAAAGAACGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTACGGGCGCTCAG
* * ** ** * * * *
14486206 CCGGCCGGAGAGGTAG-ATGCGAAAGTAGGGGATCAGTTCGGTCCCCCCTACCTGCTATCGATCC
66 CC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCACCTACGTGCTGTCGATCC
* * * *
14486270 TGCTGCTGCAACCTTCGGTCCGGTCCGA
130 TACTGC-GCAACCCTCGATCCGCTCCGA
* * * * * * * *
14486298 TCTTAGAC-TGGGAATGAACTCCGTACGCATAAGTCAACCCATGAAATGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTACGGGCGCTCA
* * * * * * * *
14486362 GCCGGCGGAAGAGGCATAATGCCCAAGCCGGGGATCCGCCCGATCCCCATCTGCGTGCTGCCGGT
65 GCCGCCGG-AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAT-CCCACCTACGTGCTGTCGAT
* * * * * *
14486427 CCCACTAC-CACAACCTCGATTCGACT-GGG
128 CCTACTGCGCA-ACCCTCGATCCG-CTCCGA
* * * *
14486456 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTACGGGCGCTCAG
* *
14486521 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCTACCTACGTCCTGTCGATCC
66 CCG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCACCTACGTGCTGTCGATCC
* * *
14486586 TACTGTCGTAACCCTCGGTCCGATCCGA
130 TACTG-CGCAACCCTCGATCCGCTCCGA
* *
14486614 TCTTAGAC-TGGGAATGCACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14486642 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 72, Indels: 23
0.73 0.20 0.06
Matches are distributed among these distances:
156 5 0.02
157 83 0.32
158 148 0.57
159 24 0.09
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTACGGGCGCTCAG
CCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCACCTACGTGCTGTCGATCCT
ACTGCGCAACCCTCGATCCGCTCCGA
Found at i:14486644 original size:26 final size:26
Alignment explanation
Indices: 14486615--14486667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14486605 CCGATCCGAT
*
14486615 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14486641 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14486667 C
1 C
14486668 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14486847 original size:26 final size:26
Alignment explanation
Indices: 14486809--14486860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14486799 CCGGTCTGAT
14486809 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
14486835 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTTCATATG
14486861 GATAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:14486878 original size:194 final size:196
Alignment explanation
Indices: 14486595--14486968 Score: 495
Period size: 194 Copynumber: 1.9 Consensus size: 196
14486585 CTACTGTCGT
* * * *
14486595 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGCACTCCGTATGCTTAGACTGGGGATGAACT
1 AACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * * * * *
14486660 TCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATG
66 TCATATGCATAAGCCAAACCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGAAAAGGCAGAATG
* * *
14486725 CGTAAGTTGGGGATCGA-CCCGAT-CCCTCTGTGTGCTGCC-ATCCTGCTGCTAGTCCTGCTACT
131 CGCAAGTCGGGGAT-GAGCCCGATCCCCTCTGCGTGCTGCCGATCCTGCTGCTAGTCCTGCTACT
14486787 GC
195 GC
* * *
14486789 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACAT-GGAATGAAC
1 AACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAAC
* * *
14486853 TTCATATGGATAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGATCGAAAAGGCAGAAT
65 TTCATATGCATAAGCCAAACCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGAAAAGGCAGAAT
* * *
14486918 GTGCAAGTCGGGGATTAGCCCGGTCGCCCTCTGCGTGCTGCCGATCCTGCT
130 GCGCAAGTCGGGGATGAGCCCGATC-CCCTCTGCGTGCTGCCGATCCTGCT
14486969 ACCGTAAACC
Statistics
Matches: 153, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
193 1 0.01
194 128 0.84
195 1 0.01
196 15 0.10
197 8 0.05
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (196 bp):
AACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
TCATATGCATAAGCCAAACCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGAAAAGGCAGAATG
CGCAAGTCGGGGATGAGCCCGATCCCCTCTGCGTGCTGCCGATCCTGCTGCTAGTCCTGCTACTG
C
Found at i:14487487 original size:328 final size:327
Alignment explanation
Indices: 14486992--14487600 Score: 734
Period size: 328 Copynumber: 1.9 Consensus size: 327
14486982 GTCCGGTCTG
* *
14486992 ATCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCCATGAAATGAGCATGCGGGCGTTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAGCATGCGGGCGTTCA
* * * * **
14487057 GCCAGCCGGAGAGGCATAATGCGTAACTCGGGGATCGGCTTGGTCCCCCTCTATGTGCTATCAGT
66 GCCAGCCGAAGAGGCAGAATGCGCAACTCGGGGACCGGCCCGGTCCCCCTCTATGTGCTATCAGT
* *
14487122 CCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATG-GAATGAAC-TCTGTATGCCTAAG
131 CCCGCTACCACAACCCTCAGTCCAGCTAGAGCTTAGAC-TGTGAATGAACTTC-GTAT-CCTAAG
* * * * * *
14487185 CCAACCCACGAAACGAGCGCACGGGCGCCCAACTGACCGGAGAGGTAGAATGCGTAAGTCGGGGA
193 CCAACCCACG-AACGAGCACACAGGCACCCAACCGACCGGAGAGGTAGAATGCGTAAGCCAGGGA
14487250 TCAGCCCGGT-CCCCTCTGCGTGCTACCGATCCTATTGCTGGTCCTGCTGCCGCAACCCTCGGTT
257 TCAGCCCGGTCCCCCTCTGCGTGCTACCGATCCTATTGCTGGTCCTGCTGCCGCAACCCTCGGTT
14487314 CGATCC
322 CGATCC
*
14487320 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAATGAGCGTGCGGGCGTTC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAA-CTCAACCCATGAAATGAGCATGCGGGCGTTC
* *
14487384 AGCCAGTCGAAGAGGCAGAATGCGCAAGCT-GGGGACCGGCCCGGTCCCCC-CT-TGCGTGCTGT
65 AGCCAGCCGAAGAGGCAGAATGCGCAA-CTCGGGGACCGGCCCGGTCCCCCTCTAT--GTGCTAT
* ** * *
14487446 C-GATCCTGCTACCGTAACCCTC-GTTCCGGTCT-GATCTTAGACTGTGAATGAACTTCGTATCC
127 CAG-TCCCGCTACCACAACCCTCAG-TCCAG-CTAGAGCTTAGACTGTGAATGAACTTCGTATCC
* * * *** * * *
14487508 TAAGTCAACCCATGAACGAGCATACAGGCATTGAGCCGGCTGGAGAGGTAGAATGCGTAAGCCAG
189 TAAGCCAACCCACGAACGAGCACACAGGCACCCAACCGACCGGAGAGGTAGAATGCGTAAGCCAG
* *
14487573 GGATCAGCTCGGTCCCCCTCTGTGTGCT
254 GGATCAGCCCGGTCCCCCTCTGCGTGCT
14487601 GCCGGTCTCG
Statistics
Matches: 236, Mismatches: 35, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
326 51 0.22
327 33 0.14
328 145 0.61
329 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (327 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAGCATGCGGGCGTTCA
GCCAGCCGAAGAGGCAGAATGCGCAACTCGGGGACCGGCCCGGTCCCCCTCTATGTGCTATCAGT
CCCGCTACCACAACCCTCAGTCCAGCTAGAGCTTAGACTGTGAATGAACTTCGTATCCTAAGCCA
ACCCACGAACGAGCACACAGGCACCCAACCGACCGGAGAGGTAGAATGCGTAAGCCAGGGATCAG
CCCGGTCCCCCTCTGCGTGCTACCGATCCTATTGCTGGTCCTGCTGCCGCAACCCTCGGTTCGAT
CC
Found at i:14487621 original size:157 final size:159
Alignment explanation
Indices: 14487320--14487728 Score: 377
Period size: 157 Copynumber: 2.6 Consensus size: 159
14487310 GGTTCGATCC
* * * * *
14487320 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCATTCA
** * *
14487385 GCCAGTCGAAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGGTCCCCCCTTGCGTGCTGTCGAT
66 GCCAGTCGAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGGTCCCCCCTTGCGTGCTGCCGAT
*
14487450 CCTGCTACCGTAACCCTCGTTCCGGTCTG
131 CCTGCTACCATAACCCTCGTTCCGGTCTG
* * * *
14487479 ATCTTAGACTGTGAATGAACTTCGTAT-CCTAAGTCAACCCATG-AACGAGCATACAGGCATTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCATTCA
* * * * * * *
14487542 GCC-GGCTGGAGAGGTAGAATGCGTAAGCCAGGGATCAGCTCGGT-CCCCCTCTGTGTGCTGCCG
66 GCCAGTC-GAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGGTCCCCCCT-TGCGTGCTGCCG
* * * *
14487605 GT-CTCGCTGCCATAACCCTCGGTCCAG-CTGG
129 ATCCT-GCTACCATAACCCTCGTTCCGGTCT-G
** * * * * * * * *
14487636 GCCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGCGGGCACTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCATTC
14487700 AGCC-GATC-AGAGAGGCAGAATGCGCAAGC
65 AGCCAG-TCGA-AGAGGCAGAATGCGCAAGC
14487729 TGGGGATCGG
Statistics
Matches: 198, Mismatches: 43, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
156 12 0.06
157 95 0.48
158 30 0.15
159 60 0.30
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCATTCA
GCCAGTCGAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCGGTCCCCCCTTGCGTGCTGCCGAT
CCTGCTACCATAACCCTCGTTCCGGTCTG
Found at i:14488340 original size:159 final size:157
Alignment explanation
Indices: 14487938--14488353 Score: 412
Period size: 158 Copynumber: 2.6 Consensus size: 157
14487928 AACTCTGAAT
* * *
14487938 GCTTAGACATGGAATGAACTTCGTATGGCTAAGCCAACCCATGAAATGAGCGTGGGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATG-GCGTGCGGGCGCTCAG
* * * * *
14488003 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGGTCCCTCCCTACATGCTGTCGATC
65 CCGGCC-GAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCTCCCTACATGCTGTCGATC
* **
14488068 CTGCTGCCGTAACCCTCGATCCGGTCCAA
129 CCGCTGCCACAACCCTCGATCCGGTCCAA
* * * *
14488097 TCTTA-AC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA-GGAACATGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGG--CGTGCGGGCGCTC
** * * * ***
14488159 AGCCAACCGAAAAGGCATAATGCGCAAGTCGAGGATCAACCCGAT-CCTCCTCTGTGTGCTGTCG
63 AGCCGGCCG-AGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCTCC-CTACATGCTGTCG
* * * *
14488223 ATCCCGCTGCCACAACCCTCGGTCTGG-CTAGG
126 ATCCCGCTGCCACAACCCTCGATCCGGTCCA-A
*
14488255 GCTTAGACATGGAATGAAC-TCGCTATGCCTAAGCCAACCCACGAAATTGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTTCG-TATGCCTAAGCCAACCCACGAAA-TGGCGTGCGGGCGCTCA
* * *
14488319 GTCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGAT
64 GCCGGCC-GAGAGGCAGAATGCGCAAGCCGAGGAT
14488354 TGGCGTAGTC
Statistics
Matches: 205, Mismatches: 40, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 10 0.05
158 117 0.57
159 73 0.36
160 2 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGGCGTGCGGGCGCTCAGC
CGGCCGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCTCCCTACATGCTGTCGATCCC
GCTGCCACAACCCTCGATCCGGTCCAA
Found at i:14488450 original size:26 final size:26
Alignment explanation
Indices: 14488414--14488464 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14488404 CCAGTCCGAT
*
14488414 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
14488440 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14488465 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:14492776 original size:159 final size:158
Alignment explanation
Indices: 14492394--14492776 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 158
14492384 AACTCCGTAT
* * * *
14492394 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGGAACGAGCGTACGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * *
14492459 TCGACTGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCATTCCCCCTCGCGTGCTGTCGATCC
66 CCGACTGAAGAAGCAGAATGCACAAGCCGAGGATCGGCCCATTCCCCCTCGCATGCTGTCGATCC
* *
14492524 TACTGCCGCAACCCTCGGTCTGGACCGA
131 CACTGCCGCAACCCTCGGTCTCGACCGA
* * * * * ***
14492552 TCTTAGAC-TACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCATTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * *
14492616 GCC-AGCTGGAGAAGCATAATGCGCAAGCCGAGGATCGGCCCGA-TCCCCCTCTGCATGCTGTCG
65 GCCGA-CTGAAGAAGCAGAATGCACAAGCCGAGGATCGGCCC-ATTCCCCCTC-GCATGCTGTCG
* * * * ** *
14492679 GTCCCGCTG-TGACAAGCCGT-GGTC-CGATTGGG
127 ATCCCACTGCCG-CAA-CCCTCGGTCTCGA-CCGA
* *
14492711 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
14492776 C
66 C
14492777 TGGGCGGAGA
Statistics
Matches: 179, Mismatches: 38, Indels: 15
0.77 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 94 0.53
159 79 0.44
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCGACTGAAGAAGCAGAATGCACAAGCCGAGGATCGGCCCATTCCCCCTCGCATGCTGTCGATCC
CACTGCCGCAACCCTCGGTCTCGACCGA
Found at i:14492810 original size:159 final size:159
Alignment explanation
Indices: 14492394--14492810 Score: 384
Period size: 159 Copynumber: 2.6 Consensus size: 159
14492384 AACTCCGTAT
* * * *
14492394 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGGAACGAGCGTACGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * *
14492459 -TCGACTGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCATTCCCCCTCGCGTGCTGTCGATC
66 CTCGGCTGGAGAGACAAAATGCACAAGCCGGGGATCGGCCCATTCCCCCTCGCATGCTGTCGATC
* *
14492523 CTACTGCCGCAACCCTCGGTCTGGACCGA
131 CCACTGCCGCAACCCTCGGTCTCGACCGA
* * * * * ***
14492552 TCTTAGAC-TACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCATTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * *
14492616 GC-CAGCTGGAGA-AGCATAATGCGCAAGCCGAGGATCGGCCCGA-TCCCCCTCTGCATGCTGTC
65 GCTCGGCTGGAGAGA-CAAAATGCACAAGCCGGGGATCGGCCC-ATTCCCCCTC-GCATGCTGTC
* * * * ** *
14492678 GGTCCCGCTG-TGACAAGCCGT-GGTC-CGATTGGG
127 GATCCCACTGCCG-CAA-CCCTCGGTCTCGA-CCGA
* *
14492711 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * **
14492776 CTGGGC-GGAGAGACAAAATGCCCAAATCGGGGATC
66 CTCGGCTGGAGAGACAAAATGCACAAGCCGGGGATC
14492811 AGCCTGGTCC
Statistics
Matches: 202, Mismatches: 46, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
157 1 0.00
158 93 0.46
159 101 0.50
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CTCGGCTGGAGAGACAAAATGCACAAGCCGGGGATCGGCCCATTCCCCCTCGCATGCTGTCGATC
CCACTGCCGCAACCCTCGGTCTCGACCGA
Found at i:14492910 original size:26 final size:26
Alignment explanation
Indices: 14492869--14492921 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14492859 CCGGTCTAAT
14492869 CTTAGATAGGGAATGAACTCCATATG
1 CTTAGATAGGGAATGAACTCCATATG
*
14492895 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCATATG
14492921 C
1 C
14492922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCATATG
Found at i:14493633 original size:26 final size:26
Alignment explanation
Indices: 14493593--14493645 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14493583 GGCTCAAAAT
14493593 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
14493619 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGTAATGAACTCCGTATG
14493645 C
1 C
14493646 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:14494044 original size:158 final size:157
Alignment explanation
Indices: 14493618--14494079 Score: 414
Period size: 158 Copynumber: 2.9 Consensus size: 157
14493608 AACTCCGTAT
* * * * *
14493618 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGACGCTCAA
1 GCTTAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* ** * * *
14493683 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCCTACGTGCTATCGATCT
66 TCGGTCGGAGAGGCAGAATGCACAAGCTGGGGA-TCGCCCGGTCCCCCCTACGTGCTATAGATCT
* **** * *
14493748 TGCTGTTGCAACTCTCAGTTCGGTGTGA
130 CGCTACCACAACCCTCAGTCCGGTGTGA
* ** * * *
14493776 TCTTAGAC-TGGGAATG-ACCTCCGTATGCAAAAGTCAACCCATGAAACGAGCGTGTGGGCGCTG
1 GCTTAGACAT-GGAATGAACC-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTC
** * * * * *
14493839 AGTCGGTCAAAGAGGCATAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTATGTGCTGCTAG
64 AGTCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCG-CCCGGTCCCCC-CTACGTGCT-ATAG
* *
14493904 -TCTCGCTACCACAACCCTTAGTCCGGT-TGGG
126 ATCTCGCTACCACAACCCTCAGTCCGGTGT-GA
* *
14493935 GCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGA-CGTGTGGGCGGTCAG
1 GCTTAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * ** **
14493999 TCGGTCGGAGAGGCAGAATGCATAAGCTGAGGATCAGCCCGGTCCCTCCTGTGTGCTACCGATC-
66 TCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATC-GCCCGGTCCCCCCTACGTGCTATAGATCT
*
14494063 CTGCTGCCACAACCCTC
130 C-GCTACCACAACCCTC
14494080 GATCCGATCC
Statistics
Matches: 238, Mismatches: 55, Indels: 23
0.75 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 28 0.12
158 136 0.57
159 66 0.28
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
TCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCGCCCGGTCCCCCCTACGTGCTATAGATCTC
GCTACCACAACCCTCAGTCCGGTGTGA
Found at i:14494144 original size:26 final size:26
Alignment explanation
Indices: 14494093--14494145 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14494083 CCGATCCGAT
* *
14494093 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14494119 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14494145 C
1 C
14494146 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14500725 original size:13 final size:13
Alignment explanation
Indices: 14500707--14500731 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14500697 GGTGCTCAAC
14500707 CGATCGGAGAGGT
1 CGATCGGAGAGGT
14500720 CGATCGGAGAGG
1 CGATCGGAGAGG
14500732 CATAATGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
CGATCGGAGAGGT
Found at i:14501052 original size:26 final size:26
Alignment explanation
Indices: 14501014--14501066 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14501004 GGCTCAAAAT
14501014 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14501040 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
14501066 C
1 C
14501067 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14501543 original size:26 final size:26
Alignment explanation
Indices: 14501514--14501564 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14501504 TGATCCGATC
*
14501514 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
14501540 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14501565 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:14502241 original size:157 final size:158
Alignment explanation
Indices: 14501890--14502273 Score: 377
Period size: 157 Copynumber: 2.4 Consensus size: 158
14501880 CTTAAATTAA
* * * *
14501890 GAATGAACTCCGTATGCCTAAGCCAACCCATTAAATGAGCGTGCAGGCACTCAGTCGGCCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTAAGTCGGCCAGAGA
* * *
14501955 GGCACAATGCGCAAGCCAGGGATCGGCCCGGTACCCCCTACATGCTGTCGATCTTGCTGCCATAA
66 GGCACAATGCGCAAGCCAGGGATCGACCCGATACCCCCTACATGCTGTCGATCTTGCTGCCACAA
* * * * * *
14502020 CCTTCAGTTTGTTATGATCTTATATTGG
131 CCCTCAGTTTGCTAGGAGCTTAGAATGG
* * * * * *
14502048 GAATGAACTCCGTATGCCTAAGTCC-ACCCACGAAACGAGTGTGCGGGCGCTAAGTTGGCCGGAT
1 GAATGAACTCCGTATGCCTAAG-CCAACCCATGAAACGAGCGTGCAGGCGCTAAGTCGGCCAGAG
* * * *
14502112 AGGCATAATGCGCAAGCCA-GG-TCGACCCGATCCCCCTCTGCGTGCTGTC-AGTGC-TGCTGCC
65 AGGCACAATGCGCAAGCCAGGGATCGACCCGATACCCC-CTACATGCTGTCGA-T-CTTGCTGCC
*
14502173 ACAACCCTCAGTTTGGCT-GGGGCTTAGACAT-G
127 ACAACCCTCAGTTT-GCTAGGAGCTTAGA-ATGG
* * * * * * * *
14502205 GAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGCTGGCGCTCAGCCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTAAGTCGGCCAGAGA
14502270 GGCA
66 GGCA
14502274 GGATGCATAA
Statistics
Matches: 184, Mismatches: 35, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
156 15 0.08
157 94 0.51
158 73 0.40
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTAAGTCGGCCAGAGA
GGCACAATGCGCAAGCCAGGGATCGACCCGATACCCCCTACATGCTGTCGATCTTGCTGCCACAA
CCCTCAGTTTGCTAGGAGCTTAGAATGG
Found at i:14503178 original size:159 final size:158
Alignment explanation
Indices: 14502887--14503396 Score: 497
Period size: 159 Copynumber: 3.2 Consensus size: 158
14502877 CGTGGCTCAA
* * *
14502887 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCCACCAAACGAGAGTGCGGGCGTT
1 AATCTTAGACTGGGAATGAACTCCGTATGCATAAGCC-AACCCACGAAAAGAGAGTGCGGGCGTT
* * * * * * * *
14502952 CAGTCGGTTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTTGCGTGCTATCG
65 CAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCTC-TGCGTGCTACCG
* *
14503017 ATCCTGCAACTGCAACCCTCAGTCTGGTCC
129 ATCCTGCTACTGCAACCCTCGGTCTGGTCC
* * * ** *
14503047 AATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAAGAGCGTGCGGGCACTG
1 AATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAAAGAGAGTGCGGGCGTTC
* * * * *
14503112 AGCCGATCGAAAAGGCATAATGCGCAAGCCGGGGATCGGCCAGATCCTCCTCTACGTGCTGCCGA
66 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCC-CCTCTGCGTGCTACCGA
* * * ** *
14503177 TCCCGTTGCCACAACCCTCGGTCTGG-CTG
130 TCCTGCTACTGCAACCCTCGGTCTGGTC-C
*** * * * *
14503206 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGAGTGCGGGCGTT
1 AATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAAAGAGAGTGCGGGCGTT
* * * * * *
14503270 CAGCCAACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGTTCCCC-CTTGCGTGCTACCG
65 CAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCTC-TGCGTGCTACCG
* * *
14503334 ATCCTACTA-TCGCAACCCTCGGTCTGATCT
129 ATCCTGCTACT-GCAACCCTCGGTCTGGTCC
* *
14503364 GATCTTAGACTGGGAATGAACTTCGTATGCATA
1 AATCTTAGACTGGGAATGAACTCCGTATGCATA
14503397 GACTGGGGAT
Statistics
Matches: 276, Mismatches: 67, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 58 0.21
159 177 0.64
160 39 0.14
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAAAGAGAGTGCGGGCGTTC
AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCTCTGCGTGCTACCGAT
CCTGCTACTGCAACCCTCGGTCTGGTCC
Found at i:14503408 original size:26 final size:26
Alignment explanation
Indices: 14503369--14503419 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14503359 GATCTGATCT
14503369 TAGACTGGGAATGAACT-TCGTATGCA
1 TAGACTGGGAATGAACTCT-GTATGCA
*
14503395 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
14503420 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCA
Found at i:14505061 original size:286 final size:286
Alignment explanation
Indices: 14504544--14505083 Score: 638
Period size: 286 Copynumber: 1.9 Consensus size: 286
14504534 AATGCGCAAG
* * * *** * * *
14504544 CTGAGGATCGACCCGATCCCTCTCTTCGTGCTGCCAGTCCCATTGCCGTAACTCTCGGTCCGGCT
1 CTGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCCCACTGCAACAACCCTCAGTCCGACT
* *
14504609 GGGGCTTTGACATGGAATAAACTGCCTATGCCTAAGCCAACCCATGAAACAGGTGTGCGAGCACT
66 GGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACAGGTGTGCGAGCACT
* * *
14504674 CAGTCGACCGGAGAGATAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCGA
131 CAGCCGACCGGAGAGACAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTACCGA
* ** * * * *
14504739 TCCTACTACCGTAGTCCTCAATCTGATCTAATCTTAGATTGGGAATGAAATTCGTATGCATAAGT
196 TCCTACTACCGCAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAAATCCGTATGCATAAGT
14504804 CAGCCCACGAAATGAGCGTGCGGGCA
261 CAGCCCACGAAATGAGCGTGCGGGCA
* * * *
14504830 CTGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAGTCCCGCTGCAACAACCCTTAGTTCGACT
1 CTGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCCCACTGCAACAACCCTCAGTCCGACT
* * *
14504895 GGGGCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAAC-GGACATGTG-G-GT
66 GGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACAGG---TGTGCGAGC
* * * * * * *
14504957 GCTTAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATC-GACCCGGTCCCCCCTACGTGCTG
128 ACTCAGCCGACCGGAGAGACAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCCTACGTGCTA
* * ** * * *
14505021 TCGATCCTGCTGTCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
192 CCGATCCTACTACCGCAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAAATCCGTATGC
14505084 TTAGATTGGG
Statistics
Matches: 208, Mismatches: 42, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
285 3 0.01
286 200 0.96
287 1 0.00
288 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (286 bp):
CTGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCCCACTGCAACAACCCTCAGTCCGACT
GGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACAGGTGTGCGAGCACT
CAGCCGACCGGAGAGACAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTACCGA
TCCTACTACCGCAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAAATCCGTATGCATAAGT
CAGCCCACGAAATGAGCGTGCGGGCA
Found at i:14505086 original size:26 final size:25
Alignment explanation
Indices: 14505057--14505135 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
14505047 CCGATCCGAT
14505057 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
* *
14505083 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
14505109 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
14505135 C
1 C
14505136 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 44 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:14505880 original size:26 final size:26
Alignment explanation
Indices: 14505821--14505881 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
14505811 TGCATCGTGG
*
14505821 CTCAAAAT-CTTAGACTGGGAATGAA
1 CTCAATATGCTTAGACTGGGAATGAA
**
14505846 CTCCGTATGCTTAGACAT-GGAATGAA
1 CTCAATATGCTTAGAC-TGGGAATGAA
14505872 CTCAATATGC
1 CTCAATATGC
14505882 GTAAGCCAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 5 0.17
26 23 0.79
27 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (26 bp):
CTCAATATGCTTAGACTGGGAATGAA
Found at i:14506217 original size:159 final size:158
Alignment explanation
Indices: 14505854--14506356 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 158
14505844 AACTCCGTAT
* * * * *
14505854 GCTTAGACATGGAATGAACTCAATATGCGTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
14505919 CCGGTCAGAGAGGCAGAATGCATAAGCCGGGGAAT-GGCCCGGTCCCCCCTGCATGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGG-ATCGACCCGGTCCCCCCTACATGCTGCCAATC
* * * **
14505983 CTGCTGCCGCAACCCTCAGTTCGGTCTGA
130 CTGCTACCACAACCCTCAGGTCGAACTGA
* * * * * * *
14506012 TCTTAGAC-TAGGAATGAACTCCGTATCCCTAAGTCAACCTATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
14506076 GCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTTTACGTGCTGCCAAT
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCC-CTACATGCTGCCAAT
* * * *
14506141 CCTGCTACCACAATCGT-TGGTCGAACTGGG
129 CCTGCTACCACAACCCTCAGGTCGAACT-GA
* * * *
14506171 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * *
14506236 CCTATCGGAGAGGCAGAATGCTCAAGCCGTGGATCGGCCCGATCCCCCCTGCGA-GCTACCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTAC-ATGCTGCCAATC
** * **
14506300 CTGCTGTCGCAACCCTC-GGTCCGGTCTGA
130 CTGCTACCACAACCCTCAGGT-CGAACTGA
* *
14506329 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
14506357 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 64, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 145 0.53
159 122 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGCCAATCC
TGCTACCACAACCCTCAGGTCGAACTGA
Found at i:14506359 original size:26 final size:26
Alignment explanation
Indices: 14506330--14506382 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14506320 CCGGTCTGAT
*
14506330 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
14506356 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14506382 C
1 C
14506383 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14507150 original size:26 final size:26
Alignment explanation
Indices: 14507121--14507173 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14507111 CTGGTCTGAT
*
14507121 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14507147 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14507173 C
1 C
14507174 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14507500 original size:26 final size:26
Alignment explanation
Indices: 14507464--14507516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14507454 CCTATCCGAT
*
14507464 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14507490 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14507516 C
1 C
14507517 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14507883 original size:26 final size:26
Alignment explanation
Indices: 14507843--14507894 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14507833 TCCGGTCCGA
*
14507843 TCTTAGACTATGAATGAACTCTGTAT
1 TCTTAGACTATGAATGAACTCCGTAT
14507869 TCTTAGAC-ATGGAATGAACTCCGTAT
1 TCTTAGACTAT-GAATGAACTCCGTAT
14507895 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTTAGACTATGAATGAACTCCGTAT
Found at i:14508217 original size:159 final size:157
Alignment explanation
Indices: 14507870--14508370 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
14507860 ACTCTGTATT
* * * * * * *
14507870 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGATAAGC
* * * * **
14507935 CAACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGT-CCCCTCCTGGTGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCT-CTGGTGCTACCGATCC
* ** *
14507999 TACTGCCGTAACCCTCGGTCTGGTCCTAT
130 CACTGCCACAACCCTCGGTCTGG-CCTAG
* * *
14508028 CATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGATGAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGATAAGC
* *
14508093 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCCGCCCGGTCCCCCTCTGTGTGCTACCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTG-GTGCTACCGATCC
* * *
14508158 CGCTGCCACAACCCTTGGTCTGG-CTGGGG
130 CACTGCCACAACCCTCGGTCTGGCCT--AG
* * * *
14508187 CTTAGACTTGGAACGAACTCCCTATGCCTAAGTCAACCCACGAAA-TAGGTGTGCGGGC-ACTAA
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GAGTGCGGGCGA-TAA
* * * ***
14508250 GCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTTGAT
64 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTG-GTGCTACCGAT
** ** * * *
14508314 CCTGCT-CCGTAACCCTCGGTCTGGTTCGAT
128 CCCACTGCCACAACCCTCGGTCTGG-CCTAG
* *
14508344 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTTGGAATGAACTCCGTATGC
14508371 TTAGACTGGG
Statistics
Matches: 284, Mismatches: 51, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
157 40 0.14
158 113 0.40
159 131 0.46
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGATAAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGGTGCTACCGATCCC
ACTGCCACAACCCTCGGTCTGGCCTAG
Found at i:14508373 original size:26 final size:26
Alignment explanation
Indices: 14508344--14508396 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14508334 CTGGTTCGAT
*
14508344 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14508370 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14508396 C
1 C
14508397 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14508753 original size:26 final size:26
Alignment explanation
Indices: 14508724--14508776 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14508714 TCGGTCTGAT
*
14508724 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14508750 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14508776 C
1 C
14508777 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14508860 original size:880 final size:878
Alignment explanation
Indices: 14507278--14509244 Score: 2412
Period size: 880 Copynumber: 2.2 Consensus size: 878
14507268 TATCGATTCT
* * * *
14507278 GCTGCCACAACCCTTGGTCCGGCTGTGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCTAAC
1 GCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGC-AAC
* ** * * * *
14507343 CCACGAAACGGATGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGC
65 CCACGAAAAGG-TGTGCGGGCACTAAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGC
* * * * * * * * *
14507408 CCGATCCCCCTTATGTGCTGCCGATCCTATCGCCACAACCCTCGGTCCT-ATCCGATCTTAGACT
129 CCGGTCCCCCCTGTGTGCTGTCGATCCT-GCTCCGCAACCCTCGGT-CTGGTTCGATCTTAGACT
* * *
14507472 GGGAATGAACTCTTTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCTACAAAATG
192 GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATG
* * ** * * * *
14507537 AGCGTGTGGGTGCTCAACCGGTCGGAGAGGTCGATCGAAGAGGAATTATACGTAAGTCGAGGATC
257 AGCGTGCGGGCGCTCAACCGACCGGAGAGGCCGATCGAAGAGCAATAACACGTAAGTCGAGGATC
* * *
14507602 AACCCGGTTCCCCTCTATGTGCTGCCGATCCTGCTATCGGTCCTGCTGCCACAACCCTCAGTCCG
322 AACCCGGATCCCCTCTATGTGCTGCCAATCCCGCTATCGGTCCTGCTGCCACAACCCTCAGTCCG
* * *
14507667 GCTGAGGGCATAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGAGGG
387 GATGAGGGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGAGAG
** * * * * *
14507732 CACCCAGTCGACCAGAAAGGCAGAATGTACAACCCGGGGATCGGCTCGATCCCCTTACGTGCTAC
452 CACCCAACCGACCAGAAAGGCAGAATGCACAACCCGAGGATCAGCTCGATCCCCCTACATGCTAC
* *
14507797 CAATCCTGCTGCTAGTCCTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTATGAATGAAC
517 CAATCCTACTGCTAGTCCTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAAC
*
14507862 TCTGTATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGG
582 TCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGG
* * ** *
14507927 CGCTCAGCCAACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCTCCTG-GTGCT
647 CCCTCAACCAACCAGAGAGGCAGAATACGCAAGCCGAAGATCGGCCCGGTCCCC-CCTGCGTGCT
** ** *
14507991 GTCGATCCTACTGCCGTAACCCTCGGTCTGGTCCTATCATAGACTGGGAATGAACTCCGTATGCC
711 GTCGATCCTACTGCCCCAACCCTCGGTCCAGTCCAATCATAGACTGGGAATGAACTCCGTATGCC
*
14508056 TAAGTCAACCCACGAAACGAGAGTGCGGGCGATGAGCCGATCGGAGAGGCATAATGCGCAAGCC-
776 TAAGTCAACCCACGAAACGAGAGTGCAGGCGATGAGCCGATCGGAGAGGCATAATGCGCAAGCCA
*
14508120 GAGGATCCG-CCCGGTCCCCCTCTGTGTGCTACCGATCCC
841 G-GGAT-CGACCCGGTCCCCCTCTGCGTGCTACCGATCCC
*
14508159 GCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACTTGGAACGAACTCCCTATGCCTAAGTCAAC
1 GCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAG-CAAC
*
14508224 CCACGAAATAGGTGTGCGGGCACTAAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC
65 CCACGAAA-AGGTGTGCGGGCACTAAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGC
* * *
14508289 CCGGTCCCCCCTGCGTGCTGTTGATCCTGCTCCGTAACCCTCGGTCTGGTTCGATCTTAGACTGG
129 CCGGTCCCCCCTGTGTGCTGTCGATCCTGCTCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGG
*
14508354 GAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACCAAATGAG
194 GAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAG
* * * * * *
14508419 CGTGCGGGCGCTCAGCCGACCGGAGAGGCCGATCGAAGAGCCATAACGCGTAAGTCGGGGATTAG
259 CGTGCGGGCGCTCAACCGACCGGAGAGGCCGATCGAAGAGCAATAACACGTAAGTCGAGGATCAA
* * *
14508484 CCC-GATCGCCCTCTGTGTGCTGCCAATCCCGCTGTCGG-CTCTGCTGCCACAACCCTC-GATCT
324 CCCGGATC-CCCTCTATGTGCTGCCAATCCCGCTATCGGTC-CTGCTGCCACAACCCTCAG-TCC
* * *
14508546 GGATG-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGA
386 GGATGAGGGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGAGA
* * * * * * *
14508610 GCACTCAACCGATC-GAAGAGGCAGAATGCGCAAGCCGAGGATTAGCTTGATCCCCCCTGCATGC
451 GCACCCAACCGACCAGAA-AGGCAGAATGCACAACCCGAGGATCAGCTCGAT-CCCCCTACATGC
** * * ** * * *
14508674 TGTCGATCCTACTGCTGGTCCTGCTGCCACAACCCTGGGTTCGGTCTGATCTTAGACTGGGAATG
514 TACCAATCCTACTGCTAGTCCTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATG
* * *
14508739 AACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGTGC
579 AACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTAC
* * * * ***
14508804 GGGCCCTCAACCGATC-GAAGAGGCAGAATACGCAAGTCGAAGATTGGTTGGGTCCCCCCTGCGT
644 GGGCCCTCAACCAACCAG-AGAGGCAGAATACGCAAGCCGAAGATCGGCCCGGTCCCCCCTGCGT
** * * * *
14508868 GCTGTCGATCCTGTTGCCCCAACCTTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTAT
708 GCTGTCGATCCTACTGCCCCAACCCTCGGTCCAGTCCAATCATAGACTGGGAATGAACTCCGTAT
* * * * * *
14508933 GCCTAATTCAACCCATGGAATGAGAGTGCAGGTGATGAGCCGGTCGGAGAGGCATAATGCGCAAG
773 GCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGATGAGCCGATCGGAGAGGCATAATGCGCAAG
*** * *
14508998 CCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTTGGTCCT
838 CCAGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCCC
* ** * * * *
14509039 GCTGCTACAACCCTCAGTCTGGCTGGGGCTTAGACATT-TAATGAAATCCCTATACCTATGCCAA
1 GCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGAC-TTGGAATGAACTCCCTATGCCTAAG-CAA
* * * * * **
14509103 CCCACGAAACGG-GCATGCGCGCACTTAGCCGGCCAGAGAGGCAGAATGCGTAAGTTAGGGATCG
64 CCCACGAAAAGGTG--TGCGGGCACTAAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCG
* * *
14509167 G-CCGAGTCTCCCCTGTGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTTTGATCTTAGA
127 GCCCG-GTCCCCCCTGTGTGCTGTCGATCCTGCT-CCGCAACCCTCGGTCTGGTTCGATCTTAGA
*
14509231 CTGGGGATGAACTC
190 CTGGGAATGAACTC
14509245 AATATGCCTA
Statistics
Matches: 925, Mismatches: 144, Indels: 34
0.84 0.13 0.03
Matches are distributed among these distances:
878 4 0.00
879 109 0.12
880 632 0.68
881 177 0.19
882 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (878 bp):
GCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCAACC
CACGAAAAGGTGTGCGGGCACTAAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCC
GGTCCCCCCTGTGTGCTGTCGATCCTGCTCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGA
ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCG
TGCGGGCGCTCAACCGACCGGAGAGGCCGATCGAAGAGCAATAACACGTAAGTCGAGGATCAACC
CGGATCCCCTCTATGTGCTGCCAATCCCGCTATCGGTCCTGCTGCCACAACCCTCAGTCCGGATG
AGGGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGAGAGCACC
CAACCGACCAGAAAGGCAGAATGCACAACCCGAGGATCAGCTCGATCCCCCTACATGCTACCAAT
CCTACTGCTAGTCCTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCTG
TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCCCT
CAACCAACCAGAGAGGCAGAATACGCAAGCCGAAGATCGGCCCGGTCCCCCCTGCGTGCTGTCGA
TCCTACTGCCCCAACCCTCGGTCCAGTCCAATCATAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGAGTGCAGGCGATGAGCCGATCGGAGAGGCATAATGCGCAAGCCAGGGAT
CGACCCGGTCCCCCTCTGCGTGCTACCGATCCC
Found at i:14510283 original size:26 final size:26
Alignment explanation
Indices: 14510254--14510306 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14510244 CCGGTCTGAT
14510254 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
** * *
14510280 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14510306 C
1 C
14510307 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14510592 original size:12 final size:12
Alignment explanation
Indices: 14510575--14510616 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
14510565 CCCAGTCCCC
14510575 CCTGCTGCTGGT
1 CCTGCTGCTGGT
*
14510587 CCTGCTACTGGT
1 CCTGCTGCTGGT
14510599 CCTGCTGCTGGT
1 CCTGCTGCTGGT
14510611 CCTGCT
1 CCTGCT
14510617 ACCACAACCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.02, C:0.36, G:0.29, T:0.33
Consensus pattern (12 bp):
CCTGCTGCTGGT
Found at i:14510969 original size:159 final size:159
Alignment explanation
Indices: 14510677--14511170 Score: 505
Period size: 159 Copynumber: 3.1 Consensus size: 159
14510667 GCCTAGACAT
* * *
14510677 GGAATGAACTCCGTCTGCCTAAGCCAACCCACGAAACGAGCA-TGCGGGCTCTCAGTCGG-CTGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-AGTGCGGGCGCTCAGCCGGTC-GG
* * * * *
14510740 AGAGGCAGAATGCGCAAGCTGGGGATCAGCCTGGTCCCCCTCTGTGTGCT-ATCGATCCTGCTAT
64 AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTAC
*
14510804 CGCAACCCTCGGTCTGGTCCGATCTTAGACTG
128 CGCAACCCTCGGTCTGGTCCGATCTTAGAATG
* * * * * *
14510836 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGAGTGCAGGCGCTGAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGTCGGAG
* * ** * * ** *
14510901 AGGCATAATGCGCAAACCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGGTCCCACTACCAC
66 AGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGC
* * * **
14510966 AACCCTCTGTCT-GACTGGGGCTTAGAGAT-
131 AACCCTCGGTCTGGTC-CGATCTTAGA-ATG
* * * * * *
14510995 GGACTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGGTCGGGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGTCGGAG
* * ** * * *
14511060 AGGCAGAAAGTGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCAATCCTGTTGCTGC
66 AGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGC
* *
14511124 AACACTCGGTCTGATCCGATCTTAGAATG
131 AACCCTCGGTCTGGTCCGATCTTAGAATG
14511153 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14511171 TTAGATTGGG
Statistics
Matches: 262, Mismatches: 66, Indels: 15
0.76 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 53 0.20
159 204 0.78
160 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGC
AACCCTCGGTCTGGTCCGATCTTAGAATG
Found at i:14511173 original size:26 final size:26
Alignment explanation
Indices: 14511144--14511196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14511134 CTGATCCGAT
14511144 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
14511170 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14511196 C
1 C
14511197 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14511488 original size:12 final size:12
Alignment explanation
Indices: 14511471--14511500 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14511461 CCCTCTTGCA
14511471 TGCTGCTGATCC
1 TGCTGCTGATCC
*
14511483 TGCTGCTGGTCC
1 TGCTGCTGATCC
14511495 TGCTGC
1 TGCTGC
14511501 AACAACCGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.33, G:0.30, T:0.33
Consensus pattern (12 bp):
TGCTGCTGATCC
Found at i:14511553 original size:26 final size:26
Alignment explanation
Indices: 14511524--14511575 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14511514 CCGGTCCGAT
*
14511524 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14511550 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14511576 GCCAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14512050 original size:157 final size:156
Alignment explanation
Indices: 14511550--14512050 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 156
14511540 GCTCCGTATG
* * * * * *
14511550 CTTAGACATGGAATGAACTCCGTATGGCC-AAGCCAAACCCACGAAACGAGCGTGCGGGCGCTCA
1 CTTAGAC-TGGAATGAACTCCATAT-GCCTAAGCC-AACCCATGAAATGAACGCGCGGGCACTCA
* * ** *
14511614 ACC-GGCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCCTGTGTGCTGTCGAT
63 ACCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT--CCCCCTGCGTGCTGTCGAT
** **
14511678 CCTGCTGTTGCAACCCTCGATCC-ATTTTGAT
126 CCTGCTGCCGCAACCCTCGATCCGA-TCCGAT
** * * * *
14511709 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAACGTGTGGGCACTGAAC
1 CTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAACGCGCGGGCACTCAAC
* * * * *
14511774 CAGCC-GAGAGGCACAATACGCAAACCAGGGATCGGCCTGGTCCCCCTTTACGTGCTGTC-AGTC
65 CAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC--TGCGTGCTGTCGA-TC
* * * * * * **
14511837 CCGCTGCCACAACCCTCGGTCTG-GCTGGGG
127 CTGCTGCCGCAACCCTCGATCCGATC-CGAT
* *** *
14511867 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGCGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAACGCGCGGGCACTCAAC
* * *
14511932 TAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCTGCGTGCTGTCGATCCTG
65 CAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTG
*
14511997 CTGCCGCAACCATCGATCCGATCCGAT
130 CTGCCGCAACCCTCGATCCGATCCGAT
*
14512024 CTTAGACTGGGAGTGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCATATGC
14512051 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
156 6 0.02
157 55 0.20
158 146 0.54
159 64 0.24
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAACGCGCGGGCACTCAACC
AGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCGATCCGATCCGAT
Found at i:14512238 original size:26 final size:26
Alignment explanation
Indices: 14512200--14512252 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14512190 GGCTCAAACT
14512200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14512226 CTTAGACAT-GGAATGAAGTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14512252 C
1 C
14512253 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14512741 original size:26 final size:26
Alignment explanation
Indices: 14512712--14512764 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14512702 TCAGTCTGAT
14512712 CTTAGACT-AGGAATGAACTCTGTATG
1 CTTAGA-TGAGGAATGAACTCTGTATG
* *
14512738 CTTAGATGGGGGATGAACTCTGTATG
1 CTTAGATGAGGAATGAACTCTGTATG
14512764 C
1 C
14512765 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATGAGGAATGAACTCTGTATG
Found at i:14513876 original size:26 final size:26
Alignment explanation
Indices: 14513847--14513897 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14513837 AGTCCGATCT
*
14513847 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTAGGAATGAACTCCGTATGCA
*
14513873 TAGACTATGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
14513898 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCA
Found at i:14514298 original size:159 final size:158
Alignment explanation
Indices: 14514038--14514460 Score: 490
Period size: 158 Copynumber: 2.7 Consensus size: 158
14514028 TTTTAGTCTG
* ** * ** * * *
14514038 GGAATAAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCATTCGGGCACTGAGCC-AGCCGAA
1 GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTGAGCCGA-CCGAA
* * * * *
14514102 GAGGAATAATGCGTAAGCCGGGGATCGACTCGGTCCCCCTCTACATGCTGTCGGTCCCGCTACCA
65 GAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTACATGCTGCCGATCCCACTACCA
*
14514167 CAACCCTCGGTCCGACTGGGGCTTAGACAT
130 C-ACCCTCGATCCGACTGGGGCTTAGACAT
* ** *
14514197 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACAGGCACTGAGCCGACCGAAG
1 GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTGAGCCGACCGAAG
* * *
14514262 AGGCATAATGCACAAGCCGGGGATCGACTCGATCCCCCTCTACATGCTGCCGATCCCACTACGAC
66 AGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTACATGCTGCCGATCCCACTACCAC
**
14514327 ACCCTCGATCCGGTTGGGGCTTAGACAT
131 ACCCTCGATCCGACTGGGGCTTAGACAT
** * * * * **
14514355 GGAATAAACTCGGTATGCCTAAGCCGACCCACGAAACAAGCGTACGGGCA-AGAGGCTGGTCGAA
1 GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTGA-GCCGACCGAA
* * *
14514419 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCT
65 GAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCT
14514461 GCGTATGCTT
Statistics
Matches: 223, Mismatches: 39, Indels: 5
0.84 0.15 0.02
Matches are distributed among these distances:
157 2 0.01
158 111 0.50
159 109 0.49
160 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTGAGCCGACCGAAG
AGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTACATGCTGCCGATCCCACTACCAC
ACCCTCGATCCGACTGGGGCTTAGACAT
Found at i:14515246 original size:171 final size:172
Alignment explanation
Indices: 14515023--14515583 Score: 532
Period size: 171 Copynumber: 3.4 Consensus size: 172
14515013 GGAGAGGCCG
* * * * * *
14515023 GTCGGAGAGGCATAATGTGCAAGCTGGGGATTAGCTCGATCCCCCTCTGCGTGCTGTCGATCCCG
1 GTCGGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCA
* * * * *
14515088 CTGCCAGTCCTGCTGCCATAACCTTCGGTCCGACTGGGGCTTGGACATGGAATGAACTTCGTATG
66 CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATG
* * * * *
14515153 CCTAGGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC-CA
131 CCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACTCA
* * *
14515194 GTCGGAGAGGTAGAATGCGCAAGCTAGGGATCAGCCCGATCCCCTTCTGCGTGCTGTTGATCCCA
1 GTCGGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCA
*
14515259 CTGTCAGTCCTGCTGCCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATG
66 CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATG
** *
14515324 CCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAACTTA
131 CCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACTCA
* * * * * *
14515366 -TCGGAGAGGTAGATTGCACAAGCCGGGGACCAGCCCAATCCCCC-CTGC-T--TGTTG-T--CA
1 GTCGGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCA
* * * * * * *
14515423 AT-CC--TACTGCTG---CAACCCTCGATCCAATCCGA-TCTTAGAC-TGGGAATGAACTCCATA
66 CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGA-CTGAGGCTTAGACAT-GGAATGAACTCCGTA
* * * * * *
14515480 TGCCTAAGTCAACCTA-GAAAATGAGCGTACGGGCGCTGAGC-CA
129 TGCCTAAGCCAACCCACG-AAACGAGCGTACGGGCACTCAACTCA
* * ** *
14515523 ATCGGAGAGGTAGAATGAGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
1 GTCGGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
14515584 TTGCTGCTAC
Statistics
Matches: 327, Mismatches: 53, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.01
158 108 0.33
159 4 0.01
161 11 0.03
162 1 0.00
163 1 0.00
164 3 0.01
166 1 0.00
167 5 0.02
169 1 0.00
170 4 0.01
171 184 0.56
172 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (172 bp):
GTCGGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCA
CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACTCA
Found at i:14515689 original size:158 final size:157
Alignment explanation
Indices: 14515298--14515734 Score: 448
Period size: 158 Copynumber: 2.8 Consensus size: 157
14515288 CCGACTGAGG
* * * * *
14515298 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAG
* * * * * *
14515362 CTTATCGGAGAGGTAGATTGCA-CAAGCCGGGGACCAGCCCAATCCCCCCTGCTTGTTGTCAATC
65 C-TATCGGAGAGGTAGAATG-AGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATC
*
14515426 CTACTGCTGCAACCCTCGATCCAATCCGAT
128 CTACTGCTACAACCCTCGATCCAATCCGAT
* * * *
14515456 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTAGAAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAG-
* * * *
14515521 CAATCGGAGAGGTAGAATGAGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCTT
65 CTATCGGAGAGGTAGAATGAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCT
* * * *
14515586 GCTGCTACAACCCTC-AGTTCGATTCGAT
130 ACTGCTACAACCCTCGA-TCCAATCCGAT
* * * * * *
14515614 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCTTGCAGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAGC
* * * * * * ** *
14515679 TAGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACTTGGTCCCCCCTGCGTGCT
66 TA-TCGGAGAGGTAGAATGAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCT
14515735 ACCGATCCTG
Statistics
Matches: 230, Mismatches: 44, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
157 5 0.02
158 224 0.97
159 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAGC
TATCGGAGAGGTAGAATGAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCTA
CTGCTACAACCCTCGATCCAATCCGAT
Found at i:14516193 original size:159 final size:157
Alignment explanation
Indices: 14515811--14516271 Score: 439
Period size: 159 Copynumber: 2.9 Consensus size: 157
14515801 TTTCGTATGG
* * * *
14515811 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGGAATGAGCGTGCGGGCGCTCAGCC
* * * * * *
14515876 GATCGGAGAGGCAATATGTGCAAGTCGATGACCGGCCCGATCCCTCCTGCGTGCTATCGATCCTG
66 GATCGGAGAGGCAA-ATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTG
* * *
14515941 CTGCCACAACCCTCAGTCCAGTCTGATC
130 CTACCACAACCCTCAGTCCAGACTGAGC
* * * * ** * * *
14515969 TTAGAC-TAGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTTTGGACGTTGAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGGAATGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14516033 CGACCGAAGAGGGATAATGTGCAAGCC-AGGGATCGGCCTGGTCCCCCTCTGTATGTTGTCGGT-
65 CGATCGGAGAGGCA-AATGTGCAAGCCGA-GGATCGGCCCGGTCCCCC-CTGCATGCTATCGATC
*
14516096 CTCGCTACCACAACCCTC-GATCC-GACTGGGGC
127 CT-GCTACCACAACCCTCAG-TCCAGACT-GAGC
*
14516128 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAATG-GACGTGCGGGCGCTCAGC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGGAATGAG-CGTGCGGGCGCTCAGC
* * * * *
14516192 CGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGTTATCGATCCA
65 CGATCGGAGAGGCA-AATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCT
**
14516257 GCTACCGTAACCCTC
129 GCTACCACAACCCTC
14516272 GGAACGAGAG
Statistics
Matches: 240, Mismatches: 52, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 116 0.48
159 120 0.50
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGGAATGAGCGTGCGGGCGCTCAGCC
GATCGGAGAGGCAAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGC
TACCACAACCCTCAGTCCAGACTGAGC
Found at i:14516686 original size:158 final size:158
Alignment explanation
Indices: 14516402--14516692 Score: 329
Period size: 158 Copynumber: 1.8 Consensus size: 158
14516392 CCGGCTGGGG
* * *
14516402 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
* * * * * * * *
14516467 CGGCCGGAGAGGTAGAATATGCAAGTCGGGGACCAGCCTAGTCCCCCCTGCTTCTTGTCGATCCT
66 CAGCCAGAGAGGCAGAATATGCAAGCCAGGGACCAGCCTAGTCCCCCCTACTGCTTATCGATCCT
14516532 GCTACTACAACCCTCGATCCGATCTAAT
131 GCTACTACAACCCTCGATCCGATCTAAT
* * * * ** *
14516560 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* *
14516624 CCAGCCAGAGAGGCAGAATGA-GCAAGCCAGGGATCAG-CTCGGTCCCCCCTACATGC-TATCGA
65 CCAGCCAGAGAGGCAGAAT-ATGCAAGCCAGGGACCAGCCT-AGTCCCCCCTAC-TGCTTATCGA
*
14516686 TCTTGCT
127 TCCTGCT
14516693 GTCGCAACCC
Statistics
Matches: 108, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.03
158 102 0.94
159 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
CAGCCAGAGAGGCAGAATATGCAAGCCAGGGACCAGCCTAGTCCCCCCTACTGCTTATCGATCCT
GCTACTACAACCCTCGATCCGATCTAAT
Found at i:14516944 original size:26 final size:26
Alignment explanation
Indices: 14516915--14516967 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14516905 CCGGTCTGAT
14516915 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14516941 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14516967 C
1 C
14516968 CTGAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14517514 original size:317 final size:316
Alignment explanation
Indices: 14516940--14517515 Score: 681
Period size: 317 Copynumber: 1.8 Consensus size: 316
14516930 AACTCCGTAT
* * * * * *
14516940 GCTTAGACATGGAATGAACTTCGTATGCCTGAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
14517005 TCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCAATCCCCCTTTGTGCAATCGATCCT
66 TCGATCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCAATCCCCCTCTGTGCAATCAATCCT
** * * *
14517070 GCTATTGCAACCCTCAGTTCGGTCCAATCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAAC
131 GCTACCGCAACCATCAGTCCGATCCAATCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * *
14517135 CCACGAAACGAGCGTGCGGGTGTTGAGCCAGCTGAAGAGGCATAATGTGTAAGCCGGGGATCGAC
196 CCACGAAACGAGCGTGCGAGCGCTCAGCCACCAGAAGACGCAGAATGCGTAAGCCGGGGATCGAC
14517200 CCGGTCCCCCTCTGCGTGCTACCGATCTCACTGCCACAACACTCGATCTGACTGGG
261 CCGGTCCCCCTCTGCGTGCTACCGATCTCACTGCCACAACACTCGATCTGACTGGG
* * * * *
14517256 GCTTAGACATGGAATAAACTCCATGTGCCTAAGCTAACCCACGAAATGGGCGTGTGGGCGCTCTG
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * **
14517321 TCGATCGGAGAGGCAGCATGCGTAAG-TCGAGGATCAGCCCATTCCCCC-CTGCATGCTGTCAAT
66 TCGATCAGAGAGGCAGAATGCGCAAGCT-GAGGATCAGCCCAATCCCCCTCTG--TGCAATCAAT
* ** *
14517384 CCTGCTACCGCAACCATCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTC
128 CCTGCTACCGCAACCATCAGTCCGATCCAATCTTAGACTACGAATGAACTCCGTATGCCTAAGTC
** * * *
14517449 AACCCACGAAATTAGCGTGTGAGCGCTCAGCCGACCAG-AGACGCAGGATGCGTAAGCTGGGGAT
193 AACCCACGAAACGAGCGTGCGAGCGCTCAGCC-ACCAGAAGACGCAGAATGCGTAAGCCGGGGAT
14517513 CGA
257 CGA
14517516 ACGGGTGGTA
Statistics
Matches: 210, Mismatches: 46, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
315 3 0.01
316 92 0.44
317 112 0.53
318 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (316 bp):
GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCGATCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCAATCCCCCTCTGTGCAATCAATCCT
GCTACCGCAACCATCAGTCCGATCCAATCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGAGCGCTCAGCCACCAGAAGACGCAGAATGCGTAAGCCGGGGATCGAC
CCGGTCCCCCTCTGCGTGCTACCGATCTCACTGCCACAACACTCGATCTGACTGGG
Found at i:14518148 original size:26 final size:26
Alignment explanation
Indices: 14518110--14518162 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14518100 GGCTCAAAAT
14518110 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14518136 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14518162 C
1 C
14518163 CTGAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14519546 original size:158 final size:158
Alignment explanation
Indices: 14519248--14519738 Score: 373
Period size: 158 Copynumber: 3.1 Consensus size: 158
14519238 GCTTAGACAT
* * ** *
14519248 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGTGCTCAGCCGGCTTGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGCCGCTCAGCCGGCTGGAG
* * * * * *
14519313 AGGCAAAATGTGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTATTGATCTTGCTGCCGCA
66 AGGCAAAATGCGCAAGCCGGGGATCGGCCAGATCCCCCCTGCGTGCTATCGATCCTGCTACCACA
* *
14519378 ACCTTTGGTCCGGTCTGATCTTTGACTG
131 ACCCTCGGTCCGGTCTGATCTTTGACTG
* * * * * *
14519406 GGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGCCGCTGAGCCAG-TCGGA
1 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGCCGCTCAGCCGGCT-GGA
* * * * * *
14519470 GAGGCATAATGCGCAAGCCGGGGATTGGTCAG-TCCCCTTCTGTGTGCTGTCGATCCTGCTACCA
65 GAGGCAAAATGCGCAAGCCGGGGATCGGCCAGATCCCC-CCTGCGTGCTATCGATCCTGCTACCA
* ** * *
14519534 TAACCCTCGGTCCGG-CTAGGGCTTAGA-TAT
129 CAACCCTCGGTCCGGTCT-GATCTTTGACT-G
* * * * * ** ** * *
14519564 GGAATGAACTCCCTATGCCTAAGCCAACCGACGAAATGATG-GTGTGGGTGCTCAGCCGACCGGA
1 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGA-GCGTACGGCCGCTCAGCCGGCTGGA
* * * * * * * * * * **
14519628 GAGGCAGAATGCGCAAGCTGGGGATTGGTTCTG-TTCCCCCTACGTGCTACCGATCCTACTGCTG
65 GAGGCAAAATGCGCAAGCCGGGGATCGG-CCAGATCCCCCCTGCGTGCTATCGATCCTGCTACCA
** **
14519692 CAACCCTCGGTTTGGTCTGATCTTACACTG
129 CAACCCTCGGTCCGGTCTGATCTTTGACTG
14519722 GGAATGAACTCCGTATG
1 GGAATGAACTCCGTATG
14519739 TCGGTCAGAG
Statistics
Matches: 260, Mismatches: 64, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 9 0.03
158 240 0.92
159 11 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGCCGCTCAGCCGGCTGGAG
AGGCAAAATGCGCAAGCCGGGGATCGGCCAGATCCCCCCTGCGTGCTATCGATCCTGCTACCACA
ACCCTCGGTCCGGTCTGATCTTTGACTG
Found at i:14519875 original size:26 final size:27
Alignment explanation
Indices: 14519839--14519889 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
14519829 AATCTTACAC
*
14519839 TGGGAATGAACTTCGTATG-CTAAGAT
1 TGGGAATGAACTCCGTATGCCTAAGAT
*
14519865 TGGGGATGAACTCCGTATGCCTAAG
1 TGGGAATGAACTCCGTATGCCTAAG
14519890 TCAACCCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (27 bp):
TGGGAATGAACTCCGTATGCCTAAGAT
Found at i:14520883 original size:159 final size:157
Alignment explanation
Indices: 14520589--14521083 Score: 363
Period size: 159 Copynumber: 3.1 Consensus size: 157
14520579 TGCTTAGACA
** * * * * * * * *
14520589 TGGAATGAACTCCGTATGCCTAAGCCAAATCATGAAACGAGCGTGCAGGCGCTCAACCGGTCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAAACGGCCGAA
* * * * * * * * * ** **
14520654 GAGGA-AGAATGCACAAGCCGGGGATCGACTCGGTCCCCCCATACGTGCTATCGATGCTGCTGTC
66 GA-GACAAAATGCGCAAGTCGGGGATCGACCCGAT-CCCCCTTGCGTGCTACCGATCCCACTACC
* *
14520718 GAAACCCTCAGTTCGGTCTGATCTTAGAAT
129 GCAACCCTCGGTTCGGTCTGATCTTAG-AT
* * ** ** ** * * *
14520748 TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATTAGTGTACGGGTGCT-GAGCTGGCCGG
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAAAC-GGCCGA
* * * *
14520812 AGAGGCATAATGCGCAAGTCGGGGATC-AGCTCGATCCCCCTCTGCGTGCTACC-AGTCCCGCTA
65 AGAGACAAAATGCGCAAGTCGGGGATCGA-CCCGATCCCCCT-TGCGTGCTACCGA-TCCCACTA
* * *
14520875 CGGCAACCCTCGGTCCGG-CTGGGTCTTAG-T
127 CCGCAACCCTCGGTTCGGTCT-GATCTTAGAT
* * * * *
14520905 CATGGAATGAACTCCCTATCCCTCAGCCAACCCACGAAACGGGCATCCGGGCACTCAAACGGCCG
1 --TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAAACGGCCG
* * ** *
14520970 AAGAGACAAAATGCGTAAGTCGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTACTACC
64 AAGAGACAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCTTGCGTGCTACCGATCCCACTACC
14521035 GCAACCCTCGGTTCGGTCTGATCTTAGAT
129 GCAACCCTCGGTTCGGTCTGATCTTAGAT
*
14521064 TGGGAATGAACTCTGTATGC
1 T-GGAATGAACTCCGTATGC
14521084 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 60, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
157 2 0.01
158 65 0.25
159 192 0.73
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAAACGGCCGAA
GAGACAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCTTGCGTGCTACCGATCCCACTACCGC
AACCCTCGGTTCGGTCTGATCTTAGAT
Found at i:14521086 original size:26 final size:26
Alignment explanation
Indices: 14521057--14521109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14521047 TCGGTCTGAT
* *
14521057 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14521083 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14521109 C
1 C
14521110 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14521964 original size:159 final size:158
Alignment explanation
Indices: 14521450--14522017 Score: 500
Period size: 159 Copynumber: 3.6 Consensus size: 158
14521440 ACTCTGTACG
* * * * ** * ** *
14521450 CTTAGACAT-GGAATGAACTCCATATGCCAAAGCCAACCCATGAAACAAGCATGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
* * * * *
14521514 TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCTGCCCGATCCCCCCTACGTGCTGTTGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGCTGATCC
* * **
14521579 TGCTGCCGTAACCCTCGGTCTAGTCCAAT
130 TGCTGCCATAACCCTCGGTCTGGTCTGAT
** **
14521608 CTTAGACTGGGAATGAACTCCGTATGGTTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGC
* * * ** * * * * *
14521673 CAACCGGAGAGGCATAATGCGTAAG-TTGAGGATCGGCTCGGTCCCCCTCTATGTGCTGCCGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAG-GGATCAGCCCGATCCCCC-CTACGTGCTGCTGATC
* * **
14521737 CCGCTGCCACAACCCTCGGTCTGG-CTGGGG
129 CTGCTGCCATAACCCTCGGTCTGGTCT-GAT
* * *
14521767 CTGAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT-AGACGTGCGGGCACTCG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG-CGTGCGGGCACT-G
* * * *
14521830 A-CCGGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGATGCTGA
63 AGCC-GACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGCTGA
* * *
14521894 TCCTACTGCCATAACCTTCGATCTGGTCTGAT
127 TCCTGCTGCCATAACCCTCGGTCTGGTCTGAT
** * * * * * *
14521926 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACAAAATGAGCATACGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGC
* **
14521991 CGACCAGAGAGGCAGGCTGCGCAAGCC
66 CGACCGGAGAGGCAGAATGCGCAAGCC
14522018 GAGGATCGAA
Statistics
Matches: 322, Mismatches: 75, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 114 0.35
159 164 0.51
160 41 0.13
161 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGC
CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGCTGATCCT
GCTGCCATAACCCTCGGTCTGGTCTGAT
Found at i:14522962 original size:171 final size:170
Alignment explanation
Indices: 14522649--14522975 Score: 372
Period size: 171 Copynumber: 1.9 Consensus size: 170
14522639 CTCCATATGC
* ** *
14522649 TTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCATGAAATGAGCGTACGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCAAACCCAACCCACAAAATGAGCGTACGGGCGCTCAGCC
* * * *
14522714 GGCCGGAGAGGCATAATGTGCAAGCCGAGGATCAACCCGATCCCCCTCGACGTGCTACCGATCTC
66 GACCGGAGAGGCAAAATGTCCAAGCCGAGGATCAACCAGATCCCCCTCGAC-TGCTACCGATCTC
* *
14522779 GCTGCCGGTCCTGCTACCACAACCCTCTGTCCGACTGGCGG
130 ACTACCGGTCCTGCTACCACAACCCTCTGTCCGACTGGCGG
* * * * *
14522820 TTAGACATGGAATTAACTCCGTATGCCAAAGCCAACCCACAAAATGAGCGTGCGGGTGGTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCAAACCCAACCCACAAAATGAGCGTACGGGCGCTCAGCC
* * * * * **
14522885 GACCGGAGAGGCAAAATG-CCTAAGTCGGGGATCGACCAGGTCCCCCCTTGTA-TGCTGTCGATC
66 GACCGGAGAGGCAAAATGTCC-AAGCCGAGGATCAACCAGAT-CCCCCTCG-ACTGCTACCGATC
* *
14522948 -CTACTACTGGTCCTGCTACCAGAACCCT
128 TC-ACTACCGGTCCTGCTACCACAACCCT
14522976 TCGTCTGGTC
Statistics
Matches: 128, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
170 2 0.02
171 118 0.92
172 7 0.05
173 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (170 bp):
TTAGACATGGAATGAACTCCGTATGCCAAACCCAACCCACAAAATGAGCGTACGGGCGCTCAGCC
GACCGGAGAGGCAAAATGTCCAAGCCGAGGATCAACCAGATCCCCCTCGACTGCTACCGATCTCA
CTACCGGTCCTGCTACCACAACCCTCTGTCCGACTGGCGG
Found at i:14523392 original size:26 final size:26
Alignment explanation
Indices: 14523340--14523392 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14523330 CCGGTTTGAT
*
14523340 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
14523366 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
14523392 C
1 C
14523393 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14524098 original size:26 final size:26
Alignment explanation
Indices: 14524061--14524113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14524051 GGCTCAAACT
*
14524061 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
14524087 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14524113 C
1 C
14524114 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14524296 original size:26 final size:26
Alignment explanation
Indices: 14524258--14524308 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14524248 CTGGTTTGAT
14524258 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
14524284 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
14524309 GGCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:14524414 original size:197 final size:197
Alignment explanation
Indices: 14524060--14524417 Score: 558
Period size: 197 Copynumber: 1.8 Consensus size: 197
14524050 TGGCTCAAAC
* * *
14524060 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCGTATCCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
14524125 AACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCC
66 AACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGACCGGCC
*
14524190 TGGTCTCCCCCTGCGTGCTACCGATCCTACTACTAGTCCTACTACCGCAACCCTCGATCTGGTTT
131 TGGTCTCCCCCTACGTGCTACCGATCCTACTACTAGTCCTACTACCGCAACCCTCGATCTGGTTT
14524255 GA
196 GA
* *
14524257 TCTTAGACTAGGAATGAACTCCGTATCCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCGTATCCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
14524322 AATGAAACGAGCGTGTGGGCACTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCC-GAGGACCGGC
66 AACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCAG-GGACCGGC
**
14524386 CTGGTC-CCCCCTTACGTGCTGTCGATCCTACT
130 CTGGTCTCCCCC-TACGTGCTACCGATCCTACT
14524418 GTCGCAACCA
Statistics
Matches: 145, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
196 6 0.04
197 139 0.96
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (197 bp):
TCTTAGACTAGGAATGAACTCCGTATCCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACC
AACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGACCGGCC
TGGTCTCCCCCTACGTGCTACCGATCCTACTACTAGTCCTACTACCGCAACCCTCGATCTGGTTT
GA
Found at i:14524640 original size:159 final size:159
Alignment explanation
Indices: 14524285--14524648 Score: 387
Period size: 159 Copynumber: 2.3 Consensus size: 159
14524275 CTCCGTATCC
* * * ** *
14524285 TTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCAATGAAACGAGCGTGTGGGCACTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGCC
* * * *
14524350 GGTCGGAGAGGTAGAATGCGCAAGCCGAGGACCGGCCTGGTCCCCCCTTACGTGCTGTCGATCCT
66 GATCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCTGGTCCCCCCTTACGTCCTGCCGATCCT
* *
14524415 ACTGTCGCAACCATTGATCCGATCCAATA
131 ACTGCCACAACCATTGATCCGATCCAATA
* * * *
14524444 TTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGC
* * *
14524508 CGATCGGAGAGGCATAATGCGCAAGCC-AGGGATCGGCCTGGT-CCCCCTCTGCGTCCTGCCGAT
65 CGATCGGAGAGGCAGAATGCGCAAGCCGA-GGACCGGCCTGGTCCCCCCT-TACGTCCTGCCGAT
* * ** *
14524571 CCTGCTGCCACAACTC-TTGGTCCGAGTGGAGT-
128 CCTACTGCCACAAC-CATTGATCCGA-TCCAATA
* * * * *
14524603 TTAGACATAGAATGAACTCCCTGTGCCTTAGCCAACCCACGAAATG
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATG
14524649 GGGGTGCGGC
Statistics
Matches: 168, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
158 8 0.05
159 155 0.92
160 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGCC
GATCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCTGGTCCCCCCTTACGTCCTGCCGATCCT
ACTGCCACAACCATTGATCCGATCCAATA
Found at i:14525548 original size:27 final size:25
Alignment explanation
Indices: 14525498--14525550 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 25
14525488 GCTCAAAACT
14525498 CTTAGACTGGGAAGAACTTCGTATG
1 CTTAGACTGGGAAGAACTTCGTATG
14525523 CTTAGACATGGGAATGAAC-TCTGTATG
1 CTTAGAC-TGGGAA-GAACTTC-GTATG
14525550 C
1 C
14525551 CTAGGCTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 7 0.28
26 8 0.32
27 10 0.40
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGAAGAACTTCGTATG
Found at i:14526705 original size:158 final size:156
Alignment explanation
Indices: 14526228--14526727 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 156
14526218 ACTCCGTACG
* * * * * *
14526228 CTTAGAC-ATGGAATGAACTCTGTATGCCTACGCCAACCCACGAAATGAGCGTGACGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATG-CGGGGCTGAG
* * * * * * * *
14526292 CCGGAT-GGAGAGGC-GAAATGCACAAGTCGGGGACCGACCCTGATCCC-CCTGTGTGCTGTCGA
64 CC-AATCGAAGAGGCAG-AATACGCAAGCCGGGGATCGA-CCTGATCCCTCCTGCGTGATGTCGA
*
14526354 TCTTGCTACCACAACCCTCGGTCTGGTCCGAT
126 TCCTGCTACCACAACCCTCGGTCT-GTCCGAT
* * * * * *
14526386 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTTCGGGTCTGAGCC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGGCTGAGCC
* * * * * *
14526451 AATCGAAGAGGCATAATGCGCAAGTCGGGGATCG-GCTCGATCCCAT-CTACGT-ACTATCGATC
66 AATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCT-GATCCC-TCCTGCGTGA-TGTCGATC
** * * **
14526513 CCACTACCACAACCCTCGGTCTGGCTGGGG
128 CTGCTACCACAACCCTCGGTCTGTC-CGAT
* * * *
14526543 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGAGCTTAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGG-GCTGAGC
* * *
14526608 CAGTCGAAGAGGCAGAATACGTAAGCCGGGGATCGACCTGATCCCTCCTGCATGATGTCGATCCT
65 CAATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCTGATCCCTCCTGCGTGATGTCGATCCT
* * *
14526673 GCTGCCGCAACCCTCGGTCCGATCCGAT
130 GCTACCACAACCCTCGGTCTG-TCCGAT
* *
14526701 CTTAGACTGGGAAGGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
14526728 TTAGACTAGC
Statistics
Matches: 270, Mismatches: 59, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
155 2 0.01
156 10 0.04
157 115 0.43
158 139 0.51
159 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGGCTGAGCC
AATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCTGATCCCTCCTGCGTGATGTCGATCCTG
CTACCACAACCCTCGGTCTGTCCGAT
Found at i:14527374 original size:159 final size:157
Alignment explanation
Indices: 14527021--14527514 Score: 505
Period size: 157 Copynumber: 3.1 Consensus size: 157
14527011 ACTCCGTATC
* * * *
14527021 CTTAGGCATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
* * * * * * *
14527086 CGACCAGTGAGGTAGAATGCGCAAGCCGAGGA-CTGACCCAGT-CCCCCTGCGTGCTATCGATCC
66 CGACCAGAGAGGCATAATGCGCAAG-CGGGGATC-GGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
14527149 TGCTACCACAACCCTCAGTCCGATCTGAT
129 TGCTGCCACAACCCTCGGTCAGATCTGAG
* * * *
14527178 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGAAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
* * * *
14527242 TCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCATCCTGTCGATC
65 CCGACCAGAGAGGCATAATGCGCAAGC-GGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATC
** * * *
14527307 CCACTGCCACAGCCCTCGGTCAGGT-TGGGG
128 CTGCTGCCACAACCCTCGGTCAGATCT-GAG
* * * * * *
14527337 CTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCATGAAACGGGTGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
* * *
14527402 CGATCAGAGAGGCATAATGCGCAAACAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
66 CGACCAGAGAGGCATAATGCGCAAGCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
* * *
14527467 CTGCCTCAACCCTCGGTCCTG-TCTGAT
131 CTGCCACAACCCTCGGT-CAGATCTGAG
*
14527494 TTTAGAC-TGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
14527515 ACATGCTTAG
Statistics
Matches: 275, Mismatches: 52, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 136 0.49
158 28 0.10
159 107 0.39
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
CGACCAGAGAGGCATAATGCGCAAGCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCAGATCTGAG
Found at i:14528254 original size:26 final size:26
Alignment explanation
Indices: 14528216--14528268 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14528206 GGCTCAAACT
14528216 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14528242 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14528268 C
1 C
14528269 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14529039 original size:197 final size:196
Alignment explanation
Indices: 14528703--14529056 Score: 435
Period size: 197 Copynumber: 1.8 Consensus size: 196
14528693 TGGCTCAAAC
* * **
14528703 TCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAGG
1 TCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
* * * * * *
14528768 CACAAAATGGGCGTGCGGGTGCTCAGCCGATCAGAAAGGCAGAATACACAAGCCGGGGATAGGCC
66 CACAAAATGAGCGTGAGGGTGCTCAACCGACCAGAAAGGCAGAATACACAAGCCAGGGATAGACC
**
14528833 CGGTCCCCCCCTGCGTGCTGTCGATCCTACAGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCT
131 CAAT-CCCCCCTGCGTGCTGTCGATCCTACAGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCT
14528898 GA
195 GA
* *
14528900 TCTTAGATTAGGAATGAACT-TCGTATGCTTAGACATGGAATGAAC-TCTATATGCCTAAGCCAA
1 TCTTAGACTAGGAATGAACTCT-ATATGCTTAGACATGGAATGAACTTC-ATATGCCTAAGCCAA
* * * * * * * * *
14528963 CCCACGAAATGAGCGTGAGGGTGCTCAATCGGCCGGAGAGGC-GAAATGCGCAAGTCAGGGATCG
64 CCCACAAAATGAGCGTGAGGGTGCTCAACCGACCAGAAAGGCAG-AATACACAAGCCAGGGATAG
*
14529027 ATCCAATCCCCCCTGCGTGCTGTCGATCCT
128 ACCCAATCCCCCCTGCGTGCTGTCGATCCT
14529057 GTTGCCGCAA
Statistics
Matches: 130, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
196 27 0.21
197 103 0.79
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (196 bp):
TCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
CACAAAATGAGCGTGAGGGTGCTCAACCGACCAGAAAGGCAGAATACACAAGCCAGGGATAGACC
CAATCCCCCCTGCGTGCTGTCGATCCTACAGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCTG
A
Found at i:14529318 original size:159 final size:156
Alignment explanation
Indices: 14528926--14529365 Score: 461
Period size: 157 Copynumber: 2.8 Consensus size: 156
14528916 AACTTCGTAT
* * * *
14528926 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTCAA
1 GCTTAGACGTGGAATGAACTC-ATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
* * *
14528991 TCGGCCGGAGAGGCGAAATGCGCAAGTCAGGGATCGATCCAATCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGC-AAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * * **
14529056 TGTTGCCGCAACCCTCGGTCTGGTTCGA
129 CGCTACCGCAACCCTCAGTCCGACTCGA
* * * * * *
14529084 TCTTAG--GTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGA
1 GCTTAGACGT-GGAATGAAC-TCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCA
* * * * * *
14529147 GCAGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGGT
64 GCCGGCCGGAGAGGCA-AATGCGCAAGTCAGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGAT
* * *
14529212 CCCGCTATCGCAACCCTCAGTCCGACTGGG
127 CCCGCTACCGCAACCCTCAGTCCGACTCGA
* * *
14529242 GCTTAGACGTGGAATGAACTCACTATGCCTAAGCCAACCCATAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACGTGGAATGAACTCA-TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
* * * * *
14529307 CCGGTCAGAGAGGCAGAATGCGGAAGTCAGGGATCGGCCTGATCCCCCCTGCGTGCTGT
65 CCGGCCGGAGAGGCA-AATGCGCAAGTCAGGGATCGACCCGATCCCCCCTGCGTGCTGT
14529366 TGAGATGGCA
Statistics
Matches: 226, Mismatches: 49, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
156 2 0.01
157 83 0.37
158 57 0.25
159 82 0.36
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACGTGGAATGAACTCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
CGGCCGGAGAGGCAAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCG
CTACCGCAACCCTCAGTCCGACTCGA
Found at i:14533590 original size:26 final size:26
Alignment explanation
Indices: 14533552--14533604 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14533542 GGCTCAAAAT
14533552 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14533578 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14533604 C
1 C
14533605 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14533765 original size:26 final size:26
Alignment explanation
Indices: 14533736--14533788 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14533726 TCGGTCCGAT
14533736 CTTAGACCT-GGAATGAACTCCGTATG
1 CTTAGA-CTGGGAATGAACTCCGTATG
* *
14533762 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14533788 C
1 C
14533789 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14534062 original size:26 final size:26
Alignment explanation
Indices: 14534033--14534085 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14534023 CCGGTCCGAT
14534033 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14534059 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14534085 C
1 C
14534086 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14534119 original size:297 final size:297
Alignment explanation
Indices: 14533581--14534145 Score: 830
Period size: 297 Copynumber: 1.9 Consensus size: 297
14533571 CCGTATGCTT
** * *
14533581 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGA
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
* * *
14533646 TCGGAGAGGTAGAATACGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCAATCCTGCT
66 CCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTGTCAATCCTGCT
* *
14533711 GTCGCAACCCTCAGCTCGGTCCGATCTTAGACCTGGAATGAACTCCGTATGCTTAGACTGGGGAT
131 GTCGCAACCCTCAGCCCGGTCCGATCTTAGACCTGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * *
14533776 GAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGGGCTGAGCCGGTCGGAGAGGCA
196 GAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGGGCTGAGCCAGCCGGAGAGGCA
14533841 TAATGCGCTGCCACAACCCTCGGTTCGACTGGGGCTG
261 TAATGCGCTGCCACAACCCTCGGTTCGACTGGGGCTG
14533878 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCAGCCG
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCG
* * * * * * * *
14533942 ACCGGAGAGGCAGAATGCGTAAGCCAAGGATC-AGCCTGGTCCCCCTTGCGTGCTGTCGATGCTG
65 ACCGGAGAGGCAGAATACGCAAGCCAAGGATCGA-CCCGATCCCCCCTACGTGCTGTCAATCCTG
* * *
14534006 TTGTTGCAACCCTCGGCCCGGTCCGATCTTAGA-CTGGGAATGAACTCCGTATGCTTAGACTGGG
129 CTGTCGCAACCCTCAGCCCGGTCCGATCTTAGACCT-GGAATGAACTCCGTATGCTTAGACTGGG
* * * *
14534070 AATGAACTCCGTATGCCTAAGTCAACCCATTAAATGAGCGTGTGGGGGCTGAGTCAGCCGGAGAG
193 AATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGGGCTGAGCCAGCCGGAGAG
*
14534135 GCGTAATGCGC
258 GCATAATGCGC
14534146 AAGCCGGGGA
Statistics
Matches: 237, Mismatches: 28, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
296 4 0.02
297 233 0.98
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (297 bp):
AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
CCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTGTCAATCCTGCT
GTCGCAACCCTCAGCCCGGTCCGATCTTAGACCTGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGGGCTGAGCCAGCCGGAGAGGCA
TAATGCGCTGCCACAACCCTCGGTTCGACTGGGGCTG
Found at i:14534389 original size:26 final size:26
Alignment explanation
Indices: 14534353--14534405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14534343 CCGGTCCTAT
*
14534353 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
14534379 CTTAGACTGGGGATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
14534405 C
1 C
14534406 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:14535111 original size:26 final size:26
Alignment explanation
Indices: 14535073--14535125 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14535063 GGCTCAAAAT
14535073 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14535099 CTTAGAC-ATGGAATGCACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
14535125 C
1 C
14535126 CCAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14535511 original size:159 final size:157
Alignment explanation
Indices: 14535098--14535537 Score: 415
Period size: 159 Copynumber: 2.8 Consensus size: 157
14535088 AACTCCATAT
* * * * *
14535098 GCTTAGACATGGAATGCACTCCGTATGCCCAAGCCAACCCATGGAACAAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14535163 CCGATTGGAGCGACAGAATGCGCAAGCCGAGGAAGGCCCGGT-CCCCTCT-TCGTGCTGTTGATC
66 CCGATTGAAGAGACAGAATGCGCAAG-CGGGGACGGCCCGATCCCCCTCTGT-GTGCTGCTGATC
* * * *
14535226 CTACTGCCATAACCCTCGATCTAGTCTAA
129 CCACTGCCACAACCCTCAATCTAGGCTAA
* * * * * * *
14535255 TCTTAGAC-TGGCAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * *
14535319 GCCTG-CCGAAGAGGCATAATGCGCAAGGCGGGGATCGGCCCGATCCCCCTCTGTGTGCTGCTGG
65 GCC-GATTGAAGAGACAGAATGCGCAA-GCGGGGA-CGGCCCGATCCCCCTCTGTGTGCTGCTGA
* * **
14535383 TCCCGCTGCCACAACCCTCAATC-CGGCTGGG
127 TCCCACTGCCACAACCCTCAATCTAGGCT-AA
* * *
14535414 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
14535479 CCGATTGAAGAGATAGAATGTGTAAGCTGGGGACCGGCCCGATCCCCC-CTGCGTGCTGC
66 CCGATTGAAGAGACAGAATGCGCAAGC-GGGGA-CGGCCCGATCCCCCTCTGTGTGCTGC
14535538 CGAGCCTGCT
Statistics
Matches: 225, Mismatches: 48, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 72 0.32
158 25 0.11
159 121 0.54
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGATTGAAGAGACAGAATGCGCAAGCGGGGACGGCCCGATCCCCCTCTGTGTGCTGCTGATCCC
ACTGCCACAACCCTCAATCTAGGCTAA
Found at i:14536333 original size:26 final size:26
Alignment explanation
Indices: 14536296--14536347 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14536286 GCTTAAAATA
*
14536296 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14536322 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
14536348 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14537050 original size:26 final size:26
Alignment explanation
Indices: 14537000--14537051 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14536990 GCCCAAACTT
**
14537000 TTAGAATAGGAATGAACTCTGTATGC
1 TTAGAATAGGAATGAACTCCATATGC
14537026 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGA-ATAGGAATGAACTCCATATGC
14537052 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGAATAGGAATGAACTCCATATGC
Found at i:14537056 original size:704 final size:702
Alignment explanation
Indices: 14535711--14537110 Score: 2153
Period size: 704 Copynumber: 2.0 Consensus size: 702
14535701 CGAGTAGTCA
* *
14535711 GTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTGAATTCAT
1 GTGGGTTCAAACACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTAAATTCAT
* ** *
14535776 ACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCGTTTTATTTTTTTCATG
66 ACAATGGTCCCCTAAGCCTTCATATGAAGTTTCGTGGCAAGACAACCCGTTTTATTTTTTTCACG
* * *
14535841 ATTTTCGAAACTTTTTACAGTTCGAGATTTTTTAAATTTTTTTAGAAAGAGTTTTGACCCCAAAT
131 ATTTTCGAAACCTTTCACAATTCGAGATTTTTTAAATTTTTTTAGAAAGAGTTTTGACCCCAAAT
* * * * *
14535906 TTGGTAGAGGTGATCCTTATATTTTGTTTGGCATGCACAAAAAAATTCAGTTGAAAATTCAAAGT
196 TCGGTAGAGGTGATCCTTATATTTTGTATGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
*
14535971 GGAGAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
261 GGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14536036 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATA
326 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGAATA
* * *
14536101 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAGCCCCTGGCCC
391 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAGCCCCCGGCCC
* * * * *
14536166 CCCCAATCGTCGGAACCCCCAATGCTATCGGTTAGGCTCTCCGACGATGCTTCGACGATGGTGCC
456 CACCAATCGCCGGAACCACCAATGCCATCGGTTAGGCTCTCCGACGATGCTTCGACAATGGTGCC
* * * **
14536231 CCAGGCAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTTCAACATGGCTTAAAATA
521 CCAAGCAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCAACATCGCCCAAAATA
* * *
14536296 TTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
586 TTAGAATAGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
*
14536361 CAAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGTAGAATGCGTAAACC
651 CAAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCGTAAACC
*
14536413 GTGGGTTCAAACACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GTGGGTTCAAACACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTAAATTCAT
*
14536478 ACAATGGTCCCCTTAGCCTTCATATGAAGTTTCGTGGCAAGACAACCCGTTTT-TTATTTTTCAC
66 ACAATGGTCCCCTAAGCCTTCATATGAAGTTTCGTGGCAAGACAACCCGTTTTATT-TTTTTCAC
* * *
14536542 GATTTTTGAAACCTTTCGCAATTC-AGGATTTTTTAAAATATTTTTTAGAAAGAGTTTTGTCCCC
130 GATTTTCGAAACCTTTCACAATTCGA-GATTTTTT-AAAT-TTTTTTAGAAAGAGTTTTGACCCC
* * * *
14536606 AAATTCGGTAGAGGTGATCCTTGTATTTT-TGATGGCATTCATAAAAAACTTCAGCTAAAAACTC
192 AAATTCGGTAGAGGTGATCCTTATATTTTGT-ATGGCATGCACAAAAAAATTCAGCTAAAAACTC
**
14536670 AAAGTGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
256 AAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
14536735 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
321 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAG
* *
14536800 GAATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACATCCCCC
386 GAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAGCCCCC
* **
14536865 GGCCCCACCAATCGCCGGAACCATCAATGCCA-CAGGTTAGGCTCTCCGGTGATGCTTCGACAAT
451 GGCCCCACCAATCGCCGGAACCACCAATGCCATC-GGTTAGGCTCTCCGACGATGCTTCGACAAT
* * *
14536929 GGTGCCCCAAGCAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTCGCCC
515 GGTGCCCCAAGCAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCAACATCGCCC
* *
14536994 AAACTTTTAGAATAGGAATGAAC-TCTGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGC
580 AAAATATTAGAATAGGAATGAACTTC-GTATGCTTAGACATGGAATGAACTCCATATGCCTAAGC
** * * *
14537058 CAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGAGGCAGAATGCG
644 CAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCG
14537111 CAAGCCGGGG
Statistics
Matches: 630, Mismatches: 61, Indels: 12
0.90 0.09 0.02
Matches are distributed among these distances:
701 3 0.00
702 145 0.23
703 8 0.01
704 474 0.75
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (702 bp):
GTGGGTTCAAACACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTAAATTCAT
ACAATGGTCCCCTAAGCCTTCATATGAAGTTTCGTGGCAAGACAACCCGTTTTATTTTTTTCACG
ATTTTCGAAACCTTTCACAATTCGAGATTTTTTAAATTTTTTTAGAAAGAGTTTTGACCCCAAAT
TCGGTAGAGGTGATCCTTATATTTTGTATGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
GGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGAATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAGCCCCCGGCCC
CACCAATCGCCGGAACCACCAATGCCATCGGTTAGGCTCTCCGACGATGCTTCGACAATGGTGCC
CCAAGCAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCAACATCGCCCAAAATA
TTAGAATAGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
CAAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCGTAAACC
Found at i:14537601 original size:318 final size:318
Alignment explanation
Indices: 14537024--14537621 Score: 770
Period size: 318 Copynumber: 1.9 Consensus size: 318
14537014 AACTCTGTAT
* * * *
14537024 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACGCCATATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAG
* * * ** * * * *
14537089 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTGGGTCCCCCTCTATGTGCTGTCGATC
66 CCGACCAGAGAGACAGAATACGCAAGCCGGGGATCAGCACGATCCCCCCCAATGTGCTATCGATC
* * * * *
14537154 CTGCTGCTGCAACCCTCGGTCTGGTCCACCCTTAGACTGGGAATGAACTCCATATGCATAAGTTA
131 CTGCTACCGCAACCCTCGGTCTGATCCACCCTTAGACTAGGAATGAACTCCATATGCATAAGTCA
* * *
14537219 ACCCACGAAACGAGCGTGCGGGCATTGAGCCAACCAAAGAGGCGTAATGCGCAAGCCAGGGATCG
196 ACCCACGAAACGAGCGTGCGGGCACTGAGCCAACCAAAGAGGCATAATGCACAAGCCAGGGATCG
* *
14537284 GCCCGATCCCCTTCGGCGTGTCGCCAGTCCTACTAGCACAGCCCTCAATCTAGCTGGG
261 ACCCGATCCCCCTCGGCGTGTCGCCAGTCCTACTAGCACAGCCCTCAATCTAGCTGGG
* * *
14537342 GCTTAGACATGGAATTAACGCCCTATGCCTAAGCCAACCCATGAAAAGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACGCCATATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAG
* * * * *
14537407 TCGATCGGAGAGATAGAATACGCAAGTCGGGGATC-GACACGATCCCCCCCAATGTGCTATCGAT
66 CCGACCAGAGAGACAGAATACGCAAGCCGGGGATCAG-CACGATCCCCCCCAATGTGCTATCGAT
* * * *
14537471 CCTGCTACCGCAACTCTCGGTCTGATCTGA-TCTTAGACTAGGAATGAACTCCGTATGCATAAGT
130 CCTGCTACCGCAACCCTCGGTCTGATC-CACCCTTAGACTAGGAATGAACTCCATATGCATAAGT
* * ** * *
14537535 CAACCCATGAAATGAGCGTGCGGGTGCTGAGCCGA-CAGAAGAGGCATAATGCACAAGTCAGGGA
194 CAACCCACGAAACGAGCGTGCGGGCACTGAGCCAACCA-AAGAGGCATAATGCACAAGCCAGGGA
*
14537599 TCGACCCGATCCCCCTCTGCGTG
258 TCGACCCGATCCCCCTCGGCGTG
14537622 CTACCAATCC
Statistics
Matches: 235, Mismatches: 42, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
317 3 0.01
318 231 0.98
319 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACGCCATATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAG
CCGACCAGAGAGACAGAATACGCAAGCCGGGGATCAGCACGATCCCCCCCAATGTGCTATCGATC
CTGCTACCGCAACCCTCGGTCTGATCCACCCTTAGACTAGGAATGAACTCCATATGCATAAGTCA
ACCCACGAAACGAGCGTGCGGGCACTGAGCCAACCAAAGAGGCATAATGCACAAGCCAGGGATCG
ACCCGATCCCCCTCGGCGTGTCGCCAGTCCTACTAGCACAGCCCTCAATCTAGCTGGG
Found at i:14537632 original size:159 final size:160
Alignment explanation
Indices: 14537025--14537637 Score: 465
Period size: 159 Copynumber: 3.9 Consensus size: 160
14537015 ACTCTGTATG
* *
14537025 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * ** * * ** *
14537090 CGGCCAG-AGAGGCAGAATGCGCAAGCCGGGGATC-AGCTGGGTCCCCCTCTATGTGCTGTCGAT
66 CGACCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCCTCTACGTGCTACCAAT
* * * * *
14537153 CCTGCTGCTGCAACCCTCGGTCTGGTC-CACC
130 CCTACTACCGCAACCCTCGGTCTGATCTGA-C
** * **
14537184 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * ** *
14537248 CCAACCA-AAGAGGC-GTAATGCGCAAGCCAGGGATCGGCCCGATCCCCTTCGGCGTG-TCGCCA
65 CCGACCAGAAGAGGCAG-AATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCT-ACCA
* * * * ** * **
14537310 GTCCTACTAGCACAGCCCTCAATCT-AGCTGGGG
128 ATCCTACTACCGCAACCCTCGGTCTGATCT-GAC
* * * * * * * * *
14537343 CTTAGACATGGAATTAACGCCCTATGCCTAAGCCAACCCATGAAAAGGGCATGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * ** * * * * * * * * *
14537408 CGATC-GGAGAGATAGAATACGCAAGTCGGGGATCGACACGATCCCCCCCAATGTGCTATCGATC
66 CGACCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCAATC
* * *
14537472 CTGCTACCGCAACTCTCGGTCTGATCTGAT
131 CTACTACCGCAACCCTCGGTCTGATCTGAC
* * * *
14537502 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * *
14537566 CCGA-CAGAAGAGGCATAATGCACAAGTCAGGGATCGACCCGATCCCCCTCTGCGTGCTACCAAT
65 CCGACCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCAAT
14537630 CCTACTAC
130 CCTACTAC
14537638 TGGTCTTGCT
Statistics
Matches: 337, Mismatches: 103, Indels: 28
0.72 0.22 0.06
Matches are distributed among these distances:
158 6 0.02
159 325 0.96
160 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
CGACCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCAATC
CTACTACCGCAACCCTCGGTCTGATCTGAC
Found at i:14537871 original size:25 final size:26
Alignment explanation
Indices: 14537843--14537891 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14537833 CCGGTCTGAT
14537843 CTTAGAC-TAAAATGAACTCTGTACG
1 CTTAGACATAAAATGAACTCTGTACG
* *
14537868 CTTAGACATAGAATGAGCTCTGTA
1 CTTAGACATAAAATGAACTCTGTA
14537892 TGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (26 bp):
CTTAGACATAAAATGAACTCTGTACG
Found at i:14538374 original size:26 final size:26
Alignment explanation
Indices: 14538345--14538394 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14538335 GGTTTGATCC
14538345 TAGACTAGGAATGAACTCTGTATGCT
1 TAGACTAGGAATGAACTCTGTATGCT
* *
14538371 TAGACTGGGGATGAACTCTGTATG
1 TAGACTAGGAATGAACTCTGTATG
14538395 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCTGTATGCT
Found at i:14539120 original size:26 final size:26
Alignment explanation
Indices: 14539080--14539132 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14539070 TGGCTCAAAT
*
14539080 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACACCGTATG
*
14539106 CTTAGACATGG-AATGAACACTGTATG
1 CTTAGAC-TGGAAATGAACACCGTATG
14539132 C
1 C
14539133 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCGTATG
Found at i:14539516 original size:26 final size:26
Alignment explanation
Indices: 14539480--14539534 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
14539470 GGCGTGTGGG
*
14539480 TGCTCAGACTGG-GAATGAACTCCGTA
1 TGCTCAGACTGGAG-ATAAACTCCGTA
* *
14539506 TGCTTAGACTGGAGATAAACTTCGTA
1 TGCTCAGACTGGAGATAAACTCCGTA
14539532 TGC
1 TGC
14539535 CTAAGTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TGCTCAGACTGGAGATAAACTCCGTA
Found at i:14539879 original size:26 final size:26
Alignment explanation
Indices: 14539850--14539902 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14539840 CTGGTCCGAT
*
14539850 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14539876 CTTAGACTGGGGATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14539902 C
1 C
14539903 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14540076 original size:26 final size:26
Alignment explanation
Indices: 14540047--14540099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14540037 CTGGTCCGAT
*
14540047 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
14540073 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
14540099 C
1 C
14540100 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:14540174 original size:197 final size:197
Alignment explanation
Indices: 14539830--14540208 Score: 449
Period size: 197 Copynumber: 1.9 Consensus size: 197
14539820 CTACTACTGC
* * * * **
14539830 AACCATCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGGACT
1 AACCATCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACT
* * * ** * * *
14539895 CTGTATGCCTAAGTCAACCCAAGAAATGAGTGTATGGGTGCTCAGCCGACCGAAGAGGCACAATG
66 CCGTATGCCTAAGCCAACCCAAGAAACGAGCATACGGGCGCTCAGCCGACCGAAGAGGCACAATA
* * ***
14539960 TGCAACTCGAGGATCGACC-GGATCCCCCCCTTTGTGCTGCCGATCCTGCTGCTGGTTCTACTAT
131 CGAAACTCGAGGATCGACCTGG-TCCCCCCCTACATGCTGCCGATCCTGCTGCTGGTTCTACTAT
14540024 CGT
195 CGT
*
14540027 AACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATAAAC
1 AACCATCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGAATAAAC
* * * * * *
14540091 TCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCTGGA-TGGAGAGGCAGAA
65 TCCGTATGCCTAAGCCAACCCAAGAAACGAGCATACGGGCGCTCAGC-CGACCGAAGAGGCACAA
* * *
14540155 TACGAAAGTCGAGGATCGACCTGGTCCTCCCCTACATGCTGTCGATCCTGCTGC
129 TACGAAACTCGAGGATCGACCTGGTCCCCCCCTACATGCTGCCGATCCTGCTGC
14540209 CTCAACCCTT
Statistics
Matches: 150, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
197 145 0.97
198 5 0.03
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (197 bp):
AACCATCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACT
CCGTATGCCTAAGCCAACCCAAGAAACGAGCATACGGGCGCTCAGCCGACCGAAGAGGCACAATA
CGAAACTCGAGGATCGACCTGGTCCCCCCCTACATGCTGCCGATCCTGCTGCTGGTTCTACTATC
GT
Found at i:14540494 original size:159 final size:157
Alignment explanation
Indices: 14540072--14540519 Score: 406
Period size: 159 Copynumber: 2.8 Consensus size: 157
14540062 AACTCCGTAT
* *
14540072 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * * *
14540137 CTGGATGGAGAGGCAGAATACGAAAGTCGAGGATCGACCTGGTCCTCCCCTACATGCTGTCGATC
66 CTGG-TCGAGAGGCAGAATGCGAAAGTCGGGGATCGACCCGATCC-CTCCTGCGTGCTGTCGATC
* * * *
14540202 CTGCTGCCTCAACCCTTGGTCTGGTCTGA
129 CCGCTACCACAACCCTAGGTCTGGTCTGA
* * * * * ** * * *
14540231 TCTTAGA-TTGGGTATGAACTTCGTATGCCTAAGTCAACCCACGAATTGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * *
14540295 GCCGATCGAAGAGGCATAATGC-ATAAGCCAGGGA-CTGACCCGATCCCTCTCTGCGTGCTGTTG
65 GCTGGTCG-AGAGGCAGAATGCGA-AAGTCGGGGATC-GACCCGATCCCTC-CTGCGTGCTGTCG
* * *
14540358 ATCCCGTTACCACAACCCTCAGTTC-GGT-TGGG
126 ATCCCGCTACCACAACCCT-AGGTCTGGTCT-GA
* * *
14540390 GCTTAGACGTGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
*
14540455 CTGGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCC-AGTCCC-CCATGCGTGCTGTCGAT
66 CTGGTC-GAGAGGCAGAATGCGAAAGTCGGGGATCGACCCGA-TCCCTCC-TGCGTGCTGTCGAT
14540518 CC
128 CC
14540520 TGCTGCCGTA
Statistics
Matches: 224, Mismatches: 52, Indels: 27
0.74 0.17 0.09
Matches are distributed among these distances:
157 1 0.00
158 25 0.11
159 192 0.86
160 6 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CTGGTCGAGAGGCAGAATGCGAAAGTCGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCCC
GCTACCACAACCCTAGGTCTGGTCTGA
Found at i:14541633 original size:159 final size:158
Alignment explanation
Indices: 14541270--14541698 Score: 427
Period size: 159 Copynumber: 2.7 Consensus size: 158
14541260 GGCTCAAAAT
* * * * *
14541270 CTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAACCCACGAAACGAGTGTGTGGGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * *
14541334 CAGGCCAGAGAGGCAAAATCCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
66 CA-GCCAAAGAGGCAAAATCCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGATACCGATCC
** * * * *
14541399 TGGTGCCGCAACCCTCGGTTCGGTCTGAT
130 CAGTGCCACAACACTCGGTCCGGTCTGAG
* * * *
14541428 CTCAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
14541493 CAGCCAAAGAGGCATAATCCGTAAGCCGGGGATC-AGCTCGGTCCCCCTCTGTGTGATGCCGGTC
66 CAGCCAAAGAGGCAAAATCCGCAAGCCGGGGATCGA-CCCGGTCCCCC-CTGCGTGATACCGATC
* *
14541557 CCATTGCCACAACACTCGGTCCGG-CTAGGG
129 CCAGTGCCACAACACTCGGTCCGGTCT-GAG
* * *
14541587 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * * * * *
14541651 CCAGTCGGAA-AGGTAGAATGCGCAAGCCGAGGATAGACCCAGTCCCCC
65 CCAG-CCAAAGAGGCAAAATCCGCAAGCCGGGGATCGACCCGGTCCCCC
14541699 TTATGTGCTG
Statistics
Matches: 221, Mismatches: 43, Indels: 13
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 96 0.43
159 119 0.54
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CAGCCAAAGAGGCAAAATCCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGATACCGATCCC
AGTGCCACAACACTCGGTCCGGTCTGAG
Found at i:14541787 original size:26 final size:26
Alignment explanation
Indices: 14541747--14541797 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14541737 GATCCGATCC
14541747 TAGACTGGGACTGAACT-TCGTATGCT
1 TAGACTGGGACTGAACTCT-GTATGCT
14541773 TAGACTGGGGA-TGAACTCTGTATGC
1 TAGACT-GGGACTGAACTCTGTATGC
14541798 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGACTGAACTCTGTATGCT
Found at i:14542060 original size:343 final size:350
Alignment explanation
Indices: 14541431--14542350 Score: 987
Period size: 343 Copynumber: 2.6 Consensus size: 350
14541421 GTCTGATCTC
* * *
14541431 AGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAG
1 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAG
** * * * * * ***
14541496 CCAAAGAGGCATAATCCGTAAGCCGGGGATCAGCTCGGTCCCCCTCTGTGTGATGCCGGTCCCAT
66 CCTGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * *
14541561 TGCCACAACACTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
131 TGCCACAACCCTCGGTTCGG-TTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* ** * * *
14541626 ACGAAATGGGCGTGCGGGTGCTC-AGCCAGTCGGAAAGGTAGAATGCGCAAGCCGAGGATAGACC
195 ACGAAATGAGCGTGCGGGCACTCAACCCAGTCGGAAAGGCAGAATGCGCAAGCCGACGATAGACC
* *
14541690 CAGTCCCCCTTATGTGCTGTCGAT-C-CTGC-TG-CC-G-C-AACCCTCGATCC-GATCCGATCC
260 CAGTCCCCCTCATGTGCTGTAGATCCGCTGCTTGCCCTGTCGAACCCTCGATCCAGA-CCGATCC
*
14541747 TAGACTGGGACTGAACTTC-GTATGCTT
324 TAGACTGGGAATGAA-TTCTGTATGCTT
* * * *
14541774 AGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGTGCTCAGCCAG
1 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAG
* * * *
14541839 CCTGAGAGGCATAATGTGTGAGCCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGATCCTGC
66 CCTGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCTGC
*
14541904 TGCCACAACCCTCAGTTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
131 TGCCACAACCCTCGGTTCGGTT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* *
14541969 ACGAAATGAGCGTGCGGGCACTCAACCCA-TC-GAAGAGGCAGAATGCGCAAGCCGACGATTGGC
195 ACGAAATGAGCGTGCGGGCACTCAACCCAGTCGGAA-AGGCAGAATGCGCAAGCCGACGATAGAC
* * *
14542032 CCGGTCCCTCC-CGTGTGCTGTAGATCCTGCTGCTTGTCCTCCTGTCGTAACCCTCGGTCCAGAC
259 CCAGTCCC-CCTCATGTGCTGTAGATCC-GCTGCTTG--C-CCTGTCG-AACCCTCGATCCAGAC
*
14542096 CGATCTTAGACTGGGAATGAATTCTGTATGCTT
318 CGATCCTAGACTGGGAATGAATTCTGTATGCTT
* * * * * *
14542129 AGACAT-GGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG-CT
1 AGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCA
* * * * * * * *
14542192 GACTGGAGAGGTAGAATGCGCAAGCTGGGGATC-GTCCCAGTCCCCCTTTGCGTGCTGTCGATCC
65 GCCT-GAGAGGCATAATGCGTAAGCCGGGGATCAG-CCCGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * *
14542256 TGCTG-CAGCAACCCT-GGGTCTGGTCTGATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGT
128 TGCTGCCA-CAACCCTCGGTTC-GGT-TGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
* *
14542318 CAACCCATGAAATGAGCGTGCGGGCACTGAACC
189 CAACCCACGAAATGAGCGTGCGGGCACTCAACC
14542351 GGCCGAAAAG
Statistics
Matches: 481, Mismatches: 71, Indels: 38
0.82 0.12 0.06
Matches are distributed among these distances:
342 4 0.01
343 232 0.48
344 7 0.01
346 4 0.01
347 2 0.00
351 2 0.00
352 1 0.00
353 1 0.00
354 14 0.03
355 210 0.44
356 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (350 bp):
AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAG
CCTGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TGCCACAACCCTCGGTTCGGTTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAATGAGCGTGCGGGCACTCAACCCAGTCGGAAAGGCAGAATGCGCAAGCCGACGATAGACCC
AGTCCCCCTCATGTGCTGTAGATCCGCTGCTTGCCCTGTCGAACCCTCGATCCAGACCGATCCTA
GACTGGGAATGAATTCTGTATGCTT
Found at i:14542138 original size:26 final size:26
Alignment explanation
Indices: 14542100--14542152 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14542090 CCAGACCGAT
14542100 CTTAGACTGGGAATGAA-TTCTGTATG
1 CTTAGACTGGGAATGAACTT-TGTATG
14542126 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTTTGTATG
14542152 C
1 C
14542153 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATG
Found at i:14542803 original size:27 final size:26
Alignment explanation
Indices: 14542773--14542829 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
14542763 AGATGACCCG
** *
14542773 TTTTCTCTTTTTCACGATTTTTGAAAC
1 TTTTCTCGATTTCA-GATTTTTGAAAA
* *
14542800 TTTTTTCGATTTCAGATTTTTTAAAA
1 TTTTCTCGATTTCAGATTTTTGAAAA
14542826 TTTT
1 TTTT
14542830 TTTAGAAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.21, C:0.12, G:0.07, T:0.60
Consensus pattern (26 bp):
TTTTCTCGATTTCAGATTTTTGAAAA
Found at i:14543282 original size:26 final size:26
Alignment explanation
Indices: 14543243--14543295 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14543233 GGCTCAAACT
14543243 CTTAGACTGAGAATAAACTCCATATG
1 CTTAGACTGAGAATAAACTCCATATG
* *
14543269 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATAAACTCCATATG
14543295 C
1 C
14543296 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCATATG
Found at i:14543591 original size:159 final size:159
Alignment explanation
Indices: 14543268--14543613 Score: 446
Period size: 159 Copynumber: 2.2 Consensus size: 159
14543258 AACTCCATAT
*
14543268 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
14543333 CCGGTCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCACCTCTGTGTGCTACCAGTC
66 CCGGCCAGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCACCCCTGCGTGCTACCAGTC
* *
14543398 CCACTGCCACAACCCTTAATCCAGCTAGG
131 CCACTGCCACAACCCTTAATCCAACTAGA
* * *
14543427 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** *
14543492 CCGGCCAGAGAGGCAGAATGTGTAAGCTGGGGATCGGCTTGGTCCCCCCCTGCGTGCTATCCA-T
66 CCGGCCAGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCACCCCTGCGTGCTA-CCAGT
** ** * *
14543556 CCTGCTGCTGCAACCCTTGATCCAATTCA-A
130 CCCACTGCCACAACCCTTAATCCAACT-AGA
*
14543586 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14543614 TTAGATTGAG
Statistics
Matches: 161, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
158 1 0.01
159 156 0.97
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCAGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCACCCCTGCGTGCTACCAGTC
CCACTGCCACAACCCTTAATCCAACTAGA
Found at i:14543835 original size:26 final size:26
Alignment explanation
Indices: 14543797--14543849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14543787 CTGATCTGAT
14543797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14543823 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14543849 C
1 C
14543850 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14544323 original size:26 final size:26
Alignment explanation
Indices: 14544294--14544343 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14544284 ATCCAATCTT
14544294 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
*
14544320 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14544344 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:14546231 original size:26 final size:26
Alignment explanation
Indices: 14546179--14546231 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14546169 CTGGTTTGAT
*
14546179 CTTAGACTGGGAATGAACTTTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
* * *
14546205 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
14546231 C
1 C
14546232 CTAAGTTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:14546413 original size:26 final size:26
Alignment explanation
Indices: 14546375--14546427 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14546365 CCGGTCCAAT
*
14546375 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14546401 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14546427 C
1 C
14546428 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14546906 original size:26 final size:26
Alignment explanation
Indices: 14546877--14546929 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14546867 CCGGTCTGAT
14546877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14546903 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14546929 C
1 C
14546930 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14547284 original size:26 final size:26
Alignment explanation
Indices: 14547233--14547285 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14547223 CTGGTCTGAT
** * *
14547233 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACACGGAATGAACTCCATATG
14547259 CTTAGACACGGAATGAACTCCATATG
1 CTTAGACACGGAATGAACTCCATATG
14547285 C
1 C
14547286 CTAAGCCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCATATG
Found at i:14547385 original size:356 final size:355
Alignment explanation
Indices: 14546724--14547387 Score: 866
Period size: 356 Copynumber: 1.9 Consensus size: 355
14546714 TGGGGCTTAC
* * *
14546724 ACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGCGCTCAGCCGACC
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACC
* * * * *
14546789 AGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCTTGCATGCTACCGAAACTGCTGC
66 AGAGAGGCAGAATGCACAAGCCAGGGATCGACTCGATCCCCCTTACATGCTACCGAAACTGCTAC
* ** *
14546854 CGCAACCATTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
131 CGCAACCATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGA
** * * * * *
14546919 ACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCATGTGCTCAACCGATCGGAGAGGCATA
196 ACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGA
* *
14546984 ATGCACAAGCCGGGGATCAGCCCGGTCACCCTCTGCGTACTGTCGATCTCGCTGTCGGTCCTGCT
261 ATGCACAAGCCGGGGATCAGCCCAGTCACCCTCTGCATACTGTCGATCTCGCTGTCGGTCCTGCT
14547049 GCCATAACCTTCGGTCCGGTTGGGAAGTAA
326 GCCATAACCTTCGGTCCGGTTGGGAAGTAA
* *
14547079 ACATGGAATGAAC-CCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCTCTTAGCC-AG
1 ACATGGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGA-
* * ** * * ** **
14547142 CCGGAGGGGCAGAATGCACAAGCCAGGGATCGGTTCGGTCCCCCTCTACGTGCTGTCGATCCTGC
64 CCAGAGAGGCAGAATGCACAAGCCAGGGATCGACTCGATCCCCCT-TACATGCTACCGAAACTGC
* * *
14547207 TACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACACGGAA
128 TACCGCAACCATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAA
* * *
14547272 TGAACTCCATATGCCTAAGCCAATCCATGAAATGAGCGTGCAGGCGTTCAACCGATTGGAGAGGC
193 TGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAACCGATCGGAGAGGC
** * * * *
14547337 AGAATGCGTAAGTCGGGGATCGGCCTAGTC-CCCTCCTGCATGCTGTCGATC
258 AGAATGCACAAGCCGGGGATCAGCCCAGTCACCCT-CTGCATACTGTCGATC
14547388 CTACTATCGC
Statistics
Matches: 260, Mismatches: 45, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
354 3 0.01
355 94 0.36
356 163 0.63
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (355 bp):
ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACC
AGAGAGGCAGAATGCACAAGCCAGGGATCGACTCGATCCCCCTTACATGCTACCGAAACTGCTAC
CGCAACCATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGA
ACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGA
ATGCACAAGCCGGGGATCAGCCCAGTCACCCTCTGCATACTGTCGATCTCGCTGTCGGTCCTGCT
GCCATAACCTTCGGTCCGGTTGGGAAGTAA
Found at i:14547401 original size:185 final size:185
Alignment explanation
Indices: 14547083--14547444 Score: 444
Period size: 185 Copynumber: 2.0 Consensus size: 185
14547073 AAGTAAACAT
* * *
14547083 GGAATGAACCCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCTCTTAGCCAGCCGGAG
1 GGAATGAACCCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCTCTCAACCAGCCGGAG
* * * * *
14547148 GGGCAGAATGCACAAGCCAGGGATCGGTTCGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGC
66 AGGCAGAATGCACAAGCCAGGGATCGGCTCAGTCCCCCTCTACATGCTGTCGATCCTACTACCGC
* * * *
14547213 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAC
131 AACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAC
* * * **
14547268 GGAATGAACTCCATATGCCTAAGCCAATCCATGAAATGAGCGTGCAGGCGT-TCAACC-GATTGG
1 GGAATGAACCCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGC-TCTCAACCAG-CCGG
** * * *
14547331 AGAGGCAGAATGCGTAAGTCGGGGATCGGC-CTAGT-CCCCTCCTGCATGCTGTCGATCCTACTA
64 AGAGGCAGAATGCACAAGCCAGGGATCGGCTC-AGTCCCCCT-CTACATGCTGTCGATCCTACTA
* *
14547394 TCGCAACCCTCAGTCCGATCTGATCTTAGGCTGGGAATGAACTCCGTATGC
127 CCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
14547445 CTAAGTCAAC
Statistics
Matches: 149, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
184 7 0.05
185 141 0.95
186 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
GGAATGAACCCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCTCTCAACCAGCCGGAG
AGGCAGAATGCACAAGCCAGGGATCGGCTCAGTCCCCCTCTACATGCTGTCGATCCTACTACCGC
AACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAC
Found at i:14547614 original size:158 final size:157
Alignment explanation
Indices: 14547259--14547833 Score: 408
Period size: 158 Copynumber: 3.6 Consensus size: 157
14547249 ACTTCGTATG
* * * * * * ** *
14547259 CTTAGACACGGAATGAACTCCATATGCCTAAGCCAATCCATGAAATGAGCGTGCAGGCGTTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* ** * * * * * * * * *
14547324 CGATTGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTAGTCCCCTCCTGCATGCTGTCGATCC
65 CAACCGAAGAGGCAGATTGCGCAAGCCAGGGATCGGCCCAAT-CCCTCCTACGTGCTGTCGATCC
* ** * ** *
14547389 TACTATCGCAACCCTC-AGTCC-GATCTGAT
129 CACTGCCACAACCCTCGA-TCCAG-TCCAAC
* * *
14547418 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * ** * *
14547483 CAACCGGAGAGGCATATTGCGCAAGCCAGGGATCGGCCCAATCCC-CTCTGTGTGTTGTCGGTCC
65 CAACCGAAGAGGCAGATTGCGCAAGCCAGGGATCGGCCCAATCCCTC-CTACGTGCTGTCGATCC
* * ***
14547547 CGCTGCCACAACCCTCGATCC-GGCTGGGC
129 CACTGCCACAACCCTCGATCCAGTC-CAAC
* * ** * *
14547576 CTTAGACATTGAATGAACTCCCTATGCCTAAGGT-AACCCACAAAACGGGTGTGCGGGCACTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAA-GTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
14547640 TCGATCGAAGAGGTAGATTGCGCAAGCTAGGGATCGGCCCGATCCCTCCTACGTGCTGTCGATCC
64 CCAACCGAAGAGGCAGATTGCGCAAGCCAGGGATCGGCCCAATCCCTCCTACGTGCTGTCGATCC
* * * * *
14547705 TACTGCCGCAACCCTCGGTCTAGTCCAAT
129 CACTGCCACAACCCTCGATCCAGTCCAAC
* * **
14547734 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAAT
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* *
14547799 CGACC-AGAGAGGCAGGA-TGCGCAAGCCAAGGATCG
65 CAACCGA-AGAGGCA-GATTGCGCAAGCCAGGGATCG
14547834 AACAGATGGT
Statistics
Matches: 327, Mismatches: 77, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
157 7 0.02
158 225 0.69
159 95 0.29
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
AACCGAAGAGGCAGATTGCGCAAGCCAGGGATCGGCCCAATCCCTCCTACGTGCTGTCGATCCCA
CTGCCACAACCCTCGATCCAGTCCAAC
Found at i:14548414 original size:26 final size:26
Alignment explanation
Indices: 14548376--14548426 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14548366 GGCTCAAAAT
*
14548376 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14548402 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
14548427 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14548830 original size:159 final size:157
Alignment explanation
Indices: 14548401--14548853 Score: 412
Period size: 158 Copynumber: 2.9 Consensus size: 157
14548391 AACTTCGTAT
*
14548401 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAG
* * *
14548466 CCGGCCGGAGAGGCAGAATGCACAAGTCAGGGATCGGCTCTG-TCCCCC-CTGCGTGCTGTCGAT
66 CCGGCC-GAGAGGCAGAATGCGCAAG-CAGGGATCGAC-CCGATCCCCCTCTGCGTGCTGTCGAT
* ** * * * * *
14548529 CCTGCTGTCGCAACCTTTGGTCTGGTCCAA
128 CCCGCTACCACAACCCTCGGTCTCGACCAA
* * * ** * * * * ** *
14548559 TCCTAGAC-TGGGAATGAACTCCGTATGCATAAGTTAAACCATGAAACAAGTGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCA
* * * * * * * *
14548623 GCCAGTCGAAAAGGCATAACGCGCAAGTAGGGCATCGACCCGATCCCCCTCTGTGTGCTGTCGGT
65 GCCGGCCG-AGAGGCAGAATGCGCAAGCAGGG-ATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
* *
14548688 CCCGCTACCACAACCCTCGGTC-CGACTAGG
128 CCCGCTACCACAACCCTCGGTCTCGACCA-A
* * *
14548718 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAG
* * * **
14548783 CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGATCGACCCGATCCCCC-CTACGTGCTACCGATCC
66 CCGGCC-GAGAGGCAGAATGCGCAAGCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCC
*
14548847 TGCTACC
130 CGCTACC
14548854 GTAACCCTTG
Statistics
Matches: 224, Mismatches: 63, Indels: 17
0.74 0.21 0.06
Matches are distributed among these distances:
157 26 0.12
158 98 0.44
159 98 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAG
CCGGCCGAGAGGCAGAATGCGCAAGCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCC
GCTACCACAACCCTCGGTCTCGACCAA
Found at i:14548917 original size:26 final size:26
Alignment explanation
Indices: 14548878--14548928 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14548868 GGTTTGATCC
14548878 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
14548904 TAGACTAGGG-ATGAACTCTGTATGC
1 TAGACT-GGGAATGAACTCCGTATGC
14548929 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14549275 original size:26 final size:26
Alignment explanation
Indices: 14549245--14549296 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14549235 CGATCCGATA
14549245 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACTTGGG-ATGAACTCCATATGC
*
14549271 TTAGACTTGGGATGAACTCCGTATGC
1 TTAGACTTGGGATGAACTCCATATGC
14549297 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTTGGGATGAACTCCATATGC
Found at i:14549376 original size:368 final size:367
Alignment explanation
Indices: 14548699--14549584 Score: 1008
Period size: 368 Copynumber: 2.4 Consensus size: 367
14548689 CCGCTACCAC
* * * * *
14548699 AACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTTCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * ** *
14548764 CGGGCGTGCAGGCACTCAGCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGATCGACCCGATCCCC
66 CGAGCGTACAGGCACTCAGCCGAACAGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCC
* * * * ** *
14548829 CCTACGTGCTACCGATCCTGCTACCGTAACCCTTGATCTGGTTTGATCCTAGACTGGGAATGAAC
131 CCTACGTGCTACCGATCCTACTACCGCAACCCTTGATCCGATCCGATACTAGACTGGGAATGAAC
* * * *
14548894 TCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACTTATGAAATGAGCGTATGGG
196 TCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACTTATGAAACGAGCGTACGGG
* * * * ** *
14548959 TGCTCAGACGGCCGGAGAGGCCGATCGGAGAGGCATAATGCGTAAGCCGGGGATTAGCCCG-GTC
261 TGCTCAGACGGCCGAAAAGGCCGACCGGAGAGGCATAATACACAAGCCGGGGATCAGCCCGAGTC
*
14549023 CCTCTCTGCGTGCTG-CTGATCTCGCTACCAGTCCTGCTGCCAT
326 CC-CTCTGCGTCCTGTC-GATCTCGCTACCAGTCCTGCTGCCAT
*** *
14549066 AACCCTCGG-TCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 AACCCTCGGTTC-AACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* ** ** * * * *
14549130 ATGAGCGTATGGGTGCTCAGCCGAAACGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTC
65 ACGAGCGTACAGGCACTCAGCCG-AACAGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGATC
* ** * * * * * *
14549195 CCCCCTGCGTG-TGTCGATCCTATTGCTGCAACCTTTGGTCCGATCCGATATTAGACTGGGAATG
128 CCCCCTACGTGCTACCGATCCTACTACCGCAACCCTTGATCCGATCCGATACTAGACTGGGAATG
*
14549259 AACTCCATATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACTTATGAAACGAGCGTAC
193 AACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACTTATGAAACGAGCGTAC
* * * * *
14549324 GGGTGCTCAGCCGGTCGAAAAGGCTGACCGGAGAGGCATAATATACAAGCCGGGGATCAGCCTGA
258 GGGTGCTCAGACGGCCGAAAAGGCCGACCGGAGAGGCATAATACACAAGCCGGGGATCAGCCCGA
* ** *
14549389 TTCCCCTCTGCGTCCTGTCGATCTCGCTGTCGGTCCTGCTGCCAT
323 GTCCCCTCTGCGTCCTGTCGATCTCGCTACCAGTCCTGCTGCCAT
*
14549434 AACCCTCGGTTCAACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTTCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * * * * * *
14549499 CGAGCGTGC-GGTCACTCAACCGACCGGAGAGGCAAAATGCGAAAGCCGGGGATCGATCGGGTCC
66 CGAGCGTACAGG-CACTCAGCCGAACAGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCC
* *
14549563 CACCCTGCATGCTACCGATCCT
129 C-CCCTACGTGCTACCGATCCT
14549585 GCTGCTGGTC
Statistics
Matches: 429, Mismatches: 80, Indels: 18
0.81 0.15 0.03
Matches are distributed among these distances:
366 1 0.00
367 107 0.25
368 284 0.66
369 37 0.09
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (367 bp):
AACCCTCGGTTCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
CGAGCGTACAGGCACTCAGCCGAACAGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCC
CCTACGTGCTACCGATCCTACTACCGCAACCCTTGATCCGATCCGATACTAGACTGGGAATGAAC
TCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACTTATGAAACGAGCGTACGGG
TGCTCAGACGGCCGAAAAGGCCGACCGGAGAGGCATAATACACAAGCCGGGGATCAGCCCGAGTC
CCCTCTGCGTCCTGTCGATCTCGCTACCAGTCCTGCTGCCAT
Found at i:14549983 original size:26 final size:26
Alignment explanation
Indices: 14549954--14550006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14549944 CCGGTCTGAT
* *
14549954 CTTAGACTTGGAATGAACTCGGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14549980 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14550006 C
1 C
14550007 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14550314 original size:512 final size:501
Alignment explanation
Indices: 14549616--14550536 Score: 1195
Period size: 512 Copynumber: 1.8 Consensus size: 501
14549606 ACCGTCGGTC
* *
14549616 TGATCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAATGAACGTGCG
1 TGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAACGAACGTGCG
* * *
14549681 AACTCTGAGCCGACCGGAGAGGCATAATCCGCAAGCCAGGGATCGGCCCGATCACCCTCTACATG
66 AACGCTGAGCCGACCGGAGACGCATAATCCGCAAGCCAGGGATCAGCCCGATCACCCTCTACATG
* * *
14549746 CTACCGGTCCCACTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCCATG
131 CTACCGGTCCCACTACCACAACCCTCGATCAGGCTAGGGCTTAGACATGGAATGAACTCCCCATG
** * * *
14549811 CCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGCTGGCC-GAGAGGTAGAATGCGTAAGT
196 CCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGTAAGC
* * * * * * *
14549875 CGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGTTGGTCCTATTGCCGTAACCCT
261 CAGCGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTAC---T-G------T-CC-T-ACCCT
* *
14549940 CGATCCGGTCTGATCTTAGACTTGGAATGAACTCGGTATGCTTAGACAT-GGAATGAACTCCGTA
313 CGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTA
14550004 TGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTTAGCTGGCCGAAGAGGCAGAATGCACAA
377 TGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTTAGCTGGCCGAAGAGGCAGAATGCACAA
14550069 GACAAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCTTACTACCGTAACCCTCGTTT
442 GACAAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCTTACTACCGTAACCCTCGTTT
* * *
14550129 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCG
1 TGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAACGAACGTGCG
** * ** * * * * *
14550193 GGCGCTGAGCC-AGTCGGAGACGCATAATGTGCAAG-CTGATGATCAGCCCGATCCCCCTTTACG
66 AACGCTGAGCCGA-CCGGAGACGCATAATCCGCAAGCCAG-GGATCAGCCCGATCACCCTCTACA
** * * * *
14550256 TGCTGTCGGTCCCGCTACCACAACCCTCGATCAGGCTGGGGCTTAGACATGTAATGAACTCCCTA
129 TGCTACCGGTCCCACTACCACAACCCTCGATCAGGCTAGGGCTTAGACATGGAATGAACTCCCCA
* *
14550321 TGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTTGGCCGGAGAGGCAGAATGCGTAA
194 TGCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGTAA
* * * *
14550386 GCCAGCGATCGACCCGGTCCCCCTTGCGTGCTGCCGATCCTACTGTCCTACCCTCGGTCTGGTTT
259 GCCAGCGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTACTGTCCTACCCTCGATCCGGTCT
* * *
14550451 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAA
324 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
**
14550516 CCCATGAAACGAGCGTGCGGG
389 CCCACAAAACGAGCGTGCGGG
14550537 CATTCAGTCG
Statistics
Matches: 352, Mismatches: 52, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
499 1 0.00
500 90 0.26
501 1 0.00
502 2 0.01
503 1 0.00
509 1 0.00
510 1 0.00
511 3 0.01
512 153 0.43
513 99 0.28
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (501 bp):
TGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAACGAACGTGCG
AACGCTGAGCCGACCGGAGACGCATAATCCGCAAGCCAGGGATCAGCCCGATCACCCTCTACATG
CTACCGGTCCCACTACCACAACCCTCGATCAGGCTAGGGCTTAGACATGGAATGAACTCCCCATG
CCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGTAAGC
CAGCGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTACTGTCCTACCCTCGATCCGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
CACAAAACGAGCGTGCGGGTGCTTAGCTGGCCGAAGAGGCAGAATGCACAAGACAAGGATCGGCC
CGGTCCCCCCTACGTGCTGTCGATCTTACTACCGTAACCCTCGTTT
Found at i:14550407 original size:159 final size:157
Alignment explanation
Indices: 14549979--14550425 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 157
14549969 AACTCGGTAT
* *
14549979 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14550044 CTGGCCGAAGAGGCAGAATGCACAAGACAAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCT
66 CTGGCCGGAGAGGCAGAATGCGCAAG-CCAGGATCGACCCGGTCCCCCTTACGTGCTGTCGATCC
* ** ***
14550109 TACTACCGTAACCCTCGTTTTGATCCAA
130 CACTACCACAACCCTCGTCAGGATCCAA
* * * *
14550137 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
** * * * * * * * *
14550201 GCCAGTCGGAGACGCATAATGTGCAAGCTGATGATC-AGCCCGATCCCCCTTTACGTGCTGTCGG
65 GCTGGCCGGAGAGGCAGAATGCGCAAGC-CAGGATCGA-CCCGGTCCCCC-TTACGTGCTGTCGA
* * ***
14550265 TCCCGCTACCACAACCCTCGATCAGGCT-GGG
127 TCCCACTACCACAACCCTCG-TCAGGATCCAA
* * *
14550296 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *
14550361 TTGGCCGGAGAGGCAGAATGCGTAAGCCAGCGATCGACCCGGTCCCCCTTGCGTGCTGCCGATCC
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCAG-GATCGACCCGGTCCCCCTTACGTGCTGTCGATCC
14550426 TACTGTCCTA
Statistics
Matches: 229, Mismatches: 52, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 106 0.46
159 116 0.51
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGATCGACCCGGTCCCCCTTACGTGCTGTCGATCCC
ACTACCACAACCCTCGTCAGGATCCAA
Found at i:14550490 original size:26 final size:26
Alignment explanation
Indices: 14550454--14550506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14550444 CTGGTTTGAT
14550454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14550480 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14550506 C
1 C
14550507 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14551725 original size:158 final size:158
Alignment explanation
Indices: 14551203--14552021 Score: 708
Period size: 158 Copynumber: 5.2 Consensus size: 158
14551193 ACTCTATAAG
* *
14551203 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAGC
* * * * * * * * *
14551268 CAACCGGAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCTCCCACTGCGTGCTGTTGATCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGATCC
* * * *
14551333 TACTGCCATAACCCTTGGTTCGATCTGAT
131 TGCTGCCACAACCC-TCGTCCGATCTGAT
* ** * * * * * * *
14551362 CTTAGAC-TGGGAATGAACTCCATATGGATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG
* * * * * * * * *
14551426 TCGATCAAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTA-CCAGT
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGA-T
** * * * * **
14551490 CCCACTGCCATAATCCTCTGTCTG-GCTGGGG
129 CCTGCTGCCACAACCCTC-GTCCGATCT-GAT
* * *
14551521 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGTGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAGC
** * *
14551586 CGACCAGAGAGGCAGAACACGCAAGTCGGGGATCGGCCC-AGTCCCCCCCTGCGTGCTATCGATC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCGTGCTATCGATC
* *
14551650 TTGCTACCACAACCCTCGTCCGATCTGAT
130 CTGCTGCCACAACCCTCGTCCGATCTGAT
* * * * * ** *
14551679 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGGCAACCCACAAAACGAGCA-TACGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGAGTGCGGGTGCTCA
* ** * * ** *
14551742 GCTGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGAT-CCCCTCTGCGTGCTGCCGGT
64 GCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGAT
* **
14551806 CCCGCTGCCACAACCCTCGATCCGA-CTGGGG
129 CCTGCTGCCACAACCCTCG-TCCGATCT-GAT
* * *
14551837 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TGGACGTGCGGGTGCTCGG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGA-GTGCGGGTGCTCAG
* * * * *
14551901 TCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAAT-CCCCTCTGCGTTCTATCGATC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGATC
* *
14551965 CTGCTGCCGCAACCCTCGGTCC-AGTCCGAT
130 CTGCTGCCACAACCCTC-GTCCGA-TCTGAT
14551995 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14552022 TTAGACCGGG
Statistics
Matches: 517, Mismatches: 123, Indels: 41
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.00
157 37 0.07
158 240 0.46
159 235 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCGTCCGATCTGAT
Found at i:14551911 original size:316 final size:316
Alignment explanation
Indices: 14551202--14552021 Score: 992
Period size: 316 Copynumber: 2.6 Consensus size: 316
14551192 AACTCTATAA
* *
14551202 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGA-CGTGCGGGTGCTCAG
* * * * * * *
14551267 CCAACCGGAGAGGCAGAATACACAAGCCGGGGATCGACCC-GATCTCCCACTGCGTGCTGTTGAT
65 CCGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAG-TCCCCCACTGCGTGCTATCGAT
* * * * * * *
14551331 CCTACTGCCATAACCCTTGGTTCGATCTGATCTTAGACTGGGAATGAACTCCATATGGATAAGTC
129 CCTGCTGCCACAACCC-TCGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGGC
** * * * *
14551396 AACCCATGAAATGAGCGTGCGGGCGCTGAGTCGATCAAAGAGGCATAATGCGCAAGCCGAGGATC
193 AACCCACAAAACGAGCATACGGGCACTGAGTCGATCAAAGAGGCATAATGCGCAAGCCGAGGATC
* * * *
14551461 AGCCCGATCCCCCTCTACATGCTACCAGTCCCACTGCCATAATCCTCTGTCTGGCTGGG
258 AGCCCGATCCCCCTCTACATGCTACCAGTCCCACTGCCACAACCCTCTGTCCGACTGGG
* *
14551520 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGA-GTGCGGGTGCTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA--GGACGTGCGGGTGCTCA
* * *
14551584 GCCGACCAGAGAGGCAGAACACGCAAGTCGGGGATCGGCCCAGTCCCCCCCTGCGTGCTATCGAT
64 GCCGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCACTGCGTGCTATCGAT
* * * *
14551649 CTTGCTACCACAACCCTCGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGCA
129 CCTGCTGCCACAACCCTCGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGGCA
** *
14551714 ACCCACAAAACGAGCATACGGGCACTGAG-CTGA-CTGGAGAGGCATAATGCGCAAGCCGGGGAT
194 ACCCACAAAACGAGCATACGGGCACTGAGTC-GATC-AAAGAGGCATAATGCGCAAGCCGAGGAT
* * * * *
14551777 C-GACCCGAT-CCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTC-GATCCGACTGGG
257 CAG-CCCGATCCCCCTCTACATGCTACCAGTCCCACTGCCACAACCCTCTG-TCCGACTGGG
*
14551836 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGTGCTCGG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGACGTGCGGGTGCTCAG
* * * * * * *
14551901 TCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAAT-CCCCTCTGCGTTCTATCGATC
65 CCGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCACTGCGTGCTATCGATC
* *
14551965 CTGCTGCCGCAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
130 CTGCTGCCACAACCCTC-GTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGC
14552022 TTAGACCGGG
Statistics
Matches: 431, Mismatches: 61, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
315 38 0.09
316 170 0.39
317 99 0.23
318 121 0.28
319 1 0.00
320 2 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGACGTGCGGGTGCTCAGC
CGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCACTGCGTGCTATCGATCC
TGCTGCCACAACCCTCGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGGCAAC
CCACAAAACGAGCATACGGGCACTGAGTCGATCAAAGAGGCATAATGCGCAAGCCGAGGATCAGC
CCGATCCCCCTCTACATGCTACCAGTCCCACTGCCACAACCCTCTGTCCGACTGGG
Found at i:14559495 original size:184 final size:184
Alignment explanation
Indices: 14559185--14559544 Score: 468
Period size: 184 Copynumber: 2.0 Consensus size: 184
14559175 GGCTGGGGGT
* * * *
14559185 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCG
* * * * ** * *
14559250 GCCAAAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGATCCCTCCTGTGTGCTTTCGATCCTGT
66 ACCAAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGC
*
14559315 TGCCATAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCA
131 TGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCA
* *
14559369 TAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACAAGGGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCG
* ** * * * *
14559434 ATCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCTACGTTCTGTCGATCCTGC
66 ACCAAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGC
* * * * * *
14559499 TGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
131 TGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTC
14559545 TATATGCCTA
Statistics
Matches: 148, Mismatches: 28, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
184 148 1.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCG
ACCAAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGC
TGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCA
Found at i:14559750 original size:159 final size:158
Alignment explanation
Indices: 14559369--14559827 Score: 496
Period size: 158 Copynumber: 2.9 Consensus size: 158
14559359 TCCGTATGCA
* *
14559369 TAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACAAGGGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
14559434 ATCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCTACGTTCTGTCGATCCTGC
66 ACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGC
* * * ** *
14559499 TGTCGCAACCCTTGGTCCGGTCTGATCT
131 TGCCACAACCCTAGGTCCGAACTGATAT
** * * *
14559527 TAGAC-TGGGAATGAACTCTATATGCCTAAGTTAACCCATGGAACGAGCGTGCGGGTGCTGAGCC
1 TAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* *
14559591 GACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCC-AGT-C
65 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGCCGA-TCC
*
14559654 TCGCTGCCACAACCCTAGGTTC-AACTGGGA-AT
128 T-GCTGCCACAACCCTAGGTCCGAACT--GATAT
** * * * * *
14559686 TAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGCGCTTGTGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
14559751 GCCGGAGAGGCAGAATGCGCAAGCTGGAGATCGGCTCGGTCCCCCCTTCGTGCTGCTGATCCTGT
66 ACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGC
14559816 TGCCACAACCCT
131 TGCCACAACCCT
14559828 CAGTTCATTT
Statistics
Matches: 249, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.00
158 124 0.50
159 121 0.49
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
ACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGC
TGCCACAACCCTAGGTCCGAACTGATAT
Found at i:14560488 original size:11 final size:11
Alignment explanation
Indices: 14560472--14560526 Score: 83
Period size: 11 Copynumber: 5.0 Consensus size: 11
14560462 TGGTTAGGCT
*
14560472 CTCCGGCGATG
1 CTCCGACGATG
*
14560483 CTCCGGCGATG
1 CTCCGACGATG
*
14560494 CTCTGACGATG
1 CTCCGACGATG
14560505 CTCCGACGATG
1 CTCCGACGATG
14560516 CTCCGACGATG
1 CTCCGACGATG
14560527 GTGCCTGGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 41 1.00
ACGTcount: A:0.15, C:0.35, G:0.31, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14560633 original size:26 final size:26
Alignment explanation
Indices: 14560595--14560647 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14560585 GGCTCAAAAT
14560595 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14560621 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14560647 C
1 C
14560648 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.