Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 86 of 138
Found at i:14561127 original size:26 final size:26
Alignment explanation
Indices: 14561098--14561149 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14561088 CAGTCTGATG
*
14561098 TTAGACTTGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
14561124 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
14561150 CTAAGTCAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14563799 original size:26 final size:25
Alignment explanation
Indices: 14563760--14563811 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14563750 GGTTCAAAAT
14563760 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
14563785 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
14563811 C
1 C
14563812 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:14564289 original size:26 final size:26
Alignment explanation
Indices: 14564260--14564312 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14564250 CCGATCAAAT
14564260 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14564286 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14564312 C
1 C
14564313 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14565423 original size:26 final size:26
Alignment explanation
Indices: 14565386--14565435 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14565376 GCTCAAAATA
14565386 TTAGACTGGGAATGAACTCCGTATAC
1 TTAGACTGGGAATGAACTCCGTATAC
14565412 TTAGACAT-GGAATGAACTCCGTAT
1 TTAGAC-TGGGAATGAACTCCGTAT
14565436 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAC
Found at i:14565925 original size:158 final size:157
Alignment explanation
Indices: 14565411--14565986 Score: 593
Period size: 159 Copynumber: 3.6 Consensus size: 157
14565401 ACTCCGTATA
** *
14565411 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * * * * *
14565475 CCGGTCGGAGAGCCAGAATGCGAAAGTCGGGGATCGACCC-ACTCTCCCCCTGTATGCGGTCGAT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TC-CCCCCTGTGTGCTGTCGAT
* * *
14565539 CCTGCTACCTCAACCCTCGATCTGGTCCGAT
128 CCTGCTA-CTCAACCCTCGGTCTGGTCTGAC
* * * *
14565570 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
* * * * * * *
14565635 TGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCGCGGTTCCCCACTGTGTGCTGTCGGTCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CCGATCCCCCCTGTGTGCTGTCGATCC
* * * **
14565700 CGCTGCCACAACCCTCGGTCTGG-CTGGGG
130 TGCT-ACTCAACCCTCGGTCTGGTCT-GAC
* * *
14565729 GTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGGGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * ** * *
14565793 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTGCCAATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCC
*
14565858 TACTACTGCAACCCTCGGTCTGGTCTGAC
130 TGCTACT-CAACCCTCGGTCTGGTCTGAC
* * * ** * * *
14565887 CTTAGACTGGGGATGAACTCCGTATGCCTCAGTCAACCCACAAAACAAGCTTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
** * *
14565952 CGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCG
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
14565987 AACGGGTGGT
Statistics
Matches: 338, Mismatches: 70, Indels: 19
0.79 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 120 0.36
159 212 0.63
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCCT
GCTACTCAACCCTCGGTCTGGTCTGAC
Found at i:14566610 original size:26 final size:26
Alignment explanation
Indices: 14566572--14566624 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14566562 GGCCCAAAAT
14566572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14566598 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
14566624 C
1 C
14566625 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14567014 original size:159 final size:156
Alignment explanation
Indices: 14566597--14567099 Score: 401
Period size: 158 Copynumber: 3.2 Consensus size: 156
14566587 AACTCCGTAT
* * * * * *
14566597 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGTGGGTGTTTAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
**
14566662 CCGGCCGGGGAGGCAGAATGCGCAAGCCGAAGATCGACCCGGTCCCCCCTGCATGCTGTC-AATC
65 CCGGCCGAAGAGGCAGAATGCGCAAG-C-AAGATCGACCCGGTCCCCCCTGCATGCTGTCGAATC
* * *
14566726 TAAATGCAGCAACCTTCGATCCGGTCTGA
128 CAAATCCAGCAACCCTCGATCCGGTCTGA
* * * * * * ** *
14566755 TCTTACACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGTGTATGCGGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
14566820 TCGGCCGAAGAGGCATAATGCGCAACGCAGGGATCGACCCGGTCCCCCTCTACATGCTGTCGGTT
65 CCGGCCGAAGAGGCAGAATGCGCAA-GCA-AGATCGACCCGGTCCCCC-CTGCATGCTGTCGAAT
* * * *
14566885 CC-ACTACCA-CAACCCTCGGTCTGG-CTGGG
127 CCAAAT-CCAGCAACCCTCGATCCGGTCT-GA
* *
14566914 GCTTAGACATGGAATGAACT-CGCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCG-TATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
14566978 ACCGGCCGTAGAGGCAGAATGCGCAAGTCATAGATCGGA-TCGGTCCCCCCTGCGTGCTGTCG-A
64 GCCGGCCGAAGAGGCAGAATGCGCAAG-CA-AGATC-GACCCGGTCCCCCCTGCATGCTGTCGAA
*** * * * *
14567041 TCCTGCTGTCA-CAACCCTTGGTCCGGTCCGA
126 TCCAAAT-CCAGCAACCCTCGATCCGGTCTGA
* *
14567072 TCTTAGATTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
14567100 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 58, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 143 0.53
159 116 0.43
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCAAGATCGACCCGGTCCCCCCTGCATGCTGTCGAATCCAA
ATCCAGCAACCCTCGATCCGGTCTGA
Found at i:14567102 original size:26 final size:26
Alignment explanation
Indices: 14567073--14567125 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14567063 CCGGTCCGAT
*
14567073 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14567099 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14567125 C
1 C
14567126 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14567495 original size:26 final size:26
Alignment explanation
Indices: 14567478--14567537 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
14567468 TAGACTGGGA
14567478 ATGAACTCCGCATGCTTAGATGGGGT
1 ATGAACTCCGCATGCTTAGATGGGGT
*
14567504 ATGAACTTCGCATGCTTAGATGGGGT
1 ATGAACTCCGCATGCTTAGATGGGGT
14567530 ATGAACTC
1 ATGAACTC
14567538 TGTATGCATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
ATGAACTCCGCATGCTTAGATGGGGT
Found at i:14567544 original size:26 final size:26
Alignment explanation
Indices: 14567478--14567544 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
14567468 TAGACTGGGA
*
14567478 ATGAACTCCGCATGCTTAGATGGGGT
1 ATGAACTCTGCATGCTTAGATGGGGT
14567504 ATGAACT-TCGCATGCTTAGATGGGGT
1 ATGAACTCT-GCATGCTTAGATGGGGT
*
14567530 ATGAACTCTGTATGC
1 ATGAACTCTGCATGC
14567545 ATAAGTCAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 36 0.97
27 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (26 bp):
ATGAACTCTGCATGCTTAGATGGGGT
Found at i:14568266 original size:26 final size:26
Alignment explanation
Indices: 14568215--14568267 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14568205 GGCTCAAAAT
* *
14568215 CTTAGACTGGCAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCCTATG
14568241 CTTAGACATGG-AATGAACTCCCTATG
1 CTTAGAC-TGGCAATGAACTCCCTATG
14568267 C
1 C
14568268 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCCTATG
Found at i:14568532 original size:157 final size:157
Alignment explanation
Indices: 14568241--14568532 Score: 372
Period size: 157 Copynumber: 1.9 Consensus size: 157
14568231 ACTTCGTATG
* * * * *
14568241 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* * * * * * *
14568306 CGGTCGAAGAGGCAAAATGCACAAGTCGGGGATCAACCCGGTCCCTTCTATGTGCTGTCGATCCT
66 CAGCCGAAGAGGCAAAATGCACAAGTCGGGGATCAACCCGGCCCCCTCTACGGGCTGTCGATCCC
14568371 GCTACTGCAACCCTTGGTCTGATCGAT
131 GCTACTGCAACCCTTGGTCTGATCGAT
* * *
14568398 CTTAGAC-TAGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * *
14568462 CCAGCCGGAGAGGCATAATGCGCAAG-CGGGGATCAGCCCGGCCCCCCTCTGCGGGCTGTCGATC
65 CCAGCCGAAGAGGCAAAATGCACAAGTCGGGGATCAACCCGG-CCCCCTCTACGGGCTGTCGATC
14568526 CCGCTAC
129 CCGCTAC
14568533 CGGTCTTGCT
Statistics
Matches: 113, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
156 15 0.13
157 98 0.87
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
CAGCCGAAGAGGCAAAATGCACAAGTCGGGGATCAACCCGGCCCCCTCTACGGGCTGTCGATCCC
GCTACTGCAACCCTTGGTCTGATCGAT
Found at i:14568752 original size:169 final size:169
Alignment explanation
Indices: 14568378--14568763 Score: 395
Period size: 169 Copynumber: 2.3 Consensus size: 169
14568368 CCTGCTACTG
* *
14568378 CAACCCTTGGTCTGATC-GATCTTAGACTAGGAATGAACTCCGTATGCCAAAGTCAACCCACGAA
1 CAACCCTTGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCAAAGCCAACCCACGAA
* * * *
14568442 ACGAGCGTGCGAGTGCTCAGCCAGCCGGAGAGGCATAATGCGCAAGCGGGGATCAGCCCGGCCCC
65 AAGAGCGTGCGAGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCGGGGATCAGCCCAGCCCC
* * *
14568507 CCTCTGCGGGCTGTCGATCCCGCTACCGGTCTTGCTGCAA
130 CCTCTACGGGCTGTCGATCCCACTACCGGTCCTGCTGCAA
* * * * * *
14568547 CAACCCTCGGT-TCAG-CTGCAACTTAGACATGGAATGAACTCGGTATGCCTAAGCCAACCCATG
1 CAACCCTTGGTCT-GGTCTG-ATCTTAGAC-TGGAATGAACTCCGTATGCCAAAGCCAACCCACG
* * * * **
14568610 AAAAGAGCGT-CGGGCGCTTAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAG-
63 AAAAGAGCGTGCGAGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCAGCCCAGC
* * * * * * **
14568673 TCCCCTCTATGTGCTGTCGATCCTACTGCTGGTCCTGCTGCCG
127 CCCCCTCTACGGGCTGTCGATCCCACTACCGGTCCTGCTGCAA
* * *
14568716 TAACCTTTGGTCTGGTCTGATCTAAGACTGGGAATGAACTCCGTATGC
1 CAACCCTTGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGC
14568764 TTAGACATGG
Statistics
Matches: 173, Mismatches: 36, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
168 3 0.02
169 107 0.62
170 62 0.36
171 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (169 bp):
CAACCCTTGGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAA
AGAGCGTGCGAGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCGGGGATCAGCCCAGCCCCC
CTCTACGGGCTGTCGATCCCACTACCGGTCCTGCTGCAA
Found at i:14569238 original size:525 final size:521
Alignment explanation
Indices: 14568213--14569974 Score: 1832
Period size: 525 Copynumber: 3.4 Consensus size: 521
14568203 GTGGCTCAAA
* * *
14568213 ATCTTAGACTGGCAATGAACTTCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * ** * * * * *
14568278 CCACTAAATGGGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCACAAGTCGGGGATCAAC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGAC
* ** ** * *
14568343 CCGGTCCCTTCTATGTGCTGTCGATCCTGCTA-CTGCAACCCTTGGTCT-GATC-GATCTTAGAC
131 CCGATCCCCCCTGCGTGCTGTCAATCCTGCTATC-GCAACCCTCGGTCTCGATCTGATCTTAGAC
* *
14568405 TAGGAATGAACTCCGTATGCCA-AAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGCCAGCCG
195 TAGGAATGAACTCCGTATG-CATAAGTCAACCCACGAAACGAGCGTGCGA-TGCTGAGCCAGTCG
* * * * *
14568469 GAGAGGCATAATGCGCAAGCGGGGATC-AGCCCGGCCCCCCTCTGCGGGCTGTCGATCCCGCTAC
258 GAGAGGCATAATGCGCAAGCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGACGATCTCGCTGC
* * * * *** *
14568533 CGGTCTTGCTGCAACAACCCTCGGTTC-AGCTGCAACTTAGACATGGAATGAACTCGGTATGCCT
322 CAGTCCTGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* *
14568597 AAGCCAACCCATGAAAAGAGCGT-CGGGCGCTTAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGG
386 AAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCC--
* * * * *** * * *
14568661 GGATTGGCCCAGTCCCCTCTATGTGCTGTCGATCCTACTGCTGGTCCTGCTGCCGTAACCTTTGG
449 AGATTGGCTCGGTCCCCCCTGCATGCTGTCGATCCT-GTGCTGGTCCTGCTGCCGCAACCCTTGG
14568726 TCTGGTCTG
513 TCTGGTCTG
* *
14568735 ATCTAAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * *
14568800 CCACGAAACGAGCGTGTAGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGAC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGAC
* *
14568865 TCGATCCCCCCCTGCGTGCTGTCAATCCTGCTATCGCAACCCTCGGTCTAG-TCTGATCTTAGAC
131 CCGAT-CCCCCCTGCGTGCTGTCAATCCTGCTATCGCAACCCTCGGTCTCGATCTGATCTTAGAC
* * * *
14568929 TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCAGATGCTGAGCCGGTCGG
195 TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGC-GATGCTGAGCCAGTCGG
* * * * *
14568994 ACAGGCATAATACGCAATCTGGGGATCGACCTGGTCCCCCTCTGCGTGCTGCCGATCTCGCTGCC
259 AGAGGCATAATGCGCAAGC-GGGGATCGACCCGGTCCCCCTCTGCGTGCTGACGATCTCGCTGCC
* * *
14569059 AGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATCCCTAA
323 AGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * * *
14569124 GCCAACCCACGAAACGAGCGTGCGGGGGCTCAACCGGTCGAAGATGCAGAATGCGCAAGCCACTG
388 GCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCA--G
*
14569189 ATTGGCTCGGTCCCCCCTGCATGCTGTCGATCCTGTGCTGGTCCTGCTGCCGCAACCCTCGGTCT
451 ATTGGCTCGGTCCCCCCTGCATGCTGTCGATCCTGTGCTGGTCCTGCTGCCGCAACCCTTGGTCT
*
14569254 GGTCCG
516 GGTCTG
* **
14569260 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTATGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * *
14569325 CTACCAAACTAGCGTGCGGGCGTTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGAC
* * * * * *
14569390 CCGGTCCCCCC--CAGTACGCTGTCGATCCTGTTGTCACAACCCTCAGTC-CGATCTGATCTTAG
131 CCGATCCCCCCTGC-GT--GCTGTCAATCCTGCTATCGCAACCCTCGGTCTCGATCTGATCTTAG
* *
14569452 ACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCAGTC
193 ACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGC-GATGCTGAGCCAGTC
* * *
14569517 GAAGAGGCATAATGCACAAGCCGGGGATCCG-CCCGAT--CCC-C--C-TG-T-ACG---T-GCT
257 GGAGAGGCATAATGCGCAAG-CGGGGAT-CGACCCGGTCCCCCTCTGCGTGCTGACGATCTCGCT
* * * * *
14569569 GCCAGTCCCGCTGCCACAACCTTCGGTCTGACTGGGGCCTAGACATGGAATGAACTCCCTATGCC
320 GCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCC
* * * * * *
14569634 TAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCTGGCCGGAA-AGGCAGAATGCGCAAGTC
385 TAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGGTC-GAAGAGGCAGAATGCGCAAGCC
* ** * * * * ** * *
14569698 AG---GGATCGG--CCCGATGCCTCCTG-CG-TGCTGT-TTAATCCCGCTGCCACAACCCTTGGT
449 AGATTGGCTCGGTCCCCCCTGCATGCTGTCGATCCTGTGCTGGTCCTGCTGCCGCAACCCTTGGT
14569755 CTGGTCTG
514 CTGGTCTG
* * * *
14569763 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATTCATAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14569827 CCCACGAAACGAGCATGCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGGCGGGGACCGG
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGA
* ** * * * *
14569892 CCTGAT-CCCCCTGCGTGCTGTCAATCCTGCTGCCGTAACTCTTGGT-TCGATCCGATCTTAGAC
130 CCCGATCCCCCCTGCGTGCTGTCAATCCTGCTATCGCAACCCTCGGTCTCGATCTGATCTTAGAC
* * *
14569955 TGGGGATAAACTCCGTATGC
195 TAGGAATGAACTCCGTATGC
14569975 TTAGACTGGG
Statistics
Matches: 1041, Mismatches: 176, Indels: 67
0.81 0.14 0.05
Matches are distributed among these distances:
501 53 0.05
502 6 0.01
503 138 0.13
504 6 0.01
505 2 0.00
506 10 0.01
508 6 0.01
511 1 0.00
513 111 0.11
514 4 0.00
517 2 0.00
518 1 0.00
519 2 0.00
520 1 0.00
522 116 0.11
523 44 0.04
524 88 0.08
525 382 0.37
526 68 0.07
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (521 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGAC
CCGATCCCCCCTGCGTGCTGTCAATCCTGCTATCGCAACCCTCGGTCTCGATCTGATCTTAGACT
AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGATGCTGAGCCAGTCGGAG
AGGCATAATGCGCAAGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGACGATCTCGCTGCCAGT
CCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCAGATTGG
CTCGGTCCCCCCTGCATGCTGTCGATCCTGTGCTGGTCCTGCTGCCGCAACCCTTGGTCTGGTCT
G
Found at i:14569587 original size:159 final size:159
Alignment explanation
Indices: 14569288--14569791 Score: 382
Period size: 159 Copynumber: 3.2 Consensus size: 159
14569278 ACTCCGTATG
** * * * * *
14569288 CTTAGAC-ATGGAATGAACTATGTATGCCTAAGCCAACCTACCAAACTAGCGTGCGGGCGTTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * *
14569352 TC-GATCGGAGAGGCAGAATGCGTAAGCCGGGGAT-CGACCCGGT-CCCCC-CCAGTACGCTGT-
65 CCAG-CCGGAAAGGCAGAATGCACAAGCCAGGGATCCG-CCCGATGCCCCCTGC-GT--GCTGTC
* * * * * *
14569412 CGATCCTGTTGTCACAACCCTCAGTCCGATCTGAT
125 CAATCCCGCTGCCACAACCCTCGGTCTGATCTGAT
* * * *
14569447 CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14569512 CAGTC-GAAGAGGCATAATGCACAAGCCGGGGATCCGCCCGAT-CCCCCTGTACGTGCTG-CCAG
66 CAGCCGGAA-AGGCAGAATGCACAAGCCAGGGATCCGCCCGATGCCCCCTG--CGTGCTGTCCAA
* **
14569574 TCCCGCTGCCACAACCTTCGGTCTGA-CTGGGG
128 TCCCGCTGCCACAACCCTCGGTCTGATCT-GAT
* * * * * * *
14569606 CCTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * **
14569670 CTGGCCGGAAAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATGCCTCCTGCGTGCTGTTTAATC
65 CCAGCCGGAAAGGCAGAATGCACAAGCCAGGGATCCGCCCGATGCCCCCTGCGTGCTGTCCAATC
* *
14569735 CCGCTGCCACAACCCTTGGTCTGGTCTGAT
130 CCGCTGCCACAACCCTCGGTCTGATCTGAT
*
14569765 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
14569792 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 58, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
158 12 0.04
159 242 0.89
160 15 0.06
161 2 0.01
162 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGGAAAGGCAGAATGCACAAGCCAGGGATCCGCCCGATGCCCCCTGCGTGCTGTCCAATCC
CGCTGCCACAACCCTCGGTCTGATCTGAT
Found at i:14569801 original size:26 final size:26
Alignment explanation
Indices: 14569765--14569815 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14569755 CTGGTCTGAT
14569765 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14569791 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14569816 TCATAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14569977 original size:26 final size:26
Alignment explanation
Indices: 14569948--14570000 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14569938 TCGATCCGAT
14569948 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
*
14569974 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
14570000 C
1 C
14570001 GTGTTGCCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTATG
Found at i:14570256 original size:26 final size:26
Alignment explanation
Indices: 14570220--14570270 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14570210 TCGGTCTGAT
*
14570220 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14570246 CTTAGACTGGGGATGAACTCTATAT
1 CTTAGACTGGGAATGAACTCCATAT
14570271 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14570961 original size:26 final size:27
Alignment explanation
Indices: 14570932--14570989 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
14570922 CCAGTCTGAT
14570932 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
* *
14570958 CTTAGACTGGGGATTAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
14570985 CTTAG
1 CTTAG
14570990 TCAACCCACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:14572072 original size:158 final size:158
Alignment explanation
Indices: 14571790--14572405 Score: 524
Period size: 158 Copynumber: 3.9 Consensus size: 158
14571780 CCCTTCTGCG
* * * *
14571790 TGCTGCCGATCCTACTACCACAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTA
1 TGCTGCCGATCCTGCTACCATAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTA
** * ** * * * *
14571855 TGCCTAAGCCAACCCACGGAACGAGTGT-ATGGGTGCTCAGCCAACCAAAAAGTAGAATGCTCAA
66 TGCCTAAGCCAACCCACAAAACGAGCGTGA-GGGCACTCAGCCAACCAAGAGGCAGAATGCGCAA
* * * *
14571919 GCCGGGGACCAGCCCAGTCCCCCCCTGTA
130 GCCGGGGATCGGCCCGGTCCCCCCCTGAA
* * * * * **
14571948 TGCTGTCGATCCTGCTACCGTAACCGTCGATCCGATCTAATCTTAGACTGGGAATGAACTTTGTA
1 TGCTGCCGATCCTGCTACCATAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTA
* * ** * * * * *
14572013 TGCCTAAGTCAACCCA-TAAACGAGCGTGAGGGTGCTGAGCCGACCGAAGAGGCATAATGCTCGA
66 TGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCAGCCAACC-AAGAGGCAGAATGCGCAA
* * * **
14572077 GCCGGAGATTGGCCCGGTCCCCCTCTGCG
130 GCCGGGGATCGGCCCGGTCCCCCCCTGAA
* * * * * ** *
14572106 TGCTACCGGTCCCGCTGCCATAACCCTCGATCTG-GCTGGGGCTTAGACAT-GGAATGAACTCCC
1 TGCTGCCGATCCTGCTACCATAACCCTCGATCTGATCT-GATCTTAGAC-TGGGAATGAACTCCG
* * * * * *
14572169 TATGCCTAAGCCGACCCACAAAATGGGCGTGTGGGCACTCAGCCAACCGGAGAGGCAGAATGCGA
64 TATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCAGCCAACC-AAGAGGCAGAATGCGC
*
14572234 AAGCCGGGGATCGGCCCGGTCCACCCCT-AA
128 AAGCCGGGGATCGGCCCGGTCCCCCCCTGAA
* * ** * * * *
14572264 GTGCTGCTGATGCTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CGT
1 -TGCTGCCGATCCTGCTACCATAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGT
* * ** *
14572328 ATGCCTAAGTCAACCCACAAAACGAGCGTGAGGGCACTGAGCCGGCCAGAGAGGCATAATGCGCA
65 ATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCAGCCAACCA-AGAGGCAGAATGCGCA
*
14572393 AGCCGAGGATCGG
129 AGCCGGGGATCGG
14572406 TTCGATCCCC
Statistics
Matches: 358, Mismatches: 91, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
157 24 0.07
158 231 0.65
159 102 0.28
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TGCTGCCGATCCTGCTACCATAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCAGCCAACCAAGAGGCAGAATGCGCAAG
CCGGGGATCGGCCCGGTCCCCCCCTGAA
Found at i:14572950 original size:159 final size:159
Alignment explanation
Indices: 14572650--14573104 Score: 513
Period size: 159 Copynumber: 2.9 Consensus size: 159
14572640 AACTTCGTAT
* * * * **
14572650 GCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
* * * * *
14572715 CCGGCCGGAGAGGCAGAATACTCAAGTCGGGGATCGGTCTGGTCCCCCTCTGCGTGTTGTCGATC
66 CCGGCCGGAGAGGCAGAATACTCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
** * * * **
14572780 CTGCTGTCACAACCTTCGGTCTGGTCT-GA
131 CCACTGCCACAACCCTCGCTCCAG-CTGGA
* * * *
14572809 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
* * * *
14572873 ACCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGT
65 ACCGGCCGGAGAGGCAGAATACTCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGAT
14572938 CCCACTGCCACAACCCTCGCTCCAGCTGGA
130 CCCACTGCCACAACCCTCGCTCCAGCTGGA
* * * * *
14572968 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
* ** * * *
14573033 CCGGCCGGAGAGGCAGAATAATCAAGCC-AGGGATCGGCCCAATCCCCCT-TACGTGCTGCCAAT
66 CCGGCCGGAGAGGCAGAATACTCAAGCCGA-GGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGAT
*
14573096 CCTACTGCC
130 CCCACTGCC
14573105 GCAAGGGATG
Statistics
Matches: 246, Mismatches: 46, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
158 22 0.09
159 223 0.91
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
CCGGCCGGAGAGGCAGAATACTCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
CCACTGCCACAACCCTCGCTCCAGCTGGA
Found at i:14575232 original size:159 final size:157
Alignment explanation
Indices: 14574715--14575236 Score: 464
Period size: 159 Copynumber: 3.3 Consensus size: 157
14574705 AACTTCGTAT
* ** *
14574715 GCTTAGAC-TGAGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * * *
14574779 ACTGGTCGGAGAGGCAGAATGTGCAAGTTGAGGATCGACCTC-GTCCCCCTCTGCGTGCTGCCGG
65 TCCGG-CCGAGAGGCAGAATGCGCAAGTCGGGGATCG-GCTCGGTCCCTCTCTGCGTGCTGTCGG
*
14574843 TCCCGCTACCACAACCTTCGATCCGGCTGGG
128 TCCCGCTACCACAACCTT-GATCCGGTTGGG
* * * ***
14574874 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCTATGAAAC-AGGCGTGCGGGTGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCA
* * * * * * *
14574938 GT-CGGCCGAAGAGGCAGAATACGCAAGCCAGGGACCGGCTTGGTCCCTC-CTACGTGCTGTCGA
65 -TCCGGCCG-AGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCTCTCTGCGTGCTGTCGG
** * * **
14575001 TCTTGCTACCGCAAACCTCGATCCGGTCT-AA
128 TCCCGCTACCAC-AACCTTGATCCGGT-TGGG
* * * * * * *
14575032 TCTTAG-CCTGGGAATGAACTCTGTATGCCCAAGTCAACCCACGAAACGAGCGTGAGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* *
14575096 TCCGGCCAGAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCTCTCTGCGTGCCGTCGGT
65 TCCGGCC-GAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCTCTCTGCGTGCTGTCGGT
* * *
14575161 CCCGTTGCCACAACCCTTGGTCCGGTTGGG
129 CCCGCTACCACAA-CCTTGATCCGGTTGGG
* *
14575191 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
14575237 TGGGTGTGCG
Statistics
Matches: 277, Mismatches: 71, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
157 3 0.01
158 120 0.43
159 151 0.55
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAT
CCGGCCGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCTCTCTGCGTGCTGTCGGTCC
CGCTACCACAACCTTGATCCGGTTGGG
Found at i:14576429 original size:26 final size:26
Alignment explanation
Indices: 14576400--14576450 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14576390 CTGATTCGAT
*
14576400 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
14576426 CTTAGACTGGGGATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
14576451 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:14576615 original size:79 final size:79
Alignment explanation
Indices: 14576484--14576630 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 79
14576474 GCATGCGGAC
* * * * ** *
14576484 GCTCAGTCGGCTGGAGAGGCTGATCGGAGTGGCAGAATGTGCAAGCCAAGGATTAGCCCAATCCC
1 GCTCAGTCGGCCGGAGAGGCCGACCGGAGTGGCAAAATACGCAAGCCAAGGATCAGCCCAATCCC
14576549 CCCTACGTGTGGAT
66 CCCTACGTGTGGAT
* * *
14576563 GCTCAGTCGGCCGGAGGGGCCGACCGGAGTGGCAAAATACGCAAGCCGAGGATCAGCCCGATCCC
1 GCTCAGTCGGCCGGAGAGGCCGACCGGAGTGGCAAAATACGCAAGCCAAGGATCAGCCCAATCCC
14576628 CCC
66 CCC
14576631 CTGCGTGCTA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 58 1.00
ACGTcount: A:0.22, C:0.30, G:0.33, T:0.14
Consensus pattern (79 bp):
GCTCAGTCGGCCGGAGAGGCCGACCGGAGTGGCAAAATACGCAAGCCAAGGATCAGCCCAATCCC
CCCTACGTGTGGAT
Found at i:14576727 original size:26 final size:26
Alignment explanation
Indices: 14576689--14576741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14576679 CCGATCCGAT
14576689 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14576715 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14576741 C
1 C
14576742 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14577068 original size:26 final size:26
Alignment explanation
Indices: 14577039--14577091 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14577029 CTGGTCTGAT
*
14577039 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
*
14577065 CTTAGATTGGGGAAGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
14577091 C
1 C
14577092 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:14577987 original size:26 final size:26
Alignment explanation
Indices: 14577949--14577998 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14577939 GTTCAATCTT
*
14577949 AGACTGGGAATGAACTCTGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
*
14577975 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14577999 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:14578184 original size:26 final size:26
Alignment explanation
Indices: 14578155--14578207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14578145 CCGATCTGAT
14578155 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14578181 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14578207 C
1 C
14578208 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14579025 original size:26 final size:26
Alignment explanation
Indices: 14578996--14579048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14578986 CCGGTCCGAT
14578996 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14579022 CTTAGACTGGGGATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14579048 C
1 C
14579049 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14579120 original size:341 final size:343
Alignment explanation
Indices: 14578490--14579121 Score: 803
Period size: 341 Copynumber: 1.8 Consensus size: 343
14578480 CCTCAGTTTG
*
14578490 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACAAGCGAGTGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACAAGCGAGCGGGC
* * * * **
14578555 GCTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGATCCCCCTTGTGTGCTAC
66 ACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCCTTGCATGCTAC
* * ** *
14578620 CAATCCTGCTACCGCAACCCTTGGTCTGATCCGATCTTAGATCGAGAATGAACTCCATATGCTTA
131 CAATCATCCTACCGCAACCCTCAGTCCGATCCGATCTTAGATCGAGAATGAACTCCATATGCTTA
* * * * *
14578685 TACATGGAATGAACTCCGTATGCATAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
196 GACATGGAATGAACTCCGTATGCATAAGCTAACCAACAAAACGAGCATGCGGACGCTCAGCCGAC
* *
14578750 CGGAAAGGCAAATTGCACAAGCTGGGGATCGGCTCGATTCCCCTCTGCGTGCTGTCGGTCCTACT
261 CAGAAAGGCAAATTGCACAAGCCGGGGATCGGCTCGATTCCCCTCTGCGTGCTGTCGGTCCTACT
14578815 GCCACAACCCTCGATCTA
326 GCCACAACCCTCGATCTA
** *
14578833 GCTGGGGCTT-GACATGGAATGAACTCCCTATGCCTAA-GCTAACCCATGAAACTGGCGTGCGGG
1 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGC-AACCCATGAAACAAGCGAGCGGG
* * * * *
14578896 CACTCAGTCGACCGGAGAGGCAGAATGTGCAAGC-GGGGATCGATCTGAT-CCCCTCTGCATGCT
65 CACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCCT-TGCATGCT
* * * * *
14578959 ACCGATCATCCTATCGCAACCCTCAGTCCGGTCCGATCTTAGA-CTGGGAATGAACTCCGTATGC
129 ACCAATCATCCTACCGCAACCCTCAGTCCGATCCGATCTTAGATC-GAGAATGAACTCCATATGC
* * * *
14579023 TTAGAC-TGGGGATGATCTCCGTATGCCTAA-ATCAACCAACAAAACGAGCATGCGGACGCTCAG
193 TTAGACAT-GGAATGAACTCCGTATGCATAAGCT-AACCAACAAAACGAGCATGCGGACGCTCAG
* * *
14579086 CCGACCAGAGAGGCAGGA-TGCGCAAGCCGGGGATCG
256 CCGACCAGAAAGGCA-AATTGCACAAGCCGGGGATCG
14579122 AACGGGTGGT
Statistics
Matches: 244, Mismatches: 39, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
340 8 0.03
341 150 0.61
342 76 0.31
343 10 0.04
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (343 bp):
GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACAAGCGAGCGGGC
ACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCCTTGCATGCTAC
CAATCATCCTACCGCAACCCTCAGTCCGATCCGATCTTAGATCGAGAATGAACTCCATATGCTTA
GACATGGAATGAACTCCGTATGCATAAGCTAACCAACAAAACGAGCATGCGGACGCTCAGCCGAC
CAGAAAGGCAAATTGCACAAGCCGGGGATCGGCTCGATTCCCCTCTGCGTGCTGTCGGTCCTACT
GCCACAACCCTCGATCTA
Found at i:14579756 original size:26 final size:26
Alignment explanation
Indices: 14579718--14579770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14579708 GGCTCAAACT
14579718 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14579744 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14579770 C
1 C
14579771 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14579950 original size:26 final size:26
Alignment explanation
Indices: 14579914--14579966 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14579904 CTGGTTCGAT
14579914 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
14579940 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14579966 C
1 C
14579967 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14580419 original size:26 final size:26
Alignment explanation
Indices: 14580383--14580435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14580373 CCGGTCCGAT
14580383 CTTAGACTGGGAAGGAACTTTGTATG
1 CTTAGACTGGGAAGGAACTTTGTATG
* *
14580409 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAAGGAACTTTGTATG
14580435 C
1 C
14580436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTTTGTATG
Found at i:14581007 original size:18 final size:16
Alignment explanation
Indices: 14580970--14581003 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14580960 CGCACACCCC
*
14580970 CCGGCACCCCCAATCG
1 CCGGAACCCCCAATCG
14580986 CCGGAACCCCCAAT-G
1 CCGGAACCCCCAATCG
14581001 CCG
1 CCG
14581004 CCGGTTAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.21, C:0.53, G:0.21, T:0.06
Consensus pattern (16 bp):
CCGGAACCCCCAATCG
Found at i:14581661 original size:159 final size:158
Alignment explanation
Indices: 14581131--14581988 Score: 708
Period size: 159 Copynumber: 5.4 Consensus size: 158
14581121 AACTCCGTAT
* ***
14581131 GCTTAGACATGGAATGACCTTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGA-GGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGT-ACGGGCACTCA
* * * ** *
14581195 GCCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGTTCCCCTCTATGTGCTGCCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GATCCCCTCTGCGTGCTGCCAGT
* * *
14581260 CCCGCTGCCAAAACCCTCAGTCTGGCTGGG
129 CCCGCTGCCACAACCCTCGGTCTGACTGGG
* *
14581290 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * * * *
14581355 CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGG-TCCAGCCCGGTCCCCCCTGCATGCTGTCAATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCTCTGCGTGCTGCCAGTC
** * * * * * *
14581419 CTACTGCCGCAACCCTTGGTTTG-GTCCGA
130 CCGCTGCCACAACCCTCGGTCTGACT-GGG
* * ** * * *
14581448 TCTTAGAC-TGGGAATGAACTCCGTACACCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
** *
14581512 GCTAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCGCCCTCTGCGTGCTGCCAGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC-CCCTCTGCGTGCTGCCAGT
*
14581577 CCCGCTGTCACAACCCTCGGTCTGACTGGG
129 CCCGCTGCCACAACCCTCGGTCTGACTGGG
* * * * * *
14581607 GCTTAGGCATGGAATGAACTCCCTACGCCTATGCCAACCCATGAAACG-GACGTACAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCACTCA
* * * *** ** * **
14581671 ACCGGCTGGAGAGGCAAAATGCGCAAGCTATGGCCCGACCCGATCCCCCCCTGCGTGCTG-TTGA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCTCTGCGTGCTGCCAG-
* * * * *
14581735 TACTGCTGCCGCAACCCTCGGTCCGATCT-GA
128 TCCCGCTGCCACAACCCTCGGTCTGA-CTGGG
* ** * ** * * * ** *
14581766 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAATGCATGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * ** * ** *
14581830 GCCGACCGGAAAGGCATAATGCGCAAGTTGGGGAAT-GGCCCGATCCCCTTCTGCGTGCTATCGG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGG-ATCGACCCGATCCCC-TCTGCGTGCTGCCAG
* *
14581894 TCCCACTGCCACAACCCTCGGTCTGGCTGGG
128 TCCCGCTGCCACAACCCTCGGTCTGACTGGG
* * * * *
14581925 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
14581989 TTCAGTCGAA
Statistics
Matches: 547, Mismatches: 133, Indels: 38
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.00
158 134 0.24
159 403 0.74
160 8 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCTGCGTGCTGCCAGTCC
CGCTGCCACAACCCTCGGTCTGACTGGG
Found at i:14581720 original size:317 final size:316
Alignment explanation
Indices: 14581158--14581988 Score: 997
Period size: 318 Copynumber: 2.6 Consensus size: 316
14581148 CCTTTGTATG
* * * * * * *
14581158 CCTAAGCCAACCCACGAAACGAGCGTGA-GGGCACTCAGCCGGCCGGAGAGGTAGAATGCACAAG
1 CCTAAGTCAACCCACGAAATGAGCGT-ACGGGCACTGAG-CAGCCGGAGAGGCATAATGCGCAAG
* ** * *
14581222 CCGGGGATCGACCCGGTTCCCCTCTATGTGCTGCCGGTCCCGCTGCCAAAACCCTCAGTCTGGCT
64 CCGGGGATCGACCC-GATCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCT
* * *
14581287 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAAC-GAGCGTGCGGGCAC
128 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGC
* * * * *
14581351 TCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGTCCAGCCCGGT-CCCCCCTGCATGCTGTC
192 TCAACCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGCCCAGCCCGATCCCCCCCTGCATGCTGTC
* * ** *
14581415 AATCCTACTGCCGCAACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTACA
257 AATACTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTACA
14581475 CCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCTAGCCGGAGAGGCATAATGCGCAAGC
1 CCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGC-AGCCGGAGAGGCATAATGCGCAAGC
* * *
14581540 CGGGGATCGACCCGATCGCCCTCTGCGTGCTGCCAGTCCCGCTGTCACAACCCTCGGTCTGACTG
65 CGGGGATCGACCCGATC-CCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTG
* * * * *
14581605 GGGCTTAGGCATGGAATGAACTCCCTACGCCTATGCCAACCCATGAAACGGACGTACAGGCGCTC
129 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTC
* * * * **
14581670 AACCGGCTGGAGAGGCAAAATGCGCAAGCTATGGCCC-GACCCGATCCCCCCCTGCGTGCTGTTG
194 AACCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGCCCAG-CCCGATCCCCCCCTGCATGCTGTCA
* * * **
14581734 ATACTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATG
258 ATACTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTACA
** * * ** * * *
14581793 CCTAAGTCAATGCATGAAATGAGCGTGCGGGTGCTGAGCCGACCGGAAAGGCATAATGCGCAAGT
1 CCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCAG-CCGGAGAGGCATAATGCGCAAGC
* * ** *
14581858 TGGGGAAT-GGCCCGATCCCCTTCTGCGTGCTATCGGTCCCACTGCCACAACCCTCGGTCTGGCT
65 CGGGG-ATCGACCCGATCCCC-TCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCT
* *
14581922 GGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCT
128 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCT
14581987 CA
193 CA
14581989 TTCAGTCGAA
Statistics
Matches: 437, Mismatches: 68, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
316 6 0.01
317 200 0.46
318 229 0.52
319 2 0.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (316 bp):
CCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCAGCCGGAGAGGCATAATGCGCAAGCC
GGGGATCGACCCGATCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGG
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGCCCAGCCCGATCCCCCCCTGCATGCTGTCAATA
CTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTACA
Found at i:14582101 original size:26 final size:26
Alignment explanation
Indices: 14582072--14582124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14582062 CTAGTTCGAT
*
14582072 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14582098 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14582124 C
1 C
14582125 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14582699 original size:26 final size:26
Alignment explanation
Indices: 14582661--14582713 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14582651 GGCTCAAAAT
**
14582661 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
14582687 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
14582713 C
1 C
14582714 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:14583191 original size:26 final size:26
Alignment explanation
Indices: 14583162--14583214 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14583152 CCAGTCTGAT
14583162 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
14583188 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14583214 C
1 C
14583215 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14583559 original size:26 final size:26
Alignment explanation
Indices: 14583530--14583582 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14583520 CTGATCTGAT
14583530 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* **
14583556 CTTAGACTGGGGTTGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
14583582 C
1 C
14583583 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:14583584 original size:368 final size:356
Alignment explanation
Indices: 14582908--14583595 Score: 837
Period size: 368 Copynumber: 1.9 Consensus size: 356
14582898 CGGGTGCTGA
* * *
14582908 GCCGGTCGAAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGGT
1 GCCGGCCGAAGAGGCATAATGCATAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTGCCGGT
* ** * *
14582973 CCCACTGCCACAACCTTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCC
66 CCCACTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCC
* * * * * *
14583038 AACCCACGAAATAGGTGTGCAGGCACTCAGCCGGTCAGAGAGGCATAATGCGTAAGTCGGGGATC
131 AACCCACGAAAGAGGTGTGCAGGCACTCAACCGATCAGAGAGGCAGAATACGCAAGTCGGGGATC
* * *
14583103 AGCCCGGTCCCCCTTGCGTGCTATCGATCCTATTGCCACAAGCCTCGGTCCAGTCTGATCTTAGA
196 AGCCCGATCCCCCCTGCGTGCTATCGATCCTATTGCCACAACCCTCGGTCCAGTCTGATCTTAGA
14583168 CTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCATATGCCTAAGTCAACCCATGAAA
261 CTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCATATGCCTAAGTCAACCCATGAAA
14583233 CGACCGTGCGGGTGCTCAGTCGGCAGGAGAG
326 CGACCGTGCGGGTGCTCAGTCGGCAGGAGAG
*
14583264 GCCGGCCGGAGAGGCATAATGCATAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTGTCGAT
1 GCCGGCCGAAGAGGCATAATGCATAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGC--T-G--
* * * *
14583329 CCCGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTATGGCTTAGACATGGAATGAACT-TA
61 -CCG--GTC---CC-ACTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCA
* * * * * *
14583393 TATGCCTAAGCCAGCCCATGAAACGA-GTGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATACG
119 TACGCCTAAGCCAACCCACGAAA-GAGGTGTGCAGGCACTCAACCGATCAGAGAGGCAGAATACG
* * * * * *
14583457 CAAGAT-GGGGATCGGCTCGATCCCCCCCTGCGTGTTGTCGATCCTGTTGCCGCAACCCTCGGT-
183 CAAG-TCGGGGATCAGCCCGAT-CCCCCCTGCGTGCTATCGATCCTATTGCCACAACCCTCGGTC
* ** * *
14583520 CTGATCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGTTGAAC-TCTGTATGCC
246 CAG-TCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTC-ATATGCC
14583584 TAAGTCAACCCA
309 TAAGTCAACCCA
14583596 CGAGACAAAC
Statistics
Matches: 276, Mismatches: 39, Indels: 22
0.82 0.12 0.07
Matches are distributed among these distances:
356 54 0.20
358 1 0.00
359 1 0.00
362 3 0.01
364 3 0.01
367 72 0.26
368 142 0.51
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (356 bp):
GCCGGCCGAAGAGGCATAATGCATAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTGCCGGT
CCCACTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCC
AACCCACGAAAGAGGTGTGCAGGCACTCAACCGATCAGAGAGGCAGAATACGCAAGTCGGGGATC
AGCCCGATCCCCCCTGCGTGCTATCGATCCTATTGCCACAACCCTCGGTCCAGTCTGATCTTAGA
CTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCATATGCCTAAGTCAACCCATGAAA
CGACCGTGCGGGTGCTCAGTCGGCAGGAGAG
Found at i:14583819 original size:152 final size:152
Alignment explanation
Indices: 14583543--14583848 Score: 569
Period size: 152 Copynumber: 2.0 Consensus size: 152
14583533 AGACTAGGAA
* *
14583543 TGAACTCTGTATGCTTAGACTGGGGTTGAACTCTGTATGCCTAAGTCAACCCACGAGACAAACGT
1 TGAACTCTGTATGATTAGACTGGGGTTGAACTCTGTAAGCCTAAGTCAACCCACGAGACAAACGT
14583608 GCGAGCGCTCAGCTGACCAGAGAGGCAGGATGCGCAAGCCGACGATCAAACGGGTGGTAAGTGGG
66 GCGAGCGCTCAGCTGACCAGAGAGGCAGGATGCGCAAGCCGACGATCAAACGGGTGGTAAGTGGG
14583673 TTCAAGCACATCTTCATATTTC
131 TTCAAGCACATCTTCATATTTC
14583695 TGAACTCTGTATGATTAGACTGGGGTTGAACTCTGTAAGCCTAAGTCAACCCACGAGACAAACGT
1 TGAACTCTGTATGATTAGACTGGGGTTGAACTCTGTAAGCCTAAGTCAACCCACGAGACAAACGT
*
14583760 GC-AGGCGCTCAGCTGACCAGAGAGGCAGGATGCGCAAGCCGATGATCAAACGGGTGGTAAGTGG
66 GCGA-GCGCTCAGCTGACCAGAGAGGCAGGATGCGCAAGCCGACGATCAAACGGGTGGTAAGTGG
14583824 GTTCAAGCACATCTTCATATTTC
130 GTTCAAGCACATCTTCATATTTC
14583847 TG
1 TG
14583849 CCTTGCCAAT
Statistics
Matches: 150, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
151 1 0.01
152 149 0.99
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (152 bp):
TGAACTCTGTATGATTAGACTGGGGTTGAACTCTGTAAGCCTAAGTCAACCCACGAGACAAACGT
GCGAGCGCTCAGCTGACCAGAGAGGCAGGATGCGCAAGCCGACGATCAAACGGGTGGTAAGTGGG
TTCAAGCACATCTTCATATTTC
Found at i:14584437 original size:26 final size:26
Alignment explanation
Indices: 14584408--14584460 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14584398 GACTCAAAAT
* *
14584408 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATAAACCCCATATG
14584434 CTTAGACATGGAATAAACCCCATATG
1 CTTAGACATGGAATAAACCCCATATG
14584460 C
1 C
14584461 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATAAACCCCATATG
Found at i:14584911 original size:158 final size:157
Alignment explanation
Indices: 14584588--14584926 Score: 353
Period size: 158 Copynumber: 2.1 Consensus size: 157
14584578 ATTCTGGTTA
** * * *
14584588 GATCTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCATGAAACAAGCATACGGGCGCTG
1 GATCTTAGACTGGGAATGAACTCCCTACGCATAAGCCAACCCATGAAACAAGCATACGAGCGCTC
* * * ***
14584653 AGCCGACCGAAGAGGCATAATGCGCATGCCAGGGATCGGCTCGGTCCCCTTTGCATGCTGCCAGT
66 AGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCAGCATGCTGCCAGT
** **
14584718 ACCGCTACCACAACCCTCGGTCTGACT
131 ACCGCTACCACAACCCTCAATCCAACT
* * ** ** *
14584745 GAGGCTTAGACAT-GGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGTGTGCGAGCGC
1 GA-TCTTAGAC-TGGGAATGAACTCCCTACGCATAAGCCAACCCATGAAACAAGCATACGAGCGC
*
14584809 TCAGCCGAGCGAAGAGGCAGAATGCGCAAGCC-GGAGATCGGCCCGGTCCCCCCAGCATGCTGCC
64 TCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGG-GATCGGCCCGGTCCCCCCAGCATGCTGCC
* * *
14584873 -G-ATCCTGCTATCGCAGCCCTCAATCCAATCT
128 AGTA-CC-GCTACCACAACCCTCAATCCAA-CT
*
14584904 GATCTTAGATTGGGAATGAACTC
1 GATCTTAGACTGGGAATGAACTC
14584927 TGTATGCTTA
Statistics
Matches: 147, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.01
157 8 0.05
158 133 0.90
159 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (157 bp):
GATCTTAGACTGGGAATGAACTCCCTACGCATAAGCCAACCCATGAAACAAGCATACGAGCGCTC
AGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCAGCATGCTGCCAGT
ACCGCTACCACAACCCTCAATCCAACT
Found at i:14585511 original size:159 final size:156
Alignment explanation
Indices: 14585084--14585582 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 156
14585074 CCGTTATCGG
14585084 TCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCAGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * ** * * *
14585149 TAACCCACGAAACGAGTGTGCGGGCACTCAGCTGACCAGAGAGGCAGAATGTGCAAGCCGGGGAT
65 CAACCCACGAAATGAGCATGCGGGCACTCAGCCGAACAGAGAGGCAGAATGCGCAAGCCGGGGAT
* * * *
14585214 CGACCCGGTCCCCCCCTCCATGCTTCAA
130 CGACCCGGT-CCCCCCTGCGTGCTCCGA
* * * * * ** *
14585242 TCCTGCTACCGCAACCCTCAGTTCGATCTGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAG
1 TCCTGCTGCCACAACCCTC-GGTCCAGCTGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
* * * * * *
14585306 TCAACCCACGAAATGAGCATGCGGGCGCTGAGCCGAACGGAGAGGCAGAATGCACAAACCGGGGA
64 CCAACCCACGAAATGAGCATGCGGGCACTCAGCCGAACAGAGAGGCAGAATGCGCAAGCCGGGGA
* *
14585371 TCGACCCGATCCCCCTCTGCGTGCTGCCGG
129 TCGACCCGGTCCCCC-CTGCGTGCT-CCGA
* *
14585401 TCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCAGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * ** * * * * *
14585466 CAACCCACGAAATGGGCATGCAGGCACTCAACCGGTCAAAAAGGCAGAATACGCAAGTCGAGGAT
65 CAACCCACGAAATGAGCATGCGGGCACTCAGCCGAACAGAGAGGCAGAATGCGCAAGCCGGGGAT
* * * *
14585531 CGGCTCGGTCCCCCCTGTGTGTTACCGA
130 CGACCCGGTCCCCCCTGCGTGCT-CCGA
**
14585559 TCCTGCTGCTGCAACCCTCGGTCC
1 TCCTGCTGCCACAACCCTCGGTCC
14585583 GGTTCGATCT
Statistics
Matches: 273, Mismatches: 62, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
157 6 0.02
158 153 0.56
159 113 0.41
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (156 bp):
TCCTGCTGCCACAACCCTCGGTCCAGCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAATGAGCATGCGGGCACTCAGCCGAACAGAGAGGCAGAATGCGCAAGCCGGGGATC
GACCCGGTCCCCCCTGCGTGCTCCGA
Found at i:14588092 original size:26 final size:26
Alignment explanation
Indices: 14588054--14588106 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14588044 TCGATCTGAT
14588054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14588080 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14588106 C
1 C
14588107 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14588558 original size:158 final size:157
Alignment explanation
Indices: 14588080--14588573 Score: 453
Period size: 158 Copynumber: 3.1 Consensus size: 157
14588070 ACTCCGTATG
* * *
14588080 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAACATGTGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAC-AACATGTGGGCATTCAGT
* * * * * * * * * * *
14588145 CGGCCGAAGAGGTAGAATGCGTAAGCCGAGAACCAGCCTGGTCCCCCCTGCGTGTTGTCAATCTT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCTGGTCCCCCTTACGTGCTATCGATCCT
* * * * *
14588210 GCTGTCGCAACCCTTGGTCCGGTCCGAT
130 GCTGCCACAACCCTCGGTCCGATCTGAT
* * * * * * *
14588238 CTTAGACAAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCATTTGGGCATTGAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA-CAACATGTGGGCATTCAGT
** * * * * * * *
14588303 CGATCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCTTTATGTGCTATCGAT-CT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCTGGTCCCCCTTACGTGCTATCGATCCT
*
14588367 CGCTGCCACAACCCTCGGTCC-AGCTGGGA-
130 -GCTGCCACAACCCTCGGTCCGATCT--GAT
* * * *
14588396 CTTAGACATGGAATGAACTCCTTATGACTAAGCCAACCCATGAAACATC-TGTGCAGGCATTCAA
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAACATGTG--GGCATTCAG
* * *
14588460 TTGGCCGGAGAGGCAGAATGCGCAAGCC-AGGGACCGGCTTGGTCCCCCTTACATGCTA-CTGAT
64 TCGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGACCGGCCTGGTCCCCCTTACGTGCTATC-GAT
*
14588523 CCTGCTGCCACAACCCACGGTCCGATCTGAT
127 CCTGCTGCCACAACCCTCGGTCCGATCTGAT
14588554 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
14588574 TGTATGCTTA
Statistics
Matches: 264, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 9 0.03
158 245 0.93
159 7 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAACATGTGGGCATTCAGTC
GGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCTGGTCCCCCTTACGTGCTATCGATCCTG
CTGCCACAACCCTCGGTCCGATCTGAT
Found at i:14589774 original size:26 final size:26
Alignment explanation
Indices: 14589737--14589788 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14589727 TGGTCTGATG
14589737 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
14589763 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
14589789 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14590143 original size:26 final size:26
Alignment explanation
Indices: 14590102--14590153 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14590092 CTGGTCCGAT
14590102 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14590128 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
14590154 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14590845 original size:26 final size:26
Alignment explanation
Indices: 14590807--14590859 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14590797 AGCTCAAAAT
14590807 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14590833 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
14590859 C
1 C
14590860 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14591523 original size:330 final size:316
Alignment explanation
Indices: 14590832--14591611 Score: 875
Period size: 317 Copynumber: 2.4 Consensus size: 316
14590822 AACTCCATAT
* * * * *
14590832 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * * * ** * * *
14590897 CTGGCAGCAGAGGCAAAATGCACAAGCCGGGGATTAGCCTGGTCCCCCCTATGTGTTGTCGATCC
66 CCGACCGGAGAGGCAAAATGC-TAAGCCGGGGATCGGCCTGATCCCTCCTATGTGCTGTCGATCC
* * *
14590962 TGCTACCGCAACCCTCAGTGCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATGAGTCAA
130 TGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * * * * *
14591027 CCCACGAAATGAGCGTGCGGGCGTTGAGCTGGTTGAAGAGGCATAATGCGCAACCTGGGGATCGG
195 CCCACGAAACGAGCGTGCGGACGTCGAGCAGGTTGAAGAGGCATAATGCACAACCTGGGGATCAG
* * * ** *
14591092 CCCGGTCCCTCTCTGCATGTTGTCGGTCCCGTTGCCACAACCCTCGGTCTGGCTGGG
260 CCCAGTCCCCCTCTGCATGTTGCCGGTCCCACTGCCACAACCCTCGGTCTGACTGGG
* * *
14591149 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * *
14591214 CCGATCGGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCT-ATCCCTCCTGTGTGCTGTCGATC
66 CCGACCGGAGAGGCAAAATGC-TAAGCCGGGGATCGG-CCTGATCCCTCCTATGTGCTGTCGATC
* * * *
14591278 CTGCTATCGCAACCCTC-GATCCGATCCGATCTTAGACTGGGGATGAACAT-TGTATGCCTAAGT
129 CTGCTACCGCAACCCTCAG-TCCGATCCGATCTTAGACTGGGAATGAAC-TCCGTATGCATAAGT
**
14591341 CAACCCACGAAACGAGCGTGCAGGCACTTAGTCGACCGCAGAGGTCGATCGGCGAGGCATAATGC
192 CAACCCACGAAACGAGCGTGC-GG-AC---GTCGA--GC--AGGT---T-GAAGAGGCATAATGC
** * * *
14591406 ACAGGCTGGGGATCAGCCCAGTCCCCCTCTGCATGTTGCCGGTCCTACTGCCATAACCCTTGGTC
244 ACAACCTGGGGATCAGCCCAGTCCCCCTCTGCATGTTGCCGGTCCCACTGCCACAACCCTCGGTC
14591471 TGACTGGG
309 TGACTGGG
*
14591479 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCG-TTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTT-A
* * * *
14591543 GCCGACCAGAGAGGCAAAATGCTCAAGCCGGGGACCGGCCTGATCCCCTCTTATGTGCTGTTGAT
65 GCCGACCGGAGAGGCAAAATGCT-AAGCCGGGGATCGGCCTGAT-CCCTCCTATGTGCTGTCGAT
14591608 CCTG
128 CCTG
14591612 TTGCTGGTCC
Statistics
Matches: 385, Mismatches: 58, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
316 1 0.00
317 176 0.46
318 6 0.02
319 1 0.00
322 4 0.01
324 2 0.01
326 3 0.01
329 7 0.02
330 164 0.43
331 21 0.05
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
CCGACCGGAGAGGCAAAATGCTAAGCCGGGGATCGGCCTGATCCCTCCTATGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGCGTGCGGACGTCGAGCAGGTTGAAGAGGCATAATGCACAACCTGGGGATCAGC
CCAGTCCCCCTCTGCATGTTGCCGGTCCCACTGCCACAACCCTCGGTCTGACTGGG
Found at i:14591680 original size:26 final size:26
Alignment explanation
Indices: 14591651--14591703 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14591641 CTGGTCCAAT
*
14591651 CTTAGACACGGAATGAACTCCATATG
1 CTTAGACACGGAATGAACGCCATATG
*
14591677 CTTAGACACGGAATGAACGCCGTATG
1 CTTAGACACGGAATGAACGCCATATG
14591703 C
1 C
14591704 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.21
Consensus pattern (26 bp):
CTTAGACACGGAATGAACGCCATATG
Found at i:14592532 original size:26 final size:26
Alignment explanation
Indices: 14592495--14592545 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14592485 CGATCCGATC
14592495 TTAGAATGGGAATGAACTCCATATGA
1 TTAGAATGGGAATGAACTCCATATGA
*
14592521 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGA-ATGGGAATGAACTCCATATG
14592546 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCATATGA
Found at i:14592973 original size:159 final size:158
Alignment explanation
Indices: 14592521--14592974 Score: 446
Period size: 159 Copynumber: 2.9 Consensus size: 158
14592511 CTCCATATGA
* *
14592521 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
14592586 AGTCGGAGAGGCAGAATGCGTAAGCCGAGGATTGGCCCGATCTCCCCCTGCATGCTGTCGATCCT
66 AGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATC-CCCCCTGCATGCTGTCGATCCT
* ** * * *
14592651 GATGCCGTAACCCTTGGTCCAGTCCGATC
130 GCTGCCACAACCCTCGGTCCAGTCAGAGC
* * * * * * * * * *
14592680 TTAGAC-TACGAATGAACT-CTGTATGCATAAGTCAACACACGAAATGAGCGTACAGGCACTGAC
1 TTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14592743 CCTGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTACGTGCTATCGGTC
64 CCAGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGATC
* * *
14592808 CCGCTGCCACAACCCTCGGTCC-GGCTAGGGC
128 CTGCTGCCACAACCCTCGGTCCAGTC-AGAGC
* * *
14592839 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACAGGGCGTGCGGGTGCTCAGC
1 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCAGC
* * * * * *
14592904 CGGCCGGAGAGGTATAATGCACAAGCTGGGGATCGGCCCGATCCCTCCTGCATGCTGTTGATCAT
65 CAGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCT
14592969 GCTGCC
130 GCTGCC
14592975 CCCTAATCGT
Statistics
Matches: 228, Mismatches: 60, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
158 8 0.04
159 164 0.72
160 56 0.25
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
AGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCAGTCAGAGC
Found at i:14593859 original size:159 final size:158
Alignment explanation
Indices: 14593696--14594218 Score: 592
Period size: 159 Copynumber: 3.3 Consensus size: 158
14593686 CTGCTGTTGT
* * * * * *
14593696 AACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGATCTGGCTGGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * * *
14593761 TGAGCGTTCAGGCGCTGAGCCTACCGGAGAGGCATAATGCGCAAGACGAGGACCGACCCGATCCC
66 TGAGCGTACAGGCGCTCAGCCTGCCGGAGAGGCAGAATGCGCAAG-CGAGGATCGACCCGATCCC
* *
14593826 CCTCTGCGTGCTG-CCAGTCTCGCTACCAC
130 CCTCTGCGTGCTGTCGA-TCTCGCTGCCAC
*
14593855 AACCCTCGATCTGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCGATCTGGCTGGAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* ** * * * *
14593919 ATGGGCGGGCAGGCGCTCAG-TTGGCCGGAGAGGTAGAATGCGCAAGCTGGGGATC-AGCCCGGT
65 ATGAGCGTACAGGCGCTCAGCCT-GCCGGAGAGGCAGAATGCGCAAGC-GAGGATCGA-CCCGAT
14593982 CCCCCTCTGCGTGCTGTCGATCTCGCTGCCAC
127 CCCCCTCTGCGTGCTGTCGATCTCGCTGCCAC
** *
14594014 AACCCTCGATCCCGCTGGAGCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGATCTGGCTGGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * * *
14594079 T-AGGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCC
66 TGA-GCGTACAGGCGCTCAGCCTGCCGGAGAGGCAGAATGCGCAAGCGA-GGATCGACCCGATCC
* *
14594143 CCC-CTGCGTGCTATCGATCTTGCTGCCAC
129 CCCTCTGCGTGCTGTCGATCTCGCTGCCAC
* * * * *
14594172 AACCCTCGGTCCT-GTTTGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGAT-CTGGCTGGAGCTTAGACTGGGAATGAACTCCCTATGC
14594219 TTAGACTGGG
Statistics
Matches: 309, Mismatches: 44, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
158 66 0.21
159 240 0.78
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
AACCCTCGATCTGGCTGGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
TGAGCGTACAGGCGCTCAGCCTGCCGGAGAGGCAGAATGCGCAAGCGAGGATCGACCCGATCCCC
CTCTGCGTGCTGTCGATCTCGCTGCCAC
Found at i:14594228 original size:26 final size:26
Alignment explanation
Indices: 14594192--14594244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14594182 CCTGTTTGAT
*
14594192 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
14594218 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14594244 C
1 C
14594245 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14594419 original size:26 final size:26
Alignment explanation
Indices: 14594390--14594442 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14594380 CCGGTCCGAT
14594390 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14594416 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14594442 C
1 C
14594443 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14594774 original size:159 final size:156
Alignment explanation
Indices: 14594415--14594794 Score: 415
Period size: 155 Copynumber: 2.4 Consensus size: 156
14594405 AACTCCGTAT
* * *
14594415 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAG
** * *
14594480 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCATCACCCCTGCGTGCTGTCGATCCTA
66 CTGACCGAAGAGGCAGAATGCGCAAGCCGGGATCGACCCATCACCCCTGCGTGCTGTCGATCCCA
* **
14594545 CTGTCGTAACCCTCAGTCCAATCCGA
131 CTGCCACAACCCTCAGTCCAATCCGA
* * * * * *
14594571 TCTTAG--ATGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACAAGTGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCA
* * ** * *
14594634 GTTGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCTGGTCCCCCTCTGTGTGCTGTCGAT
65 GCTGACCGAAGAGGCAGAATGCGCAAGCC-GGGATCGACC-CATCACCC-CTGCGTGCTGTCGAT
** ** *
14594699 CCCGTTGCCACAACCCTCAGTCTGA-CTGA
127 CCCACTGCCACAACCCTCAGTCCAATCCGA
* * * *
14594728 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCA
14594793 GC
65 GC
14594795 CGACTAGAGA
Statistics
Matches: 180, Mismatches: 37, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
154 2 0.01
155 70 0.39
156 15 0.08
157 8 0.04
158 36 0.20
159 47 0.26
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAG
CTGACCGAAGAGGCAGAATGCGCAAGCCGGGATCGACCCATCACCCCTGCGTGCTGTCGATCCCA
CTGCCACAACCCTCAGTCCAATCCGA
Found at i:14594840 original size:159 final size:158
Alignment explanation
Indices: 14594415--14594842 Score: 404
Period size: 159 Copynumber: 2.7 Consensus size: 158
14594405 AACTCCGTAT
*
14594415 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTACGGGCGCTCA
* * * * * *
14594479 GCTG-GTCGGAGAGGCAGAATGCGCAA-GCCGGGATCGACCCATCACCC-CTGCGTGCTGTCGAT
65 GCTGACT-AGAGAGGCAAAATGCGCAAGGCAGGGATCGACCGATCCCCCTCTGCGTGCTGTCGAT
* * **
14594541 CCTACTGTCGTAACCCTCAGTCCAATCCGA
129 CCCACTGCCACAACCCTCAGTCCAATCCGA
* * * * * * * *
14594571 TCTTAG--ATGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACAAGTGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCA
* * * * * *
14594634 GTTGAC-CGAAGAGGCATAATGCGCAAGCCAGGGATCGACCTGGTCCCCCTCTGTGTGCTGTCGA
65 GCTGACTAG-AGAGGCAAAATGCGCAAGGCAGGGATCGACC-GATCCCCCTCTGCGTGCTGTCGA
** ** *
14594698 TCCCGTTGCCACAACCCTCAGTCTGA-CTGA
128 TCCCACTGCCACAACCCTCAGTCCAATCCGA
* *
14594728 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCA
* * ** *
14594793 GCCGACTAGAGAGGCAAAATACGCAAGGTGGGGATCGGTCCGATCCCCCT
65 GCTGACTAGAGAGGCAAAATGCGCAAGGCAGGGATC-GACCGATCCCCCT
14594843 GTATGCTGCC
Statistics
Matches: 213, Mismatches: 47, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
154 3 0.01
155 64 0.30
156 16 0.08
157 8 0.04
158 36 0.17
159 80 0.38
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCAG
CTGACTAGAGAGGCAAAATGCGCAAGGCAGGGATCGACCGATCCCCCTCTGCGTGCTGTCGATCC
CACTGCCACAACCCTCAGTCCAATCCGA
Found at i:14595298 original size:26 final size:26
Alignment explanation
Indices: 14595254--14595304 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14595244 TCGATCCGAT
* *
14595254 CTTAGACTTGGAATCAACTCTGTATC
1 CTTAGACTAGGAATCAACTCCGTATC
* *
14595280 CTTAGACTAGGGATGAACTCCGTAT
1 CTTAGACTAGGAATCAACTCCGTAT
14595305 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATC
Found at i:14597495 original size:315 final size:316
Alignment explanation
Indices: 14596827--14597506 Score: 866
Period size: 316 Copynumber: 2.2 Consensus size: 316
14596817 TCCTGTTGTT
* *
14596827 GCAACCCTCAGA-CCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATG
1 GCAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
*** * * * *
14596891 AACAAGTGTGCGGGCACTGAACCGATCGGAGAGGCATAATACGCAAGCCGAGGATCAGCTCGGTC
65 AACAAGCCAGCGGGCACTGAACCGACCAGAGAGGCATAATACGCAAGCCGAGGATCAGCCCAGTC
* * * * *
14596956 CCCCTCTACGTGCTATCGGTCCCGCTGCCATAACCCTAGATCCGATTGGGGCTTAGACATGGAAT
130 CCCCTCTACGTACTACCAGTCCCGCTGCCACAACCCTAGATCCGACTGGGGCTTAGACATGGAAT
* *
14597021 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACAGGTGCTCAACCAGTCGGAGAGACA
195 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACAGGCGCTCAACCAGTCGGAGAGACA
* * **
14597086 GAATGCGTAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTGTCGATCCTACTACC
260 GAATGCGCAAGCCAGGGATCGACCTGATCCCCCCTGCGTGCTACCGATCCTACTACC
* * * *
14597143 GTAACCCTCGGTCTGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * *
14597208 ACAAGCCAGCGGGCGCTGAGCC-AGCCATAGAGGCATAATGCGCAAGCCGGGGATC-GACCCAGT
66 ACAAGCCAGCGGGCACTGAACCGA-CCAGAGAGGCATAATACGCAAGCCGAGGATCAG-CCCAGT
* * * * * * * *
14597271 CCCCCTCTGCGTATTGCCAGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGG-T
129 CCCCCTCTACGTACTACCAGTCCCGCTGCCACAACCCTAGATCCGACTGGGGCTTAGACATGGAA
* * * * *
14597335 TGAACTCCCTATGCCTAAGCCAACCGATGAAACGGGCATACGGGCGCTCAACCGGTCGGAGAGGC
194 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACAGGCGCTCAACCAGTCGGAGAGAC
* * *
14597400 AGAATGCGCAAGCCAGGGATCGATCC-GGTCCGCCCTGCGTGCTACCGATCCTGCTACC
259 AGAATGCGCAAGCCAGGGATCGA-CCTGATCCCCCCTGCGTGCTACCGATCCTACTACC
* *
14597458 GCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14597507 TTAGACTGGG
Statistics
Matches: 309, Mismatches: 51, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
315 152 0.49
316 157 0.51
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (316 bp):
GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
ACAAGCCAGCGGGCACTGAACCGACCAGAGAGGCATAATACGCAAGCCGAGGATCAGCCCAGTCC
CCCTCTACGTACTACCAGTCCCGCTGCCACAACCCTAGATCCGACTGGGGCTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACAGGCGCTCAACCAGTCGGAGAGACAG
AATGCGCAAGCCAGGGATCGACCTGATCCCCCCTGCGTGCTACCGATCCTACTACC
Found at i:14597506 original size:158 final size:158
Alignment explanation
Indices: 14596827--14597506 Score: 526
Period size: 158 Copynumber: 4.3 Consensus size: 158
14596817 TCCTGTTGTT
* * **
14596827 GCAACCCTCAGA-CCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATG
1 GCAACCCTC-GATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATG
* * * * * * * *
14596891 AACAAGTG--TGCGGGCACTGAACC-GATCGGAGAGGCATAATACGCAAGCCGAGGATC-AGCTC
65 AA-ACGGGCATACGGGCGCTCAACCAG-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-C-C
* * * *
14596952 GGTCCCCCTCTACGTGCTATCGGTCCCGCTGCC
126 GGTCCCCCTCTGCGTGCTACCGATCCCGCTACC
** * * ** * *
14596985 ATAACCCTAGATCCGAT-TGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 GCAACCCTCGATCCGGTCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * *
14597048 GAAACGGGCTTACAGGTGCTCAACCAGTCGGAGAGACAGAATGCGTAAGCCGGGGATCGACCTGA
64 GAAACGGGCATACGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-GG
** **
14597113 TCCCCC-CTGCGTGCTGTCGATCCTACTACC
128 TCCCCCTCTGCGTGCTACCGATCCCGCTACC
* * * * * *
14597143 GTAACCCTCGGTCTGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG-
1 GCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* * * * * * ** * *
14597207 AACAAGCCA-GCGGGCGCTGAGCCAGCCATAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGT
66 AAC-GGGCATACGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCGGT
** * *
14597271 CCCCCTCTGCGTATTGCC-AGTCCCGCTGCC
129 CCCCCTCTGCGTGCTACCGA-TCCCGCTACC
* * * ** * * *
14597301 ACAACCCTCGGTCTGG-CTGGGGCTTAGAC-ATGG-TTGAACTCCCTATGCCTAAGCCAACCGAT
1 GCAACCCTCGATCCGGTCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCAT
* *
14597363 GAAACGGGCATACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGATCCGG
64 GAAACGGGCATACGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCGG
* *
14597428 TCCGCC-CTGCGTGCTACCGATCCTGCTACC
128 TCCCCCTCTGCGTGCTACCGATCCCGCTACC
*
14597458 GCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
1 GCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
14597507 TTAGACTGGG
Statistics
Matches: 399, Mismatches: 101, Indels: 44
0.73 0.19 0.08
Matches are distributed among these distances:
157 125 0.31
158 227 0.57
159 45 0.11
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
GCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
AACGGGCATACGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGGTCC
CCCTCTGCGTGCTACCGATCCCGCTACC
Found at i:14597509 original size:26 final size:26
Alignment explanation
Indices: 14597480--14597532 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14597470 CCGGTCTGAT
14597480 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* * *
14597506 CTTAGACTGGGGATGAATTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
14597532 C
1 C
14597533 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:14598250 original size:26 final size:26
Alignment explanation
Indices: 14598212--14598264 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14598202 GGCTCAAAAT
14598212 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14598238 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14598264 C
1 C
14598265 CTAAGCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14599118 original size:26 final size:26
Alignment explanation
Indices: 14599089--14599141 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14599079 TCGGTCTGAT
14599089 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
14599115 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
14599141 C
1 C
14599142 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:14599414 original size:158 final size:158
Alignment explanation
Indices: 14599114--14599613 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 158
14599104 AACTCTGTAT
* * * *
14599114 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAATCCACAAAACGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* ** * * * * * *
14599179 CCAACCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCT
66 ACAACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTACGTACTGCCGATCC
** ** * *
14599244 GGCTGCTGCAACCCTTGATCCGATTCGA
131 CACTGCCACAACCCTCGATCCGACTCGA
* * *
14599272 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGC-GGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGA
* * * *
14599335 GACGACCGGAGAGGCATAATGCACAAGCCGGGGATCAGCTCGGTCCCCCTCTACGTACTGCCGGT
65 GACAACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCC-CTACGTACTGCCGAT
* * * *
14599400 CCCACTGCCACAACCCTCGGTTCGACTGGG
129 CCCACTGCCACAACCCTCGATCCGACTCGA
* * * * ** *
14599430 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GTGTACGGGCTTTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* * * * * * * * *
14599493 ACCGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCTGATC
66 A-CAACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTACGTACTGCCGATC
* ** * *
14599558 CTACT-CCGTAACCCTC-AGTCTG-GTCCGA
130 CCACTGCCACAACCCTCGA-TCCGACT-CGA
*
14599586 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14599614 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
155 2 0.01
156 36 0.13
157 69 0.25
158 164 0.60
159 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
ACAACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTACGTACTGCCGATCC
CACTGCCACAACCCTCGATCCGACTCGA
Found at i:14599616 original size:26 final size:26
Alignment explanation
Indices: 14599587--14599639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14599577 CTGGTCCGAT
14599587 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14599613 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14599639 C
1 C
14599640 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14600217 original size:11 final size:11
Alignment explanation
Indices: 14600201--14600247 Score: 76
Period size: 11 Copynumber: 4.3 Consensus size: 11
14600191 CAGTTAGGCT
14600201 CTCCGGTGATG
1 CTCCGGTGATG
14600212 CTCCGGTGATG
1 CTCCGGTGATG
*
14600223 CTCCGATGATG
1 CTCCGGTGATG
*
14600234 CTCCGGCGATG
1 CTCCGGTGATG
14600245 CTC
1 CTC
14600248 TGACGATGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.11, C:0.32, G:0.32, T:0.26
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:14600254 original size:11 final size:11
Alignment explanation
Indices: 14600208--14600255 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
14600198 GCTCTCCGGT
**
14600208 GATGCTCCGGT
1 GATGCTCCGAC
*
14600219 GATGCTCCGAT
1 GATGCTCCGAC
*
14600230 GATGCTCCGGC
1 GATGCTCCGAC
*
14600241 GATGCTCTGAC
1 GATGCTCCGAC
14600252 GATG
1 GATG
14600256 GTGCCCCGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.15, C:0.27, G:0.33, T:0.25
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:14600255 original size:22 final size:22
Alignment explanation
Indices: 14600208--14600255 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
14600198 GCTCTCCGGT
* *
14600208 GATGCTCCGGTGATGCTCCGAT
1 GATGCTCCGGCGATGCTCCGAC
*
14600230 GATGCTCCGGCGATGCTCTGAC
1 GATGCTCCGGCGATGCTCCGAC
14600252 GATG
1 GATG
14600256 GTGCCCCGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.27, G:0.33, T:0.25
Consensus pattern (22 bp):
GATGCTCCGGCGATGCTCCGAC
Found at i:14600363 original size:26 final size:26
Alignment explanation
Indices: 14600325--14600377 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14600315 TGCTCAAAAT
**
14600325 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACAAGGAATGAACTCT-GTATG
14600351 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCTGTATG
14600377 C
1 C
14600378 CTAAACAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCTGTATG
Found at i:14600385 original size:26 final size:26
Alignment explanation
Indices: 14600334--14600385 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14600324 TCTTAGACTG
* *
14600334 GGAATGAACTTCGTATGCTTAGACAA
1 GGAATGAACTTCGTATGCCTAAACAA
14600360 GGAATGAAC-TCTGTATGCCTAAACAA
1 GGAATGAACTTC-GTATGCCTAAACAA
14600386 ACCCACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (26 bp):
GGAATGAACTTCGTATGCCTAAACAA
Found at i:14600745 original size:159 final size:156
Alignment explanation
Indices: 14600350--14600793 Score: 444
Period size: 159 Copynumber: 2.8 Consensus size: 156
14600340 AACTTCGTAT
* ** * * * *
14600350 GCTTAGACAAGGAATGAACTCTGTATGCCTAAACAAACCCACAAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC-CTTAG
* * * * *
14600415 CCGACCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCTTGGTCCCCCCCTGCGTGCTGTTGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCTGAT-CCCCCCTGCGTGCTGTCGGTC
** * *
14600480 CTGCTGTAGCAACCCTCGGTCTGGTCTGA
128 CCACTGCAACAACCCTCGGTCTGGTCTGA
* * * * * *
14600509 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCCTT-A
* ** * * * *
14600573 GTC-AGTTGAAGAGGCATAATGCGCAAGTCGAGGATCGGCCTGATCCCCCTCTACGTGCTGTCGG
64 GCCGA-CCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCTGATCCCCC-CTGCGTGCTGTCGG
*
14600637 TCCCACTGCAACAACCCTCGGTCTGG-CTGGG
126 TCCCACTGCAACAACCCTCGGTCTGGTCT-GA
* * * * *
14600668 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGACACTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC-CTTAG
*
14600733 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCG
65 CCGACCGGAGAGGCAGAATGCGCAAGC-GGGGATCGGCCTGATCCCCCCTGCGTGCTGTCG
14600794 ATCCTGCTGT
Statistics
Matches: 226, Mismatches: 50, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
158 22 0.10
159 200 0.88
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCCTTAGC
CGACCGGAGAGGCAGAATGCGCAAGCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGGTCCCA
CTGCAACAACCCTCGGTCTGGTCTGA
Found at i:14600876 original size:26 final size:26
Alignment explanation
Indices: 14600826--14600878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14600816 CCAGTTTGAT
*
14600826 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
14600852 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14600878 C
1 C
14600879 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14601691 original size:26 final size:26
Alignment explanation
Indices: 14601651--14601703 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14601641 CCGATCCGAT
*
14601651 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGAAATGAACTCCATATG
* *
14601677 CTTAGACATGAAATGAACTCCGTATG
1 CTTAGACAGGAAATGAACTCCATATG
14601703 C
1 C
14601704 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTCCATATG
Found at i:14602069 original size:158 final size:158
Alignment explanation
Indices: 14601692--14602069 Score: 413
Period size: 158 Copynumber: 2.4 Consensus size: 158
14601682 ACATGAAATG
* ** * *
14601692 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGTGCTCAACCGACTGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGAGTGCTCAGTCGACCGAAGAGGCAG
** * *
14601757 AATGCGGAAGCCAGGGACCGACCCGATCCCTCCTACATGCTGTCGATCCTGCTATCACAAACCTC
66 AATGCACAAGCCAGGGACCGACCCGATCCCTCCTACATGCTGTCAATCCTGCTACCACAAACCTC
* *
14601822 AGTCTGGTCCGATCTTAGACTGGGAATG
131 AGTCTGATCCGATCTTAGACTGGGAATA
** * * *
14601850 AACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTACGGGCGCTCAGTC-AGCC-AGAGAGGC
1 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGAGTGCTCAGTCGA-CCGA-AGAGGC
* * *** * *
14601913 AGAATGCACAAGTC-GAGGACCGACCCGATCCCTCTTGTGTGCTGTCAATCCTGCTACCGCAACC
64 AGAATGCACAAGCCAG-GGACCGACCCGATCCCTCCTACATGCTGTCAATCCTGCTACCACAAAC
* *
14601977 CT-TGTTCTGATCTGATCTTAGACTGGGAATA
128 CTCAG-TCTGATCCGATCTTAGACTGGGAATA
* * * * * *
14602008 AACTCCGTGTGCCTAAGTCAACCCATGAAACGAGCGTCCGAATGCTTAGTCGACCGAAGAGG
1 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGAGTGCTCAGTCGACCGAAGAGG
14602070 TCAATCGGAG
Statistics
Matches: 178, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 173 0.97
159 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
AACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGAGTGCTCAGTCGACCGAAGAGGCAG
AATGCACAAGCCAGGGACCGACCCGATCCCTCCTACATGCTGTCAATCCTGCTACCACAAACCTC
AGTCTGATCCGATCTTAGACTGGGAATA
Found at i:14602511 original size:191 final size:193
Alignment explanation
Indices: 14602176--14602601 Score: 556
Period size: 191 Copynumber: 2.2 Consensus size: 193
14602166 TCCACCTGGG
*
14602176 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGTGGACACTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAA-CCAT--AAAGAGCGTGCGGACACTCA
* * *
14602240 ACCGACCGGAGAGGCAGAATGCACAAGCGGGGGATCGGCCCGGTCCCCTCTACATGCTACCGATC
62 ACCGACCGGAGAGGCAGAATGCACAAGCCGGAGATCGGCCCGGTCCCCCCTACATGCTACCGATC
* *
14602305 TTGCTGCTGGTCCTGCTGTCGCAACCTTCGATCC-GATCCGATCTTAGACTGGGAATGAACTCCA
127 TTGCTACTGGTCCTGCTGTCGCAACCCTCGATCCAG-TCCGATCTTAGACTGGGAATGAACTCCA
14602369 TAT
191 TAT
* * **
14602372 GCTTAAACATGGAATGAACTCTGTATGCCTAAGCCAACC-T-ATGAGCGTGC-GAGCACTCAGTC
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCATAAAGAGCGTGCGGA-CACTCAACC
* * ** * * **
14602434 GATCGGAGAGGTAGAATGCGTAAGCCGGAGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCTTG
65 GACCGGAGAGGCAGAATGCACAAGCCGGAGATCGGCCCGGTCCCCCCTACATGCTACCGATCTTG
*
14602499 CTACTGGTCCTGCTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGTGAATGAACTCCATAT
130 CTACTGGTCCTGCTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * * *
14602563 GCTTAGACATGGAATGAACCCCGTCTACCTAAGCCAACC
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
14602602 CACGAAACGA
Statistics
Matches: 203, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
190 2 0.01
191 162 0.80
192 1 0.00
194 1 0.00
195 2 0.01
196 34 0.17
197 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (193 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCATAAAGAGCGTGCGGACACTCAACCG
ACCGGAGAGGCAGAATGCACAAGCCGGAGATCGGCCCGGTCCCCCCTACATGCTACCGATCTTGC
TACTGGTCCTGCTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:14602865 original size:159 final size:159
Alignment explanation
Indices: 14602564--14603066 Score: 436
Period size: 159 Copynumber: 3.2 Consensus size: 159
14602554 ACTCCATATG
* * * * * * *
14602564 CTTAGACAT-GGAATGAACCCCGTCTACCTAAGCCAACCCACGAAAC-GAGCATGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACTG-GCGTGCGGGCACTCA
* * ** * * *
14602627 GCC-AGTCGAAGAA-GCAAAAAGTGCAAGCCGAGCATCTGCCCGAT-CCCCTCCTGCGTGCTGTC
64 GCCGA-TCGAA-AAGGCAGAACGCACAAGCCGAGGATCAGCCCGATCCCCCT-CTACGTGCTGTC
* * *
14602689 AATCCTGCTGTTGCAACCCTCCGCCCGGTCCGAT
126 GATCCTGCTGTCGCAACCCTCCGTCCGGTCCGAT
* * * *
14602723 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-TCAATCTACGAAA-TGAGCGTGCGGGCACTGA
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCT-AACCCACGAAACTG-GCGTGCGGGCACTCA
* * * *
14602786 GCCGATCGAAAAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGAT
64 GCCGATCGAAAAGGCAGAACGCACAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGAT
* * * * * **
14602851 CCCGCTGCCACAACCCT-CGATTCGG-CTGGGG
129 CCTGCTGTCGCAACCCTCCG-TCCGGTC-CGAT
*
14602882 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACTGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACTGGCGTGCGGGCACTCAG
* * * * * *
14602946 TCGGTCGGAGAGGCAGAACGCCCAAGCCGAGGATCAGCCCGGTCCCCC-CTACGTGCTG-CTGAT
65 CCGATCGAAAAGGCAGAACGCACAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTC-GAT
* * * *
14603009 CCTGCTATCGCAACCCTCGGTCCAGTCCAAT
129 CCTGCTGTCGCAACCCTCCGTCCGGTCCGAT
14603040 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
14603067 TTAGACTAGG
Statistics
Matches: 276, Mismatches: 53, Indels: 31
0.77 0.15 0.09
Matches are distributed among these distances:
157 2 0.01
158 59 0.21
159 205 0.74
160 10 0.04
ACGTcount: A:0.24, C:0.33, G:0.25, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACTGGCGTGCGGGCACTCAGC
CGATCGAAAAGGCAGAACGCACAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCC
TGCTGTCGCAACCCTCCGTCCGGTCCGAT
Found at i:14603203 original size:183 final size:183
Alignment explanation
Indices: 14602881--14603304 Score: 532
Period size: 183 Copynumber: 2.3 Consensus size: 183
14602871 TTCGGCTGGG
* * * * * *
14602881 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACTG-GCGTGCGGGCACTC
1 GCTTAGACTA-GGGATGAACTCCGTACGCCCAAGATAACCCACGAAAC-GAGCGTGC-GGCAATC
* * * *
14602944 AGTCGGTCGGAGAGGCAGAACGCCCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTGCTGAT
63 AGCCGGCCGGAGAGGCAGAACGCCCAAGCAGAGGATCAGCCCGGTCCCCCCTACATGCTGCTGAT
14603009 CCTGCTATCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
128 CCTGCTATCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
* *
14603065 GCTTAGACTAGGGATGAACTCTGTACGCCCAAGTTAACCCACGAAACGAGCGTGCGGCAATCAGC
1 GCTTAGACTAGGGATGAACTCCGTACGCCCAAGATAACCCACGAAACGAGCGTGCGGCAATCAGC
* ** * *
14603130 CGGCCGGAGAGGCAGAATGCGTAAGCTAG-GGATTAGCCCGGTCCCCCCTGCATGCTG-TCGATC
66 CGGCCGGAGAGGCAGAACGCCCAAGC-AGAGGATCAGCCCGGTCCCCCCTACATGCTGCT-GATC
* * * * *
14603193 CTGTTATCGCAACCGTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
129 CTGCTATCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
* * * * *
14603248 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGG
1 GCTTAGACTAGGGATGAACTCCGTACGCCCAAGATAACCCACGAAACGAGCGTGCGG
14603305 ACGCTCAACC
Statistics
Matches: 208, Mismatches: 28, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
182 1 0.00
183 160 0.77
184 46 0.22
185 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (183 bp):
GCTTAGACTAGGGATGAACTCCGTACGCCCAAGATAACCCACGAAACGAGCGTGCGGCAATCAGC
CGGCCGGAGAGGCAGAACGCCCAAGCAGAGGATCAGCCCGGTCCCCCCTACATGCTGCTGATCCT
GCTATCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:14603259 original size:26 final size:26
Alignment explanation
Indices: 14603223--14603275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14603213 CCGGTCCAAT
*
14603223 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14603249 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14603275 C
1 C
14603276 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14603282 original size:27 final size:26
Alignment explanation
Indices: 14603226--14603282 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14603216 GTCCAATCTT
* *
14603226 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTA
*
14603252 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTCCGTATG-CTA
14603279 AGAC
1 AGAC
14603283 AACCCACAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTA
Found at i:14603991 original size:26 final size:26
Alignment explanation
Indices: 14603955--14604007 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14603945 GGCTCAAACT
14603955 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
14603981 CTTAGATAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
14604007 C
1 C
14604008 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:14604546 original size:26 final size:26
Alignment explanation
Indices: 14604508--14604560 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14604498 CCGATCTGAT
14604508 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
14604534 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
14604560 C
1 C
14604561 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:14605408 original size:159 final size:158
Alignment explanation
Indices: 14605062--14605410 Score: 350
Period size: 158 Copynumber: 2.2 Consensus size: 158
14605052 AACTCCATAT
* * *
14605062 GCTTAAACATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCTAACCCATGAAACGAGCGCGTGGGCGCTCAA
* * * * * * * * * *
14605127 CCTGCTGGAGAGGTAGAATGTGTAAGCCGGGGATCGGCCCGGTCGCCCTTGCGTGCTGTCGATCC
66 CCTGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGATCCCCCTTGCGTGCTGTCGATCC
* *
14605192 TGCTGCCGCAACCCTCGGTCCAATCCGA
131 TGCTACCACAACCCTCGGTCCAATCCGA
* * *
14605220 TCTTAGAC-TGGGAATGAACTC-CGTATGCCTAAG-TCAACCCATGAAACGAGTGCGTGGGCGTT
1 GCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCT-AACCCATGAAACGAGCGCGTGGGCGCT
* * * *
14605282 GAGCC-GACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACTAGATCCCCCTCTGCGTGCTGTC
63 CAACCTG-CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGATCCCCCT-TGCGTGCTGTC
* ** * *
14605346 GGT-CTCGCTACCACAACCCTCGGTCC-GGCTGGG
126 GATCCT-GCTACCACAACCCTCGGTCCAATC-CGA
14605379 GCTTAGACATGGAATGAACTCTCTATGCCTAA
1 GCTTAGACATGGAATGAACTCTCTATGCCTAA
14605411 CCCACAAAAC
Statistics
Matches: 154, Mismatches: 28, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
157 3 0.02
158 90 0.58
159 59 0.38
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCTAACCCATGAAACGAGCGCGTGGGCGCTCAA
CCTGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGATCCCCCTTGCGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCCAATCCGA
Found at i:14605584 original size:26 final size:26
Alignment explanation
Indices: 14605533--14605585 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14605523 CCGGTCTGAT
*
14605533 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
14605559 CTTAGATTAGGGATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
14605585 C
1 C
14605586 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14606602 original size:26 final size:26
Alignment explanation
Indices: 14606562--14606613 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14606552 CGTTCCGATA
14606562 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
* * * *
14606588 TTAGATTGGGGATGAATTTTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
14606614 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.37
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:14608529 original size:26 final size:26
Alignment explanation
Indices: 14608491--14608541 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14608481 TGGTCCAATC
*
14608491 TTAGACTAGGGATGAACTCCGTATGG
1 TTAGACTAGGGATGAACTCCATATGG
14608517 TTAGACT-GTGGATGAACTCCATATG
1 TTAGACTAG-GGATGAACTCCATATG
14608542 CCTGAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGGATGAACTCCATATGG
Found at i:14609000 original size:184 final size:184
Alignment explanation
Indices: 14608674--14609033 Score: 451
Period size: 184 Copynumber: 2.0 Consensus size: 184
14608664 CCGACTGGGA
* * * * *
14608674 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCAGGCGCTCAAG
* * * * * * *
14608739 CGATCTAAGAGGCAGAATGCGCAAGCTGGGGATCGATACGGTCCCCCCTACGTGCTGTCGATCCT
66 CCAGCCAAGAGGCAGAATGCACAAGCCGGGGATCGATACGGTCCCCCCTACGTACTGTAGATCCT
* * *
14608804 GTTGCTGCAACCCTCGGT-TCGGTCCAATCTTAGACTGGGAATGAACTCTATATG
131 GTTGCCGCAACCCTCGATCT-GGTCCAATCTTAGACTAGGAATGAACTCTATATG
14608858 CTTAGACATGGAATGAACAT-CGTATGCCTAAGCCAAACCACGAAACGAGCGTGCAGGCGCTC-A
1 CTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCAGGCGCTCAA
* **
14608921 GCCAGCCAGAGAGGCAGAATGCATAAGCCGGGGATCGACTTA-GG-CCCCCCTGTGTACTGTAGA
65 GCCAGCCA-AGAGGCAGAATGCACAAGCCGGGGATCGA--TACGGTCCCCCCTACGTACTGTAGA
* **
14608984 TCTTGTTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAAC
127 TCCTGTTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAAC
14609034 ACTGTACCTT
Statistics
Matches: 150, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
183 5 0.03
184 139 0.93
185 4 0.03
186 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCAGGCGCTCAAG
CCAGCCAAGAGGCAGAATGCACAAGCCGGGGATCGATACGGTCCCCCCTACGTACTGTAGATCCT
GTTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAACTCTATATG
Found at i:14609002 original size:342 final size:342
Alignment explanation
Indices: 14608332--14608949 Score: 753
Period size: 342 Copynumber: 1.8 Consensus size: 342
14608322 ACTCCGTAGG
* * *
14608332 CTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAACAAACGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTGCAGGCGCTCAAC
* * * **
14608397 CGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGTCCCCTTTAAGTGCTGCCGATCCT
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCCCCCCTAAGTGCTGCCGATCCT
* *
14608462 GCTACTGCAACCCTCAGTCTGGTCCAATCTTAGACTAGGGATGAACTCCGTATGGTTAGACTGTG
131 GCTACTGCAACCCTCAGTCTGGTCCAATCTTAGACTAGGGATGAACTCCATATGCTTAGACTGTG
* * * * * * * * * *
14608527 GATGAACTCCATATGCCTGAGTCAACCCATGAAACGAGCATAGGGGCGCTTAGCCGGTCGGAGAG
196 AATGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCATAGAGGCGCTCAGCCAGCCAGAGAG
* * * *** *
14608592 GCATAATGCATAAGTCAAGGATCAACCCAGTCTGTCGATCCCACTACCGATCCTGCTACCACAAC
261 GCAGAATGCATAAGCCAAGGATCAACCCAGCCCCCCGATCCCACTACAGATCCTGCTACCACAAC
14608657 CCTCAGTCCGACTGGGA
326 CCTCAGTCCGACTGGGA
* * * * *
14608674 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTGCAGGCGCTCAAC
* * * * *
14608739 CGATCTAAGAGGCAGAATGCGCAAGCTGGGGATC-GATACGGTCCCCCCTACGTGCTGTCGATCC
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CACGGTCCCCCCTAAGTGCTGCCGATCC
* * * *
14608803 TGTTGCTGCAACCCTCGGT-TCGGTCCAATCTTAGACT-GGGAATGAACTCTATATGCTTAGACA
130 TGCTACTGCAACCCTCAGTCT-GGTCCAATCTTAGACTAGGG-ATGAACTCCATATGCTTAGAC-
* *
14608866 TG-GAATGAACAT-CGTATGCCTAAGCCAAACCACGAAACGAGCGT-GCAGGCGCTCAGCCAGCC
192 TGTGAATGAAC-TCCATATGCCTAAGCCAAACCACGAAACGAGCATAG-AGGCGCTCAGCCAGCC
14608928 AGAGAGGCAGAATGCATAAGCC
255 AGAGAGGCAGAATGCATAAGCC
14608950 GGGGATCGAC
Statistics
Matches: 232, Mismatches: 38, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
341 6 0.03
342 223 0.96
343 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.20
Consensus pattern (342 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTGCAGGCGCTCAAC
CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCCCCCCTAAGTGCTGCCGATCCT
GCTACTGCAACCCTCAGTCTGGTCCAATCTTAGACTAGGGATGAACTCCATATGCTTAGACTGTG
AATGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCATAGAGGCGCTCAGCCAGCCAGAGAG
GCAGAATGCATAAGCCAAGGATCAACCCAGCCCCCCGATCCCACTACAGATCCTGCTACCACAAC
CCTCAGTCCGACTGGGA
Found at i:14609367 original size:26 final size:26
Alignment explanation
Indices: 14609331--14609383 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14609321 CCGGTTCAAT
14609331 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
14609357 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14609383 C
1 C
14609384 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14610090 original size:26 final size:26
Alignment explanation
Indices: 14610052--14610104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14610042 GTTTCAACAT
**
14610052 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
14610078 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
14610104 C
1 C
14610105 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:14610591 original size:26 final size:26
Alignment explanation
Indices: 14610555--14610607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14610545 CCAGTCTGAT
14610555 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14610581 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14610607 C
1 C
14610608 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14610954 original size:184 final size:184
Alignment explanation
Indices: 14610764--14611133 Score: 517
Period size: 184 Copynumber: 2.0 Consensus size: 184
14610754 TCCGGTTGGG
* * * * *
14610764 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATAAGCGTGCAGGCGCTCAG
1 GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAAGCGCTCAG
* * *
14610829 TCGGCCGGAGAGGTAGAATGCGCAAG-CTGGGGATCGGCTCGATCCCCCCTACGTGCTACCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCTCGATCCCCCCTACGTGCTACCGATC
* * * *
14610893 CTGCTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTACCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTAT
* *
14610948 GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAG
1 GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAAGCGCTCAG
* * * * ** **
14611013 CCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCTCGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCCTACGTGCTACCGATCC
*
14611078 TGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTAT
14611132 GC
1 GC
14611134 CTAAGTCAAC
Statistics
Matches: 162, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
184 161 0.99
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAAGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCCTACGTGCTACCGATCC
TGCTACCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:14611203 original size:158 final size:157
Alignment explanation
Indices: 14610960--14611448 Score: 579
Period size: 158 Copynumber: 3.1 Consensus size: 157
14610950 TTAGACATGC
* * * ** *
14610960 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAGCCGATCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAG
* * * *
14611025 GCAGAATGTGCAAGTCGGGGATTGGCTCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAAC
66 GCAGAATGTGCAAGCCGGGGATCGACTCGGT-CCCCCTGTGTGCTGTCGATCCTGCTGCCACAAC
**
14611090 CCTCGGTCCAATCCGATCTTAGACTAGG
130 CCTCGGTCCGGTCCGATCTTAGACTAGG
* * * * *
14611118 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAGCCGGTCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAG
* * **
14611183 GCATAATGTGCAAGCCGGGGATCGACTCGGTCCCTCTCGATGTGCTGTCGATCCCACTGCCACAA
66 GCAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCT-G-TGTGCTGTCGATCCTGCTGCCACAA
* ** **
14611248 CCCTAGGT-CGGTTGGGGCTTAGAC-ATGG
129 CCCTCGGTCCGGTCCGATCTTAGACTA-GG
* * * *
14611276 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAACGTGCGGGCGCTCAGTC-GACTGGAGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTC-GGAGA
* * * * *
14611340 GGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTATGTGCTGTCGATCCTGCTGCCACAAC
65 GGCAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCTGTGTGCTGTCGATCCTGCTGCCACAAC
* *
14611405 CCTCGGTCCGGTCTGATCTTAGACTGGG
130 CCTCGGTCCGGTCCGATCTTAGACTAGG
14611433 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
14611449 TTAGACATGG
Statistics
Matches: 275, Mismatches: 50, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
156 30 0.11
157 38 0.14
158 178 0.65
159 29 0.11
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAG
GCAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCTGTGTGCTGTCGATCCTGCTGCCACAACC
CTCGGTCCGGTCCGATCTTAGACTAGG
Found at i:14611451 original size:26 final size:26
Alignment explanation
Indices: 14611422--14611474 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14611412 CCGGTCTGAT
14611422 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14611448 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14611474 C
1 C
14611475 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14611695 original size:499 final size:501
Alignment explanation
Indices: 14610741--14611942 Score: 1844
Period size: 499 Copynumber: 2.4 Consensus size: 501
14610731 GGTCCTGCTA
* * *
14610741 CCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
1 CCACAACCCTAGGTACGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * *
14610806 GAAATAAGCGTGCAGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCTCGA
66 GAAATAAACGTGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGA
**
14610871 TCCCCCCTACGTGCTACCGATCCTGCTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
131 TCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
14610936 TGAACTCCGTATGCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAT
196 TGAACTCCGTATGCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAT
* * *
14611001 GCAAGCGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCTCGGTCCCCCCTGTG
261 GCAAGCGCTCAGCCGACCGGAGAGGCAGAATGGGCAAGTCGGGGATCGGCTCGGTCCCCCCTGTG
* *
14611066 TGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTA
326 TGCTGTCGATCCTGCTGCCACAACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCGTA
14611131 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAGCCGGTCGAAGAGGCATAATGTGCAA
391 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAGCCGGTCGAAGAGGCATAATGTGCAA
14611196 GCCGGGGATCGACTCGGTCCCTCTCGATGTGCTGTCGATCCCACTG
456 GCCGGGGATCGACTCGGTCCCTCTCGATGTGCTGTCGATCCCACTG
14611242 CCACAACCCTAGGT-CGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTAGGTACGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* *
14611306 GAAATAAACGTGCGGGCGCTCAGTCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGA
66 GAAATAAACGTGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGA
* ** * *
14611371 T-CCCCCTATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
131 TCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
*
14611435 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAT
196 TGAACTCCGTATGCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAT
* * * *
14611500 GCAAGCGCTCAGCCGGCCGGAGAGGTAGAATGGGTAAGTCGGGGATCGGCTTGGTCCCCCCTGTG
261 GCAAGCGCTCAGCCGACCGGAGAGGCAGAATGGGCAAGTCGGGGATCGGCTCGGTCCCCCCTGTG
* * *
14611565 TGCTGTCGATCCTGCTGCCATAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTA
326 TGCTGTCGATCCTGCTGCCACAACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCGTA
14611630 TGCCTAAGGT-AACCCACGAAATGAGCGTGCGGGTGTTGAGCCGGTCGAAGAGGCATAATGTGCA
391 TGCCTAA-GTCAACCCACGAAATGAGCGTGCGGGTGTTGAGCCGGTCGAAGAGGCATAATGTGCA
14611694 AGCCGGGGATCGACTCGGTCCCTCTCGATGTGCTGTCGATCCCACTG
455 AGCCGGGGATCGACTCGGTCCCTCTCGATGTGCTGTCGATCCCACTG
* * *
14611741 CCACAACCCTAGGTACGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCAG
1 CCACAACCCTAGGTACGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
**** * * * * * *
14611806 GAAACGGGCGTGCGGGCACTC-GATCGACCAGG-GAGGCAGAATGCACAAG-TCGAGGATTGGCC
66 GAAATAAACGTGCAGGCGCTCAG-TCGACC-GGAGAGGCAGAATGCGCAAGCT-GGGGATCGACC
* * * * * *
14611868 CGGTCCCTCCTACGTGCTACCAATCCTGCTA-CAGTC-ACCCTTGATTCGATCTGATCTTAGACT
128 CGATCCCCCCTACGTGCTACCGATCCTGCTACCA--CAACCCTCGGTCCGATCTGATCTTAGACT
*
14611931 AGGAATGAACTC
191 GGGAATGAACTC
14611943 TATATGCCTA
Statistics
Matches: 639, Mismatches: 54, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
499 362 0.57
500 207 0.32
501 69 0.11
502 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (501 bp):
CCACAACCCTAGGTACGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAATAAACGTGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGA
TCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAT
GCAAGCGCTCAGCCGACCGGAGAGGCAGAATGGGCAAGTCGGGGATCGGCTCGGTCCCCCCTGTG
TGCTGTCGATCCTGCTGCCACAACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAGCCGGTCGAAGAGGCATAATGTGCAA
GCCGGGGATCGACTCGGTCCCTCTCGATGTGCTGTCGATCCCACTG
Found at i:14612166 original size:317 final size:317
Alignment explanation
Indices: 14611447--14612203 Score: 844
Period size: 317 Copynumber: 2.4 Consensus size: 317
14611437 AACTCCGTAT
* * ** *
14611447 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * ** ** ** *
14611512 CCGGCCGGAGAGGTAGAATGGGTAAGTCGGGGATCGGCTTGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGGCCAGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTACCAATCC
* *
14611577 TGCTGCCATAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGGTAA
131 TGCTGACATAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGGTAA
* ** ** * * ** * * ** *
14611642 CCCACGAAATGAGCGTGCGGGTGTTGAGCCGGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGA
196 CCCACGAAACGAGAATGCGGACGCTCAGCCGACCGAAAAGGCATAACGCACAAGCCGGGGATAGA
* * * *
14611707 CTCGGTCCCTCTCGATGTGCTGTCGATCCCACTGCCACAACCCTAGGTACGGTTGGG
261 CCCGGTCCCTCTCGACGTGCTGTCGATCCCACTGCCACAACCCTAGGTACAGCTGGG
* * * *
14611764 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCAGGAAACGGGCGTGCGGGCA-CTC-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCA
* * * * ** * *
14611827 GATCGACCAGGGAGGCAGAATGCACAAGTCGAGGATTGGCCCGGTCCCTCCTACGTGCTACCAAT
65 G-CCGGCCAGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTACCAAT
* * * *
14611892 CCTGCT-ACAGTCACCCTTGATTCGATCTGATCTTAGACTAGGAATGAACTCTATATGCCTAA-G
129 CCTGCTGACA-TAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGG
*
14611955 TCAACCCACGAAACGAGAATGCGGACGCTCAGCCGACCGAAAAGGCATAACGCATAAGCCGGGGA
193 T-AACCCACGAAACGAGAATGCGGACGCTCAGCCGACCGAAAAGGCATAACGCACAAGCCGGGGA
** * *
14612020 TTAG-CCCGGTCCCTCTCTG-CGTGCTGTCGATCCTGCTGCTACAACCCTCA-GTCCAGCTGGG
257 -TAGACCCGGTCCCTCTC-GACGTGCTGTCGATCCCACTGCCACAACCCT-AGGTACAGCTGGG
* *
14612081 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * *
14612146 CCGGCCAGAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGATGCCCCCCTACGTGCT
66 CCGGCCAGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCCGGT-CCCCCCTACGTGCT
14612204 GCCGATCCAG
Statistics
Matches: 358, Mismatches: 72, Indels: 19
0.80 0.16 0.04
Matches are distributed among these distances:
316 6 0.02
317 334 0.93
318 18 0.05
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCGGCCAGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTACCAATCC
TGCTGACATAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGGTAA
CCCACGAAACGAGAATGCGGACGCTCAGCCGACCGAAAAGGCATAACGCACAAGCCGGGGATAGA
CCCGGTCCCTCTCGACGTGCTGTCGATCCCACTGCCACAACCCTAGGTACAGCTGGG
Found at i:14612217 original size:159 final size:156
Alignment explanation
Indices: 14611447--14612218 Score: 524
Period size: 159 Copynumber: 4.9 Consensus size: 156
14611437 AACTCCGTAT
* * ** *
14611447 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * ** **
14611512 CCGGCCGGAGAGGTAGAATGGGTAAGTCGGGGATCGGCTTGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGGCC-GAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
* * * *
14611577 TGCTGCCATAACCCTC-GATCCGATCTGA
130 AGCTGCTACAACCCTCAG-TCC-AGCTGA
* ** * * * *
14611605 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGGTAACCCACGAAATGAGCGTGCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* * * * * * * *
14611669 GCCGGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGACTCGGTCCCTCTCGATGTGCTGTCGAT
65 GCCGGCCG-AGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCC-CCCTACGTGCTGTCGAT
* * * * *
14611734 CCCA-CTGCCACAACCCT-AGGTACGGTTGGG
128 -CCAGCTGCTACAACCCTCA-GTCCAGCT-GA
* * * *
14611764 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCAGGAAACGGGCGTGCGGGCA-CTC-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCA
* * * ** * * * * * ** *
14611827 GATCGACCAGGGAGGCAGAATGCACAAGTCGAGGATTGGCCCGGTCCCTCCTACGTGCTACCAAT
65 G-CCGGCC-GAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGAT
* * * *
14611892 -C--CTGCTACAGTCACCCTTGATTCGATCTGA
128 CCAGCTGCTACA---ACCC-TCAGTCCAGCTGA
* ** * **
14611922 TCTTAGAC-TAGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGAATGC-GGACGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGA-GCTC
* * * * * * * *
14611985 AGCCGACCGAAAAGGCATAACGCATAAGCCGGGGAT-TAGCCCGGTCCCTCTCTGCGTGCTGTCG
64 AGCCGGCCG-AGAGGCAGAATGCGTAAGCCGGGGATCGA-CCCGGTCCC-CCCTACGTGCTGTCG
* *
14612049 ATCCTGCTGCTACAACCCTCAGTCCAGCTGGG
126 ATCCAGCTGCTACAACCCTCAGTCCAGCT-GA
* *
14612081 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * *
14612146 CCGGCCAGAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGATGCCCCCCTACGTGCTGCCGATC
66 CCGGCC-GAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGT-CCCCCCTACGTGCTGTCGATC
14612211 CAGCTGCT
129 CAGCTGCT
14612219 GGCCCTACTG
Statistics
Matches: 464, Mismatches: 118, Indels: 63
0.72 0.18 0.10
Matches are distributed among these distances:
155 7 0.02
156 2 0.00
157 6 0.01
158 192 0.41
159 233 0.50
160 16 0.03
162 8 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCGGCCGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCA
GCTGCTACAACCCTCAGTCCAGCTGA
Found at i:14613165 original size:26 final size:26
Alignment explanation
Indices: 14613114--14613166 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14613104 GGCTCAAAAT
* *
14613114 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAAGGAACTCCATATG
*
14613140 CTTAGACAT-GGAAGGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCATATG
14613166 C
1 C
14613167 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:14613678 original size:26 final size:26
Alignment explanation
Indices: 14613627--14613679 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14613617 CCGATCTGAT
*
14613627 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCACATATG
* *
14613653 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACCACATATG
14613679 C
1 C
14613680 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCACATATG
Found at i:14613909 original size:159 final size:155
Alignment explanation
Indices: 14613723--14614155 Score: 401
Period size: 159 Copynumber: 2.7 Consensus size: 155
14613713 TCTACCGGTT
** *
14613723 GGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGATCCCCCTTGCATGCTGTCGATCCTGCTA
1 GGAGAGGCAGAATGCGTAAGCC-GGGATTGGCCC-GATCCCCCTTGCATGCTG-CGATCCTGCTA
* * * * *
14613788 TCGCAACCCTCAGTCCGATCTGATTTTAGACTGGGAATGAACTCCGC-ATGCCTAAGTCAACCCA
63 CCGCAACCCTCAGTCCGATCAGATCTTAGACT-GAAATGAACTCC-CTATGCCTAAGCCAACCCA
*
14613852 CGAAAC-GAGCG-GTCGGGCACTTAGCCTA-CC
126 CGAAACGGA-CGTG-CGGACACTTAGCC-AGCC
* * * *
14613882 GGAGAGGCATAATGCGTAAGCCAGGGATTGG-CCTAGTCCCCCTTTGCATGCTGCCAGTCCCGCT
1 GGAGAGGCAGAATGCGTAAGCC-GGGATTGGCCCGA-TCCCCC-TTGCATGCTGCGA-TCCTGCT
* * * * ** *
14613946 GCCACAACCCTCAGTTCGGGT-AGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCC
62 ACCGCAACCCTCAG-TCCGATCAGATCTTAGAC-TGAAATGAACTCCCTATGCCTAAGCCAACCC
* ** *
14614010 ATGAAACGGACGTGCGGACGTTTAGTCAGCC
125 ACGAAACGGACGTGCGGACACTTAGCCAGCC
* * *
14614041 GGAGAGGTAGAATGCGTAAGCCGAGGATTGGCCCGATCCCTCTTGCGTGCTGCCGATCCTGCTAC
1 GGAGAGGCAGAATGCGTAAGCCG-GGATTGGCCCGATCCCCCTTGCATGCTG-CGATCCTGCTAC
* * *
14614106 CGCAACCCTTAGTCCGATCCGATCTTAGACTAGAAATGAACTCCATATGC
64 CGCAACCCTCAGTCCGATCAGATCTTAGACT-GAAATGAACTCCCTATGC
14614156 TTACTCTGGG
Statistics
Matches: 219, Mismatches: 41, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
157 6 0.03
158 63 0.29
159 139 0.63
160 11 0.05
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
GGAGAGGCAGAATGCGTAAGCCGGGATTGGCCCGATCCCCCTTGCATGCTGCGATCCTGCTACCG
CAACCCTCAGTCCGATCAGATCTTAGACTGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGACGTGCGGACACTTAGCCAGCC
Found at i:14615281 original size:159 final size:158
Alignment explanation
Indices: 14614887--14615312 Score: 410
Period size: 159 Copynumber: 2.7 Consensus size: 158
14614877 ACACCGTAAT
* **
14614887 GCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGCTCAAT
1 GCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAT
* * * * * *
14614952 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GACCCGGTTCCGCCCTGTGTGCTGTCGATC
66 CGATCGGAGAGGCAAAATACGCAAGCCGGGGATCAG-CCCGATCCCGCCCTGTGTGCTGTCGATC
* *
14615016 CTGCTACCGCAACCCTCAGTCTGATCCGA
130 CCGCTACCACAACCCTCAGTCTGATCCGA
* * * * * **
14615045 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGCCGCTGG
1 GCTTAGACAT-GGAATGAAC-TCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
14615109 GTC-AGTCGAAGAGGCATAATACGCAAGCCGGGGATCAGCTCGATCCCTCTCTGTGTGCTGTTGG
64 ATCGA-TCGGAGAGGCAAAATACGCAAGCCGGGGATCAGCCCGATCCCGCCCTGTGTGCTGTCGA
* ** * * *
14615173 TCCCGCTACCACAATCCTTGGTCTG-GCTGGG
128 TCCCGCTACCACAACCCTCAGTCTGATC-CGA
* * *
14615204 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * *
14615269 CCGATCGGAGAGGTAAAATTCGTAAGCCTGGGATCAGCCCGATC
65 TCGATCGGAGAGGCAAAATACGCAAGCCGGGGATCAGCCCGATC
14615313 GACACTGCGT
Statistics
Matches: 210, Mismatches: 50, Indels: 15
0.76 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 19 0.09
159 187 0.89
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAT
CGATCGGAGAGGCAAAATACGCAAGCCGGGGATCAGCCCGATCCCGCCCTGTGTGCTGTCGATCC
CGCTACCACAACCCTCAGTCTGATCCGA
Found at i:14615766 original size:26 final size:26
Alignment explanation
Indices: 14615728--14615780 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14615718 CCGATCTGAT
14615728 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
* *
14615754 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACCCCATATG
14615780 C
1 C
14615781 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:14616260 original size:26 final size:26
Alignment explanation
Indices: 14616231--14616283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14616221 CAATTCTGAT
*
14616231 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14616257 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14616283 C
1 C
14616284 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14616993 original size:26 final size:26
Alignment explanation
Indices: 14616964--14617033 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
14616954 TCTTAGACTG
*
14616964 GGAATGAACTTCGTATGCTTAGAAAT
1 GGAATGAACTCCGTATGCTTAGAAAT
* *
14616990 GGAATGAACTCCATATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGAAAT
14617016 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14617034 CTAAGCCAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGAAAT
Found at i:14617813 original size:26 final size:26
Alignment explanation
Indices: 14617775--14617827 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14617765 CTGATCCGAT
14617775 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14617801 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
14617827 C
1 C
14617828 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14617833 original size:183 final size:184
Alignment explanation
Indices: 14617617--14617979 Score: 482
Period size: 183 Copynumber: 2.0 Consensus size: 184
14617607 TCCGGCTGGG
* *
14617617 GCTTAGACATGGAATGAACTTCGTATACCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
** * * * *
14617682 CCGGTC-AGAGAGGTAGAATGCGTAAGCCGTGGATCGGCTC-GAT-CCCCCTACATGCTATTGAT
66 CCCATCGA-AGAGGTAGAATGCATAAGCCGGGGACCGGC-CAGATCCCCCCTACATGCTATCGAT
*
14617744 -CTAGCTGCCCCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCATAT
129 CCTA-CTGCCCCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTCCATAT
* * *
14617800 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * * *
14617865 CCCATCGAAGAGGTAGAATGCATAAGCCGGGGACCGGCCAGGTCCCCCCCTGCGTGCTGTCGATC
66 CCCATCGAAGAGGTAGAATGCATAAGCCGGGGACCGGCCAGAT-CCCCCCTACATGCTATCGATC
* * * *
14617930 CTATTGTCGCAACCCTTGGTCTGATCCAATCTTAGACTAGGAATGAACTC
130 CTACTGCCCCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTC
14617980 TGTATGCCTA
Statistics
Matches: 155, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
182 1 0.01
183 93 0.60
184 1 0.01
185 57 0.37
186 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
CCCATCGAAGAGGTAGAATGCATAAGCCGGGGACCGGCCAGATCCCCCCTACATGCTATCGATCC
TACTGCCCCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTCCATAT
Found at i:14618229 original size:159 final size:157
Alignment explanation
Indices: 14617800--14618294 Score: 415
Period size: 159 Copynumber: 3.1 Consensus size: 157
14617790 AACTCCATAT
**
14617800 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
14617865 CCCATCGAAGAGGTAGAATGCATAAGCCGGGGACCGGCCAGGTCCCCCCCTGCGTGCTGTCGATC
66 CCAATCG-AGAGGTAGAATGCACAAGCCGGGGATCGGCC-GATCCCCCTCTGCGTGCTGTCGATC
* * * * *
14617930 CTATTGTCGCAACCCTTGGTCTGATCCAA
129 CCATTGCCACAACCCTCGGTCCGATCCAA
* ** * * * * *
14617959 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * * * *
14618023 GCCAACCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCTGCTTGCTGTCTGA
65 GCCAATC-GAGAGGTAGAATGCACAAGCCGGGGATCGGCCGA-TCCCCCTCTGCGTGCTGTC-GA
* * * ****
14618088 -CCCGTTGCCATAACCCTCGGTCCGGTTGGG
127 TCCCATTGCCACAACCCTCGGTCCGATCCAA
* * * *
14618118 GCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
*** *
14618183 CGGGTCAGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGAT-CCCC-CTGCATGCTGTCGATC
66 CCAATC-GAGAGGTAGAATGCACAAGCCGGGGATCGGC-CGATCCCCCTCTGCGTGCTGTCGATC
* * * * * *
14618246 CTATTGCCGCAGCCCTCGGTCCGGTTCGA
129 CCATTGCCACAACCCTCGGTCCGATCCAA
*
14618275 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
14618295 ACGTATGCTT
Statistics
Matches: 260, Mismatches: 68, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
156 3 0.01
157 50 0.19
158 5 0.02
159 196 0.75
160 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCAATCGAGAGGTAGAATGCACAAGCCGGGGATCGGCCGATCCCCCTCTGCGTGCTGTCGATCCC
ATTGCCACAACCCTCGGTCCGATCCAA
Found at i:14618312 original size:26 final size:26
Alignment explanation
Indices: 14618276--14618325 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14618266 CCGGTTCGAT
14618276 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
14618302 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTACGTA
14618326 GGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14618785 original size:170 final size:170
Alignment explanation
Indices: 14618486--14618852 Score: 373
Period size: 170 Copynumber: 2.2 Consensus size: 170
14618476 CCAACTGGGG
* * * * *
14618486 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAGCCACGGAATGAGCATGCGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCCCAG
* * * *
14618550 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTTGCATGCTACCGATCC
65 CCGACCGAAGAGGCAAAATACACAAGCCGGGGATCGACCCAGTCCCCCTCGCATGCTACCGATCC
* * * * *
14618615 TGCTACTAGTCCTACTATCGAAACCCTCGGTCTGATCTGAT
130 TACTACTAGTCCTACTACCCAAACCCTCAGTCCGATCTGAT
* * * *
14618656 GTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAATGCCCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCCCAGC
* * * *** **
14618721 CGATCGGAGAGGCAAAATACATAAGCCGGGGATC-AGCTTGGTCCCCTCTACG-A-GCTGTCGAT
66 CGACCGAAGAGGCAAAATACACAAGCCGGGGATCGA-CCCAGTCCCC-CT-CGCATGCTACCGAT
* * ** *
14618783 CCTACTGCTGGTCCTGTTACCCCAACCCTCAGTCCGATCTGAT
128 CCTACTACTAGTCCTACTACCCAAACCCTCAGTCCGATCTGAT
* *
14618826 CTTAGACTGGGATTGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14618853 TTACATTGGG
Statistics
Matches: 158, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
169 2 0.01
170 152 0.96
171 3 0.02
172 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCCCAGC
CGACCGAAGAGGCAAAATACACAAGCCGGGGATCGACCCAGTCCCCCTCGCATGCTACCGATCCT
ACTACTAGTCCTACTACCCAAACCCTCAGTCCGATCTGAT
Found at i:14618855 original size:26 final size:26
Alignment explanation
Indices: 14618826--14618878 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14618816 CCGATCTGAT
*
14618826 CTTAGACT-GGGATTGAACTCTGTATG
1 CTTACACTGGGGA-TGAACTCTGTATG
*
14618852 CTTACATTGGGGATGAACTCTGTATG
1 CTTACACTGGGGATGAACTCTGTATG
14618878 C
1 C
14618879 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTACACTGGGGATGAACTCTGTATG
Found at i:14620822 original size:157 final size:158
Alignment explanation
Indices: 14620437--14620859 Score: 421
Period size: 157 Copynumber: 2.7 Consensus size: 158
14620427 AGTCTGGTCC
* * *
14620437 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTG
1 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTG
* * **
14620502 AG-CTGCTCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCATTTACGTGCTGTCA
66 AGTC-GATCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCA-CTACGTGCTACCA
* ***
14620566 GTCTCGCTGCCACAACCCTCGGTTTGACTG
129 GTCTCGCTGCCACAACCCTCGATCCAACTG
** * * * * * * * *
14620596 GGGCTTAGACAT-GGAATGAACTCCCTATTCCTAAGCAAACCCATGAAACGGGCGAGCGGGTGCT
1 GATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCT
* * ** *
14620660 CAGTCGATC-GAGGAGGCAGAATGCGTAAG-CTGAGGATCGGCCCGATCCCC-CTACGTGCTACC
65 GAGTCGATCGGA-GAGGCATAATGCACAAGCCAG-GGATCGGCCCGATCCCCACTACGTGCTACC
* *
14620722 -GATC-CTGCTGTCGCAACCCTCGATCCAATCT-
128 AG-TCTC-GCTGCCACAACCCTCGATCCAA-CTG
* * *
14620753 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGTGTGCGGACACTG
1 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTG
* *
14620818 AGTCGATCGGAGAGGCATAATGCACAAGCTAGGGATTGGCCC
66 AGTCGATCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCC
14620860 CCTCATCTCC
Statistics
Matches: 207, Mismatches: 47, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 107 0.52
158 9 0.04
159 86 0.42
160 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTG
AGTCGATCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCACTACGTGCTACCAGT
CTCGCTGCCACAACCCTCGATCCAACTG
Found at i:14621037 original size:26 final size:26
Alignment explanation
Indices: 14621007--14621059 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14620997 CCGGTCCGAT
*
14621007 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
* *
14621033 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
14621059 C
1 C
14621060 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:14621655 original size:11 final size:11
Alignment explanation
Indices: 14621639--14621669 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
14621629 CGGTTAGGCT
14621639 CTCCGACGACA
1 CTCCGACGACA
14621650 CTCCGACGACA
1 CTCCGACGACA
14621661 CTCCGACGA
1 CTCCGACGA
14621670 TGGTGCCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.45, G:0.19, T:0.10
Consensus pattern (11 bp):
CTCCGACGACA
Found at i:14622120 original size:26 final size:26
Alignment explanation
Indices: 14622084--14622136 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14622074 CCAGTTCAAT
14622084 CTTACATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
* *
14622110 CTTAGATTGGGGATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
14622136 C
1 C
14622137 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACATTGGGAATGAACTCCGTATG
Found at i:14623073 original size:159 final size:159
Alignment explanation
Indices: 14622808--14623103 Score: 432
Period size: 159 Copynumber: 1.9 Consensus size: 159
14622798 GATCCCGCTG
* * *
14622808 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCAC
* * * **
14622873 GAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGTAGAATACACAAG-TCGGGGATCGGCCCG
66 GAAACGAGCATGCGGCCGCTCAGCCGATCGAAGAGGCAGAATACACAAGCT-GGGGATCCACCCG
14622937 GTCCCCCTCTGCGCGCTGTCGGTCTCACTA
130 GTCCCCCTCTGCGCGCTGTCGGTCTCACTA
**
14622967 CCACAACTTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCAC
* * * * * *
14623032 GAAACGGGCATGCGGCCGGTTAGCCGATCGAAGTGGCAGAATGCGCAAGCTGGGGATCCACCCGG
66 GAAACGAGCATGCGGCCGCTCAGCCGATCGAAGAGGCAGAATACACAAGCTGGGGATCCACCCGG
14623097 TCCCCCT
131 TCCCCCT
14623104 TGCATGCTGC
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
159 119 0.99
160 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (159 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCAC
GAAACGAGCATGCGGCCGCTCAGCCGATCGAAGAGGCAGAATACACAAGCTGGGGATCCACCCGG
TCCCCCTCTGCGCGCTGTCGGTCTCACTA
Found at i:14623192 original size:26 final size:26
Alignment explanation
Indices: 14623149--14623201 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14623139 CCGATTTGAT
14623149 CTTAGACTGGGAAGGAACTCCATATG
1 CTTAGACTGGGAAGGAACTCCATATG
* *
14623175 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAAGGAACTCCATATG
14623201 C
1 C
14623202 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:14623864 original size:159 final size:158
Alignment explanation
Indices: 14623679--14624278 Score: 575
Period size: 159 Copynumber: 3.8 Consensus size: 158
14623669 CCGATTCGAT
*** * * *
14623679 CTTAGACTGAGAATGAACTTTGTATGCCTCAGTCATCCCACGAAACGAGCGTGCGGGCGCTAAGC
1 CTTAGACTG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * * *
14623744 CGACCGAAAAGGCATAAT-CTACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATAGGTC
65 CGACCGGAGAGGCAGAATGC-ACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTATAGGTC
*
14623808 CCGCTGCCATAACCCTCGGTCTGACTGGGG
129 CCGCTGCCACAACCCTCGGTCTGACTGGGG
* *
14623838 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* ** * * * * * * *
14623903 TTG-CCGGAGAGGTGGAATGCACAAGCTGGGGACCGACCTGGTCCCCCTCTACGTGCTGTCA-AT
65 -CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTAT-AGGT
** * *** **
14623966 CTTGTTGTTGCAACCCTCGGTCTGATCT-GAT
128 CCCGCTGCCACAACCCTCGGTCTGA-CTGGGG
* * * *
14623997 CTTAGACTAGCAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAAGC
1 CTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * ** * * * *
14624062 CAGTA--GGAGGGGCATAATGCGTAAGCTGAGGATCGGCCCGATCCCCCTCTATGTGCTATCGGT
65 C-G-ACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTATAGGT
* *
14624125 CCCGCTGCCACAACCCTCAGTCCGACTGGGG
128 CCCGCTGCCACAACCCTCGGTCTGACTGGGG
* * * *
14624156 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * *
14624221 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCTGCCCGGTCCCCC-CTACGTGCTAT
65 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTAT
14624279 CGATCCTACT
Statistics
Matches: 346, Mismatches: 81, Indels: 29
0.76 0.18 0.06
Matches are distributed among these distances:
158 14 0.04
159 324 0.94
160 8 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCC
GACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTATAGGTCCC
GCTGCCACAACCCTCGGTCTGACTGGGG
Found at i:14624102 original size:318 final size:313
Alignment explanation
Indices: 14623520--14624340 Score: 986
Period size: 318 Copynumber: 2.6 Consensus size: 313
14623510 AACTCCATAT
* * * ** * *
14623520 GCTTATACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAACGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* ** * * * * * *
14623585 CAGGTTGAAGAGGTAGAATGTGCAAGCTGGGGACCGTCTCGATCCCCCCTGCGTGCTATTGATCC
66 CTGGCCGGAGAGGTAGAATGCGCAAGCTGGGGACCGCCT-GGTCCCCCCTACGTGCTATCGATCC
* ** *
14623650 TGCTGTTGTAACCCTCGATCCGAT-TCGATCTTAGACTGAGAATGAACTTTGTATGCCTCAGTCA
130 TGCTGTTGTAACCCTCGGTCCGATCT-GATCTTAGACT-AGAATGAACTCCGTATGCCTAAGTCA
*
14623714 TCCCACGAAACGAGCGTGCGGGCGCTAAGCCGACCGAAAAGGCATAATCTACAAGCCAGGGATCG
193 ACCCACGAAACGAGCGTGCGGGCGCTAAGCCGA-CGAAAAGGCATAATCTA-AAGCCAGGGATCG
* * * *
14623779 GCCCGATCCCCCTCTGCGTGCTATAGGTCCCGCTGCCATAACCCTCGGTCTGACTGGG
256 GCCCGATCCCCCTCTACGTGCTATAGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
*
14623837 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * *
14623902 CTTGCCGGAGAGGTGGAATGCACAAGCTGGGGACCGACCTGGTCCCCCTCTACGTGCTGTCAATC
66 CTGGCCGGAGAGGTAGAATGCGCAAGCTGGGGACCG-CCTGGTCCCCC-CTACGTGCTATCGATC
* * * * *
14623967 TTGTTGTTGCAACCCTCGGTCTGATCTGATCTTAGACTAGCAATGAACTCCATATGCCTAAGTCA
129 CTGCTGTTGTAACCCTCGGTCCGATCTGATCTTAGACTAG-AATGAACTCCGTATGCCTAAGTCA
* * ** *
14624032 ACCCACGAAATGAGCGTGCGGGCGCTAAGCCAGTA-GGAGGGGCATAATGCGT-AAG-CTGAGGA
193 ACCCACGAAACGAGCGTGCGGGCGCTAAGCC-G-ACGAAAAGGCATAAT-C-TAAAGCCAG-GGA
* *
14624094 TCGGCCCGATCCCCCTCTATGTGCTATCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
253 TCGGCCCGATCCCCCTCTACGTGCTATAGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
14624155 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * *
14624220 -TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCTGCCCGGTCCCCCCTACGTGCTATCGATC
66 CT-GGCCGGAGAGGTAGAATGCGCAAGCTGGGGA-CCGCCTGGTCCCCCCTACGTGCTATCGATC
* ** * * *
14624284 CTACTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
129 CTGCTGTTGTAACCCTCGGTCCGATCTGATCTTAGACT-AGAATGAACTCCGTATGC
14624341 TTAGACTAGG
Statistics
Matches: 428, Mismatches: 64, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
317 155 0.36
318 266 0.62
319 5 0.01
320 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (313 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CTGGCCGGAGAGGTAGAATGCGCAAGCTGGGGACCGCCTGGTCCCCCCTACGTGCTATCGATCCT
GCTGTTGTAACCCTCGGTCCGATCTGATCTTAGACTAGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTAAGCCGACGAAAAGGCATAATCTAAAGCCAGGGATCGGCCCG
ATCCCCCTCTACGTGCTATAGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:14624343 original size:26 final size:26
Alignment explanation
Indices: 14624314--14624366 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14624304 CCGGTCTGAT
*
14624314 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
14624340 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
14624366 C
1 C
14624367 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Done.