Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 87 of 138
Found at i:14625074 original size:26 final size:26
Alignment explanation
Indices: 14625037--14625088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14625027 GCTCAAAATA
14625037 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14625063 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
14625089 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14625562 original size:25 final size:26
Alignment explanation
Indices: 14625534--14625585 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14625524 CTGGTCCAAT
14625534 CTTAGACT-GGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
14625559 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
14625585 C
1 C
14625586 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:14626011 original size:26 final size:26
Alignment explanation
Indices: 14625973--14626022 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14625963 ATCTGATCTC
*
14625973 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
14625999 AGACTGGGGATGAACTCCATATGC
1 AGACTGGGAATGAACTCCATATGC
14626023 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:14626732 original size:26 final size:26
Alignment explanation
Indices: 14626694--14626746 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14626684 GGCTCAAAAT
14626694 CTTAGACTGGGAATGAAATACGTATG
1 CTTAGACTGGGAATGAAATACGTATG
* *
14626720 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATACGTATG
14626746 C
1 C
14626747 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATACGTATG
Found at i:14627196 original size:156 final size:156
Alignment explanation
Indices: 14626720--14627218 Score: 538
Period size: 156 Copynumber: 3.2 Consensus size: 156
14626710 AATACGTATG
* * *
14626720 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGG-GCGCTCA
* * * *
14626784 GTCGGTCGGAGAGGCAAAATGCACAAGCCAGGGATCGGCTCAGTCCCCCTACGTGCTATCGATCC
64 GTCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGC-CCGTCCCCCTACGTGCTGTCGATCC
* *
14626849 TGCTACCGCAACCCTTGGTCCGG-TCGAT
128 TGCTACCACAACCCTCGGTCCGGTTCGAT
* * * * * * *
14626877 CTTAGACTGGGATTGAACTCCGTATGCATAAGTCAACCCATGAAAAGAGCGTACGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGT
* * * * *
14626942 CGGCCGAAGAGGCATAATGCGCACGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGATCC
66 CGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCG-T-CCCC-CTACGTGCTGTCGATCC
* * * **
14627007 CGCTACCACAACCCTCGGTCCGATTGGGG
128 TGCTACCACAACCCTCGGTCCGGTTCGAT
* * *
14627036 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA-GAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
* * * * * *
14627099 TCGGCCGGAGAGGCAGAATGCGTAAGCCTGGGATCGACCCGTCCTCCCTGCGTGCTGCCGATCCT
65 TCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGTCC-CCCTACGTGCTGTCGATCCT
* * * *
14627164 ACTGCCAAAACCCTCGGTCCGGTTCAAT
129 GCTACCACAACCCTCGGTCCGGTTCGAT
*
14627192 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14627219 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 55, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
155 3 0.01
156 98 0.35
157 55 0.20
158 86 0.31
159 36 0.13
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGT
CGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGTCCCCCTACGTGCTGTCGATCCTGC
TACCACAACCCTCGGTCCGGTTCGAT
Found at i:14627228 original size:26 final size:26
Alignment explanation
Indices: 14627192--14627244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14627182 CCGGTTCAAT
14627192 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14627218 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14627244 C
1 C
14627245 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14628621 original size:26 final size:26
Alignment explanation
Indices: 14628585--14628637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14628575 CCAGTCTGAT
14628585 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* **
14628611 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14628637 C
1 C
14628638 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:14630026 original size:159 final size:159
Alignment explanation
Indices: 14629723--14630107 Score: 377
Period size: 159 Copynumber: 2.4 Consensus size: 159
14629713 GTGGCTCAAA
**
14629723 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCAGAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * * *
14629788 ACTGGCCGGAGAAGCAGAATGCGCAAGCCAGGGATTGATCCAGTCCCCCCCTGTGTCCTATCGAT
66 ACCAGCCGAAGAAGCACAATGCGCAAGCCAGGGATTCAACCAGTCCCCCCCTATGTCCTATCGAT
** *
14629853 CCTGCTGCTGCAACCCTCGATCCGGTCCG
131 CCCACTGCTACAACCCTCGATCCGGTCCG
* * * *
14629882 ATCTTAGACTGGGAATGAACTCTGTATGCAGAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCAGAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14629947 CCCAGCCGAAGAGGCACAATGCGCAAGTC-GAGGA-TCAACCTGGTCCCTCTCTATGTGCTATCG
66 ACCAGCCGAAGAAGCACAATGCGCAAGCCAG-GGATTCAACC-AGTCCCCCCCTATGTCCTATCG
* * * * *
14630010 GTCCCACTGTTACAACCCTCGGTCC-GACTGG
129 ATCCCACTGCTACAACCCTCGATCCGGTC-CG
** * ** *
14630041 GGCTCAGACAT-GGAATGAACTTCC-TATGCCTAA-CCAACCCACGAAACGTGCGTGCGGGCGCT
1 ATCTTAGAC-TGGGAATGAAC-TCCGTATGCAGAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
14630103 CAACC
64 CAACC
14630108 GATTGGAGAG
Statistics
Matches: 182, Mismatches: 39, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
158 36 0.20
159 143 0.79
160 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCAGAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
ACCAGCCGAAGAAGCACAATGCGCAAGCCAGGGATTCAACCAGTCCCCCCCTATGTCCTATCGAT
CCCACTGCTACAACCCTCGATCCGGTCCG
Found at i:14630236 original size:26 final size:26
Alignment explanation
Indices: 14630200--14630252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14630190 CTGGTCCGAT
*
14630200 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14630226 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14630252 C
1 C
14630253 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14630582 original size:355 final size:354
Alignment explanation
Indices: 14630021--14630666 Score: 892
Period size: 355 Copynumber: 1.8 Consensus size: 354
14630011 TCCCACTGTT
* * *
14630021 ACAACCCTCGGTCCGACTGGGGCTCAGACATGGAATGAACTTCCTATGCCTAACCAACCCACGAA
1 ACAAACCTCAGTCCGACTGGGGCTCAGACATGGAATAAACTTCCTATGCCTAACCAACCCACGAA
* * * * * *
14630086 ACGTGCGTGCGGGCGCTCAACCGATTGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCC
66 ACGAGCGTGCGGGCACTCAACCGATCGGAGAGGCAAAATGCACAAGCTGGGGATCGGCCCGATCC
* * *
14630151 CCCCTGTGTGCTGTCGATCCTGCTGCCAAAACCGTCAGTCTGGTCCGATCTTAGACTGGGAATGA
131 CCCCTGCGTGCTGTCGATCCTGCTGACAAAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGA
* * * *
14630216 ACTCGGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTAC
196 ACTCGGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC
*
14630280 GGGCGCTCAGCCGACCGGAGAGGCATAATGCATAAGCCGAGGATTAGCCCGATCCCTTTTTACGT
260 GGGCGCTCAGCCGACCGGAGAGGCAGAATGCATAAGCCGAGGATTAGCCCGATCCCTTTTTACGT
14630345 GCTGTCGATCCCACTGTCGATCCTGCTACC
325 GCTGTCGATCCCACTGTCGATCCTGCTACC
* * *
14630375 ACAAACCTCAGTCCGGCTGGGGCTTAGACATGGAATAAAC-TCTGTATGCCTAATCCAACCCAC-
1 ACAAACCTCAGTCCGACTGGGGCTCAGACATGGAATAAACTTC-CTATGCCTAA-CCAACCCACG
* * *
14630438 AAACGAGCGTGTGGGCACTCAGCCGATCGGAGAGGCAAAATGCATAAG-TAGGGGATCGGCCC-A
64 AAACGAGCGTGCGGGCACTCAACCGATCGGAGAGGCAAAATGCACAAGCT-GGGGATCGGCCCGA
* *
14630501 GTCCCCCCATGCGTGCTGTCGATCCTGCT-ACAGCAACCCTC-GATCTGGTCTGATCTTAGACTG
128 -TCCCCCC-TGCGTGCTGTCGATCCTGCTGACA-AAACCCTCAG-TCTGGTCCGATCTTAGACTG
* *
14630564 GGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGA
189 GGAATGAACTCGGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * **
14630629 GTGTGCGGGCGCTCAGCCGACCGGTTAGGCAGAATGCA
254 GCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCA
14630667 CAATCCAGGG
Statistics
Matches: 253, Mismatches: 31, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
353 4 0.02
354 105 0.42
355 143 0.57
356 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (354 bp):
ACAAACCTCAGTCCGACTGGGGCTCAGACATGGAATAAACTTCCTATGCCTAACCAACCCACGAA
ACGAGCGTGCGGGCACTCAACCGATCGGAGAGGCAAAATGCACAAGCTGGGGATCGGCCCGATCC
CCCCTGCGTGCTGTCGATCCTGCTGACAAAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGA
ACTCGGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
GGCGCTCAGCCGACCGGAGAGGCAGAATGCATAAGCCGAGGATTAGCCCGATCCCTTTTTACGTG
CTGTCGATCCCACTGTCGATCCTGCTACC
Found at i:14630584 original size:26 final size:26
Alignment explanation
Indices: 14630555--14630607 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14630545 CTGGTCTGAT
14630555 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
14630581 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
14630607 C
1 C
14630608 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:14630725 original size:184 final size:184
Alignment explanation
Indices: 14630396--14630765 Score: 441
Period size: 184 Copynumber: 2.0 Consensus size: 184
14630386 TCCGGCTGGG
* *
14630396 GCTTAGACATGGAATAAACTCTGTATGCCTAATCCAACCCACAAACGAGCGTGTGGGCACTCAGC
1 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACAAACGAGCGTGCGGGCACTCAGC
* * * * *
14630461 CGATCGGAGAGGCAAAATGCATAAGTAGGGGATCGGCCCAGTCCCCCCATGCGTGCTGTCGATCC
66 CGACCGGAGAGGCAAAATGCACAAGTAGGGGATCGACCCAGTCCCCCCATGCATACTGTCGATCC
* * *
14630526 TGCTACAGCAACCCTC-GAT-CTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
131 TACTACAGCAACCCTCAG-TCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
14630580 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATAAACTCT-GTATGCCTAAGCCAACCCAC-AAACGAGCGTGCGGGCACTCA
** * *
14630644 GCCGACCGGTTAGGCAGAATGCACAA-TCCAGGGG-TCGACCTC-GTCCCCCC-TGCATACTGTT
64 GCCGACCGGAGAGGCAAAATGCACAAGT--AGGGGATCGACC-CAGTCCCCCCATGCATACTGTC
* *
14630705 GATCCTACTGTC-GTAACCCTCAGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTAT
126 GATCCTACT-ACAGCAACCCTCAGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTAT
14630764 GC
1 GC
14630766 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
183 1 0.01
184 96 0.60
185 56 0.35
186 6 0.04
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAAAATGCACAAGTAGGGGATCGACCCAGTCCCCCCATGCATACTGTCGATCC
TACTACAGCAACCCTCAGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14631073 original size:158 final size:155
Alignment explanation
Indices: 14630581--14631075 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 155
14630571 ACTCTGTATG
*
14630581 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
** * * * * * * *
14630646 CGACCGGTTAGGCAGAATGCACAATCCAGGGGTCGACCTCGTCCCCCCTGCATACTGTTGATCCT
66 CGACCGGAAAGGCAGAATGCACAAGCGA-GGATCGGCCT-GTCCCCCCTGCGTGCTGTCGATCCT
* * *
14630711 ACTGTCGTAACCCTCAGTCCTGTCCGAT
129 ACTGCCGCAACCCTCGGTCC-GTCCGAT
* * * * * *
14630739 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTTTGCAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
** * * * * *
14630803 CCTG-TTGGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGAT
65 CC-GACCGGAAAGGCAGAATGCACAAG-CGAGGATC-GGCCTGTCCCCC-CTGCGTGCTGTCGAT
* * ** **
14630867 CCCACTGCCACAACCCTCGGTCCGGTTGGGG
126 CCTACTGCCGCAACCCTCGGTCC-GTCCGAT
* * * * * * * *
14630898 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGTGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* *
14630963 CGACCGGAGAGGCAGAATGCACAAGCTGAGGATCGGCCTGATCCCCCCTGCGTGCTATCGATCCT
66 CGACCGGAAAGGCAGAATGCACAAGC-GAGGATCGGCCTG-TCCCCCCTGCGTGCTGTCGATCCT
*
14631028 GCTGCCGCAACCCTCGGTCCGATCCGAT
129 ACTGCCGCAACCCTCGGTCCG-TCCGAT
14631056 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
14631076 TGTCTGCTTA
Statistics
Matches: 264, Mismatches: 62, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 142 0.54
159 118 0.45
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
CGACCGGAAAGGCAGAATGCACAAGCGAGGATCGGCCTGTCCCCCCTGCGTGCTGTCGATCCTAC
TGCCGCAACCCTCGGTCCGTCCGAT
Found at i:14637974 original size:159 final size:156
Alignment explanation
Indices: 14637517--14638015 Score: 424
Period size: 159 Copynumber: 3.2 Consensus size: 156
14637507 GGCTCAAAAT
*
14637517 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGG-AGCTCAGC
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCA-CTCAGC
* * * * * * *
14637581 CGCCCGGAGAGGTAGAATCGCAAGTCGAGGATC-AGTCTGGT-CCCCCCTGCGTGCTGTTGATCC
65 CGACCGAAGAGGCAGAATCGTAAGTCGAGGATCGA-CCCGGTCCCCCCCTGTGTGCTG-TGATCC
* ** * *
14637644 TACTATCGCAACCCTCGGTTCGGTTCGAT
128 TACTGTCGCAACCCTCGGTTCGACTAGAG
* * * *
14637673 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAC-GAGCGTGCGGGCACTGAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCACTCAG
** * * * *
14637737 CCGGTCGAAGAGGCATAAT-GTACAGGTTGGGGATCGGCCCGGTCCCCCTCTACATGT-TGCTG-
64 CCGACCGAAGAGGCAGAATCGTA-A-GTCGAGGATCGACCCGGTCCCCC-C--C-TGTGTGCTGT
* ** * * * *
14637799 G-TCTTGTTGCCACAACCCTCGGTTTGACTAGGG
123 GATCCTACTGTCGCAACCCTCGGTTCGACTAGAG
* *
14637832 CTTAGACATTGAATGAACTCAC-TAGGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
* *
14637896 CCGACCGAAAAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATC
64 CCGACCGAAGAGGCAGAAT-CGTAAGTCGAGGATCGACCCGGTCCCCCCCTGTGTGCTGT-GATC
* ** * *
14637961 CTACTGTCGCAACCCTC-ATTCCGGTTCGAT
127 CTACTGTCGCAACCCTCGGTT-CGACTAGAG
14637991 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACT-GGAATGAACTCCGTAT
14638016 TCTTAGCCTG
Statistics
Matches: 263, Mismatches: 57, Indels: 43
0.72 0.16 0.12
Matches are distributed among these distances:
155 3 0.01
156 16 0.06
157 62 0.24
158 19 0.07
159 146 0.56
160 6 0.02
161 3 0.01
162 6 0.02
163 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAGCC
GACCGAAGAGGCAGAATCGTAAGTCGAGGATCGACCCGGTCCCCCCCTGTGTGCTGTGATCCTAC
TGTCGCAACCCTCGGTTCGACTAGAG
Found at i:14638019 original size:26 final size:26
Alignment explanation
Indices: 14637990--14638041 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14637980 TCCGGTTCGA
14637990 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
* *
14638016 TCTTAGCCTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
14638042 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:14638401 original size:26 final size:26
Alignment explanation
Indices: 14638372--14638424 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14638362 CCGGTCTGAT
*
14638372 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14638398 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14638424 C
1 C
14638425 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14638813 original size:159 final size:160
Alignment explanation
Indices: 14638397--14638814 Score: 434
Period size: 159 Copynumber: 2.6 Consensus size: 160
14638387 AACTCTGTAT
* *
14638397 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
* * * * * *
14638462 CCGGCCGGAGAAGCAGAATGGGCAAGCCAGGGAT-AGACCCAATCCCTCTTTCATGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGACCCAAGCCCTCTTTCATCCTACCGATC
** ** * * *
14638526 CTGCTGTCGCAACCCTCAGTCTGGTCTTGA
131 CCACTACCACAACCCTCAGTCTCGACTTGA
* * * * *
14638556 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCA
* * * * *
14638620 GCTGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCA-ACCC-AGCCCTCTTCTACGTCCTACCG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGACCCAAGCCCTCTT-T-CATCCTACCG
*
14638683 ATCCCACTACCACAACCCTCGGTC-CGAC-TGA
128 ATCCCACTACCACAACCCTCAGTCTCGACTTGA
* * * * * * *
14638714 GGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAATGCGCATGCGGGGGCACA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCA
* * *
14638779 GCCGATCGGAGAGGAAGAATGCGCAAACCAGGGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATC
14638815 GGTCCGGTCC
Statistics
Matches: 208, Mismatches: 45, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
158 12 0.06
159 169 0.81
160 27 0.13
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.18
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGACCCAAGCCCTCTTTCATCCTACCGATC
CCACTACCACAACCCTCAGTCTCGACTTGA
Found at i:14640952 original size:26 final size:26
Alignment explanation
Indices: 14640923--14640975 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14640913 CTGGTCCGAT
14640923 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14640949 CTTAGACATGGAGTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14640975 C
1 C
14640976 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14641205 original size:525 final size:510
Alignment explanation
Indices: 14640203--14641222 Score: 1097
Period size: 525 Copynumber: 2.0 Consensus size: 510
14640193 CTGGTCCTGC
* * *
14640203 TGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCC
1 TGCCAAAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCA
* * * *
14640268 ATGAAATGAGCATGCGGGTGCTTAGTCGACCGAAAAGGCAGAATGTACAAGCCGGGGATCAGCCC
66 ATGAAATGAGCATGCGAGTGCTCAGTCGACCGAAAAGGCAGAATGCACAAGCAGGGGATCAGCCC
* * * *
14640333 GGTCCCCCCTACGTGCTACCAATCTTACTACTGGTCCTGCTATGCAACCTTCGGTCCGATCCAAT
131 GATCCCCCCTACGTGCTACCAATCCTACTACTGGTCCTGCTATGCAACCCTCGATCCGATCCAAT
* *
14640398 CTTAGACTGGGAACGAACACCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC
196 CTTAGACTGGGAACGAACACCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCC
* ** * * *
14640463 ACGAAAGGAGCATGCGGGCGTTCAGCCAGTTGGAGAGGCAGAATGCACAAGCCGGGGACCGACCC
261 ACAAAAGGAGCATGCGGGCACTCAACCAGTCGAAGAGGCAGAATGCACAAGCCGGGGACCGACCC
* * * *
14640528 AGTCCCCTCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGG
326 AGTCCCCTCTGCGTGCTATCGATCCCGCTGCCACAACCCTCGATCTGGTCTGAGCTTAGACTGGG
* ** * * *
14640593 AATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTACAAGTGCTGAGTCGAGCGAAGAG
391 AATGAACCCCCTATGCCTAAACCAACCCACGAAACGAGCATACAAGTGCTCAGTCGAGCGAAGAG
* *
14640658 GAATAATGTGCAAGATGGGGATCTG-CCCGGTCCCCCTCTGCATCCTACCAGTTTCGA
456 GAAGAA-GTGCAAGACGGGGATC-GACCCGGT-CCCCTCTGCATCCTACCAGTTTCGA
* * *
14640715 TGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCA
1 TGCCAAAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCA
* * * * * * ** * *
14640780 ATGAAATGAGCGTGCGAGTGCTCAG-CAGGCTGGAGAGGTAGAATGCGTAAGCAGTGGATCGGCC
66 ATGAAATGAGCATGCGAGTGCTCAGTC-GACCGAAAAGGCAGAATGCACAAGCAGGGGATCAGCC
* * * *
14640844 CGATCCCCCCTACATGCTATCGATCTTACTGCTGATCCTATTACTGGTCCTGCTGTCGTAACCCT
130 CGATCCCCCCTAC--G---T-G--C-TAC--C-AATCCTACTACTGGTCCTGCTAT-GCAACCCT
* * * * * * *
14640909 CGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAGTGAACTCCGTAT
182 CGATCCGATCCAATCTTAGACTGGGAACGAACACCATATGCTTAGACATGGAATGAACTCCGTAT
* ** * *
14640974 GCCTAAGACAACCCACAAAATGAGTGTGCGGGCACTCAACCGGTCGAAGAGGCAGAATGCGCAAG
247 GCCTAAGACAACCCACAAAAGGAGCATGCGGGCACTCAACCAGTCGAAGAGGCAGAATGCACAAG
* * * * *
14641039 TCGGGGATCGACCC-GATCCCCCTCTGTGTGCTGTCGATCCCGTTGCCACAACCCTC-AGTCTGG
312 CCGGGGACCGACCCAG-T-CCCCTCTGCGTGCTATCGATCCCGCTGCCACAACCCTCGA-TCTGG
* ** *
14641102 -CTGGGGCTTAGACAT-GGAATGAACCCCCTATGCCTAAACCAACCCACGAAACGAGCATGGAGG
374 TCT-GAGCTTAGAC-TGGGAATGAACCCCCTATGCCTAAACCAACCCACGAAACGAGCATACAAG
**
14641165 TGCTCAGTCG-GTCGTAA-AGGCGGAA-TGCATA-ACCGGGGATCGACCCGGTCCCCTCTGC
437 TGCTCAGTCGAG-CG-AAGAGGAAGAAGTGCA-AGA-CGGGGATCGACCCGGTCCCCTCTGC
14641223 GTGCTGCCAA
Statistics
Matches: 413, Mismatches: 71, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
511 1 0.00
512 119 0.29
514 1 0.00
517 1 0.00
518 1 0.00
520 1 0.00
521 3 0.01
523 1 0.00
524 35 0.08
525 146 0.35
526 101 0.24
527 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (510 bp):
TGCCAAAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCA
ATGAAATGAGCATGCGAGTGCTCAGTCGACCGAAAAGGCAGAATGCACAAGCAGGGGATCAGCCC
GATCCCCCCTACGTGCTACCAATCCTACTACTGGTCCTGCTATGCAACCCTCGATCCGATCCAAT
CTTAGACTGGGAACGAACACCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCC
ACAAAAGGAGCATGCGGGCACTCAACCAGTCGAAGAGGCAGAATGCACAAGCCGGGGACCGACCC
AGTCCCCTCTGCGTGCTATCGATCCCGCTGCCACAACCCTCGATCTGGTCTGAGCTTAGACTGGG
AATGAACCCCCTATGCCTAAACCAACCCACGAAACGAGCATACAAGTGCTCAGTCGAGCGAAGAG
GAAGAAGTGCAAGACGGGGATCGACCCGGTCCCCTCTGCATCCTACCAGTTTCGA
Found at i:14642046 original size:159 final size:159
Alignment explanation
Indices: 14641656--14642245 Score: 416
Period size: 159 Copynumber: 3.7 Consensus size: 159
14641646 AACTCCGTAT
* * * ** *
14641656 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTG--TGCGGGCGCTC
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCAACAAAAC-AG-GCATGAGGGCGCTC
** * * * * **
14641719 AACCGGTCGGAGAGGCAGAATGCGCAAG-TCAGAGATCGACCCGATCCCCCT-TGCATGCTGTCG
64 AGTCGGTCGGAGAGGCAGAATGCACAAGCTGAG-GATCGACCCGATCCCCCTCTACATGTTACCG
** * * * * * *
14641782 ATCCTACTGCCGCAACCTTCAGTCCAGTCT-GA
128 ATCCCGCTGCCACAACCCTCAAT-CTGGCTAGG
* * * ** * * *
14641814 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAATTCAACC--CAAGGAAC-GAGCGTGCGGGCGT
1 GCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCAACAA--AACAG-GCATGAGGGCGC
* * * * * * * * *
14641875 TGAGCCGATCGGAGAGGCATAATGCACAAG-TCGAGGATTGGCCTGGTCCCCCTCTACGTGTTAC
62 TCAGTCGGTCGGAGAGGCAGAATGCACAAGCT-GAGGATCGACCCGATCCCCCTCTACATGTTAC
* * * * *
14641939 CGGTCCCGCTGTCACAACCTTCGAT-TCGGCTGGG
126 CGATCCCGCTGCCACAACCCTCAATCT-GGCTAGG
* * *
14641973 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCATGCCGGG-GCTCA
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCAACAAAACAGGCATG-AGGGCGCTCA
* * * * **
14642037 G-CAGGTCGGAGAGTCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTTTACATGTTGTCGA
65 GTC-GGTCGGAGAGGCAGAATGCACAAGCTGAGGATCGACCCGATCCCCCTCTACATGTTACCGA
*
14642101 TCCTGCTGCCACAACCCTCAATCTGGCTAGG
129 TCCCGCTGCCACAACCCTCAATCTGGCTAGG
* * *
14642132 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGAGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCAACAAAACAGGCATGAGGGCGCTCAG
* * * *
14642197 TCGGCCGGAGAGGAAGAATGCACAAGC-CAGAGATCGGCCCGATCCCCCT
66 TCGGTCGGAGAGGCAGAATGCACAAGCTGAG-GATCGACCCGATCCCCCT
14642246 ATGTGCTGTC
Statistics
Matches: 338, Mismatches: 74, Indels: 39
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 1 0.00
158 92 0.27
159 231 0.68
160 9 0.03
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCAACAAAACAGGCATGAGGGCGCTCAG
TCGGTCGGAGAGGCAGAATGCACAAGCTGAGGATCGACCCGATCCCCCTCTACATGTTACCGATC
CCGCTGCCACAACCCTCAATCTGGCTAGG
Found at i:14642672 original size:112 final size:112
Alignment explanation
Indices: 14642475--14642703 Score: 431
Period size: 112 Copynumber: 2.0 Consensus size: 112
14642465 CAACCCTCGG
14642475 CCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCAATGAAATGAGCGTAC
1 CCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCAATGAAATGAGCGTAC
*
14642540 GAGCGATCAACCGGCCAGAGAGGCAGAATGCACAAGTCGGGGATCGA
66 GAGCGATCAACCGGCCAGAGAGGCAGAATGCACAAGTCAGGGATCGA
*
14642587 CCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAATGAGCGTAC
1 CCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCAATGAAATGAGCGTAC
*
14642652 GAGCGATCAACCGGCCAGAGAGGCAGAATGCACAAGTCAGGGATCGG
66 GAGCGATCAACCGGCCAGAGAGGCAGAATGCACAAGTCAGGGATCGA
14642699 CCCGA
1 CCCGA
14642704 TCCCTCCTGC
Statistics
Matches: 114, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 114 1.00
ACGTcount: A:0.31, C:0.25, G:0.30, T:0.15
Consensus pattern (112 bp):
CCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCAATGAAATGAGCGTAC
GAGCGATCAACCGGCCAGAGAGGCAGAATGCACAAGTCAGGGATCGA
Found at i:14643461 original size:26 final size:26
Alignment explanation
Indices: 14643425--14643477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14643415 CTGGACCAAT
*
14643425 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14643451 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14643477 C
1 C
14643478 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14644341 original size:26 final size:26
Alignment explanation
Indices: 14644291--14644342 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14644281 CGGTCTGATG
*
14644291 TTAGACTGGGAATGAACTCCTTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
14644317 TTAGACTAGGG-ATGAACTTCGTATGC
1 TTAGACT-GGGAATGAACTCCGTATGC
14644343 CTAAATCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14645679 original size:159 final size:159
Alignment explanation
Indices: 14645380--14645837 Score: 414
Period size: 159 Copynumber: 2.9 Consensus size: 159
14645370 AACTCCATAT
* * * * *
14645380 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA-CCAGGAAACGAGCA-TGC-GAGCGTTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAG-AGTGCAG-GCGCTC
* ** * * * **
14645442 A-CCGA-CCAGAGAGGCAGAATGCGCAAGC-CAGGATCGGCTCGGTCCCCCCCTGCGTGCTGTTG
64 AGCCGATCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCCTGCGTGCTGCCG
** *
14645504 ATCCTGCTGCTGCAACCATTGGTCCGATCT-GA
128 ATCCTGCTGCCACAACCATCGGTCCGA-CTGGA
* * * * * *
14645536 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGAGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGTGCAGGCGCTCA
* *
14645600 GCCGATCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGAT
65 GCCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCCTGCGTGCTGCCGAT
* *
14645665 CCAT-CTGCCACAACCCTCGGTCCGACTGGG
130 CC-TGCTGCCACAACCATCGGTCCGACTGGA
* ** * *
14645695 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGTGCAGGCGCTCAG
* * * * * * * * *
14645760 CCGGTCGGAGAGGCAGAATGCGCAGGCTGGAGATCGA-CCTGGCCCTCCCTGTGTGCTGTCGATC
66 CCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCCTGCGTGCTGCCGATC
* *
14645824 CTGCTACCGCAACC
131 CTGCTGCCACAACC
14645838 CTTGATCTAA
Statistics
Matches: 243, Mismatches: 48, Indels: 20
0.78 0.15 0.06
Matches are distributed among these distances:
155 1 0.00
156 31 0.13
157 19 0.08
158 56 0.23
159 134 0.55
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGTGCAGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCCTGCGTGCTGCCGATC
CTGCTGCCACAACCATCGGTCCGACTGGA
Found at i:14646748 original size:158 final size:157
Alignment explanation
Indices: 14646247--14646748 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 157
14646237 ACTCCGTATG
* *
14646247 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA-
1 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACAGGCGT-CGGGCGCT-AAG
* * * * * *
14646311 -TAGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGGTCCCATC-TACGTGCTGTCGAT
64 CCA-GTCGAAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCC-TCTTGCGTGCTATCGAT
* * * *
14646374 CCTGCTACCGTAACCCTT-GATCTGATCTGAT
127 CCTGCTGCCGCAA-CCTTCGGTCTGGTCTGAT
* * * * * *
14646405 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGCG-CAGGCACTAA
1 CTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACGAAAC-AG-GCGTCGGGCGCTAA
* * * * * * * *
14646468 GCCGGTCGAAGAGGTATAATGCACAAGCCAAGGATTGACCCAGTCCCCCTCTGCGTGCTATCGGT
63 GCCAGTCGAAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCTCT-TGCGTGCTATCGAT
* * * **
14646533 CCCGCTGCCACAACCCTCGGTCTGG-CTGGGG
127 CCTGCTGCCGCAACCTTCGGTCTGGTCT-GAT
* * * * * *
14646564 CTTAGACATAGAATGGACTCCCTATACCTAAGCCAACCCATGAAATAGGCGTACGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACAGGCGT-CGGGCGCTAAGC
* * *
14646629 CAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCTCTTGCGTGCTATCGATCCT
65 CAGTCGAAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCTCTTGCGTGCTATCGATCCT
* *
14646694 GCTGTCGCAACCTTCGGTCCGGTCTGAT
130 GCTGCCGCAACCTTCGGTCTGGTCTGAT
14646722 CTTAGAC-TGGGAATGAACTCCGTATAC
1 CTTAGACAT-GGAATGAACTCCGTATAC
14646749 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 62, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 8 0.03
158 145 0.54
159 111 0.41
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACAGGCGTCGGGCGCTAAGCC
AGTCGAAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCTCTTGCGTGCTATCGATCCTG
CTGCCGCAACCTTCGGTCTGGTCTGAT
Found at i:14646751 original size:26 final size:26
Alignment explanation
Indices: 14646722--14646772 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14646712 CCGGTCTGAT
14646722 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
14646748 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14646773 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:14647756 original size:159 final size:159
Alignment explanation
Indices: 14647467--14647762 Score: 432
Period size: 159 Copynumber: 1.9 Consensus size: 159
14647457 AACTCTGTAC
14647467 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAG
* ** * * * * *
14647532 TCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCATTCTCCCTCTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCCTACGTGCTATCGATC
14647597 CTACTACCACAACCCTCAGTCCAGCTGGG
131 CTACTACCACAACCCTCAGTCCAGCTGGG
* * **
14647626 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAG
* * *
14647691 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCAGGTCCCCCCCTGCGTGCTATTGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCA-GTCCCCCCCTACGTGCTATCGAT
*
14647755 CCTGCTAC
130 CCTACTAC
14647763 TGGTCCTGCA
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
158 4 0.03
159 116 0.97
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCCTACGTGCTATCGATC
CTACTACCACAACCCTCAGTCCAGCTGGG
Found at i:14648182 original size:26 final size:26
Alignment explanation
Indices: 14648141--14648193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14648131 TCGGTCCGAT
14648141 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCTGCATG
* * *
14648167 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGCATG
14648193 C
1 C
14648194 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGCATG
Found at i:14649401 original size:26 final size:26
Alignment explanation
Indices: 14649372--14649441 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
14649362 TCTTAGACTG
14649372 GGAATGAACTCCGTATGCTTAAACAT
1 GGAATGAACTCCGTATGCTTAAACAT
* *
14649398 GGAATGAACTTCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAAACAT
14649424 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14649442 CTAAGCCAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAAACAT
Found at i:14649613 original size:26 final size:26
Alignment explanation
Indices: 14649584--14649639 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
14649574 CCGGTCTGAT
*
14649584 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14649610 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14649636 CTTA
1 CTTA
14649640 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14650034 original size:159 final size:158
Alignment explanation
Indices: 14649609--14650038 Score: 393
Period size: 159 Copynumber: 2.7 Consensus size: 158
14649599 AACTCTGTAT
* *
14649609 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAG-TGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCT-TGCAGGCGCTCA
* * * * * * * *
14649673 ACCGATCAGATAGGTAGAATA-AGTAAGCCAAGGACTAGCCCGGTCCCCCCTGCATGCTGTCGAT
65 ACCGATCGGAAAGGCAAAATACA-CAAGCCAGGGATTAGCCCGGTCCCCCCTGCATGCTGCCGAT
* * ** * * *
14649737 CCTGCTGCTGCAACCCTTGGTCTGGTCCAA
129 CCCGCTCCCACAACCCTCGGTCCGCTCCAA
* * * * * *
14649767 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCGCTCA
* * * * ** ** * *
14649830 AGCCAATCGGAAAGGCATAATACGCAAGCCGGGGATCGGTTCGGTCCCCTTCTGCGTGCTGCCGA
65 A-CCGATCGGAAAGGCAAAATACACAAGCCAGGGATTAGCCCGGTCCCC-CCTGCATGCTGCCGA
***
14649895 TCCCGCTCCCACAACCCTCGGTCCGACT-GGG
128 TCCCGCTCCCACAACCCTCGGTCCG-CTCCAA
* * *
14649926 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCTTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCGCTCAA
* * *
14649991 TCGATCGGAGAGGCAAAATACACAAGCCTGGGATTAGCCCGGTCCCCC
66 CCGATCGGAAAGGCAAAATACACAAGCCAGGGATTAGCCCGGTCCCCC
14650039 TACGTGCTGT
Statistics
Matches: 209, Mismatches: 55, Indels: 16
0.75 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 83 0.40
159 119 0.57
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCGCTCAA
CCGATCGGAAAGGCAAAATACACAAGCCAGGGATTAGCCCGGTCCCCCCTGCATGCTGCCGATCC
CGCTCCCACAACCCTCGGTCCGCTCCAA
Found at i:14650307 original size:304 final size:304
Alignment explanation
Indices: 14649747--14650350 Score: 746
Period size: 304 Copynumber: 2.0 Consensus size: 304
14649737 CCTGCTGCTG
* ** *
14649747 CAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAA
* * * * * * *
14649812 ACAAGCGTGCAGGTGCTAAGCCAATCGGAAAGGCATAATACGCAAGCCGGGGATCGGTTCGGTCC
66 ACAAGCGTACAGGTGCTAAGCCAAGCCGAAAGGCATAATACACAAGCCGGGGATCAGCTCGATCC
* * * * * *
14649877 CCTTCTGCGTGCTGCCGATCCCGCTCCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG
131 CCCTCTGAGTGATGCCGATCCCACTCCCACAACCCTCAGTCCGACTGGGACTTAGACATGGAATG
* * *
14649942 AACTCCCTATGCCTAAGCCAACCCATGGAACGGGCTTGCAGGCGCTCAATCGATCGGAGAGGCAA
196 AACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCAGGCGCTCAATCGATCGGAGAGGCAA
*
14650007 AATACACAAGCCT-GGGATTAGCCCGGTCCCCCTACGTGCTGTCA
261 AATACACAAG-CTGGGGATCAGCCCGGTCCCCCTACGTGCTGTCA
* *
14650051 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAA
1 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAA
** * ** * *
14650116 ATGAGCGTACAGGTGCTGAG-CTGGCCGAAGAGGCATAATGCACAAGTCGGGGATCAGCTCGATC
66 ACAAGCGTACAGGTGCTAAGCCAAGCCGAA-AGGCATAATACACAAGCCGGGGATCAGCTCGATC
* * * *
14650180 CCCCTCTGAGTGATGCCGGTCCCACTGCCACAACCCTCAGTTCGATTGGGACTTAGACATGGAAT
130 CCCCTCTGAGTGATGCCGATCCCACTCCCACAACCCTCAGTCCGACTGGGACTTAGACATGGAAT
* * * * * * *
14650245 GAACTGCCTATGCCTAAGCCAACCCAAGAAATGGGCATGCGGGTGCTTAGTCGA-CTGGAGAGGT
195 GAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCAGGCGCTCAATCGATC-GGAGAGGC
* * * * *
14650309 AGAATGCACAAGTTGGGGATCAGCTCGGTCCCCCTGCGTGCT
259 AAAATACACAAGCTGGGGATCAGCCCGGTCCCCCTACGTGCT
14650351 ACTGATCCTA
Statistics
Matches: 251, Mismatches: 46, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
303 7 0.03
304 244 0.97
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (304 bp):
CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAA
ACAAGCGTACAGGTGCTAAGCCAAGCCGAAAGGCATAATACACAAGCCGGGGATCAGCTCGATCC
CCCTCTGAGTGATGCCGATCCCACTCCCACAACCCTCAGTCCGACTGGGACTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCAGGCGCTCAATCGATCGGAGAGGCAA
AATACACAAGCTGGGGATCAGCCCGGTCCCCCTACGTGCTGTCA
Found at i:14650429 original size:26 final size:26
Alignment explanation
Indices: 14650388--14650440 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14650378 TCGGTCTGAT
*
14650388 CTTAGACTGGAAATGAGCTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
14650414 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14650440 C
1 C
14650441 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14650797 original size:26 final size:26
Alignment explanation
Indices: 14650768--14650820 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14650758 CCGATCCGAT
14650768 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14650794 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14650820 C
1 C
14650821 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14651160 original size:26 final size:26
Alignment explanation
Indices: 14651109--14651161 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14651099 CTGGTCTGAT
*
14651109 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14651135 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14651161 C
1 C
14651162 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14651512 original size:352 final size:350
Alignment explanation
Indices: 14650498--14651609 Score: 1046
Period size: 352 Copynumber: 3.2 Consensus size: 350
14650488 AGGCCGGTCA
* * * *
14650498 GAGAGGCATAATACACAAGCCAGGGATCAGCCCG-GTCCCCCTCTGCGTGCTGCCGATCCCACTG
1 GAGAGGCATAATGCACAAGTCGGGGATCAGCCCGAGTCCCCCTCTACGTGCTGCCGATCCC-CTG
* * * * * *
14650562 CCGGTCCTGCTACCACAACCCTCGGTCTGACTGGGGTTTAAACATGGAATGGACTCCGTATGCCT
65 -CGGTCCTGCTA-C-C-ACCCTCGGTCTGACAGGGGCTTAGACATGGAATGAACTCTGAATGCCT
* * * * *
14650627 AAGCCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGATAGGAGAGGCAGAATGCGTAAGCCAG
126 AAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCGG
* ** **
14650692 GGATCGGCCCGATCCCCCCTATGTGCGGCCGATCCTGCTGCTGGTCTTGCTATCACAACCTTCGG
191 GGATCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTG-T-G----GC-A--AC-A-C-TCGG
* *
14650757 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
244 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
* * *
14650822 TAAGTCAACCCACGAAATC-AGCGTGCGAGCACTAAGCCGATCG
309 TAAGTCAACCCAC-AAAACGAGCGTGCG-GCGCTCAGCCGATCG
* * *
14650865 GAGAGGCATAATGCACAAG-CTGGGGATCAGCCC-AGTCCCCCTCTGA-TTGCTGTCGGT-CCC-
1 GAGAGGCATAATGCACAAGTC-GGGGATCAGCCCGAGTCCCCCTCT-ACGTGCTGCCGATCCCCT
* * *
14650925 GCAG--C--C-ACAACCCTCGGTC-CAGCAGGGGCTTAGACATGGAATGAACTCCCT-AA-GCCT
64 GCGGTCCTGCTACCACCCTCGGTCTGA-CAGGGGCTTAGACATGGAATGAACT--CTGAATGCCT
* * * * *
14650982 AAGACAACCCGCGAAACGGGCGTGC-GGTGCTCAGCCGGTC-AGAGAGGCAGAATGTGTAAGCCG
126 AAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGA-AGAGGCAGAATGCGTAAGCCG
* ** * * *
14651045 GGGATCGGCTCGAT-CCCCCTGCGTGCTATCGATCCTGCTGCCGCAGCCCTCGGTCTGGTCTGAT
190 GGGATCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTGTGGCAACACTCGGTCTGGTCCGAT
* * *
14651109 CTTAGACTGGGAATGAACTGCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACC
255 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
14651173 CATAAAACGAGCGTGTGGTCGCTCAGACG-GCAG
319 CACAAAACGAGCGTGCGG-CGCTCAGCCGATC-G
*
14651206 GAGAGGCATAATGCACAAGTCGGGGATCAACCCGA-TCCCCCTCTACGTGCTGCCGATCCCGCTG
1 GAGAGGCATAATGCACAAGTCGGGGATCAGCCCGAGTCCCCCTCTACGTGCTGCCGATCCC-CTG
* * * *
14651270 TCGGTCCTGCTGCCACCCTCAGTCTGACGGGGGCTTAGACACGGAATGAACTCTGAATGCCTAAG
65 -CGGTCCTGCTACCACCCTCGGTCTGACAGGGGCTTAGACATGGAATGAACTCTGAATGCCTAAG
* * * * * * *
14651335 CCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCGAAGAGGCAAAATGCACT-TGCCGGGG
129 CCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGCAGAATGC-GTAAGCCGGGG
* * * * * * *
14651399 ATTGGCTCGGTCCCCCCTGCGTGTTACCGATCCTACTGTGGCAACACTCAGTCTGGTCCAATCAT
193 ATCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTGTGGCAACACTCGGTCTGGTCCGATCTT
** * * *
14651464 AGACTGGGAATGAACTTTGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACG
258 AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACA
*
14651529 AAACGAGCGTGCGGGCGCTCGGCCGATCG
323 AAACGAGCGTGC-GGCGCTCAGCCGATCG
* * * * ** *
14651558 GAGAGGTAGAATGCGCAAGTCGGGAATTGGCCCGATTCCCCC-CTACGTGCTG
1 GAGAGGCATAATGCACAAGTCGGGGATCAGCCCGAGTCCCCCTCTACGTGCTG
14651610 TCAATCCTAC
Statistics
Matches: 608, Mismatches: 103, Indels: 83
0.77 0.13 0.10
Matches are distributed among these distances:
340 8 0.01
341 135 0.22
342 5 0.01
343 1 0.00
344 2 0.00
345 2 0.00
346 1 0.00
347 3 0.00
348 2 0.00
349 3 0.00
350 58 0.10
351 39 0.06
352 157 0.26
353 31 0.05
354 46 0.08
355 55 0.09
356 1 0.00
357 2 0.00
358 1 0.00
359 1 0.00
361 1 0.00
363 2 0.00
364 1 0.00
365 1 0.00
366 3 0.00
367 47 0.08
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (350 bp):
GAGAGGCATAATGCACAAGTCGGGGATCAGCCCGAGTCCCCCTCTACGTGCTGCCGATCCCCTGC
GGTCCTGCTACCACCCTCGGTCTGACAGGGGCTTAGACATGGAATGAACTCTGAATGCCTAAGCC
AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATC
GGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTGTGGCAACACTCGGTCTGGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
CGAGCGTGCGGCGCTCAGCCGATCG
Found at i:14652133 original size:501 final size:502
Alignment explanation
Indices: 14651291--14652482 Score: 1285
Period size: 501 Copynumber: 2.4 Consensus size: 502
14651281 GCCACCCTCA
* * *** * * * *
14651291 GTCTGACGGGGGCTTAGACACGGAATGAACTCTGAATGCCTAAGCCAACCCATGAAACGAGCGTG
1 GTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAACCGTC
* * * * * * ** **
14651356 CGGGCGCTTAGCCGACCGAAGAGGCAAAATGCACTTGCCGGGGATTGGCTCGGTCCCCCCTGCGT
66 CGGGCACTCAGCCGACCGGAGAGGGAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGT
* ** *** * * ** * **
14651421 GTTACCGATCCTACTGTGGCAACACTC-AGTCTGGTCCAATCATAGACTGGGAATGAACTTTGTA
131 GCTGTCGATCCTACTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* *
14651485 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCG
195 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * ** * *
14651550 GCCGATCGGAGAGGTAGAATGCGCAAGTCGGGAATTGGCCCGATTCCCCCCTACGTGCTGTCAAT
260 GCCGATCAGAGAGGTAGAATGCACAAGTCGGGAATCAGCCCGATTCCCCACTACGTGCTATCAAT
* * *
14651615 CCTACTACCAGAACCCTCGGTCCGATCCAATCTTAGACAGGGAATGAACTCCATATACCTAAGTC
325 CCTACTACCACAACCCTCGGTCCGATCCAATCTTAGACAGGGAATGAACCCCATATACATAAGTC
* * *
14651680 ACA-CGC-TCGAAACGAGCGTGTGGGCGCTGAG-CGACCGGAGAGGCATAATGCGTAAGCCAGGG
390 A-ATC-CAT-GAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGG
* * * * * *
14651742 ATCGGCCTGGTCCCCCTCTACGTGCTGTCGG-CGTCGCTGCCATAACCTTTG
452 ATCGGCCCGATCCCCCTCTACGTGCTGTCGGTC-CCACTGCCACAACCCTTG
* * * * * **
14651793 GT-TCGGCTGGGGCTTAGACTTGGAATGAACTCCTTATGCCTAAGCCATCCCATGAAATGACCGT
1 GTCT-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAACCGT
* ** * ** * *
14651857 GCGGGTGCTCAGCTGGTCGGAGAGGGAGAATGCGCAAGCCGGGGATCGGC-CTGGTCCCCCCTGT
65 CCGGGCACTCAGCCGACCGGAGAGGGAGAATGCGCAAGCCGGGGATCAGCTC-GGTCCCCCCTGC
* * * * *
14651921 GTGTTGT-GATCTTGCTGCCGCAACCCTCGATCCGAT-TCGATCTTAGACTGGGAATGAACTCCG
129 GTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCG
* * ** ** * *
14651984 TATGCTTAGAC-TGGGGATGAACTTTGTATGCCTAAGTTAACCCACAAAATGAGCGTGTGGGCGC
193 TATGCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGC
* *
14652048 TCAGCCGATCAGAGAGGTAGAATGCACAAGTCGAGG-ATCAGCTCGA-TCCCTTACTGA-GTGCT
257 TCAGCCGATCAGAGAGGTAGAATGCACAAGTCG-GGAATCAGCCCGATTCCC-CACT-ACGTGCT
* * * * * ** * *
14652110 ATCGATCTTGCTACCACAACCCTCGGTGCGGTCTGATCTTAGACTGGGAATGAACCCCGTATACA
319 ATCAATCCTACTACCACAACCCTCGGTCCGATCCAATCTTAGACAGGGAATGAACCCCATATACA
* *
14652175 TAAGTCAATCCATGAAATGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGTGCAAGCCA
384 TAAGTCAATCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCA
* *
14652240 TGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTTG
449 GGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCACTGCCACAACCCTTG
*
14652294 GTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTC
1 GTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAACCGTC
* *
14652359 CGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCTCGGTCCTCCCTGCGT
66 CGGGCACTCAGCCGACCGGAGAGGGAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGT
* *
14652424 GCTGTCGATCCTACTATCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACT
131 GCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
14652483 TTGTATGCCT
Statistics
Matches: 569, Mismatches: 105, Indels: 32
0.81 0.15 0.05
Matches are distributed among these distances:
500 28 0.05
501 382 0.67
502 158 0.28
503 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (502 bp):
GTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAACCGTC
CGGGCACTCAGCCGACCGGAGAGGGAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGT
GCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGATCAGAGAGGTAGAATGCACAAGTCGGGAATCAGCCCGATTCCCCACTACGTGCTATCAATC
CTACTACCACAACCCTCGGTCCGATCCAATCTTAGACAGGGAATGAACCCCATATACATAAGTCA
ATCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCG
GCCCGATCCCCCTCTACGTGCTGTCGGTCCCACTGCCACAACCCTTG
Found at i:14652286 original size:159 final size:157
Alignment explanation
Indices: 14651988--14652807 Score: 625
Period size: 159 Copynumber: 5.2 Consensus size: 157
14651978 ACTCCGTATG
* *** * ** * *
14651988 CTTAGACTGGGGATGAACTTTGTATGCCTAAGTTAACCCACAAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * **
14652053 CGATC-AGAGAGGTAGAATGCACAAGTCGAGGATC-AGCTCGATCCCTTACTGAGTGCTATCGAT
66 CGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCC-CCCTGCGTGCTGCCGAT
*** *
14652116 CTTGCTACCACAACCCTCGGTGCGGTCTGAT
128 CCCACTGCCACAACCCTCGGT-CGGTCTGAT
* * * * *
14652147 CTTAGACTGGGAATGAAC-CCCGTATACATAAGTCAATCCATGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACTGGGAATGAACTCCC-TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
14652211 CCGACCGAAGAGGCATAATGTGCAAGCCATGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGATC
* * * **
14652276 CCACTGCCACAACCCTTGGTCTGACTGGGG
129 CCACTGCCACAACCCTCGGTCGGTCT-GAT
* * * * *
14652306 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTCCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14652370 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATC-AGCTCGGTCCTCCCTGCGTGCTGTCGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCGTGCTGCCGATC
* ** * *
14652434 CTACTATCGCAACCCTCGATCTGGTCTGAT
129 CCACTGCCACAACCCTCGGTC-GGTCTGAT
*** *
14652464 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG-
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14652528 CGTGCC-AGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCTTCTGCGTGCTGCCGGT
66 CG-ACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC-CCTGCGTGCTGCCGAT
* **
14652592 CCCGCTGCCACAACCCTCGGTCCGG-CTGGGG
128 CCCACTGCCACAACCCTCGGT-CGGTCT-GAT
* *
14652623 CTTAGACAT-GGAATGAACTCCCTATGCCTAAG-CTAACCCATGAAATGGGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGTC-AACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
14652686 GTCGGTCGGAGAGGCAGAATGCGCAAGTCGGAGATCGACCCGATCCACCCTGCGTGCCGCCGATC
64 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATC
*** * * * *
14652751 TTGCTGTCGCAACCCTCGGTCCAGTCCGAT
129 CCACTGCCACAACCCTCGGT-CGGTCTGAT
*
14652781 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
14652808 TTAGATTGGG
Statistics
Matches: 519, Mismatches: 120, Indels: 45
0.76 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 182 0.35
159 324 0.62
160 9 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCC
ACTGCCACAACCCTCGGTCGGTCTGAT
Found at i:14652571 original size:317 final size:316
Alignment explanation
Indices: 14652010--14652801 Score: 1005
Period size: 317 Copynumber: 2.5 Consensus size: 316
14652000 ATGAACTTTG
* * * * *
14652010 TATGCCTAAGTTAACCCACAAAATGAGCGTGTGGGCGCTCAGCCGATCAGAGAGGTAGAATGCAC
1 TATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGC
* ** * * * *
14652075 AAGTCGAGGATCAGCTCGATCCCTTACTGAGTGCTATCGATCTTGCTACCACAACCCTCGGTGCG
66 AAGTCGGGGATCAGCTCGAT-CCTCCCTGCGTGCTGTCGATCTTGCTATCGCAACCCTCGGT-CG
* * *
14652140 GTCTGATCTTAGACTGGGAATGAACCCCGTATACATAAGTCAATCCATGAAATGAGCGTGCGGGC
129 GTCTGATCTTAGACTGGGAATGAACTCCGTATACATAAGTCAACCCATGAAACGAGCGTGCGGGC
* * *
14652205 GCTGAGCCGACCGAAGAGGCATAATGTGCAAGCCATGGATCGGCCCGATCCCCCTCTGCGTGCTG
194 GCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTG
* * *
14652270 TCGGTCCCACTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCC
259 CCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
* ** * * *
14652328 TATGCCTAAGCCAACCCACGAAACAAGCGTCCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGC
1 TATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGC
* * * * *
14652393 AAGCCGGGGATCAGCTCGGTCCTCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTCGATCTGG
66 AAGTCGGGGATCAGCTCGATCCTCCCTGCGTGCTGTCGATCTTGCTATCGCAACCCTCGGTC-GG
** * *
14652458 TCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
130 TCTGATCTTAGACTGGGAATGAACTCCGTATACATAAGTCAACCCATGAAACGAGCGTGCGGGCG
* ** *
14652523 CTGAG-CGTGCC-AGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCTTCTGCGTGCT
195 CTGAGCCG-ACCGA-AGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCT
* *
14652586 GCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCC
258 GCCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
* * * * *
14652645 TATGCCTAAGCTAACCCATGAAATGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGC
1 TATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGC
* * * * * * *
14652710 AAGTCGGAGATC-GACCCGATCCACCCTGCGTGCCGCCGATCTTGCTGTCGCAACCCTCGGTCCA
66 AAGTCGGGGATCAG-CTCGATCCTCCCTGCGTGCTGTCGATCTTGCTATCGCAACCCTCGGT-CG
*
14652774 GTCCGATCTTAGACTGGGAATGAACTCC
129 GTCTGATCTTAGACTGGGAATGAACTCC
14652802 ATATGCTTAG
Statistics
Matches: 401, Mismatches: 68, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
316 5 0.01
317 324 0.81
318 72 0.18
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (316 bp):
TATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGC
AAGTCGGGGATCAGCTCGATCCTCCCTGCGTGCTGTCGATCTTGCTATCGCAACCCTCGGTCGGT
CTGATCTTAGACTGGGAATGAACTCCGTATACATAAGTCAACCCATGAAACGAGCGTGCGGGCGC
TGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCC
GGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
Found at i:14652810 original size:26 final size:26
Alignment explanation
Indices: 14652781--14652833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14652771 CCAGTCCGAT
14652781 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14652807 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14652833 C
1 C
14652834 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14654088 original size:26 final size:26
Alignment explanation
Indices: 14654037--14654089 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14654027 CCAGTCTGAT
**
14654037 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14654063 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
14654089 C
1 C
14654090 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14654327 original size:184 final size:182
Alignment explanation
Indices: 14654016--14654615 Score: 731
Period size: 184 Copynumber: 3.3 Consensus size: 182
14654006 TTTGCTACCG
* *
14654016 CAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
* * *
14654081 TCCCTATGCCTAAGCCAACCCATGAAAT-AGACGTGCGGGCACTCAGTCGACTGGAAAGGCAGAA
66 T-CATATGCCTAAGCCAACCCATGAAATGAG-CGTGCGGGCGCTCAGTCGAC-GGAGAGGCAGAA
* * * * *
14654145 TGCACAAGCCGGGGATCAACCCGATCCCCCATACGTGCTGTCGATCCTGCTACTG
128 TGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTA
* * ** * *
14654200 CAACCCTCGGTCTGGTCTGATCTTAAACTACGAATCAACT-TCGTATGCTTAGAC-TGGGGATGA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACAT-GGAATGA
* * *
14654263 ACTCAGTATGCCTAAGTCAACCCATAAAATGAGCGTACGGGCGCTCAGTCGATCGGAGAGGCAGA
64 ACTCA-TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGA-CGGAGAGGCAGA
* ** * * * *
14654328 ATACGCAAGCCGAAGATCGACCCGGTCCCCCCTGCGTGCTGTCAATCCTGTTGCTA
127 ATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTA
* * *
14654384 CAACCCTCGATCCGGTCCGATCTTAGACTGGCAATGAACTCTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
* * *
14654449 TCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGACCGGAGAGGCAGAAT
66 T-CATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGA-CGGAGAGGCAGAAT
* * * * * *
14654514 GCGCAAGTCGGGGATCGACCTGATCCCCCCTGTGTGTTATCGATCCTGCCA-TCA
129 GCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACT-A
*
14654568 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
14654616 CTAAGTCAAC
Statistics
Matches: 348, Mismatches: 59, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
183 4 0.01
184 337 0.97
185 7 0.02
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (182 bp):
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
TCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGACGGAGAGGCAGAATGC
GCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTA
Found at i:14654456 original size:26 final size:26
Alignment explanation
Indices: 14654405--14654457 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14654395 CCGGTCCGAT
**
14654405 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCATATG
14654431 CTTAGACATGG-AATGAACTCCATATG
1 CTTAGAC-TGGCAATGAACTCCATATG
14654457 C
1 C
14654458 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:14654528 original size:368 final size:374
Alignment explanation
Indices: 14653821--14654615 Score: 955
Period size: 368 Copynumber: 2.1 Consensus size: 374
14653811 TCACTTCCAT
* * * * ** **
14653821 AACCCTCGGGCCAGTCTGATCGTAGACTGGGAATGAACTCCGTATGCTTAGGTTGGGGATGAACT
1 AACCCTCGGTCCGGTCTGATCTTAAACTACGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* * *
14653886 CCATATGCCTAAGTCAACCCATGAAACGAGCCTGTAGGCGCTCAGTCAATCGAAAAGGTAGAATG
66 CCATATGCCTAAGTCAACCCATAAAACGAGCCTGTAGGCGCTCAGTCAATCGAAAAGGCAGAATA
* * *
14653951 CGTAAGTCAAAGATCGACTCGATCCCCCCTGCATGCTATCAATCCTGCTGCTGGTTTTGCTACCG
131 CGCAAGCCAAAGATCGACCCGATCCCCCCTGCATGCTATCAA--CTGC-GCTGG-TTTGCTA-C-
* * * *
14654016 CAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
190 CAACCCTCGATCCAGTCCGATCTTAGACTGGCAATGAACTCTGTATGCTTAGACATGGAATGAAC
* * * *
14654081 TCCCTATGCCTAAGCCAACCCATGAAATAGACGTGCGGGCACTCAGTCGACTGGAAAGGCAGAAT
255 TCCATATGCCTAAGCCAACCCACGAAAGAGACGTGCGGGCACTCAGTCGACCGGAAAGGCAGAAT
* * *
14654146 GCACAAGCCGGGGATCAACCCGATCCCCCATACGTGCTGTCGATCCTGCTA-CTGC
320 GCACAAGCCGGGGATCAACCCGATCCCCCATACGTGCTATCGATCCTGCCATC-AC
* * *
14654201 AACCCTCGGTCTGGTCTGATCTTAAACTACGAATCAACTTCGTATGCTTAGACTGGGGATGAACT
1 AACCCTCGGTCCGGTCTGATCTTAAACTACGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* * * *
14654266 -CAGTATGCCTAAGTCAACCCATAAAATGAG-C-GTACGGGCGCTCAGTCGATCGGAGAGGCAGA
66 CCA-TATGCCTAAGTCAACCCATAAAACGAGCCTGTA--GGCGCTCAGTCAATCGAAAAGGCAGA
* * * *
14654328 ATACGCAAGCCGAAGATCGACCCGGTCCCCCCTGCGTGCTGTCAA-T-C-CT-G-TTGCTA-CAA
128 ATACGCAAGCCAAAGATCGACCCGATCCCCCCTGCATGCTATCAACTGCGCTGGTTTGCTACCAA
*
14654387 CCCTCGATCCGGTCCGATCTTAGACTGGCAATGAACTCTGTATGCTTAGACATGGAATGAACTCC
193 CCCTCGATCCAGTCCGATCTTAGACTGGCAATGAACTCTGTATGCTTAGACATGGAATGAACTCC
* * *
14654452 ATATGCCTAAGCCAACCCACGAAACGAG-CGTGTGGGCGCTCAGTCGACCGGAGAGGCAGAATGC
258 ATATGCCTAAGCCAACCCACGAAA-GAGACGTGCGGGCACTCAGTCGACCGGAAAGGCAGAATGC
* * * * * ** *
14654516 GCAAGTCGGGGATCGACCTGATCCCCCCTGTGTGTTATCGATCCTGCCATCAC
322 ACAAGCCGGGGATCAACCCGATCCCCCATACGTGCTATCGATCCTGCCATCAC
* **
14654569 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGGTCTGATCTTAAACTACGAATGAACTCCGTATGC
14654616 CTAAGTCAAC
Statistics
Matches: 356, Mismatches: 54, Indels: 22
0.82 0.12 0.05
Matches are distributed among these distances:
368 198 0.56
369 3 0.01
371 6 0.02
373 1 0.00
374 2 0.01
376 1 0.00
377 1 0.00
378 3 0.01
379 3 0.01
380 138 0.39
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (374 bp):
AACCCTCGGTCCGGTCTGATCTTAAACTACGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
CCATATGCCTAAGTCAACCCATAAAACGAGCCTGTAGGCGCTCAGTCAATCGAAAAGGCAGAATA
CGCAAGCCAAAGATCGACCCGATCCCCCCTGCATGCTATCAACTGCGCTGGTTTGCTACCAACCC
TCGATCCAGTCCGATCTTAGACTGGCAATGAACTCTGTATGCTTAGACATGGAATGAACTCCATA
TGCCTAAGCCAACCCACGAAAGAGACGTGCGGGCACTCAGTCGACCGGAAAGGCAGAATGCACAA
GCCGGGGATCAACCCGATCCCCCATACGTGCTATCGATCCTGCCATCAC
Found at i:14656088 original size:26 final size:26
Alignment explanation
Indices: 14656059--14656111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14656049 CCGATTCGAT
14656059 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14656085 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14656111 C
1 C
14656112 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14656386 original size:26 final size:26
Alignment explanation
Indices: 14656350--14656402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14656340 CTAGCTTGAT
14656350 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
14656376 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
14656402 C
1 C
14656403 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14657731 original size:27 final size:27
Alignment explanation
Indices: 14657679--14657731 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
14657669 CTTAGACCTG
*
14657679 GGAATGAACTCCCCATATACTTAGACA
1 GGAATGAACTCCCCATATACTAAGACA
* *
14657706 GGAATGAAC-CTCCATATGCCTAAGAC
1 GGAATGAACTCCCCATAT-ACTAAGAC
14657732 CAACCCACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (27 bp):
GGAATGAACTCCCCATATACTAAGACA
Found at i:14658223 original size:26 final size:26
Alignment explanation
Indices: 14658186--14658237 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14658176 TGGTCCAATA
14658186 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14658212 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
14658238 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14658575 original size:159 final size:159
Alignment explanation
Indices: 14658210--14658657 Score: 376
Period size: 159 Copynumber: 2.8 Consensus size: 159
14658200 AACTCCGTAT
*
14658210 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
*
14658275 CCAGTCGGAGAGGCTGAATGCACAAGTCGGGGACCGACCTGATCCCCCTCTGCGTGCTATCGATC
66 CCAGTCGGAGAGCCTGAATGCACAAGTCGGGGACCGACCTGATCCCCCTCTGCGTGCTATCGATC
** * * *
14658340 TTGCTGTCGCAAACCTCAGTTCGCCCTGA
131 CCGCTGCCACAAACCTCAGTCCGCCCTGA
* * * * ** * * *
14658369 TCTTACAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * * * * *
14658433 GCC-GGCTGGAGAGCCAT-AATGCGCAAG-CTGGGGATCG-GCTCGATCCCCTTCTGCGTGCTGT
65 GCCAGTC-GGAGAGCC-TGAATGCACAAGTC-GGGGACCGACCT-GATCCCCCTCTGCGTGCTAT
* * * * * *
14658494 TGGTCCCGCTGCCACAACCCTCGGTCCG-GCTGGG
126 CGATCCCGCTGCCACAAACCTCAGTCCGCCCT-GA
* * *
14658528 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCAGGCGCTCA
* * * * * * * * * *
14658592 ACC-GACCGGAGAGGCAGAATGCATAAGTCGAGGATC-AGCCCGGTCCCCC-CTGCATGCTATCG
65 GCCAG-TCGGAGAGCCTGAATGCACAAGTCGGGGACCGA-CCTGATCCCCCTCTGCGTGCTATCG
14658654 ATCC
128 ATCC
14658658 TGCTACCGCA
Statistics
Matches: 223, Mismatches: 53, Indels: 27
0.74 0.17 0.09
Matches are distributed among these distances:
158 22 0.10
159 196 0.88
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
CCAGTCGGAGAGCCTGAATGCACAAGTCGGGGACCGACCTGATCCCCCTCTGCGTGCTATCGATC
CCGCTGCCACAAACCTCAGTCCGCCCTGA
Found at i:14658727 original size:25 final size:26
Alignment explanation
Indices: 14658689--14658741 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
14658679 AGTTTGATGT
14658689 TAGACTGGGAATGAAC-CCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
14658714 TAGACTGGGGATGAACTCTATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
14658740 TA
1 TA
14658742 AGTCAACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:14660207 original size:56 final size:58
Alignment explanation
Indices: 14660109--14660451 Score: 260
Period size: 57 Copynumber: 6.0 Consensus size: 58
14660099 TTTTTTTTTG
14660109 AGGGAAAATTGATACTTTCAA-TTTTCCCCAAAAATAA-TTTTTTG-AAATTTCGATTTC-
1 AGGG-AAATTGATACTTTCAACTTTTCCCCAAAAATAACTTTTTTGAAAATTT--ATTTCA
* **
14660166 AGGGAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTGAAAATTTATTTCTA
1 AGGGAAATTGATACTTTCAACTTTTCCCCAAAAATAACTTTTTTGAAAATTTATTTC-A
* **
14660224 AGGAAAATTGATA---TCAACTTTTCCCCAAAAATATTTTTTTTTGAAAATTTATTTTTCTTTTT
1 AGGGAAATTGATACTTTCAACTTTTCCCCAAAAATA-ACTTTTTTGAAAATTTA--TTTC-----
14660286 A
58 A
* * *
14660287 ATGGAAAATTGAGATACTTTCAACTTTT-CCCTAAAAT-A-TTTTTTG-AAA-TTATTTTTA
1 A-GGGAAATT--GATACTTTCAACTTTTCCCCAAAAATAACTTTTTTGAAAATTTA-TTTCA
*
14660344 A-GG-AATTGATAC-TTCAACTTTTCCCC-AAAAT-A-TTTTTGGAAAATTTATTTCTA
1 AGGGAAATTGATACTTTCAACTTTTCCCCAAAAATAACTTTTTTGAAAATTTATTTC-A
* * *
14660397 A-GGAAATTGATACTTTCAACTTTTCCACTAAAATATATTTTTTTG-AAATTTATTT
1 AGGGAAATTGATACTTTCAACTTTTCCCCAAAAATA-ACTTTTTTGAAAATTTATTT
14660452 TTCTTTTAAG
Statistics
Matches: 241, Mismatches: 16, Indels: 57
0.77 0.05 0.18
Matches are distributed among these distances:
51 22 0.09
52 14 0.06
53 7 0.03
54 13 0.05
55 31 0.13
56 26 0.11
57 40 0.17
58 29 0.12
59 10 0.04
62 4 0.02
63 6 0.02
64 11 0.05
65 7 0.03
66 4 0.02
68 8 0.03
69 9 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.44
Consensus pattern (58 bp):
AGGGAAATTGATACTTTCAACTTTTCCCCAAAAATAACTTTTTTGAAAATTTATTTCA
Found at i:14660362 original size:51 final size:54
Alignment explanation
Indices: 14660281--14660453 Score: 217
Period size: 51 Copynumber: 3.1 Consensus size: 54
14660271 TTTATTTTTC
14660281 TTTTTAATGGAAAATTGAGATACTTTCAACTTTTCCCTAAAATATTTTTTGAAA-TTA
1 TTTTTAA-GG-AAATT--GATACTTTCAACTTTTCCCTAAAATATTTTTTGAAATTTA
* *
14660338 TTTTTAAGG-AATTGATAC-TTCAACTTTTCCCCAAAATATTTTTGGAAAATTTA
1 TTTTTAAGGAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTG-AAATTTA
*
14660391 TTTCTAAGGAAATTGATACTTTCAACTTTTCCACTAAAATATATTTTTTTGAAATTTA
1 TTTTTAAGGAAATTGATACTTTCAACTTTTCC-CT-AAA-ATA-TTTTTTGAAATTTA
14660449 TTTTT
1 TTTTT
14660454 CTTTTAAGAA
Statistics
Matches: 102, Mismatches: 6, Indels: 15
0.83 0.05 0.12
Matches are distributed among these distances:
51 25 0.25
52 8 0.08
53 11 0.11
54 13 0.13
55 12 0.12
56 3 0.03
57 10 0.10
58 14 0.14
59 6 0.06
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.47
Consensus pattern (54 bp):
TTTTTAAGGAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTGAAATTTA
Found at i:14660634 original size:20 final size:20
Alignment explanation
Indices: 14660605--14660642 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14660595 TATTTAAAGA
14660605 AAATAAAAT-AATAAAAAAT
1 AAATAAAATAAATAAAAAAT
14660624 AAATAAAAATAAATAAAAA
1 AAAT-AAAATAAATAAAAA
14660643 GAATATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (20 bp):
AAATAAAATAAATAAAAAAT
Found at i:14660825 original size:5 final size:5
Alignment explanation
Indices: 14660815--14660841 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
14660805 TTGGTAGCCT
14660815 GGCTC GGCTC GGCTC GGCTC GGCTC GG
1 GGCTC GGCTC GGCTC GGCTC GGCTC GG
14660842 AGGGGGCTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.37, G:0.44, T:0.19
Consensus pattern (5 bp):
GGCTC
Found at i:14661666 original size:3 final size:3
Alignment explanation
Indices: 14661648--14661719 Score: 94
Period size: 3 Copynumber: 23.7 Consensus size: 3
14661638 TAAACCCAAA
*
14661648 AAT ATAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
14661695 -AT AAT AAT AAT -AT AAT AAT ATAT AA
1 AAT AAT AAT AAT AAT AAT AAT A-AT AA
14661720 CTATATACAT
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
2 4 0.06
3 49 0.79
4 9 0.15
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14661731 original size:16 final size:14
Alignment explanation
Indices: 14661648--14661739 Score: 76
Period size: 12 Copynumber: 7.0 Consensus size: 14
14661638 TAAACCCAAA
*
14661648 AATATATAA-AAAT
1 AATATATAATATAT
14661661 AATA-ATAATA-AT
1 AATATATAATATAT
*
14661673 AATA-ATAATAAAT
1 AATATATAATATAT
14661686 AATA-AT-A-ATAT
1 AATATATAATATAT
14661697 AATA-ATAATATAAT
1 AATATATAATAT-AT
14661711 AATATATAACTATAT
1 AATATATAA-TATAT
14661726 ACATATA-AATATAT
1 A-ATATATAATATAT
14661740 TCTAAATAAA
Statistics
Matches: 70, Mismatches: 1, Indels: 15
0.81 0.01 0.17
Matches are distributed among these distances:
11 9 0.13
12 18 0.26
13 15 0.21
14 11 0.16
15 9 0.13
16 8 0.11
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (14 bp):
AATATATAATATAT
Found at i:14661782 original size:8 final size:8
Alignment explanation
Indices: 14661771--14661809 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
14661761 ACAGATATAC
14661771 AAAAAAGA
1 AAAAAAGA
14661779 AAAAAGAGA
1 AAAAA-AGA
14661788 AAAAAAGA
1 AAAAAAGA
**
14661796 AACGAAGA
1 AAAAAAGA
14661804 AAAAAA
1 AAAAAA
14661810 ATACAGGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:14661804 original size:16 final size:17
Alignment explanation
Indices: 14661771--14661810 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
14661761 ACAGATATAC
14661771 AAAAAAGAAAAAAGAGA
1 AAAAAAGAAAAAAGAGA
*
14661788 AAAAAAGAAACGAAGA-A
1 AAAAAAGAAA-AAAGAGA
14661805 AAAAAA
1 AAAAAA
14661811 TACAGGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAAAGAGA
Found at i:14661880 original size:36 final size:35
Alignment explanation
Indices: 14661830--14661920 Score: 110
Period size: 36 Copynumber: 2.5 Consensus size: 35
14661820 AAAATTCAAT
* *
14661830 TGGGCCTTACCCATTTGGGCCAACCCCAATTGATC
1 TGGGCCTAACCCATTTGGGCCAACCCCAAATGATC
* *
14661865 TGGGCCTGAACCCATTTGGGTCAAGCCCAAATGATC
1 TGGGCCT-AACCCATTTGGGCCAACCCCAAATGATC
* *
14661901 TAGGCCTAGACCCAATTGGG
1 TGGGCCTA-ACCCATTTGGG
14661921 TGTCTACAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
35 8 0.17
36 40 0.83
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (35 bp):
TGGGCCTAACCCATTTGGGCCAACCCCAAATGATC
Found at i:14662220 original size:42 final size:41
Alignment explanation
Indices: 14662072--14662533 Score: 679
Period size: 41 Copynumber: 11.1 Consensus size: 41
14662062 TTTTATCAAA
* * * *
14662072 GCTCCTCTAAATAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATT
*
14662115 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
14662156 GCTCATCTAAACAGAGGCACCACGACTTTGGAAAGAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAA-AGTAAATT
14662199 GCT-CTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
14662240 GCTCCTCTAAACAGAGGCA--ACGGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCAC-G-ACTTTGAAAAGTAAATT
14662281 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
14662323 GCTCCTCTAAACAGAGGCACCACGGACTTTGAAAAGTAAAATT
1 GCTCCTCTAAACAGAGGCACCAC-GACTTTGAAAAGT-AAATT
*
14662366 GCT-CTCTAAATAGAGGCA-CACGGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCAC-G-ACTTTGAAAAGTAAATT
14662407 GCT-CTCTAAACAGAGGCACCACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
14662448 GCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
14662487 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
14662528 GCTCCT
1 GCTCCT
14662534 TGACAATCAT
Statistics
Matches: 394, Mismatches: 9, Indels: 34
0.90 0.02 0.08
Matches are distributed among these distances:
39 36 0.09
40 5 0.01
41 160 0.41
42 136 0.35
43 57 0.14
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:14662299 original size:125 final size:123
Alignment explanation
Indices: 14662072--14662533 Score: 686
Period size: 125 Copynumber: 3.7 Consensus size: 123
14662062 TTTTATCAAA
* * * *
14662072 GCTCCTCTAAATAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATTGCTCCTCTAAACAGAGGCA-CA
* *
14662137 CGACTTTGAAAAATAAATTGCTCATCTAAACAGAGGCACCACGACTTTGGAAAGAGTAAATT
63 CGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAA-AGTAAATT
14662199 GCT-CTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-ACG
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACAC-
14662262 GAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
64 G-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
14662323 GCTCCTCTAAACAGAGGCACCACGGACTTTGAAAAGTAAAATTGCT-CTCTAAATAGAGGCACAC
1 GCTCCTCTAAACAGAGGCACCAC-GACTTTGAAAAGT-AAATTGCTCCTCTAAACAGAGGCACAC
14662387 GGAACTTTGAAAAGTAAATTGCT-CTCTAAACAGAGGCACCACGAACTTT-GAAAAGTAAATT
64 -G-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGTAAATT
14662448 GCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA-CACG
*
14662511 ACTTTGGAAAGTAAATTGCTCCT
65 ACTTTGAAAAGTAAATTGCTCCT
14662534 TGACAATCAT
Statistics
Matches: 315, Mismatches: 9, Indels: 27
0.90 0.03 0.08
Matches are distributed among these distances:
121 27 0.09
122 30 0.10
123 7 0.02
124 12 0.04
125 168 0.53
126 63 0.20
127 8 0.03
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (123 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACACGA
CTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:14663565 original size:8 final size:8
Alignment explanation
Indices: 14663541--14663617 Score: 113
Period size: 8 Copynumber: 9.8 Consensus size: 8
14663531 CCTTGTTAAC
14663541 TTTTTTCA
1 TTTTTTCA
*
14663549 TCATTTTCA
1 T-TTTTTCA
14663558 TTTTTTCA
1 TTTTTTCA
14663566 -TTTTTCA
1 TTTTTTCA
14663573 TTTTTTCA
1 TTTTTTCA
14663581 TTTTTTCA
1 TTTTTTCA
14663589 -TTTTTCA
1 TTTTTTCA
*
14663596 TTTTTCCA
1 TTTTTTCA
14663604 TTTTTTCA
1 TTTTTTCA
14663612 TTTTTT
1 TTTTTT
14663618 TCAAGCATAG
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
7 14 0.23
8 41 0.66
9 7 0.11
ACGTcount: A:0.13, C:0.14, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTTTCA
Found at i:14663570 original size:15 final size:15
Alignment explanation
Indices: 14663541--14663616 Score: 109
Period size: 15 Copynumber: 4.9 Consensus size: 15
14663531 CCTTGTTAAC
14663541 TTTTTTCATCATTTTCA
1 TTTTTTCAT--TTTTCA
14663558 TTTTTTCATTTTTCA
1 TTTTTTCATTTTTCA
14663573 TTTTTTCATTTTTTCA
1 TTTTTTCA-TTTTTCA
14663589 -TTTTTCATTTTTCCA
1 TTTTTTCATTTTT-CA
14663604 TTTTTTCATTTTT
1 TTTTTTCATTTTT
14663617 TTCAAGCATA
Statistics
Matches: 56, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.09
15 23 0.41
16 19 0.34
17 9 0.16
ACGTcount: A:0.13, C:0.14, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTTTCATTTTTCA
Found at i:14663578 original size:23 final size:23
Alignment explanation
Indices: 14663542--14663616 Score: 123
Period size: 23 Copynumber: 3.2 Consensus size: 23
14663532 CTTGTTAACT
*
14663542 TTTTTCATCATTTTCATTTTTTCA
1 TTTTTCAT-TTTTTCATTTTTTCA
14663566 TTTTTCATTTTTTCATTTTTTCA
1 TTTTTCATTTTTTCATTTTTTCA
*
14663589 TTTTTCATTTTTCCATTTTTTCA
1 TTTTTCATTTTTTCATTTTTTCA
14663612 TTTTT
1 TTTTT
14663617 TTCAAGCATA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
23 41 0.84
24 8 0.16
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTTTCATTTTTTCATTTTTTCA
Found at i:14669845 original size:26 final size:26
Alignment explanation
Indices: 14669807--14669856 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14669797 GGCTCAAAAT
*
14669807 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14669833 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
14669857 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14670733 original size:26 final size:26
Alignment explanation
Indices: 14670697--14670749 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14670687 TTGGTCTAAT
14670697 CTTAGACTGGGAATGAATT-TCGTATG
1 CTTAGACTGGGAATGAATTCT-GTATG
* *
14670723 CTTAGATTGGGGATGAATTCTGTATG
1 CTTAGACTGGGAATGAATTCTGTATG
14670749 C
1 C
14670750 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.36
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCTGTATG
Found at i:14671113 original size:26 final size:26
Alignment explanation
Indices: 14671075--14671127 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
14671065 CCAGTCTGAT
** * *
14671075 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACAAGGAAAGAACTCCGTATG
*
14671101 CTTAGACAAGGAAAGCACTCCGTATG
1 CTTAGACAAGGAAAGAACTCCGTATG
14671127 C
1 C
14671128 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAAGGAAAGAACTCCGTATG
Found at i:14672691 original size:26 final size:26
Alignment explanation
Indices: 14672650--14672702 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14672640 TCGGTTTGAT
14672650 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
14672676 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
14672702 C
1 C
14672703 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:14674312 original size:26 final size:26
Alignment explanation
Indices: 14674274--14674326 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14674264 GGCTCAAAAT
*
14674274 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14674300 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14674326 C
1 C
14674327 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14674657 original size:159 final size:153
Alignment explanation
Indices: 14674299--14674692 Score: 405
Period size: 153 Copynumber: 2.5 Consensus size: 153
14674289 AACTCCGTAT
*
14674299 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
1 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
* * * * * * * * *
14674364 TCGGTCGGAGAGGTAGAATGCACAAATCGGGGATTAGCCCGGTCCCCCTTACGTGTTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAACCAGGGATCAACCCGGTCCCCCTTACGTGCTACCGATCC
* * * *
14674429 TGTTGCCACAACCCTCGATCTGA
131 CGCTGCCACAACCCTCCAACTGA
* * * * * * * *
14674452 TCTTAG-ACTAGGAATGAACTCTGTATACATAAGTCAACCCACGAAACGAGCGTGCAGGCACT-A
1 GCTTAGAAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
* * * * * *
14674515 AGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAACCCGGTCCTCCTCTGCGTGCTACCGA
65 A-CCGGCCGGAGAGGCAGAATGCACAAACCAGGGATCAACCCGGTCCCCCT-TACGTGCTACCGA
*
14674580 TCCCGCTGCCACAATCCTCGGTCCAACTGGG
128 TCCCGCTGCCACAA-CC-C--TCCAACT-GA
* * * *
14674611 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAA
1 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
14674676 CCGGCCGGAGAGGCAGA
66 CCGGCCGGAGAGGCAGA
14674693 CTGCGTAAGC
Statistics
Matches: 188, Mismatches: 43, Indels: 14
0.77 0.18 0.06
Matches are distributed among these distances:
152 3 0.02
153 88 0.47
154 22 0.12
155 2 0.01
156 1 0.01
158 5 0.03
159 63 0.34
160 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (153 bp):
GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
CCGGCCGGAGAGGCAGAATGCACAAACCAGGGATCAACCCGGTCCCCCTTACGTGCTACCGATCC
CGCTGCCACAACCCTCCAACTGA
Found at i:14674770 original size:26 final size:26
Alignment explanation
Indices: 14674740--14674819 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
14674730 CTTATGATCT
*
14674740 TAGACTGAGAATGAACTCCGTATGCC
1 TAGACTGAGGATGAACTCCGTATGCC
* * *
14674766 TAGACTGGGGATGAACGCTGTATGCC
1 TAGACTGAGGATGAACTCCGTATGCC
*
14674792 TAGACTGCGGATGAACTCCGTATGCC
1 TAGACTGAGGATGAACTCCGTATGCC
14674818 TA
1 TA
14674820 AGTCAACCCA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGAGGATGAACTCCGTATGCC
Found at i:14675095 original size:12 final size:12
Alignment explanation
Indices: 14675078--14675109 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
14675068 CCCCCCTGCG
14675078 TGCTGTCGGTCC
1 TGCTGTCGGTCC
*
14675090 TGCTGTCGGTGC
1 TGCTGTCGGTCC
14675102 TGCTGTCG
1 TGCTGTCG
14675110 CAACCCTCGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.28, G:0.38, T:0.34
Consensus pattern (12 bp):
TGCTGTCGGTCC
Found at i:14675549 original size:159 final size:157
Alignment explanation
Indices: 14675156--14675552 Score: 381
Period size: 159 Copynumber: 2.5 Consensus size: 157
14675146 AACTCCACAT
* * ** *
14675156 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGTGCTCTA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTC-A
* * * * * * **
14675221 CCGATCGAAA-AGGTAGAATGCACAAGTCGGGGATCGGCCCAATCCCCTTACGTACTGTCGATCC
65 CCGAACCAAAGAGGCAGAATGCACAAGCCGGGGAGCGACCCAATCCCCTTACGTACTACCGATCC
** * *
14675285 TGCTACCACAACCCTCAGTCTGGTCTGA
130 CACTACCACAACCCTCAGTCTCGACTGA
* *** * *
14675313 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAATTAACTCACA-AAACGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCA-AGAAACGAGCGTGCGGGCGCTC
** * * * *
14675376 AGCCG-ACCTGAGAGGCATAATGCACAAGCCGGGGAGCGACCCGATCCCCCTCTGCGTGCTACCG
64 A-CCGAACCAAAGAGGCAGAATGCACAAGCCGGGGAGCGACCCAAT-CCCCT-TACGTACTACCG
* * *
14675440 GTCCCACTACCACAACCCTCGGT-TCGACTGGG
126 ATCCCACTACCACAACCCTCAGTCTCGACT-GA
* * *
14675472 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAC
14675537 CGAACCAAAGAGGCAG
66 CGAACCAAAGAGGCAG
14675553 GATGTGCAAG
Statistics
Matches: 186, Mismatches: 44, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
156 4 0.02
157 79 0.42
158 12 0.06
159 90 0.48
160 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAC
CGAACCAAAGAGGCAGAATGCACAAGCCGGGGAGCGACCCAATCCCCTTACGTACTACCGATCCC
ACTACCACAACCCTCAGTCTCGACTGA
Found at i:14676612 original size:159 final size:159
Alignment explanation
Indices: 14676321--14676613 Score: 340
Period size: 159 Copynumber: 1.8 Consensus size: 159
14676311 ACGTGCTGTG
* *
14676321 GATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGTGAATGAACTCCGTATACATAA
1 GATCCTGCTACCACAACCCTTGGTCCGGTCTGAGCTTAGACTGTGAATGAACTCCGTATACATAA
* * * * * * ** *
14676386 GTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAACGCGTAAGTCGAGG
66 GCCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAGAACGCACAAGCCGAGG
14676451 ATTGGCCCGATCCCCCTCTACATGCTGCC
131 ATTGGCCCGATCCCCCTCTACATGCTGCC
* * * * * *
14676480 GATCCTGCTGCCACAACCCTTGGTCTGG-CTGGGGCTTAGACATG-GAATGAACTCCTTATGCCT
1 GATCCTGCTACCACAACCCTTGGTCCGGTCT-GAGCTTAGAC-TGTGAATGAACTCCGTATACAT
* * * *
14676543 AAGCCAACCCATGAAACAG-GCGTGCGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCG
64 AAGCCAACCCACGAAA-AGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAGAACGCACAAGCCG
*
14676607 GGGATTG
128 AGGATTG
14676614 ACTCGGTCTC
Statistics
Matches: 109, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 2 0.02
159 104 0.95
160 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
GATCCTGCTACCACAACCCTTGGTCCGGTCTGAGCTTAGACTGTGAATGAACTCCGTATACATAA
GCCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAGAACGCACAAGCCGAGG
ATTGGCCCGATCCCCCTCTACATGCTGCC
Found at i:14677360 original size:158 final size:158
Alignment explanation
Indices: 14677060--14677360 Score: 343
Period size: 158 Copynumber: 1.9 Consensus size: 158
14677050 TCTTAGGCTG
* * * * * * * * *
14677060 GGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAGCTGGCCAAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAAAG
* * * *
14677125 AGGCATAATGTGCAAGCCGGGGATCGGCCGGTCCCCCTCTGCGTGCTATCGATCCCACTGCCACA
66 AGGCAGAATGCGCAAACCGGGGAACGGCCGGTCCCCCTCTGCGTGCTATCGATCCCACTGCCACA
* *
14677190 ACTCTCGGTCCGACTGGGGCTTAGACAT
131 ACCCTCGATCCGACTGGGGCTTAGACAT
* * **
14677218 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGATCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAAAG
* * * * ** **
14677283 AGGTAGAATGCGCAAACTGGGGAACGGCCCGGTTCCCCT-TGCGTGCTTTCGATCCTGCTGCCGT
66 AGGCAGAATGCGCAAACCGGGGAACGG-CCGGTCCCCCTCTGCGTGCTATCGATCCCACTGCCAC
14677347 AACCCTCGATCCGA
130 AACCCTCGATCCGA
14677361 TTTTATCTTA
Statistics
Matches: 115, Mismatches: 27, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
158 105 0.91
159 10 0.09
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAAAG
AGGCAGAATGCGCAAACCGGGGAACGGCCGGTCCCCCTCTGCGTGCTATCGATCCCACTGCCACA
ACCCTCGATCCGACTGGGGCTTAGACAT
Found at i:14677397 original size:26 final size:26
Alignment explanation
Indices: 14677367--14677422 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
14677357 CCGATTTTAT
* *
14677367 CTTAGAC-TGGGAATGAACTCCGAATG
1 CTTAGACAT-GGAATAAACTACGAATG
*
14677393 CTTAGACATGGAATAAACTACGTATG
1 CTTAGACATGGAATAAACTACGAATG
14677419 CTTA
1 CTTA
14677423 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTACGAATG
Found at i:14677579 original size:26 final size:26
Alignment explanation
Indices: 14677550--14677602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14677540 CTGGTCCGAT
*
14677550 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAAATCCGTATG
*
14677576 CTTAGACATGGAATTAAATCCGTATG
1 CTTAGACATGGAATGAAATCCGTATG
14677602 C
1 C
14677603 CTAAGCGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:14677652 original size:183 final size:183
Alignment explanation
Indices: 14677208--14677652 Score: 502
Period size: 183 Copynumber: 2.4 Consensus size: 183
14677198 TCCGACTGGG
* * * * * *
14677208 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATTAAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * *
14677273 CCGATCGGAGAGGTAGAATGCGCAAACTGGGGAACGGCCCGGTTCCCCTTGCGTGCTTTCGATCC
66 CCGGTCGGAGAGGTAGAAT-CGCAAACTCAGGAACGACCCGGTTCCCCTTACGTGCTTTCGATCC
* * *** *
14677338 TGCTGCCGTAACCCTCGATCCGATTTTATCTTAGACTGGGAATGAACTCCGAAT
130 TGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGAAT
* * * *
14677392 GCTTAGACATGGAA-TAAACTACGTATGCTTAAGCCAACCCACGAAACAAGCGTGCGGGCACTAA
1 GCTTAGACATGGAATTAAA-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * ** * *
14677456 GCCGGTTGGAGAGGTAGAAT-GCATAAGTCAGGATTGACCCGGTTTCCCC-TACTTG-TTGTTGA
65 GCCGGTCGGAGAGGTAGAATCGCA-AACTCAGGAACGACCCGG-TTCCCCTTACGTGCTT-TCGA
* * *
14677518 TCCTGCTACCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
127 TCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGAAT
* * *
14677575 GCTTAGACATGGAATTAAATCCGTATGCCTAAGCGAACCCACGAAATGAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATTAAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
14677640 CTGGCCGGAGAGG
66 CCGGTCGGAGAGG
14677653 CTGGCCGAAG
Statistics
Matches: 216, Mismatches: 40, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
182 5 0.02
183 132 0.61
184 79 0.37
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATTAAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGTCGGAGAGGTAGAATCGCAAACTCAGGAACGACCCGGTTCCCCTTACGTGCTTTCGATCCT
GCTACCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGAAT
Found at i:14677946 original size:26 final size:26
Alignment explanation
Indices: 14677917--14677969 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14677907 CTAGTCTGAT
*
14677917 CTTAAAC-TGAGAATGAACTCTGTATG
1 CTTAAACATG-GAATGAACTCCGTATG
*
14677943 CTTAGACATGGAATGAACTCCGTATG
1 CTTAAACATGGAATGAACTCCGTATG
14677969 C
1 C
14677970 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTATG
Found at i:14681575 original size:17 final size:17
Alignment explanation
Indices: 14681553--14681592 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
14681543 TTCCAGCCAT
*
14681553 TGGAGTAGCGTGAGGAG
1 TGGAGTAGCGCGAGGAG
*
14681570 TGGAGTAGCGCGGGGAG
1 TGGAGTAGCGCGAGGAG
14681587 TGGAGT
1 TGGAGT
14681593 TGCAACTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.20, C:0.07, G:0.55, T:0.17
Consensus pattern (17 bp):
TGGAGTAGCGCGAGGAG
Found at i:14685926 original size:159 final size:158
Alignment explanation
Indices: 14685537--14686038 Score: 437
Period size: 158 Copynumber: 3.2 Consensus size: 158
14685527 GGCTCAAAAT
* * *
14685537 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAGC
* ** * * * **
14685602 CGGCCGGAGAGATAGAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTACATGCTGTCGATCTT
66 CGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGATCCCCCCTACATGCTGCCGATCCC
* * *
14685667 GTTGTCTCAACCCTCAGTCCGGTCTGAT
131 GCTGCCTCAACCCTCAGTCCGGTCTGAG
* * * * *
14685695 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGCGTGCGAGCGCTGA-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GTGTGCGGGCGCTCAG
* * * *
14685758 CCAGGCCGAAGAGGCATAATGCGCAAG-CTAGGGATTGGCCCGATCCCACTCTGA-GTGTTGCCG
65 CC-GGCCGAAGAGGCAGAATGCGCAAGTC-AGGGATTGGCCCGATCCC-CCCT-ACATGCTGCCG
* *
14685821 GTCCCGCTGCCAT-AACCCTCTA-TCCGG-CTGGGG
126 ATCCCGCTGCC-TCAACCCTC-AGTCCGGTCT-GAG
* *
14685854 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAG
* * * * * * * * * * * **
14685918 CCGACCGAAGAGGTAGAATGTGCAGGCCTGGGATCGGCCTGGTCCTCCCTGCATGCTGTTGATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGATCCCCCCTACATGCTGCCGATCC
* * * * * *
14685983 TGCGGTCGCAACCCTC-GTTTCGGTCTGAT
130 CGCTGCCTCAACCCTCAG-TCCGGTCTGAG
14686012 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14686039 TTAGGCTGGG
Statistics
Matches: 269, Mismatches: 57, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
157 4 0.01
158 143 0.53
159 114 0.42
160 8 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGATCCCCCCTACATGCTGCCGATCCC
GCTGCCTCAACCCTCAGTCCGGTCTGAG
Found at i:14686048 original size:26 final size:26
Alignment explanation
Indices: 14686012--14686067 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14686002 TCGGTCTGAT
*
14686012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
14686038 CTTAGGCTGGGCATGAACTCCATTTG
1 CTTAGACTGGGAATGAACTCCATATG
14686064 CTTA
1 CTTA
14686068 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14686123 original size:13 final size:14
Alignment explanation
Indices: 14686105--14686133 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14686095 CACTCAGCCG
14686105 ATCGGAGAGGC-TA
1 ATCGGAGAGGCATA
14686118 ATCGGAGAGGCATA
1 ATCGGAGAGGCATA
14686132 AT
1 AT
14686134 GCACAAGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.34, C:0.14, G:0.34, T:0.17
Consensus pattern (14 bp):
ATCGGAGAGGCATA
Found at i:14686854 original size:26 final size:26
Alignment explanation
Indices: 14686803--14686855 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14686793 TCGGTCTGAT
* *
14686803 CTTAGACTGGGAATGAACTTCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
14686829 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
14686855 C
1 C
14686856 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14687273 original size:26 final size:26
Alignment explanation
Indices: 14687235--14687287 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14687225 TCGATCCGAA
14687235 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14687261 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
14687287 C
1 C
14687288 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14687982 original size:26 final size:26
Alignment explanation
Indices: 14687944--14687996 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14687934 CCGGTTTGAT
14687944 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
14687970 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGA-ATGGGAATGAACTCTGTATG
14687996 C
1 C
14687997 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:14688547 original size:13 final size:13
Alignment explanation
Indices: 14688529--14688568 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
14688519 GGGCGCTCAA
*
14688529 CCGATCAGAGAGG
1 CCGATCGGAGAGG
14688542 CCGATCGGAGAGG
1 CCGATCGGAGAGG
14688555 CCGATCGGAGAGG
1 CCGATCGGAGAGG
14688568 C
1 C
14688569 ACAATGCACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.42, T:0.07
Consensus pattern (13 bp):
CCGATCGGAGAGG
Found at i:14689198 original size:26 final size:26
Alignment explanation
Indices: 14689162--14689234 Score: 101
Period size: 27 Copynumber: 2.8 Consensus size: 26
14689152 CTGATCTGAT
* * *
14689162 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGGATGAACTCCACATG
*
14689188 CTTAGACTGGGGATGAAACTCCATATG
1 CTTAGACTGGGGATG-AACTCCACATG
14689215 CTTAGACTGGGGATGAACTC
1 CTTAGACTGGGGATGAACTC
14689235 TATATGCCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 19 0.45
27 23 0.55
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCACATG
Found at i:14689215 original size:27 final size:26
Alignment explanation
Indices: 14689162--14689241 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
14689152 CTGATCTGAT
* * **
14689162 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGGATGAACTCCATATG
14689188 CTTAGACTGGGGATGAAACTCCATATG
1 CTTAGACTGGGGATG-AACTCCATATG
*
14689215 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGGATGAACTCCATATG
14689241 C
1 C
14689242 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.52
27 23 0.48
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:14691131 original size:26 final size:26
Alignment explanation
Indices: 14691095--14691147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14691085 CTGGTCTGAT
*
14691095 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14691121 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14691147 C
1 C
14691148 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14692210 original size:26 final size:26
Alignment explanation
Indices: 14692159--14692211 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14692149 CCGATTTGAT
* *
14692159 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14692185 CTTAGACTAGGTATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
14692211 C
1 C
14692212 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14692467 original size:196 final size:197
Alignment explanation
Indices: 14692155--14692514 Score: 467
Period size: 196 Copynumber: 1.8 Consensus size: 197
14692145 CAGTCCGATT
* *
14692155 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGTATGAACTCTATATGCCTAAGTCA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTATATGCCTAAGCCA
* * * *
14692220 ACCCACGATACAAGCGTGCGGGCACTCAACCGACTGGAGAGGTAAAATGCGTAAG-TCGAGGATC
66 ACCCACGAAACAAGCGTGCGAGCACTCAACCGACTGAAGAGGCAAAATGCGTAAGCT-GAGGATC
*
14692284 GACCCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTGTTGGTCCTGCTACCGCCAACCTCGATTTG
130 GACCCGATCCCCCCCTACGTGCTGTCGATCCTGCTGTTGGTCCTGCTACCGCCAACCTCGATTTG
14692348 GTC
195 GTC
* * **
14692351 TGATCTTAGTCTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCTGTATGTGTAAGCC
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCTATATGCCTAAGCC
* * ** * * * *
14692415 AACCCACGAAACGAGTGTGCGAGTGCTCAGCC-AGTCGAAGAGGCAGAATGCGTAAGCTGGGGAT
65 AACCCACGAAACAAGCGTGCGAGCACTCAACCGACT-GAAGAGGCAAAATGCGTAAGCTGAGGAT
* * *
14692479 CGATCCGGTCCCCCCCTACGTGCTGTGGATCCTGCT
129 CGACCCGATCCCCCCCTACGTGCTGTCGATCCTGCT
14692515 ACCGCAACCC
Statistics
Matches: 138, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
195 3 0.02
196 110 0.80
197 25 0.18
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.24
Consensus pattern (197 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTATATGCCTAAGCCA
ACCCACGAAACAAGCGTGCGAGCACTCAACCGACTGAAGAGGCAAAATGCGTAAGCTGAGGATCG
ACCCGATCCCCCCCTACGTGCTGTCGATCCTGCTGTTGGTCCTGCTACCGCCAACCTCGATTTGG
TC
Found at i:14693350 original size:368 final size:366
Alignment explanation
Indices: 14692672--14693423 Score: 886
Period size: 368 Copynumber: 2.0 Consensus size: 366
14692662 GCCAGTCCCA
* * *
14692672 CTGCCACAACCCTTAGTTTCGGTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCC-TCGGTTCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
** * * * * * *
14692737 CATGAAACGGGCGTACGATCGCTCAGCCGGCCGGAGTGGCAGAATGCGTAAGCCAGGGATCGGTC
65 CACAAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGAGGCAGAATACGCAAGCCAGGGATCGGTC
* * * * *
14692802 CGGTCCCCCTTGCATGCTGTCGATCCTGCTGCTGCAACCTTTGATCCGATCTGATCTTAGACTGG
130 CGATCCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGATCTGATCTTAGACTGG
*** * * *
14692867 GAATGAACTTTGTATGCTTAGACTGGGGATGACCTCCATATGCCTAAGTGAACCCATGAAACCAG
195 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATAAAACCAG
* * ** * *
14692932 CGTGCGGGTGCTCAGTCGGTCGGAGAGGCCGGTCAGAGAGACATAATGCACAAATCGAGGATC-A
260 CGTGCGGGCGCTCAGTCGGTCGAAGAGGCCGACCAGAGAGACAGAATGCACAAACCGAGGATCGA
*
14692996 GCTCGATCCACCTCTGCGTGCTGCCGATCCCGCT-GTCGGTCCTG
325 -CTCGATCCACC-CTGCGTGCTGCCGATCCCGCTCCT-GGTCCTG
***
14693040 CTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTTCG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
14693105 CACAAAATGAGCGTGCGAGCGCTCAGCCGGTCAGAGAGGCAGAATATGCAAGTC-GAGGATCGGT
65 CACAAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGAGGCAGAATACGCAAGCCAG-GGATCGGT
14693169 CCGATCCCCCCTACATGCTGTCGATCCTGCTG-TCGCAACCCTCGATCCGAT-TCGATCTTAGAC
129 CCGATCCCCCCTACATGCTGTCGATCCTGCTGCT-GCAACCCTCGATCCGATCT-GATCTTAGAC
** * *
14693232 TGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAATTCAACCCATAAAAT
192 TGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATAAAAC
* * * ** * *
14693297 TAGTGTGCGGGCGTTCAGTCGG-CTGAAGAGGCCGACCAGAGAGGTAGAATGCACAAGCCGGGGA
257 CAGCGTGCGGGCGCTCAGTCGGTC-GAAGAGGCCGACCAGAGAGACAGAATGCACAAACCGAGGA
* * * * *
14693361 TCGACTTGATCCGCCCTGTGTGCTGTCGATCCTGCTCCTGGTCCTG
321 TCGACTCGATCCACCCTGCGTGCTGCCGATCCCGCTCCTGGTCCTG
* *
14693407 CTGTCGCAACCCTCGGT
1 CTGCCACAACCCTCGGT
14693424 CTGGTCTGAT
Statistics
Matches: 322, Mismatches: 55, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
367 50 0.16
368 271 0.84
369 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (366 bp):
CTGCCACAACCCTCGGTTCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACAAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGAGGCAGAATACGCAAGCCAGGGATCGGTCC
GATCCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGATCTGATCTTAGACTGGG
AATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATAAAACCAGC
GTGCGGGCGCTCAGTCGGTCGAAGAGGCCGACCAGAGAGACAGAATGCACAAACCGAGGATCGAC
TCGATCCACCCTGCGTGCTGCCGATCCCGCTCCTGGTCCTG
Found at i:14693993 original size:26 final size:26
Alignment explanation
Indices: 14693956--14694006 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14693946 CGGTCTGATC
14693956 TTAGACTGGGAAAGAACTCCATATGG
1 TTAGACTGGGAAAGAACTCCATATGG
* *
14693982 TTAGACAT-GGAATGAACTCCTTATG
1 TTAGAC-TGGGAAAGAACTCCATATG
14694007 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCATATGG
Found at i:14695629 original size:158 final size:162
Alignment explanation
Indices: 14695349--14695641 Score: 387
Period size: 158 Copynumber: 1.8 Consensus size: 162
14695339 CCCTCGATCC
* **
14695349 GGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGTG
1 GGTCTAATCCTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCAC-AAACAAGTGACCGTG
** ** *
14695414 CGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCAAGGATCAGCCCAGTCCCCC-CTGCG
65 CGGGCACTCAGCCGACCAAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCAGTCCCCCTCTGCG
14695478 TGCTGTCGATGCTACTGCCGTAACCCTCAGTCT
130 TGCTGTCGATGCTACTGCCGTAACCCTCAGTCT
* * * *
14695511 GGTCTGATCCTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCA-AGA-AA-TGACCGTGC
1 GGTCTAATCCTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAACAAGTGACCGTGC
* * * * * *
14695573 GGGCATTGAGCCGACCAAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCTCTGTGT
66 GGGCACTCAGCCGACCAAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGT
14695638 GCTG
131 GCTG
14695642 CCAGTCTCGC
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
158 55 0.49
159 11 0.10
160 2 0.02
162 44 0.39
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (162 bp):
GGTCTAATCCTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAACAAGTGACCGTGC
GGGCACTCAGCCGACCAAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGT
GCTGTCGATGCTACTGCCGTAACCCTCAGTCT
Found at i:14695731 original size:159 final size:157
Alignment explanation
Indices: 14695337--14695862 Score: 438
Period size: 159 Copynumber: 3.3 Consensus size: 157
14695327 CTGCTACTGA
* *
14695337 AACCCTC-GATCCGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
1 AACCCTCAG-TCCGGTCTGAGCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
** ** * * *
14695401 ACAAGTGTGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCAAGGATCAGCCCA
65 AC--G-G-GCGTGCGGGCA-TCAGCCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCA
* **
14695466 GTCCCCCCTGCGTGCTGTCGATGCTACTGCCGT
125 GTCCCCCCTGCGTGCTGCCGATGCTACTGCCAC
* * * * * *
14695499 AACCCTCAGTCTGGTCTGATCCTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAAGAAA
1 AACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
* ** * *
14695564 TGACCGTGCGGGCATTGAGCCGACCAAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAGTCCC
66 CGGGCGTGCGGGCA-TCAGCCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCC
* *
14695629 CCTCTGTGTGCTGCC-A-GTCTCGCTGCCAC
130 CC-CTGCGTGCTGCCGATG-CT-ACTGCCAC
* * * *
14695658 AACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 AACCCTCAGTCCGGTCT-GAGCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGA
* * * ***
14695721 AACGGGCGTGCAGGTGC-TCAACC-AGCCAAAGAGGTAGAATGCGCAAGCCGGGGATCGGCTTGG
64 AACGGGCGTGC-GG-GCATCAGCCGA-CCAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAG
** * ** *
14695784 TCCCCCCTGCGTGCTATCGATCCTACTATCGC
126 TCCCCCCTGCGTGCTGCCGATGCTACTGCCAC
* * * * *
14695816 AACCTTTAGTTCGGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGC
1 AACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTTC-GTATGC
14695863 TTAGACTGGG
Statistics
Matches: 288, Mismatches: 62, Indels: 32
0.75 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 104 0.36
159 117 0.41
160 4 0.01
161 2 0.01
162 57 0.20
163 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
AACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCGGGCATCAGCCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCC
CCTGCGTGCTGCCGATGCTACTGCCAC
Found at i:14695872 original size:26 final size:26
Alignment explanation
Indices: 14695836--14695888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14695826 TCGGTCCGAT
14695836 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14695862 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14695888 C
1 C
14695889 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14696606 original size:539 final size:534
Alignment explanation
Indices: 14695862--14696976 Score: 1304
Period size: 538 Copynumber: 2.1 Consensus size: 534
14695852 ACTCTGTATG
* * * * *
14695862 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTCAGT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTACGGGCACTCAGC
* * * *
14695927 CAACCGGAGAAGTCGGTCGAAGAGGCATAATGCACAAGCCGGGGATCAACCCAGTTCCCTCTACA
65 CAACCGAAGAAGCCGATCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCAGTTCCCTCTACA
* * ** *
14695992 TGCTGTCGATCCGGTTATCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
130 TGCTGTCGATCCCGTTACCACTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTACACATGGA
* * * * * * ** *
14696057 ATGAACTCTGTATGCCTAAGCCAACCCAAGAAATGAGCGTGTGGCTGTTGAGCCGGTAGGAAAGG
195 ATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGCGGCTAAACCGACAGAAAAGG
* * * * *
14696122 CAGAATGCGCAAGTTGGGGAACGGCTCGGTCCCCCCTGTGTGCTACCGATCCTACTGTTGGTCCT
260 CAGAATACGCAACTCGGGGAACGGCTCGGTCCCCCCTGCGAGCTACCGATCCTACTGTTGGTCCT
* * * * * *
14696187 GC-AGTCGTAACCCTCGGT-TCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAGACAT
325 GCTA-TCGCAAACCTCGATCT-AGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAGACAT
*
14696250 GGAATGAACTACATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAACCAGCCATTA
387 GGAATGAACTACATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAACCAGCCA-GA
* * * * * * *
14696315 -AGAAAGAATGCGCAAGTCGGGGGCTAACCCGATCCCCTCCTGCGTGCTGTCGATCCT-GCTACC
451 GAGAAAGAATGCACAAGCCAGGGACCAACCCGAT-CCC-CCTGCGTGCTATCGAT-CTAGATACC
*
14696378 ATAACCCTCAGTCCGGTCCGAT
513 ACAACCCTCAGTCCGGTCCGAT
* ** *
14696400 CTTAGACTGGTAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCGCTC-GA
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTACGGGCACTCAG-
** * * **
14696464 CCGGCCGAAGAGGCCGATCGAATAGGCATAATGCACAAGCCGAGGATCAACCTGGTCTCCCTCTA
64 CCAACCGAAGAAGCCGATCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCAGT-TCCCTCTA
* * ** *
14696529 CGTGCTGTCGATCCCGTTGCCACTCCTGCTGTGACAACCCTCGGTCTGACTGGGGCTTACACATG
128 CATGCTGTCGATCCCGTTACCACTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTACACATG
* * *
14696594 GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGGCTAAACCGACCGAAAA
193 GAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGCGGCTAAACCGACAGAAAA
* ** * ** **
14696659 GGTAGAATACGCAACTCGGGGATTGGCTCGGTCCCCCTTGCGAGCTGTCGATCCTGGTGTTGGTC
258 GGCAGAATACGCAACTCGGGGAACGGCTCGGTCCCCCCTGCGAGCTACCGATCCTACTGTTGGTC
* *
14696724 CTGCTATCGCAAACCTCGATCTGGTCCAATCTTAGACTGGAATGAACTCCGTATGCTTAGACATG
323 CTGCTATCGCAAACCTCGATCTAGTCCAATCTTAGACTGGAATGAACTCCGTATGCCTAGACATG
* * * * * *
14696789 GAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGA
388 GAATGAACTACATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAACCAGCCAGAGA
** * * * * * *
14696854 GCCAGAATGCATAAGCCAGGGACCGACCCGGTCCCCCTGTGTGCTATCGATCTAGATGCCGCAAC
453 GAAAGAATGCACAAGCCAGGGACCAACCCGATCCCCCTGCGTGCTATCGATCTAGATACCACAAC
* *
14696919 CCTCGGTCTGGTCCGAT
518 CCTCAGTCCGGTCCGAT
14696936 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCAC
14696977 TAAACGAGCG
Statistics
Matches: 481, Mismatches: 88, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
535 2 0.00
536 73 0.15
537 9 0.02
538 199 0.41
539 196 0.41
540 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (534 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTACGGGCACTCAGCC
AACCGAAGAAGCCGATCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCAGTTCCCTCTACAT
GCTGTCGATCCCGTTACCACTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTACACATGGAA
TGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGCGGCTAAACCGACAGAAAAGGC
AGAATACGCAACTCGGGGAACGGCTCGGTCCCCCCTGCGAGCTACCGATCCTACTGTTGGTCCTG
CTATCGCAAACCTCGATCTAGTCCAATCTTAGACTGGAATGAACTCCGTATGCCTAGACATGGAA
TGAACTACATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAACCAGCCAGAGAGAA
AGAATGCACAAGCCAGGGACCAACCCGATCCCCCTGCGTGCTATCGATCTAGATACCACAACCCT
CAGTCCGGTCCGAT
Found at i:14696793 original size:26 final size:25
Alignment explanation
Indices: 14696754--14696805 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14696744 CTGGTCCAAT
14696754 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
14696779 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
14696805 C
1 C
14696806 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:14697302 original size:25 final size:26
Alignment explanation
Indices: 14697254--14697306 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
14697244 AGTCTGATCT
14697254 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* **
14697280 TAGAC-GGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
14697305 TA
1 TA
14697307 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:14697685 original size:26 final size:26
Alignment explanation
Indices: 14697647--14697699 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14697637 GGCTCAAACT
14697647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14697673 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14697699 C
1 C
14697700 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14698077 original size:13 final size:13
Alignment explanation
Indices: 14698059--14698083 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14698049 GGTGCTCAGT
14698059 CGACCAGAGAGGC
1 CGACCAGAGAGGC
14698072 CGACCAGAGAGG
1 CGACCAGAGAGG
14698084 TAGAATACGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
CGACCAGAGAGGC
Found at i:14698574 original size:26 final size:26
Alignment explanation
Indices: 14698545--14698597 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14698535 CCAGTCTGAT
*
14698545 CTTAGAC-TGAGAATGAACTCTGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
14698571 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14698597 C
1 C
14698598 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14699060 original size:26 final size:25
Alignment explanation
Indices: 14699024--14699102 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
14699014 CCGGTCTGAT
14699024 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGG-ATGAACTCCATATG
14699050 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACT-GGGATGAACTCCATATG
14699076 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACT-GGGATGAACTCCATATG
14699102 C
1 C
14699103 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCATATG
Found at i:14699455 original size:26 final size:26
Alignment explanation
Indices: 14699417--14699469 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14699407 CCGGTCTGAT
*
14699417 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14699443 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14699469 C
1 C
14699470 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14699797 original size:159 final size:158
Alignment explanation
Indices: 14699443--14699872 Score: 445
Period size: 159 Copynumber: 2.7 Consensus size: 158
14699433 ACTTCGTATG
* * * *
14699443 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGGGGGCGATTTGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAG-
* * * * *
14699508 CCGTCGGAGAGGCAGAATGCACAAGCCGGGGA-CTGGTCCGATCCCCC-CTACGTGCTGACGATC
65 TCGGCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGATCCCCCTCTACGTGCTGACGATC
* * *
14699571 CTGCTACCGCAACCCTCGATCTGATCCAAT
129 CCGCTACCACAACCCTCGATCAGATCCAAT
* * * * * *
14699601 CTTAAAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAATGAGCGTCCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAG
* * * *
14699665 TCGGCCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTC
65 TCGG-CGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGACGATC
* * ***
14699730 CCGCTACCACAACTCTCGATCCAGCTGGGA-
129 CCGCTACCACAACCCTCGAT-CAGATCCAAT
* * * *
14699760 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGT
* * ** * *
14699825 CGGCTAGATAGGCAGAATGCGCAAGTTGGGGATCGACCCGGTCCCCCT
66 CGGCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT
14699873 GCGTGCTGTT
Statistics
Matches: 220, Mismatches: 45, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 90 0.41
159 122 0.55
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGT
CGGCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGACGATCCC
GCTACCACAACCCTCGATCAGATCCAAT
Found at i:14699958 original size:26 final size:26
Alignment explanation
Indices: 14699917--14699969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14699907 CCAGTCCGTT
*
14699917 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14699943 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14699969 C
1 C
14699970 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14700835 original size:34 final size:34
Alignment explanation
Indices: 14700783--14700850 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
14700773 CCCCTCTACG
* * *
14700783 TGCTGCCGATCCCGCTACCACAACCCTCGATCCA
1 TGCTACCGATCCCACTACCACAACCCTCAATCCA
* **
14700817 TGCTACCGATCCTACTACCGTAACCCTCAATCCA
1 TGCTACCGATCCCACTACCACAACCCTCAATCCA
14700851 GTTCGATCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.24, C:0.44, G:0.12, T:0.21
Consensus pattern (34 bp):
TGCTACCGATCCCACTACCACAACCCTCAATCCA
Found at i:14700899 original size:26 final size:26
Alignment explanation
Indices: 14700858--14700910 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14700848 CCAGTTCGAT
*
14700858 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
14700884 CTTAGACT-GGAGATGAACTCAGTATG
1 CTTAGACTAGGA-ATGAACTCAGTATG
14700910 C
1 C
14700911 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:14701541 original size:26 final size:26
Alignment explanation
Indices: 14701505--14701557 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14701495 CTAGTTTAAT
*
14701505 CTTAGATTGGGAATGA-ACTCCGTATG
1 CTTAGACTGGGAAT-ATACTCCGTATG
*
14701531 CTTAGACTGGGGATATACTCCGTATG
1 CTTAGACTGGGAATATACTCCGTATG
14701557 C
1 C
14701558 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATATACTCCGTATG
Found at i:14702076 original size:658 final size:647
Alignment explanation
Indices: 14700831--14702100 Score: 1473
Period size: 658 Copynumber: 1.9 Consensus size: 647
14700821 ACCGATCCTA
*
14700831 CTACCGTAACCCTCAATCCAGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAG
1 CTACCGTAACCCTCAATCCAGTTCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAG
* * * *
14700896 ATGAACTCAGTATGCCTAAGTCAACCCATGAAACAAGAGTGCAGGCACTCAACCGGTCAGAGAGG
66 ATGAACTCAGTATGCCTAAGTCAACCCATGAAACAAGAGTACAGGCACTCAACCGATCAAAGAAG
* * *
14700961 CCAATCGGAGAGGCAGAATGCGCAAGTCAAGGATCGGTCTGGGCCCCCCTACATGCTTCTGATCC
131 CCAATCGGAGAGGCAAAATGCGCAAGCCAAGGATCGCTCTGGGCCCCCCTACATGCTTCTGATCC
* ** * *
14701026 TACCGCTGGTCCTGCTGCCACAACCTTTGGTCCGGTTCGATCTTAGATTGGGAATGAACTTTGGA
196 TACCGCTGGTCCTGCTGCCACAACCCTCAGTCCGATTCGATCTTAGATTGGGAATGAACTCTGGA
* ** *
14701091 TGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCA
261 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * *
14701156 GTCGATCGGAGAGGTAGAATGTACAAGCCGAGGATCAGCCTGATCTACTCCTACATGCTGTCAAT
326 GTCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCCTGATCTACCCCTACATGCTGTCAAT
* * * ** *
14701221 CTGCTACTACAATCCTCGATCCGATCTTAGACTGGGAATGAGCTCCGTGTGCCTAAGACAAACCA
391 CTGCTACCACAATCCTCGATCCAATCTTAAACTAAGAATGAGCTCCGTATGCCTAAGACAAACCA
* * *
14701286 CGAAACGAGCGTTCGGGCACTGAGTCGACCGAAGAGGCATAATGCGTATGCCAGTGATCGACCCG
456 CGAAACGAGCGTTCGGGCACTGAGTCCACCGAAGAGGCATAATGCGCAAGCCAGTGATCGACCCG
* * *
14701351 ATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGG
521 ATCCCCCTCTGCGTGCTATCAGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGG
*
14701416 AATGAACTCGCTATGCCTAACCCAACCATAAAGGCAGAAGCCGAATATCGGCCCAATCCTTC
586 AATGAACTCCCTATGCCTAACCCAACCATAAAGGCAGAAGCCGAATATCGGCCCAATCCTTC
* * * * *
14701478 CTACCGTAACCCTCAATCTAGTTTAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGG
1 CTACCGTAACCCTCAATCCAGTTCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAG
* * * * *
14701543 AT-ATACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCCCTCAACCGATCAAAGAA
66 ATGA-ACTCAGTATGCCTAAGTCAACCCATGAAACAAGAGTACAGGCACTCAACCGATCAAAGAA
* ** * ** * *
14701607 GTCGGTCGGAGAGGCAAAATGTGCAAGCCGTGGATCAGCTC-GGGCCTCCTTACATGCTGTC-GA
130 GCCAATCGGAGAGGCAAAATGCGCAAGCCAAGGATC-GCTCTGGGCCCCCCTACATGCT-TCTGA
** *
14701670 TCCTATTGCTGGTCCTACTGTCGATCCTGCTGCAGTAACCCTCAGTCCGATTCGATCTTAGATT-
193 TCCTACCGCTGGT-C--C--T-G---CTGC--CA-CAACCCTCAGTCCGATTCGATCTTAGATTG
* *
14701734 GGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
246 GGAATGAACTCTGGATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * * *
14701799 GCGTACGGGCGTTCAGTCTG-CCAGAGAGGCAGAATGCACAAGTCGGGGATC-GGCTAGATC-CC
311 GCGTACGGGCGCTCAGTC-GACCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCCT-GATCTAC
* * * * * *
14701861 CCCTGCGTGCTGTCGATCCTGCTGCCACAATCTTTGATCCAATCTTAAA-TCAAGAATGAGCTCC
374 CCCTACATGCTGTCAAT-CTGCTACCACAATCCTCGATCCAATCTTAAACT-AAGAATGAGCTCC
* * * * * * *
14701925 GTATGCCTAAGACAACCCATGAAATGAGCGTTTGGGCGGC-GAG-CCAGCTAGAGAGGCATAATG
437 GTATGCCTAAGACAAACCACGAAACGAGCGTTCGGGC-ACTGAGTCCACCGA-AGAGGCATAATG
* * * * * * * *
14701988 CGCAAGTCGGTGATCGGCTCGGTCCCCCTCTGCGTGCTATCAGTCTCGTTGCCACAGCCCAT-GG
500 CGCAAGCCAGTGATCGACCCGATCCCCCTCTGCGTGCTATCAGTCCCGCTGCCACAACCC-TCGG
* * * *
14702052 TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
564 TCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACC
14702101 CATGAAATGG
Statistics
Matches: 513, Mismatches: 88, Indels: 33
0.81 0.14 0.05
Matches are distributed among these distances:
646 1 0.00
647 168 0.33
648 6 0.01
650 1 0.00
652 1 0.00
653 1 0.00
656 4 0.01
657 22 0.04
658 282 0.55
659 27 0.05
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (647 bp):
CTACCGTAACCCTCAATCCAGTTCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAG
ATGAACTCAGTATGCCTAAGTCAACCCATGAAACAAGAGTACAGGCACTCAACCGATCAAAGAAG
CCAATCGGAGAGGCAAAATGCGCAAGCCAAGGATCGCTCTGGGCCCCCCTACATGCTTCTGATCC
TACCGCTGGTCCTGCTGCCACAACCCTCAGTCCGATTCGATCTTAGATTGGGAATGAACTCTGGA
TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
GTCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCCTGATCTACCCCTACATGCTGTCAAT
CTGCTACCACAATCCTCGATCCAATCTTAAACTAAGAATGAGCTCCGTATGCCTAAGACAAACCA
CGAAACGAGCGTTCGGGCACTGAGTCCACCGAAGAGGCATAATGCGCAAGCCAGTGATCGACCCG
ATCCCCCTCTGCGTGCTATCAGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGG
AATGAACTCCCTATGCCTAACCCAACCATAAAGGCAGAAGCCGAATATCGGCCCAATCCTTC
Found at i:14702629 original size:26 final size:26
Alignment explanation
Indices: 14702590--14702666 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
14702580 GATCTGATCA
*
14702590 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGGATGAACTCCGTATGCT
14702616 TAGACTGGGGATGAACTCCGTATGCT
1 TAGACTGGGGATGAACTCCGTATGCT
14702642 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGGATGAACTCCGTATGC
14702667 CTAAGTCAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
TAGACTGGGGATGAACTCCGTATGCT
Found at i:14703149 original size:184 final size:184
Alignment explanation
Indices: 14702798--14703167 Score: 508
Period size: 184 Copynumber: 2.0 Consensus size: 184
14702788 TCCAGCTGGG
* * * * ** *
14702798 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAG
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACAAGCATACAGGCGCTCAG
** * * * * * *
14702863 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTAATCCCCTCTGCGTGCTATCGATCT
66 CCGACCGGACAGGCAGAATGCACAAGCCGGGGATAGACCCAATCCCCTCTACGTGCTATCGATCC
* * * *
14702928 TGCTGTCGCAACCCTCGATTTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCACAACCCTCGATTCGGTCTAATCATAGACTGGGAATGAACTCCGTAT
*
14702982 GCTTAGAAATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACAAGCATGCAGGCGCTCAG
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACAAGCATACAGGCGCTCAG
*
14703047 CCGACCGGACAGGCAGAATGCACAAGCCGGGGATAGACCCAATCCCCTCCTACGTGCTGTCGATC
66 CCGACCGGACAGGCAGAATGCACAAGCCGGGGATAGACCCAATCCCCT-CTACGTGCTATCGATC
* * *
14703112 CTGCTGCCACAACCCTCGATTCGTTC-GATCATAGACTGGGAATGAACTCTGTAT
130 CTGCTGCCACAACCCTCGATTCGGTCTAATCATAGACTGGGAATGAACTCCGTAT
14703166 GC
1 GC
14703168 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 126 0.78
185 35 0.22
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (184 bp):
GCTTAGAAATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACAAGCATACAGGCGCTCAG
CCGACCGGACAGGCAGAATGCACAAGCCGGGGATAGACCCAATCCCCTCTACGTGCTATCGATCC
TGCTGCCACAACCCTCGATTCGGTCTAATCATAGACTGGGAATGAACTCCGTAT
Found at i:14703255 original size:343 final size:343
Alignment explanation
Indices: 14702614--14703286 Score: 849
Period size: 343 Copynumber: 2.0 Consensus size: 343
14702604 ACTCCGTATG
* * * * * *
14702614 CTTAGACTGGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGACAACCC
* * * * * *
14702679 ACGAAACGAGCGTGCGGTCGCTCAGTCGACCGGAAAGGCATAATGCACAAGTCAGGGATCAGCTC
66 ACGAAACAAGCATGCGGTCGCTCAGCCGACCGGAAAGGCAGAATGCACAAGCCAGGGATCAGCCC
* * * *
14702744 GATCCCCATCTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATG
131 AATCCCCATCTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCAGCTCGAGCATAGACATG
*
14702809 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAGCCGGTCGGAGA
196 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAGCCGATCGGAGA
* * * * * *
14702874 GGCAGAATGCACAAGTCGGGGATCGACCTAATCCCCTCTGCGTGCTATCGATCTTGCTGTCGCAA
261 GGCAGAATGCACAAGTCAGGGATCAACCTAATCCCCTCTGCATGCTATCGATCTCGCTGCCCCAA
14702939 CCCTCGATTTGGTCTAAT
326 CCCTCGATTTGGTCTAAT
14702957 CTTAGACTGGGAATGAACTCCGTATGCTTAGAAAT-GGAATGAACTCCATATGCCTAAGACAACC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAG-AATGGGAATGAACTCCATATGCCTAAGACAACC
* *
14703021 CACGAAACAAGCATGCAGG-CGCTCAGCCGACCGGACAGGCAGAATGCACAAGCCGGGGAT-AGA
65 CACGAAACAAGCATGC-GGTCGCTCAGCCGACCGGAAAGGCAGAATGCACAAGCCAGGGATCAG-
* * * *
14703084 CCCAATCCCC-TCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGATTC-GTTCGATCATAGA
128 CCCAATCCCCAT-CTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCAGCTCGAGCATAGA
* * ** *
14703147 C-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTACGGGTGCT-ATGCCGAT
192 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCA-GCCGAT
** * * * * *
14703210 TTGAGAGGCATAATGCGCAAGTCAGGGATCAATCC-GATCCCCCTCTGCATGTTGTCGATCTCGC
255 CGGAGAGGCAGAATGCACAAGTCAGGGATCAA-CCTAAT-CCCCTCTGCATGCTATCGATCTCGC
14703274 TGCCCCAACCCTC
318 TGCCCCAACCCTC
14703287 AATCCAGTTG
Statistics
Matches: 281, Mismatches: 41, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
341 2 0.01
342 92 0.33
343 183 0.65
344 4 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGACAACCC
ACGAAACAAGCATGCGGTCGCTCAGCCGACCGGAAAGGCAGAATGCACAAGCCAGGGATCAGCCC
AATCCCCATCTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCAGCTCGAGCATAGACATG
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAGCCGATCGGAGA
GGCAGAATGCACAAGTCAGGGATCAACCTAATCCCCTCTGCATGCTATCGATCTCGCTGCCCCAA
CCCTCGATTTGGTCTAAT
Found at i:14704508 original size:159 final size:159
Alignment explanation
Indices: 14704207--14704709 Score: 414
Period size: 159 Copynumber: 3.2 Consensus size: 159
14704197 ACTCCGTATG
* * **
14704207 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCACTCAGC
* * *
14704272 CGACCGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCATACTTGCTATCGATCC
66 CGACCGAAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGATCCCCCCATACTTGCTATCGATCC
* ** *
14704337 TACTGTCGCAACCCTCGGTCTGATCTAAT
131 CACTACCACAACCCTCGGTCTGATCTAAT
* * * * * *
14704366 CTTAGAC-TGGGAATGAACTCTGTATGCATAGGTCAACCCATGAAATGAGCATACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
* * * *
14704430 CCGATCGAAGAGGCATAATGCGAAAGTC-AGGGATCGACCCGGTCCCCCTC-T-GTGTGCTATCG
65 CCGACCGAAGAGGCAGAATGCGAAAGTCGA-GGATCGACCCGATCCCCC-CATACT-TGCTATCG
* * * * * ***
14704492 GTCCCGCTACCACAACCCTCTGTCCGGT-TGGGG
127 ATCCCACTACCACAACCCTCGGTCTGATCT-AAT
* * * ** * **
14704525 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCACGAAACGGGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCACTCAGC
* * * * * * *
14704589 C-AGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATTCCCCCCA-GCGTGCTGTTGAT
66 CGA-CCGAAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGA-TCCCCCCATACTTGCTATCGAT
** * * *
14704652 CTTAC-AGGCACAACCCTCGGTCTGGTCTGAT
129 CCCACTA-CCACAACCCTCGGTCTGATCTAAT
14704683 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14704710 TTGGACTGGG
Statistics
Matches: 267, Mismatches: 63, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 106 0.40
159 156 0.58
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCACTCAGC
CGACCGAAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGATCCCCCCATACTTGCTATCGATCC
CACTACCACAACCCTCGGTCTGATCTAAT
Found at i:14705082 original size:26 final size:26
Alignment explanation
Indices: 14705053--14705103 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14705043 AGTCCGATCA
*
14705053 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
14705079 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14705104 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14705304 original size:355 final size:359
Alignment explanation
Indices: 14704490--14705370 Score: 968
Period size: 355 Copynumber: 2.4 Consensus size: 359
14704480 TGTGTGCTAT
* * * *
14704490 CGGTCCCGCTACCACAACCCTCTGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * ** * * *
14704555 AGCCAACCACGAAACGGGTGTGCGGGTGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGGGG
66 AGCCAACCATGAAACGAGTGTGCGGGCACTCAGCGA-CCGGAGAGGCAGAATGCGCAAGTC-GGG
* ** * * * * *
14704620 ATCGACCCGATTCCCCCCAGCGTGCTGTTGATCTTACAGGCACAACCCTCGGTCTGGTCTGATCT
129 ATCGACCCGA-TCCCCCCTGCGTGCTGTCAATCCTACAGCCACAACCCTCGGTCTAGTCCGATCA
* *
14704685 TAGACTGGGAATGAACTCCGTATGCTTGGACTGGGGATGAACCCCGTATGCCTAAGTCAACCCAT
193 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACCCCGTATGCCTAAGTCAACCCAC
** * * * ** * *
14704750 AAAACGGGCGTGTGGGTGCTCAACCGATCGGAGAGGTCGGTCGGAGAGGCATAATGCGCAAGTCG
258 AAAAC-GAAGAGTGCGTGC-CAACC-AT--G-GAGGCCGACCGAAGAGGCATAATGCGCAAGCCG
* * * * * * *
14704815 GGGATTAGCTCGACCCCCCTCTGTGCGCTATCGATCCTGCTGC
317 AGGATAAGCCCGACCCCCCTCTGCGCGCCATCAATCCCGCTGC
* *
14704858 CAGTCCTGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* *
14704923 ATCCAACCCATGAAACGAGTGTGCGGGCACTCAGTCGACCGGAGAGGTAGAATGCGCAAGTCAGG
66 AGCCAA-CCATGAAACGAGTGTGCGGGCACTCAG-CGACCGGAGAGGCAGAATGCGCAAGTC-GG
* * * * * * *
14704988 GATCGGCTCGGTCCCCCCTGCGTACTGTCAATCCTACTGCCGCAACCTTCGGTCTAGTCCGATCA
128 GATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTACAGCCACAACCCTCGGTCTAGTCCGATCA
* *
14705053 TAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
193 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACCCCGTATGCCTAAGTCAACCCAC
* * * *
14705118 GAAA-TAAGAGTGCGTG-C-A-C-T-TA-GCCGACCGAAGAGGCATAATGCGTAAGCCGAGGATA
258 AAAACGAAGAGTGCGTGCCAACCATGGAGGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATA
* * *
14705176 AGCCC-AGTCCCCCTCTGCGTGCCGTCAATCCCGCTGC
323 AGCCCGA-CCCCCCTCTGCGCGCCATCAATCCCGCTGC
* * *
14705213 CGGTCCTGCTACTACAACCCTAGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * *
14705278 AGCCAATCCATGAAATGAGCGTGCGGGCACTCAGCTGACCGGAAAGGCAAAATGCGTAAATCGAG
66 AGCCAA-CCATGAAACGAGTGTGCGGGCACTCAGC-GACCGGAGAGGCAGAATGCGCAAGTCG-G
14705343 GATCGACCCGATCCCCCCTGCGTGCTGT
128 GATCGACCCGATCCCCCCTGCGTGCTGT
14705371 TGATCCTGCT
Statistics
Matches: 432, Mismatches: 76, Indels: 23
0.81 0.14 0.04
Matches are distributed among these distances:
354 3 0.01
355 191 0.44
356 1 0.00
360 1 0.00
362 1 0.00
363 1 0.00
364 1 0.00
366 7 0.02
368 170 0.39
369 54 0.12
370 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (359 bp):
CGGTCCTGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCATGAAACGAGTGTGCGGGCACTCAGCGACCGGAGAGGCAGAATGCGCAAGTCGGGAT
CGACCCGATCCCCCCTGCGTGCTGTCAATCCTACAGCCACAACCCTCGGTCTAGTCCGATCATAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACCCCGTATGCCTAAGTCAACCCACAAA
ACGAAGAGTGCGTGCCAACCATGGAGGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATAAGC
CCGACCCCCCTCTGCGCGCCATCAATCCCGCTGC
Found at i:14705700 original size:179 final size:179
Alignment explanation
Indices: 14705397--14705722 Score: 408
Period size: 179 Copynumber: 1.8 Consensus size: 179
14705387 CCTACTGCCA
* * * *
14705397 CAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGATCCGATCTAAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAAC
* * ** *
14705462 TCCATATGCCGAAGCCGACCCATGAAACAAGCGTACGGTTGCTCAACCGATCTGAGAGGCAGAAT
66 TCCATATACCGAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAACCGATCAGAGAGGCAGAAT
*
14705527 GCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGACTGTTG
131 GCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGACTGTTG
* *
14705576 CAACCCTCGGTCC-ATTCTGATCTAAGACTAGGAATGAACTCCATATGCTTAGAC-TGGGGATG-
1 CAACCCTCGGTCCGA-TCCGATCTAAGACTAGGAATGAACTCCATATGCTTAGACAT-GGAATGA
* * * * ** *
14705638 ACATTCGTATACCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGA-CAAGAGAGGCA
64 AC-TCCATATACCGAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAACCGATC-AGAGAGGCA
*
14705702 GGATGCGCAAGCCGGGGATCG
127 GAATGCGCAAGCCGGGGATCG
14705723 AACGGGTGGT
Statistics
Matches: 123, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
178 5 0.04
179 118 0.96
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (179 bp):
CAACCCTCGGTCCGATCCGATCTAAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAAC
TCCATATACCGAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAACCGATCAGAGAGGCAGAAT
GCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGACTGTTG
Found at i:14706396 original size:26 final size:26
Alignment explanation
Indices: 14706320--14706398 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
14706310 GGCTCAAAAT
*
14706320 CTTAGAC-TGGGAATGCAA-TCCGTACG
1 CTTAGACAT-GGAATG-AACTCCGTATG
14706346 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
14706372 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14706398 C
1 C
14706399 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.04
26 46 0.94
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14707429 original size:26 final size:26
Alignment explanation
Indices: 14707400--14707452 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14707390 CCGATCTAAT
14707400 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14707426 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14707452 C
1 C
14707453 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.