Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 88 of 138
Found at i:14708085 original size:26 final size:26
Alignment explanation
Indices: 14708047--14708099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14708037 GGCTCAAAAT
14708047 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
14708073 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
14708099 C
1 C
14708100 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14709795 original size:159 final size:155
Alignment explanation
Indices: 14709504--14709989 Score: 501
Period size: 159 Copynumber: 3.1 Consensus size: 155
14709494 CTTAGACATT
*
14709504 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAT-GGAGA
** * * * * **
14709569 GGCAGAATGCATAAATCGGGGATCGACCCGATCCTCCCGTACGTACTGTCGATCCTGCTACTGCA
65 GGCAGAATGCATAAGCCGGGGATCG-CCCGATCC-CCCCTGCGTGCTGTCGATCCTGCTGCCACA
* * *
14709634 ACCCTCAGTTCGATATGATCTTAGACTAA
128 ACCCTCGGTCCGAT-TGATCTTAGACTAG
* * * * * *
14709663 GAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCGATAGAAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAT-GGAGA
* * * *
14709728 GGCATAATGC-TCAAGCCAGGGATCGCTCGGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAC
65 GGCAGAATGCAT-AAGCCGGGGATCGC-CCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCCAC
* * * **
14709792 AACCCTTGGTCCGGCTGGGGCTTAGAC-ATG
127 AACCCTCGGTCC-GATTGATCTTAGACTA-G
* * * * * *
14709822 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGCCGGCTGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC-GATGGAGA
* *
14709887 GGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTG-CTGATCCTGCTGCCACA
65 GGCAGAATGCATAAGCCGGGGATC-GCCCGATCCCCCCTGCGTGCTGTC-GATCCTGCTGCCACA
*
14709951 ACCCTCGGTCCGATCTGATCTTAGACTGG
128 ACCCTCGGTCCGAT-TGATCTTAGACTAG
14709980 GAATGAACTC
1 GAATGAACTC
14709990 TGCATGCTTA
Statistics
Matches: 265, Mismatches: 51, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 58 0.22
159 197 0.74
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATGGAGAG
GCAGAATGCATAAGCCGGGGATCGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACC
CTCGGTCCGATTGATCTTAGACTAG
Found at i:14709999 original size:26 final size:26
Alignment explanation
Indices: 14709970--14710022 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14709960 CCGATCTGAT
14709970 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
* *
14709996 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
14710022 C
1 C
14710023 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:14710958 original size:32 final size:32
Alignment explanation
Indices: 14710912--14710974 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
14710902 CGTAAGTAAC
*
14710912 CCACAAAACGAGCGTGCGGGCACTCAGCCAAG
1 CCACAAAACGAGCGTGCGGGCAATCAGCCAAG
* *
14710944 CCACGAAACGAGCGTGCGGGCAATTAGCCAA
1 CCACAAAACGAGCGTGCGGGCAATCAGCCAA
14710975 CCGGAGAGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.29, T:0.08
Consensus pattern (32 bp):
CCACAAAACGAGCGTGCGGGCAATCAGCCAAG
Found at i:14711405 original size:26 final size:26
Alignment explanation
Indices: 14711376--14711428 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14711366 CCGATCCGAT
* *
14711376 CTTATACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
14711402 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
14711428 C
1 C
14711429 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:14711967 original size:159 final size:158
Alignment explanation
Indices: 14711545--14712074 Score: 461
Period size: 159 Copynumber: 3.3 Consensus size: 158
14711535 TGTCGATCTT
* * * *
14711545 GCTGTCACAACCCTCGATC-CAGTCTGATCTTAGA-TTGGGAATGAACTCCGTATGCCTAA-CCT
1 GCTGCCACAACCCTCGGTCTGA-TCTGATCTTAGACAT-GGAATGAACTCCGTATGCCTAATCC-
* * * * *** *
14711607 AAGCCACGAAACGAGCGTGCGGACGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGTTAAGGACC
63 AACCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC
**
14711672 AATCCAGTCCTCCCCTGCGTG-TCATCGATCCTA
128 AGCCCAGTCC-CCCCTGCGTGCT-ATCGATCC-A
* * *
14711705 -CTACCACAACCCTCGGT-TCGATCTGATCTTAGACAAGGAATGAACTCTGTATGCCTAAGT-CA
1 GCTGCCACAACCCTCGGTCT-GATCTGATCTTAGACATGGAATGAACTCCGTATGCCTAA-TCCA
* * * * * * *
14711767 ACCCACGAAACAAGCGT-TCGGGGGCTGAGCAGGCCGAAGAGGCATAATGCGCAAGTCGGGGATC
64 ACCCACGAAACGAGCGTGT-GGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC
*
14711831 AGCCCAGTCCCCCACTGCGTGCTACCGATCCA
128 AGCCCAGTCCCCC-CTGCGTGCTATCGATCCA
** *
14711863 GCTGCCACAACCCTCGGTCTGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAATCCAA
1 GCTGCCACAACCCTCGGTCTGATCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAATCCAA
* * * * * * * *
14711927 CCCACGAAATGGGCATGTGGGTGCTCAGCCTACCGGAGAGGCAGAATTG-ACAAGCCGGGGATCG
65 CCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAA-TGCGCAAGTCGGGGATCA
** ** *
14711991 GCCTGGTTTCCCCTGCGTGCTATCGATCCT
129 GCCCAGTCCCCCCTGCGTGCTATCGATCCA
* * * *
14712021 GCTGTCGCAACCTTCGGTCCGATCTGATCTTAGAC-TGGGAATGAACTCCGTATG
1 GCTGCCACAACCCTCGGTCTGATCTGATCTTAGACAT-GGAATGAACTCCGTATG
14712075 GTTAGACTGG
Statistics
Matches: 296, Mismatches: 58, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
157 1 0.00
158 65 0.22
159 223 0.75
160 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTGCCACAACCCTCGGTCTGATCTGATCTTAGACATGGAATGAACTCCGTATGCCTAATCCAAC
CCACGAAACGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGC
CCAGTCCCCCCTGCGTGCTATCGATCCA
Found at i:14712079 original size:26 final size:26
Alignment explanation
Indices: 14712050--14712100 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14712040 CGATCTGATC
14712050 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
14712076 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14712101 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:14712448 original size:26 final size:26
Alignment explanation
Indices: 14712410--14712462 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14712400 CCGGTCCAAT
14712410 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
14712436 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
14712462 C
1 C
14712463 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14713047 original size:159 final size:157
Alignment explanation
Indices: 14712435--14713096 Score: 534
Period size: 159 Copynumber: 4.2 Consensus size: 157
14712425 AACTCTGTAT
* * ** * *
14712435 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAAAGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
14712500 CCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCT-TCGATCC
66 CCGGCCAGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
** ** * *
14712564 TGCTGCTGCAACCCTT-GGTCTGGTCTGA
131 CACTGCCACAA-CCTTCAGTCT-GACTGA
* * ** ** * * *
14712592 TCTTAGATA-GAGAATGAACTCAATATGCCTAAATCAACCCACGAAATGAGCGTGCAGGCGTTGA
1 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * * ** * * *
14712656 TCCAGTCGGAGAGGCATAATGTGAAAGTCGGGGATCGACCTGATCCCTATCTGCATGCTGTCGGT
65 GCCGGCCAGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCC-CCCTGCGTGCTGCCGAT
* *
14712721 CCCACTGCCACAACC--CACGATCTGGCTGGG
129 CCCACTGCCACAACCTTCA-G-TCTGACT-GA
* * * * *
14712751 GCTTAGACATAGAATGAACTCCCTATGCCTCAGCCAACCCATGAAAGGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
14712816 CCGGCCTA-AGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTTTGCGTGCTGCC-AG
66 CCGGCC-AGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGA-
* * *
14712879 TCCCGCTGCCACAACCTTCAGTCCGACTGGG
128 TCCCACTGCCACAACCTTCAGTCTGACT-GA
* * *
14712910 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
14712975 CCGGACAGAGAGGGGAAAATGCGTAAG-CTGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGAT
66 CCGGCCAGAGA-GGCAGAATGCGTAAGTC-GGGGATCGACCCGATCCCCCCTGCGTGCTGCCGAT
* * *
14713039 CCTACTGCCGCAA-CTCTCGGTCTGATCTGA
129 CCCACTGCCACAACCT-TCAGTCTGA-CTGA
*
14713069 GCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
14713097 TTAGACTAGG
Statistics
Matches: 395, Mismatches: 90, Indels: 38
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 84 0.21
158 18 0.05
159 257 0.65
160 33 0.08
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCAGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
CACTGCCACAACCTTCAGTCTGACTGA
Found at i:14713108 original size:26 final size:26
Alignment explanation
Indices: 14713069--14713122 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14713059 TCTGATCTGA
*
14713069 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
*
14713095 GCTTAGACTAGGAATGAACTCTGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
14713121 GC
1 GC
14713123 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCCGTAT
Found at i:14713830 original size:26 final size:26
Alignment explanation
Indices: 14713792--14713844 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14713782 GGCTCAAACT
*
14713792 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14713818 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14713844 C
1 C
14713845 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14714360 original size:26 final size:27
Alignment explanation
Indices: 14714318--14714375 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
14714308 CTGGTCCGAT
14714318 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
* *
14714344 CTTAGACAT-GGAGTGAACTCTATATGC
1 CTTAGAC-TGGGAATGAACTCCATATGC
14714371 CTTAG
1 CTTAG
14714376 CGAACACACG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:14715199 original size:553 final size:537
Alignment explanation
Indices: 14713966--14715200 Score: 1231
Period size: 553 Copynumber: 2.3 Consensus size: 537
14713956 GCTGGGGCTG
* * * *
14713966 AGACATGGAATGAACTCCCTATGGCTAAGCCAACCCATGAAACAGGCATGCGGGCGCTCAACCGA
1 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCGA
* ** * * ** ** *
14714031 CCGGAGAGGCAGAATGCACAAG-TCGAGGATCGGCCCGATCCCCCTTGCATATTGTCGAT-CTCG
66 TCGGAGAGGCAGAATGCACAAGCT-GAGGATCAACCCGGTCCCCCCTGCATGCTACCGATCCT-A
* * * **
14714094 CTGCCACGACCCTC-AGTCCGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAG
129 CTGCCACAACCCTCGA-TTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAG
*** *
14714158 GATGAACTTTGTATGCCTAAGTGAACCCACGAAACGAGTGTGCGAGCGCTCAGCAGGTCGGAGAG
193 GATGAACGCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTCAGCAGGTCGGAGAG
* *
14714223 GCAGAATGTGCAAGCCGAGGATTGGCCCGGTCCCCCCCTATGTGCTACCGATCCTGTCGCTGGTC
258 GCAGAATGAGCAAGCCGAGGATTGGCCCGGTCCCCCCCTATGTGCTA-C-ATCCTGTCGCTAGTC
* * * * * *
14714288 CTACTGCCGTAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT
321 CTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATACTTAGACAT
* * * * * * *
14714353 GGAGTGAACTCTATATGCCTTAGCGAACACACGAAACGAGCGTCCAGGCACTCAGCCGGCTGGAG
386 GGAATGAACTCCATATGCCTAAGCAAACACACGAAACGACCGTACAGGCACTCAACCGGCTGGAG
* * * *
14714418 AGGCAGAATGTGCAAGCCGAGGATCAATCTGGTCCCCCTCTGCGAGCTGTTTGTCCCACTACCAC
451 AGGCAGAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTCTGCGAGCTGTTCGTCCCACTACCAC
* *
14714483 AACCTTCGGTCTGGCTGGGACTT
516 AACCCTCGGTCAGGCT-GGACTT
* * *
14714506 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGGGTGCTCAGCCGA
1 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCGA
* * * ** *
14714571 TTGGAGAGGTAGAATGCACAAGCTGAGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCTTACT
66 TCGGAGAGGCAGAATGCACAAGCTGAGGATCAACCCGGTCCCCCCTGCATGCTACCGATCCTACT
*** * *
14714636 GTTGCAACCCTCGATTCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGAGGAT
131 GCCACAACCCTCGATTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGAT
*
14714701 GAACGCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAACTGGTCGGAGAGGCC
196 GAACGCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTC-A---G-C----A-G--
* *
14714766 AGTCGGAGAGGCAGAATGAGTAAGCCGAGGATCT-GCTCGGTCCCCCCCTTCATGTTGCTA-ATC
249 -GTCGGAGAGGCAGAATGAGCAAGCCGAGGAT-TGGCCCGGTCCCCCCC-T-ATG-TGCTACATC
* * *
14714829 TTG-CTGCTAGTCTTACTGTCGCAACCCTC-GATCCGATCCGATCTTAGACTAGGAATGAACTCC
309 CTGTC-GCTAGTCCTACTGCCGCAACCCTCAG-TCCGATCCGATCTTAGACTAGGAATGAACTCC
* * * *
14714892 GTATACTTAGACATGGAATGAACTCCATATGCCTAAGCAAACCCATGAAACGACCGTAC-GGACG
372 ATATACTTAGACATGGAATGAACTCCATATGCCTAAGCAAACACACGAAACGACCGTACAGG-CA
* * *** * *
14714956 CTCAACC-GATCGGAGAGGCAGAATGCGTAAGCCGAGGATTGGCCCGGTGCCCC-CTGTGAGCTG
436 CTCAACCGGCT-GGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTCTGCGAGCTG
** * * *
14715019 -TCGATCCTGCTGCTACAACCCTCGGTCCAGTCT-GATCTT
500 TTCG-TCCCACTACCACAACCCTCGGT-CAGGCTGGA-CTT
* * ** *
14715058 AGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC-GAGCGTTTGGGCGCTGAGCC
1 AGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAG-GCATGCGGGCGCTCAGCC
* ** * * * *
14715121 GATCGGAGAGGCATAATGTGCAAGCTGGGGATCGACTCGGTCCCCCTCTGCATGTTACCGATCCT
64 GATCGGAGAGGCAGAATGCACAAGCTGAGGATCAACCCGGTCCCCC-CTGCATGCTACCGATCCT
14715186 A-TAGCCACAACCCTC
128 ACT-GCCACAACCCTC
14715201 AGTCCGGCTG
Statistics
Matches: 568, Mismatches: 96, Indels: 49
0.80 0.13 0.07
Matches are distributed among these distances:
540 207 0.36
541 4 0.01
544 1 0.00
545 1 0.00
549 1 0.00
550 1 0.00
551 6 0.01
552 125 0.22
553 212 0.37
554 2 0.00
555 3 0.01
556 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (537 bp):
AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCGA
TCGGAGAGGCAGAATGCACAAGCTGAGGATCAACCCGGTCCCCCCTGCATGCTACCGATCCTACT
GCCACAACCCTCGATTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGAT
GAACGCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTCAGCAGGTCGGAGAGGCA
GAATGAGCAAGCCGAGGATTGGCCCGGTCCCCCCCTATGTGCTACATCCTGTCGCTAGTCCTACT
GCCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATACTTAGACATGGAAT
GAACTCCATATGCCTAAGCAAACACACGAAACGACCGTACAGGCACTCAACCGGCTGGAGAGGCA
GAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTCTGCGAGCTGTTCGTCCCACTACCACAACCC
TCGGTCAGGCTGGACTT
Found at i:14715401 original size:26 final size:26
Alignment explanation
Indices: 14715372--14715424 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14715362 CCGGTTCAAT
14715372 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14715398 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14715424 C
1 C
14715425 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14715781 original size:26 final size:26
Alignment explanation
Indices: 14715752--14715804 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14715742 CCGATCTGAT
*
14715752 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14715778 CTTAGACATGGAATGAATTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14715804 C
1 C
14715805 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14716080 original size:159 final size:159
Alignment explanation
Indices: 14715777--14716194 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 159
14715767 AGCTCCGTAT
* * **
14715777 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * **
14715842 CTGACTGAAAAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCACCTGTGTGCTGTTGATC
66 CCGACTGAAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCACCTGTGTGCTGCCGATC
* * *
14715907 CTGCTACCATAACCCTCGGTCCGATCT-GA
131 CCGCTACCACAACCCTCGGTCCG-GCTAGA
* * * * *
14715936 TCTTAGA-TTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGA-TG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-CACTC
** * * *
14715999 AGCCGGTTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCC-CTCTGTGTGCTGCCG
64 AGCCGACTGAAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCAC-CTGTGTGCTGCCG
* * *
14716063 GTCCCGCTGCCACAACCCTCGGTCCGGCTAGG
128 ATCCCGCTACCACAACCCTCGGTCCGGCTAGA
* * * * * * *
14716095 GCTTAGACATGGAATCAACTCCCTATGCTTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
14716160 TCGAC-CAGAGAGGCAGAATGCGGAAGCCGGGGATC
66 CCGACTGA-AAAGGCAGAATGCGCAAGCCAGGGATC
14716195 GACCCAGTCC
Statistics
Matches: 208, Mismatches: 44, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
158 5 0.02
159 201 0.97
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACTGAAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCACCTGTGTGCTGCCGATC
CCGCTACCACAACCCTCGGTCCGGCTAGA
Found at i:14716784 original size:26 final size:26
Alignment explanation
Indices: 14716755--14716808 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
14716745 GGTTCGATCT
14716755 TAGACTGGGAATGAACT-TCGTATGCC
1 TAGACTGGGAATGAACTCT-GTATGCC
*
14716781 TAGACTGGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
14716807 TA
1 TA
14716809 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:14716872 original size:500 final size:498
Alignment explanation
Indices: 14715732--14716876 Score: 1262
Period size: 499 Copynumber: 2.3 Consensus size: 498
14715722 CTACTGCCGT
* * * * *
14715732 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACAT-GGAATGAAT
1 AACCCTCGATCGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGAATGAAC
* * * * * *
14715796 TCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGGCACTCAGCTGACTGAAAAGGCAGAAT
64 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC-GACAG-AGAGGCAGAAT
* * * * * * * * *
14715861 GCGCAAGTCAGGGATCAGCCCGGTCCCCACCTGTGTGCTGTTGATCCTGCTACCATAACCCTCGG
127 GCGCAAGCCGGGGATCAGCCCGATCCCCACCTGCGTGCTATCGATCCTGCTACCACAACCATCGA
* *
14715926 TCCGATCTGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
192 TCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
* * * * * * **
14715991 GGGTGATGAGCCGGTTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGT
257 AGGTCATGAGCCAGTCGAAGAGGCATAATGCGCAACCCAGGGATCAGCCCGATCCCCCTCTACGT
* * * *
14716056 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATCAACTCCCTAT
322 GCTGCCGGACCCGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATCAACTACCTAT
* * * * * *
14716121 GCTTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAATCGACCAGAGAGGCAGAATGCGGAAG
387 GCCTAAGCCAACCCAGGAAACGGGCATGCGAGCACTCAACCGACCAGAGAGGCAGAATGCGCAAG
*
14716186 CCGGGGATCGACCCAGTCCCCCGTGCGTACTGCCAAAATCCTCCCAC
452 CCGGGGATCGACCCAGTCCCCCCTGCGTACTGCCAAAATCCTCCCAC
* * **
14716233 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGCTTGAACT
1 AACCCTCGAT-CGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
* * * * * * * * ** *
14716298 CTGTTTGCCTTAGTCAACCCAGGGAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGAAATAATG
65 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG-C-GACAGAGAGGCAGAATG
* * * *
14716363 CACAAGCCGGGGATCGGCCCGATCCCC-CCTGCGTGCTATCGATCCTGCTACCGCATCCATCGAT
128 CGCAAGCCGGGGATCAGCCCGATCCCCACCTGCGTGCTATCGATCCTGCTACCACAACCATCGAT
* * *
14716427 CCGGTCCGATCTTAGACT-GGAAATGAACTTCGTATGCCTATA-TCAACCCATGAAA-TAGCGTG
193 CCGATCCGATCTTAGACTAGG-AATGAACTCCGTATGCCTA-AGTCAACCCATGAAACGAGCGTG
* *
14716489 CAGG-CACTGAGCCAGTCGAAGAGGCATAATGCGTAACCCGGGGATCAGCCCGATCCCCCTCTAC
256 CAGGTCA-TGAGCCAGTCGAAGAGGCATAATGCGCAACCCAGGGATCAGCCCGATCCCCCTCTAC
* * *
14716553 GTGCTGTCGGACCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGC-ACTACC
320 GTGCTGCCGGACCCGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAAT-CAACTACC
* * *
14716617 TATGCCTAAGCCAACCCAGGAAACGGGCGTGCGAGCACTCAACC-AGCCGGAGAGGCAGAATGTG
384 TATGCCTAAGCCAACCCAGGAAACGGGCATGCGAGCACTCAACCGA-CCAGAGAGGCAGAATGCG
** * * * ** * ** *
14716681 CAAGTTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCATGCTGTCGC
448 CAAGCCGGGGATCGACCCAGTCCCCCCTGCGTACTGCC-AAAATCCTCCCAC
* *
14716733 AACCCTCGATCAGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAGACTGGGGATGAACT
1 AACCCTCGATC-GGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
* * * ** * *
14716798 CTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGAAACTCGGTCGACCAGAGAGGCAGGATG
65 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG-CGA-CAGAGAGGCAGAATG
*
14716863 CGTAAGCCGGGGAT
128 CGCAAGCCGGGGAT
14716877 GGAATGGGTG
Statistics
Matches: 526, Mismatches: 107, Indels: 23
0.80 0.16 0.04
Matches are distributed among these distances:
498 2 0.00
499 202 0.38
500 199 0.38
501 116 0.22
502 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (498 bp):
AACCCTCGATCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCGACAGAGAGGCAGAATGCGC
AAGCCGGGGATCAGCCCGATCCCCACCTGCGTGCTATCGATCCTGCTACCACAACCATCGATCCG
ATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGT
CATGAGCCAGTCGAAGAGGCATAATGCGCAACCCAGGGATCAGCCCGATCCCCCTCTACGTGCTG
CCGGACCCGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATCAACTACCTATGCCT
AAGCCAACCCAGGAAACGGGCATGCGAGCACTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGG
GGATCGACCCAGTCCCCCCTGCGTACTGCCAAAATCCTCCCAC
Found at i:14717514 original size:26 final size:25
Alignment explanation
Indices: 14717475--14717526 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14717465 GGCTCAAAAT
14717475 CTTAGACTGGAATGAACTTCGTATG
1 CTTAGACTGGAATGAACTTCGTATG
14717500 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-TGGAATGAACTTCGTATG
14717526 C
1 C
14717527 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTTCGTATG
Found at i:14718716 original size:183 final size:183
Alignment explanation
Indices: 14718506--14718872 Score: 447
Period size: 183 Copynumber: 2.0 Consensus size: 183
14718496 TCTGGTTGGG
* *
14718506 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCC-CGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCC-AACCCACGAAACGAACGTGCGGGCGCTCA
* * *
14718570 GCCGACTGGAAAGGCAGAATG-TGCAAGCC-GA-AGTTGACCTGGTCCCCCCTGCGCCCTCCCGA
65 GCCGACTGGAAAGGCAGAATGCT-CAAGCCAGAGA-TCGACCCGAT-CCCCCTGCGCCCTCCCGA
14718632 TCCTGCTGTC-GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
127 TCCTGCTG-CAGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
14718689 GCTTAGACATGAAATGAACTTCGTATGCCTAAGCCAACCCACGAAATTAACGTGCGGGCGCTTAG
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
** * * * ** **
14718754 CCGGTTGGAGAGGCAGAATGCTCTAGCCAGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCCT
66 CCGACTGGAAAGGCAGAATGCTCAAGCCAGAGATCGACCCGATCCCCCTGCGCCCTCCCGATCCT
* * * * *
14718819 GTTGCAGCAACCCTCGGTTCGGTCTGATCTTAGTCTGGGAATGAACTCCGTAT
131 GCTGCAGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
14718872 G
1 G
14718873 AACAAGTCAA
Statistics
Matches: 156, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
182 6 0.04
183 140 0.90
184 9 0.06
185 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
CCGACTGGAAAGGCAGAATGCTCAAGCCAGAGATCGACCCGATCCCCCTGCGCCCTCCCGATCCT
GCTGCAGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14719139 original size:158 final size:154
Alignment explanation
Indices: 14718689--14719190 Score: 428
Period size: 158 Copynumber: 3.2 Consensus size: 154
14718679 AACTCCGTAT
* * * * *
14718689 GCTTAGACATGAAATGAACTTCGTATGCCTAAGCCAACCCACGAAATTAACGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
14718754 CCGGTTGGAGAGGCAGAATGCTCTAGCCAGGGATCGACCC-GATCCCCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCT-AAGCCA-GGA-CGGCCCAG-TCCCCCTGCGTGCTGTCGATCC
* *
14718818 TGTTG-CAGCAACCCTCGGTTCGGTCTGA
127 TGCTGCCA-CAACCCTCGGTTCGGACTGA
* * * * * *
14718846 TCTTAGTC-TGGGAATGAACTCCGTATGAAC-AAGTCAACCCACGAAATGAGCGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATG-CCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * *
14718909 AGCCGGTCGAAGAGGCATACGATGC-AAGTCGAGGATGGCCCAGTCCCCCTCTGCGTGCTG-CAG
64 AGCCGGTCGGAGAGGCAGA--ATGCTAAG-CCAGGACGGCCCAGT-CCCC-CTGCGTGCTGTC-G
* * * *
14718972 GTCCCGCTGCCACAACCCTCGG-TCTGACTGCG
123 ATCCTGCTGCCACAACCCTCGGTTCGGACTG-A
* * * *
14719004 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
**
14719069 CCGACCGGAGAGGCAGAATGCGTAAGCCATGGACCGGCCCAGTCCCCGCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGC-TAAGCCA-GGA-CGGCCCAGTCCCC-CTGCGTGCTGTCGATCC
* * * *
14719134 TGCTGCCCGCAACCCTC-GATCCGATCCGA
127 TGCTG-CCACAACCCTCGGTTCGGA-CTGA
* *
14719163 TCTTAAAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14719191 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 50, Indels: 42
0.75 0.14 0.12
Matches are distributed among these distances:
156 10 0.04
157 85 0.31
158 124 0.45
159 52 0.19
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCTAAGCCAGGACGGCCCAGTCCCCCTGCGTGCTGTCGATCCTGCT
GCCACAACCCTCGGTTCGGACTGA
Found at i:14719193 original size:26 final size:26
Alignment explanation
Indices: 14719164--14719216 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14719154 CCGATCCGAT
14719164 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
14719190 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14719216 C
1 C
14719217 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14719550 original size:170 final size:170
Alignment explanation
Indices: 14719189--14719555 Score: 377
Period size: 171 Copynumber: 2.2 Consensus size: 170
14719179 AACTCCGTAT
* * * * * *
14719189 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACTCAA
* * ** *
14719254 CCGACCATAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGAGCACCCTCTGCATGCTACCGATC
66 CCGACCATAAAGGCAGAATGCACAAGCCGAGGATCAGCCCGAGCACCCTCTACATGCTACCGATC
* *
14719319 TCGCTGCCGGTCCTGCAGCCACAACCCTCGGTCCGGTTAC
131 TCGCTGCCGGTCCTGCAGCCACAACCCTAGGTCCGATTAC
**
14719359 GGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTC
1 -GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACTC
* * * * * **
14719423 AACCGGCCGA-AAAGGTAGAATGCACAAGCCGGGGATC-GACCCGATC-CCCTCTACGTGCTGTC
64 AACCGACC-ATAAAGGCAGAATGCACAAGCCGAGGATCAG-CCCGAGCACCCTCTACATGCTACC
* * * *
14719485 GATC-CTGCTGCTGGTCCTGCTGTCACAACCCTAGGTCTGATCTGA-
127 GATCTC-GCTGCCGGTCCTGCAGCCACAACCCTAGGTCCGAT-T-AC
* *
14719530 TCTTAGACTGGGAATGAACTCTGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
14719556 TCTTAGACAT
Statistics
Matches: 161, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
169 2 0.01
170 68 0.42
171 88 0.55
172 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACTCAA
CCGACCATAAAGGCAGAATGCACAAGCCGAGGATCAGCCCGAGCACCCTCTACATGCTACCGATC
TCGCTGCCGGTCCTGCAGCCACAACCCTAGGTCCGATTAC
Found at i:14719744 original size:26 final size:26
Alignment explanation
Indices: 14719715--14719767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14719705 CTGGTCCGAT
*
14719715 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14719741 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14719767 C
1 C
14719768 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14721149 original size:26 final size:26
Alignment explanation
Indices: 14721120--14721172 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14721110 CCGATCTGAT
*
14721120 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATCAACTCCGTATG
14721146 CTTAGACATGGAATCAACTCCGTATG
1 CTTAGACATGGAATCAACTCCGTATG
14721172 C
1 C
14721173 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATCAACTCCGTATG
Found at i:14721412 original size:158 final size:159
Alignment explanation
Indices: 14721145--14721524 Score: 430
Period size: 158 Copynumber: 2.4 Consensus size: 159
14721135 AACTCCGTAT
* * *
14721145 GCTTAGAC-ATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
*** * * * * * * *
14721209 GCCGGTCGGAGAGGTAGAATGCGTAAGCCGGTGATCAGTCTGGTCCCCCCTACCTGATGTCGATC
66 GCCAACCGAAAAGGCAAAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTACCTGATGTCGATC
** *
14721274 CTGCTACTGCAACCCTCGGTCCGA-C-GA
131 CTGCTACCACAACCCTCGGTCCAATCTGA
* *
14721301 GGGCTTAG-TTATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT
1 --GCTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT
* ** * * *
14721365 CAGCCAACCGAAAAGGCAAAATGCGCT-AGCTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCG
64 CAGCCAACCGAAAAGGCAAAATGCG-TAAGCCGGGGATCAGCCCGGTCCCCCCTACCTGATGTCG
*
14721429 ATCCTGCTACCACAACCCTTGGTCCAATCTGA
128 ATCCTGCTACCACAACCCTCGGTCCAATCTGA
* * * *
14721461 TCTTAGACTA-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
14721525 ACTGACCAGA
Statistics
Matches: 186, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
158 180 0.97
159 4 0.02
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
GCCAACCGAAAAGGCAAAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTACCTGATGTCGATC
CTGCTACCACAACCCTCGGTCCAATCTGA
Found at i:14728606 original size:26 final size:26
Alignment explanation
Indices: 14728577--14728629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14728567 CCCGTTCGAT
14728577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14728603 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14728629 C
1 C
14728630 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14729455 original size:524 final size:523
Alignment explanation
Indices: 14728786--14729897 Score: 1361
Period size: 524 Copynumber: 2.1 Consensus size: 523
14728776 TCCGGCTGGG
*
14728786 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
14728851 TAGACCAGAGAGGCAGAATGCGTAAGTCGAGGTTCAACCCGATCCCTCCGGCGTGCTGTCGATCC
66 TAGACCAGAGAGGCAAAATGCGCAAGCCGAGGTTCAACCAGATCCCCCCGGCGTGCTGTCGATCC
* * * * *
14728916 TGCTATCGCAACCCTCAGTTC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
131 TACTACCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * *
14728980 ATCCATGAAACCAGCGTACGGGCGCTGAGCCGGCCGGGGAGGCATAATGCGTAAGCTGAGGATCA
195 ACCCACGAAACCAGCGTACGGGCGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCA
* * * *
14729045 GCTCGGTCCCCCTCTGCGTTCTACCGATCCCGCTGCCGATCCTACTGCCACAACCCTCGATCTAG
260 GCTCGGTCCCCCTCTGCGTGCTACCGATCCCACTGCCGATCCTACTACCACAACCCTCGATCCAG
* * * **
14729110 CTGGGGCTTAGAAATTGAGTGAACTCCGTATGCCTAAGACAACCCATGAAATGAGCGGGCGGGCG
325 CTGGGGCTTAGAAATGGAATGAACTCCGTATACCTAAGACAACCCACAAAATGAGCGGGCGGGCG
* * * * * *
14729175 CTCAATCGATCGGAGAGGCAGAATGCGCAAG-CGATGGATTGGCCCGGTCCCCCTTGTGTGCTAT
390 CTCAACCGACCGGAGAGGCAGAATGCGCAAGCCG-CGAAATGGCCCGGTCCCCC-TGCGTGCTAT
* * * * *
14729239 CGATCCTGTGCTGGTCCTACTACCGTAACCCTTAGACCGGTCCGATCTTAGATTGGGAATGAAAT
453 CGATCCTATGCTAGTCCTACTACCGCAACCCTCAGACCGGTCCGATCTTAGACTGGGAATGAAAT
14729304 CTGTAT
518 CTGTAT
* * *
14729310 GCTTAGACATGGAATGAACTCCATATGCCTCAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * ** *
14729375 TCGGTCGGAGAGGCAAAATGGGCAAGCC-AGGGATT-GGCTCAG-TCCCCCCTGCGTGCTGTCGA
66 TAGACCAGAGAGGCAAAATGCGCAAGCCGA-GG-TTCAAC-CAGATCCCCCCGGCGTGCTGTCGA
* * *
14729437 TCCTATTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
128 TCCTACTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
** * * *
14729502 CAACCCACGAAATGAGCGTGCGGGCGCTGAGTCGGCCGGAGAGGCATAATGCGCAAGCCGGGGAT
193 CAACCCACGAAACCAGCGTACGGGCGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGAGGAT
* * * * * *
14729567 CGGCTCGGTCCCCCTCTGCGTGCTACCGATCCTACTGTCGGTCTTGCTACCACAACCCTCGATCC
258 CAGCTCGGTCCCCCTCTGCGTGCTACCGATCCCACTGCCGATCCTACTACCACAACCCTCGATCC
* * * * * * * *
14729632 GGTTGGGGTTTAGACATGGAATGAACTCTGTTTACCTAAGCCAACCCACAAAATGAGCGTGCGGG
323 AGCTGGGGCTTAGAAATGGAATGAACTCCGTATACCTAAGACAACCCACAAAATGAGCGGGCGGG
* * * *
14729697 TGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGCGAAATGGCTCGGTCCCCCTGCGTGCTGT
388 CGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGCGAAATGGCCCGGTCCCCCTGCGTGCTAT
* * * * * *
14729762 CGATCCTATGCTAGTCCTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
453 CGATCCTATGCTAGTCCTACTACCGCAACCCTCAGACCGGTCCGATCTTAGACTGGGAATGAAAT
14729827 CTGTAT
518 CTGTAT
* * * * * * *
14729833 GCTTAGACATGAAATGAACTCTGTATGCCTAAGCCAACCTAGGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
14729898 CCGACTGGAG
Statistics
Matches: 495, Mismatches: 88, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
523 125 0.25
524 363 0.73
525 7 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (523 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TAGACCAGAGAGGCAAAATGCGCAAGCCGAGGTTCAACCAGATCCCCCCGGCGTGCTGTCGATCC
TACTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCACGAAACCAGCGTACGGGCGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAG
CTCGGTCCCCCTCTGCGTGCTACCGATCCCACTGCCGATCCTACTACCACAACCCTCGATCCAGC
TGGGGCTTAGAAATGGAATGAACTCCGTATACCTAAGACAACCCACAAAATGAGCGGGCGGGCGC
TCAACCGACCGGAGAGGCAGAATGCGCAAGCCGCGAAATGGCCCGGTCCCCCTGCGTGCTATCGA
TCCTATGCTAGTCCTACTACCGCAACCCTCAGACCGGTCCGATCTTAGACTGGGAATGAAATCTG
TAT
Found at i:14730021 original size:26 final size:26
Alignment explanation
Indices: 14729992--14730044 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14729982 CCAGTCTGAT
14729992 CTTAGACTA-GGAATGAACTCCATATG
1 CTTAGAC-ACGGAATGAACTCCATATG
* *
14730018 CTTAGGCACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCATATG
14730044 C
1 C
14730045 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCATATG
Found at i:14730820 original size:318 final size:318
Alignment explanation
Indices: 14730481--14731139 Score: 740
Period size: 318 Copynumber: 2.1 Consensus size: 318
14730471 CAGCCCGATC
** * **
14730481 CCCCCCTGTGTGCTATCGATCCTGCTGTCTTAA-CCATCGATCCAG-TCTGATCTTAGACTGGGA
1 CCCCCCTACGTGCTGTCGATCCTGCTGTCGCAATCC-TCGAT-CAGATCTGATCTTAGACTGGGA
* * ** ** *
14730544 ATGAACTTCATATGCCTAAGTGAACCCATGAAACAAGCGTGAGGGTGCT-AGGTC-GACCGAAGA
64 ATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGAGGGCACTGA-GCCAG-CCGAAGA
* * * * * *
14730607 GGCATAATCCACAAGCCTGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
127 GGCATAATCCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCATACTGCCAGTCCCGCTGCCACA
* * * *
14730672 ACCC-TCGATCC-AGCT-GGGCCTTAGACATGGAATTAACTCCCTACGCCTAAGCCAACCCACAA
192 ACCCTTC-ATCCGA-CTGGGGCCTCAGACATGGAATGAACTCCCTACGCCCAAACCAACCCACAA
* * * **
14730734 AATGGGTGTAGGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGTAAGTCGGAGATCAG-CCTGGT
255 AACGGGTGTACGGACGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGTCGGAGATCAGTCC-GGT
* *
14730798 CCACCCCTACGTGCTGTCGATCCTGCTGTCGCAATCCTCGGTCTGATCTGATCTTAGACTGGGAA
1 CC-CCCCTACGTGCTGTCGATCCTGCTGTCGCAATCCTCGATCAGATCTGATCTTAGACTGGGAA
* ** *
14730863 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGAGCCAGCCGAAGAGGC
65 TGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGAGGGCACTGAGCCAGCCGAAGAGGC
*** * * *
14730928 ATAATGTGCAAGCCAGGGATCGACCTGGTCCCTCTTTGCATACTGCCAGTCCCGCTGCCACAACC
130 ATAATCCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCATACTGCCAGTCCCGCTGCCACAACC
* * **
14730993 CTTCATCCGACTGGGGGCTCAGACATGGAATGAACTCCCTATGCCCAAACCAACCCATGAAACGG
195 CTTCATCCGACTGGGGCCTCAGACATGGAATGAACTCCCTACGCCCAAACCAACCCACAAAACGG
* * * *
14731058 GTGTACGGATGCTCAGTCGGCCGGAGAGGGAGAATGCACAAGTCGGGGATCGGTCCGGT
260 GTGTACGGACGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGTCGGAGATCAGTCCGGT
* * *
14731117 CCCCCCTATGTGTTGCCGATCCT
1 CCCCCCTACGTGCTGTCGATCCT
14731140 ATTACTGGTC
Statistics
Matches: 283, Mismatches: 50, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
317 4 0.01
318 177 0.63
319 100 0.35
320 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (318 bp):
CCCCCCTACGTGCTGTCGATCCTGCTGTCGCAATCCTCGATCAGATCTGATCTTAGACTGGGAAT
GAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGAGGGCACTGAGCCAGCCGAAGAGGCA
TAATCCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCATACTGCCAGTCCCGCTGCCACAACCC
TTCATCCGACTGGGGCCTCAGACATGGAATGAACTCCCTACGCCCAAACCAACCCACAAAACGGG
TGTACGGACGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGTCGGAGATCAGTCCGGT
Found at i:14730955 original size:159 final size:157
Alignment explanation
Indices: 14730356--14730959 Score: 508
Period size: 159 Copynumber: 3.8 Consensus size: 157
14730346 CTATCGTAAC
* * **
14730356 CCTCGATCCAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GA
1 CCTCGATCCA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATG-
* * * *
14730420 AGCGTGCGGGCGCTCAGCCAGCCGAAAAGGTAGAATGCGCAAGCCAGGGA-CCAGCCCGATCCCC
64 AGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAGCCCGGT-CCC
* * **
14730484 CCCTGTGTGCTATCGATCCTGCTGTCTTAA
128 CCCTGCGTGCTGTCGATCCTGCTGTCACAA
* * ** ** **
14730514 CCATCGATCCAGTCTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGTGAACCCATGAAACA
1 CC-TCGATCCA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATG
* * * * * * *
14730579 AGCGTGAGGGTGCT-AGGTC-GACCGAAGAGGCATAATCCACAAGCCTGGGATCG-GCCCGGTCC
64 AGCGTGCGGGCGCTCA-GCCAG-CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAGCCCGGTCC
* * *
14730641 CCCTCTGCGTGCTGTCGGTCCCGCTGCCACAA
127 CCC-CTGCGTGCTGTCGATCCTGCTGTCACAA
* ** * * *
14730673 CCCTCGATCCAGCTGGGCCTTAGACAT-GGAATTAACTCCCTACGCCTAAGCCAACCCACAAAAT
1 -CCTCGATCCATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAT
* * * * * * * *
14730737 GGGTGTAG-GGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGTAAGTC-GGAGATC-AGCCTGGTC
63 GAGCGT-GCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGG-GATCGAGCCCGGTC
* *
14730799 CACCCCTACGTGCTGTCGATCCTGCTGTCGCAA
126 C-CCCCTGCGTGCTGTCGATCCTGCTGTCACAA
* * *
14730832 TCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATG
1 -CCTCGATC-CATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATG
* * * * *
14730897 AGCGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGTGCAAGCCAGGGATCGA-CCTGGTCCC
64 AGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAGCCCGGTCCC
14730960 TCTTTGCATA
Statistics
Matches: 352, Mismatches: 74, Indels: 40
0.76 0.16 0.09
Matches are distributed among these distances:
158 16 0.05
159 320 0.91
160 16 0.05
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CCTCGATCCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAG
CGTGCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAGCCCGGTCCCCCC
TGCGTGCTGTCGATCCTGCTGTCACAA
Found at i:14732854 original size:26 final size:26
Alignment explanation
Indices: 14732818--14732867 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14732808 CCACTTCGAT
14732818 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14732844 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14732868 AGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14733043 original size:26 final size:26
Alignment explanation
Indices: 14733014--14733066 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14733004 CCGGTCTGAA
14733014 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14733040 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14733066 C
1 C
14733067 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14733342 original size:159 final size:159
Alignment explanation
Indices: 14733040--14733423 Score: 371
Period size: 159 Copynumber: 2.4 Consensus size: 159
14733030 ACTCCGTATG
* *
14733040 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGC
* * *
14733105 CGATCAGAGAGGCAGAATGCGGAAGCCGGGGACCAACCTGACCCCTCCCTACGTGCTGTCGATCC
66 CGATCAAAGAGGCAGAATGCGCAAGCCGAGGACCAACCTGACCCCTCCCTACGTGCTGTCGATCC
* **
14733170 TGCTACCGTAACCCTTGCTCCGGTCCGAT
131 CGCTACCACAACCCTTGCTCCGGTCCGAT
* ** * ** *
14733199 CTTAGAC-TGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAG
* * ** * * ** *
14733263 CCGATCAAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCC-CTCTGTGTGCTGTCGGT
65 CCGATCAAAGAGGCAGAATGCGCAAGCCGAGGACCAACCT-GACCCCTCCCTACGTGCTGTCGAT
* * * * * **
14733327 CCCGTTGCCACAACCCTCGATCCGG-CTGGGG
129 CCCGCTACCACAACCCTTGCTCCGGTC-CGAT
* * * * * *
14733358 CTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTG-GCTTACGGGCACTCAG
1 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAAC-GAGCATGCGGGCACTCAG
14733422 CC
65 CC
14733424 AGCTGGAGAG
Statistics
Matches: 179, Mismatches: 41, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
158 2 0.01
159 170 0.95
160 7 0.04
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGC
CGATCAAAGAGGCAGAATGCGCAAGCCGAGGACCAACCTGACCCCTCCCTACGTGCTGTCGATCC
CGCTACCACAACCCTTGCTCCGGTCCGAT
Found at i:14734779 original size:26 final size:26
Alignment explanation
Indices: 14734750--14734802 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14734740 CCGGTCCAAT
*
14734750 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATCAACTCCGTATG
14734776 CTTAGACATGGAATCAACTCCGTATG
1 CTTAGACATGGAATCAACTCCGTATG
14734802 C
1 C
14734803 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATCAACTCCGTATG
Found at i:14735302 original size:26 final size:26
Alignment explanation
Indices: 14735251--14735303 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14735241 CCGGTCCGAT
* *
14735251 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14735277 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14735303 C
1 C
14735304 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14736014 original size:26 final size:26
Alignment explanation
Indices: 14735963--14736015 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14735953 GGCTTAAACT
*
14735963 CTTAGACTGGGAATGAAATCTATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
14735989 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCATATG
14736015 C
1 C
14736016 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:14736530 original size:26 final size:26
Alignment explanation
Indices: 14736501--14736553 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14736491 CCGATTCAAT
14736501 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14736527 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14736553 C
1 C
14736554 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14736639 original size:196 final size:196
Alignment explanation
Indices: 14736271--14736853 Score: 638
Period size: 197 Copynumber: 3.0 Consensus size: 196
14736261 GCGTGCTACC
** * * * ** *
14736271 GGTCCTACTACCGGAACCCTCGG-CCTGGTTCGATCTTAGGTTGGGAATGAACTCCATATGCTTA
1 GGTCCTACTACCACAACCTTCGGTCC-GATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
14736335 GAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGG
65 GACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
14736399 TCAGAGAGGCAGAATACATAAGCTGGGGA-TCGACTCGATCCCCCCTGCGTGCTGTCGATCCTGC
129 TCGGAGAGGCAGAATGCGTAAGCCGGGGACT-GACTCGGTCCCCCCTGCGTGCTGTCGATCCTGC
14736463 TGCT
193 TGCT
* * *
14736467 GGTCTTGCTACCATAAGCCTT-GGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
1 GGTCCTACTACCACAA-CCTTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * ** *
14736531 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGCGCTTAGCCGGT
65 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * * * * ** * *
14736596 CGGAGAGGCAGAATGGGCAAGCCGAGGACTGGCTCGGTCCCCCCCTACCTGCTACCAATCCTGTT
130 CGGAGAGGCAGAATGCGTAAGCCGGGGACTGACTCGGT-CCCCCCTGCGTGCTGTCGATCCTGCT
*
14736661 GTT
194 GCT
* * ** * *
14736664 GGTCCTACTGCCACAACCTTCGGTCCGGTTTGATCTTATACTGGGAATGAACTCCGTATGCTTAA
1 GGTCCTACTACCACAACCTTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
14736729 ACATGGAATGAACTCCATATGCCTAAGCCCACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTT
66 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
* * *
14736794 GGAGAGGCAGAATGCGTAAGCCGGGGACCGTC-CTGGTCCCTCCTGCGTGC-GATCGATCCT
131 GGAGAGGCAGAATGCGTAAGCCGGGGACTGACTC-GGTCCCCCCTGCGTGCTG-TCGATCCT
14736854 ACTATCACAA
Statistics
Matches: 317, Mismatches: 62, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
196 150 0.47
197 167 0.53
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
GGTCCTACTACCACAACCTTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
GGAGAGGCAGAATGCGTAAGCCGGGGACTGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
T
Found at i:14737229 original size:26 final size:26
Alignment explanation
Indices: 14737193--14737254 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
14737183 CTCGATCCGG
14737193 TCCG-ATG-TTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
* *
14737217 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
*
14737243 TCTGTATGCTTA
1 TCCGTATGCTTA
14737255 AGTCAACTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 26 0.79
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (26 bp):
TCCGTATGCTTAGACTAGGAATGAAC
Found at i:14738249 original size:21 final size:21
Alignment explanation
Indices: 14738223--14738268 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
14738213 GGATTGGCCT
*
14738223 GGTCCCCCTCTGCGTGCTGTC
1 GGTCCCCCTCTGCGTGCTGCC
14738244 GGTCCCCCTCTGCGTGCTGCC
1 GGTCCCCCTCTGCGTGCTGCC
14738265 GGTC
1 GGTC
14738269 TCACTGCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.00, C:0.43, G:0.30, T:0.26
Consensus pattern (21 bp):
GGTCCCCCTCTGCGTGCTGCC
Found at i:14738492 original size:26 final size:26
Alignment explanation
Indices: 14738456--14738508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14738446 CCGATCCGAT
14738456 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
14738482 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14738508 C
1 C
14738509 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14739016 original size:159 final size:156
Alignment explanation
Indices: 14738614--14739016 Score: 382
Period size: 158 Copynumber: 2.5 Consensus size: 156
14738604 GCCAATCCTG
* ** * * *
14738614 CTGTCGATCCTACTACCACAACCCTCAGTTCGCCCAGGGCTTATACATGGAATGAACTCCGTATG
1 CTGTCGATCCTGCTACCACAACCCTTGGTCCG-CCTGGGCTTAGACATGGAATGAACTCCGTATG
* * * * * *
14738679 CCTAACCCAACCCACGAAACAAGCGTGTGGGCGCTCAGCCGACTGGAGAGGCAGAATGTGCAAGC
65 CCTAAGCCAA-CCACGAAACGAGCGTGTGAGCACTCAGCCGACTGAAGAGGCAGAATGCGCAAGC
* * *
14738744 CGGGGATCAGTCTGATCCCCTCTGCGTG
129 CGGGGATCAGCCCGATCCCCTCTGCGTA
* ** * * **
14738772 CTGTAGATCCTGCTACCGTAACCTTTGATCC-CATCTGATCTTAGAC-TGGCAATGAACTCCGTA
1 CTGTCGATCCTGCTACCACAACCCTTGGTCCGC--CTGGGCTTAGACATGG-AATGAACTCCGTA
* * * * * *
14738835 TGCATAAGTCAACCAACAAAACGAGCGT-TCGAGCACTGAGCCG-GTCGAAGAGGCATAATGCGC
63 TGCCTAAGCCAACC-ACGAAACGAGCGTGT-GAGCACTCAGCCGACT-GAAGAGGCAGAATGCGC
* *
14738898 AAGCCGGGGATCGGCCCGGTCTCCCTCTGCGTA
125 AAGCCGGGGATCAGCCCGATC-CCCTCTGCGTA
* * *
14738931 CTGTCGATCCCGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGATCCTGCTACCACAACCCTTGGTCCGCCT-GGGCTTAGACATGGAATGAACTCCGTATG
14738996 CCTAAGCCAACGCACGAAACG
65 CCTAAGCCAAC-CACGAAACG
14739017 GGTGTGCGGG
Statistics
Matches: 191, Mismatches: 43, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.01
157 7 0.04
158 106 0.55
159 73 0.38
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (156 bp):
CTGTCGATCCTGCTACCACAACCCTTGGTCCGCCTGGGCTTAGACATGGAATGAACTCCGTATGC
CTAAGCCAACCACGAAACGAGCGTGTGAGCACTCAGCCGACTGAAGAGGCAGAATGCGCAAGCCG
GGGATCAGCCCGATCCCCTCTGCGTA
Found at i:14739162 original size:25 final size:26
Alignment explanation
Indices: 14739128--14739179 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14739118 CTAGTCCGAT
14739128 CTTAGACTA-GAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14739153 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14739179 C
1 C
14739180 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14739236 original size:13 final size:13
Alignment explanation
Indices: 14739218--14739243 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14739208 AACGCTCAGT
14739218 CGGTTGGAGAGGC
1 CGGTTGGAGAGGC
14739231 CGGTTGGAGAGGC
1 CGGTTGGAGAGGC
14739244 ATAATGCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.54, T:0.15
Consensus pattern (13 bp):
CGGTTGGAGAGGC
Found at i:14739628 original size:684 final size:672
Alignment explanation
Indices: 14738246--14740713 Score: 2385
Period size: 684 Copynumber: 3.6 Consensus size: 672
14738236 GTGCTGTCGG
* * * *
14738246 TCCCCCTCTGCGTGCTGCCGGTCTCACTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGA
1 TCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGA
* **
14738311 ATGAACTCCCTATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGCGCTCAGTC-GGCCGGAGAG
66 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCAGG-TAGAGAG
* * * * *
14738375 GCAGAATGTGCAAGCCAGGGATCGTCCCGGTCCCCCTACGTGTTG-CTGATCCTGCTACCCCAAC
130 GCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCGTGCTGTC-GATCCTGCTACCGCAAC
* * * * * *
14738439 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGGATGAACTTCG
194 CCTCGGTCTGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCG
* *** ** * * *
14738504 TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCGA-TCGA-AGAGGCATAATGC
259 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGCTCAGTCTAGGCCAGAGAGGCATAATGC
* * * * * * * ** * *
14738567 GTAAGTCAGGGATCAACCCGGTCCCCTTCTTCATGCTGCCAATCCTGCTGTCGATCCTACTACCA
324 GCAAGTCGGGGATCAGCCCGGTCCCCTTCTGCGTGCTGCCGATCCCGCTACCGATCCTGCTGCCA
* * * ** * * * *
14738632 CAACCCTCAGTTCGCCCAGGGCTTATACATGGAATGAACTCCGTATGCCTAACCCAACCCACGAA
389 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAGGAA
* * * * * *
14738697 ACAAGCGTGTGGGCGCTCAGCCGACTGGAGAGGCAGAATGTGCAAGCCGGGGATC-AGTCTGATC
454 TCGAGCGTGTGGGCGCTCAGCTGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGA-CCCGATC
* * * * * * * * *
14738761 CCCTCTGCGTGCTGTAGATCCTGCTACCGTAACCTTTGATCCCA-TCTGATCTTAGACTGGCAAT
518 CCCACTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGT-CCAGTCTGATCTTAGACTGGGAAT
* * * * *
14738825 GAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTTCGAGCACTGAGCCGGTCGAAGAGGCA
582 GAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCGGTCGAAGAGGCA
*
14738890 TAATGCGCAAGCCGGGGATCGGCCCGG
647 TAATGCGCAAGCC-GGGATCGGCCCGA
* * * * * *
14738917 TCTCCCTCTGCGTACTGTCGATCCCGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGA
1 TCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGA
* * *
14738982 ATGAACTCCCTATGCCTAAGCCAACGCACGAAACGGGTGTGCGGGTGCTCAG-CAGGCTAGAG-G
66 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCAGG-TAGAGAG
* * * **
14739045 GACA-AATACGCAAGCCGGGGATAGGCCCGGTCCCCCCCTGCGTGCTGTCGATCCTATTGA-CGC
130 G-CAGAATGCGCAAGCCAGGGATCGGCCCGGT--CCCCCTGCGTGCTGTCGATCCTGCT-ACCGC
* *
14739108 AACCCTCGATCT-AGTCCGATCTTAGACT-AGAATGAACTCCATATGCTTAGACTAGGGATGAAC
191 AACCCTCGGTCTGA-TCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAAC
* *
14739171 TCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGAACGCTCAGTCGGTTGGAGAGGCCGGTT
255 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGCTCAGTC---T----AGGCC----
* * * *
14739236 GGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCTTCTGCGTGTTGTCGATCCCGCTA
309 AGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCTTCTGCGTGCTGCCGATCCCGCTA
* *
14739301 TCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCT
374 CCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCT
* * * * * * * * *
14739366 AAGCCAACCCAGGAATCGAGTGCGCGAGCACCCAGCTGGCCGGGGAGGCAGAATGTACAAGCCGG
439 AAGCCAACCCAGGAATCGAGCGTGTGGGCGCTCAGCTGGCTGGAGAGGCAGAATGTGCAAGCCGG
* *
14739431 GGATCGACCC-AGTCCCTCACTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCGGTCTGA
504 GGATCGACCCGA-TCCC-CACTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCAGTCTGA
* *
14739495 TCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAG
567 TCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGAG
* * *
14739560 CCGATCGAAGAGGCATAATGCACAAGCCGGGATCGACCCGA
632 CCGGTCGAAGAGGCATAATGCGCAAGCCGGGATCGGCCCGA
* ** *
14739601 TCCCCCTCTGCGTGCTGCAGGTCCCGCTGCCACAACCCTCGGTCCTACTGGGGCATAGACATGGA
1 TCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGA
* * * *
14739666 ATGAACTCCCTATGCCTAAGCCAACCCACCAAAATGGGCGTGCGGGCGCTCAGT-TGGTGGGAGA
66 ATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACGGGCGTGCGGGCGCTCAGTCAGGT-AGAGA
* * * * * *
14739730 GGCAGAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCCTGCGTACTGTCGATCTTGCTATCGTAA
129 GGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTACCGCAA
* * * * * *
14739795 CCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGGGACGAACTCT
193 CCCTCGGTCTGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCC
* ** * * * * * * *
14739860 GTATGGCTAAACCAAACAATGAAACGAGCGTACGAGCGCTCA-ACT-GGCCAGAGAGGCAGAATG
258 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGCTCAGTCTAGGCCAGAGAGGCATAATG
* * * * * * *
14739923 CGCAAGCCGAGGATC-GACCCGGTCCCC-CCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTG
323 CGCAAGTCGGGGATCAG-CCCGGTCCCCTTC-TGCGTGCTGCCGATCCCGCTACCG--ATCC-T-
* * ** * * ** * *
14739986 GTACGGTCCGATCTTAGACTGAGAGT--GAACTTCGTATGCTTAGAC-TAGGGACGAACTCTGTA
382 G--CTG-CC-A-C-AACCCT-CG-GTCCG-GC-T-G-GGGCTTAGACAT-GGAATGAACTCTGTA
* * *
14740048 TACCTAAGCCAACCCACGAAAT-GAGCGTGTGGGCGCTCAGCTGGCTGGAGAGGCAGAATGCGCA
434 TGCCTAAGCCAACCCA-GGAATCGAGCGTGTGGGCGCTCAGCTGGCTGGAGAGGCAGAATGTGCA
* * ** * * *
14740112 AGTCGAGGATCGGTCCGATCCCCCCTGCATGCTGCCGATCCTACTGCCGCAACCCTCGGTCCAGT
498 AGCCGGGGATCGACCCGATCCCCACTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCAGT
** * * * * * *
14740177 CCCATCTTAGACTGGGAATTAACTTTGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGTCAC
563 CTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCAC
* * * * * *
14740242 TGAGCCGGTCGAAAAGGCATAATACGTAAGTCGGAATCGGCCCAA
628 TGAGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGATCGGCCCGA
* * * *
14740287 TCCCCTTTTGCGTGTTGCCGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
1 TCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGA
* * * * *
14740352 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGTC-GATCGGAAAG
66 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCAGGT-AGAGAG
* * * * * * *
14740416 GCAGAAAGCGCAAGTCGGGGACCTGCCCGGTCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACC
130 GCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACC
* * * * * * *
14740481 CTCGGTCTGATCTGATCCTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCAT
195 CTCGGTCTGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGT
** *
14740546 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-C-CGGCCAGAGAGGCATAATGCG
260 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGCTCAGTCTAGGCCAGAGAGGCATAATGCG
* * * * * * * * *
14740609 TAAGTCGTGGATCAGCACGATCCCCCTCTACGTGCTGCCGATCTCGCTACCGGTCCTGCTGCCAT
325 CAAGTCGGGGATCAGCCCGGTCCCCTTCTGCGTGCTGCCGATCCCGCTACCGATCCTGCTGCCAC
* *
14740674 AACCCTCGGTCTGGCTGGGGCTTAGACATAGAATGAACTC
390 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTC
14740714 CATATGCACA
Statistics
Matches: 1448, Mismatches: 288, Indels: 123
0.78 0.15 0.07
Matches are distributed among these distances:
670 41 0.03
671 183 0.13
672 50 0.03
673 58 0.04
674 4 0.00
675 2 0.00
676 2 0.00
677 7 0.00
678 3 0.00
679 3 0.00
680 3 0.00
681 2 0.00
682 4 0.00
683 5 0.00
684 435 0.30
685 250 0.17
686 307 0.21
687 84 0.06
688 5 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (672 bp):
TCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCAGGTAGAGAGG
CAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCC
TCGGTCTGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTGCGAACGCTCAGTCTAGGCCAGAGAGGCATAATGCGC
AAGTCGGGGATCAGCCCGGTCCCCTTCTGCGTGCTGCCGATCCCGCTACCGATCCTGCTGCCACA
ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAGGAATC
GAGCGTGTGGGCGCTCAGCTGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCC
ACTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAAC
TCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCGGTCGAAGAGGCATAAT
GCGCAAGCCGGGATCGGCCCGA
Found at i:14739667 original size:158 final size:158
Alignment explanation
Indices: 14739301--14739718 Score: 443
Period size: 159 Copynumber: 2.6 Consensus size: 158
14739291 GATCCCGCTA
*
14739301 TCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCT
1 TCGGTCCTGCTGCCACAACCCTCGGTCC-TCTGGGGCTTAGACATGGAATGAACTCTGTATGCCT
* * * * * * * * ** *
14739366 AAGCCAACCCA-GGAATCGAGTGCGCGAGCACCCAGCTGGCCGGGGAGGCAGAATGTACAAGCCG
65 AAGCCAACCCACGAAAT-GAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCG
*
14739430 GGGATCGACCCAGTCCCTCACTGCGTGCTG
129 GGGATCGACCCAGTCCCCCACTGCGTGCTG
* * **
14739460 TCGATCCTACTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCTGTATGC
1 TCGGTCCTGCTGCCACAACCCTCGGTCC--TCTGGGGCTTAGACAT-GGAATGAACTCTGTATGC
* * * * * *
14739523 ATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATGCACAAGCC
63 CTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCC
*
14739588 -GGGATCGACCC-GATCCCCCTCTGCGTGCTG
128 GGGGATCGACCCAG-TCCCCCACTGCGTGCTG
* * **
14739618 -CAGGTCCCGCTGCCACAACCCTCGGTCCTACTGGGGCATAGACATGGAATGAACTCCCTATGCC
1 TC-GGTCCTGCTGCCACAACCCTCGGTCCT-CTGGGGCTTAGACATGGAATGAACTCTGTATGCC
* *
14739682 TAAGCCAACCCACCAAAATGGGCGTGCGGGCGCTCAG
64 TAAGCCAACCCA-CGAAATGAGCGTGCGGGCGCTCAG
14739719 TTGGTGGGAG
Statistics
Matches: 212, Mismatches: 38, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 4 0.02
158 84 0.40
159 116 0.55
160 7 0.03
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
TCGGTCCTGCTGCCACAACCCTCGGTCCTCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTA
AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGG
GATCGACCCAGTCCCCCACTGCGTGCTG
Found at i:14740025 original size:185 final size:183
Alignment explanation
Indices: 14739726--14740208 Score: 615
Period size: 185 Copynumber: 2.6 Consensus size: 183
14739716 CAGTTGGTGG
* * * * **
14739726 GAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCCTGCGTACTGTCGATCTTGCTATC
1 GAGAGGCAGAATGCGCAAGCGA-GGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCC
*
14739791 GTAACCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGGGACGAA
65 GCAACCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGGGACGAA
** *
14739856 CTCTGTATGGCTAAACCAAACAATGAAACGAGCGTACGAGCGCTCAACTGGCCA
130 CTCTGTATACCTAAACCAAACAACGAAACGAGCGTACGAGCGCTCAACTGGCCA
*
14739910 GAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATCCTGCTGC
1 GAGAGGCAGAATGCGCAAG-CGAGGATCGGCCCGGTCCCCCC-TGCGTGCTGTCGATCCTGCTGC
* * * *
14739975 CGCAACCCTTGGTACGGTCCGATCTTAGACTGAGAGTGAACTTCGTATGCTTAGACTAGGGACGA
64 CGCAACCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGGGACGA
* * * * ** * * **
14740040 ACTCTGTATACCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGCTGGCTG
129 ACTCTGTATACCTAAACCAAACAACGAAACGAGCGTACGAGCGCTCAACTGGCCA
* * * * *
14740095 GAGAGGCAGAATGCGCAAGTCGAGGATCGGTCCGATCCCCCCTGCATGCTGCCGATCCTACTGCC
1 GAGAGGCAGAATGCGCAAG-CGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCC
* * * * *
14740160 GCAACCCTCGGTCCAGTCCCATCTTAGACTGGGAATTAACTTTGTATGC
65 GCAACCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAACTTCGTATGC
14740209 ATAAGTCAAC
Statistics
Matches: 257, Mismatches: 40, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
184 97 0.38
185 160 0.62
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (183 bp):
GAGAGGCAGAATGCGCAAGCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
CAACCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGGGACGAAC
TCTGTATACCTAAACCAAACAACGAAACGAGCGTACGAGCGCTCAACTGGCCA
Found at i:14740431 original size:158 final size:157
Alignment explanation
Indices: 14740023--14740487 Score: 357
Period size: 158 Copynumber: 2.9 Consensus size: 157
14740013 AACTTCGTAT
* ** * * *
14740023 GCTTAGACTAGGG-ACGAACTCTGTATACCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCA
1 GCTTAGACT-GGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14740087 GCTGGCT-GGAGAGGCAGAATGCGCAAGTCGAGGATCGGTCCGATCCCCCCTGCATGCTGCCGAT
65 G-TCGATCGGAAAGGCAGAAAGCGCAAGTCG-GAATCGGCCCAATCCCCCCTGCATGCTGCCGAT
* *
14740151 CCTACTGCCGCAACCCTCGGTCCAGTCCCA
128 CCCACTGCCACAACCCTCGGTCCAGTCCCA
* * *** * * * * * * *
14740181 TCTTAGACTGGGAATTAACTTTGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGTCACTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * * *
14740246 CCGGTCGAAAAGGCATAATA-CGTAAGTCGGAATCGGCCCAATCCCCTTTTGCGTGTTGCCGGTC
66 TCGATCGGAAAGGCAGAA-AGCGCAAGTCGGAATCGGCCCAATCCCC-CCTGCATGCTGCCGATC
* ***
14740310 CCGCTGCCACAACCCTCGGTCCAG-CTGGG
129 CCACTGCCACAACCCTCGGTCCAGTC-CCA
*
14740339 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** *
14740403 GTCGATCGGAAAGGCAGAAAGCGCAAGTCGGGGACCTGCCCGGT-CCCCCTGCGTGCTGCCGATC
65 GTCGATCGGAAAGGCAGAAAGCGCAAGTC-GGAATCGGCCCAATCCCCCCTGCATGCTGCCGATC
** *
14740467 CTGCTGCCGCAACCCTCGGTC
129 CCACTGCCACAACCCTCGGTC
14740488 TGATCTGATC
Statistics
Matches: 234, Mismatches: 65, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
157 53 0.23
158 171 0.73
159 10 0.04
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGATCGGAAAGGCAGAAAGCGCAAGTCGGAATCGGCCCAATCCCCCCTGCATGCTGCCGATCCC
ACTGCCACAACCCTCGGTCCAGTCCCA
Found at i:14740548 original size:26 final size:26
Alignment explanation
Indices: 14740499--14740549 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14740489 GATCTGATCC
* **
14740499 TAGATTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
14740525 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
14740550 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:14747010 original size:26 final size:26
Alignment explanation
Indices: 14746980--14747032 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14746970 GGCATAAAAT
14746980 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
14747006 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
14747032 C
1 C
14747033 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14747205 original size:26 final size:26
Alignment explanation
Indices: 14747176--14747228 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14747166 CCGATCTGAT
*
14747176 CTTAGACCGAGAATGTACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
* * *
14747202 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
14747228 C
1 C
14747229 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:14747583 original size:26 final size:26
Alignment explanation
Indices: 14747554--14747632 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
14747544 CCGGTCTGAT
*
14747554 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14747580 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
*
14747606 CTTAAACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14747632 C
1 C
14747633 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14748118 original size:26 final size:26
Alignment explanation
Indices: 14748082--14748134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14748072 CCGGTTCGAT
*
14748082 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14748108 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14748134 C
1 C
14748135 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14748838 original size:26 final size:26
Alignment explanation
Indices: 14748800--14748852 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14748790 GGCTCAAAAT
*
14748800 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14748826 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14748852 C
1 C
14748853 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14749236 original size:159 final size:159
Alignment explanation
Indices: 14748825--14749242 Score: 400
Period size: 159 Copynumber: 2.6 Consensus size: 159
14748815 AACTCTGTAT
* *
14748825 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCGCTCAA
* * * ** *
14748890 CCGACCGGAGAGGCAAAATGTGCAAGCCAGGGATCGGCCTGGTCCCCCCCTGTGTGCTATCGATC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCCTGCGTGCTATCGATC
*
14748955 CTGCTACCACAACCCTTCATCTGGTCTAA
131 CCGCTACCACAACCCTTCATCTGGTCTAA
* *** * * * *
14748984 TCTTAGATGGGGAATGAAC-CCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCGCTCA
* ** * * * *
14749048 GCC-AGTTGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCTCTCTGCGTGCTA-CTG
65 ACCGA-CCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCCTGCGTGCTATC-G
* * * * **
14749111 GTCCCGCTACCATAGCCC-TCGGT-TCGG-CTGGG
128 ATCCCGCTACCACAACCCTTC-ATCT-GGTCT-AA
* *
14749143 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGA-CGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAAC-GACCGTGCGGGCGCTCA
* * * *
14749207 ACCGACCGGAGCGGCAGAATGCACAAGCCGAGGATC
65 ACCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATC
14749243 GACTTGGTCC
Statistics
Matches: 203, Mismatches: 47, Indels: 18
0.76 0.18 0.07
Matches are distributed among these distances:
158 9 0.04
159 188 0.93
160 6 0.03
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCCTGCGTGCTATCGATC
CCGCTACCACAACCCTTCATCTGGTCTAA
Found at i:14749343 original size:26 final size:26
Alignment explanation
Indices: 14749303--14749353 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14749293 CGGTCTGATC
14749303 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
* *
14749329 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
14749354 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:14749686 original size:170 final size:170
Alignment explanation
Indices: 14749329--14749687 Score: 365
Period size: 171 Copynumber: 2.1 Consensus size: 170
14749319 CTCCATATGG
* * *
14749329 TTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGTTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCATGCGGGCGCTCAGCC
* *
14749394 GACTGGAAAGGCATAACGCACAAGCTGGGGATCAGCCCGATCCCCCTCTACGTGCTATCGATCCC
66 GACTCGAAAGGCAGAACGCACAAGCTGGGGATCAGCCCGATCCCCCTCTACGTGCTATCGATCCC
* *
14749459 ACTGTCGGTCCTACTACCATGACCCTCAATCCGGTTGGGGC
131 ACTGTCGGTCCTACTACCA-GACCCTCAATCCAGTTGGAGC
* * *
14749500 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAACCATGAAATGAG-AGTGTGGGTGCTCAG
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCA-TGCGGGCGCTCAG
* * * *** * *
14749563 CCGAC-CGAAGAGGCAGAATGCGCAAG-TCGGGGATCGGTTGGGT-CCCCTCTACGTGCTGTCGA
64 CCGACTCGAA-AGGCAGAACGCACAAGCT-GGGGATCAGCCCGATCCCCCTCTACGTGCTATCGA
** ** * *
14749625 TCCTGCTG-CTGGTCCTACTA-CAGCAACCCTCGGTCTAGTCT-GATC
127 TCCCACTGTC-GGTCCTACTACCAG--ACCCTCAATCCAGT-TGGAGC
14749670 TTAGACTGGGAATGAACT
1 TTAGACTGGGAATGAACT
14749688 TTGTACACTT
Statistics
Matches: 155, Mismatches: 24, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
168 1 0.01
169 4 0.03
170 67 0.43
171 82 0.53
172 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (170 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCATGCGGGCGCTCAGCC
GACTCGAAAGGCAGAACGCACAAGCTGGGGATCAGCCCGATCCCCCTCTACGTGCTATCGATCCC
ACTGTCGGTCCTACTACCAGACCCTCAATCCAGTTGGAGC
Found at i:14749707 original size:26 final size:26
Alignment explanation
Indices: 14749669--14749718 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14749659 CTAGTCTGAT
14749669 CTTAGACTGGGAATGAACTTTGTACA
1 CTTAGACTGGGAATGAACTTTGTACA
14749695 CTTAGACAT-GGAATGAACTTTGTA
1 CTTAGAC-TGGGAATGAACTTTGTA
14749719 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTACA
Found at i:14750100 original size:26 final size:26
Alignment explanation
Indices: 14750062--14750114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14750052 TCAATCCAAT
*
14750062 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14750088 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14750114 C
1 C
14750115 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14751309 original size:26 final size:26
Alignment explanation
Indices: 14751273--14751325 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14751263 ACGGTCAGAT
14751273 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14751299 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14751325 C
1 C
14751326 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14751456 original size:711 final size:706
Alignment explanation
Indices: 14749832--14751469 Score: 1777
Period size: 711 Copynumber: 2.3 Consensus size: 706
14749822 TCTTGCTGCA
* * **
14749832 GCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAAGTCTGTATGCTTAGACTGGGGATGAA
1 GCAACCCTCGGTCC-GGTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
* * * * * *
14749897 CTTCGTATGCCTAAGTCAACCCACGAATCAAACGTACGGGCGCTCAGC-GGCTGGAGAGGCCGAC
65 CTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCTAGCCGGAGAGGCCGAT
* * * * * * * * *
14749961 CGAAGAGGTAAAATGCATAAGCCGGGGATCGACCCGA-TCCCCCCTGCGTGCTATCGATCCTACT
130 CGGAGAGGCAAAATGTACAAG-CAGGGATC-AGCCTAGTCCCCCCTACGTGCTCT-GATCCTACT
* * *
14750025 GCTTGTCCTGCTGCCACAACCCTCAGTTCAATCCAATCTTAGACTGGGAATGAACTTCGTATGCT
192 GCTAGTCCTGTTGCCACAACCCTCAGTCCAATCCAATCTTAGACTGGGAATGAACTTCGTATGCT
* * * * * * *
14750090 TAGACATGGAATGAACTCCGTATGCCTAAGCCAATCAATGAAACGAGGGTGCGGGCACTTAGTCG
257 TACACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCGAGCACTCAGTCC
* * * * * *
14750155 ATCGAAAAGGCAGAATGTCCAAGTCGGGGATCGGCTCAATCCCCCCTGCGTGCTGTCGATCCTGC
322 AGCAAAAAGGCAGAATGTCCAAGTCGAGGACCAGCTCAATCCCCCCTACGTGCTGTCGATCCTGC
* *
14750220 TGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTAAGAATGAACTCCATCTACCTAAGTCAACCC
387 TACCGCAACCCTCAGTCCAGTCCGATCTTAGACTAAGAATGAACTCCATATACCTAAGTCAACCC
* * * * ** ** **
14750285 ACGAAACGAGCGTACGGGCATTGACCCAGCTAGGAGTTATAATGTGCAAGCCGGGGATCGACCCG
452 ACGAAACGAGCATACGGGCACTGACCCAGCGAAGAGGCATAATGCACAAGCCAAGGATCGACCCG
* * * * *
14750350 ATCCCCTTCTGCGTACTGTCGGTCCCGCTGCCACAACCCTCAGTTTGGCTGGGGCTTAGACATGG
517 ATCCCCTTCTGCATACTGCCAGTCCCGCTGCCACAACCATCAGTCTGGCTGGGGCTTAGACATGG
* ** * *
14750415 AATGAACTCCCTATACCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAGCCGATCGGAGAG
582 AATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAACCGACCGGAGAG
* * ** * *
14750480 GCAGAATGAACAAGCTAGGGATCGGCCCGGTCCCCCCTGTGTGCTGCCGATCTTGCTACC
647 GCAGAATGAACAAGCTAGGGATCAGCCAGGTCCCCCCTACGTGCTGCCGATCCTACTACC
** * * *
14750540 ATAACCCTTGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
1 GCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
* * * * * * *
14750605 CTTTGTATGCCTAAGTGAACCCATGAAACAAGCGTACGGGTGCTCAG-TTGATCGGGGAGACCGA
65 CTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCTAG-CCGGAGAGGCCGA
* * ** * * *
14750669 TCAGAGAGGCAAAATGTACAAGCCGAGGATC-GGTTCGATCCCCCCTTACGTGCTACCGATCTTA
129 TCGGAGAGGCAAAATGTACAAGCAG-GGATCAGCCTAG-TCCCCCC-TACGTGCT-CTGATCCTA
* * * ** *
14750733 CTGCTGGTCCTGTTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTTTGTATG
190 CTGCTAGTCCTGTTGCCACAACCCTCAGTCCAATCCAATCTTAGACTGGGAATGAACTTCGTATG
* * * *
14750798 CTTACACATGGAATGTACTCCGTATGCCTAAGCTAACCCATGAACCAAGCGTGCGAGCACTCAG-
255 CTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCGAGCACTCAGT
*
14750862 CCAGCAAAAAAGGCAGAATG-CGCAAGTCGAGGACCAGCTCGATCCCCCCTACGTGC-GATCGAT
320 CCAGC-AAAAAGGCAGAATGTC-CAAGTCGAGGACCAGCTCAATCCCCCCTACGTGCTG-TCGAT
* * * * * ** *
14750925 CCTGCTACCGTAACCCTCGGTTC-GATCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGT
382 CCTGCTACCGCAACCCTCAGTCCAG-TCCGATCTTAGACTAAGAATGAACTCCATATACCTAAGT
* * * *
14750989 CAACCCACGAAACGAGCATTCGGGCCCTGAGCCAGCCGAAGAGGCATAATGCACAAGTCAAGGAT
446 CAACCCACGAAACGAGCATACGGGCACTGACCCAG-CGAAGAGGCATAATGCACAAGCCAAGGAT
* * * *
14751054 CGGCCC-AGTCCCACTT-TGCATGCTGCCAGTCCTGCTGCCATAACCATC-GATCTGGCTGGGGC
510 CGACCCGA-TCCC-CTTCTGCATACTGCCAGTCCCGCTGCCACAACCATCAG-TCTGGCTGGGGC
* *
14751116 TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACC
572 TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAACC
* * * * * ** * * *
14751181 GGCCGGAGAGGCAGAATGCATAAGTTGGGGATCATTCAGGTCCCTCTTACGTGCTGTCGATCCTA
637 GACCGGAGAGGCAGAATGAACAAGCTAGGGATCAGCCAGGTCCCCCCTACGTGCTGCCGATCCTA
14751246 CTACC
702 CTACC
*
14751251 GCAACCCTCGGTACGGTCAGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
1 GCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
* * *
14751316 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGGGCTCAGCTAGCCGGAGAGGCCGAT
65 CTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCTAGCCGGAGAGGCCGAT
* * ** * **
14751381 CGGAGAGGCATAATGTGCAAGTCAGGGATCAGCCTAGTCTCCTTCTATGTGCTGCTGATCCCGCT
130 CGGAGAGGCAAAATGTACAAG-CAGGGATCAGCCTAGTC-CCCCCTACGTGCT-CTGATCCTACT
* * * *
14751446 ACCAGTCCTGTTGCTACCACCCTC
192 GCTAGTCCTGTTGCCACAACCCTC
14751470 GATCCGACTG
Statistics
Matches: 755, Mismatches: 154, Indels: 39
0.80 0.16 0.04
Matches are distributed among these distances:
707 1 0.00
708 98 0.13
709 43 0.06
710 256 0.34
711 344 0.46
712 13 0.02
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (706 bp):
GCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
TTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCTAGCCGGAGAGGCCGATC
GGAGAGGCAAAATGTACAAGCAGGGATCAGCCTAGTCCCCCCTACGTGCTCTGATCCTACTGCTA
GTCCTGTTGCCACAACCCTCAGTCCAATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTACA
CATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCGAGCACTCAGTCCAGCA
AAAAGGCAGAATGTCCAAGTCGAGGACCAGCTCAATCCCCCCTACGTGCTGTCGATCCTGCTACC
GCAACCCTCAGTCCAGTCCGATCTTAGACTAAGAATGAACTCCATATACCTAAGTCAACCCACGA
AACGAGCATACGGGCACTGACCCAGCGAAGAGGCATAATGCACAAGCCAAGGATCGACCCGATCC
CCTTCTGCATACTGCCAGTCCCGCTGCCACAACCATCAGTCTGGCTGGGGCTTAGACATGGAATG
AACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAACCGACCGGAGAGGCAG
AATGAACAAGCTAGGGATCAGCCAGGTCCCCCCTACGTGCTGCCGATCCTACTACC
Found at i:14752191 original size:26 final size:26
Alignment explanation
Indices: 14752155--14752207 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14752145 CCGGTCCGAT
*
14752155 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14752181 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14752207 C
1 C
14752208 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14752931 original size:26 final size:25
Alignment explanation
Indices: 14752888--14752939 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
14752878 GGCTCAAACT
* *
14752888 CTTAGACTGGGATGAACTCCTTATG
1 CTTAGACTGGAATGAACTCCATATG
14752913 CTTAGACATGGAATGAACTCCATATG
1 CTTAGAC-TGGAATGAACTCCATATG
14752939 C
1 C
14752940 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:14754144 original size:26 final size:26
Alignment explanation
Indices: 14754083--14754158 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 26
14754073 TCCGGCTGGG
14754083 GCTTAGACATGGAATGAACT---T-T
1 GCTTAGACATGGAATGAACTCCGTAT
14754105 G-TATAGAC-TGGGAATGAACTCCGTAT
1 GCT-TAGACAT-GGAATGAACTCCGTAT
14754131 GCTTAGACATGGAATGAACTCCGTAT
1 GCTTAGACATGGAATGAACTCCGTAT
14754157 GC
1 GC
14754159 CCAAGCCAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
21 2 0.04
22 16 0.35
25 1 0.02
26 25 0.54
27 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACTCCGTAT
Found at i:14754632 original size:26 final size:26
Alignment explanation
Indices: 14754603--14754655 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14754593 CCAGTCCGAT
14754603 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACTTGGG-ATGAACTCCATATG
14754629 CTTAGACTTGGGATGAACTCCATATG
1 CTTAGACTTGGGATGAACTCCATATG
14754655 C
1 C
14754656 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCATATG
Found at i:14755375 original size:159 final size:156
Alignment explanation
Indices: 14755005--14755384 Score: 354
Period size: 157 Copynumber: 2.4 Consensus size: 156
14754995 AACTCCGTAT
* * * *
14755005 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-AAAACGAGCGTGCGGGCGCTCAA
* * * * *
14755070 CCAGTCGGATAGGTAGAATGCGCAAGCCGAGGACAGGCCCGATCCCCCCTGCGTGCTATCGATCC
65 CCAGCCGGATAGGCAGAATGCGCAAGCCGAGGACAGGCCCGAACCCCCCTACGTGCTACCGATCC
* * * * *
14755135 TACTGCCGAACCCTCGGTTCGATCCCA
130 CACTGCCCAACCCTCAGTCCGATCACA
* * * * * * *
14755162 TCTTAGAC-TAGGAATAAACTCCTCT-TGCCTAAGTCAAGCCACAAATCGAACGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCA-AAAACGAGCGTGCGGGCGCTC
* * *
14755225 AACCGGCCGGAGT-GGCATAATGCGCAAGCCGGGGATCA-GCCCGAACCCCCTCTACGTGCTACC
63 AACCAGCCGGA-TAGGCAGAATGCGCAAGCCGAGGA-CAGGCCCGAACCCCC-CTACGTGCTACC
* * * * **
14755288 GGTCCCGCTGCCACAACCCTCAGTCCGGTTAGG
125 GATCCCACTGCC-CAACCCTCAGTCCGATCACA
* * *
14755321 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-AAAACGAGCGTGCGGGCGCTCA
14755385 GTCGGCTGGA
Statistics
Matches: 174, Mismatches: 41, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.01
157 87 0.50
158 25 0.14
159 60 0.34
160 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAAAACGAGCGTGCGGGCGCTCAAC
CAGCCGGATAGGCAGAATGCGCAAGCCGAGGACAGGCCCGAACCCCCCTACGTGCTACCGATCCC
ACTGCCCAACCCTCAGTCCGATCACA
Found at i:14755524 original size:26 final size:26
Alignment explanation
Indices: 14755480--14755532 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14755470 CTGGTCTGAT
14755480 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
14755506 CTTAGACTAGGG-ATTAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
14755532 C
1 C
14755533 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14756263 original size:26 final size:26
Alignment explanation
Indices: 14756212--14756264 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14756202 GGCTCAAACT
**
14756212 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14756238 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14756264 C
1 C
14756265 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14756595 original size:26 final size:26
Alignment explanation
Indices: 14756554--14756609 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14756544 CCAGTTCGAT
*
14756554 CTTAGACTAGGAATGAACTCTCTTTG
1 CTTAGACTAGGAATGAACTCTCTATG
* * *
14756580 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTCTATG
14756606 CTTA
1 CTTA
14756610 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTCTATG
Found at i:14756814 original size:26 final size:26
Alignment explanation
Indices: 14756763--14756815 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14756753 CTGGTCCAAT
* *
14756763 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCATATG
*
14756789 CTTAGAC-ATGGAATGAACACTATATG
1 CTTAGACTA-GGAATGAACACCATATG
14756815 C
1 C
14756816 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCATATG
Found at i:14757281 original size:26 final size:26
Alignment explanation
Indices: 14757252--14757304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14757242 CCGATCTGAT
14757252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14757278 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14757304 C
1 C
14757305 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14758620 original size:12 final size:12
Alignment explanation
Indices: 14758603--14758634 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
14758593 TGAGGGACAG
14758603 GGGGCCAATATA
1 GGGGCCAATATA
14758615 GGGGCCAATATA
1 GGGGCCAATATA
*
14758627 AGGGCCAA
1 GGGGCCAA
14758635 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:14758857 original size:26 final size:26
Alignment explanation
Indices: 14758819--14758871 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14758809 GGCTCAAACT
14758819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14758845 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14758871 C
1 C
14758872 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14759884 original size:26 final size:27
Alignment explanation
Indices: 14759855--14759908 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
14759845 CCAGTCCGAT
14759855 CTTAGAC-TGGGAATGAAC-TCCATATG
1 CTTAGACTTGGG-ATGAACGTCCATATG
14759881 CTTAGACTTGGGATGAACGTCCATATG
1 CTTAGACTTGGGATGAACGTCCATATG
14759908 C
1 C
14759909 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTTGGGATGAACGTCCATATG
Found at i:14760366 original size:26 final size:26
Alignment explanation
Indices: 14760315--14760367 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14760305 GGCTCAAACT
**
14760315 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14760341 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14760367 C
1 C
14760368 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14760896 original size:26 final size:26
Alignment explanation
Indices: 14760867--14760919 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14760857 CTGGTCCGAT
*
14760867 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
14760893 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
14760919 C
1 C
14760920 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14761570 original size:26 final size:26
Alignment explanation
Indices: 14761534--14761586 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14761524 TCGGTTCGAT
14761534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14761560 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14761586 C
1 C
14761587 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14762029 original size:877 final size:869
Alignment explanation
Indices: 14760340--14762172 Score: 1965
Period size: 877 Copynumber: 2.1 Consensus size: 869
14760330 AACTCTGTAT
* * *
14760340 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAGCGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAA-TGAGCGTGCGGGCGCTCAC
* * * * ** *
14760405 TCGACCGGAGAGGCAGAATACGCAAGTTGGGGATTGGCCCGATCCCACTCTGGGTGCTACCGGTT
65 TCGACCGGAGAGGCAGAATACACAAGTCGAGGATCGGCCCGATCCCACTCTGCATGCTACCGGTG
* * * **
14760470 CCGCTGCCACAACCTTCAGTTTGGTTGGGGCTTAAACATGGAATGAACTCCTTATGTCAAAGCCA
130 CCACTGCCACAACCGTCAGTCTGACTGGGGCTTAAACATGGAATGAACTCCTTATGTCAAAGCCA
* * * *
14760535 ACCCATGAAATGGGCATACGGGCCCTCAGCAGACCGGAGAGGCAGAATGCGTAAGTCAGGGATCG
195 ACCCACGAAACGGGCATACGGGCCCTCAGCAGACCAGAGAGGCAGAATGCGCAAGTCAGGGATCG
* * * * ** *
14760600 GCTCGGTCCCTCCTGCGTGCTGTCGATCCTGCTACCGCAACCTTTGACCCAGTCCGATCTTAGAT
260 GCCCGATCCCTCCTGCGTGCTGCCGATCCTGCTACAGCAACCTCAGACCCAGTCCGATCTTAGAC
* *
14760665 TAGGAATGAACTCTCTTTGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
325 TAGGAATGAACTCTCTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * **
14760730 GAGCGTACGTGCGCTCAGCCGGTCGGAGAGGCCAGCCAGAGAGGTGAAATGCACAAGCCAGGGAT
390 GAGCGTACGGGCACCCAGCAGGTCGGAGAGGCCAACCAGAGAGCAGAAATGCACAAGCCAGGGAT
** * **
14760795 CAACCCGATCCTCGCTGCATGCTACCGATTCTGCTACTGGTCCTGCTACCACAACCCTCAGTCTG
455 CAACCCGATCCTCGCAACATGCTACCGATCCTGCTACTGGTCCTGCTACCACAACCCTCAGTCCA
* *
14760860 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCAAAG
520 GTCCGATCATAGACTAGGAATGAACTCCGTATGCGTAGACATGGAATGAACTCCATATGCCAAAG
* *
14760925 CCAACCCATAAAACGAGCGAGCGGATGCTCAACCGGGTAGAGAGGTAGAATGCACAAGTCAGGGA
585 CCAACCCATAAAACGAGCGAGCGGACGCTCAACCGGATAGAGAGGTAGAATGCACAAGTCAGGGA
* ** * *
14760990 CCAACCCGGTCCCTCCATGCGTACTGTCGATCCTGTTGCCGCAACCCTCAGTCCGGTCCAATCTT
650 CCAACCCGGTCCCCCCATGCGTACTGTCGATCCTACTACCACAACCCTCAGTCCGGTCCAATCTT
* * * * * ** * * *
14761055 AGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACAAGCGTTCGGGCGTTGAGCTGA
715 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGA
* * * * *
14761120 TCGGAGAGGCATAATGAGCAAGCTGAGGATCGATCC-GAT-CCCTCTCTGCGAGCTACT-GGTCC
780 CCGAAGAGGCAGAATGAGCAAGCAGAGGATCGA-CCTGATCCCCT-TCTGCGAGCT-CTCAGTCC
*
14761182 CGCTGCCACAACCCTCGGATCGG-CTAGG
842 CGCTGCCACAACCCTCAG-TCGGACTAGG
***
14761210 GCTTAGACATGGAATGAACTATGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC-AAATGAGCGTGCGGGCGCTC-A
* * * * * **
14761275 CT-GACCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCTCGGTCCCCCTCTTCATGCTTTCGGT
64 CTCGACCGGAGAGGCAGAATACACAAGTCGAGGATCGGCCCGATCCCACTCTGCATGCTACCGGT
*
14761339 GCCACTGCCACAACCGTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCC
129 GCCACTGCCACAACCGTCAGTCTGACTGGGGCTTAAACATGGAATGAACTCCTTATG--T----C
* ** * * * *
14761404 TAAGCCAACCCACGAAACGGGGGTACGGGCGCTCAGCCGATCAGAGAGGTAGAATGCGCAAG-CT
188 AAAGCCAACCCACGAAACGGGCATACGGGCCCTCAGCAGACCAGAGAGGCAGAATGCGCAAGTC-
* * * ** * *
14761468 GGGGATCGGCCCGATCCC-CTCTGCGTGCTGCCGATCTTGCTATAGCAACCCTCAG-TTCGGTTC
252 AGGGATCGGCCCGATCCCTC-CTGCGTGCTGCCGATCCTGCTACAGCAA-CCTCAGACCCAGTCC
*
14761531 GATCTTAGACTGGGAATGAACTC-CGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
315 GATCTTAGACTAGGAATGAACTCTC-TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * ** * * *
14761595 ACCGACGAAATGAGCGTGTGGGCACCCAGCAGG-CTGGAGAGTCCAATCGGAGAGACAG-AATGC
379 ACCCACGAAACGAGCGTACGGGCACCCAGCAGGTC-GGAGAGGCCAACCAGAGAG-CAGAAATGC
* ** * * ** *
14761658 GCAAGCTGGGGATCAGCCCGGTCCCCTC-CAACATGCTGTCGATCCTGCTACTGGTCCTGCTATC
442 ACAAGCCAGGGATCAACCCGAT--CCTCGCAACATGCTACCGATCCTGCTACTGGTCCTGCTACC
* * * * * *
14761722 GCAACCCT-TGATCCAGTCTGATCATAGACTGGGAATGAACTCTGTATGCGTAGACATGGAATGG
505 ACAACCCTCAG-TCCAGTCCGATCATAGACTAGGAATGAACTCCGTATGCGTAGACATGGAATGA
* * * * ** *
14761786 ACTCCATATGTCTAAGCCAACCCATTAAACGAGCGTA-CGGGCGCTCAGTC-GATCGGAGAGGTA
569 ACTCCATATGCCAAAGCCAACCCATAAAACGAGCG-AGCGGACGCTCAACCGGAT-AGAGAGGTA
** * * * * *
14761849 GAATGCGTAAGTCGGGGACCAGCTCGGTCCCACCCAT-CGTGCTGTCGATCCTACTATCACAACC
632 GAATGCACAAGTCAGGGACCAACCCGGTCCC-CCCATGCGTACTGTCGATCCTACTACCACAACC
** ** ***
14761913 CTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAGTGAG
696 CTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAG
* * * *
14761978 CGTGCGGGTACTCAACCGGCCGAAGAGGCAGAATGCGTAAGCCAG-GGATCGACCTGATCCCCTT
761 CGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGAGCAAG-CAGAGGATCGACCTGATCCCCTT
* * * * * *
14762042 CTGTGTGCTGTCAGTCCCGCTGCCACAACTCTCAGTTGGACTGGG
825 CTGCGAGCTCTCAGTCCCGCTGCCACAACCCTCAGTCGGACTAGG
*
14762087 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTC-C
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC-AAATGAGCGTGCGGGCGCTCAC
* * *
14762151 GCCGGCCGGAGAGACAGAATAC
65 -TCGACCGGAGAGGCAGAATAC
14762173 GTATGCCAGG
Statistics
Matches: 785, Mismatches: 151, Indels: 47
0.80 0.15 0.05
Matches are distributed among these distances:
870 153 0.19
871 5 0.01
872 1 0.00
875 5 0.01
876 224 0.29
877 382 0.49
878 15 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (869 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAATGAGCGTGCGGGCGCTCACT
CGACCGGAGAGGCAGAATACACAAGTCGAGGATCGGCCCGATCCCACTCTGCATGCTACCGGTGC
CACTGCCACAACCGTCAGTCTGACTGGGGCTTAAACATGGAATGAACTCCTTATGTCAAAGCCAA
CCCACGAAACGGGCATACGGGCCCTCAGCAGACCAGAGAGGCAGAATGCGCAAGTCAGGGATCGG
CCCGATCCCTCCTGCGTGCTGCCGATCCTGCTACAGCAACCTCAGACCCAGTCCGATCTTAGACT
AGGAATGAACTCTCTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTACGGGCACCCAGCAGGTCGGAGAGGCCAACCAGAGAGCAGAAATGCACAAGCCAGGGATC
AACCCGATCCTCGCAACATGCTACCGATCCTGCTACTGGTCCTGCTACCACAACCCTCAGTCCAG
TCCGATCATAGACTAGGAATGAACTCCGTATGCGTAGACATGGAATGAACTCCATATGCCAAAGC
CAACCCATAAAACGAGCGAGCGGACGCTCAACCGGATAGAGAGGTAGAATGCACAAGTCAGGGAC
CAACCCGGTCCCCCCATGCGTACTGTCGATCCTACTACCACAACCCTCAGTCCGGTCCAATCTTA
GACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGAC
CGAAGAGGCAGAATGAGCAAGCAGAGGATCGACCTGATCCCCTTCTGCGAGCTCTCAGTCCCGCT
GCCACAACCCTCAGTCGGACTAGG
Found at i:14763144 original size:26 final size:26
Alignment explanation
Indices: 14763115--14763165 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14763105 AGGTCTGATA
*
14763115 TTAGACTAG-GAATGAACTCTGTATGG
1 TTAGACTAGAG-ATGAACTCCGTATGG
14763141 TTAGACTAGAGATGAACTCCGTATG
1 TTAGACTAGAGATGAACTCCGTATG
14763166 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGAGATGAACTCCGTATGG
Found at i:14764220 original size:26 final size:26
Alignment explanation
Indices: 14764179--14764231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14764169 CCAGTTCAAT
14764179 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14764205 CTTAGACTAGGG-ATGAGCTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
14764231 C
1 C
14764232 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14764531 original size:185 final size:183
Alignment explanation
Indices: 14764022--14764575 Score: 494
Period size: 185 Copynumber: 3.0 Consensus size: 183
14764012 CGGCTGGGGT
* * ** *
14764022 TTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCAT-GAAACGGGCGTACGGGCGCTTAG-
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-TCGAAACAAGCGTACGGGCGCTCAGT
* * ** ** * * *
14764085 CTGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATTAGCCCGGTCCCCCCTGCA--TCCTGTCGAT
65 C-GGTCGGAGAGGCAGAATGCACAAG-CGGGGATCGGCCTGAT-CCCCCT-CACGTGCTGTCGAT
* * ** * * **
14764148 CCTGCTGCCCCAACCCTCGATCCAGT-TCAATCTTAGACTGGGAATGAACTCTGTATGC
126 CCTGCTGCCGCAACCTTCGATCTGGTCT-GATCTTAGACTCGGAATGAACTCCATATGC
* * * * * * *
14764206 TTAGAC-TAGGGATGAGCTCTGTATGCCTAAGTCAACCCACAAAACAAGCGTACAGGCGCTCAGT
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACAAGCGTACGGGCGCTCAGT
* * **
14764270 CGGTCGGAGAGGCAGAATGTACAAGCTGGGGATCGGCCTGATCAACCCCT-GCGTGCTACCGATC
65 CGGTCGGAGAGGCAGAATGCACAAGC-GGGGATCGGCCTGATC--CCCCTCACGTGCTGTCGATC
* * * * *
14764334 CTACTACCGCAACCTTCAATCTGGTCTGATCTTAGATTCGGAATGATCTCCATATGC
127 CTGCTGCCGCAACCTTCGATCTGGTCTGATCTTAGACTCGGAATGAACTCCATATGC
* * *
14764391 TTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACAAGCGTGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACAAGCGTACGGGCGCTCAGTC
* *
14764456 GGTCGGTGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCTCCTCACGTGCTGTCAATCCT
66 GGTCGGAGAGGCAGAATGCACAAG-CGGGGATCGGCCTGATCCC-CCTCACGTGCTGTCGATCCT
* * * ** *
14764521 GCTGCCGCAACCCTT-GGTCTGATCTGATCTTAGACTGGGAACAAACTCCGTATGC
129 GCTGCCGCAA-CCTTCGATCTGGTCTGATCTTAGACTCGGAATGAACTCCATATGC
14764576 CTAAGTAAAC
Statistics
Matches: 291, Mismatches: 65, Indels: 27
0.76 0.17 0.07
Matches are distributed among these distances:
183 5 0.02
184 81 0.28
185 198 0.68
186 7 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (183 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACAAGCGTACGGGCGCTCAGTC
GGTCGGAGAGGCAGAATGCACAAGCGGGGATCGGCCTGATCCCCCTCACGTGCTGTCGATCCTGC
TGCCGCAACCTTCGATCTGGTCTGATCTTAGACTCGGAATGAACTCCATATGC
Found at i:14764774 original size:159 final size:159
Alignment explanation
Indices: 14764389--14764797 Score: 375
Period size: 159 Copynumber: 2.6 Consensus size: 159
14764379 ATCTCCATAT
* * * *
14764389 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCC-TCGAAACAAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAAACGAGCGTGCGAGCGCTCA
* * * * * * *
14764453 GTCGGTCGGTGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCTCCTCACGTGCTGTCAAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGCCCAGATCCCGCCTCACATGCTGTCAAT
* * **
14764518 CCTGCTGCCGCAACCCTTGGTCTGATCTGA
130 CCTGCTACCACAACCCTCAGTCTGATCTGA
* ** ** * *
14764548 TCTTAGAC-TGGGAACAAACTCCGTATGCCTAAGTAAACCCATAAAACGCA-CGAT-C-AGGCAC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG-AGCG-TGCGA-GCGC
* *
14764609 TGAGCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCAG-T-CCGCCTCTACATGCTG
62 TCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCG-CCCAGATCCCGCCTC-ACATGCTG
** * * *
14764672 TCGGTCCTGCTACCACAACCCTCAGTTTGGT-TGGG
125 TCAATCCTGCTACCACAACCCTCAGTCTGATCT-GA
* * *
14764707 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * *
14764772 CCGGTCAGAGAAGCAGAATGTGCAAG
66 CCGGTCGGAGAGGCAGAATGCGCAAG
14764798 CCGAGGATTA
Statistics
Matches: 194, Mismatches: 44, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
158 9 0.05
159 177 0.91
160 8 0.04
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGCCCAGATCCCGCCTCACATGCTGTCAATC
CTGCTACCACAACCCTCAGTCTGATCTGA
Found at i:14764905 original size:26 final size:26
Alignment explanation
Indices: 14764864--14764916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14764854 CTAGTCTGAT
*
14764864 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14764890 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14764916 C
1 C
14764917 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14765824 original size:26 final size:26
Alignment explanation
Indices: 14765795--14765847 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14765785 CCGATCCAAT
14765795 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14765821 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14765847 C
1 C
14765848 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14766250 original size:159 final size:157
Alignment explanation
Indices: 14765820--14766324 Score: 429
Period size: 158 Copynumber: 3.2 Consensus size: 157
14765810 AACTCCGTAT
* *
14765820 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * *
14765885 CCGGCTGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGATCCCCC-CTGCATGCTGTCGATC
66 -CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCG-TCCCCCTCTACATGCTGTCGATC
*
14765949 CTGCTGCCACAACCCTCCGTCCGATCTGA
129 CTGCTGCCACAACCCTCCGTCCGAGCTGA
* * * * * * * *
14765978 TCTTGGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCATTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * *
14766042 ACTGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGACTCGGTCCCCCTCTACATGCT-TCTAG
65 GCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CCGTCCCCCTCTACATGCTGTC--G
* * * *
14766106 TTCC-GCTGCCACAACCCTCTGTCTG-GCTGGG
126 ATCCTGCTGCCACAACCCTCCGTCCGAGCT-GA
* *
14766137 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GGAGTGC-GGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA-TGCGGGCGCTCA
* * * * * * **
14766200 GGCAGTCGTAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCTCCC-CTGCGTGCTACCGAT
65 -GCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GTCCCCCTCTACATGCTGTCGAT
* * * * *
14766264 CTTGTTGTCGCAACCCT-CGATCTG-GTCTGA
128 CCTGCTGCCACAACCCTCCG-TCCGAG-CTGA
*
14766294 TCTTAGAC-TGGGAATGAACTCCGTATGCCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTA
14766325 GATTGGAGAT
Statistics
Matches: 276, Mismatches: 55, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
156 5 0.02
157 55 0.20
158 138 0.50
159 73 0.26
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGTCCCCCTCTACATGCTGTCGATCCT
GCTGCCACAACCCTCCGTCCGAGCTGA
Found at i:14767628 original size:25 final size:26
Alignment explanation
Indices: 14767579--14767628 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
14767569 CTGGTTCGAT
14767579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14767605 CTTAGACTGGG-ATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14767629 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14768678 original size:159 final size:158
Alignment explanation
Indices: 14768324--14768825 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 158
14768314 ACTCCGTATG
* ** * ** *
14768324 CTTATACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCAAGCGCTAAGC
* ** * * *
14768389 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGATCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCTGATCCCCCCTGCGTGCTGCCGATCCC
* * * *
14768454 GCTTCTACAACCCTTGGTCCAGTCCAAT
131 GCTACCACAACCCTCGGTCCAATCCAAT
* * *
14768482 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAAGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCAAGCGCTAAG
* * *
14768546 CCGGTCGAAGAGGCATAATGCGCAAGCCAAGGATCGG-CTCGATCCCCCTCTGCGTGCTGCCGGT
65 CCGATCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCT-GATCCCCC-CTGCGTGCTGCCGAT
***
14768610 CCCGCTACCACAACCCTCGGTCCGAAT-GGGT
128 CCCGCTACCACAACCCTCGGTCC-AATCCAAT
* * ** *** ** * *
14768641 CTTAGTCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCAAGCGCTAAGC
* * * ** * *
14768706 C-AGCCATAGAGGCAGAATACGCAAGCCGGGGATCGGTCC-GGTCCCCCCTGCGTGCTGTCGATC
66 CGATCGA-AGAGGCAGAATGCGCAAGCCAAGGATCGG-CCTGATCCCCCCTGCGTGCTGCCGATC
* * * * * **
14768769 CTGCTATCGCAACCCTCGGTTCAGTCTGAT
129 CCGCTACCACAACCCTCGGTCCAATCCAAT
* *
14768799 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
14768826 TTAGATTGGG
Statistics
Matches: 276, Mismatches: 58, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 149 0.54
159 117 0.42
160 3 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCAAGCGCTAAGC
CGATCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCTGATCCCCCCTGCGTGCTGCCGATCCC
GCTACCACAACCCTCGGTCCAATCCAAT
Found at i:14768835 original size:26 final size:26
Alignment explanation
Indices: 14768799--14768851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14768789 TCAGTCTGAT
*
14768799 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
*
14768825 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
14768851 C
1 C
14768852 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:14769558 original size:26 final size:26
Alignment explanation
Indices: 14769520--14769572 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14769510 GGCTCAAAAT
*
14769520 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAAATCCATATG
*
14769546 CTTAGAC-ATGGAATGAAATCCGTATG
1 CTTAGACTA-GGAATGAAATCCATATG
14769572 C
1 C
14769573 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCATATG
Found at i:14769849 original size:157 final size:159
Alignment explanation
Indices: 14769555--14769849 Score: 346
Period size: 157 Copynumber: 1.9 Consensus size: 159
14769545 GCTTAGACAT
* * * * *
14769555 GGAATGAAATCCGTATGCCTAAGCTAACCCACAAAACGAGTGTGCGGGCGCTCAACCGATCGGAG
1 GGAATGAAATCCATATGCATAAGCTAACCCACAAAACGAGCGTGCAGGCGCTCAACCGATCGAAG
* * *** * * *
14769620 AGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCTCCTATGTGCTGTTGATCCTACTATCGC
66 AGGCAGAATGCGCAAGTCCGGGATCGACCCGATCCCCTCCTATGTGCTACCGATCCCACTACCAC
14769685 AACCCTCGATCCGATCAGATCTTATACTG
131 AACCCTCGATCCGATCAGATCTTATACTG
* * * * * *
14769714 GGAATGAACTCCATATGCATAAG-TCAACCCAC-GAACGAGCGTGCAGGCGCTGAGCCGGTTGAA
1 GGAATGAAATCCATATGCATAAGCT-AACCCACAAAACGAGCGTGCAGGCGCTCAACCGATCGAA
* * *
14769777 GAGGCATAATGCGCAAG-CCGGGATCGGCCCGATCCCC-CTCTATGTGCTACCGATCCCGCTACC
65 GAGGCAGAATGCGCAAGTCCGGGATCGACCCGATCCCCTC-CTATGTGCTACCGATCCCACTACC
14769840 ACAACCCTCG
129 ACAACCCTCG
14769850 GTCTGGCTGG
Statistics
Matches: 112, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
156 1 0.01
157 44 0.39
158 40 0.36
159 27 0.24
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
GGAATGAAATCCATATGCATAAGCTAACCCACAAAACGAGCGTGCAGGCGCTCAACCGATCGAAG
AGGCAGAATGCGCAAGTCCGGGATCGACCCGATCCCCTCCTATGTGCTACCGATCCCACTACCAC
AACCCTCGATCCGATCAGATCTTATACTG
Found at i:14769988 original size:157 final size:156
Alignment explanation
Indices: 14769545--14770147 Score: 417
Period size: 158 Copynumber: 3.8 Consensus size: 156
14769535 AACTCCATAT
* * * * * * * * * *
14769545 GCTTAGACAT-GGAATGAAATCCGTATGCCTAAGCTAACCCACAAAACGAGTGTGCGGGCGCTCA
1 GCTTAGA-ATGGGAATGAACTCCCTATGCCTAAGCCAACACACAAAACAAGCGTACAGGTGCTTA
* * * * * ** *
14769609 ACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCTCCTATGTGCTGTTGAT
65 GCCGAACGGAGAGGCAGAATGCGCAAGTC-GGGATTGGCCCGATCCCC-CCTGCGTGCTGTCGAT
* * *
14769674 CCTACTATCGCAACCCTC-GATCC-GATCAGA
128 CCCACTA-CCCAACCCTCAG-TCCGGCTC-GA
* * * * * * * * * * * *
14769704 TCTTATACTGGGAATGAACTCCATATGCATAAGTCAACCCAC-GAACGAGCGTGCAGGCGCTGAG
1 GCTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACACACAAAACAAGCGTACAGGTGCTTAG
*** * * * * ** **
14769768 CCGGTTGAAGAGGCATAATGCGCAAGCCGGGATCGGCCCGATCCCCCTCTATGTGCTACCGATCC
66 CCGAACGGAGAGGCAGAATGCGCAAGTCGGGATTGGCCCGATCCCCC-CTGCGTGCTGTCGATCC
* * * * *
14769833 CGCTACCACAACCCTCGGTCTGGCTGGG
130 CACTACC-CAACCCTCAGTCCGGCTCGA
** * *** *
14769861 GCTTAGACAT-GGAATGAACTCCCTATGCCTAATTCAACCCACAAAATGGGCGTACGGGTGCTTA
1 GCTTAGA-ATGGGAATGAACTCCCTATGCCTAAGCCAACACACAAAACAAGCGTACAGGTGCTTA
* *
14769925 GTCGAACGGAGAGGCAGAAGGCGCAAGTCGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 GCCGAACGGAGAGGCAGAATGCGCAAGTCGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
14769990 TACTGCCCAACCCTCAGTCCGGTTCGA
130 CACTACCCAACCCTCAGTCCGGCTCGA
* * * ** * **
14770017 TCTTAGATTGGGAATTAACTCTGTATGCCTAAGCCAACATACAAAACAAGCGTGTAGGTGCTTAG
1 GCTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACACACAAAACAAGCGTACAGGTGCTTAG
* *
14770082 CCGATCGGAGAGGCAGAATGTGCAAGTCAGGGATTGGCCCTG-TCCCCCCTTGCGTGCTGTCGAT
66 CCGAACGGAGAGGCAGAATGCGCAAGTC-GGGATTGGCCC-GATCCCCCC-TGCGTGCTGTCGAT
14770146 CC
128 CC
14770148 TACTGCTGGT
Statistics
Matches: 350, Mismatches: 83, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
155 1 0.00
156 89 0.25
157 113 0.32
158 115 0.33
159 32 0.09
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
GCTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACACACAAAACAAGCGTACAGGTGCTTAG
CCGAACGGAGAGGCAGAATGCGCAAGTCGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCC
ACTACCCAACCCTCAGTCCGGCTCGA
Found at i:14770240 original size:26 final size:26
Alignment explanation
Indices: 14770189--14770241 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14770179 CCGGTCTGAT
***
14770189 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTGCCTATG
14770215 CTTAGACAT-GGAATGAACTGCCTATG
1 CTTAGAC-TGGGAATGAACTGCCTATG
14770241 C
1 C
14770242 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTGCCTATG
Found at i:14771522 original size:159 final size:159
Alignment explanation
Indices: 14771125--14771554 Score: 454
Period size: 159 Copynumber: 2.7 Consensus size: 159
14771115 AACTCCACTT
*
14771125 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
14771190 TCGATTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCTTCTATGTGCTATCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTCTACATGCTATCGATC
** * * *
14771255 CTGCTGCCGCAACCCTCGGTCTGATCTAA
131 CCACTACCACAACCCTCGGTCTGAGCTAA
* ** * * * *
14771284 TCTTAGAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** ** * * * * * * *
14771348 GCTGGCCAAACAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCACC-TCTGCATGCTGTCGG
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC-CCTTCTACATGCTATCGA
* **
14771412 TCCCACTACCACAACCCTCGGTTTG-GCTGGG
129 TCCCACTACCACAACCCTCGGTCTGAGCT-AA
* * *
14771443 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCCGTACGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* *
14771507 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGTGATCGACCCAGTCCCC
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC
14771555 CCTGCGTGCT
Statistics
Matches: 212, Mismatches: 54, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
158 6 0.03
159 203 0.96
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTCTACATGCTATCGATC
CCACTACCACAACCCTCGGTCTGAGCTAA
Found at i:14771631 original size:26 final size:26
Alignment explanation
Indices: 14771602--14771654 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14771592 CCAGTTCGAT
*
14771602 CTTAGACTATGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14771628 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14771654 C
1 C
14771655 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14771995 original size:26 final size:26
Alignment explanation
Indices: 14771957--14772012 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
14771947 CTGGTCTGAT
14771957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14771983 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14772009 CTTA
1 CTTA
14772013 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14772124 original size:184 final size:184
Alignment explanation
Indices: 14771798--14772159 Score: 473
Period size: 184 Copynumber: 2.0 Consensus size: 184
14771788 TCCGACTGGG
*
14771798 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGAGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGAGCGGGCACTCAG
* * *
14771863 CCGACCAGAAAGGCAGAATGCGTAAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCAGTCGATCC
66 CCGACCAGAAAGGCAGAATACGTAAGCCAGGGACCAGCCCGATCCCCCCTGCGTGCAGTCGATCC
* **
14771928 TGCTACCGCAACCCTCGA-TCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCT-GAGTCTGGTTC-GATCTTAGACTAAGAATGAACTCCGTAT
* *
14771982 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGC-ATGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGA-GCGGGCACTCA
* ** * * * * * *
14772046 GCTGGTCGGAGAGGCAGAATACGTAAGCC-GAGGACC-GATCCGGTCCCCCCTGCGTGCTGTTGA
65 GCCGACCAGAAAGGCAGAATACGTAAGCCAG-GGACCAG-CCCGATCCCCCCTGCGTGCAGTCGA
*
14772109 TCCTACTATCGCAACCCTGAGTCTGGTTCGATCTTAGACTAAGAATGAACT
128 TCCTACTACCGCAACCCTGAGTCTGGTTCGATCTTAGACTAAGAATGAACT
14772160 ATGTATGCCT
Statistics
Matches: 154, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
183 5 0.03
184 147 0.95
185 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGAGCGGGCACTCAG
CCGACCAGAAAGGCAGAATACGTAAGCCAGGGACCAGCCCGATCCCCCCTGCGTGCAGTCGATCC
TACTACCGCAACCCTGAGTCTGGTTCGATCTTAGACTAAGAATGAACTCCGTAT
Found at i:14773794 original size:26 final size:26
Alignment explanation
Indices: 14773756--14773808 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14773746 CTGGTCTGAT
14773756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14773782 CTTAGACAT-GGAATGAAGTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14773808 C
1 C
14773809 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14774300 original size:26 final size:26
Alignment explanation
Indices: 14774256--14774308 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14774246 CTGGTCTGAT
*
14774256 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
14774282 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
14774308 C
1 C
14774309 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:14776211 original size:159 final size:159
Alignment explanation
Indices: 14775918--14776215 Score: 397
Period size: 159 Copynumber: 1.9 Consensus size: 159
14775908 TGTCGATCCC
* * **
14775918 GCTGTCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATAAACTCTGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATAAACTCCCTAT
** * *
14775983 GCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTTAGCCGATCGGAGAGGTAGAATGAGGAAA
66 GCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGAGGAAA
14776048 CCGGGGATCAGCTCGGTCCCCTTCTACGT
131 CCGGGGATCAGCTCGGTCCCCTTCTACGT
* *
14776077 GCTGTCGGT-CTCGCTGCCATAACCCTCAGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCT
1 GCTGTCGGTCCT-GCTGCCACAACCCTCAGTCCAG-CTGGGGCTTAGACATGGAATAAACTCCCT
* * *
14776140 ATGCCTAAGCCAACCCACAAAAT-AGGTGTGTGGGTGCTCAGCC-AGTCGGAGAGGCAGAATGCG
64 ATGCCTAAGCCAACCCACAAAATGA-GCGTGCGGGTGCTCAGCCGA-TCGGAGAGGCAGAATGAG
* *
14776203 TAAGCCGGGGATC
127 GAAACCGGGGATC
14776216 GATCCGATCC
Statistics
Matches: 120, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
158 5 0.04
159 115 0.96
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.20
Consensus pattern (159 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATAAACTCCCTAT
GCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGAGGAAA
CCGGGGATCAGCTCGGTCCCCTTCTACGT
Found at i:14778413 original size:26 final size:26
Alignment explanation
Indices: 14778384--14778436 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14778374 CCGATTTGAT
*
14778384 CTTAGACTCGGAATAAACTTTGTATG
1 CTTAGACTCGGAATAAACTTCGTATG
* * *
14778410 CTTAGATTCGGGATGAACTTCGTATG
1 CTTAGACTCGGAATAAACTTCGTATG
14778436 C
1 C
14778437 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTCGGAATAAACTTCGTATG
Found at i:14778804 original size:26 final size:26
Alignment explanation
Indices: 14778753--14778805 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14778743 CCGGTCCAAT
**
14778753 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14778779 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14778805 C
1 C
14778806 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14778809 original size:185 final size:184
Alignment explanation
Indices: 14778593--14778963 Score: 496
Period size: 185 Copynumber: 2.0 Consensus size: 184
14778583 TCCGACTAGG
** *
14778593 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTC-G
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* *
14778657 ACCGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATTG-GC-CTGATCCCCCCTTGTGTGCTGCCA
66 -CCGGCCGGAGAGGCAAAATGCGTAAGCCAGGGA-TGAGCTC-GATCCCCCC-TGCGTGCTGCCA
* * * * *
14778720 ATCCTGCTACTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTAT
127 ATCCTGCTACTACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATAAACTCCGTAT
* * * *
14778778 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * * *
14778843 TCGGCCGGAGGGGCAGAATGCGTAAGCCAGGGATGAGCTCGATCCCTCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAAAATGCGTAAGCCAGGGATGAGCTCGATCCCCCCTGCGTGCTGCCAATCC
*
14778908 TGCTACTACAACCCTCAGACTGGTCCAATCTTAGACTGGGAATAAACTCCGTAT
131 TGCTACTACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATAAACTCCGTAT
14778962 GC
1 GC
14778964 CTAAGTCAAC
Statistics
Matches: 162, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
184 65 0.40
185 95 0.59
186 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGTAAGCCAGGGATGAGCTCGATCCCCCCTGCGTGCTGCCAATCC
TGCTACTACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATAAACTCCGTAT
Found at i:14779122 original size:159 final size:158
Alignment explanation
Indices: 14778778--14779193 Score: 460
Period size: 159 Copynumber: 2.6 Consensus size: 158
14778768 AACTCTGTAT
* * *
14778778 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
14778843 TCGGCCGGAGGGGCAGAATGCGTAAGCCAGGGATGAGCTCGATCCCTCCTGCGTGCTGTCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCACCCCGATCCCCCCTACGTGCTGCCGATCC
*
14778908 TGCTACTACAACCCTCAGACTGGTCCAA
131 TGCTACCACAACCCTCAGACTGGTCCAA
* * * * * *
14778936 TCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
14779000 ACCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCACCCCGATCCCCCTCTACGTGCTGCC-AG
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCACCCCGATCCCCC-CTACGTGCTGCCGA-
* * * ****
14779064 TCCTGCTGCCACAACCCTCGGTCTGGTTGGG
128 TCCTGCTACCACAACCCTCAGACTGGTCCAA
* * *
14779095 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
14779160 CCGGGC-AGAGAGGCAGAATGCGCAAGCCGGGGAT
66 CCGGCCGA-AGAGGCAGAATGCGCAAGCCAGGGAT
14779194 TGGCTCGGTC
Statistics
Matches: 210, Mismatches: 43, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 93 0.44
159 115 0.55
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCACCCCGATCCCCCCTACGTGCTGCCGATCC
TGCTACCACAACCCTCAGACTGGTCCAA
Found at i:14779206 original size:159 final size:158
Alignment explanation
Indices: 14778778--14779280 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
14778768 AACTCTGTAT
* * *
14778778 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
14778842 GTCGGCCGGAGGGGCAGAATGCGTAAGCCAGGGA-TGAGCTCGATCCCTCCTGCGTGCTGTCGAT
65 GCCGGACAGAGAGGCAGAATGCGCAAGCCAGGGATTG-GCTCGATCCCCCCTGCGTGCTGTCGAT
* * * * * *
14778906 CCTGCTACTACAACCCTCAGACTGGTCCAA
129 CCTGCTGCCACAACCCTCGGTCTGGTTCGA
* * * * * * *
14778936 TCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAA
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *** * * *
14779001 CC-GACCGAAGAGGCATAATGCGCAAGCCAGGGATCACCCCGATCCCCCTCTACGTGCTG-CCAG
66 CCGGACAG-AGAGGCAGAATGCGCAAGCCAGGGATTGGCTCGATCCCCC-CTGCGTGCTGTCGA-
* *
14779064 TCCTGCTGCCACAACCCTCGGTCTGGTTGGG
128 TCCTGCTGCCACAACCCTCGGTCTGGTTCGA
* * *
14779095 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
14779159 GCCGGGCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTCCCCCCTGCGTACTGTCGATC
65 GCCGGACAGAGAGGCAGAATGCGCAAGCCAGGGATTGGCTCGATCCCCCCTGCGTGCTGTCGATC
* * ** * *
14779224 CTACTGTCGTAACCCTCGGTCTGGTTTGC
130 CTGCTGCCACAACCCTCGGTCTGGTTCGA
*
14779253 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAATGAACTCCATATGC
14779281 TTAGACTAGG
Statistics
Matches: 276, Mismatches: 60, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 144 0.52
159 123 0.45
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGACAGAGAGGCAGAATGCGCAAGCCAGGGATTGGCTCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCTGGTTCGA
Found at i:14779295 original size:26 final size:26
Alignment explanation
Indices: 14779254--14779306 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14779244 CTGGTTTGCT
14779254 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14779280 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
14779306 C
1 C
14779307 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14784414 original size:26 final size:26
Alignment explanation
Indices: 14784375--14784425 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14784365 CTCAAAATCA
14784375 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* * *
14784401 TAGATTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14784426 CTATGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14785183 original size:159 final size:157
Alignment explanation
Indices: 14784770--14785185 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 157
14784760 AACTCCATGT
** * *
14784770 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
14784835 TCGGCCGTAGAGGCAGAATGAGCTAGTCGGGGATCAACCCGATCACCCATACGTGCTGTCGATCC
66 TCAGCCGAAGAGGCAGAATGA-CAAGTCGGGGATCAACCCGATCACCCATACGTGCTGCCGATCC
* *** * *
14784900 TACGGTTGCAACCCTCGGTCCGGTTCGA
130 CACGGCCACAACCCTCGGTCCGGCTAGA
* * * * * * *
14784928 TCTTAGTC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCACAAAATTAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
14784992 G-CCGACCAAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTC-CCC-TTCTGCATGCTGCC
65 GTCAG-CCGAAGAGGCAGAATG-ACAAGTCGGGGATCAACCCGATCACCCATAC-G--TGCTGCC
* * *
14785054 GATCCCGCTGCCACAACCCTCGGTCCGGCTAGG
125 GATCCCACGGCCACAACCCTCGGTCCGGCTAGA
* * *
14785087 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* *
14785152 TCAGTCGGAGAGGCAGAATGCACAAGTCGGGGAT
66 TCAGCCGAAGAGGCAGAATG-ACAAGTCGGGGAT
14785186 TGGCCTAGTC
Statistics
Matches: 201, Mismatches: 49, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 83 0.41
159 106 0.53
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCAGCCGAAGAGGCAGAATGACAAGTCGGGGATCAACCCGATCACCCATACGTGCTGCCGATCCC
ACGGCCACAACCCTCGGTCCGGCTAGA
Found at i:14791863 original size:26 final size:26
Alignment explanation
Indices: 14791821--14791873 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14791811 GGCTCAAAAT
*
14791821 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14791847 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14791873 C
1 C
14791874 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14792741 original size:26 final size:26
Alignment explanation
Indices: 14792699--14792751 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14792689 TCGGTTTGAT
*
14792699 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14792725 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14792751 C
1 C
14792752 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14793068 original size:159 final size:156
Alignment explanation
Indices: 14792724--14793085 Score: 390
Period size: 156 Copynumber: 2.3 Consensus size: 156
14792714 AACTCCGTAT
*
14792724 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * *
14792789 TCGGTCGGAGAGGTAGAATGCGCAAGCCAAGGATCGCTCGATCCCCTTACGTGCTGTCGATCCTG
66 CCAATCAGAGAGGCAGAATGCGCAAGCCAAGGATCGCCCGATCCCCTTACATGCTGCCGATCCCG
***
14792854 CTGCTGTAACCCTCGGTCTGGTCTGA
131 CTGCCACAACCCTCGGTCTGGTCTGA
* * * * * *
14792880 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
14792944 GCCAATCAGAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCTCCCTCTGCATGCTGCC-AG
65 GCCAATCAGAGAGGCAGAATGCGCAAGCCAAGGATC-GCCCGATC-CCCT-TACATGCTGCCGA-
* *
14793008 TCCCGCTGCCACAACCCTTGGTCTGGT-TGGG
126 TCCCGCTGCCACAACCCTCGGTCTGGTCT-GA
* *
14793039 GCTTACACATGGAATGAACTACC-TATGCCTAAGCCAACCCACAAAAC
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAAC
14793086 AGGCATGCAG
Statistics
Matches: 168, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
155 1 0.01
156 83 0.49
157 7 0.04
158 6 0.04
159 68 0.40
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAATCAGAGAGGCAGAATGCGCAAGCCAAGGATCGCCCGATCCCCTTACATGCTGCCGATCCCG
CTGCCACAACCCTCGGTCTGGTCTGA
Found at i:14793940 original size:26 final size:26
Alignment explanation
Indices: 14793902--14793952 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14793892 GGCTCAAAAT
14793902 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCTGTATC
14793928 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCTGTAT
14793953 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATC
Found at i:14794285 original size:158 final size:157
Alignment explanation
Indices: 14793928--14794427 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 157
14793918 ACTCTGTATC
* * * * *
14793928 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * * *
14793993 CGACCGAAGAGGCAAAATGTGCAAGCCGGGGATCGGCCGGTCCCCCGTGTGTGCTGTCCATCCTG
66 CGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGCCCGGTCCCCCGTGCGTGCTGTCCATCCTG
** *
14794058 CTGCTGCAACCCTCAGTTCGGTCCAAT
131 CTGCCACAACCCTCAGTTCGGTCCAAG
* * * * *
14794085 CTTAAAC-TGAGAATGAACTCCGTATGCATAAGTCAACGCATGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * *
14794149 TCGACCGAAGAGGCATAATGCGCAGGCCGAGGATCGACCCGGTCCGCTC-TGCGTGCTG-CCGGT
65 TCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCG-CCCGGTCC-CCCGTGCGTGCTGTCC-AT
* * *
14794212 CTTGCTGCCACAACCCTCAG-TCTGG-CTAGGG
127 CCTGCTGCCACAACCCTCAGTTC-GGTCCA-AG
* * * * * * **
14794243 CTTAGACATGGAATAAACTCCCTAGGCCTAAGCCAACCCATGAAACGGGTGCGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * * * * * * * * *
14794308 CGGCC-AGAGAGGCAGAATGGGCAAGTCGGGGATTGGCCAGGTCCCCCATGCGTGCTGTCGATCT
66 CGACCGA-AGAGGCAAAATGCGCAAGCCGAGGA-TCGCCCGGTCCCCCGTGCGTGCTGTCCATCC
* * * * *
14794372 TGCTGCCGCAACCCTC-GGTCTGATCCGAT
129 TGCTGCCACAACCCTCAGTTC-GGTCCAAG
*
14794401 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14794428 TTAAACTGGG
Statistics
Matches: 272, Mismatches: 57, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 94 0.35
158 168 0.62
159 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
CGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGCCCGGTCCCCCGTGCGTGCTGTCCATCCTG
CTGCCACAACCCTCAGTTCGGTCCAAG
Found at i:14794689 original size:158 final size:158
Alignment explanation
Indices: 14794439--14794967 Score: 446
Period size: 158 Copynumber: 3.3 Consensus size: 158
14794429 TAAACTGGGG
* * ** * * *
14794439 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGTGCTCAGCCGACCGGAGAGG
* * * * * *
14794504 CAGAATGCGTAAG-TCGAGGATCAGCCTGGTCCCCTTCTGCGTGCTACCGATCCCACTACCACAA
66 CAGAATGCGCAAGCT-GGGGACCAGCCTGATCCCC-TCTGCGTGCTACCGGTCACACTACCACAA
14794568 CCCTCGGTTCGACTGGGGCTTAGACATGGA
129 CCCTCGGTTCGACTGGGGCTTAGACATGGA
* * **
14794598 ATGAACTCCCTATGCCTAAG-CAACCCATAAAATGGGCATGCGGGCT-CTCAGCCGGTCGGAGAG
1 ATGAACTCCCTATGCCTAAGTCAACCCATAAAACGAGCATGCGGG-TGCTCAGCCGACCGGAGAG
* * * *** ** **
14794661 GCAGAATGCGCAAGCTGGGGACCGGCCTGATCCCCCCTGCGTGCTATCGGTCTTGCTGTCGTAAC
65 GCAGAATGCGCAAGCTGGGGACCAGCCTGATCCCCTCTGCGTGCTACCGGTCACACTACCACAAC
* **
14794726 CCTCGGTCCGA-TCGGATCTTAGAC-TGGGA
130 CCTCGGTTCGACT-GGGGCTTAGACAT-GGA
* ** * * * * * *
14794755 ATGAACTCCTTATGCAAAAGTCAACCCATAAAATGAGCGTACGGGTGCTGAACCGACCGAAGAGG
1 ATGAACTCCCTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGTGCTCAGCCGACCGGAGAGG
* * * * * * * *
14794820 CATAATGTGCAAGCCGGGG-CTCAGCCCGATCCCCCTCTGTGTGCTGCTGGT-ACAGTTACCACA
66 CAGAATGCGCAAGCTGGGGAC-CAGCCTGAT-CCCCTCTGCGTGCTACCGGTCACA-CTACCACA
* *
14794883 ACCCTCGG-TCTAGCTAGGGCTTAGACATGGA
128 ACCCTCGGTTCGA-CTGGGGCTTAGACATGGA
* *
14794914 ATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGCGGGTGCTCAGCC
1 ATGAACTCCCTATGCCTAAGTCAACCCATAAAACGA-GCATGCGGGTGCTCAGCC
14794968 AGCAGGAAAG
Statistics
Matches: 284, Mismatches: 73, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
156 2 0.01
157 61 0.21
158 121 0.43
159 98 0.35
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGTCAACCCATAAAACGAGCATGCGGGTGCTCAGCCGACCGGAGAGG
CAGAATGCGCAAGCTGGGGACCAGCCTGATCCCCTCTGCGTGCTACCGGTCACACTACCACAACC
CTCGGTTCGACTGGGGCTTAGACATGGA
Found at i:14794717 original size:342 final size:342
Alignment explanation
Indices: 14794085--14794769 Score: 860
Period size: 342 Copynumber: 2.0 Consensus size: 342
14794075 TCGGTCCAAT
* * * *
14794085 CTTAAACTGAGAATGAACTCCGTATGCATAAGTCAACGCATGAAACGAGCGTGCGGGTGCTGAGT
1 CTTAAACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * * **
14794150 CGACCGAAGAGGCATAATGCGCAGGCCGAGGATCGACCCGGTCCGCTCTGCGTGCTGCCGGTCTT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTGCGTGCTACCGATCCC
* * *
14794215 GCTGCCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATAAACTCCCTAGGCCTAAGCCAAC
131 ACTACCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATAAACTCCCTAGGCCTAAGCCAAC
* * * **
14794280 CCATGAAACGGGTGCGCGGGTGCTCAACCGGCCAGAGAGGCAGAATGGGCAAGTCGGGGATTGGC
196 CCATAAAACGGGTGCGCGGCTGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGGC
* * *
14794345 CAGGTCCCCCATGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTG
261 CAGATCCCCCATGCGTGCTATCGATCTTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTG
14794410 GGAATGAACTCCATATG
326 GGAATGAACTCCATATG
* * * * *
14794427 CTTAAACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAAACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * *
14794492 CGACCGGAGAGGCAGAATGCGTAAGTCGAGGATC-AGCCTGGTCCCCTTCTGCGTGCTACCGATC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCC-TCTGCGTGCTACCGATC
* * * *
14794556 CCACTACCACAACCCTCGGT-TCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG-C
129 CCACTACCACAACCCTCAGTCT-GACTAGGGCTTAGACATGGAATAAACTCCCTAGGCCTAAGCC
* * * *
14794619 AACCCATAAAATGGGCATGCG-GGCT-CTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CTGGGG
193 AACCCATAAAACGGG--TGCGCGGCTGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGTC-GGGG
* * * * * *
14794681 ACCGGCCTGATCCCCCCTGCGTGCTATCGGTCTTGCTGTCGTAACCCTCGGTCCGATCGGATCTT
255 ACCGGCCAGATCCCCCATGCGTGCTATCGATCTTGCTGCCGCAACCCTCGGTCCGATCCGATCTT
*
14794746 AGACTGGGAATGAACTCCTTATG
320 AGACTGGGAATGAACTCCATATG
14794769 C
1 C
14794770 AAAAGTCAAC
Statistics
Matches: 291, Mismatches: 46, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
341 2 0.01
342 216 0.74
343 69 0.24
344 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (342 bp):
CTTAAACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTGCGTGCTACCGATCCC
ACTACCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATAAACTCCCTAGGCCTAAGCCAAC
CCATAAAACGGGTGCGCGGCTGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGGC
CAGATCCCCCATGCGTGCTATCGATCTTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTG
GGAATGAACTCCATATG
Found at i:14794990 original size:159 final size:154
Alignment explanation
Indices: 14794559--14794994 Score: 368
Period size: 159 Copynumber: 2.8 Consensus size: 154
14794549 ACCGATCCCA
*
14794559 CTACCACAACCCTCGGT-TCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACC
1 CTACCACAACCCTCGGTCTCG-CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACC
* * * *
14794623 CATAAAATGGGCATGCGGGCT-CTCAGCCGGTC-GGAGAGGCAGAATGCGCAAGCTGGGGACCGG
65 CATAAAA--GGCATGCGGG-TGCTCAGCC-G-CAGGAAAGGCAGAATGTGCAAGCCGGGGACCAG
* *
14794686 CCTGATCCCCCCTGCGTGCTATCGGTCTTG
125 CCCGATCCCCCCTGCGTGCTATCGGTCTAG
** ** * * * * **
14794716 CTGTCGTAACCCTCGGTC-CGATCGGATCTTAGAC-TGGGAATGAACTCCTTATGCAAAAGTCAA
1 CTACCACAACCCTCGGTCTCGCTAGG-GCTTAGACAT-GGAATGAACTCCCTATGCCTAAG-CAA
* * * * * *
14794779 CCCATAAAATGAGCGTACGGGTGCTGAACCG-ACCGAAGAGGCATAATGTGCAAGCCGGGG-CTC
63 CCCATAAAA-G-GCATGCGGGTGCTCAGCCGCA-GGAA-AGGCAGAATGTGCAAGCCGGGGAC-C
* *
14794842 AGCCCGATCCCCCTCTGTGTGCT-GCTGGTAC-AG
123 AGCCCGATCCCCC-CTGCGTGCTATC-GGT-CTAG
* *
14794875 TTACCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCTCGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAACC
*
14794940 CATGAAACAGGCATGCGGGTGCTCAGCCAGCAGGAAAGGTAGAATGTGCAAGCCG
65 CAT-AAA-AGGCATGCGGGTGCTCAGCC-GCAGGAAAGGCAGAATGTGCAAGCCG
14794995 ATCCTATTGC
Statistics
Matches: 215, Mismatches: 45, Indels: 36
0.73 0.15 0.12
Matches are distributed among these distances:
156 4 0.02
157 48 0.22
158 56 0.26
159 91 0.42
160 14 0.07
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (154 bp):
CTACCACAACCCTCGGTCTCGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACCC
ATAAAAGGCATGCGGGTGCTCAGCCGCAGGAAAGGCAGAATGTGCAAGCCGGGGACCAGCCCGAT
CCCCCCTGCGTGCTATCGGTCTAG
Found at i:14795965 original size:26 final size:26
Alignment explanation
Indices: 14795924--14795976 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14795914 CCAGTCCGAT
14795924 CTTAGACAGGGAATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTTTGTATG
* *
14795950 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTTTGTATG
14795976 C
1 C
14795977 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTTTGTATG
Found at i:14797542 original size:26 final size:26
Alignment explanation
Indices: 14797513--14797565 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14797503 ATGGTCTGAT
*
14797513 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14797539 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14797565 C
1 C
14797566 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14799480 original size:26 final size:25
Alignment explanation
Indices: 14799445--14799494 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
14799435 CTCAAAATCA
14799445 TAGACTGGAATGAACTCCGTATGCT
1 TAGACTGGAATGAACTCCGTATGCT
*
14799470 TAGACATGGAATGAACTTCGTATGC
1 TAGAC-TGGAATGAACTCCGTATGC
14799495 CTAAGCCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (25 bp):
TAGACTGGAATGAACTCCGTATGCT
Found at i:14799981 original size:26 final size:26
Alignment explanation
Indices: 14799943--14799995 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14799933 TCAGTTTGAT
*
14799943 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14799969 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14799995 C
1 C
14799996 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.