Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 89 of 138
Found at i:14800270 original size:159 final size:158
Alignment explanation
Indices: 14799969--14800470 Score: 539
Period size: 159 Copynumber: 3.2 Consensus size: 158
14799959 ACTGCGTATG
*
14799969 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* ** * * **
14800034 CGATCGGAGAGGCAGAATGCA-CAAGTTGGGGATCGTCTCGGTCCCTCCCTGCGTCCTGTTGATC
66 CGACCGGAGAGGCAGAATG-AGCAAGTCAGGGATCGGCTCGGTCCC-CCCTGCGTGCTGCCGATC
* * *
14800098 CTGCTACTGCAACCCTCGGTCCGGTCCAAT
129 CTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * * * *
14800128 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTACGAGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
14800192 CCGACCGGAGAGGCATAATGAGCAAGTCAGGGATCGGCTCAGTCCCCCTCTGCGTGCTGCCGATC
65 TCGACCGGAGAGGCAGAATGAGCAAGTCAGGGATCGGCTCGGTCCCCC-CTGCGTGCTGCCGATC
* * * * *
14800257 CCGCTGCCACAACCCTCGGTCC-GACTGGAG
129 CTGCTGCCGCAACCCTCGGTCCGGTC-CGAT
* * * *
14800287 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * ** * * *
14800352 CGACCGGAGAGGCAGAATGCGTAAGTCA-GGATTAGTTCGGTCCCCCCTACGTGCTACCGATCCT
66 CGACCGGAGAGGCAGAATGAGCAAGTCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCT
* * *
14800416 GCTGCCGCAACCC-CTGATCCGATTCGAT
131 GCTGCCGCAACCCTC-GGTCCGGTCCGAT
14800444 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14800471 TTAGAATGGG
Statistics
Matches: 279, Mismatches: 56, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
156 2 0.01
157 57 0.20
158 20 0.07
159 199 0.71
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGACCGGAGAGGCAGAATGAGCAAGTCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCGCAACCCTCGGTCCGGTCCGAT
Found at i:14800421 original size:501 final size:501
Alignment explanation
Indices: 14799445--14800554 Score: 1376
Period size: 501 Copynumber: 2.2 Consensus size: 501
14799435 CTCAAAATCA
* ***
14799445 TAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAATAAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
** ** *
14799509 GAAACGAGCGTGCAAGCGCTCAGTC-AGTCGGAGAGGCAGAATGTGCAAGCCGGGGATTGGCCCG
66 GAAACGAGCGTGCGGGCGCTCAGTCGA-TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCG
* * * * ** *
14799573 GTGCCCCCCTGCGTGCTGTCGATCCTGCTACGTAACCCTTGGTCTGGTCTGATCTTAGATTGGGA
130 GTGCCCCCCTGCGTCCTGTCGATCCTGCTACGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGA
* * * * **
14799638 ATGAACTCTGTATGCATAAGTCAACCCAAGAAACGAGCGTGCAGGTGCAGAGCCGGTCGAAGACG
195 ATGAACTCCGTATGCATAAGTCAACCCAAGAAACAAGCGTACAGGCGCAGAGCCGACCGAAGACG
* * * * *
14799703 GCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCAGTCCCGCTACCACAA
260 GCATAATGAGCAAGTCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAA
* * * * *
14799768 CCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCCTACGCCTAAGCCAATCCACGAAATG
325 CCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATG
* * * * *
14799833 GGCGTACGGGCGCTCAGTTGGCTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
390 GGCGTACGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCC
* * * * *
14799898 CTGCGTGCGCCAATCTTGCTGCCGCAACCCTCAGTTCAG-TTTGATCT
455 CTACGTGCACCAATCCTGCTGCCGCAACCC-CAGATCAGATTCGATCT
*
14799945 TAGACTGGGAATGAACTGCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* ** * *
14800010 GAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGCACAAGTTGGGGATCGTCTCGG
66 GAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGG
*
14800075 T-CCCTCCCTGCGTCCTGTTGATCCTGCTACTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGG
131 TGCCC-CCCTGCGTCCTGTCGATCCTGCTAC-GCAACCCTCGGTCCGGTCCAATCTTAGACTGGG
* * *
14800139 AATGAACTCCGTATGCCTAAGTCAA-CCAACGAAACAAGCGTAC-GAGCGCTGAGCCGACCGGAG
194 AATGAACTCCGTATGCATAAGTCAACCCAA-GAAACAAGCGTACAG-GCGCAGAGCCGACCGAAG
* *
14800202 A-GGCATAATGAGCAAGTCAGGGATCGGCTCAGTCCCCCTCTGCGTGCTGCC-GATCCCGCTGCC
257 ACGGCATAATGAGCAAGTCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCAG-TCCCGCTACC
* *
14800265 ACAACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
321 ACAACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGA
* * * * * * ** *
14800330 AATGGGTGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGTAAGTC-AGGATTAGTTCGGTC
386 AATGGGCGTACGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATC
* * *
14800394 CCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCCTGATCCGATTCGATCT
451 CCCCCTACGTGC-ACCAATCCTGCTGCCGCAACCCCAGATCAGATTCGATCT
* * *
14800446 TAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGGATGAACTCCATATGCCTAAGTCAACCCA
1 TAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
14800510 CGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGGATGC
65 TGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGC
14800555 GTAAGCTGGG
Statistics
Matches: 521, Mismatches: 79, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
500 37 0.07
501 408 0.78
502 76 0.15
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (501 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGG
TGCCCCCCTGCGTCCTGTCGATCCTGCTACGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA
TGAACTCCGTATGCATAAGTCAACCCAAGAAACAAGCGTACAGGCGCAGAGCCGACCGAAGACGG
CATAATGAGCAAGTCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAAC
CCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATGG
GCGTACGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCC
TACGTGCACCAATCCTGCTGCCGCAACCCCAGATCAGATTCGATCT
Found at i:14800473 original size:26 final size:26
Alignment explanation
Indices: 14800444--14800496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14800434 CCGATTCGAT
* *
14800444 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
*
14800470 CTTAGAATGGGGATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
14800496 C
1 C
14800497 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:14801194 original size:26 final size:26
Alignment explanation
Indices: 14801156--14801208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14801146 GGCTCAAAAT
14801156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14801182 CTTAGACAT-GGAATGAAGTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14801208 C
1 C
14801209 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14801676 original size:26 final size:26
Alignment explanation
Indices: 14801647--14801699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14801637 CCGGTCCAAT
*
14801647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14801673 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14801699 C
1 C
14801700 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14802492 original size:158 final size:157
Alignment explanation
Indices: 14802040--14802503 Score: 384
Period size: 158 Copynumber: 2.9 Consensus size: 157
14802030 AACTCTGTAT
* * * * * * *
14802040 GCTTACACATGCAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTTAG
* * * * * * * * * * *
14802105 TCGACTGGAGAGGCAGAATGCGCAAGTTGGGGACCGGCCCGGTCCCCCATTGCATGTTATCTATC
66 CCGACTGGAGAGGCAGAATGCGCAAGCTGAGGATC-GACCAGTCCCCC-CTGCGTGCTACCAATC
* * * *
14802170 CTGCTACCTTAACCCTCAGTCCGGTCCGA
129 CTGCTGCCATAACCCTCGGTCCGGTCAGA
* * * *
14802199 TCTTAGAC-TGGAAATGAACTTCGTATGCCTAA-CTCAACCCACAAAACGGGTGTGGGGGCG-TT
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGC-CAACCCACAAAACGGGCGTGCGGGCGCTT
* * * * * * *
14802261 GAACCGACCGGAGAGGCA-AACGCGCAAGC-CAGGGATCGACCCGATCCCCTTCTGTGTGCTACC
64 -AGCCGACTGGAGAGGCAGAATGCGCAAGCTGA-GGATCGACCAG-TCCCC-CCTGCGTGCTACC
** * * * *
14802324 GGTCCCGCTGCCACAACCCTCGGTTCGG-CTAGG
125 AATCCTGCTGCCATAACCCTCGGTCCGGTC-AGA
* * *
14802357 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTTAG
*
14802422 CC-AGCTGGAGAGGTAGAATGCGCAAGCTGAGGATCGACCTAGTCCCCCCTGCGTGCTACCAATC
66 CCGA-CTGGAGAGGCAGAATGCGCAAGCTGAGGATCGACC-AGTCCCCCCTGCGTGCTACCAATC
*
14802486 CTGCTGCCGTAACCCTCG
129 CTGCTGCCATAACCCTCG
14802504 ATCTGATCCG
Statistics
Matches: 235, Mismatches: 56, Indels: 29
0.73 0.17 0.09
Matches are distributed among these distances:
157 6 0.03
158 138 0.59
159 89 0.38
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTTAG
CCGACTGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCAGTCCCCCCTGCGTGCTACCAATCCT
GCTGCCATAACCCTCGGTCCGGTCAGA
Found at i:14803046 original size:499 final size:500
Alignment explanation
Indices: 14801995--14803130 Score: 1353
Period size: 499 Copynumber: 2.3 Consensus size: 500
14801985 CTATTGCCAC
* * **
14801995 AACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTACACAT-GCAATGAAC
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-ATGGGGATGAAC
* * * * **
14802059 TCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAGTCGACTGGAGAGGC-AGAA
65 TCCGTATGCCTAAGTCAACCAAT-AAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAAG-A
* * * * **
14802123 TGCGCAAGTTGGGGACCGGCCCGGTCCCCCATTGCATGTTATCTATCCTGCTACCTTAACCCTCA
128 TGCGCAAGCTGGGGACCGGCCCGGTCCCCCATTGCATGCTATCGATCCTGCCACCGCAACCCTCA
* * *
14802188 GTCCGGTCCGATCTTAGACTGGAAATGAACTTCGTATGCCTAACTCAACCCACAAAACGGGTGTG
193 GTCCAGTCCGATCTTAGACTGGAAATGAACTTCGTATGCATAACTCAACCCACAAAACGAGTGTG
*** ** * * * **
14802253 GGGGCGTTGAACCGACCGGAGAGGCAAACGCGCAAGCCAGGGATCGACCCGATCCCCTTCTGTGT
258 CAAGCACTGAACCGACCGAAGAGGCAAACGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCAT
* * * * *
14802318 GCTACCGGTCCCGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
323 GCTACCAGCCCCGCTACCACAACCCTCGGTTCGGCTAGGGCGTAGACATCGAATGAACTCCCTAT
* * * * ** * *
14802383 GCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTTAGCCAGCTGGAGAGGTAGAATGCGCAAG
388 GCCTAAGCCAACCCACGAAACAGGCGTGCGAGCGCTCAGCCAGCCAGAGAGGCAAAATGCGCAAG
* * * *
14802448 CTGAGGATCGACCTAGTCCCCCCTGCGTGCTACCAATCCTGCTGCCGT
453 CAGAGGATCGACCTAGACCCCCCTGCGTGCTACCAATCCAGCTGCCGG
* * * *
14802496 AACCCTCGATCTGATCCGATTTTAGACTGGGAATGAACTCCT-TACGCTTAGAATGGGGATGAAC
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CTGTATGCTTAGAATGGGGATGAAC
*
14802560 TCCGTTTGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAAGAT
65 TCCGTATGCCTAAGTCAACCAAT-AAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAAGAT
* ** * *
14802625 GCGTAAGCTGGGGATTGGCCCGGTCCCCC-TTGCGTGCTGTCGATCCTGCCACCGCAA-CCTCAG
129 GCGCAAGCTGGGGACCGGCCCGGTCCCCCATTGCATGCTATCGATCCTGCCACCGCAACCCTCAG
* * *
14802688 TCCAGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCATAAGTCAACCCACGAAACGAGTGTG
194 TCCAGTCCGATCTTAGACTGGAAATGAACTTC-GTATGCATAACTCAACCCACAAAACGAGTGTG
** *
14802752 CAAGCACTGAGTCGATCGAAGAGGCATAATC-CACAAGCC-GAGGATCGACCCGATCCCCCTCTG
258 CAAGCACTGAACCGACCGAAGAGGCA-AA-CGCACAAGCCAG-GGATCGACCCGATCCCCCTCTG
* *
14802815 CATGCTACCAGCCCCGCTACCACAACCCTCGG-TCTGGCTTGGGCGTAGACATCGATTGAACTCC
320 CATGCTACCAGCCCCGCTACCACAACCCTCGGTTC-GGCTAGGGCGTAGACATCGAATGAACTCC
* * *
14802879 CTATGCCTAAGCCAACCCATGAAACAGGCGTGCGATCGCTCAGCCGGCCAGAGAGGCAAAATGCG
384 CTATGCCTAAGCCAACCCACGAAACAGGCGTGCGAGCGCTCAGCCAGCCAGAGAGGCAAAATGCG
* * * * * *
14802944 CAAGCCAGA-GATCGGCC-CGACCCCCTTGCGTGTTGCCAATCCAGCTGCTGG
449 CAAG-CAGAGGATCGACCTAGACCCCCCTGCGTGCTACCAATCCAGCTGCCGG
* *
14802995 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAATT
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAA-C
* * *
14803060 TCC-TATGCCTCAGTCAACTCACA-AAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGGA
65 TCCGTATGCCTAAGTCAAC-CA-ATAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAAGA
14803123 TGCGCAAG
128 TGCGCAAG
14803131 TCGGGGATGA
Statistics
Matches: 537, Mismatches: 85, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
498 4 0.01
499 220 0.41
500 175 0.33
501 134 0.25
502 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (500 bp):
AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAACT
CCGTATGCCTAAGTCAACCAATAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAAGATGC
GCAAGCTGGGGACCGGCCCGGTCCCCCATTGCATGCTATCGATCCTGCCACCGCAACCCTCAGTC
CAGTCCGATCTTAGACTGGAAATGAACTTCGTATGCATAACTCAACCCACAAAACGAGTGTGCAA
GCACTGAACCGACCGAAGAGGCAAACGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCATGCT
ACCAGCCCCGCTACCACAACCCTCGGTTCGGCTAGGGCGTAGACATCGAATGAACTCCCTATGCC
TAAGCCAACCCACGAAACAGGCGTGCGAGCGCTCAGCCAGCCAGAGAGGCAAAATGCGCAAGCAG
AGGATCGACCTAGACCCCCCTGCGTGCTACCAATCCAGCTGCCGG
Found at i:14803764 original size:26 final size:25
Alignment explanation
Indices: 14803725--14803776 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14803715 GGCTCAAAAT
14803725 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
14803750 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
14803776 C
1 C
14803777 CTAAGCTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:14803948 original size:26 final size:26
Alignment explanation
Indices: 14803907--14803962 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14803897 CCGATCTGAT
**
14803907 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14803933 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14803959 CTTA
1 CTTA
14803963 AGTTAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14804290 original size:170 final size:170
Alignment explanation
Indices: 14804105--14804560 Score: 515
Period size: 170 Copynumber: 2.7 Consensus size: 170
14804095 TTGGCTGGGG
* *
14804105 CTTAGACAT-GGAATGAAGTCTGTATGCCTTAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTTAGCCAACCCATGAAACAAGCATGCGGGTGCTCAG
** * *
14804169 TTAGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCC-AGTCCCCCCTACATGCTGCCAATC
65 CCAGCCAGAGAGGCAGAATCCGCAAGCCGGGGATCAACCCGA-TCCCCCCTACATGCTGCCAATC
* * * *
14804233 CTGCTGCTGGTCTTGCAAAT-GCAACCTTCAGTCCGATCTGAT
129 CTGCTGCCGGTCCTGC-AATCACAACCTTCAGTCCGATCCGAT
* * *
14804275 CTTAGACTGGGAATGAACTCTATATGCCTTAGCCAGCCCATGAAACAAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTTAGCCAACCCATGAAACAAGCATGCGGGTGCTCAGC
* * * ** * * * * ** *
14804340 CGGCCAGAGAGGCATAATCCGCAAGTCGGGGATTGACCCGATCTCCCTTGCGTGCTGCTGATCTT
66 CAGCCAGAGAGGCAGAATCCGCAAGCCGGGGATCAACCCGATCCCCCCTACATGCTGCCAATCCT
* *
14804405 GCTGCCGGTCCTGCTATCACAACCTTCAGTTCGATCCGAT
131 GCTGCCGGTCCTGCAATCACAACCTTCAGTCCGATCCGAT
* * * * *
14804445 CTTAGACTGGGAATGAACTCCGCATGCCTCAGCCAACCCATGAAACGAGCATGCGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTTAGCCAACCCATGAAACAAGCATGCGGGTGCTCAGC
* * * * *
14804510 C-GACCGGAGAGGCAGAATACGCAAGTCGGGGATCGACCTGATCCCCCCTAC
66 CAG-CCAGAGAGGCAGAATCCGCAAGCCGGGGATCAACCCGATCCCCCCTAC
14804561 GTGTTGTCGA
Statistics
Matches: 239, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
169 4 0.02
170 234 0.98
171 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTTAGCCAACCCATGAAACAAGCATGCGGGTGCTCAGC
CAGCCAGAGAGGCAGAATCCGCAAGCCGGGGATCAACCCGATCCCCCCTACATGCTGCCAATCCT
GCTGCCGGTCCTGCAATCACAACCTTCAGTCCGATCCGAT
Found at i:14805223 original size:500 final size:493
Alignment explanation
Indices: 14804445--14806025 Score: 1761
Period size: 500 Copynumber: 3.2 Consensus size: 493
14804435 TCGATCCGAT
* * * * * * *
14804445 CTTAGACTGGGAATGAACTCCGCATGCCTCAGCCAACCCATGAAACGAGCATGCGGGTGCTTAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14804510 CGACCGGAGAGGCAGAATACGCAAGTCGGGGATC-GACCTGATCCCCCCTACGTGTTGTCGATCC
65 CGACCGGAGAGGCAGAATGCGCAAGCCCGGGAACAG-CCCGGTCCCCCCTGCGTG-TGTCGATCC
**
14804574 TACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
128 TACT---GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* * * * * **
14804639 CCCACGAAACGAGCATGCGGGCGTTGAGCCACCTGGAA-TGGCATAATGCGCAAGCCGAACATCG
190 CCCATGAAATGAGCATGCGGGCGTTGAGCGA--TCGAAGAGGCATAATGCGCAAGCCGAGGATCG
* * * * *
14804703 ACTCGATCCACCTTTGCGTGCTACCGATCCCGCTGCCACAACCCTAGGTCCGGTTGGGGCTTAGA
253 ACTCGGTCCACCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA
* * * *
14804768 CATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGTGGGTGCTCAGCCGGTCG
318 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGGTCG
* * * * *
14804833 GAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCTCATTCGTGCTGTCGATCCTGCGACT
383 GAGAGGCAGAATGCATAAGCCGGGGATCGGCCTGATCCCTC-TACGTGCTGTCGATCCTGCTACC
** * * *
14804898 GTAACCCTCGATCTAGTTTGATCTTAGACTAGGAATGAACTTCGTATG
447 ACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAAC-TCGTATG
* * * * * * * *
14804946 CTTAGACTGGGCTGAACTCTGTATGCCAAAGTCAACCCATGAAATGAACGTGCGAGCGCTCAGCG
1 CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * ** *
14805011 GATCGGAGAGGCAGTATGCGCAAGCCCGGGAATGGCCCGGTCACCTCCTGCGTGCTGTCGATCCT
66 GACCGGAGAGGCAGAATGCGCAAGCCCGGGAACAGCCCGGTC-CCCCCTGCGTG-TGTCGATCCT
* * *
14805076 ACTGTGCAACCCTCGGTCTGGTCTGGTCTTAGACTCGGAATGAACTTCGTATGCCTAAGTCAACC
129 AC--TGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
* * * * *
14805141 CATGAAATGAGCGTGCGGGCGCTGAGTCGATCGAAGAGGCATAATGTGCAAGTCGGGGATC-AGC
192 CATGAAATGAGCATGCGGGCGTTGAG-CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGA-C
* * ** *
14805205 CCGGTCC-CCGTCTGCGTGCTGCCGGTCTTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGAC
255 TCGGTCCACC-TCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC
** * * *
14805269 ATGGAATGAACAACCTATGCCTAAGCCAACCCACGAAATGGACGTGCAGGAGCTCAG-CGGTCGA
319 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGGTCGG
* * * *
14805333 AGAGGCAGAATGCGTAAGCCGTGGATCGG-CTCGGTCCCTTCTGCGTGCTGTCGATCCTGCTACC
384 AGAGGCAGAATGCATAAGCCGGGGATCGGCCT-GATCCC-TCTACGTGCTGTCGATCCTGCTACC
*
14805397 ACAATCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATG
447 ACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTC-GTATG
* * * * * *
14805445 CTTGGACATGGAATGAACTCCGTATGTCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
14805510 TC-ACCGGAGAGGTAGAATACGCAAGCCGGGGACCAGTTCGGTCCCCCCTGCATGT-T-G----T
65 -CGACCGGAGAGGCAGAATGCGCAAGCCCGGGAACAGCCCGGTCCCCCCTGCGTGTGTCGATCCT
*
14805568 -C-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
129 ACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
* * * * * *
14805631 TGAAATGAGCCTACAGGCGTTGAGCCGACCGAAGAGGCATAATGCGTAAACCGAGGATCGACTCG
194 TGAAATGAGCATGCGGGCGTTGAG-CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACTCG
* *
14805696 GTCCGCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGG
258 GTCCACCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGG
** ** * *
14805761 AATGAACTCCCTATGCCTAAGCCAACCCATAAAACAGGCGTACGGGCGCTCAGCCGGTCGGAGAG
323 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGGTCGGAGAG
* * * **
14805826 GTAGAATACATAAGCCGGGGATCGGCCTGATCCCCCCTACGTGCTACCGATCCTGCTACCACAAC
388 GCAGAATGCATAAGCCGGGGATCGGCCTGAT-CCCTCTACGTGCTGTCGATCCTGCTACCACAAC
* * *
14805891 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACCCCGTATG
452 CCTCGATCCAGTCTGATCTTAGACTGGGAATGAA-CTCGTATG
*
14805934 CTTAAACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14805999 CGACCAGAGAGGCAGGATGCGTAAGCC
65 CGACCGGAGAGGCAGAATGCGCAAGCC
14806026 GAGGATCAAA
Statistics
Matches: 901, Mismatches: 158, Indels: 54
0.81 0.14 0.05
Matches are distributed among these distances:
488 211 0.23
489 174 0.19
490 7 0.01
491 1 0.00
492 1 0.00
496 1 0.00
497 1 0.00
498 5 0.01
499 117 0.13
500 347 0.39
501 35 0.04
503 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (493 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCCGGGAACAGCCCGGTCCCCCCTGCGTGTGTCGATCCTAC
TGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATG
AAATGAGCATGCGGGCGTTGAGCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACTCGGTC
CACCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAT
GAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGGTCGGAGAGGCA
GAATGCATAAGCCGGGGATCGGCCTGATCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTC
GATCCAGTCTGATCTTAGACTGGGAATGAACTCGTATG
Found at i:14805445 original size:157 final size:154
Alignment explanation
Indices: 14804946--14805445 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 154
14804936 ACTTCGTATG
* * *
14804946 CTTAGACTGGG-CTGAACTCTGTATGCCAAAGTCAACCCATGAAATGAACGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGGACGTGCG-GCGCTCAGC
* * *
14805010 GGATCGGAGAGGCAGTATGCGCAAGCCCGGGAAT-GGCCCGGTCACCTCCTGCGTGCTGTCGATC
65 GG-TCGAAGAGGCAGAATGCGCAAG-CCGGG-ATCGGCCCGGTC-CCTTCTGCGTGCTGTCGATC
* *** **
14805074 CTACTGTGCAACCCTCGGTCTGGTCTGGT
126 CTGCTCCACAACCCTCGGTCCAGTCTGGT
* *
14805103 CTTAGACTCGGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAAT-GAGCGTGCGGGCGCTGA
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCATGAAATGGA-CGTGC-GGCGCTCA
* * * * * * * *
14805166 GTCGATCGAAGAGGCATAATGTGCAAGTCGGGGATCAGCCCGGTCCCCGTCTGCGTGCTGCCGGT
63 G-CGGTCGAAGAGGCAGAATGCGCAAG-CCGGGATCGGCCCGGT-CCCTTCTGCGTGCTGTCGAT
* *
14805231 CTTGCTGCCACAACCCTCGGTCCAG-CTGGGG
125 CCTGCT-CCACAACCCTCGGTCCAGTCT-GGT
* * * * *
14805262 CTTAGACAT-GGAATGAACAAC-CTATGCCTAAGCCAACCCACGAAATGGACGTGCAGGAGCTCA
1 CTTAGAC-TGGGAATGAAC-TCTGTATGCCTAAGTCAACCCATGAAATGGACGTGC-GGCGCTCA
* *
14805325 GCGGTCGAAGAGGCAGAATGCGTAAGCCGTGGATCGGCTCGGTCCCTTCTGCGTGCTGTCGATCC
63 GCGGTCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGGTCCCTTCTGCGTGCTGTCGATCC
* * *
14805390 TGCTACCACAATCCTCGATCCAGTCTGAT
127 TGCT-CCACAACCCTCGGTCCAGTCTGGT
14805419 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
14805446 TTGGACATGG
Statistics
Matches: 276, Mismatches: 50, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 76 0.28
158 126 0.46
159 69 0.25
160 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (154 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGGACGTGCGGCGCTCAGCG
GTCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCTTCTGCGTGCTGTCGATCCTGCT
CCACAACCCTCGGTCCAGTCTGGT
Found at i:14805925 original size:158 final size:159
Alignment explanation
Indices: 14805570--14805934 Score: 400
Period size: 159 Copynumber: 2.3 Consensus size: 159
14805560 CATGTTGTCG
* * *
14805570 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATAAA
* * * * * * *
14805635 ATGAGCCTACAGGCGTTGAGCCGACCGAAGAGGCATAATGCGTAAACCGAGGATCGACTCGGTCC
66 AAGAGCCTACAGGCGCTCAGCCGACCGAAGAGGCAGAATACATAAACCGAGGATCGACTCGATCC
* * ** *
14805700 GCCTCTGCGTGCTGTCGATCCCGCTGCCA
131 GCCCCTACGTGCTACCGATCCCGCTACCA
**
14805729 CAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATA
1 CAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATA
* * ** * * * * *
14805792 AAACAG-GCGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAATACATAAGCCGGGGATCGGC-CTG
64 AAA-AGAGCCTACAGGCGCTCAGCCGACCGAAGAGGCAGAATACATAAACCGAGGATCGACTC-G
*
14805855 ATCC-CCCCTACGTGCTACCGATCCTGCTACCA
127 ATCCGCCCCTACGTGCTACCGATCCCGCTACCA
14805887 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-CCCGTATGC
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCC-TATGC
14805935 TTAAACTAGG
Statistics
Matches: 170, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.02
158 62 0.36
159 102 0.60
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATAAA
AAGAGCCTACAGGCGCTCAGCCGACCGAAGAGGCAGAATACATAAACCGAGGATCGACTCGATCC
GCCCCTACGTGCTACCGATCCCGCTACCA
Found at i:14806912 original size:158 final size:158
Alignment explanation
Indices: 14806584--14807510 Score: 543
Period size: 158 Copynumber: 5.8 Consensus size: 158
14806574 ACTCCATATA
* * * ** *
14806584 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCACGAAATGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * **
14806649 C-GATCGGAGAGGCATAATGTGCAAGCCAGGAACC-AGCCCGATCCCTCCCTGCGTGTTGTTGAT
66 CAG-CCGAAGAGGCAGAATGTGCAAGCCAGGGACCGA-CCCGATCCC-CCCTGTGTGCTGTCAAT
* *
14806712 CCTGCTGCCGTAACCCTCAGTCTGGTCCGAT
128 CCTGCTGCCGTAACCCTCGGTCTGGTCCAAT
* * *
14806743 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CGAACCCATGAAACGGGCATGTGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * *
14806807 CCGGCCGAAGAGGTAGAATG-GACAAG-CTGAGGATCGGCCTGGTCCCCCCTGTGTGCTG-CTAA
65 CCAGCCGAAGAGGCAGAATGTG-CAAGCCAG-GGACCGACCCGATCCCCCCTGTGTGCTGTC-AA
** *
14806869 TCCTGCTGCCACAACCCTTGGTCTGGTCCAAT
127 TCCTGCTGCCGTAACCCTCGGTCTGGTCCAAT
* * * * * *
14806901 CTTAGACTGGGAATGAACTCCGTGTACCTAAGTCAACCCACGAGATGAGCTTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * *
14806966 CAGCCGAAGAGGCATAATGTGCAAGCCAGGGACCGACCCGATCCCCCTTGTGTGCTGTCGATCCT
66 CAGCCGAAGAGGCAGAATGTGCAAGCCAGGGACCGACCCGATCCCCCCTGTGTGCTGTCAATCCT
** * * *
14807031 GCCACCGTAACCCTCGATCCGGACCAAT
131 GCTGCCGTAACCCTCGGTCTGGTCCAAT
* * ** * ** *
14807059 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAGTGTGCGAGTACTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * ** * * * ** * *
14807124 CGGTC-AGAGAGGCATAATGTGCAAG-CTGAGGA-TTAGCCTGGTCCCCTTCTGCATGCTATCGA
66 CAGCCGA-AGAGGCAGAATGTGCAAGCCAG-GGACCGA-CCCGATCCCC-CCTGTGTGCTGTCAA
* * ** *
14807186 TCCCGTTGCGGGTCCTGCT-ACCACAACCCTC-GGTCCGACT
127 T-CC--TGC-TG-CC-G-TAACC-C-TCGGTCTGGTCC-AAT
* * * * *
14807226 GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCATACGGGCTC
1 ----CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGC
* * * * * * * *
14807290 TCAGTCGGGC-AGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCTGCGTGCTGTC
61 TCAGCCAGCCGA-AGAGGCAGAATGTGCAAGCCAGGGACCGACCCGATCCCCCCTGTGTGCTGTC
* * * * * **
14807354 GATCCTACTACCGCAACCCTCGAT-TCGGTCTGAT
125 AATCCTGCTGCCGTAACCCTCGGTCT-GGTCCAAT
* * * * * * *
14807388 CTTAGACTAGGAATGAGCTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * * *
14807453 CGGTCAAAGAGGCATAATGTGCAAGCCGGGGATC-AGCTCAATCCCCCTCTGTGTGCTG
66 CAGCCGAAGAGGCAGAATGTGCAAGCCAGGGACCGA-CCCGATCCCCC-CTGTGTGCTG
14807511 ATGGTCTGGC
Statistics
Matches: 590, Mismatches: 140, Indels: 76
0.73 0.17 0.09
Matches are distributed among these distances:
157 5 0.01
158 339 0.57
159 107 0.18
160 3 0.01
162 6 0.01
163 5 0.01
164 6 0.01
165 6 0.01
166 6 0.01
167 7 0.01
169 2 0.00
170 13 0.02
171 83 0.14
172 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CAGCCGAAGAGGCAGAATGTGCAAGCCAGGGACCGACCCGATCCCCCCTGTGTGCTGTCAATCCT
GCTGCCGTAACCCTCGGTCTGGTCCAAT
Found at i:14808004 original size:26 final size:26
Alignment explanation
Indices: 14807966--14808018 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14807956 GGCTCAAAAT
14807966 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14807992 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14808018 C
1 C
14808019 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14808179 original size:26 final size:26
Alignment explanation
Indices: 14808150--14808202 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14808140 CCGGTCCGAT
14808150 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14808176 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14808202 C
1 C
14808203 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14808387 original size:58 final size:58
Alignment explanation
Indices: 14808279--14808389 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 58
14808269 GGATCGGCCT
* * *
14808279 GGTCCCCTCTGCGTGCTGTCGATCCTACTGCTGGTCCTGCTACCATAACCCTCAGCCC
1 GGTCCCCCCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTACCACAACCCTCAGCCC
* * * * *
14808337 GGTCCCCCCTACGTGCTTTTGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTC
1 GGTCCCCCCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTACCACAACCCTC
14808390 TGTCTGATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 45 1.00
ACGTcount: A:0.10, C:0.41, G:0.22, T:0.27
Consensus pattern (58 bp):
GGTCCCCCCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTACCACAACCCTCAGCCC
Found at i:14808436 original size:26 final size:26
Alignment explanation
Indices: 14808399--14808450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14808389 CTGTCTGATT
*
14808399 TTAGACTCGGAATGAACTTCGTATGC
1 TTAGACTCGGAATGAACTCCGTATGC
14808425 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TCGGAATGAACTCCGTATGC
14808451 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTCGGAATGAACTCCGTATGC
Found at i:14815348 original size:159 final size:159
Alignment explanation
Indices: 14815045--14815548 Score: 468
Period size: 159 Copynumber: 3.2 Consensus size: 159
14815035 AACTCCATAT
* * *
14815045 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
* * * * * *
14815110 CCGGCCGAAGAGGTAGAATGCACAAGTC-AGGGATCGGCCCGATCCCTCCATGCGTGCTATCGAT
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGAACCCTCCATGCGTGCTACCGAT
* ** ** *
14815174 CTTGCTGCCGTAACCCTCGGTTTG-GTCCGA
130 CCTGCTGCCACAACCCTCGGTCCGACT-CGA
* * * *
14815204 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCA
* *
14815268 GCCAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTAACCCT-C-TGCGTGCTACCG
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGC-CCG-AACCCTCCATGCGTGCTACCG
* * * *
14815331 GTCCTGTTGCCACAACCCTCGGTCCGACTGGG
128 ATCCTGCTGCCACAACCCTCGGTCCGACTCGA
* * * *
14815363 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCATGCGGGTGCTCA
* * * * * * * * **
14815427 GCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGACCCT-CATCCATGCTGTCGAT
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGAACCCTCCATGCGTGCTACCGAT
* ** * *
14815491 CCTACTGCGGCAACCATCGGTCC-AGTTCGA
130 CCTGCTGCCACAACCCTCGGTCCGA-CTCGA
*
14815521 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14815549 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 8 0.03
158 56 0.20
159 204 0.73
160 6 0.02
161 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGAACCCTCCATGCGTGCTACCGATC
CTGCTGCCACAACCCTCGGTCCGACTCGA
Found at i:14815563 original size:26 final size:26
Alignment explanation
Indices: 14815522--14815574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14815512 CCAGTTCGAT
14815522 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14815548 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14815574 C
1 C
14815575 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14815672 original size:184 final size:183
Alignment explanation
Indices: 14815374--14815921 Score: 542
Period size: 184 Copynumber: 3.0 Consensus size: 183
14815364 CTTAGACATT
* * * **
14815374 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGCCAACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCC-GAGA
* * *
14815439 GGCAGAATGCGCAAGCCGGGGATC-GACCTGGACCCTCATCC-A--TGCTGTCGATCCTACTGCG
65 GGCAGAATGCGCAAGCTGGGGATCGGACC-GGTCCC-C-CCCGACGTGCTGTCGATCCTACTGC-
* * *
14815500 GCAACCATCGGTCCAGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTT-AG-ACTGG
126 GCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGCA-T-A
* * * * * **
14815558 GGATGAACTTCGTATGCCTATGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGTTGGCCGAGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCGAGAG
* *
14815623 GCAGAATGCGCAAGCTAGGGATCGGATCGGTCCCCCCCGACGTGCTGTCGATCC-AGCTGCCGCA
66 GCAGAATGCGCAAGCTGGGGATCGGACCGGTCCCCCCCGACGTGCTGTCGATCCTA-CTG-CGCA
* * * *
14815687 ACCCTCGGTTCGGTTTGATCTTAGACT-GAGAATGAACGCCATATGCTTAAGCATA
129 ACCCTCGGTCCGGTTCGATCTTAGACTAG-GAATGAACTCCGTATGCTTAAGCATA
* * * * *
14815742 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGCCGGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG-CCGAGA
* * * * * * *
14815807 GGTAGAATGCACAAG-TCGGGGAT-GGCCCGATCCCCCCATG-CGTGCTATCGATCCTGCTGTCG
65 GGCAGAATGCGCAAGCT-GGGGATCGGACCGGTCCCCCC-CGACGTGCTGTCGATCCTACTG-CG
* * *
14815869 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAG
127 CAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAG
14815922 TCAACCCATG
Statistics
Matches: 297, Mismatches: 53, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
181 2 0.01
182 2 0.01
183 33 0.11
184 230 0.77
185 29 0.10
186 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCGAGAG
GCAGAATGCGCAAGCTGGGGATCGGACCGGTCCCCCCCGACGTGCTGTCGATCCTACTGCGCAAC
CCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGCATA
Found at i:14815744 original size:26 final size:26
Alignment explanation
Indices: 14815715--14815764 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14815705 TCTTAGACTG
*
14815715 AGAATGAACGCCATATGCTTAAGCAT
1 AGAATGAACGCCATATGCCTAAGCAT
* *
14815741 AGAATGAACTCCGTATGCCTAAGC
1 AGAATGAACGCCATATGCCTAAGC
14815765 CAACCCACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (26 bp):
AGAATGAACGCCATATGCCTAAGCAT
Found at i:14817125 original size:26 final size:26
Alignment explanation
Indices: 14817096--14817148 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14817086 CCAGTTTGAT
*
14817096 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14817122 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14817148 C
1 C
14817149 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14819085 original size:185 final size:182
Alignment explanation
Indices: 14818685--14819239 Score: 576
Period size: 184 Copynumber: 3.0 Consensus size: 182
14818675 TCCGACTGGG
* * * * * *
14818685 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCATGAAACGGGCGTGCAGGCACCCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCAAGAAACGAGAGTGCGGGCACTCAA
* *
14818750 TCGATCGGAGAGGCAGAATGCGCAAGCC-GAGGATC-AGCCCGGTCCCCCCTGCGTGCTATTGAT
65 TCGATCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGA-CCCGGTCCCCCCTGCGTGCTGTCGAT
* * * * * * *
14818813 CTTACTACCGTAAACCTTGATCTGATTAGATCTTAGATTGGGAATGAACTCCATAC
128 CCTACTACCG-CAACCTCGGTCTGATCAGATCTTAGACTGGGAATGAACTCCATAT
* * * *
14818869 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCAAGAAACGAGAGTGCGGGCACTCA
* * *
14818933 ATCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGAT
64 ATCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * *
14818998 CCTACTGCTGCAACTCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
128 CCTACTACCGCAAC-CTCGGTCTGATCAGATCTTAGACTGGGAATGAACTCCATAT
* * ** *
14819054 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGAGTGCGGGCGTTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCAAGAAACGAGAGTGCGGGCACTCAA
* * * * * * * ** * *
14819119 CCGGTCGAAGAGGTAGATTGCACAAGTCAGGGGCCGACCCGATCCCCCCTGCGTGTTGTCGATCC
65 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
14819184 TACTACCACAACCTTGGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 TACTACCGCAACC-TCGGTCTGATCAGATCTTAGACTGGGAATGAACTCCATAT
14819238 GC
1 GC
14819240 CTAAATCAAC
Statistics
Matches: 307, Mismatches: 56, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
183 2 0.01
184 159 0.52
185 145 0.47
186 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCAAGAAACGAGAGTGCGGGCACTCAAT
CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTACCGCAACCTCGGTCTGATCAGATCTTAGACTGGGAATGAACTCCATAT
Found at i:14820062 original size:158 final size:159
Alignment explanation
Indices: 14819765--14820194 Score: 372
Period size: 158 Copynumber: 2.7 Consensus size: 159
14819755 AACTCCATAT
* * * * * **
14819765 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAAGCGCTCAG
* * * * * * * ** *
14819830 TC-GATCGAAAAGGCAGAATGTGCAAGCCGAGG-ATC-GACCCGGTCCCCC-CTGGGTGCTGTCA
66 CCAG-TTGGAGAGGCAGAATGCGTAAGCC-AGGAATCAG-CCCGATCCCCCTCTACGTGCTGCCA
* ** * * *
14819891 ATCCTACTGCCACAACCCTC-AGTCCAG-TTTGA
128 GTCCCGCTACCACAACCCTCGA-T-CAGACTGGA
* * * * * * *
14819923 TCTTAGAC-TAGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACAAGCGTACAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAAGCGCTCA
* * * *
14819987 GCTAGTTGGAGAGGCATAATGCGTAAGTC-GGAATCAGCCCGGTCCCCCTCTACGTGCTGCCAGT
65 GCCAGTTGGAGAGGCAGAATGCGTAAGCCAGGAATCAGCCCGATCCCCCTCTACGTGCTGCCAGT
* *
14820051 CCCGCTACCACAACCCTCGATCTGACTGGG
130 CCCGCTACCACAACCCTCGATCAGACTGGA
** *
14820081 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAAGCGCTCAG
* * *
14820146 CCAGTTGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCT
66 CCAGTTGGAGAGGCAGAATGCGTAAGCCAGGAATCAGCCCGATCCCCCT
14820195 GCATGTTGCC
Statistics
Matches: 214, Mismatches: 49, Indels: 17
0.76 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 17 0.08
158 175 0.82
159 20 0.09
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAAGCGCTCAG
CCAGTTGGAGAGGCAGAATGCGTAAGCCAGGAATCAGCCCGATCCCCCTCTACGTGCTGCCAGTC
CCGCTACCACAACCCTCGATCAGACTGGA
Found at i:14820225 original size:711 final size:699
Alignment explanation
Indices: 14819035--14820366 Score: 1677
Period size: 711 Copynumber: 1.9 Consensus size: 699
14819025 CGATCTTAGA
*
14819035 CTGGGAATGAACTCCATATGCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCAAGAAA
1 CTGGGAATGAACTCCATATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCAAGAAA
* * * * * * * * * *
14819100 CGAGAGTGCGGGCGTTTAACCGGTCGAAGAGGTAGATTGCACAAGTCAGGGGCCGACCCGATCCC
66 CAAGAGTGCGAGCATTCAACCGATCGAAAAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCC
* * * ** ** *
14819165 CCCTGCGTGTTGTCGATCCTACTACCACAACCTTGGGTCTGGTCTGATCTTAGACTGGGAATGAA
131 CCCTGCGTGCTGTCAATCCTACTACCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAA
* * * *
14819230 CTCCGTATGCCTAAATCAACCCACGAAACGAGCATTCAGGGGCTGAGCTGGCCGAAGAGGCATAA
196 CTCCGTATGCCTAAATCAACCCACGAAACAAGCATACAGGCGCTGAGCTAGCCGAAGAGGCATAA
* * * * *
14819295 TATGCAAGCTGAGGATCGGCCCGGTCCCCATCTACGTGCTGTCGGTCCCGCTACCACAACCCTCG
261 TACGCAAGCTGAGAATCAGCCCGGTCCCCATCTACGTGCTGCCAGTCCCGCTACCACAACCCTCG
* * * * *
14819360 GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTTTGCCTAAGCCAACCCATGAAATGGGCTTA
326 ATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTA
** * * *
14819425 TGAGAACTCAATCGATCGGAGAGGCAGAATGAACAAGCTAGGGATCGGCCCGATCCCCTGCGTGC
391 CAAGAACTCAACCGATCGGAGAGGCAGAATGAACAAGCCAGGGATCGGCCCGATCCCCTGCATGC
* *
14819490 TGTCGATCCAACTGTCGAAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
456 TGCCGATCCAACTGTCGAAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAA----G-A--C
* * **
14819555 TTAGAATAGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTC
514 -T-G---A-GGATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACAGGTGCTCAACC
* ***
14819620 GGTTGGAGAGGCCGATTGGAGAGGCATAATGCACAAGCC-GAGATCAGCTTGGTCCCCCTCTACG
573 GATTGGAGAGGCCGATCAAAGAGGCATAATGCACAAGCCGGAGATCAGCTTGGTCCCCCTCTACG
14819684 TGCTGCCAATCCTGCTACCGATCTTGCTACCACAACACTCGGTTCGGCTGGGGCTCCATATG
638 TGCTGCCAATCCTGCTACCGATCTTGCTACCACAACACTCGGTTCGGCTGGGGCTCCATATG
14819746 CTGGGAATGAACTCCATATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACA-AA
1 CTGGGAATGAACTCCATATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCA-AGAA
* ** ** * *
14819810 ACAAGCGTGCGAGCATTCAGTCGATCGAAAAGGCAGAATGTGCAAGCC-GAGGATCGACCCGGTC
65 ACAAGAGTGCGAGCATTCAACCGATCGAAAAGGCAGAATGCACAAGCCAG-GGACCGACCCGATC
* * *
14819874 CCCCCTGGGTGCTGTCAATCCTACTGCCACAACCCTCAGTCCAGTTTGATCTTAGACTAGGAATG
129 CCCCCTGCGTGCTGTCAATCCTACTACCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATG
* * * * ** *
14819939 AACTTCGTATGCTTAAGTCAACCCACGAAACAAGCGTACAGGCGCTGAGCTAGTTGGAGAGGCAT
194 AACTCCGTATGCCTAAATCAACCCACGAAACAAGCATACAGGCGCTGAGCTAGCCGAAGAGGCAT
* * *
14820004 AATGCGTAAG-TCG-GAATCAGCCCGGTCCCCCTCTACGTGCTGCCAGTCCCGCTACCACAACCC
259 AATACGCAAGCT-GAGAATCAGCCCGGTCCCCATCTACGTGCTGCCAGTCCCGCTACCACAACCC
*
14820067 TCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
323 TCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
* ** * * * ***
14820132 GTGCAAGCGCTCAGCC-AGTTGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTG
388 GTACAAGAACTCAACCGA-TCGGAGAGGCAGAATGAACAAGCCAGGGATCGGCCCGAT-CCCCTG
* ** *
14820196 CATGTTGCCGATCCTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAAGACTG
451 CATGCTGCCGATCCAACTGTCGAAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAAGACTG
* *
14820261 AGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGATTGGAG
516 AGGATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACAGGTGCTCAACCGATTGGAG
* * *
14820326 AGGCCGGTCAAAGAGGCATAATGCGCAAGCCGGGGATCAGC
581 AGGCCGATCAAAGAGGCATAATGCACAAGCCGGAGATCAGC
14820367 CCGATCCTTC
Statistics
Matches: 528, Mismatches: 87, Indels: 24
0.83 0.14 0.04
Matches are distributed among these distances:
698 83 0.16
699 9 0.02
702 1 0.00
703 1 0.00
704 1 0.00
706 1 0.00
707 1 0.00
709 1 0.00
710 148 0.28
711 281 0.53
712 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (699 bp):
CTGGGAATGAACTCCATATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCAAGAAA
CAAGAGTGCGAGCATTCAACCGATCGAAAAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCC
CCCTGCGTGCTGTCAATCCTACTACCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAA
CTCCGTATGCCTAAATCAACCCACGAAACAAGCATACAGGCGCTGAGCTAGCCGAAGAGGCATAA
TACGCAAGCTGAGAATCAGCCCGGTCCCCATCTACGTGCTGCCAGTCCCGCTACCACAACCCTCG
ATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTA
CAAGAACTCAACCGATCGGAGAGGCAGAATGAACAAGCCAGGGATCGGCCCGATCCCCTGCATGC
TGCCGATCCAACTGTCGAAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAAGACTGAGGAT
GAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACAGGTGCTCAACCGATTGGAGAGGCC
GATCAAAGAGGCATAATGCACAAGCCGGAGATCAGCTTGGTCCCCCTCTACGTGCTGCCAATCCT
GCTACCGATCTTGCTACCACAACACTCGGTTCGGCTGGGGCTCCATATG
Found at i:14820931 original size:159 final size:158
Alignment explanation
Indices: 14820768--14821132 Score: 351
Period size: 159 Copynumber: 2.3 Consensus size: 158
14820758 CTTGCTACCG
* * *
14820768 CAACCCTCGGTCCGATCCGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAA
1 CAACCCTCGGTCCGATCCGATCTTAGAATGGGAATGAACTCCATATGCCTAAGCTAACCCACGAA
** * * * *
14820833 ACAAGTGTGCGGGTGCT-GAGCCGACCGGAGAGGCATAATGCGTAAGTC-GAGGATCGGCCTAGT
66 ACAAGCATGCGGGTGCTCG-GCCGACCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCTAGT
* *
14820896 CCCCCTTTACGTGCTGCCGATCCCACTGCCA
129 CCCCC-CTACGTACTGCCGATCCCACTGCCA
* * * ** * * *
14820927 CAACCCTTGGTCCG-GCTGGGGCTTAGACAT-GGAATGACCTCCCTATGCCTAAGCTAACCCATG
1 CAACCCTCGGTCCGATC-CGATCTTAGA-ATGGGAATGAACTCCATATGCCTAAGCTAACCCACG
* * * ** *
14820990 AAATAGGCATGCGGGTGCTCGGTCGGTCAGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCTAGT
64 AAACAAGCATGCGGGTGCTCGGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTAGT
* ** * *
14821055 CCCCCCTACGTACTGTCGATCCTGCTGTCG
129 CCCCCCTACGTACTGCCGATCCCACTGCCA
* * * *
14821085 CAACCCTCGATCCGATTCGATCTTAGACTGGGAATAAACTCCATATGC
1 CAACCCTCGGTCCGATCCGATCTTAGAATGGGAATGAACTCCATATGC
14821133 TTAGACTAGG
Statistics
Matches: 160, Mismatches: 40, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.01
158 53 0.33
159 103 0.64
160 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CAACCCTCGGTCCGATCCGATCTTAGAATGGGAATGAACTCCATATGCCTAAGCTAACCCACGAA
ACAAGCATGCGGGTGCTCGGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTAGTCC
CCCCTACGTACTGCCGATCCCACTGCCA
Found at i:14821150 original size:26 final size:26
Alignment explanation
Indices: 14821106--14821158 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14821096 CCGATTCGAT
14821106 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
14821132 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATAAACTCCATATG
14821158 C
1 C
14821159 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:14821881 original size:26 final size:26
Alignment explanation
Indices: 14821830--14821882 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14821820 GGCTCCAACT
*
14821830 CTTAGACTGGGAATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
14821856 CTTAGACAT-GGAATCAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
14821882 C
1 C
14821883 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:14822687 original size:26 final size:26
Alignment explanation
Indices: 14822649--14822701 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14822639 GGCTCAAACT
**
14822649 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACAAGGAATGAACTCT-GTATG
14822675 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCTGTATG
14822701 C
1 C
14822702 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCTGTATG
Found at i:14823313 original size:26 final size:26
Alignment explanation
Indices: 14823284--14823333 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14823274 ATTAGATCTT
14823284 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
* *
14823310 AGACTGGGGATGAACTCTGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14823334 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:14823528 original size:26 final size:26
Alignment explanation
Indices: 14823477--14823529 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14823467 CCGATCCCAT
**
14823477 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14823503 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14823529 C
1 C
14823530 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14823629 original size:196 final size:196
Alignment explanation
Indices: 14823261--14823636 Score: 470
Period size: 196 Copynumber: 1.9 Consensus size: 196
14823251 TTGCTGCTGT
* * * *
14823261 AACCCTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACT
1 AACCCTCGATCCGATCACATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACT
** * * * * * * *
14823326 CTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCACAGCCAGTCGGAGAGGTAGAATG
66 CCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACACAACCAGCCGAAGAGGTAAAATG
* * *
14823391 CACAAGCCGAGGATCGACCCAGTGCCCCTTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATTG
131 CACAAGCCGAGGATCGACCCAGTCCCCCCTACATGCTGTCGATCCTGCTGCTGGTCCTACTATTG
14823456 C
196 C
* * *
14823457 AACCCTCGATCCGATCCCATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAAC
1 AACCCTCGATCCGATCACATCTTAGACTGGGAATGAACTCCGTATGCTCAGAC-TGGGAATGAAC
* **
14823521 TCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCATTCAACC-GACCGAAGAGGTAAAA
65 TCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACACAACCAG-CCGAAGAGGTAAAA
* * * *
14823585 TGCGCAAGCCGTGGATCGACCC-GATCCCCCCTGCATGTTGTCGATCCTGCTG
129 TGCACAAGCCGAGGATCGACCCAG-TCCCCCCTACATGCTGTCGATCCTGCTG
14823637 TCACAACCCT
Statistics
Matches: 151, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
195 2 0.01
196 148 0.98
197 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (196 bp):
AACCCTCGATCCGATCACATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACT
CCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACACAACCAGCCGAAGAGGTAAAATG
CACAAGCCGAGGATCGACCCAGTCCCCCCTACATGCTGTCGATCCTGCTGCTGGTCCTACTATTG
C
Found at i:14824027 original size:26 final size:26
Alignment explanation
Indices: 14823977--14824029 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14823967 CCAGTCCAAT
**
14823977 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
* *
14824003 CTTAGATTGGGGATGAAGTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
14824029 C
1 C
14824030 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.11, G:0.30, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:14824584 original size:159 final size:158
Alignment explanation
Indices: 14824166--14824633 Score: 430
Period size: 159 Copynumber: 3.0 Consensus size: 158
14824156 CTCGGTCCAG
* * * *
14824166 CTGGGGCTTAGACTTAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCT
1 CTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCG
* * ** * * * *
14824231 CTTAACTGAATGGAGAGATAGAATGAGCAAG-TCAGGGA-CCGACCGATCCCCCCTACGTGCTGT
65 CTCAACCGAATGGAGAGGCAGAATGAGCAAGCT-GGGGATCGGCCCGATCCCCCCTACGTGCTGC
* *
14824294 TGATCCTGCTGCCACAACCCTCGGTCTGAT
129 AGATCCTGCTACCACAACCCTCGGTCTGAT
** * * *
14824324 CT-GATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGAGTGGGCG
1 CTGGGGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCG
* * * * * * * *
14824388 CTGAACCG-GTCGGAGATGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGTTG
65 CTCAACCGAAT-GGAGAGGCAGAATGAGCAAGCTGGGGATCGGCCCGATCCCCC-CTACGTGCTG
* * *
14824452 CCAG-TCCTGCTACCATAACCTTCGGTCTGGT
128 -CAGATCCTGCTACCACAACCCTCGGTCTGAT
* * * *
14824483 -TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTAGGCG
1 CTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCG
* * * * * *
14824547 CTCAACCGACTAGAGAGGCAGAATGTGCAAGCTGGGGATCGG-CCTAGTCCCCCCTGCGTGCTAT
65 CTCAACCGAATGGAGAGGCAGAATGAGCAAGCTGGGGATCGGCCCGA-TCCCCCCTACGTGCT-G
*
14824611 CA-ATCCTGCTGCCACAACCCTCG
128 CAGATCCTGCTACCACAACCCTCG
14824634 ATCCGATCCA
Statistics
Matches: 245, Mismatches: 53, Indels: 24
0.76 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 75 0.31
158 44 0.18
159 121 0.49
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTGGGGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGC
TCAACCGAATGGAGAGGCAGAATGAGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGCAG
ATCCTGCTACCACAACCCTCGGTCTGAT
Found at i:14825574 original size:159 final size:157
Alignment explanation
Indices: 14825404--14825762 Score: 378
Period size: 159 Copynumber: 2.3 Consensus size: 157
14825394 CTACTATCGT
* *
14825404 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCATGAAA
1 AACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCC-TATCCCTAAGCCAACCCATGAAA
* * * *
14825469 CGAGCGTGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCCCAAGTTGGGGATCAACCCAGTCCC
65 CGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCCCAAGCTGGGGATCAACCCAGTCCC
* * *
14825534 CCTTTGCGTGCTACCGGTCTTACTGCCAC
130 CC-CTGCGTGCTACCGATCCTACTGCCAC
** * ** * *
14825563 AACCCTCAGTCC-AACTAGGGCTTAGACAAGGAATGAACTACCTATGCCTAAGCCAACCCATGAA
1 AACCCTCAGTCCGGTC-CGATCTTAGACTAGGAATGAACT-CCTATCCCTAAGCCAACCCATGAA
* * * * * * ** **
14825627 ATGGGTGTGCGGGCGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCC
64 ACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCCCAAGCTGGGGATCAACCCAGTCC
** * * *
14825692 CCCCTGCGTGCTGTCGATCCTGCTGTCGC
129 CCCCTGCGTGCTACCGATCCTACTGCCAC
* *
14825721 AGCCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAGCTCCT
1 AACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCT
14825763 TATGCTTAGA
Statistics
Matches: 158, Mismatches: 39, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.02
158 48 0.30
159 105 0.66
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
AACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCTATCCCTAAGCCAACCCATGAAAC
GAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCCCAAGCTGGGGATCAACCCAGTCCCC
CCTGCGTGCTACCGATCCTACTGCCAC
Found at i:14826065 original size:171 final size:171
Alignment explanation
Indices: 14825766--14826134 Score: 404
Period size: 171 Copynumber: 2.2 Consensus size: 171
14825756 AGCTCCTTAT
* * * *
14825766 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCA
* * * * * * *
14825830 ACCGGTCGGATAGGCATAATGCGTAAGTCAAAGATCAGCCCGATCCCCCTCTTCGTGCTGTCGAT
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCCAAAGATCAGCCCGATCCCCCTCTGCGCGCTGTCGAT
* * *
14825895 -CTCGCTGCCAGTCCCGCTATCACAACCCTTGATCCGG-CTGA
130 CCT-GCTGCCAGTCCCACTACCACAACCCTCGATCCGGTCTGA
*
14825936 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGTG-GCTC
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-AGGGCGCTC
** ** * * * *
14826000 AGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCTCTCTGCGCGTTGTCGA
64 AACCGGCCGGAGAGGCAGAATGCGCAAGCCAAAGATCAGCCCGATCCCCCTCTGCGCGCTGTCGA
** * * *
14826065 TCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGGTCTGA
129 TCCTGCTGCCAGTCCCACTACCACAACCCTCGATCCGGTCTGA
* *
14826108 TCTTAGACATGGAATGAACTCCTTATG
1 GCTTAGACATGGAATGAACTCCGTATG
14826135 TTTAGACATG
Statistics
Matches: 164, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
171 155 0.95
172 9 0.05
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCAAAGATCAGCCCGATCCCCCTCTGCGCGCTGTCGATC
CTGCTGCCAGTCCCACTACCACAACCCTCGATCCGGTCTGA
Found at i:14826160 original size:26 final size:26
Alignment explanation
Indices: 14826110--14826160 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14826100 CGGTCTGATC
*
14826110 TTAGACATGGAATGAACTCCTTATGT
1 TTAGACATGGAATGAACTCCGTATGT
*
14826136 TTAGACATGGAATGAACTTCGTATG
1 TTAGACATGGAATGAACTCCGTATG
14826161 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:14826493 original size:26 final size:26
Alignment explanation
Indices: 14826452--14826503 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14826442 CAGTCTGATT
14826452 TTAGACAGGGAATGAACTTTGTATGC
1 TTAGACAGGGAATGAACTTTGTATGC
* *
14826478 TTAGACATGGATTGAACTTTGTATGC
1 TTAGACAGGGAATGAACTTTGTATGC
14826504 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTTTGTATGC
Found at i:14827185 original size:26 final size:26
Alignment explanation
Indices: 14827147--14827199 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14827137 CTAGTCTGAT
14827147 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14827173 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14827199 C
1 C
14827200 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14827688 original size:26 final size:26
Alignment explanation
Indices: 14827647--14827699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14827637 CCGATCCGAT
14827647 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14827673 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
14827699 C
1 C
14827700 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14835930 original size:26 final size:26
Alignment explanation
Indices: 14835901--14835953 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14835891 CCTGTCCGAT
14835901 CTTAGACT-GGGATTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCTGTATG
*
14835927 CTTAGGCTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
14835953 C
1 C
14835954 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:14836661 original size:26 final size:26
Alignment explanation
Indices: 14836623--14836675 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14836613 GGCTCAAAAT
*
14836623 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14836649 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14836675 C
1 C
14836676 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14837164 original size:26 final size:26
Alignment explanation
Indices: 14837123--14837175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14837113 CCGGTTTCAT
14837123 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* * *
14837149 CTTAGACTGGGGATGAAGTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
14837175 C
1 C
14837176 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:14837518 original size:26 final size:25
Alignment explanation
Indices: 14837479--14837530 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14837469 CCGATCCGAT
14837479 CTTAGACTGGAATGAACTTCGTATG
1 CTTAGACTGGAATGAACTTCGTATG
14837504 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-TGGAATGAACTTCGTATG
14837530 C
1 C
14837531 CTAGGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTTCGTATG
Found at i:14837552 original size:355 final size:356
Alignment explanation
Indices: 14836924--14837600 Score: 859
Period size: 355 Copynumber: 1.9 Consensus size: 356
14836914 CCCTCTGCAT
* * * *
14836924 GCTGTCGGTCCCGCTGCCACAACCCTCAATTCGGCTGGGGCTTAGACATGGAATGAACTCCTTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCTTAT
* * * **
14836989 GCCTAAGCCAACCCAAGAAACGGGGTGTGCTGGCACTCAGCCGGCCGGAGAGGCAAAATTCGCAA
66 GCCTAAGCCAACCCAAGAAACGGAGCGTGCAGGCACTCAGCAAGCCGGAGAGGCAAAATTCGCAA
* * * *
14837054 GCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCAGATGCTACTGCCGCAACCTTCGGTCCGGTT
131 GCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCAGATCCTACTGCCGCAACCTTCGATCCGGAT
* * *
14837119 TCATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAAGTCTGTATGCCTAAGTCA
196 CCATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAAGTCTGTATGCCTAAGCCA
** * *
14837184 ACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGCATAATGCGCAAGCCTGGGATCA
261 ACCCACGAAACGAGCGAACAGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCA
14837249 GCCCGATCCCATTCTGTGTGCTGCCTATCCC
326 GCCCGATCCCATTCTGTGTGCTGCCTATCCC
* ** *
14837280 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATTGAATGAACT-CTGTA
1 GCTGCCGGTCCCGCTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCT-TA
* * * *
14837344 TGCCTAAGCCAACCCATGAAA-TGAGCGTGCAGGCACTCAGCAAGCCGGAGAGGCAGAATGT-GG
65 TGCCTAAGCCAACCCAAGAAACGGAGCGTGCAGGCACTCAGCAAGCCGGAGAGGCAAAAT-TCGC
* * *
14837407 AAGCCAGGTATCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTC-ATCC
129 AAGCCAGGGATCGACCCGAT-CCCCCCTGCGTGCTGCAGATCCTACTGCCGCAA-CCTTCGATCC
*
14837471 -GATCCGATCTTAGACT-GGAATGAACT-TCGTATGCTTAGACAT-GGAATGAACT-TCGTATGC
192 GGATCC-ATCTTAGACTAGGAATGAACTCT-GTATGCTTAGAC-TGGGAATGAAGTCT-GTATGC
* * * * ** * *
14837531 CTAGGCCAACCCATGAAACGAGTGAACGGGTGCTTAGCCGGCCAGAGAGGCAGAATGCGCAAGCC
253 CTAAGCCAACCCACGAAACGAGCGAACAGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCC
14837596 GGGGA
318 GGGGA
14837601 CCAACCCAAT
Statistics
Matches: 273, Mismatches: 40, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
354 2 0.01
355 148 0.54
356 118 0.43
357 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (356 bp):
GCTGCCGGTCCCGCTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCTTAT
GCCTAAGCCAACCCAAGAAACGGAGCGTGCAGGCACTCAGCAAGCCGGAGAGGCAAAATTCGCAA
GCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCAGATCCTACTGCCGCAACCTTCGATCCGGAT
CCATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAAGTCTGTATGCCTAAGCCA
ACCCACGAAACGAGCGAACAGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCA
GCCCGATCCCATTCTGTGTGCTGCCTATCCC
Found at i:14837677 original size:184 final size:184
Alignment explanation
Indices: 14837319--14837687 Score: 456
Period size: 184 Copynumber: 2.0 Consensus size: 184
14837309 TCCGACTAGG
* * **
14837319 GCTTAGACATTGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGAACAGGCACTCAG
* * * * * * * *
14837384 CAAGCCGGAGAGGCAGAATGTGGAAGCCAGGTATCGACCCGATCCCCCCCTGCGTGCTGCCGATC
66 CAAGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCAACCCAATCCCCCCCTGCGTGCTACCGATC
*
14837449 CTACTGCTGCAACCCTTCATCCGATCCGATCTTAGACTGGAATGAACTTCGTAT
131 CTACTGCTGCAACCCTTCATCCGATCCGATCTTAGACTGGAATGAACTCCGTAT
* * * ** *
14837503 GCTTAGACATGGAATGAACT-TCGTATGCCTAGGCCAACCCATGAAACGAGTGAACGGGTGCTTA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGAACAGGCACTCA
** * *
14837567 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGACCAACCCAAT-CCCCCCTGCGTGCTATCGAT
65 GCAAGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCAACCCAATCCCCCCCTGCGTGCTACCGAT
* * *
14837631 CCTGCTGCTGCAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTACTGCTGCAACCCTTC-ATCCGATCCGATCTTAGACT-GGAATGAACTCCGTAT
14837687 G
1 G
14837688 ACTAAGTCAA
Statistics
Matches: 156, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
182 2 0.01
183 52 0.33
184 102 0.65
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGAACAGGCACTCAG
CAAGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCAACCCAATCCCCCCCTGCGTGCTACCGATC
CTACTGCTGCAACCCTTCATCCGATCCGATCTTAGACTGGAATGAACTCCGTAT
Found at i:14837985 original size:159 final size:158
Alignment explanation
Indices: 14837504--14838005 Score: 467
Period size: 159 Copynumber: 3.2 Consensus size: 158
14837494 ACTTCGTATG
* * * ** * *
14837504 CTTAGAC-ATGGAATGAACTTCGTATGCCTAGGCCAACCCATGAAACGAGTGAACGGGTGCTTAG
1 CTTAGACTA-GGAATGAACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * *
14837568 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGACCAACCCAAT-CCCCCCTGCGTGCTATCGATC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCAGTCCCCCCCTACGTGCTATCGATC
* **
14837632 CTGCTGCTGCAACCCTCGGTCCGGTCCGAT
129 CTGCTGCCGCAACCCTCGGTCCGGTATGAT
* * * * *
14837662 CTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGT
1 CTTAGACTAGGAATGAACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
14837727 CGACCGAAGAGGCATAATGTGCAAGCTGAGGATCGGCTC-GATCCCCCTCTACATGCTACCGGTC
65 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCAG-TCCCCCCCTACGTGCTATCGATC
* * * **
14837791 CTGCTGTCACAACGCTCGGTCC-G-ACTGGGG
129 CTGCTGCCGCAACCCTCGGTCCGGTA-T-GAT
* * * *
14837821 ATTAGAC-ATGGAATGAACTCCCTATGCGTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGC-TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * *
14837885 CCGGTGGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCTCAGTCCCCCCCTACGTGCTGTCGATC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCAGTCCCCCCCTACGTGCTATCGATC
14837950 CTGCTGCCGCAACCCTCGGTCCGGTATGAT
129 CTGCTGCCGCAACCCTCGGTCCGGTATGAT
* *
14837980 CTTAGACTAGGTATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCGTATG
14838006 GTTATACTGG
Statistics
Matches: 266, Mismatches: 67, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
158 83 0.31
159 178 0.67
160 4 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCAGTCCCCCCCTACGTGCTATCGATCCT
GCTGCCGCAACCCTCGGTCCGGTATGAT
Found at i:14839034 original size:157 final size:158
Alignment explanation
Indices: 14838715--14839207 Score: 421
Period size: 157 Copynumber: 3.1 Consensus size: 158
14838705 AACTCCACAT
* * * * * *
14838715 GCTTAGACAT-GGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGTGTGTGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14838779 GCCAGTC-AGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCTTGCT-TCGA
65 ACCAGCCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGAT-CCCCCCTGCGTGCTGTCGA
** ** * * *
14838842 TCCTACTGTCGCAACCCTC-GTC--CAGTCTAA
128 TCCCGCTACCACAACCCTCGGTCTGC-TTC-GA
* * * *
14838872 TCTTAGACTGGGAGTGAACTCCATAT-CCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACTGGGAATGAACTCCATATACC-TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
14838936 GCCAGCCGAATAGGCATAATGCGCAAGCCGAGGATCTGCCCGGT-CCCTCTGTGTGCTGTCGGTC
65 ACCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* ** * *
14839000 CTGCTGGCATAACCCTCGGTCTGACTT-GG
130 CCGCTACCACAACCCTCGGTCTG-CTTCGA
* *
14839029 GCTTAGACAT-GAAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
14839093 ATCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
65 ACCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* *
14839158 CCGCTACCACAACCCTTGGTCTGGTTCGA
130 CCGCTACCACAACCCTCGGTCTGCTTCGA
*
14839187 TCTTAGACTGGGAATGAACTC
1 GCTTAGACTGGGAATGAACTC
14839208 GTATGCTCAG
Statistics
Matches: 269, Mismatches: 54, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
155 10 0.04
156 21 0.08
157 179 0.67
158 57 0.21
159 1 0.00
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCTGCTTCGA
Found at i:14839228 original size:25 final size:26
Alignment explanation
Indices: 14839191--14839239 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
14839181 GTTCGATCTT
14839191 AGACTGGGAATGAACT-CGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
*
14839216 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14839240 GTAAGTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:14839833 original size:158 final size:157
Alignment explanation
Indices: 14839351--14839846 Score: 466
Period size: 158 Copynumber: 3.1 Consensus size: 157
14839341 CCGCTACCGG
* * *
14839351 TCCTGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTTGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
** * * * ** *
14839416 CAACCCGTGAAATGAGCATGCGGGCGATCAGCTGGCCGGAGACACAGAATGCGCAACCCGGGGAT
66 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCTAGCCGGAGAGGCAGAATGCGCAA-GCGGGGAT
14839481 CGG-CCTGGTCGCCCCCTGCGTGCTGTCGA
130 CGGTCC-GGTCG-CCCCTGCGTGCTGTCGA
* * * ** * *
14839510 TCCTGCTATCGA-AA-CCTTGGTCCGA-TCTGATCTTAGA-TTGGGAATGAACTCTGTATGCATA
1 TCCTGCT-GCCACAACCCTCGGTCCGACT-TGGGCTTAGACAT-GGAATGAACTCTGTATGCCTA
* * * * * * * *
14839571 AGTCAACCCACGAAATGAGCGTACTGGCGCTAAGC-CGACTGGAGAGGCATAATGCGCATGCGGG
63 AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTAG-CCGGAGAGGCAGAATGCGCAAGCGGG
* * * *
14839635 GATCCGTCCGGTC-CCCCTTTGCATGCTGCCGG
127 GATCGGTCCGGTCGCCCC--TGCGTGCTGTCGA
* * ** *
14839667 TCCCGCTGCCACAACCCTCAGTCCGACTTGGGCTTAGACATGGAATGAACTCCCTATGCCTCAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTTGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
* * * *
14839732 CAACCCACGAAACGGGCGTGCGGGCGCTCAGCTAGCCAGAGAGGCAGAATACGCAAGCTGGGGAT
66 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCTAGCCGGAGAGGCAGAATGCGCAAGC-GGGGAT
* *
14839797 CGGTCCGATCGCCCCTGCGTGCTATCGA
130 CGGTCCGGTCGCCCCTGCGTGCTGTCGA
**
14839825 TCCTGCTGCTGCAACCCTCGGT
1 TCCTGCTGCCACAACCCTCGGT
14839847 TCGGTCCGAT
Statistics
Matches: 260, Mismatches: 63, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
155 4 0.02
156 2 0.01
157 34 0.13
158 188 0.72
159 26 0.10
160 6 0.02
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGGTCCGACTTGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
CAACCCACGAAATGAGCGTGCGGGCGCTCAGCTAGCCGGAGAGGCAGAATGCGCAAGCGGGGATC
GGTCCGGTCGCCCCTGCGTGCTGTCGA
Found at i:14840631 original size:26 final size:26
Alignment explanation
Indices: 14840581--14840632 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14840571 GCTCAAAATG
*
14840581 TTAGACTGGGAATGAACTCTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
14840607 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
14840633 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14840806 original size:26 final size:26
Alignment explanation
Indices: 14840777--14840829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14840767 CTGGTCCAAT
14840777 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
14840803 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14840829 C
1 C
14840830 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14840943 original size:26 final size:26
Alignment explanation
Indices: 14840905--14840957 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14840895 GGCTCAAAAT
14840905 CTTAGACTAGGAATGAACTCCACATG
1 CTTAGACTAGGAATGAACTCCACATG
*
14840931 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCACATG
14840957 C
1 C
14840958 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:14841005 original size:128 final size:128
Alignment explanation
Indices: 14840774--14841014 Score: 383
Period size: 128 Copynumber: 1.9 Consensus size: 128
14840764 GGTCTGGTCC
* *
14840774 AATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTAGGAATGAACTCCACATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
* **
14840839 CGCACGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAGAGGTACAATGTGCACCGTGGCTCAA
66 CCCACGAAACGAGCGTACGGGCGCTCAGCCAATCGGAGAGGTACAATGTGCACCGTGGCTCAA
*
14840902 AATCTTAGACTAGGAATGAACTCCACATGCTTAGACATGGAATGAACTCCATATGCCTAGGCCAA
1 AATCTTAGACTAGGAATGAACTCCACATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
14840967 CCCATGAAACGAGTGTGCGGGCGCTCAGCCAATTGGAGAGGTAGAATG
66 CCCACGAAACGAGCGTACGGGCGCTCAGCCAATCGGAGAGGTACAATG
14841015 CACAAGCCAG
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
128 102 1.00
ACGTcount: A:0.31, C:0.24, G:0.26, T:0.20
Consensus pattern (128 bp):
AATCTTAGACTAGGAATGAACTCCACATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGAGCGTACGGGCGCTCAGCCAATCGGAGAGGTACAATGTGCACCGTGGCTCAA
Found at i:14841230 original size:158 final size:157
Alignment explanation
Indices: 14840931--14841431 Score: 400
Period size: 158 Copynumber: 3.2 Consensus size: 157
14840921 ACTCCACATG
* * * * * *
14840931 CTTAGACAT-GGAATGAACTCCATATGCCTAGGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAAAGAGCGTGTGGGCGCTCAG
* ** * * * * * * * * ***
14840995 CCAATTGGAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGTC-CTCCCTGCTTGCTGTTGATC
65 CCGACCGAAGAGGCAGAACGCGCAAGCCAAGGATCGGCCCGATCGC-CCCTGCGTGCTACCGATC
* * *
14841059 CTGCTGCCCCAACCCTCGGTCCAGTCTAAT
129 CTACTGGCACAACCCTCGGTCC-GTCTAAT
* * *
14841089 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAAAGAGCGTGTGGGCGCTCAGC
* * * * * * *
14841154 CGGCCGAATAGGCATAATGCGCAAGCCAAGGATCTGCCC-ATC-CCTTTCTGCGTGCTACCGGTC
66 CGACCGAAGAGGCAGAACGCGCAAGCCAAGGATCGGCCCGATCGCC--CCTGCGTGCTACCGATC
** * ***
14841217 CTACTGGCACAACCCTCAATCCGGCTGGGG
129 CTACTGGCACAACCCTCGGTCCGTCT-AAT
* * *
14841247 CTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAAAGGGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAAAGAGCGTGTGGGCGCTCAG
* * ** * * **
14841311 CCGATCGAAGAGGCAGAACGCTCAAGCCGGGGATGGGCCCGGTCGCCCCTGCGTGCTGTCGATCC
65 CCGACCGAAGAGGCAGAACGCGCAAGCCAAGGATCGGCCCGATCGCCCCTGCGTGCTACCGATCC
* * * * *
14841376 TGCTGTCGCAACCCTCGGTCTGGTCCAAT
130 TACTGGCACAACCCTCGGTC-CGTCTAAT
14841405 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
14841432 TTAGACTAGG
Statistics
Matches: 266, Mismatches: 68, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 250 0.94
159 5 0.02
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAAAGAGCGTGTGGGCGCTCAGC
CGACCGAAGAGGCAGAACGCGCAAGCCAAGGATCGGCCCGATCGCCCCTGCGTGCTACCGATCCT
ACTGGCACAACCCTCGGTCCGTCTAAT
Found at i:14841434 original size:26 final size:26
Alignment explanation
Indices: 14841405--14841457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14841395 CTGGTCCAAT
14841405 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
14841431 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
14841457 C
1 C
14841458 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:14843027 original size:26 final size:26
Alignment explanation
Indices: 14842989--14843041 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14842979 GGCTCAAACT
*
14842989 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14843015 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14843041 C
1 C
14843042 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14843374 original size:26 final size:25
Alignment explanation
Indices: 14843334--14843386 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
14843324 GATCCCATCT
14843334 TAGACTGGGATGAACTCCGTATGCC
1 TAGACTGGGATGAACTCCGTATGCC
*
14843359 TAGACTGGGGATGAACTTCGTATGCC
1 TAGACT-GGGATGAACTCCGTATGCC
14843385 TA
1 TA
14843387 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (25 bp):
TAGACTGGGATGAACTCCGTATGCC
Found at i:14844425 original size:26 final size:26
Alignment explanation
Indices: 14844396--14844445 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14844386 CCAGTTCGAT
*
14844396 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14844422 CTTAGACTGGGTATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14844446 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14844823 original size:158 final size:158
Alignment explanation
Indices: 14844618--14845119 Score: 500
Period size: 158 Copynumber: 3.2 Consensus size: 158
14844608 ACTCTGTATG
*
14844618 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGACGGGCGCTCAG
* * *
14844682 CCGACCAAAGAGGCAGAATGCGCAAGCTGAGGACCGATCCGATCCCCCCTTACGTGCTATCGATC
66 CCGACCAGAGAGGCAAAATGCGCAAGCTGAGGACCG-TCCGATCCCCCCTTACGTGCTGTCGATC
*
14844747 CTGCTGCCACAACCCTCGGTCCGATCCGAT
130 CTGCTGCCACAACCCTCGATCC-ATCCGAT
* * * *
14844777 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGTCGGGCACTGAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGACGGGCGCTCAG
* * * * * * *
14844840 CCGACCAGAGAGGCATAATGCGTAAGCCGAGGACAGGCTCGAT-CCCCCTCTGCGTGCTGTCGGT
66 CCGACCAGAGAGGCAAAATGCGCAAGCTGAGGACCGTC-CGATCCCCCCT-TACGTGCTGTCGAT
* * * * **
14844904 CCTGCTACCACAACCCTTAGTTCCA-CTGGGG
129 CCTGCTGCCACAACCC-TCGATCCATC-CGAT
* *
14844935 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAACCG-G-GTGAACGGGCGCTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-ACGGGCGCTCA
* ** * * * * * *
14844998 GCCGGCTGGATAGGCAAAATGTGCAAGCTGAGGATCGGTCTGGTCCCCCC-TACATGCTGTCGAT
65 GCCGACCAGAGAGGCAAAATGCGCAAGCTGAGGA-CCGTCCGATCCCCCCTTACGTGCTGTCGAT
* * * *
14845062 CCTACTGCCACAACCTTCGATCTAGTCTGAT
129 CCTGCTGCCACAACCCTCGATCCA-TCCGAT
* *
14845093 CTTAGA-TTGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14845120 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 52, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
157 16 0.06
158 169 0.61
159 85 0.31
160 8 0.03
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGACGGGCGCTCAG
CCGACCAGAGAGGCAAAATGCGCAAGCTGAGGACCGTCCGATCCCCCCTTACGTGCTGTCGATCC
TGCTGCCACAACCCTCGATCCATCCGAT
Found at i:14845129 original size:26 final size:26
Alignment explanation
Indices: 14845093--14845145 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14845083 CTAGTCTGAT
* *
14845093 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14845119 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14845145 C
1 C
14845146 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14845490 original size:26 final size:26
Alignment explanation
Indices: 14845461--14845513 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14845451 CCGGTTCGAT
*
14845461 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
14845487 CTTAGACTAGGGGTGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
14845513 C
1 C
14845514 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:14845492 original size:184 final size:192
Alignment explanation
Indices: 14845302--14845779 Score: 544
Period size: 202 Copynumber: 2.5 Consensus size: 192
14845292 TCCGACTGGG
* * * *
14845302 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTAAGGAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAA
* * * *
14845367 TCGATCGGAGAGGCAGAATGCGTAAGCTGAAGATTGGCCTGGTCCCCCCT-ACG-TGCTG-TCCA
66 TCGGTCGGAGAGGCAGAATGCGTAAGCTGAAGATCGACCCGGTCCCCCCTCACGCTGCTGATCCA
*
14845429 TC-CT-G-CTGC-C-ACAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
131 TCACTGGCCTGCACGACAACCCTCGATCCGGTTCAATCTTAGACTGGGAATGAACTCCGTAT
** * * *
14845486 GCTTAGAC-TAGGGGTGAACTCCATATGCCTAAGTCAGCCCACA-AAACGAGCGTGCGGGCGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAACGAGCGTGCGGGCGCTC
* * *
14845549 AATCGGTCGGAGAGGTCGACCGAAAAATGCGCAAGCTGAGGATCGACCCGGTCCCCCCTGCATGC
64 AATCGGTCGGAGAGG-C-A--G---AATGCGTAAGCTGAAGATCGACCCGGTCCCCCCT-CACGC
* * * *
14845614 TGTTGATCCGTCACTGGTCCTGCTACGACAACCCTCGATCTGGTTCAATCTTTGACTGGGAATGA
121 TGCTGATCCATCACTGG-CCTGC-ACGACAACCCTCGATCCGGTTCAATCTTAGACTGGGAATGA
14845679 ACTCCGTAT
184 ACTCCGTAT
* * * *
14845688 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAA
*
14845753 CCGGTCGGAGAGGCAGAATGCGTAAGC
66 TCGGTCGGAGAGGCAGAATGCGTAAGC
14845780 CGGGGACCGA
Statistics
Matches: 240, Mismatches: 32, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
183 1 0.00
184 64 0.27
185 2 0.01
186 1 0.00
188 1 0.00
191 29 0.12
193 2 0.01
194 4 0.02
195 15 0.06
196 2 0.01
197 1 0.00
198 1 0.00
199 4 0.02
200 1 0.00
201 2 0.01
202 109 0.45
203 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (192 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAA
TCGGTCGGAGAGGCAGAATGCGTAAGCTGAAGATCGACCCGGTCCCCCCTCACGCTGCTGATCCA
TCACTGGCCTGCACGACAACCCTCGATCCGGTTCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14846558 original size:159 final size:158
Alignment explanation
Indices: 14846213--14846652 Score: 431
Period size: 159 Copynumber: 2.8 Consensus size: 158
14846203 AACTCCATAT
* * * *
14846213 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCATGAAACGAGCGTGCGGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTAAA
* * * * * **
14846278 CCGGTCGGAA-AGGCAGAATGCGTAAGTCGGGAACCGGCCCGATCTTCCCTACGTGCTATCGATC
66 TCGGTC-GAAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCAATCCCCCCTACGTGCTATCGATC
* *** * *
14846342 CTGCTGTGGCAACCCTCGGTCCGGTCCGA
130 CCGCTGCCACAACCCTCGATCCGATCCGA
* ** * * * * *
14846371 TCTTAGAC-TAGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTAA
* * * * *
14846435 GTCGGTCGAAGAGGCATAATGCGTAAGTCGGGGATTGGCTCAATCCCCCTCTGCGTGCTATCGGT
65 ATCGGTCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCAATCCCCC-CTACGTGCTATCGAT
* *
14846500 CCCGCTGCCACAACCCTCGATCCAGAT-GGG
129 CCCGCTGCCACAACCCTCGATCC-GATCCGA
* *
14846530 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCATGAAACG-GATGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-TGTGCGGGTGCT-A
* * ** * *
14846594 AAT-GGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCTCTTACGTGCTA
64 AATCGGTCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCAATCCCCCCTACGTGCTA
14846653 CGGATGCTAC
Statistics
Matches: 224, Mismatches: 51, Indels: 14
0.78 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 95 0.42
159 120 0.54
160 5 0.02
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTAAA
TCGGTCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCAATCCCCCCTACGTGCTATCGATCC
CGCTGCCACAACCCTCGATCCGATCCGA
Found at i:14847387 original size:26 final size:26
Alignment explanation
Indices: 14847349--14847401 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14847339 GGCTCAAACT
*
14847349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
14847375 CTTAGACAT-GGAATCAACTCTGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
14847401 C
1 C
14847402 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:14848443 original size:26 final size:26
Alignment explanation
Indices: 14848414--14848466 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14848404 CCGATCCGAT
*
14848414 CTTAGAC-TAGGAATTAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14848440 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14848466 C
1 C
14848467 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14849299 original size:26 final size:26
Alignment explanation
Indices: 14849270--14849319 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14849260 CCGATCGGAT
14849270 CTTAGAC-TGGGAATGAACTCCGTACA
1 CTTAGACAT-GGAATGAACTCCGTACA
14849296 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
14849320 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACA
Found at i:14850655 original size:159 final size:159
Alignment explanation
Indices: 14850332--14850677 Score: 374
Period size: 159 Copynumber: 2.2 Consensus size: 159
14850322 AACTCCGTAT
* *
14850332 GCTTAGACAT-GCAATGAACTTCGTATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATAG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
14850396 GCCAGTTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCTCCTTTGCGTGCTACCGGT
65 GCCAGTCGGAGAGGCAAAATGCCCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGAT
** * * ** * *
14850461 CCCGTTGCCACATCTCTTGGTCTAGCTTGG
130 CCCACTGCCACAACCCTCAGTCCAGCTTGA
* * *
14850491 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * ** * *
14850556 CCGGTCGGAGAGGTAAAATGCCCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCTGATC
66 CCAGTCGGAGAGGCAAAATGCCCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
* * *
14850621 CTACTGTCGCAACCCTCAGTCCAG-TTCGA
131 CCACTGCCACAACCCTCAGTCCAGCTT-GA
*
14850650 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACATA-GAATGAACTCCGTATGC
14850678 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
158 4 0.03
159 148 0.97
160 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCAGTCGGAGAGGCAAAATGCCCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
CCACTGCCACAACCCTCAGTCCAGCTTGA
Found at i:14850692 original size:26 final size:26
Alignment explanation
Indices: 14850651--14850703 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14850641 CCAGTTCGAT
*
14850651 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14850677 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14850703 C
1 C
14850704 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14851914 original size:26 final size:26
Alignment explanation
Indices: 14851885--14851937 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14851875 CCGGTTCGAT
14851885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14851911 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14851937 C
1 C
14851938 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14852464 original size:26 final size:26
Alignment explanation
Indices: 14852435--14852486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14852425 TCGATCCGAT
14852435 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14852461 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14852487 TCGCAACCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14852741 original size:26 final size:26
Alignment explanation
Indices: 14852712--14852764 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14852702 CCGATCTGAT
* *
14852712 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
14852738 CTTAGACAGGGGATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14852764 C
1 C
14852765 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14853189 original size:159 final size:159
Alignment explanation
Indices: 14852922--14853283 Score: 372
Period size: 159 Copynumber: 2.3 Consensus size: 159
14852912 CTGACTAGAG
* * *
14852922 CTTAGACTTGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAAC
1 CTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAACATGCAGGCGCTCAAC
* * * * * *
14852987 CGGCCAGAGAGGCAGAATGTGCAAGCCAGGGACCGACCTGATCCCCCCCTGCGTGCTATCGAT-T
66 CGACCAGAGAGGCAGAATATGCAAGCCAGGGACCGACCCGATCCCCCCCTACATGCTATCGGTCT
*
14853051 CTGCTGCCACAACCCTCGGTCCGGTCCGAT
131 C-GCAGCCACAACCCTCGGTCCGGTCCGAT
* * * * * * *
14853081 CTTAGAC-TGAGAATGAACTTCGTATGCCTAAGTCAATCCATGAAATGAGCATGCAGGTGCTGAG
1 CTTAGACTTG-GAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAACATGCAGGCGCTCAA
* ** * * *
14853145 CCGACC-GAAGAGGCATAATATGCAAGCTGGGGATCGGCCCGATCCCCCTCTACATGCTATCGGT
65 CCGACCAG-AGAGGCAGAATATGCAAGCCAGGGACCGACCCGATCCCCCCCTACATGCTATCGGT
* * **
14853209 CTCGCAGCCACAACCCTCGGTCC-GACTGGGG
129 CTCGCAGCCACAACCCTCGGTCCGGTC-CGAT
* * * * *
14853240 CTTAGACATGGAACGAACTCCCTATGCCTAACCCAACCCACGAA
1 CTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
14853284 CGGATGGTAG
Statistics
Matches: 164, Mismatches: 34, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
158 5 0.03
159 155 0.95
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
CTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAACATGCAGGCGCTCAAC
CGACCAGAGAGGCAGAATATGCAAGCCAGGGACCGACCCGATCCCCCCCTACATGCTATCGGTCT
CGCAGCCACAACCCTCGGTCCGGTCCGAT
Found at i:14854528 original size:26 final size:26
Alignment explanation
Indices: 14854492--14854543 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14854482 CCGGTCCAGT
*
14854492 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14854518 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14854544 AGTATGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14854649 original size:184 final size:184
Alignment explanation
Indices: 14854406--14854800 Score: 490
Period size: 184 Copynumber: 2.1 Consensus size: 184
14854396 AGCTAACCGA
* *
14854406 AGAGGCAGAATACGCAAGTTGGGGATCGGTCCGGTCCCCCCTACGTGCTACAAATCCTGCTACCG
1 AGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCTACGTGCTACAAATCCTGCTACCG
* * *
14854471 CAACCCTCGGTCCGGTCCAGTCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGGATGAA
66 CAACCCTCGGTCCCGTCCAATCTTAGACTAGGAATGAACTTC-GTATGCTTAGACTGGGGATGAA
* * * * ** * *
14854535 CTCCGTATGA-GTATGTCAACACATGAAACGGGTTTACGGGCACTCAGCCGGTCGG
130 CTCCATAT-ACCTAAGTCAACACATGAAACGAGCGTACGGGCACCCAGCCGGCCGG
* * * * * * *
14854590 AGAGGTAGAATGCGCAAGTTGGGGATTGGCCCGGTCCCTCCTGCGTGCTGTC-GATCCTGCTGCC
1 AGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCTACGTGCT-ACAAATCCTGCTACC
* *
14854654 GCATCCCTTGGTCCCGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAA
65 GCAACCCTCGGTCCCGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAA
* * *
14854719 CTCCATATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCCCAGCCGGCCGG
130 CTCCATATACCTAAGTCAACACATGAAACGAGCGTACGGGCACCCAGCCGGCCGG
* **
14854774 AAAGGCAGAATGCGCAAGCCGGGGATC
1 AGAGGCAGAATGCGCAAGTTGGGGATC
14854801 AACCCAGTCC
Statistics
Matches: 178, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 174 0.98
185 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (184 bp):
AGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCTACGTGCTACAAATCCTGCTACCG
CAACCCTCGGTCCCGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
TCCATATACCTAAGTCAACACATGAAACGAGCGTACGGGCACCCAGCCGGCCGG
Found at i:14854813 original size:184 final size:185
Alignment explanation
Indices: 14854459--14854839 Score: 462
Period size: 184 Copynumber: 2.1 Consensus size: 185
14854449 CGTGCTACAA
* * * *
14854459 ATCCTGCTACCGCAACCCTCGGTCCGGTCCAGTCTTAGACTGGGAATGAACTCTGTATGCTTAGA
1 ATCCTGCTGCCGCAACCCTCGGTCCCGTCCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGA
* * * * ** * *
14854524 CTGGGGATGAACTCCGTATGAGTATGTCAACACATGAAACGGGTTTACGGGCACTCAGCCGGTCG
66 CTGGGGATGAACTCCATATGACTAAGTCAACACATGAAACGAGCGTACGGGCACCCAGCCGGCCG
* * ** *** * * *
14854589 GAGAGGTAGAATGCGCAAGTTGGGGATTGGCCCGGTCCCT-CCTGCGTGCTGTCG
131 GAAAGGCAGAATGCGCAAGCCGGGGATCAACCCAGTCCCTCCCTGCATGCTGCCG
* *
14854643 ATCCTGCTGCCGCATCCCTTGGTCCCGTCCAATCTTAGACTAGGAATGAACT-TCGTATGCTTAG
1 ATCCTGCTGCCGCAACCCTCGGTCCCGTCCAATCTTAGACTAGGAATGAACTCT-GTATGCTTAG
* * *
14854707 ACTGGGGATGAACTCCATAT-ACCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCCCAGCCGGC
65 ACTGGGGATGAACTCCATATGA-CTAAGTCAACACATGAAACGAGCGTACGGGCACCCAGCCGGC
*
14854771 CGGAAAGGCAGAATGCGCAAGCCGGGGATCAACCCAGTCCCTCCCTTCATGCTGCCG
129 CGGAAAGGCAGAATGCGCAAGCCGGGGATCAACCCAGTCCCTCCCTGCATGCTGCCG
*
14854828 ATCCTACTGCCG
1 ATCCTGCTGCCG
14854840 GTCCTGCTAC
Statistics
Matches: 165, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
183 2 0.01
184 141 0.85
185 22 0.13
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (185 bp):
ATCCTGCTGCCGCAACCCTCGGTCCCGTCCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGA
CTGGGGATGAACTCCATATGACTAAGTCAACACATGAAACGAGCGTACGGGCACCCAGCCGGCCG
GAAAGGCAGAATGCGCAAGCCGGGGATCAACCCAGTCCCTCCCTGCATGCTGCCG
Found at i:14854911 original size:26 final size:26
Alignment explanation
Indices: 14854873--14854925 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14854863 TTGGTCTGAT
14854873 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14854899 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14854925 C
1 C
14854926 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14855353 original size:316 final size:315
Alignment explanation
Indices: 14854973--14855681 Score: 979
Period size: 316 Copynumber: 2.2 Consensus size: 315
14854963 TTGGCTCGAT
* * * * *
14854973 CCCCCTGCCTGCTGTCGATCCTGCTACTATAACCCTCGGTCCGATCCAATCTTAGACAGGGAATG
1 CCCCCTGCATGCTGTCGATCCTGCTGCTAGAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATG
*
14855038 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGACCCGGTCGGAGAGGCAT
65 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGACCCGATCGGAGAGGCAT
* * * * * * **
14855103 AATGCGCAAGTCGGGGATTGGCCCGGTCCCCCTCTGTGTGCTGCTGGTCCCGCTGTCACAACCCT
130 AATGCACAAGTCGGAGATCGACACGGTCCCCCTCTGCGTGCTGCTGGTCCCGCTACCACAACCCT
* * *
14855168 GGGTCCGGTTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGT
195 CGGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGT
* * * *
14855233 GTGGGTGTTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTC
260 GCGGATGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTC
* *
14855289 CCCCCTGCATGCTGTCAATCCTGCTGCTAGAACCCTCGGTCCTGTTCGATCTTAGACTGGGAATG
1 CCCCCTGCATGCTGTCGATCCTGCTGCTAGAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATG
* ** * *
14855354 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGAGCCGATCGGAGGGGCAT
65 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGACCCGATCGGAGAGGCAT
*
14855419 AATGCACAAGTCGGAGATCGACACGGTCCCCCTCTGCGTGCTGCTGGTCTCGCTACCACAACCCT
130 AATGCACAAGTCGGAGATCGACACGGTCCCCCTCTGCGTGCTGCTGGTCCCGCTACCACAACCCT
*** *
14855484 CGGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACAGGTGT
195 CGGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGT
* * * * *
14855549 GCGGATGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTC
260 GCGGATGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTC
** * * * *
14855605 CCCCCTGCATGCTACCGATCCTACTG-TCGCAACCCTCGATCCGGTCCGATCTTGGACTGGGAAT
1 CCCCCTGCATGCTGTCGATCCTGCTGCTAG-AACCCTCGGTCC-GTCCGATCTTAGACTGGGAAT
14855669 GAACTTCGTATGC
64 GAACTTCGTATGC
14855682 TTAGACTGGG
Statistics
Matches: 343, Mismatches: 48, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
315 2 0.01
316 340 0.99
317 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (315 bp):
CCCCCTGCATGCTGTCGATCCTGCTGCTAGAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGA
ACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGACCCGATCGGAGAGGCATA
ATGCACAAGTCGGAGATCGACACGGTCCCCCTCTGCGTGCTGCTGGTCCCGCTACCACAACCCTC
GGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTG
CGGATGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTC
Found at i:14855681 original size:158 final size:160
Alignment explanation
Indices: 14854957--14855681 Score: 629
Period size: 158 Copynumber: 4.6 Consensus size: 160
14854947 GCGTGAAAGT
* * * * * * *
14854957 CGGGGATTGGCTCGAT-CCCC-CTGCCTGCTGTCGATCCTGCT-ACTATAACCCTCGGTCCGATC
1 CGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGATCCTGCTGTC-ACAACCCTCGGTCCGGTC
* * * *
14855019 CAATCTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCA--
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGG-ATG
* * * * *
14855082 CTGACCCGGTCGGAGAGGCATAATGCGCAAGT
129 CTCAGCCGATCGGAGAGGCAGAATGCGCAAGC
* * ** * * * * *
14855114 CGGGGATTGGCCCGGTCCCCCTCTGTGTGCTGCTGGTCCCGCTGTCACAACCCTGGGTCCGGT-T
1 CGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGATCCTGCTGTCACAACCCTCGGTCCGGTCC
** * * * * * *
14855178 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTG-TGGGTGT
66 GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGATGC
** *
14855241 TCAGCCGGCCAGAGAGGCAGAATGCGCAAGC
130 TCAGCCGATCGGAGAGGCAGAATGCGCAAGC
* * * * * *
14855272 CGGGGATCAGCTCGGTCCCCC-CTGCATGCTGTCAATCCTGCTG-CTAGAACCCTCGGTCCTGTT
1 CGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGATCCTGCTGTC-ACAACCCTCGGTCCGGTC
*
14855335 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG-TGC
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGATGC
* * * * *
14855399 TGAGCCGATCGGAGGGGCATAATGCACAAGT
130 TCAGCCGATCGGAGAGGCAGAATGCGCAAGC
* * * * * * **
14855430 CGGAGATCGACACGGTCCCCCTCTGCGTGCTGCTGGT-CTCGCTACCACAACCCTCGGTCCGG-C
1 CGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGATCCT-GCTGTCACAACCCTCGGTCCGGTC
* ** * * * *
14855493 TGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGGAAC-AGGTGTGC-GGAT
65 CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGAT
* *
14855555 GCTCAGTCGATCGGAGAGGCAGAATGTGCAAGC
128 GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGC
* * * *
14855588 CGGGGATCGGCTCGGTCCCCC-CTGCATGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTCC
1 CGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGATCCTGCTGTCACAACCCTCGGTCCGGTCC
* *
14855652 GATCTTGGACTGGGAATGAACTTCGTATGC
66 GATCTTAGACTGGGAATGAACTCCGTATGC
14855682 TTAGACTGGG
Statistics
Matches: 442, Mismatches: 107, Indels: 37
0.75 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 78 0.18
158 302 0.68
159 59 0.13
160 2 0.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (160 bp):
CGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGATCCTGCTGTCACAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGATGCT
CAGCCGATCGGAGAGGCAGAATGCGCAAGC
Found at i:14856358 original size:159 final size:159
Alignment explanation
Indices: 14856112--14856619 Score: 589
Period size: 159 Copynumber: 3.2 Consensus size: 159
14856102 CACAACCGTG
14856112 GGTCCGGT-T-ATGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC
1 GGTCCGGTCTGAT-CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC
* * ** *
14856174 GTACGGGCACTCAGCCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCT
64 GTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCT
* * * *
14856239 CCGTGCTGTCGATCTTGCTACCGCAACCCTT
129 ACGTGCTGTCGATCCTGCTGCCGCAACCCTC
14856270 GGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCC-ACCCACGAAATGAGCG
1 GGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG-CCAACCCACGAAATGAGCG
* * * * * * * * *
14856334 TGTGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCTGATCCCTCTCTA
65 TGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCTA
* * * *
14856399 CATGCTGTCGGTCCCGCTGCCACAACCCTC
130 CGTGCTGTCGATCCTGCTGCCGCAACCCTC
* ** * * * *
14856429 GGTCC-GACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCG
1 GGTCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCG
* * * *
14856493 TGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGT-GCCCCCTG
65 TGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCTA
*
14856557 CGTGCTGTCGATCCTGCTGCTGCAACCCTC
130 CGTGCTGTCGATCCTGCTGCCGCAACCCTC
* * *
14856587 GATCCAGTCCGATCTTAGACT-GGAAATGAACTC
1 GGTCCGGTCTGATCTTAGACTAGG-AATGAACTC
14856620 TTTATGCTTA
Statistics
Matches: 289, Mismatches: 53, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 63 0.22
159 219 0.76
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT
GCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCTAC
GTGCTGTCGATCCTGCTGCCGCAACCCTC
Found at i:14856977 original size:945 final size:943
Alignment explanation
Indices: 14855120--14857010 Score: 2747
Period size: 945 Copynumber: 2.0 Consensus size: 943
14855110 AAGTCGGGGA
*
14855120 TTGGCCCGGTCCCCCTCTGTGTGCTGCTGGTCCCGCTGTCACAACCCTGGGTCCGGTTGGGCTTA
1 TTGGCCCGGTCCCCCTCTGTGTGCTGCTGGTCCCGCTGTCACAACCCTGGGTCCGGTTAGGCTTA
* ** *** *
14855185 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGTGGGTGTTCAGCCGGC
66 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGAC
* * *
14855250 CAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCATGCTGTCAATCCTGCTG
131 CAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTCCATGCTGTCAATCCTGCTA
* *
14855315 CTAGAACCCTCGGTCCTGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
196 CTAGAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
14855380 GAAACGAGCGTGCAGGTGCTGAGCCGATCGGAGGGGCATAATGCACAAGTCGGAGATCGACACGG
261 GAAACGAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAGTCGGAGATCGACACGA
* * * * *
14855445 TCCCCCTCTGCGTGCTGCTGGTCTCGCTACCACAACCCTCGGTCCGGCTGGGCTTAGACATGGAA
326 TCCCCCTCTACATGCTGCTGGTCCCGCTACCACAACCCTCGGTCCGACTGGGCTTAGACAAGGAA
* * * * *
14855510 TGAACTCCCTATGCCTAAGCCAACCCATGGAACAGGTGTGCGGATGCTCAGTCGATCGGAGAGGC
391 TGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGACGCTCAGCCGACCGGAGAGGC
* * *
14855575 AGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCC
456 AGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCC
* * * * *
14855640 TCGATCCGGTCCGATCTTGGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTA
521 TCGATCCAGTCCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGAGGATGAACTCCATA
** * * * * *
14855705 TGCCTAAGTCGACCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCAGAGAGGCAGGATGCGCAA
586 TGCCTAAGTAAACCCACGAAACCAACGTGCGGGCACTCAGCCAACCAGAGAGGCAGGATGCGCAA
* * *
14855770 GCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCGCATCTTCATATTTTTGCCATGCCAATGCC
651 GCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCATGCCAATGCC
* * *
14855835 ATTTTTATGGCTTGCAAATTCATACAATGGTCCCCTAAACCTTCATGTGAAGTTTCGTGGCAAGA
716 ATTTTTATGGCTTGCAAATTCAAAAAATGGTCACCTAAACCTTCATGTGAAGTTTCGTGGCAAGA
* * * *
14855900 CGACCCATTTTCTATTTTTCATGATTTTTAAAACTTTCTACGGTTCGGGATTTTTTAAAATTTTT
781 CGACCCATTTTCTATTTTTCACGATTTTTAAAACTTTCTACGGCTCGAGATTTTTAAAAATTTTT
* * * * *
14855965 TTAGAAAGAGTTTTGTCCCTAAATTTTCAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
846 TTAGAAAGAATTTTGTCCCCAAATTTTCAGAAGTAATCCATGTATTTTTGTTGGCATGCACAAAA
*
14856030 AAATTCAGCTAAAAACTCGAAGTGGAGAAGATT
911 AAATTCAACTAAAAACTCGAAGTGGAGAAGATT
* *
14856063 TTGGCCCGGTCCCCCTCTGTGTGCTGCTGGTCCCGCTGTCACAACCGTGGGTCCGGTTATGCTTA
1 TTGGCCCGGTCCCCCTCTGTGTGCTGCTGGTCCCGCTGTCACAACCCTGGGTCCGGTTAGGCTTA
* * *
14856128 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCGAC
66 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGAC
* * * * *
14856193 TAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTCCGTGCTGTCGATCTTGCT
131 CAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCCCTCCATGCTGTCAATCCTGCT
* * *
14856258 AC-CGCAACCCTTGGTCCGG-TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCCACC
195 ACTAG-AACCCTCGGTCCGGTTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* ** *
14856321 CACGAAATGAGCGTGTGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGTCAGG-GATCGAC
258 CACGAAACGAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAGTC-GGAGATCGAC
* *
14856385 -CTGATCCCTCTCTACATGCTG-TCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGA
322 AC-GATCCCCCTCTACATGCTGCT-GGTCCCGCTACCACAACCCTCGGTCCGACT-GGGCTTAGA
** * *
14856448 CAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGCCG
384 CAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGACGCTCAGCCGACCG
* * * ** *
14856513 GAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTGCCCCCTGCGTGCTGTCGATCCTGCTG-C
449 GAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTACCGATCCTACTGTC
*
14856577 TGCAACCCTCGATCCAGTCCGATCTTAGACTGGAAATGAAC-TCTTTATGCTTAGACTGAGGATG
514 -GCAACCCTCGATCCAGTCCGATCTTAGACTGGAAATGAACTTC-GTATGCTTAGACTGAGGATG
*
14856641 AACTCCATATGCCTAAGTAAACCCATGAAACCAACGTGCGGGCACTCAGCCAACCAGAGAGGCAG
577 AACTCCATATGCCTAAGTAAACCCACGAAACCAACGTGCGGGCACTCAGCCAACCAGAGAGGCAG
*
14856706 GATGCGCAAGCCGGTGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCAT
642 GATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCAT
* *
14856771 GCCAATGCCATTTTTATGGCTTGTAAATTCAAAAAATGGTCACCTAAGCCTTCATGTGAAGTTTC
707 GCCAATGCCATTTTTATGGCTTGCAAATTCAAAAAATGGTCACCTAAACCTTCATGTGAAGTTTC
* * *
14856836 GTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGCTCGAGATTTTTA
772 GTGGCAAGACGACCCATTTTCTATTTTTCACGATTTTTAAAACTTTCTACGGCTCGAGATTTTTA
*
14856901 AAAATTTTTTTAGAAAGAATTTTGTCCCCAAATTTGGT-AGAATTAATCCATGTATTTTTGTTGG
837 AAAATTTTTTTAGAAAGAATTTTGTCCCCAAATTT--TCAGAAGTAATCCATGTATTTTTGTTGG
*
14856965 CATGGA-AAAAAAATTCAACTAAAAACTCGAAGTGGAGAAGATT
900 CATGCACAAAAAAATTCAACTAAAAACTCGAAGTGGAGAAGATT
14857008 TTG
1 TTG
14857011 TGACCGTTTG
Statistics
Matches: 840, Mismatches: 97, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
943 157 0.19
944 173 0.21
945 482 0.57
946 27 0.03
947 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (943 bp):
TTGGCCCGGTCCCCCTCTGTGTGCTGCTGGTCCCGCTGTCACAACCCTGGGTCCGGTTAGGCTTA
GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGAC
CAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTCCATGCTGTCAATCCTGCTA
CTAGAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAGTCGGAGATCGACACGA
TCCCCCTCTACATGCTGCTGGTCCCGCTACCACAACCCTCGGTCCGACTGGGCTTAGACAAGGAA
TGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGACGCTCAGCCGACCGGAGAGGC
AGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCC
TCGATCCAGTCCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGAGGATGAACTCCATA
TGCCTAAGTAAACCCACGAAACCAACGTGCGGGCACTCAGCCAACCAGAGAGGCAGGATGCGCAA
GCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCATGCCAATGCC
ATTTTTATGGCTTGCAAATTCAAAAAATGGTCACCTAAACCTTCATGTGAAGTTTCGTGGCAAGA
CGACCCATTTTCTATTTTTCACGATTTTTAAAACTTTCTACGGCTCGAGATTTTTAAAAATTTTT
TTAGAAAGAATTTTGTCCCCAAATTTTCAGAAGTAATCCATGTATTTTTGTTGGCATGCACAAAA
AAATTCAACTAAAAACTCGAAGTGGAGAAGATT
Found at i:14863327 original size:25 final size:26
Alignment explanation
Indices: 14863281--14863332 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
14863271 CCGGTCTAAT
14863281 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14863307 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14863332 C
1 C
14863333 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14863696 original size:26 final size:26
Alignment explanation
Indices: 14863658--14863709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14863648 TCGGTACGAT
*
14863658 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14863684 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
14863710 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14864440 original size:27 final size:28
Alignment explanation
Indices: 14864410--14864470 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
14864400 AGACGACCCG
** * *
14864410 TTTTTTATTTTTCATGA-TTTTTGAAAC
1 TTTTTTATGGTTCAGGATTTTTTAAAAC
14864437 -TTTTTATGGTTCAGGATTTTTTAAAAC
1 TTTTTTATGGTTCAGGATTTTTTAAAAC
14864464 TTTTTTA
1 TTTTTTA
14864471 GAAAGAGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 13 0.46
27 9 0.32
28 6 0.21
ACGTcount: A:0.23, C:0.07, G:0.10, T:0.61
Consensus pattern (28 bp):
TTTTTTATGGTTCAGGATTTTTTAAAAC
Found at i:14866267 original size:26 final size:26
Alignment explanation
Indices: 14866231--14866283 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14866221 CCGGTCTGAT
14866231 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
14866257 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14866283 C
1 C
14866284 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14867166 original size:26 final size:26
Alignment explanation
Indices: 14867137--14867189 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14867127 TCGATCCAAT
14867137 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
* *
14867163 CTTAGACATGGAATTAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14867189 C
1 C
14867190 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14868015 original size:26 final size:26
Alignment explanation
Indices: 14867973--14868025 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14867963 CCGATCCGAT
*
14867973 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14867999 CTTAGACTAGGG-TTGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14868025 C
1 C
14868026 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14868491 original size:159 final size:157
Alignment explanation
Indices: 14867999--14868928 Score: 521
Period size: 159 Copynumber: 5.9 Consensus size: 157
14867989 ACTCTGTATG
* * * ** * * * *
14867999 CTTAGACTAGGG-TTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAA
1 CTTAGACT-GGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAG
* * * * *** * *
14868063 TCGGCCAGAGAGGCATAATGCGCAAGCTAAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
65 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCC
* *** * *
14868128 TGCTACTGCAACCATCGGTCCGGTCTGAT
130 TGCTGCCAAAACCCTCGGT-CTGTCTGAT
* * * * ** * * * *
14868157 TTTAGATTGGGAATGAACTGCATATGCCTATA-TCAACCCACGAAACAAGCGTGCGGGCACTGAG
1 CTTAGACTGGGAATGAACTCCATATGCCTA-AGCCAACCCATAAAACGAGCGTACGGGCGCTCAG
* * * * * * * * ** * ** * *
14868221 CCGACC-GAAGTGGCATAACGCGCAAGCCGGAGAACCGCTCGGTCCCCCTCTGCAAGCT-ACTAA
65 CCGACCAG-AGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCCC-CTACGTGCTGTC-GA
* * * * * * **
14868284 TCCCGCAGCCACAACACTCGATCTGACTGGGG
127 TCCTGCTGCCAAAACCCTCGGTCTGTCT-GAT
* * * *
14868316 CTTAGACAT-GAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAG
* ** * *
14868380 TCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCACCCTACGTGCTGTCGATC
65 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCC-CCCTACGTGCTGTCGATC
** ** * *
14868445 CTGCTATCGTAACCCTCGATCCGATCTGAT
129 CTGCTGCCAAAACCCTCGGTCTG-TCTGAT
* ** * *
14868475 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA-AGAAACGAGCGTTTGGGCACTGAG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATA-AAACGAGCGTACGGGCGCTCAG
* * * * * * * *
14868539 CCGACCAGAGAGGTATAATGCACAAGCCGGGGATCGGCTCAGTCCCCTTCTGCGTCCTGTCGATC
65 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCC-CCTACGTGCTGTCGATC
* * * **
14868604 CCGCTGCCACAACCCTCGGTCTGGCTAGGG
129 CTGCTGCCAAAACCCTCGGTCTGTCT-GAT
* **
14868634 CTTAGACAT-GGAATGAACTCTC-GATGCCTAAGCCAACCCATAAAACG-GACGTACGAACGCTC
1 CTTAGAC-TGGGAATGAACTC-CATATGCCTAAGCCAACCCATAAAACGAG-CGTACGGGCGCTC
* * * * * * **
14868696 CGCC-AGCCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCTACGTGCTACCGA
63 AGCCGA-CCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTGTCGA
* * *
14868760 TCTTGCTGCCAAAACCTTCGGTCTGGTCCGAT
127 TCCTGCTGCCAAAACCCTCGGTCT-GTCTGAT
* * * * * * * * *
14868792 CTTAGACTGGGAATGAACTCCATCTGCCTAAGTCAACCCACAAAATGAGCATGCAGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAGC
* * ** * * * *
14868857 CGATCAGAGAGGCATAATGTGCAAGCCGGAGATCAGCCTAATCCCCCTCTATGTGCTGTCAATCC
66 CGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCCC-CTACGTGCTGTCGATCC
*
14868922 CGCTGCC
130 TGCTGCC
14868929 GATCTTGCTG
Statistics
Matches: 577, Mismatches: 168, Indels: 53
0.72 0.21 0.07
Matches are distributed among these distances:
157 6 0.01
158 206 0.36
159 355 0.62
160 10 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAGC
CGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCCT
GCTGCCAAAACCCTCGGTCTGTCTGAT
Found at i:14868801 original size:819 final size:812
Alignment explanation
Indices: 14866636--14868814 Score: 1902
Period size: 819 Copynumber: 2.6 Consensus size: 812
14866626 AACTCCGTAT
* * * *
14866636 GCTTAGACATTGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACA-TGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
* * * * * * * *
14866701 CCGGTCGGAGAGGTAGAATGCATAAGCCGAGGACCAACCCGGTCCCCCCTGCATGCTGTTGATCC
65 TCGGTCGGAGAGGTAGAATGCACAAGCCGGGGA-CAGCCCGATCCCCCCTACGTGCTGTCGATCC
* ** * * * * *
14866766 TACTGCCACAACCCTCGGT-CTAGTCTGATCTTAAAATGGGAATGAACTCCATATGCCTAAGTAA
129 TACTGTCGTAACCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* * ** *
14866830 ACCCACA-AAATGAGCGTACGGGTGCTCGA-CCGACCGAAGAGGCATAATGCACAAGCCGAGGAT
193 ACCCA-AGAAACGAGCGTTCGGGCACT-GAGCCGACCG-AGAGGCATAATGCACAAGCCGGGGAT
** * * *
14866893 C-AATCTGGTCACCCTCTGCGTGCTGTCGATCCCACTACCGATTCTACTGTGACAACCCTTGGTC
255 CGGCTC-GGTC-CCCTCTGCGTACTGTCGATCCCGCT---G---C--C----ACAACCCTCGGTC
* *
14866957 TGGCTGGGGCTTAGACATGGAATGAACTCCATATTCCTAAGCCAACCCATGAAACGAGCGTATGG
306 TGGCTGGGGCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTACGG
* * * * *
14867022 GGGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCAGCGTGC
370 GCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTA-CGTGC
* *
14867087 TACCGATCCTGCTACTGGTCATGCTACTGCAAACCTCGGT-TCGATCCAATCTTAGACTGGGAAT
434 TACCGA---T-CT--T-G-C-TGC--C--AAAACCTCGGTCT-GATCCGATCTTAGACTGGGAAT
*
14867151 GAACTCCATATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATG
485 GAACTCCATATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATG
* * *
14867216 CGGGCGCTCAGCTGGCCGAAGAGGCAGAATGCACAACCTGGGAACCGACCCGGTCCCCCCTACGT
550 CAGGCGCTCAGCTGGCCGAAGAGGCAGAATGCACAACCTAGGAACCGACCCGATCCCCCCTACGT
* * * * *
14867281 GCTATCAATCCTGCTACCGTAACCCTTGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
615 GCTATCAATCCTGCTACCGCAACCATCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCATAT
* * ** * *
14867346 GCCTAAGTCAACTCACTAAATGAGCGTGCGGGCACTGAGCCGATCGGAGAGGCATAATCCGCAAG
680 GCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATCCGCAAG
* * * * * * * ** * **
14867411 TCGGGGATCAGCCCGATGCTCCCCTGTGTGCTACCGATCTCGTTGCCACAACCCTCAGTCCGGTT
745 CCGGAGAACAGCCCGATGCTCCCCTCTGAGCTACCAATCCCGCAGCCACAACACTCAGTCCGACT
14867476 AGG
810 AGG
* * * * * * ** *
14867479 GCTTAGACATGGAGTTAACTCCCTATGCCACAACCCTCAGCTGATCGGAGCGACAGAATGC-TCA
1 GCTTAGACAT-GAATGAACTCCATATGCC-TAA-GC-CAACCCAT--GA--AAC-G-A-GCGT--
* * * ** * *
14867543 AGCCGGGGATTGAGC-CAGTTGGCCGGAGAGGTAAAATGTGCAAGCCAGGGACCGACCCGATCAC
53 A--C-GGG--T--GCTCAGTCGGTCGGAGAGGTAGAATGCACAAGCCGGGGACAG-CCCGATC-C
* * * * *
14867607 CCCGTACGTGCTATCGATCCTACTGTCGCT-ACCCTC-AGTCTGCTCTGATCTGAGACTGGGAAT
109 CCCCTACGTGCTGTCGATCCTACTGTCG-TAACCCTCGA-TCCGATCTGATCTTAGACTGGGAAT
* * * * * *
14867670 GAACTTCGA-ATGCCTAAGTCAACCCACGCAACGAGTGTTCGGGCACTGAGCCTGTCGGAGAGGC
172 GAAC-TCCATATGCCTAAGTCAACCCAAGAAACGAGCGTTCGGGCACTGAGCC-GACCGAGAGGC
** * * * * ** *
14867734 ATAATGTGCAAGCTGGGGATCGGCTTGGACCCCCTCTACGTACTACCGATCCCGTTGCCACAACC
235 ATAATGCACAAGCCGGGGATCGGCTCGG-TCCCCTCTGCGTACTGTCGATCCCGCTGCCACAACC
* * * *
14867799 CTCGGT-TCGGTTGGGGCTTAGAAATGGAATGAACTCCCTATG-CTAAAGCCAACCCACGAAACA
299 CTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACT-CCTATGCCT-AAGCCAACCCATGAAACG
* * * * * * * * *
14867862 AGCGTACGGGCACTCAGTCGGCCGAAGTGGCAGAATGTGTAAGCCGGGGGTCAGCCCGATCCCCC
361 AGCGTACGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
* ** ** * * ** * * *
14867927 ATGTGTGCTGTCGATCCTGCTATCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACT
426 CTACGTGCTACCGATCTTGCT-GCCAAAACCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
** * * *
14867992 CTGTATGCTTAGAC-TAGG-GTTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAG
490 CCATATGCTTAGACAT-GGAATT-AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAG
* * * * * *
14868055 GCGCTCA-ATCGGCC-AGAGAGGCATAATGCGCAAGCTAAGG-ATCGGCCCGATCCCCCCTACGT
553 GCGCTCAGCT-GGCCGA-AGAGGCAGAATGCACAACCT-AGGAACCGACCCGATCCCCCCTACGT
* * * * * * *
14868117 GCTGTCGATCCTGCTACTGCAACCATCGGTCCGGTCTGATTTTAGATTGGGAATGAACTGCATAT
615 GCTATCAATCCTGCTACCGCAACCATCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCATAT
*
14868182 GCCTATA-TCAACCCACGAAACAAGCGTGCGGGCACTGAGCCGACCGAAGTGGCATAA-CGCGCA
680 GCCTA-AGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATC-CGCA
* * * *
14868245 AGCCGGAGAACCGCTCGGT-C-CCCCTCTGCAAGCTACTAATCCCGCAGCCACAACACTC-GATC
743 AGCCGGAGAACAGCCCGATGCTCCCCTCTG--AGCTACCAATCCCGCAGCCACAACACTCAG-TC
* *
14868307 TGACTGGG
805 CGACTAGG
*
14868315 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATG-AATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
*
14868380 TCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCACCCTACGTGCTGTCGATC
65 TCGGTCGGAGAGGTAGAATGCACAAGCCGGGGA-CAGCCCGATCCC-CCCTACGTGCTGTCGATC
* *
14868445 CTGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
128 CTACTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* *
14868510 ACCCAAGAAACGAGCGTTTGGGCACTGAGCCGACCAGAGAGGTATAATGCACAAGCCGGGGATCG
193 ACCCAAGAAACGAGCGTTCGGGCACTGAGCCGACC-GAGAGGCATAATGCACAAGCCGGGGATCG
* * *
14868575 GCTCAGTCCCCTTCTGCGTCCTGTCGATCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGA
257 GCTCGGTCCCC-TCTGCGTACTGTCGATCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGA
* * ** *
14868640 CATGGAATGAACTCTCGATGCCTAAGCCAACCCATAAAACG-GACGTACGAACGCTCCGCCAGCC
321 CATGGAATGAACTC-CTATGCCTAAGCCAACCCATGAAACGAG-CGTACGGGCGCTCAGCCAGCC
* * *
14868704 GGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCTACGTGCTACCGATCTTGCTGC
384 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCTTGCTGC
*
14868769 CAAAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCAT
449 CAAAACC-TCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCAT
14868815 CTGCCTAAGT
Statistics
Matches: 1044, Mismatches: 231, Indels: 146
0.73 0.16 0.10
Matches are distributed among these distances:
818 21 0.02
819 330 0.32
820 7 0.01
822 3 0.00
823 1 0.00
825 1 0.00
826 2 0.00
827 2 0.00
828 1 0.00
829 2 0.00
831 2 0.00
833 5 0.00
834 8 0.01
835 11 0.01
836 301 0.29
837 3 0.00
839 1 0.00
840 2 0.00
841 1 0.00
842 2 0.00
843 24 0.02
844 3 0.00
845 2 0.00
846 4 0.00
848 13 0.01
849 106 0.10
850 4 0.00
851 1 0.00
852 2 0.00
853 3 0.00
855 1 0.00
856 1 0.00
857 3 0.00
858 1 0.00
859 1 0.00
860 34 0.03
861 127 0.12
862 8 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (812 bp):
GCTTAGACATGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGT
CGGTCGGAGAGGTAGAATGCACAAGCCGGGGACAGCCCGATCCCCCCTACGTGCTGTCGATCCTA
CTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
CAAGAAACGAGCGTTCGGGCACTGAGCCGACCGAGAGGCATAATGCACAAGCCGGGGATCGGCTC
GGTCCCCTCTGCGTACTGTCGATCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGG
AATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCAGCCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCTTGCTGCCAAAACC
TCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATTAACTCCGTA
TGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAGCTGGCCGAAGAGGCAGAATGCACAA
CCTAGGAACCGACCCGATCCCCCCTACGTGCTATCAATCCTGCTACCGCAACCATCGGTCCGGTC
TAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACT
GAGCCGACCGAAGAGGCATAATCCGCAAGCCGGAGAACAGCCCGATGCTCCCCTCTGAGCTACCA
ATCCCGCAGCCACAACACTCAGTCCGACTAGG
Found at i:14868925 original size:317 final size:315
Alignment explanation
Indices: 14868012--14868928 Score: 948
Period size: 318 Copynumber: 2.9 Consensus size: 315
14868002 AGACTAGGGT
* ** * * * ** * *
14868012 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-AGGCGCTCAATCGGCCAGAGAGG
1 TGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGA-ACGCTCAGCCAGCCGGAGAGG
* ** * *
14868076 CATAATGCGCAAGCTAAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACTGCAACC
65 CAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGAAACC
* * * * *
14868141 ATCGGTCCGGTCTGATTTTAGATTGGGAATGAACTGCATATGCCTATA-TCAACCCACGAAACAA
130 ATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTA-AGTCAACCCACAAAACGA
* * * * *
14868205 GCGTGCGGGCACTGAGCCGACCGAAGTGGCATAACGCGCAAGCCGGAGAACCGCTCGGTCCCCCT
194 GCGTGCGGGCACTGAGCCGACAG-AGAGGCATAATGCGCAAGCCGGAG-ATCGCTCAGTCCCCCT
** * * *
14868270 CTGCAAGCT-ACTAATCCCGCAGCCACAACACTCGATCTGACTGGGGCTTAGACATGAAA
257 CTGCGTGCTGTC-AATCCCGCTGCCACAACACTCGATCTGACTAGGGCTTAGACATGAAA
* *** * * *
14868329 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGTCGGTCGGAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGAACGCTCAGCCAGCCGGAGAGGC
* * * * *
14868394 AGAATGCACAAGCCGGGGATCAGCCCGATCCCACCCTACGTGCTGTCGATCCTGCTATCGTAACC
66 AGAATGCGCAAGCTGGGGATCGGCCCGATCCC-CCCTACGTGCTGTCGATCCTGCTACCGAAACC
* * *
14868459 CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA-AGAAACGA
130 ATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACA-AAACGA
** * * * *
14868523 GCGTTTGGGCACTGAGCCGACCAGAGAGGTATAATGCACAAGCCGGGGATCGGCTCAGTCCCCTT
194 GCGTGCGGGCACTGAGCCGA-CAGAGAGGCATAATGCGCAAGCCGGAGATC-GCTCAGTCCCCCT
* * * * * *
14868588 CTGCGTCCTGTCGATCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAA
257 CTGCGTGCTGTCAATCCCGCTGCCACAACACTCGATCTGACTAGGGCTTAGACATGAAA
*
14868647 TGAACTCTCG-ATGCCTAAGCCAACCCATAAAACG-GACGTACGAACGCTCCGCCAGCCGGAGAG
1 TGAACTC-CGTATGCCTAAGCCAACCCATAAAACGAG-CGTACGAACGCTCAGCCAGCCGGAGAG
* * ** * * *
14868710 GTAGAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCTACGTGCTACCGATCTTGCTGCCAAAAC
64 GCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGAAAC
* * * * *
14868775 CTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATCTGCCTAAGTCAACCCACAAAATGA
129 CATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGA
* * ** * * *
14868840 GCATGCAGGTGCTTAGCCGATCAGAGAGGCATAATGTGCAAGCCGGAGATCAGC-CTAATCCCCC
194 GCGTGCGGGCACTGAGCCGA-CAGAGAGGCATAATGCGCAAGCCGGAGATC-GCTC-AGTCCCCC
**
14868904 TCTATGTGCTGTCAATCCCGCTGCC
256 TCTGCGTGCTGTCAATCCCGCTGCC
14868929 GATCTTGCTG
Statistics
Matches: 495, Mismatches: 94, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
316 1 0.00
317 233 0.47
318 256 0.52
319 5 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (315 bp):
TGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGAACGCTCAGCCAGCCGGAGAGGC
AGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGAAACCA
TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGC
GTGCGGGCACTGAGCCGACAGAGAGGCATAATGCGCAAGCCGGAGATCGCTCAGTCCCCCTCTGC
GTGCTGTCAATCCCGCTGCCACAACACTCGATCTGACTAGGGCTTAGACATGAAA
Found at i:14869669 original size:26 final size:26
Alignment explanation
Indices: 14869633--14869688 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14869623 CCAATCCGAT
**
14869633 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
14869659 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
14869685 CTTA
1 CTTA
14869689 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:14870418 original size:26 final size:26
Alignment explanation
Indices: 14870382--14870434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14870372 CTAGTTCAAT
14870382 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
14870408 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14870434 C
1 C
14870435 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14871567 original size:26 final size:26
Alignment explanation
Indices: 14871538--14871590 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14871528 CTGATCCGAT
*
14871538 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14871564 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14871590 C
1 C
14871591 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14871957 original size:26 final size:26
Alignment explanation
Indices: 14871905--14871957 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14871895 CTGGTTCGAT
*
14871905 CTTAGACTGAGAATGAACTCTGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
*
14871931 CTTAGACTTG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGCATG
14871957 C
1 C
14871958 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:14872436 original size:26 final size:26
Alignment explanation
Indices: 14872407--14872459 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14872397 CCAGTCTGAT
14872407 CTTAGACCGAGAATGAACTCCATATG
1 CTTAGACCGAGAATGAACTCCATATG
* * * *
14872433 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCATATG
14872459 C
1 C
14872460 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCATATG
Found at i:14873167 original size:26 final size:26
Alignment explanation
Indices: 14873129--14873181 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14873119 GGCTCAAAAT
14873129 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14873155 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14873181 C
1 C
14873182 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14873656 original size:158 final size:156
Alignment explanation
Indices: 14873155--14873656 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 156
14873145 ACTCCGTATG
* * * * * *
14873155 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGC-ACTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAACGTACGGGCGA-TCAA
* * *
14873219 CCGACCAAAGAGGTAGAATGCGCAAGTCGGGTATCGGCCCGATCCCC-CTTGCGTGCTGTCGATC
64 CCGACCGAAGAGGCAGAATGCGCAAGACGGG-ATCGGCCCGATCCCCTC-TGCGTGCTGTCGATC
* *
14873283 CTACTACCGCAACCCTCGGTCCGATCGGAT
127 CTACTGCCGCAACCCTCGGTCCGAACGGAT
* * * * * * * *
14873313 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACGCACGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAACGTACGGGCGATCAAC
* * * *
14873378 CGACCGAAGAGGCATAATGCGCAAGACGTGGATTGGCCCGATCCCCCTCTACGTGCTGTCGGTGC
65 CGACCGAAGAGGCAGAATGCGCAAGACG-GGATCGGCCCGAT-CCCCTCTGCGTGCTGTCGAT-C
* * * **
14873443 C-GCTGCCACAACCCTCGGTCC-AGCTGGGG
127 CTACTGCCGCAACCCTCGGTCCGAAC-GGAT
* * * ** * * *
14873472 CTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCTTAAAATGGACGTATGGGCGATCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAACGTACGGGCGATCAAC
* * * * *
14873537 CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCTCTGCGTGCTGTCGATCCT
65 CGACCGAAGAGGCAGAATGCGCAAGAC-GGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCT
* * *
14873602 ATTGCCGCAACCCTCGATCCGAACCGAT
129 ACTGCCGCAACCCTCGGTCCGAACGGAT
*
14873630 CTTAGACTGGTAATGAATTCCGTATGC
1 CTTAGACTGG-AATGAACTCCGTATGC
14873657 TTAGATTTGG
Statistics
Matches: 276, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 146 0.53
159 119 0.43
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAACGTACGGGCGATCAACC
GACCGAAGAGGCAGAATGCGCAAGACGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTAC
TGCCGCAACCCTCGGTCCGAACGGAT
Found at i:14874181 original size:158 final size:155
Alignment explanation
Indices: 14873883--14874382 Score: 572
Period size: 158 Copynumber: 3.2 Consensus size: 155
14873873 CTCCATATGA
* * *
14873883 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCTGCC
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * * *
14873948 AGTC-AGAGAGGCAGAATACGCAAGTCGGGGATTGGCCTGGTCCCCCCTGCATGCTGTCTATCCT
65 GGTCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTG--TGCTGTCGATCCT
* *
14874012 GCTACCGCAACCCTCGGTCCGGTCTGATC
127 GCTGCCGCAACCCTCGGTCCAGTCTGATC
* * *
14874041 TTACACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCC
1 TTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * *
14874106 GGTCGAAAAGGCATAATGCGCAAGCCGAGGATCGAGCCCGATCCCCCTCTGTGCTGTCGGTCCTG
65 GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCG-GCCCGGTCCCCC-CTGTGCTGTCGATCCTG
* * * **
14874171 CTGCCACAACCCTCGGT-CTGACTGGGGC
128 CTGCCGCAACCCTCGGTCCAGTCT-GATC
* * * *
14874199 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGTC
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
** *
14874264 GACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
65 GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCT--GTGCTGTCGATCCTG
* *
14874329 CTGTCGCAACCCTCAGTCCAGTCTGATC
128 CTGCCGCAACCCTCGGTCCAGTCTGATC
*
14874357 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACT-GGAATGAACTCCGTATGC
14874383 TTAAACTGGG
Statistics
Matches: 286, Mismatches: 46, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
156 2 0.01
157 19 0.07
158 244 0.85
159 18 0.06
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (155 bp):
TTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
GTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGTGCTGTCGATCCTGCTG
CCGCAACCCTCGGTCCAGTCTGATC
Found at i:14874385 original size:26 final size:26
Alignment explanation
Indices: 14874356--14874408 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14874346 CCAGTCTGAT
* *
14874356 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
**
14874382 CTTAAACTGGGGGTGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14874408 C
1 C
14874409 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14875456 original size:26 final size:26
Alignment explanation
Indices: 14875420--14875472 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14875410 CTGGTCTGAT
14875420 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14875446 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14875472 C
1 C
14875473 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14875868 original size:184 final size:184
Alignment explanation
Indices: 14875629--14875998 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 184
14875619 TCCAGCTAGG
* ** * *
14875629 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCCACCCATTAAATGAGCGTGCGGGTGCTC-G
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *** *
14875693 ATCGATCGGAGAGGCAGAATGCAAAAACCAGGGATGGGCCCGGTCCCCCCTGCGTGCTACCGATC
66 -CCGACCGGAGAGGCAAAATGCAAAAACCAGGGATCAACCCGGTCCCCCCTGCATGCTACCGATC
* *
14875758 CTGCTACTGCAACCCTCAATCCAATCCAATCTTAGA-TAGGGAATGAACTCCGTAT
130 CTGCTACTGCAACCCACAATCCAATCCAACCTTAGACTA-GGAATGAACTCCGTAT
* *
14875813 GCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14875878 CCGACCGGAGAGGCAAAATGCACAAGCCAGGTATCAACTCGGTCCTCCCTGCATGCTATCGATCT
66 CCGACCGGAGAGGCAAAATGCAAAAACCAGGGATCAACCCGGTCCCCCCTGCATGCTACCGATCC
* * * *
14875943 TGCTGCTGCAACCCACTATCCGATCCGACCTTAGACTAGGAATGAACTCCGTAT
131 TGCTACTGCAACCCACAATCCAATCCAACCTTAGACTAGGAATGAACTCCGTAT
14875997 GC
1 GC
14875999 CCAAGTCAAC
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 154 0.98
185 3 0.02
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCAAAAACCAGGGATCAACCCGGTCCCCCCTGCATGCTACCGATCC
TGCTACTGCAACCCACAATCCAATCCAACCTTAGACTAGGAATGAACTCCGTAT
Found at i:14876334 original size:25 final size:26
Alignment explanation
Indices: 14876289--14876340 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14876279 CTGATCTGAT
14876289 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14876315 CTTAGACTG-GGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14876340 C
1 C
14876341 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14878277 original size:25 final size:26
Alignment explanation
Indices: 14878232--14878283 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14878222 CTGATCTGAT
14878232 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14878258 CTTAGACTG-GGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14878283 C
1 C
14878284 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14879331 original size:26 final size:26
Alignment explanation
Indices: 14879295--14879347 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14879285 CTGGTCTGAT
14879295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14879321 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14879347 C
1 C
14879348 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14879829 original size:184 final size:184
Alignment explanation
Indices: 14879504--14879873 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 184
14879494 TCCAGCTAGG
* ** * *
14879504 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCCACCCATTAAATGAGCGTGCGGGTGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCGA
* * * *** *
14879569 TCGATCGGAGAGGCAGAATGCAAAAACCAGGGATGGGCCCGGTCCCCCCTGCGTGCTACCGATCC
66 CCGACCGGAGAGGCAAAATGCAAAAACCAGGGATCAACCCGGTCCCCCCTGCATGCTACCGATCC
* *
14879634 TGCTACTGCAACCCTCAATCCAATCCAATCTTAGA-TAGGGAATGAACTCCGTAT
131 TGCTACTGCAACCCACAATCCAATCCAACCTTAGACTA-GGAATGAACTCCGTAT
* *
14879688 GCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTC-A
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCGA
* * * * * *
14879752 GCCGACCGGAGAGGCAAAATGCACAAGCCAGGTATCAACTCGGTCCTCCCTGCATGCTATCGATC
66 -CCGACCGGAGAGGCAAAATGCAAAAACCAGGGATCAACCCGGTCCCCCCTGCATGCTACCGATC
* * * * *
14879817 TTGCTGCTGCAACCCACTATCCGATCCGACCTTAGACTAGGAATGAACTCCGTAT
130 CTGCTACTGCAACCCACAATCCAATCCAACCTTAGACTAGGAATGAACTCCGTAT
14879872 GC
1 GC
14879874 CCAAGTCAAC
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 1 0.01
184 154 0.98
185 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCGA
CCGACCGGAGAGGCAAAATGCAAAAACCAGGGATCAACCCGGTCCCCCCTGCATGCTACCGATCC
TGCTACTGCAACCCACAATCCAATCCAACCTTAGACTAGGAATGAACTCCGTAT
Found at i:14880210 original size:25 final size:26
Alignment explanation
Indices: 14880164--14880215 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
14880154 CCGATCCGAT
14880164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14880190 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14880215 C
1 C
14880216 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14887176 original size:159 final size:159
Alignment explanation
Indices: 14886812--14887252 Score: 440
Period size: 159 Copynumber: 2.8 Consensus size: 159
14886802 TGAACTCTGT
* * * *
14886812 ATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTC
* **** * * * ** *
14886877 AGCTGATTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTTGTGTGCTGTTGAT
66 AGCCGACCAAAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
* * **
14886942 CCTGCTGCCGCAACCCTCAGTCTGGTCTG
131 CCCGCTGCCACAACCCTCAGTCTGAACTG
* * *
14886971 AT-CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAATCCATGAAACAAGCGTGCGGGCGCT
1 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCT
* *
14887034 GAGCCGACCAAAGAGGCATAATGCGCAAGCAGGGGATCGGCCCGATCCCCCACTACGTGCTGTCG
65 CAGCCGACCAAAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCC-CTACGTGCTGTCG
* *
14887099 CTCCCGCTGCCACAACCCTCGGTCT-AACTG
129 ATCCCGCTGCCACAACCCTCAGTCTGAACTG
* * * *** * * *
14887129 GTGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACAGGTGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTC
* * * * * * * *
14887194 AACCGGCCAGAGTGGCAGAATGCACAAGCCA-AGGATCGGCCCGGTCCCCCATACGTGCT
66 AGCCGACCAAAGAGGCAGAATGCGCAAG-CAGGGGATCGGCCCGATCCCCCCTACGTGCT
14887253 ACCAATCTTG
Statistics
Matches: 229, Mismatches: 48, Indels: 11
0.80 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 106 0.46
159 119 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTC
AGCCGACCAAAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
CCCGCTGCCACAACCCTCAGTCTGAACTG
Found at i:14887319 original size:26 final size:27
Alignment explanation
Indices: 14887290--14887343 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
14887280 CCGGTTCGAT
*
14887290 CTTAGACTGGGAATGAACTTC-GTATG
1 CTTAGACTGGGAATGAACTCCTGTATG
* *
14887316 CTTAGATTGGGGATGAACTCCTGTATG
1 CTTAGACTGGGAATGAACTCCTGTATG
14887343 C
1 C
14887344 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCTGTATG
Found at i:14887707 original size:26 final size:26
Alignment explanation
Indices: 14887669--14887721 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14887659 TCGATCCTAT
14887669 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14887695 CTTAGACAT-GGAATGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14887721 C
1 C
14887722 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14888091 original size:159 final size:158
Alignment explanation
Indices: 14887694--14888123 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 158
14887684 AACTCCATAT
* * * **
14887694 GCTTAGACATGGAATGACCTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
14887759 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCC-GGGATCAGCCCGATCCCCCCTTACGTGCTGCCGATC
** * *
14887824 CTGCTACCGCAACCCTCAGCCCGGTCCGA
130 CCACTACCACAACCCTCAGCCCGGTCAGA
* * * * * ** * *
14887853 TCTTAGAC-TGGGAATGAATTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGAACTCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* ** * * * *
14887917 TCCGGTCGGAAAGGCATAATGTGCAAGCCAGGGATCAGCCCGAT-CCCCCTCTGCGTGCTGCC-A
65 GCCGACCGGAGAGGCAGAATGCGCAAGCC-GGGATCAGCCCGATCCCCCCT-TACGTGCTGCCGA
* * * * *
14887980 GTCCCACTGCCACAACCCTCGGTCTGG-CTAGG
128 -TCCCACTACCACAACCCTCAGCCCGGTC-AGA
* *
14888012 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCACTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCA
14888076 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCAGCCCGATCCCC
14888124 TCAGCGTACT
Statistics
Matches: 214, Mismatches: 49, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
158 11 0.05
159 199 0.93
160 4 0.02
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCCGATCCCCCCTTACGTGCTGCCGATCC
CACTACCACAACCCTCAGCCCGGTCAGA
Found at i:14888504 original size:159 final size:159
Alignment explanation
Indices: 14888224--14888511 Score: 346
Period size: 159 Copynumber: 1.8 Consensus size: 159
14888214 ACAAGGAATG
* * * *
14888224 AACTCTGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGAGAGCTTAGCCGACCAGAGAGGCAA
1 AACTCCGTATGCCTAAGGCAACCCACGAAACAAGCGTACGAGAGCTGAGCCGACCAGAGAGGCAA
* ** * *** *
14888289 AATGCGCAAGCTGGGGATCGACCTGGTCCCCTCCTGCGTGCTATCGATCTTGCTGCCGCAACCCC
66 AATACGCAAGCCAGGGATCGACCTGATCCCCTCCTGCGTGCTATCGATCCCACTGCCACAACCCC
14888354 CGATCCAATCCGATCTTAGACTGGTAATA
131 CGATCCAATCCGATCTTAGACTGGTAATA
* * * * * *
14888383 AACTCCGTATGCCTAAGTCAAGCCATGAAACAAGCGTACGGGCA-CTGAGCTGGCCAGAGAGGCA
1 AACTCCGTATGCCTAAGGCAACCCACGAAACAAGCGTACGAG-AGCTGAGCCGACCAGAGAGGCA
* * * *
14888447 TAATACGCAAGCCAGGGATCGATCTGATCCCC-CTCTGCGTGCTGTCGGTCCCACTGCCACAACC
65 AAATACGCAAGCCAGGGATCGACCTGATCCCCTC-CTGCGTGCTATCGATCCCACTGCCACAACC
14888511 C
129 C
14888512 TCGGTCTGGC
Statistics
Matches: 105, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 1 0.01
159 103 0.98
160 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (159 bp):
AACTCCGTATGCCTAAGGCAACCCACGAAACAAGCGTACGAGAGCTGAGCCGACCAGAGAGGCAA
AATACGCAAGCCAGGGATCGACCTGATCCCCTCCTGCGTGCTATCGATCCCACTGCCACAACCCC
CGATCCAATCCGATCTTAGACTGGTAATA
Found at i:14888535 original size:514 final size:513
Alignment explanation
Indices: 14887399--14888660 Score: 1417
Period size: 514 Copynumber: 2.4 Consensus size: 513
14887389 AGAGGCCGAT
* * *
14887399 CAGAGAGGCATAATACGTAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGACCCCGTT
1 CAGAAAGGCATAATACGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGT------CG--
* * * * * * *
14887464 GTCGGTCCTGCTGGCACAACCCTCGGTCCGACT-GGGTTTAGACATGGAATGAATTCCGTATGCC
58 GTC---CC-ACTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCC
* * * * *
14887528 TAAGCCAA-CCATGAAACGAGTGTGTGGGTGCTCAACCGATCGGAGAGGTAGAATGCGCAAGCCG
119 TAAGCCAACCCATGAAACG-GCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG
* * * * * * * ** *
14887592 AGGATAGGCCTGGTCCCCCCTGTGTGCTATCGATCTTGCTGTTAGTCTTACCGCCGCAACCATCG
183 AGGATAGGCCCGATCCCCCCAGCGTACTATCGATCCTACTACTAGTCCTACCGCCGCAACCATCG
* * * *
14887657 ATTCGATCCTATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGACCTCCGTATGC
248 ATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATGC
* * * * * *
14887722 CTAAACCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCC
313 CTAAACCAACCCACGAAACGAGCGTGCGAGAGCTCAGCCGACCAGAGAGGCAAAATGCGCAAGCC
* * **
14887787 GGGGATCAGCCCGGTCCCCCCTTACGTGCTGTCGATCCTGCTACCGCAACCCTCAGCCCGGTCCG
378 GGGGATCAGCCCGGTCCCCCCTTACGTGCTATCGATCCTGCTACCGCAACCCCCAGCCCAATCCG
* * * * *
14887852 ATCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGAACTCTGA
443 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATACGAACACTGA
* *
14887917 TCCGGT
508 GCCGGC
* ** * *
14887923 CGGAAAGGCATAATGTGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAGTCCCACT
1 CAGAAAGGCATAATACGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACT
14887988 GCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
66 GCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* ** *
14888053 CGAAACAGGCGTGCGGGCACTTAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCA-GCCC
131 TGAAAC-GGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGAT-AGGCCC
* * * * * * *
14888117 GATCCCCTCAGCGTACTGTTGATCCTACTACTGGTCCTGCTGCCGCAACCCTCGATCCGATCCGA
194 GATCCCCCCAGCGTACTATCGATCCTACTACTAGTCCTACCGCCGCAACCATCGATCCGATCCGA
* * * **
14888182 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGGCAACC
259 TCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAACCAACC
* *
14888247 CACGAAACGAGCGTGCGAGAGCTTAGCCGACCAGAGAGGCAAAATGCGCAAGCTGGGGATC-GAC
324 CACGAAACGAGCGTGCGAGAGCTCAGCCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCAG-C
* * * * *
14888311 CTGGTCCCCTCC-TGCGTGCTATCGATCTTGCTGCCGCAACCCCC-GATCCAATCCGATCTTAGA
388 CCGGTCCCC-CCTTACGTGCTATCGATCCTGCTACCGCAACCCCCAG-CCCAATCCGATCTTAGA
* * ** * ** *
14888374 CTGGTAATAAACTCCGTATGCCTAAGTCAAGCCATGAAACAAGCGTACGGGCACTGAGCTGGC
451 CTGGGAATAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATACGAACACTGAGCCGGC
* * *
14888437 CAGAGAGGCATAATACGCAAGCCAGGGATC-GATCTGATCCCCCTCTGCGTGCTGTCGGTCCCAC
1 CAGAAAGGCATAATACGCAAGCCAGGGATCAG-CCCGATCCCCCTCTGCGTGCTGTCGGTCCCAC
14888501 TGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
65 TGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * *
14888566 ATGAAACGGGCGTGCGAGTGCTCAGTCGGCCGGAAAGGCAGAATGCGCAAGCC-AGGGATTGGTC
130 ATGAAAC-GGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATAGGCC
* * *
14888630 C-AGTCCCCCCTGCGTGCTGTCGATCCTACTA
193 CGA-TCCCCCCAGCGTACTATCGATCCTACTA
14888661 TTGCAACCCT
Statistics
Matches: 622, Mismatches: 105, Indels: 32
0.82 0.14 0.04
Matches are distributed among these distances:
512 20 0.03
513 43 0.07
514 503 0.81
515 4 0.01
516 3 0.00
518 1 0.00
524 48 0.08
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (513 bp):
CAGAAAGGCATAATACGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACT
GCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
TGAAACGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATAGGCCCGA
TCCCCCCAGCGTACTATCGATCCTACTACTAGTCCTACCGCCGCAACCATCGATCCGATCCGATC
TTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAACCAACCCA
CGAAACGAGCGTGCGAGAGCTCAGCCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCG
GTCCCCCCTTACGTGCTATCGATCCTGCTACCGCAACCCCCAGCCCAATCCGATCTTAGACTGGG
AATAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATACGAACACTGAGCCGGC
Found at i:14889447 original size:26 final size:26
Alignment explanation
Indices: 14889409--14889461 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14889399 GGCTTAAAAT
14889409 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14889435 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14889461 C
1 C
14889462 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14890307 original size:26 final size:26
Alignment explanation
Indices: 14890278--14890330 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14890268 CCGATCTGAT
14890278 CTTAGAC-TGGGAATGAAATCTATATG
1 CTTAGACAT-GGAATGAAATCTATATG
* *
14890304 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAAATCTATATG
14890330 C
1 C
14890331 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCTATATG
Found at i:14890605 original size:159 final size:159
Alignment explanation
Indices: 14890303--14890737 Score: 428
Period size: 159 Copynumber: 2.7 Consensus size: 159
14890293 AAATCTATAT
* * **
14890303 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTAAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAG
* * *
14890368 CCAGCCGGAGAGGCAGAATGTGCAAGCGAGGGATCGACCCGATCCCTCTCTGCGTGCTGTCAATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCTCTGCATGCTGTCAATC
* * * *
14890433 CTATTACCCCAACCCTCGGTCTGA-TCCAA
131 CCACTACCACAACCCTCGGTCCGACT-CAA
* * ** *
14890462 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCA
* * * * * *
14890526 GCCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCTTTTTGCATGCTG-CAGG
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCTCTGCATGCTGTCA-A
* * * ***
14890590 TCCCGCTGCCACAACCCTGGGTCCGACTGGG
129 TCCCACTACCACAACCCTCGGTCCGACTCAA
* * *** ** **
14890621 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAG
* * * * * *
14890686 CCGGCCAGAAAGGCAGAATGCGCAAGTCGGGGATCGACCTGATCCCTC-CTGC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCTCTGC
14890738 GTGCAGCCGA
Statistics
Matches: 223, Mismatches: 49, Indels: 9
0.79 0.17 0.03
Matches are distributed among these distances:
158 6 0.03
159 215 0.96
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCTCTCTGCATGCTGTCAATC
CCACTACCACAACCCTCGGTCCGACTCAA
Found at i:14891538 original size:26 final size:26
Alignment explanation
Indices: 14891500--14891552 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14891490 GGCTCAAAAT
*
14891500 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14891526 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14891552 C
1 C
14891553 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14892025 original size:158 final size:156
Alignment explanation
Indices: 14891526--14892017 Score: 503
Period size: 158 Copynumber: 3.1 Consensus size: 156
14891516 ACTTCGTATG
*
14891526 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGC-GGCGCTCAGC
** * * * * * *
14891591 TAGCCGAAGAGGTAGAATGCGCAAGCTGGGGACCGGCCCGAT-CCCCCTACGTGTTGTCGATCCC
65 CGGCCG-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCC
* *
14891655 GCTGTCGCAACCTTCAGT-TCAGTCTGAT
129 TCTGTCGCAACCCTCAGTCT-AGTCTGAT
* * * * * * * *
14891683 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGGCCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGCG-CTCAG
* * * *
14891747 CCGGTCGGAGAGGCA-AATGCGCAAGCTGGGGATTGACCCGGTCCCCCTCTGCGTGCTGCCGGTC
64 CCGG-CCGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATC
* * * **
14891811 CCGT-TGCCACAACCCTCAGTCCAG-CTGGGG
127 CC-TCTGTCGCAACCCTCAGTCTAGTCT-GAT
* *
14891841 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGACGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGG-CGCTCAGC
* * ** * *
14891906 CGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCGGTTCGGTCCCCCCTGCGTGCTACCGATCCT
65 CGGCC-GAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCC
14891971 TCTGTCGCAACCCTCAGTCTAGTCTGAT
129 TCTGTCGCAACCCTCAGTCTAGTCTGAT
14891999 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
14892018 TTGTATGCTT
Statistics
Matches: 267, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 27 0.10
157 66 0.25
158 144 0.54
159 30 0.11
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGCGCTCAGCC
GGCCGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCCTC
TGTCGCAACCCTCAGTCTAGTCTGAT
Found at i:14892051 original size:26 final size:26
Alignment explanation
Indices: 14891999--14892051 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14891989 CTAGTCTGAT
** *
14891999 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
14892025 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
14892051 C
1 C
14892052 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14893362 original size:881 final size:876
Alignment explanation
Indices: 14891498--14893848 Score: 2541
Period size: 881 Copynumber: 2.7 Consensus size: 876
14891488 GTGGCTCAAA
*
14891498 ATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACATGGAATGAACT-TGTATGCCTAAGCCAA
* * * *
14891562 CCCATGAAACGAGCATGCGGGCGCTCAACTA-GCCGAAGAGGTAGAATGCGCAAGCTGGGGACCG
64 CCCATGAAACGAGCATGCGGGCGCTCAGC-AGGCCGGAGAGGCAGAATGC-AAAGCTGGGGACCG
* * * ** * * * * *
14891626 GCCCGATCCCCCTACGTGTTGTCGATCCCGCTGTCGCAACCTTCAGT-TCAGTCTGATCTTAGAC
127 ACCCGATCCCCCTACATGCTGTCGATCATGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGAC
* *
14891690 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGGCCTGAGCCGGTCGG
191 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTACGGAG-CTGAGCCGGTCGG
* * *
14891755 AGAGGCA-AATGCGCAAGCTGGGGAT-TGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGTTGC
255 AGAGGCATAATGCGCAAGCTGGGGATCAG-CCCGGTCCCCCTCTGCGTGCTGCCGATCCCATTGC
* * *
14891818 CACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
319 CACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* ** * * * *
14891883 AAACGGGCATGCGGACGCTCAGCCGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCGG-TTCGG
384 AAACGGGCATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTT-GA
* * * * * **
14891947 TCCCCCCTGCGTGCTACCGATCCTTCTGTCGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAA
448 TTCCCCCTGCGTGCTGCTGATCCTGCTG-CGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAA
* *
14892012 TGAACTTTGTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCATTAAACGAGCGT
512 TGAACTTCGTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGT
* * * *
14892077 GCGGCGCTCAGCCAGCCAAAGAGGTCGACTGGAAAGGTATAATGCGCAAGCCGAGGATCAGCCCG
577 GCGGCGCTCAACCAGCCAAAGAGGCCCACTGGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCG
* * * * * * * * *
14892142 GTCTCTCACTGCATGCTACCGATCCTGCTACCGGTCTTGCTGCCACAACCCTTAGTCCAGCTGGG
642 ATCCCCCACTACATGCTACCGATCCCGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGCTAGG
* ** * * *
14892207 GCTTAGACATGTAATAAACTCTGTATGCCTAAGCCAACCCCCGAAATGAGCGTACAGGCACTCGA
707 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACAAAAGGAGCGTACAGGCACTCGA
* * **
14892272 CCAGCCAGAGAGGCAAAATACGCAAGCCGAGGATCAGCCCGATCCCCCCTTGCATGCTGTCGATC
772 CCAACCAGAGAGGCAAAATACGCAAGCCGAGGATCAGCCCGATCCCCCCTTACATGCTACCGATC
14892337 CTGCTACTGGTCCTGCTACTGCAACCCTCGGACCGATCCG
837 CTGCTACTGGTCCTGCTACTGCAACCCTCGGACCGATCCG
* *
14892377 ATCTTAGATTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT-TGTATGCCTAAGCCAAC
* * * * * * * *
14892442 CCACGAAATGAGCGTGCGGGCGCTTAGCAGGCCGGAGAGGCAGAATGCAAATGCCGAGGATCGAT
65 CCATGAAACGAGCATGCGGGCGCTCAGCAGGCCGGAGAGGCAGAATGCAAA-GCTGGGGACCGAC
* * * * * * *
14892507 TCGGTCCCCCTACATGCTATCGATCTTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGATTGG
129 CCGATCCCCCTACATGCTGTCGATCATGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * *
14892572 GAATGAACT-TCGTATGCCTAACTCAACCCAC-AAATTTAACGTTCAGGCGCTGAGCCGGTCGGA
194 GAATGAACTCT-GTATGCCTAAGTCAACCCACGAAA-TGAACGTAC-GGAGCTGAGCCGGTCGGA
** ** * * * *
14892635 GAGGCATAATGCATAAGCCAGGGATCAGCCCGGTCCCTCTCTGTGTGCTACCGATCCCACTGCCA
256 GAGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCATTGCCA
* * * *
14892700 CAACCCTCGGTCCGGCTAGGGCTTAGACATGGGATGAACTCCTTATGCCTAAGCCAACCCACAAA
321 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * ** * *
14892765 ACGGGCATGTGGGTGCTCAATCGATCAGAGAGGTAGAATGCGTAAGTCGAGGATCGGCTTGATTC
386 ACGGGCATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTTGATTC
*
14892830 CCCCTACGTGCTGCTGATCCTGCTGCGACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGA
451 CCCCTGCGTGCTGCTGATCCTGCTGCG-CAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGA
* ** ** * *
14892895 ACTTCGTATGCTTAGACTGGGAATGAACTTTGTTTGCCTAAGTCAACCTATGAAATGAGCGTGCG
515 ACTTCGTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCG
* * * * *
14892960 GATGCTCAACCGGCCAAAGAGGCCCA-TCGGAGAGGCATAATGCGTAAGCC-AGGGATCTGCCCG
580 G-CGCTCAACCAGCCAAAGAGGCCCACT-GGAAAGGCATAATGCGCAAGCCGA-GGATCAGCCCG
* * ** *** *
14893023 ATCCCCCTCTACGTGCTGTCGATCCCGCTGTTGATCCTGCTGCCACAACCCTCGGTCC-GACTAG
642 ATCCCCCACTACATGCTACCGATCCCGCTACCGATCCTGCTGCCACAACCCTCAGTCCAG-CTAG
* * * * **
14893087 GGCTTAGACGTGGAATGAACTCCATATGCCTAAGCCAACCCATAAAAGGAGCGTGCAGGTGCTC-
706 GGCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACAAAAGGAGCGTACAGGCACTCG
* * * * * *
14893151 AGCCAACCAGAGAGGTAGAATGCGCAAGCC-AGGGATCGGCCCGATCCCTCCTTACGTGCTACCG
771 A-CCAACCAGAGAGGCAAAATACGCAAGCCGA-GGATCAGCCCGATCCCCCCTTACATGCTACCG
* * * * ** * *
14893215 ATCTTGCTACTGGTCTTGCTATTGCAACCCT-TGATTGGGTCTG
834 ATCCTGCTACTGGTCCTGCTACTGCAACCCTCGGA-CCGATCCG
*
14893258 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTAGTATACCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTT-GTATGCCTAAGCCAAC
* * * * *
14893323 CCATGAAACGAGTATGCGAGCACACAGTC-GGCTGGAGAGGCAGAATGCATAAGCTGGGGACCGA
65 CCATGAAACGAGCATGCGGGCGCTCAG-CAGGCCGGAGAGGCAGAATGCA-AAGCTGGGGACCGA
** * * * ** * * *
14893387 CCCGATCCCCCCTGTATGCTGTCAATCATACTGCGGCAA-TGTATGGTCCGATCCGATCTTAGAC
128 CCCGAT-CCCCCTACATGCTGTCGATCATGCTGCCGCAACCCT-CGGTCTGGTCCGATCTTAGAC
* * * * **
14893451 TGGGACTGAACTCTGTATGCCTAAGTTAACCCACGAAATGAGA-GTGCGGGAGCTGAGCTGACCG
191 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGA-ACGTAC-GGAGCTGAGCCGGTCG
**
14893515 GAGAGGCATAATGCGCAAGCTGGGGATCTA-CCCAATCCCCCTCTGCGTGCTGCCAGA-CCCATT
254 GAGAGGCATAATGCGCAAGCTGGGGATC-AGCCCGGTCCCCCTCTGCGTGCTGCC-GATCCCATT
* *
14893578 GCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA-CCAACCCA
317 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
** * * **
14893642 CGAAATAGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCG
382 CGAAACGGGCATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTTG
* ** * *
14893707 A-TCCACCCTGCGTGCTGCTGATCCTGCTACCGCAACCCTTGATTCGGT-TCGATCTTAGATTGG
447 ATTCC-CCCTGCGTGCTGCTGATCCTGCT-GCGCAACCCTCAATCCGGTCT-GATCTTAGACTGG
* * * * * ** * *
14893770 GAATGAACTCCATATGGTTAGATTGGGGATGAACCCCATATGCTTAAGTCAACCCACGAAACGAG
509 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAG
14893835 CGTGCGGGCGCTCA
574 CGTGC-GGCGCTCA
14893849 GCCGACCGGA
Statistics
Matches: 1208, Mismatches: 232, Indels: 62
0.80 0.15 0.04
Matches are distributed among these distances:
878 7 0.01
879 211 0.17
880 280 0.23
881 510 0.42
882 192 0.16
883 8 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (876 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTGTATGCCTAAGCCAACC
CATGAAACGAGCATGCGGGCGCTCAGCAGGCCGGAGAGGCAGAATGCAAAGCTGGGGACCGACCC
GATCCCCCTACATGCTGTCGATCATGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
ATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTACGGAGCTGAGCCGGTCGGAGAGGC
ATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCATTGCCACAACC
CTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
CATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTTGATTCCCCCT
GCGTGCTGCTGATCCTGCTGCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCG
TATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCGCTC
AACCAGCCAAAGAGGCCCACTGGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCAC
TACATGCTACCGATCCCGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACA
TGGAATAAACTCCATATGCCTAAGCCAACCCACAAAAGGAGCGTACAGGCACTCGACCAACCAGA
GAGGCAAAATACGCAAGCCGAGGATCAGCCCGATCCCCCCTTACATGCTACCGATCCTGCTACTG
GTCCTGCTACTGCAACCCTCGGACCGATCCG
Done.