Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 90 of 138
Found at i:14893801 original size:26 final size:26
Alignment explanation
Indices: 14893761--14893811 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14893751 CGGTTCGATC
*
14893761 TTAGATTGGGAATGAACTCCATATGG
1 TTAGATTGGGAATGAACCCCATATGG
*
14893787 TTAGATTGGGGATGAACCCCATATG
1 TTAGATTGGGAATGAACCCCATATG
14893812 CTTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGATTGGGAATGAACCCCATATGG
Found at i:14894944 original size:26 final size:26
Alignment explanation
Indices: 14894902--14894952 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14894892 GGCTCAAAAT
*
14894902 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14894928 CTTAGACAT-GGATTGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
14894953 ATGTCTAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14895230 original size:159 final size:158
Alignment explanation
Indices: 14894988--14895430 Score: 419
Period size: 159 Copynumber: 2.8 Consensus size: 158
14894978 CCGTTCGGGT
* * * * * * * *
14894988 GCTCAGCCTACCGAAGAGGCAGAATGCGCAA-CCGGGGATCAGCCCGATCCCCCCTACGTGCTG-
1 GCTCAGCCGACCGAAAAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGATGC
* * * ** *
14895051 TCAATCTTGCTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCAT
66 T-GATCCTACTGCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCAT
*
14895116 AAGTCAACCCACAAAATGAGCGTACGGGT-
130 AAGCCAACCCACAAAATGAGCGTAC-GGTC
* * * * *
14895145 GCTGAGCTGACCGAAAAGGCATAATGCACAAGCCAGGGATCGGCTCGGTCCCCCTCTACGTGCTG
1 GCTCAGCCGACCGAAAAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCC-CTACGTGATG
* * * ** *
14895210 GTGGTCCTACTGCCCCAACCCTCGGTCC-AGCTGGGGCTTAGAC-ATGGAATGAACTCCCTATGC
65 CTGATCCTACTGCCCCAACCCTCGGTCCGATCT-GATCTTAGACTA-GGAATGAACTCCGTATGC
* *
14895273 ATAAGCCAATCCACAAAATGGGCGTACGGTC
128 ATAAGCCAACCCACAAAATGAGCGTACGGTC
** * * *** * *
14895304 GCTCAGCCGGTCGGAGAGGCAAAATGTGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGATGC
1 GCTCAGCCGACCGAAAAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGATGC
* * * * * *
14895369 TGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
66 TGATCCTACTGCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGC
14895431 TTAGACTAGG
Statistics
Matches: 228, Mismatches: 50, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 25 0.11
158 81 0.36
159 121 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTCAGCCGACCGAAAAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGATGC
TGATCCTACTGCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATA
AGCCAACCCACAAAATGAGCGTACGGTC
Found at i:14895433 original size:26 final size:26
Alignment explanation
Indices: 14895404--14895456 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14895394 CCGGTCCGAT
14895404 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
14895430 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14895456 C
1 C
14895457 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14895684 original size:159 final size:157
Alignment explanation
Indices: 14895429--14895736 Score: 386
Period size: 159 Copynumber: 1.9 Consensus size: 157
14895419 AACTCCGTAT
* * * * *
14895429 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAA
1 GCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* * * *
14895494 CTGGTTGGAGAGGCATAATGCGTAACCCGGGGATC-GACTCGGTCCCCCTCAGTGTGCTGTCGGT
66 CCGGTCGGAGAGGCAAAATGCGTAACCCGGGGATCAG-CTCGGTCCCCCT--GTGTGCTGTCGAT
14895558 CCCGCTGCCACAACCCTCGATCCGGCTGGG
128 CCCGCTGCCACAACCCTCGATCCGGCTGGG
* * * * *
14895588 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCGCTTA
1 GCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * *
14895652 ACCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGTTCGGTTCCCCTGTGTGCTGTCGATCT
65 ACCGGTCGGAGAGGCAAAATGCGTAACCCGGGGATCAGCTCGGTCCCCCTGTGTGCTGTCGATCC
* *
14895717 TGCTGCCACAACCCTTGATC
130 CGCTGCCACAACCCTCGATC
14895737 TAGTCCGATC
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
157 31 0.24
158 1 0.01
159 94 0.74
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (157 bp):
GCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
CCGGTCGGAGAGGCAAAATGCGTAACCCGGGGATCAGCTCGGTCCCCCTGTGTGCTGTCGATCCC
GCTGCCACAACCCTCGATCCGGCTGGG
Found at i:14895788 original size:26 final size:26
Alignment explanation
Indices: 14895746--14895798 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14895736 CTAGTCCGAT
*
14895746 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTCGGAGTGAACTTCGTATG
14895772 CTTAGACTACGGA-TGAACTTCGTATG
1 CTTAGACT-CGGAGTGAACTTCGTATG
14895798 C
1 C
14895799 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTCGGAGTGAACTTCGTATG
Found at i:14895872 original size:342 final size:342
Alignment explanation
Indices: 14895087--14895892 Score: 1005
Period size: 343 Copynumber: 2.4 Consensus size: 342
14895077 CCGATCTGAT
* * * * *
14895087 CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGTGCTGAGC
1 CTTAGACTAGG-ATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAAC
* * ** * *
14895152 TGACCGAAAAGGCATAATGCACAAGCC-AGGGATCGGCTCGGTCCCCCTCTA-CGTGCTGGTGGT
65 TGGCCGAAGAGGCATAATGCGTAAGCCGA-GGATCGACTCGGTCCCCCTC-AGTGTGCTGGTGGT
* * *
14895215 CCTACTGCCCCAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCC
128 CCCACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCC
* * * * *
14895280 AATCCACAAAATGGGCGTACGGTCGCTCAGCCGGTCGGAGAGGCAAAATGTGTAAGCCGGGGATC
193 AACCCACAAAACGGGCGTACGGGCGCTCAACCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATC
* * *
14895345 GGCCCGGTCCCCCCTGCGTGATGCTGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGA
258 AGCCCGGTCCCCCCTGCGTGATGCTGATCCTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGA
14895410 CTGGGAATGAACTCCGTATG
323 CTGGGAATGAACTCCGTATG
* **
14895430 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAAC
1 CTTAGACTA-GGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAAC
** * * *
14895495 TGGTTGGAGAGGCATAATGCGTAACCCGGGGATCGACTCGGTCCCCCTCAGTGTGCT-GTCGGTC
65 TGGCCGAAGAGGCATAATGCGTAAGCCGAGGATCGACTCGGTCCCCCTCAGTGTGCTGGT-GGTC
* * *
14895559 CCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCA
** * *
14895624 ACCCATGAAACGGGTGTACGGGCGCTTAACCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCA
194 ACCCACAAAACGGGCGTACGGGCGCTCAACCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCA
** * * * * * *
14895689 GTTCGGT-TCCCCTGTGTGCTG-TCGATCTTGCTGCCACAACCCTTGATCTAGTCCGATCTTAGA
259 GCCCGGTCCCCCCTGCGTGATGCT-GATCCTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGA
* *
14895752 CTGGGAGTGAACTTCGTATG
323 CTGGGAATGAACTCCGTATG
* * *
14895772 CTTAGACTACGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTC-AT
1 CTTAGACTA-GGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAAC
* * * *
14895836 TCGGCCGAAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCC-CTGTGTGCT
65 T-GGCCGAAGAGGCATAATGCGTAAGCCGAGGATCGACTCGGTCCCCCTCAGTGTGCT
14895893 ACCGATCCTG
Statistics
Matches: 394, Mismatches: 63, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
341 11 0.03
342 161 0.41
343 220 0.56
344 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (342 bp):
CTTAGACTAGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAACT
GGCCGAAGAGGCATAATGCGTAAGCCGAGGATCGACTCGGTCCCCCTCAGTGTGCTGGTGGTCCC
ACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAAC
CCACAAAACGGGCGTACGGGCGCTCAACCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGC
CCGGTCCCCCCTGCGTGATGCTGATCCTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:14895960 original size:184 final size:185
Alignment explanation
Indices: 14895588--14896324 Score: 748
Period size: 184 Copynumber: 4.0 Consensus size: 185
14895578 TCCGGCTGGG
* * * * *
14895588 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-G-GTGTACGGGCGCTT
1 GCTTAGACAAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGT--GGGCACTC
* * * * * *
14895651 AACCGGTCGGAGAGGCAAAATGCGTAAGCCG-GGGATC-A-GTTCGGT-TCCCCTGTGTGCTGTC
64 AGCCGGCCGGAGAGGCAGAATGCATAAGCCGAGAGATCGACG--CGGTCCCCCCTGTGTGCTGTC
* * * * * * *
14895712 GATCTTGCTGCCACAACCCT-TGATCTAGTCCGATCTTAGACTGGGAGTGAACTTCGTAT
127 GATCCTGCTACCGCAACCCTCAG-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * **
14895771 GCTTAGACTACGG-ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCA
1 GCTTAGAC-AAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCA
** * * * * **
14895835 TTCGGCCGAAGAGGTAGAATGCGTAAGCCGAG-GATCGACCCGGTCCCCCCTGTGTGCTACCGAT
65 GCCGGCCGGAGAGGCAGAATGCATAAGCCGAGAGATCGACGCGGTCCCCCCTGTGTGCTGTCGAT
* * * *
14895899 CCTGCTGCTGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATCAACTCCGTAT
130 CCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
** * *
14895955 GCTTAGACAAGGAATGAAC-TCAGTATGCCTAAGCCAAGGCATGAAACGAGCGCGTAGGCACTCA
1 GCTTAGACAAGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCA
* * * ** *
14896019 GCCGACCGGAGAGGCAGAATGCACAAGCTG-GAGATCGGTGCGGTCCCCCCTGCGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCATAAGCCGAGAGATCGACGCGGTCCCCCCTGTGTGCTGTCGAT
* * *
14896083 CCTACTACCGCAACCCTCCATTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTGCTACCGCAACCCT-CAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
14896139 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACAAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAG
* * * * *
14896204 CCGGCCGGAGAGGCAGAATGCATAAACC-AGAGATC-AGCGTGGTCCCCACTATTTGCTGTCGAT
66 CCGGCCGGAGAGGCAGAATGCATAAGCCGAGAGATCGA-CGCGGTCCCCCCTGTGTGCTGTCGAT
* *
14896267 CCTGCTACCGCAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTGCTACCGCAACCCTCAGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTAT
14896323 GC
1 GC
14896325 CTAAGTCAAC
Statistics
Matches: 457, Mismatches: 80, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
183 87 0.19
184 359 0.79
185 11 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
GCTTAGACAAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCATAAGCCGAGAGATCGACGCGGTCCCCCCTGTGTGCTGTCGATC
CTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14895968 original size:26 final size:26
Alignment explanation
Indices: 14895930--14895982 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14895920 CCAGTCTGAT
** *
14895930 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACAAGGAATCAACTCAGTATG
*
14895956 CTTAGACAAGGAATGAACTCAGTATG
1 CTTAGACAAGGAATCAACTCAGTATG
14895982 C
1 C
14895983 CTAAGCCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATCAACTCAGTATG
Found at i:14896140 original size:368 final size:366
Alignment explanation
Indices: 14895588--14896324 Score: 865
Period size: 368 Copynumber: 2.0 Consensus size: 366
14895578 TCCGGCTGGG
* * * * *
14895588 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCGCTTAA
1 GCTTAGACAAGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACGGGCGTAC-GGCACTCAA
** ** * * * * *
14895653 CCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGTTCGGTTCCCCTGTGTGCTGTCGATCTT
65 CCGACCGGAGAGGCAAAATGCACAAGCCGGAGATCAGTGCGGTCCCCCTGCGTGCTGTCGATCCT
* * ** * * *
14895718 GCTGCCACAACCCTTGATCTAGTCCGATCTTAGACTGGGAGTGAACTTCGTATGCTTAGACTACG
130 ACTACCACAACCCTCCATCGAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ACG
* * * * ** **
14895783 G-ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCATTCGGCCGAAGA
194 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGCCGAAGA
* * * * * * *
14895847 GGTAGAATGCGTAAGCC-GAGGATC-GACCCGGTCCCCCCTGTGTGCTACCGATCCTGCTGCTGC
259 GGCAGAATGCATAAACCAGA-GATCAG-CCCGGTCCCCACTATGTGCTACCGATCCTGCTACCGC
14895910 AACCCTCAGTCC-AGTCTGATCTTAGACTGGGAATCAACTCCGTAT
322 AACCCTCAGTCCGA-TCTGATCTTAGACTGGGAATCAACTCCGTAT
* **
14895955 GCTTAGACAAGGAATGAACTCAGTATGCCTAAGCCAAGGCATGAAACGAGCGCGTA-GGCACTCA
1 GCTTAGACAAGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACG-G-GCGTACGGCACTCA
* * * *
14896019 GCCGACCGGAGAGGCAGAATGCACAAGCTGGAGATCGGTGCGGTCCCCCCTGCGTGCTGTCGATC
64 ACCGACCGGAGAGGCAAAATGCACAAGCCGGAGATCAGTGCGGT-CCCCCTGCGTGCTGTCGATC
*
14896084 CTACTACCGCAACCCTCCATTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACA
128 CTACTACCACAACCCTCCA-TCGAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACA
* * *
14896148 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGGCCGGA
192 CGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGCCGAA
** * **
14896213 GAGGCAGAATGCATAAACCAGAGATCAGCGTGGTCCCCACTATTTGCTGTCGATCCTGCTACCGC
257 GAGGCAGAATGCATAAACCAGAGATCAGCCCGGTCCCCACTATGTGCTACCGATCCTGCTACCGC
* *
14896278 AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
322 AACCCTCAGTCCGATCTGATCTTAGACTGGGAATCAACTCCGTAT
14896323 GC
1 GC
14896325 CTAAGTCAAC
Statistics
Matches: 308, Mismatches: 54, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
367 86 0.28
368 211 0.69
369 11 0.04
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (366 bp):
GCTTAGACAAGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACGGGCGTACGGCACTCAAC
CGACCGGAGAGGCAAAATGCACAAGCCGGAGATCAGTGCGGTCCCCCTGCGTGCTGTCGATCCTA
CTACCACAACCCTCCATCGAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGA
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGCCGAAGAGG
CAGAATGCATAAACCAGAGATCAGCCCGGTCCCCACTATGTGCTACCGATCCTGCTACCGCAACC
CTCAGTCCGATCTGATCTTAGACTGGGAATCAACTCCGTAT
Found at i:14896143 original size:26 final size:26
Alignment explanation
Indices: 14896114--14896166 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14896104 TCGATCCGAT
14896114 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14896140 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14896166 C
1 C
14896167 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14896556 original size:159 final size:158
Alignment explanation
Indices: 14896141--14896557 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 158
14896131 CTCCGTATGC
** *
14896141 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCT
* * * ** * * * *
14896206 GGCCGGAGAGGCAGAATGCATAAACCAGAGATCAGCGTGGTCCCCACTATTTGCTGTCGATCCTG
66 GGCCGGAGAGGCAGAATGCACAAACCAGGGATCGGCCCGATCCCCACTACTTGCTGACGATCCTA
* * **
14896271 CTACCGCAACCCTCGGTCCGATCTGATC
131 CTACCACAACCCTCGGTCCGAGCTGAGA
* * * *
14896299 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAATGGGCGTGCGGGCACTGAG-
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGC
** * * * * * *
14896362 TCAACCGGAGGGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCTCTCTACTTGCTGACGGT-
65 T-GGCCGGAGAGGCAGAATGCACAAACCAGGGATCGGCCCGATCCC-CACTACTTGCTGACGATC
*
14896426 CTCACTACCACAACCCTCGGTCCG-GCTGGGGA
128 CT-ACTACCACAACCCTCGGTCCGAGCT-GAGA
* * * **
14896458 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCT
* *
14896523 GGTCGGAGAGGCAGAACGCACAAACCAGGGATCGG
66 GGCCGGAGAGGCAGAATGCACAAACCAGGGATCGG
14896558 TCCGGTCTGA
Statistics
Matches: 206, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 91 0.44
159 112 0.54
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGCT
GGCCGGAGAGGCAGAATGCACAAACCAGGGATCGGCCCGATCCCCACTACTTGCTGACGATCCTA
CTACCACAACCCTCGGTCCGAGCTGAGA
Found at i:14896610 original size:26 final size:26
Alignment explanation
Indices: 14896569--14896621 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14896559 CCGGTCTGAT
14896569 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
14896595 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14896621 C
1 C
14896622 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14897815 original size:158 final size:156
Alignment explanation
Indices: 14897327--14897827 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 156
14897317 AACTCCTATG
* * * * *
14897327 CTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACTCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG-
* * * * * *
14897392 CGGTCGGAGAGGCAGAATGTGCAAGTTGAGGATCGACCCGGTCCCCCTGCATGCTATCGATCCTG
65 CGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTGCGTGCTATCGATCCCG
* * * * * *
14897457 CTGCTATAACCCTCAGTCCGGTCTAAT
130 CTACCACAACCCTCGGTCTGGTCTGAT
* * * * * *
14897484 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGTCGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT-ACGGGCGCTCA
* * * * * * *
14897548 ACCGACTGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCT-CTATGTGCTATC-A
64 GCGGTC-GGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTGC---GTGCTATCGA
* * **
14897611 GCCCCGCTACCACAACCCTCGGTCT-GACTGGGG
125 -TCCCGCTACCACAACCCTCGGTCTGGTCT-GAT
* *
14897644 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * *
14897709 TGGTCGGAGAGGCAGAATGTGAAAGTCGGGGATCGGCCTGGTCCCTCCTGCGTGCCACCGATCCC
66 -GGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTCCC-CCTGCGTGCTATCGATCCC
*
14897774 GCTACCGCAACCCTCGGTCTGGTCTGAT
129 GCTACCACAACCCTCGGTCTGGTCTGAT
14897802 CTTAGAC-TGGGAATGAACT-CGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14897828 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 57, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 54 0.20
158 89 0.33
159 52 0.19
160 74 0.27
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
GGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTGCGTGCTATCGATCCCGC
TACCACAACCCTCGGTCTGGTCTGAT
Found at i:14897836 original size:25 final size:26
Alignment explanation
Indices: 14897802--14897853 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14897792 CTGGTCTGAT
14897802 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14897827 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14897853 C
1 C
14897854 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14898154 original size:171 final size:171
Alignment explanation
Indices: 14897826--14898144 Score: 374
Period size: 171 Copynumber: 1.9 Consensus size: 171
14897816 GAACTCGTAT
* * * ** *
14897826 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCACAAAATGAGCGTACGGGCACTCTG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCAG
* ** * *
14897891 CCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCTTCTGCGTGCAGTCGATC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCCTGCATGCAGCCGATC
* *
14897956 CCGCTGCCGGTCTTGCTACCACAACCCTCAGTCCGACTGGG
131 CCACTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTGGG
** * *
14897997 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCA
* * * * *
14898061 GCCAG-CTGGAGAGGTAGAATGCGCAAGTTCG-GGATCGGCCCGGTCCCCCCCTGCATGCTGCCG
65 GCCAGTC-GGAGAGGCAGAATGCGCAAG-CCGAGGATCAGCCCGATCCCCCCCTGCATGCAGCCG
* *
14898124 ATCCTACTGCTGGTCCTGCTA
128 ATCCCACTGCCGGTCCTGCTA
14898145 TAGCAACCCT
Statistics
Matches: 121, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
170 1 0.01
171 117 0.97
172 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCAG
CCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCCTGCATGCAGCCGATC
CCACTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTGGG
Found at i:14899420 original size:26 final size:26
Alignment explanation
Indices: 14899369--14899421 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14899359 GGCTCAAAAT
* *
14899369 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14899395 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
14899421 C
1 C
14899422 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14899587 original size:26 final size:26
Alignment explanation
Indices: 14899552--14899604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14899542 CTGATATGAT
*
14899552 CTTAGGCTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
14899578 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14899604 C
1 C
14899605 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14900777 original size:26 final size:26
Alignment explanation
Indices: 14900748--14900798 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14900738 CCGGTCTGAT
* *
14900748 CTTAGATTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
14900774 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14900799 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:14901128 original size:159 final size:157
Alignment explanation
Indices: 14900774--14901136 Score: 379
Period size: 158 Copynumber: 2.3 Consensus size: 157
14900764 ACTCTGTATA
* * * *
14900774 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTACAGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC-CACGAAATGAGCGTACAGGCCTTCAAC
* * * *
14900839 CGATCGGAGAGGCATAATGCACAAGATAGGGATCAGCCCGGCCCTCCCTACGTACTGTCGATCCT
65 CGATCGAAGAGGCATAATGCACAAGATAGGGATCAGCCCGCCCCTCCCTACATACTGTCGATCCC
*
14900904 GCTGCCACAACCCTCGGTTCGATCTGAT
130 GCTGCCACAACCCTCGGTTCGATCTGAG
* * * * *
14900932 CTTAGACTGGGAATGAACTTCATATGCATAAGTCAACCGACGAAATGAGCTTACGGGCCTTGAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC-ACGAAATGAGCGTACAGGCCTTCAAC
* * * * * * * ** *
14900997 CGGTCGAAGAGGCATAATGCATAAGTTGGGGATCAGCCTGATCCCCT-TCTGCATGTTGTCGGTC
65 CGATCGAAGAGGCATAATGCACAAGATAGGGATCAGCCCG--CCCCTCCCTACATACTGTCGATC
* * *
14901061 CCGCTGCCATAGCCCTCGGTTCGA-CTGGGG
128 CCGCTGCCACAACCCTCGGTTCGATCT-GAG
* * * *
14901091 CTTAGACTTGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAAT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA-CCACGAAAT
14901137 AGGTGTGCGG
Statistics
Matches: 167, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.01
158 90 0.54
159 70 0.42
160 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCACGAAATGAGCGTACAGGCCTTCAACC
GATCGAAGAGGCATAATGCACAAGATAGGGATCAGCCCGCCCCTCCCTACATACTGTCGATCCCG
CTGCCACAACCCTCGGTTCGATCTGAG
Found at i:14901285 original size:26 final size:26
Alignment explanation
Indices: 14901249--14901301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14901239 CCGATCTAAT
14901249 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14901275 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14901301 C
1 C
14901302 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14901349 original size:501 final size:501
Alignment explanation
Indices: 14900269--14901351 Score: 1227
Period size: 501 Copynumber: 2.2 Consensus size: 501
14900259 ACCGTGGCTC
* * * * * * *
14900269 ATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCT
1 ATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACACATGGAACTAGCGTACGGGCGTT
* * * * *
14900333 CAGCCGG-CTGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTTCCCCCCTGCGTGCTGTC
65 CAGCCGGTC-GGAGAGGCAGAATGCACAAGCAGAGGATCGACCCAGTGCCCCCCTACGTACTGTC
* * * * * *
14900397 TATCCTGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTAAGCATAA
129 GATCCTGCTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATAAGCATAA
* **
14900462 GTCAACCCACAAAATGAGCGTACGGGCACTGACCCAGCCGAAGAGGCATAATGTGCAAGTAGGGG
194 GTCAACCCACAAAATGAGCGTACGGGCACTGAACCAGCCGAAGAGGCATAATGCACAAGTAGGGG
* * *
14900527 ATCGACCCGGTCCCCATCTACGTGCTGCCAGTGCCGCTACCACAACCCTCGATCCGACTGGGGCT
259 ATCGACCCGATCCCCATCTACATGCTGCCAGTCCCGCTACCACAACCCTCGATCCGACTGGGGCT
* * * * *
14900592 TAGACATGGAATGAACTCCTTATGCCTAAGCCATCCCATGAAACGGGTGTGCCGACGCTCAGCCG
324 TAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGTGTGCCGACGCTCAGCCG
** * * *
14900657 GTCGAAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCTGC
389 ACCGAAGAGGCAGAATGCGTAAGCCAAGGATCGGCCAGATCCCCACTACGTGCTACCGATCCTGC
* * * * **
14900722 TATCAAAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGT
454 TATC-AAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCAT
* * * * *
14900771 ATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCA-CGAAATGAGCGTACAGGCGTT
1 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACATGGAACT-AGCGTACGGGCGTT
* * *
14900835 CAGCCGATCGGAGAGGCATAATGCACAAG-ATAGGGATC-AGCCC-G-GCCCTCCCTACGTACTG
65 CAGCCGGTCGGAGAGGCAGAATGCACAAGCAGA-GGATCGA-CCCAGTGCCC-CCCTACGTACTG
* * *
14900896 TCGATCCTGCTGCCACAACCCTCGGT-TCGATCTGATCTTAGACTGGGAATGAACTTCATATGCA
127 TCGATCCTGCTACCACAACCCTCGGTCT-GATCTGATCTTAGACTGGGAATGAACTCCATAAGCA
* * * * * * *
14900960 TAAGTCAACCGACGAAATGAGCTTACGGGC-CTTGAACCGGTCGAAGAGGCATAATGCATAAGTT
191 TAAGTCAACCCACAAAATGAGCGTACGGGCAC-TGAACCAGCCGAAGAGGCATAATGCACAAGTA
* * * * * * * * * * *
14901024 GGGGATC-AGCCTGATCCCCTTCTGCATGTTGTCGGTCCCGCTGCCATAGCCCTCGGTTCGACTG
255 GGGGATCGA-CCCGATCCCCATCTACATGCTGCCAGTCCCGCTACCACAACCCTCGATCCGACTG
* * * * *
14901088 GGGCTTAGACTTGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATAGGTGTGCGGTCGCTT
319 GGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGTGTGCCGACGCTC
* * * * * *
14901153 AGTCGACC-AGATAGGCAGAATGCGTAAGCTAGGGATTGTCCAGATCCCCACTACGTGCTACCGA
384 AGCCGACCGA-AGAGGCAGAATGCGTAAGCCAAGGATCGGCCAGATCCCCACTACGTGCTACCGA
14901217 TCCTGCTACTGC-AACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCAT
448 TCCTGCTA-T-CAAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCAT
*
14901272 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGGAACTAGCGTACGGGCGTTC
1 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACATGGAACTAGCGTACGGGCGTTC
*
14901337 AGTCGGTCGGAGAGG
66 AGCCGGTCGGAGAGG
14901352 TCGATCGGAG
Statistics
Matches: 481, Mismatches: 87, Indels: 27
0.81 0.15 0.05
Matches are distributed among these distances:
500 7 0.01
501 388 0.81
502 84 0.17
503 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (501 bp):
ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACATGGAACTAGCGTACGGGCGTTC
AGCCGGTCGGAGAGGCAGAATGCACAAGCAGAGGATCGACCCAGTGCCCCCCTACGTACTGTCGA
TCCTGCTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATAAGCATAAGT
CAACCCACAAAATGAGCGTACGGGCACTGAACCAGCCGAAGAGGCATAATGCACAAGTAGGGGAT
CGACCCGATCCCCATCTACATGCTGCCAGTCCCGCTACCACAACCCTCGATCCGACTGGGGCTTA
GACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGTGTGCCGACGCTCAGCCGAC
CGAAGAGGCAGAATGCGTAAGCCAAGGATCGGCCAGATCCCCACTACGTGCTACCGATCCTGCTA
TCAAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCAT
Found at i:14904305 original size:26 final size:26
Alignment explanation
Indices: 14904276--14904328 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14904266 CCGATCCAAT
14904276 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
14904302 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14904328 C
1 C
14904329 CTAAGTCCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14905662 original size:11 final size:11
Alignment explanation
Indices: 14905646--14905683 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
14905636 GGCCCTTCGG
14905646 CGATGCTCCGA
1 CGATGCTCCGA
14905657 CGATGCTCCGA
1 CGATGCTCCGA
14905668 CGATGCTCCGA
1 CGATGCTCCGA
*
14905679 TGATG
1 CGATG
14905684 GTGCCCCGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (11 bp):
CGATGCTCCGA
Found at i:14905791 original size:26 final size:26
Alignment explanation
Indices: 14905753--14905805 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14905743 GGCTCAAAAT
14905753 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14905779 CTTAGAC-GTGGAATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
14905805 C
1 C
14905806 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14906122 original size:159 final size:158
Alignment explanation
Indices: 14905778--14906438 Score: 581
Period size: 159 Copynumber: 4.2 Consensus size: 158
14905768 AACTCCGTAT
* * * * **
14905778 GCTTAGACGTGGAATGAACTTCGTATGCCTAAGCCAACTTACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * ** * * * * *
14905843 CCGGCCGAAAAGGCAGAATGCACAAGTTGGTGATCGACCCGGA-CCCTCCTGCGTGCTGTCAATC
66 CCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCC-GATCCCCCCTGCGTGCTGCCGATC
* * * **
14905907 CTACTGCTACAACCCTCGATCT-GATCCAA
130 CTGCTGCCACAACCCTCGATCTGGCT-GGA
* * * * * * *
14905936 TCATAGAC-TGGGAATGAACTCCATATGCATAAGTCAACGCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
14906000 GCCGATCGAAGAGGCATAATGCACAAGCCGGGGATAGGCCCGATCCCCCTCTGCGTGCTGCCGGT
65 GCCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
* *
14906065 CCTGCTACCACAACCCTCGATCTGGCTGGG
129 CCTGCTGCCACAACCCTCGATCTGGCTGGA
* * *
14906095 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * * *
14906159 GCC-AGTAGGAGAGGCAGAATGCGA-AAGCCGGGGATCGGCCCAAT-CCCCCTGGGTGCTGCTGA
65 GCCGA-TCGAAGAGGCAGAATGC-ACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGA
* * *
14906221 TCCCGCTGCCACAACCCTCGGTCTGACTGGA
128 TCCTGCTGCCACAACCCTCGATCTGGCTGGA
* * * * *
14906252 GCTTAGACATGGAATAAACTCCCTATG-ACTAAGCCAACCCATGAAACGGGCTTGCAGGGCGTTC
1 GCTTAGACATGGAATGAACTCCCTATGCA-TAAGCCAACCCACGAAACGAGCGTGC-GGGCGCTC
* * * ** * *
14906316 AGCAG-GCTGGAGAGGCAGAAAACGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGA
64 AGCCGATC-GAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGA
* *
14906380 TCCTGCTGCCGCAACCCTCGA-CTTGG-TCCGA
128 TCCTGCTGCCACAACCCTCGATC-TGGCT-GGA
* *
14906411 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
14906439 TTAGATTGGG
Statistics
Matches: 408, Mismatches: 76, Indels: 36
0.78 0.15 0.07
Matches are distributed among these distances:
157 88 0.22
158 139 0.34
159 177 0.43
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGATCTGGCTGGA
Found at i:14906441 original size:26 final size:26
Alignment explanation
Indices: 14906412--14906464 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14906402 TTGGTCCGAT
14906412 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
14906438 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14906464 C
1 C
14906465 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14906821 original size:26 final size:26
Alignment explanation
Indices: 14906792--14906844 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14906782 CCGGTCCAAT
14906792 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14906818 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14906844 C
1 C
14906845 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14907240 original size:159 final size:159
Alignment explanation
Indices: 14906817--14907263 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 159
14906807 AACTCCGTAT
* ** *
14906817 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-GAAAGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGGGCA-TGCGGGCGCTCA
* * * * * * *
14906881 GCCGACCGGAGAGGTAGAATGCGTAAGTCAGGGATTGGCTCGATCCCTCTCTGCGTGTTGTCGAT
65 GCCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATTGGCCCGGTCCCTCTCTGCGTGCTGCCGAT
* * * *
14906946 CCTGCTGCCACAACCCTCGGTCTGGTCTGA
130 CCCGCTACCACAACCCTCAGTCCGGTCTGA
* * * * * * * * ** *
14906976 TCATAGA-TTGGGAATGAACTCGGTATGCCTAAGTTAACCCATGAAATGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGGGCATGCGGGCGCTCA
* * * ** * *
14907040 GCCGGTCGGAGAGAC-GTAATGCGTAAGCCGGGGATCAGCCCGGTCCCTCTCTGTGTGCTGCCGG
65 GCCGATCGGAGAGGCAG-AATGCGTAAGTCGGGGATTGGCCCGGTCCCTCTCTGCGTGCTGCCGA
* *
14907104 TCCCGCTACGACAACCCTCAGTCCGG-CTGGG
129 TCCCGCTACCACAACCCTCAGTCCGGTCT-GA
* * * *
14907135 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAAGCCACGAAATGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGGGCATGCGGGCGCTCAG
** * * *
14907200 CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCCCGGGCCC-CCCTGCGTGCTGTCGATC
66 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATTGGCCCGGTCCCTCTCTGCGTGCTGCCGATC
14907264 TTGCTGCTGC
Statistics
Matches: 220, Mismatches: 62, Indels: 13
0.75 0.21 0.04
Matches are distributed among these distances:
158 18 0.08
159 200 0.91
160 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGGGCATGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATTGGCCCGGTCCCTCTCTGCGTGCTGCCGATC
CCGCTACCACAACCCTCAGTCCGGTCTGA
Found at i:14907328 original size:25 final size:26
Alignment explanation
Indices: 14907294--14907345 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
14907284 CTGGTCCAAT
14907294 CTTAGACTGGGGATGAACTC-GTATG
1 CTTAGACTGGGGATGAACTCTGTATG
14907319 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
14907345 C
1 C
14907346 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:14914113 original size:158 final size:158
Alignment explanation
Indices: 14913611--14914401 Score: 535
Period size: 158 Copynumber: 4.9 Consensus size: 158
14913601 ACTCCGTATG
* * * *
14913611 CTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAG-GCGCTCAGT
* * * * *
14913676 CAGTCGGAGAGGTAGAATGCACAAGTTGGGGATCGGCCGGATCCCCCCTGCGTGCTGTC-GATCC
65 CGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGGATCC
* *
14913740 TGCTGCCGCAACCATCGGT-CCGATCCGAT
130 TGCTGCCGCAACCCTCGGTCCCG-TTCGAT
* * * * * *
14913769 CTTAGAC-TGGGAATGTACTCCGTATGCTTAA-CTCAACCCATGAAATGAGTGTGCGGGTGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAATGAGCGTG-AGGCGCTCA
* * * * * * * *
14913832 GCCGGCCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCACCCTCTACATGCTGTCGG-
63 GTCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATC-CCCCCTACGTGCTGTCGGA
* * * * **
14913896 TCCTACTGCCACAACCCTCGGTCCCGCTGGGG
127 TCCTGCTGCCGCAACCCTCGGTCCCGTTCGAT
* * * * *
14913928 CTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTGTAGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTG-AGGCGCTCAGT
* * ** *
14913993 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAATCCCCCCTACGTGCTG-CGGATCT
65 CGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGGATCC
* *
14914057 TGCTGTCGCAACCCTTGGTCCCGTTCGAT
130 TGCTGCCGCAACCCTCGGTCCCGTTCGAT
* * * *
14914086 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGC-TTACGGGCGCTCA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGA--GGCGCTCA
* * * * *
14914149 ATCGGTCGTAGAGGCCGATCGAAGAGGTATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCT
63 GTCGGTCGGAGA-G--G--C----A-G---AATGCACAAGTCGGGGATCGGCCCGATCCCCC-CT
* * * * * * **
14914214 ACATGCTGTCGATCCCGGTGCCTATCCTACTACCACAACCCTCGGTCCGGTTGGGG
114 ACGTGC--T-G-T--C-G-G---ATCCTGCTGCCGCAACCCTCGGTCCCGTTCGAT
* ** * *
14914270 CTTAGACATGGAATGGACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTG-AGGCGCTCAGT
* * * * * *
14914335 CAGTCAGAGAGGCAGAATGCGCAAGGCAGGGATCGGCCCG---CCCCCTGCGTGCTGTC-GATCC
65 CGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGGATCC
14914396 TGCTGC
130 TGCTGC
14914402 TGGTCCTGCT
Statistics
Matches: 487, Mismatches: 105, Indels: 85
0.72 0.16 0.13
Matches are distributed among these distances:
155 8 0.02
156 1 0.00
157 7 0.01
158 178 0.37
159 117 0.24
160 6 0.01
161 2 0.00
163 2 0.00
164 1 0.00
165 1 0.00
167 7 0.01
168 5 0.01
171 51 0.10
172 7 0.01
174 2 0.00
175 2 0.00
179 2 0.00
180 1 0.00
181 2 0.00
183 1 0.00
184 82 0.17
185 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGCGCTCAGTC
GGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGGATCCT
GCTGCCGCAACCCTCGGTCCCGTTCGAT
Found at i:14914474 original size:26 final size:26
Alignment explanation
Indices: 14914437--14914489 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14914427 TCGGGTTGAT
*
14914437 CTTAGACTTGGAAAGAACTCCATATG
1 CTTAGACATGGAAAGAACTCCATATG
* *
14914463 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAAAGAACTCCATATG
14914489 C
1 C
14914490 CTACGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCATATG
Found at i:14915355 original size:26 final size:26
Alignment explanation
Indices: 14915317--14915369 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14915307 GGGTCAAAAT
*
14915317 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14915343 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14915369 C
1 C
14915370 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14915737 original size:159 final size:157
Alignment explanation
Indices: 14915342--14915845 Score: 455
Period size: 159 Copynumber: 3.2 Consensus size: 157
14915332 AACTCTGTAT
* *
14915342 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCGG
* * *
14915407 CCAACCGGAGAGGCAAATTGCGCAAGCCGGAGATAGGCTCGGTCCCCCCCTATGTGCTATCGATC
66 CC-ACCGGAGAGGCAAA-TGCACAAGCCGGAGATAGGCTCGGTCCCCCCCTACGTACTATCGATC
**
14915472 TTACTGCCACAACCCTCGGTCCGGTCTGA
129 CCACTGCCACAACCCTCGGTCCGGTCTGA
* * * * * **
14915501 TCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGTGCT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCG
* * * * * ** *
14915564 AGCCAGCCGAAGAGGCATAATGCATAAGGCGGGGATCA-GCTTGGTCCCCTTCTACGTACTGTC-
65 -GCCA-CCGGAGAGGCA-AATGCACAAGCCGGAGAT-AGGCTCGGTCCCCCCCTACGTACTATCG
** * * *
14915627 AGTCCCGTTGCCACAACTCTCGGTCTGG-CTGGG
126 A-TCCCACTGCCACAACCCTCGGTCCGGTCT-GA
*
14915660 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCGG
* * * * * * * * *
14915725 CCGACAGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGGT-CCCCCTTGCGTGCTATCGATC
66 CC-ACCGGAGAGGC-AAATGCACAAGCCGGAGATAGGCTCGGTCCCCCCCTACGTACTATCGATC
* ** * *
14915789 CTACTATCGCAACCCTCGGTCCGGTCCGA
129 CCACTGCCACAACCCTCGGTCCGGTCTGA
* *
14915818 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14915846 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 63, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
157 1 0.00
158 58 0.22
159 201 0.75
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCGG
CCACCGGAGAGGCAAATGCACAAGCCGGAGATAGGCTCGGTCCCCCCCTACGTACTATCGATCCC
ACTGCCACAACCCTCGGTCCGGTCTGA
Found at i:14915855 original size:26 final size:26
Alignment explanation
Indices: 14915819--14915871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14915809 CCGGTCCGAT
*
14915819 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14915845 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14915871 C
1 C
14915872 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14916348 original size:355 final size:347
Alignment explanation
Indices: 14915635--14916490 Score: 825
Period size: 355 Copynumber: 2.4 Consensus size: 347
14915625 TCAGTCCCGT
* * *
14915635 TGCCACAACTCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
* ** * *
14915700 ACGAAACGAGCGTGCGGGCACTCGGCCGACAGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCC
66 ACGAAACGAGCGTGCGGACACTCATCCGAC-GGAGAGGCAAAATGCGCAAGCCGGGGATC-GACC
* * *
14915765 GGTCCCCCT-TGCG-TGCTATCGATCCTACTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
129 GGTCCCCCTCTGCGTTGCTATCGATCCTACTATCGCAACCCTCGATCCGGTCCAATCTTAGACTA
* * * * *
14915828 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAATGAAATGA
194 CGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGA
* * * * *
14915893 GCGTGCGGGCGCTCAATCGGCCGGAGAAGCATAATGCGTAAGTCGGGGATCAGCCAGGTCCCCCT
259 GCGTGCGGGCGCTCAACCGGCCGGAGAAGCAGAATGCGCAAGTCGAGGATCAGCCAGATCCCCCT
* * *
14915958 CTACATTCTATTGATCCCGCTGCCGGTCTTGC
324 CTACATGC--TTGAT--C-CT--C-ATCCTGC
*
14915990 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCA
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
* * *
14916055 ACGAAACGAGCGTGTGGACCCTCATCCGATCGGAGAGGAAAAATGCGCAAGCCGGGGATCGAACC
66 ACGAAACGAGCGTGCGGACACTCATCCGA-CGGAGAGGCAAAATGCGCAAGCCGGGGATCG-ACC
* * * * * * *
14916120 GGTCCCCCTCTGCGTACTGCCAATCCTGCTTTGGTCTTGCTGTCGCAACCCTTGATCTGGTCCAA
129 GGTCCCCCTCTGCGT--TG-C--T-AT-C---GATCCTACTATCGCAACCCTCGATCCGGTCCAA
* *
14916185 TCTTAGACTACGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCTGTATGCCTTAGCCAAC
184 TCTTAGACTACGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
14916249 CCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CTGAGGATCGG
248 CAACGAAATGAGCGTGCGGGCGCTCAACCGGCCGGAGAAGCAGAATGCGCAAGTC-GAGGATCAG
*
14916313 CCCGATCCCGCC-CTACATGC-TG-T-CT-ATCCTGC
312 CCAGATCCC-CCTCTACATGCTTGATCCTCATCCTGC
* **** * * **
14916345 TGCCACAACCCTTGGTCCGG-TCCAATCTTGGAC-TGGGAATGAACTCCGTATGCCTAATTCAAC
1 TGCCACAACCCTCGGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAAC
* ** * * * * * *
14916408 CCACGAAACGAGTGTGCGGATGCTAAGTCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGC
64 CCACGAAACGAGCGTGCGGACACTCA-TCCGACGGAGAGGCAAAATGCGCAAGCCGGGGATCGAC
14916473 CTGGTCCCCCTCTGCGTT
128 C-GGTCCCCCTCTGCGTT
14916491 CTGTCAGTCC
Statistics
Matches: 416, Mismatches: 64, Indels: 44
0.79 0.12 0.08
Matches are distributed among these distances:
353 1 0.00
354 5 0.01
355 241 0.58
356 8 0.02
359 4 0.01
360 1 0.00
362 1 0.00
363 2 0.00
364 3 0.01
366 1 0.00
367 146 0.35
368 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (347 bp):
TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGACACTCATCCGACGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCGG
TCCCCCTCTGCGTTGCTATCGATCCTACTATCGCAACCCTCGATCCGGTCCAATCTTAGACTACG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGC
GTGCGGGCGCTCAACCGGCCGGAGAAGCAGAATGCGCAAGTCGAGGATCAGCCAGATCCCCCTCT
ACATGCTTGATCCTCATCCTGC
Found at i:14916647 original size:159 final size:158
Alignment explanation
Indices: 14916211--14916652 Score: 478
Period size: 159 Copynumber: 2.8 Consensus size: 158
14916201 AACTCCGTAT
* * * *
14916211 GCTTAGACATGGAATGAACTCTGTATGCCTTAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
14916276 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGATCCCGCCCTACATGCTGTCTATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCCTGCGTGCTGTCTATC
* ** *
14916341 CTGCTGCCACAACCCTTGGTCCGGTCCAA
130 CCGCTGCCACAACCCTCAGTCCGCTCCAA
* * ** * **
14916370 TCTTGGAC-TGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGTGTGCGGATGCT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14916433 AGTCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTTCTGTC-A
65 A-CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCTA
***
14916497 GTCCCGCTGCCACAACCCTCAGTCCGACT-GGG
128 -TCCCGCTGCCACAACCCTCAGTCCG-CTCCAA
* * *
14916529 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGCGGCGTGCGGGGGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCA
* * *
14916594 ACCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCACCTGCGTGCTG
65 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTG
14916653 CTGATCCTAT
Statistics
Matches: 227, Mismatches: 48, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
158 5 0.02
159 169 0.74
160 51 0.22
161 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCTATCC
CGCTGCCACAACCCTCAGTCCGCTCCAA
Found at i:14916672 original size:159 final size:157
Alignment explanation
Indices: 14916211--14916715 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 157
14916201 AACTCCGTAT
* * * *
14916211 GCTTAGACATGGAATGAACTCTGTATGCCTTAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
14916276 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGATCCCGCCCTACATGCTGTCTATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCCTGCGTGCTG-CTATC
* *
14916341 CTGCTGCCACAACCCTTGGTCCGGTCCAA
129 CTGCTGCCACAACCCTCGGTCCGCTCCAA
* * ** * **
14916370 TCTTGGAC-TGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGTGTGCGGATGCT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14916433 AGTCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTTCTG-TCA
65 A-CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGCT-A
* * ***
14916497 GTCCCGCTGCCACAACCCTCAGTCCGACT-GGG
127 -TCCTGCTGCCACAACCCTCGGTCCG-CTCCAA
* * *
14916529 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGCGGCGTGCGGGGGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCA
* * *
14916594 ACCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCACCTGCGTGCTGCTGATC
65 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCT-ATC
** ** * ** *
14916659 CTATTATCGCAACCCTCGGTCCAATCCGA
129 CTGCTGCCACAACCCTCGGTCCGCTCCAA
* *
14916688 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14916716 TTAGACAGGG
Statistics
Matches: 272, Mismatches: 62, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 7 0.03
159 209 0.77
160 53 0.19
161 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCTATCCT
GCTGCCACAACCCTCGGTCCGCTCCAA
Found at i:14916718 original size:26 final size:26
Alignment explanation
Indices: 14916689--14916741 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14916679 CCAATCCGAT
*
14916689 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
* *
14916715 CTTAGACAGGGTATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
14916741 C
1 C
14916742 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:14917784 original size:26 final size:26
Alignment explanation
Indices: 14917755--14917804 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14917745 CGATCCGATC
14917755 TTAGACTAGGAATGAACTCCGTATAG
1 TTAGACTAGGAATGAACTCCGTATAG
* *
14917781 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
14917805 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATAG
Found at i:14917992 original size:26 final size:26
Alignment explanation
Indices: 14917963--14918015 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14917953 CTGGTCTGAT
*
14917963 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14917989 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14918015 C
1 C
14918016 CGAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14918499 original size:26 final size:26
Alignment explanation
Indices: 14918463--14918516 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14918453 CCAGTTCGAT
14918463 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14918489 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14918515 CT
1 CT
14918517 CAACTGACCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14919261 original size:159 final size:157
Alignment explanation
Indices: 14918836--14919282 Score: 468
Period size: 159 Copynumber: 2.8 Consensus size: 157
14918826 AACTCTGTAT
** * * *
14918836 GCTTAGACATGGAATGAACTCCGTAAACCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14918901 CCGATCGGAGAGGCAGAATGAGCAAGCCGAGGACCGACCCAGTCCCCCCTGCATGCTTTCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCGA-TCCCCCCTGCGTGCTATCGATCC
* *
14918966 TACTACCACAACCCTCAGTCCGATCTGA
130 CACTACCACAACCCTCAGTCCAATCTGA
* * * * * *
14918994 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * **
14919058 GCC-AGTCGGAGAGGCATAATACACAAGCCGGGGATCAGCCCGATCCCTCTTTGCGTGCTATCGA
65 GCCGA-TCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GGCCGATCCC-CCCTGCGTGCTATCGA
* * * *
14919122 TCCCACTGCCAGAACCCTCGGTCCAAT-TGGG
127 TCCCACTACCACAACCCTCAGTCCAATCT-GA
* * * *
14919153 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGGGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
14919218 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATTGGCTCGATCCCCCCTGCGTGCTACCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGC-CGATCCCCCCTGCGTGCTATCGATCC
14919283 TGCTGTCGCA
Statistics
Matches: 232, Mismatches: 49, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 103 0.44
159 125 0.54
160 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCGATCCCCCCTGCGTGCTATCGATCCC
ACTACCACAACCCTCAGTCCAATCTGA
Found at i:14920072 original size:26 final size:26
Alignment explanation
Indices: 14920033--14920085 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14920023 GGCTCAAACT
14920033 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14920059 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGCGAATGAACTCCGTATG
14920085 C
1 C
14920086 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:14920379 original size:158 final size:158
Alignment explanation
Indices: 14920058--14920392 Score: 374
Period size: 158 Copynumber: 2.1 Consensus size: 158
14920048 AACTCCGTAT
*
14920058 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*** * * * * * *
14920123 CCGGTCGGAGATGCAGAATACGCAAGTCGAGGATTAGCCTGGTCCCCCTTGTGTGCTGTCAGTCT
66 CCAACCGGAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAGTCT
* * * *
14920188 CGCTGCCACAACCCTCGGTCCGGCTGGG
131 CACTGCCACAACCCTCGGTCCGACTCGA
* * *
14920216 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAACG-GATGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * *
14920280 GCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-GAT
65 GCCAACCGGAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAG-T
* * *
14920344 C-CTACTGCCGCAACCCTTGGAT-CGATTCGA
129 CTC-ACTGCCACAACCCTCGG-TCCGACTCGA
*
14920374 TCTTAGAC-TGGGAATGAAC
1 GCTTAGACAT-GGAATGAAC
14920393 ATCATACGGT
Statistics
Matches: 148, Mismatches: 24, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
157 4 0.03
158 143 0.97
159 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAACCGGAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAGTCT
CACTGCCACAACCCTCGGTCCGACTCGA
Found at i:14920809 original size:159 final size:158
Alignment explanation
Indices: 14920610--14920919 Score: 383
Period size: 159 Copynumber: 2.0 Consensus size: 158
14920600 CTGATCCAAT
* * * *
14920610 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * **
14920675 C-AGCCGGAGAGGCACAATGCGCAA-GCTGGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCGAT
66 CGA-CCAGAGAGGCACAATGCGCAATAC-GGGGATCGGCCCGATCCCCCT-TACGTGCTGCCGAT
* *
14920738 CCTGCTGCCACAACCCTCGGTCCAGCTGGGG
128 CCTACTGCCACAACCCTCGATCCAGCTGGGG
* * *
14920769 CTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
14920833 CCGATCAGAGAGGTAGAATGCGCAATACGGGGATCTGCTCGGTCCCCCTTACGTGCTGCCGATCC
65 CCGACCAGAGAGGCACAATGCGCAATACGGGGATCGGCCCGATCCCCCTTACGTGCTGCCGATCC
*
14920898 TACTGCCGCAACCCTCGATCCA
130 TACTGCCACAACCCTCGATCCA
14920920 ATCCGATCTT
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
158 33 0.26
159 90 0.70
160 5 0.04
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGACCAGAGAGGCACAATGCGCAATACGGGGATCGGCCCGATCCCCCTTACGTGCTGCCGATCCT
ACTGCCACAACCCTCGATCCAGCTGGGG
Found at i:14921687 original size:26 final size:26
Alignment explanation
Indices: 14921649--14921698 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14921639 GGCTCAAACT
14921649 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
14921675 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
14921699 TGCCTAAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:14922526 original size:159 final size:156
Alignment explanation
Indices: 14922227--14923048 Score: 558
Period size: 159 Copynumber: 5.2 Consensus size: 156
14922217 ACCCTGTTTG
* * *
14922227 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14922292 TGGCCAGAGAGGTAGAATGCACAAGCCGGGGATCG-GCCAGGTCCCCTCCAGCATGCTGTC-GAT
66 TGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCA-GTCCCCTCTAG--TGCTGTCAG-T
* **
14922355 CATGCTATCACAACCCTCGGTCCGGTATGAT
127 CCTGCTGCCACAACCCTCGGTCCGGT-TGAT
* * * ** *
14922386 CTTAAACTTGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14922451 TAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTATGTGCTGCCAGTCC
66 TGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCAGT-CCCCTCTA-GTGCTGTCAGTCC
* * * * * **
14922516 CGTTGCCACAACCATCGATCCGGCTGGGG
129 TGCTGCCACAACCCTCGGTCCGG-TTGAT
* * * * * * *
14922545 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCAGGTGCTCAGA
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * ** * * * *
14922610 TGGTCGAAGATGCAAAATGCATAGGCCAGGGATCGATGCGGTCCCCTTTACGTGTTGTCAATCCT
66 TGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCAGTCCCCTCTA-GTGCTGTCAGTCCT
* ** *
14922675 ACTGCCTTAACCCTCGGTCCAGTCTGAT
130 GCTGCCACAACCCTCGGTCCGGT-TGAT
* * * * *
14922703 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCCACGAAACGAGCGTTCGGGCACTGAG
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAG-CCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
14922768 CCGACCGGAGAGGAATAATGCACAAGCTGGGGATCAACCCGGTCCCCTTCT-GCATACTG-CTGG
65 CTGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCAGTCCCC-TCTAG--TGCTGTC-AG
** * * * **
14922831 TCCCACTGGCACAACCCCCGGTCCGGCTGGGG
126 TCCTGCTGCCACAACCCTCGGTCCGG-TTGAT
* * * * * * *
14922863 CTCAGACATT-GAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGTGCTCAA
1 CTTAGAC-TTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * *
14922927 CTGACCGGAAGAGACAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTGTC-GAT
65 CTGGCCGG-AGAGGCATAATGCACAAGCCGGGGATCGACCCAGTCCCCTCT-AGTGCTGTCAG-T
* ** ** *
14922991 CCTACTGCTGCAACCCTCCATCCAGTCTGAT
127 CCTGCTGCCACAACCCTCGGTCCGGT-TGAT
**
14923022 CTTAGACTACGAATGAACTCCGTATGC
1 CTTAGACTTGGAATGAACTCCGTATGC
14923049 TTAGACTGGG
Statistics
Matches: 499, Mismatches: 144, Indels: 40
0.73 0.21 0.06
Matches are distributed among these distances:
157 1 0.00
158 66 0.13
159 330 0.66
160 98 0.20
161 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCAGTCCCCTCTAGTGCTGTCAGTCCTG
CTGCCACAACCCTCGGTCCGGTTGAT
Found at i:14922846 original size:318 final size:313
Alignment explanation
Indices: 14922226--14923048 Score: 880
Period size: 318 Copynumber: 2.6 Consensus size: 313
14922216 AACCCTGTTT
* * *
14922226 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGTGCTCAG
* * * * *
14922291 CTGGCCAGAGAGGTAGAATGCACAAGCCGGGGATCG-GCCAGGTCCCCTCCAGCATGCTGTCGAT
65 ATGGCGA-AGA-GCAGAATGCACAAGCCGGGGATCGAG-CAGGTCCCCTCTA-CGTGCTGTCGAT
* * * * * * * * *
14922355 CATGCTATCACAACCCTCGGTCCGGTATGATCTTAAACTTGGAATGAACTCTGTATGCCTAAGTC
126 CCTACT-GCTCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
14922420 AACCCATAAAACGAGCGTGCGGGCGCTGAGCTAGTCGGAGAGGCATAATGCGCAAGCCGGGGATC
190 AACCCACAAAACGAGCGTGCGGGCACTGAGCGAGCCGGAGAGGAATAATGCACAAGCCGGGGATC
* ** * ** *
14922485 GACCCAGTCCCCCTCTATGTGCTGCCAGTCCCGTTGCCACAACCATCGATCCGGCTGGG
255 AACCCAGTCCCCCTCTACATACTGCCAGTCCCACTGCCACAACCACCGATCCGGCTGGG
*
14922544 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGTGCTCAG
* * * * * * *
14922609 ATGGTCGAAGATGCAAAATGCATAGGCCAGGGATCGATGC-GGTCCCCTTTACGTGTTGTCAATC
65 ATGG-CGAAGA-GCAGAATGCACAAGCCGGGGATCGA-GCAGGTCCCCTCTACGTGCTGTCGATC
* *
14922673 CTACTGCCTTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
127 CTACTG-CTCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC-
* * *
14922738 AACCCACGAAACGAGCGTTCGGGCACTGAGCCGA-CCGGAGAGGAATAATGCACAAGCTGGGGAT
190 AACCCACAAAACGAGCGTGCGGGCACTGAG-CGAGCCGGAGAGGAATAATGCACAAGCCGGGGAT
* * * ** * * *
14922802 CAACCCGGTCCCCTTCTGCATACTGCTGGTCCCACTGGCACAACCCCCGGTCCGGCTGGG
254 CAACCCAGTCCCCCTCTACATACTGCCAGTCCCACTGCCACAACCACCGATCCGGCTGGG
* * *
14922862 GCTCAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGTGCTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCG-GTGCTCAG
* * * * * *
14922926 ACTGACCGGAAGAGACAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGAT
65 A-TG-GC-GAAGAG-CAGAATGCACAAGCCGGGGATCGAGCAGGTCCCCTCTACGTGCTGTCGAT
** *
14922991 CCTACTGCTGCAACCCTCCATCCAGTCTGATCTTAGACTACGAATGAACTCCGTATGC
126 CCTACTGCT-CAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
14923049 TTAGACTGGG
Statistics
Matches: 419, Mismatches: 73, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
317 65 0.16
318 256 0.61
319 97 0.23
320 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (313 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGTGCTCAGA
TGGCGAAGAGCAGAATGCACAAGCCGGGGATCGAGCAGGTCCCCTCTACGTGCTGTCGATCCTAC
TGCTCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
CAAAACGAGCGTGCGGGCACTGAGCGAGCCGGAGAGGAATAATGCACAAGCCGGGGATCAACCCA
GTCCCCCTCTACATACTGCCAGTCCCACTGCCACAACCACCGATCCGGCTGGG
Found at i:14923390 original size:26 final size:26
Alignment explanation
Indices: 14923340--14923390 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14923330 TGGTCTGATC
**
14923340 TTAGACTGGAAATGAACTCTGTATGG
1 TTAGACTGGAAATGAACTCCATATGG
14923366 TTAGACATGG-AATGAACTCCATATG
1 TTAGAC-TGGAAATGAACTCCATATG
14923391 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCATATGG
Found at i:14923889 original size:26 final size:26
Alignment explanation
Indices: 14923851--14923903 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14923841 CCGGTCCCAT
14923851 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14923877 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
14923903 C
1 C
14923904 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14924178 original size:159 final size:159
Alignment explanation
Indices: 14923877--14924372 Score: 353
Period size: 159 Copynumber: 3.1 Consensus size: 159
14923867 ACTCTGTATG
* * *
14923877 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTGTAGGCCTAAGCCAACCCACAAAACGAGCATACGGGCACTCAGC
* * * * * *
14923942 GTGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCCTTCGTGCTGTCGATCC
66 GTGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCAATCCCACCCTACGTGCTGTCGATCC
* * *
14924007 TGCTATCGCAACCCTCAGTTTGGTCCGAT
131 CGCTACCACAACCCTCAGTTTGGTCCGAT
* * * * * *
14924036 CTTAGAC-TGGAAATGAACT-TCGTAGGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCACTGA
1 CTTAGACATGG-AATGAACTCT-GTAGGCCTAAGCCAACCCACAAAACGAGCATACGGGCACTCA
* * * * *
14924099 GCCG-GCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAATCCCACTCTACGTGCTGTCGG
64 G-CGTGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCAATCCCACCCTACGTGCTGTCGA
* ** * **
14924163 TCCCGCTGCCACAACCCTC-GATCCGG-CTGGGG
128 TCCCGCTACCACAACCCTCAG-TTTGGTC-CGAT
* ** * * * * **
14924195 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCTGTAGGCCTAAGCCAACCCACAAAACGAGCATACGGGCACTCAG-
* ** * * * ** * *
14924260 CGAT--CGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCC-TCCTATGTGCTGTCGAT
65 CG-TGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCAATCCCACCCTACGTGCTGTCGAT
* ** * * **
14924322 CCTGCTGTCGCAACCCTCGGTCCGGTCCGAT
129 CCCGCTACCACAACCCTCAGTTTGGTCCGAT
*
14924353 CTTAGAC-TGGGAACGAACTC
1 CTTAGACAT-GGAATGAACTC
14924373 CGTATGCTTA
Statistics
Matches: 264, Mismatches: 61, Indels: 25
0.75 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 56 0.21
159 202 0.77
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCTGTAGGCCTAAGCCAACCCACAAAACGAGCATACGGGCACTCAGC
GTGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCAATCCCACCCTACGTGCTGTCGATCC
CGCTACCACAACCCTCAGTTTGGTCCGAT
Found at i:14924274 original size:513 final size:498
Alignment explanation
Indices: 14923306--14924555 Score: 1518
Period size: 513 Copynumber: 2.5 Consensus size: 498
14923296 CATGCTGCCA
* * * * * *
14923306 ATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGAAATGAACTCTGTATGGTTAGA
1 ATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * *
14923371 CATGGAATGAACTCCATATGCCTAAGCCAACCTACGAAACGAGAGTGTGGGCGCTTAGTCGATCG
66 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGA-TGCGGGCGCTCAG-CG-TCG
* * * * *
14923436 GAGAGCCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTTGATCCTGCTGTC
128 GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATC
* * * * *
14923501 GCAACCCTC-GATTTGGTCTGATCTTAGATTGGGAATGAACTTTGTATGCTTAAGTAAACCCACG
193 GCAACCCTCAG-TTTGGTCCGATCTTAGATTGGGAATGAACTTCGTAGGCCTAAGTAAACCCACA
** * * * * *
14923565 AAATGAGCGTGCGGGCGTTGAACGGGCCGAAGAGGCATAATTCGCAAGCCTAGGATTGGCCCGAT
257 AAATGAGCGTGCGGGCACTGAACCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAAT
* * * *
14923630 CCCCCTCTGCGTGCTATCAATCCAGCTGCCATAACACTCAGTCTGGCTGGGGCTTAGACATGGAA
322 CCCACTCTACGTGCTATCAATCCAGCTGCCACAACACTCAGTCCGGCTGGGGCTTAGACATGGAA
* *** * *
14923695 TGAACTCCCTATGCCCAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGTCGATCAGAGAGGC
387 TGAACTCCCTATGCCCAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGATCAGAGAGGC
* *
14923760 AGAATACGTAAGTCGGGGATCGACCCGATCCCTCCTACGTGCTGTTG
452 AGAATACGCAAGTCGGGGATCGACCCGATCCCTCCTACGTGCTGTCG
* *
14923807 CTCCGGCTGCTAGTCCTGCTACACAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCT
1 AT-C--CTGCT-GT-C-G-----CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT
* *
14923872 GTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGC
55 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-ATGCGGGCGC
** *
14923937 TCAGCGTGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCCTTCGTGCTGTC
119 TCAGCGT--CGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCCCTGCGTGCTGTC
* *
14924002 GATCCTGCTATCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGAAATGAACTTCGTAGGCCTAA
181 GATCCTGCTATCGCAACCCTCAGTTTGGTCCGATCTTAGATTGGGAATGAACTTCGTAGGCCTAA
* * *
14924067 GTCAACCCATAAAATGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGAGG
246 GTAAACCCACAAAATGAGCGTGCGGGCACTGAACCGGCCGAAGAGGCATAATGCGCAAGCCGAGG
* ** * *
14924132 ATCGGCCCAATCCCACTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTC-GATCCGGCTGGGGC
311 ATCGGCCCAATCCCACTCTACGTGCTATCAATCCAGCTGCCACAACACTCAG-TCCGGCTGGGGC
* *
14924196 TTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCC
375 TTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCC
* ** * * *
14924261 GATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCCTCCTATGTGCTGTCG
440 GATCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGATCCCTCCTACGTGCTGTCG
* * *
14924320 ATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCGTATGCTTACA
1 ATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * * * * * *
14924385 C-TGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTCAACCAATC
66 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-ATGCGGGCGCTC-AGC-GTC
* * *
14924449 GGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGGTCCTGCTA-
127 GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTAT
** *
14924513 CTGCAACCCTCAGTCCGGTTCGATCTTAGATTGGGAATGAACT
192 C-GCAACCCTCAGTTTGGTCCGATCTTAGATTGGGAATGAACT
14924556 CTGTATGCTT
Statistics
Matches: 637, Mismatches: 91, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
500 1 0.00
501 62 0.10
502 130 0.20
503 2 0.00
504 6 0.01
505 1 0.00
506 1 0.00
507 2 0.00
508 1 0.00
509 2 0.00
510 6 0.01
511 2 0.00
512 132 0.21
513 288 0.45
514 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (498 bp):
ATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGATGCGGGCGCTCAGCGTCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCA
ACCCTCAGTTTGGTCCGATCTTAGATTGGGAATGAACTTCGTAGGCCTAAGTAAACCCACAAAAT
GAGCGTGCGGGCACTGAACCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAATCCCA
CTCTACGTGCTATCAATCCAGCTGCCACAACACTCAGTCCGGCTGGGGCTTAGACATGGAATGAA
CTCCCTATGCCCAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGATCAGAGAGGCAGAA
TACGCAAGTCGGGGATCGACCCGATCCCTCCTACGTGCTGTCG
Found at i:14924382 original size:26 final size:26
Alignment explanation
Indices: 14924353--14924408 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14924343 CCGGTCCGAT
*
14924353 CTTAGACTGGGAACGAACTCCGTATG
1 CTTACACTGGGAACGAACTCCGTATG
* *
14924379 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAACGAACTCCGTATG
14924405 CTTA
1 CTTA
14924409 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAACGAACTCCGTATG
Found at i:14924573 original size:26 final size:26
Alignment explanation
Indices: 14924537--14924592 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14924527 CCGGTTCGAT
* *
14924537 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14924563 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14924589 CTTA
1 CTTA
14924593 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14924740 original size:184 final size:183
Alignment explanation
Indices: 14924210--14924743 Score: 721
Period size: 184 Copynumber: 2.9 Consensus size: 183
14924200 ACATGGAATT
* * * * * *
14924210 AACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCC-GATCGGAGAGGCA
1 AACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-TCGGAGAGGCA
* * *
14924274 GAATGTGCAAGTCGGGGATCGGCCCGGTCCCTCCTATGTGCTGTCGATCCTGCTGTCGCAACCCT
65 GAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCT-ACGCAACCCT
* * * *
14924339 CGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCGTATGCTTACACTGGGGATG
129 CGATCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTACACTGGGGATG
* * * * *
14924394 AACTCCGTATGCTTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTCAACCAATCGGAGAGGCAG
1 AACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAG
* * * * * *
14924459 AATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGGTCCTGCTACTGCAACCCTC
66 AATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTAC-GCAACCCTC
* *
14924524 -AGTCCGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATG
130 GA-TCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTACACTGGGGATG
*
14924578 AACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTTGGAGAGGCAG
1 AACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAG
*
14924643 AATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTACAGCAACCCTC
66 AATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTAC-GCAACCCTC
* * * *
14924708 GATTCGGTCCGATCTTAGTTTAGGAGTGAACTCTGT
130 GATCCGGTCCGATCTTAGATTGGGAATGAACTCTGT
14924744 TGCCTAAGTG
Statistics
Matches: 301, Mismatches: 45, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.00
184 299 0.99
185 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (183 bp):
AACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAG
AATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACGCAACCCTCG
ATCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTACACTGGGGATG
Found at i:14925073 original size:26 final size:26
Alignment explanation
Indices: 14925037--14925089 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14925027 CCAATTCGAT
*
14925037 CTTAGACT-GGGATTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCATATG
14925063 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
14925089 C
1 C
14925090 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:14925140 original size:684 final size:693
Alignment explanation
Indices: 14923681--14925140 Score: 1797
Period size: 684 Copynumber: 2.1 Consensus size: 693
14923671 TCTGGCTGGG
* * * * *
14923681 GCTTAGACAT-GGAATGAACTCCCTATGCCCAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCA
** * *
14923745 GTCGATCAGAGAGGCAGAATACGTAAGTCGGGGATCGACCCGATCCCTCCTACGTGCTGTTGCTC
65 ACCGATCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGATCCCTCC-ACGTGC-GATGCT-
*
14923810 CGGCTGCTAGTCCTGCTACACAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCTGTA
127 C-GCTGCTAGTCCTGCTACACAACCCTCAGTCCGGTCCCATCTTAGACTGGGAATGAACTCTGTA
*
14923875 TGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCA
191 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCA
** * * *
14923940 GCGTGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCCTTCGTGCTGTCGAT
256 GCCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTACGTGCTATCGAT
*
14924005 CCTGCTATCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGAAATGAACTTCGTAGGCCTAAGTC
321 CCTGCTATCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGAAATGAACTTCGTAGGCCTAAGTC
* * * *
14924070 AACCCATAAAATGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATC
386 AACCCACAAAACGAGCGTGCGAGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATC
* * * *
14924135 GGCCCAATCCCACTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAG
451 GGCCCAATCCCACTCTACATGCTGTCGATCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAG
* * * *
14924200 ACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGATC
516 ACATGGAATGAAATCCCTATGCATAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGATC
* ** * * * * * ***
14924265 GGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCCTCCTATGTGCTGTCGATCCTGCTGT
581 GAAGAGGCAGAATACGCAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTACCAC
* **
14924330 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCGTAT
646 CGCAACCCTCGATCCAATCCGATCTTAGACTGGGAACGAACTCCGTAT
* * * * * * *
14924378 GCTTACACTGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTCAA
1 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAA
* * *
14924443 CCAATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCC-CC-C-TGC-ATGCT-G-T
66 CCGATCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGATCCCTCCACGTGCGATGCTCGCT
* * * * *
14924502 -C-GGTCCTGCTACTGCAACCCTCAGTCCGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCT
131 GCTAGTCCTGCTAC-ACAACCCTCAGTCCGGTCCCATCTTAGACTGGGAATGAACTCTGTATGCT
* * * * *
14924565 TAGAC-TGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
195 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCC
** ** * * *
14924629 AGTTGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGT-CCCCCCTACGTGCTATCGATCCT
259 AGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTACGTGCTATCGATCCT
** * *
14924693 GCTA-CAGCAACCCTC-GATTCGGTCCGATCTTAGTTTAGG-AGTGAAC-TCTGT-TGCCTAAGT
324 GCTATC-GCAACCCTCAG-TTCGGTCCGATCTTAGACT-GGAAATGAACTTC-GTAGGCCTAAGT
* * * * * *
14924753 GAACCCACGAAACGAGCGTTCGAGCGA-TGAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGA
385 CAACCCACAAAACGAGCGTGCGAGC-ACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGA
** * * *
14924817 TCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCCACTGCCACAACCCTC-AGTCTGACTGGGGCT
449 TCGGCCCAATCCCACTCTACATGCTGTCGATCCCACTGCCACAACCCTCGA-TCCGACTGGGGCT
** *
14924881 TAGACATGGAATGAAATCCCTATGCATAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCG
513 TAGACATGGAATGAAATCCCTATGCATAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAGCCG
* *
14924946 ATCGAAGAGGCAGAATACGCAAG-CTGAGGATCGGCCTGGTCCCCCCTGCGTGCTATCGATCCTA
578 ATCGAAGAGGCAGAATACGCAAGTC-GAGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTA
* **
14925010 CCACCGCAACCCTCGATCCAATTCGATCTTAGACTGGGATTGAACTCCGTAT
642 CCACCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAACGAACTCCGTAT
* *
14925062 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAA
1 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAA
*
14925127 CCGACCAGAGAGGC
66 CCGATCAGAGAGGC
14925141 CAACCGAAGA
Statistics
Matches: 649, Mismatches: 104, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
683 2 0.00
684 337 0.52
685 70 0.11
686 135 0.21
687 1 0.00
688 1 0.00
691 4 0.01
693 3 0.00
694 1 0.00
696 3 0.00
697 92 0.14
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (693 bp):
GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAA
CCGATCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGATCCCTCCACGTGCGATGCTCGCT
GCTAGTCCTGCTACACAACCCTCAGTCCGGTCCCATCTTAGACTGGGAATGAACTCTGTATGCTT
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCAG
CCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTACGTGCTATCGATCCTGC
TATCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGAAATGAACTTCGTAGGCCTAAGTCAACCC
ACAAAACGAGCGTGCGAGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCC
AATCCCACTCTACATGCTGTCGATCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATG
GAATGAAATCCCTATGCATAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGATCGAAGA
GGCAGAATACGCAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTACCACCGCAA
CCCTCGATCCAATCCGATCTTAGACTGGGAACGAACTCCGTAT
Found at i:14925857 original size:26 final size:26
Alignment explanation
Indices: 14925819--14925871 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14925809 GGCTCAAACT
14925819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14925845 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14925871 C
1 C
14925872 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14926581 original size:26 final size:26
Alignment explanation
Indices: 14926530--14926582 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14926520 CCGGTCTGAT
**
14926530 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCATATG
14926556 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14926582 C
1 C
14926583 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14927056 original size:158 final size:157
Alignment explanation
Indices: 14926556--14927048 Score: 462
Period size: 158 Copynumber: 3.1 Consensus size: 157
14926546 ACTCTTTATG
* * * * *
14926556 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACTGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAGC
* * * * * * * * *
14926621 CGACTGAAGAGGCAGAATGCGCAAGCTG-GGTACCGACCCGGTCCCCCCTGTGTGCTATCGATCC
66 CGACCGGAGAGGTAGAATGCGCAAGCCGAGG-ATCGGCCCGATCCCCCCTGTGTGCTGTCGATTC
*
14926685 TACTGCTGCAACCCTCGATCCGGTTCGAT
130 TACTGC-GCAACCCTCGATCCAGTTCGAT
* * ** * * * *
14926714 CTCAGAC-TGGGAATGAACTTCGTATGCCTAAATCAACCCACAAAATGAGTGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAG
* * * * * * *
14926778 CCGATCGGAGAGGCT-TAATGAGCAAGTC-AGGGATCGGTCCGATCCCCCTCTGTGTGCTGCCGG
65 CCGACCGGAGAGG-TAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCC-CTGTGTGCTGTCGA
* * * **
14926841 TTCTACTGCCACAACCC-C-AGTTCAGTTGGGG
127 TTCTACTG-CGCAACCCTCGA-TCCAGTTCGAT
* *
14926872 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTATGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAGC
* * *
14926937 CGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCTCCTGCGTGCTGTCGATTTT
66 CGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATTCT
*
14927002 GCTGTCGCAACCCTCGATCCAG-TCTGAT
131 ACTG-CGCAACCCTCGATCCAGTTC-GAT
14927030 CTTAGAC-TGGAAATGAACT
1 CTTAGACATGG-AATGAACT
14927049 TTGTATGCTT
Statistics
Matches: 259, Mismatches: 62, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
157 31 0.12
158 198 0.76
159 29 0.11
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAGC
CGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATTCT
ACTGCGCAACCCTCGATCCAGTTCGAT
Found at i:14927071 original size:26 final size:26
Alignment explanation
Indices: 14927030--14927082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14927020 CCAGTCTGAT
*
14927030 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
**
14927056 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
14927082 C
1 C
14927083 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:14928138 original size:26 final size:26
Alignment explanation
Indices: 14928102--14928154 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14928092 TTGGTTTAAT
14928102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14928128 CTTAGATTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14928154 C
1 C
14928155 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14929510 original size:26 final size:26
Alignment explanation
Indices: 14929474--14929526 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14929464 CCAGTTCCAT
*
14929474 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATCAACTCCGTATG
14929500 CTTAGACTAGGGATCAACTCCGTATG
1 CTTAGACTAGGGATCAACTCCGTATG
14929526 C
1 C
14929527 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATCAACTCCGTATG
Found at i:14930244 original size:26 final size:26
Alignment explanation
Indices: 14930206--14930258 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14930196 GGCTGAAACT
14930206 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
14930232 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
14930258 C
1 C
14930259 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14930788 original size:26 final size:26
Alignment explanation
Indices: 14930759--14930815 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14930749 TCGATCTGAT
* * *
14930759 CTTAGACTTGGAATGGACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
14930785 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14930811 CTTAG
1 CTTAG
14930816 GCCAACCCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14930816 original size:26 final size:26
Alignment explanation
Indices: 14930767--14930817 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14930757 ATCTTAGACT
* *
14930767 TGGAATGGACTCTGTATGCTTAGGCA
1 TGGAATGAACTCCGTATGCTTAGGCA
14930793 TGGAATGAACTCCGTATGCTTAGGC
1 TGGAATGAACTCCGTATGCTTAGGC
14930818 CAACCCACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
TGGAATGAACTCCGTATGCTTAGGCA
Found at i:14931051 original size:158 final size:159
Alignment explanation
Indices: 14930856--14931153 Score: 359
Period size: 159 Copynumber: 1.9 Consensus size: 159
14930846 CAGCCGATCA
* * **
14930856 GAGAGGCACAATGCGCAAGCCAGGGACCGAATCGGTCCCTC-CTACGTGCTATCGATCTTGCTGC
1 GAGAGGCACAATGCGCAAGCCAGGGACCGAACCGGTCCCCCTCTACGTGCTATCGATCCCGCTGC
** * * * * * * *
14930920 TGCAACCCTC-AGTCTG-GTCCGATCTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCA
66 CACAACCCTCGA-TCTGACT-CGAGCTTAAAAAGGGAATGAACTCCCTATGCCTAAGCCAACCCA
14930983 TGAAACAAGCGTTTGGGTGCTGAGCTGGTTG
129 TGAAACAAGCGTTTGGGTGCTGAGCTGGTTG
* * * * * *
14931014 GAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGC
1 GAGAGGCACAATGCGCAAGCCAGGGACCGAACCGGTCCCCCTCTACGTGCTATCGATCCCGCTGC
* * *
14931079 CACAACCCTCGATCTGACTGGGGCTTAAAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
66 CACAACCCTCGATCTGACTCGAGCTTAAAAAGGGAATGAACTCCCTATGCCTAAGCCAACCCATG
14931144 AAACAAGCGT
131 AAACAAGCGT
14931154 ACGGGCGATC
Statistics
Matches: 115, Mismatches: 22, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
158 35 0.30
159 78 0.68
160 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GAGAGGCACAATGCGCAAGCCAGGGACCGAACCGGTCCCCCTCTACGTGCTATCGATCCCGCTGC
CACAACCCTCGATCTGACTCGAGCTTAAAAAGGGAATGAACTCCCTATGCCTAAGCCAACCCATG
AAACAAGCGTTTGGGTGCTGAGCTGGTTG
Found at i:14931296 original size:26 final size:26
Alignment explanation
Indices: 14931260--14931312 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14931250 TCGATTCGAT
14931260 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTAGACTGGGAATGAACTTC-ATATG
* *
14931286 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
14931312 C
1 C
14931313 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:14932696 original size:184 final size:183
Alignment explanation
Indices: 14932373--14932952 Score: 719
Period size: 184 Copynumber: 3.2 Consensus size: 183
14932363 TGGCTCAAAC
* * *
14932373 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGCATGAACTCTGTATGCCTGAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAG-ACTGGAATGAACTCTGTATGCCTAAGCCAACC
* * * * * *
14932438 CACAAAATGAGCGTGCGGGCGCTCAGTCGGTCAGAGAGGCAGAATGCGCAAGTCGAGGATCGGCC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACC
* * * * ** *
14932503 CAATCCCCCCTGCATGCTACCGATCCTGCTGTCGTAACCCTCAATCCGGTTTGA
130 CAGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGA
* * * * *
14932557 TCTTACACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACC
* * * *
14932622 CACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGTATGCGTAAGCCGGGGATCAACC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACC
* * * * *
14932687 CAGTCCCCCCTATGTGCTGCCAATCCTGCTGTCGCAAGCCTCGGTCCGGACTGA
130 CAGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGA
*
14932741 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACC
* * * * * *
14932806 CACGAAACGAGCGTGCGGGTGCTCAGCCGATTGGAGAGGCAGAATGAGCAAGTTGGGGACCGACC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACC
** * * ** * *
14932871 TGGTCCCCCCTACGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCTGGTCCGA
130 CAGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGA
*
14932925 TCTTAGACTGGGAATGAACTTCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
14932953 CTAAGTCAAT
Statistics
Matches: 335, Mismatches: 59, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
183 2 0.01
184 332 0.99
185 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (183 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCC
AGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGA
Found at i:14932793 original size:26 final size:26
Alignment explanation
Indices: 14932742--14932794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14932732 CCGGACTGAT
*
14932742 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14932768 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14932794 C
1 C
14932795 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14933115 original size:159 final size:158
Alignment explanation
Indices: 14932767--14933269 Score: 491
Period size: 158 Copynumber: 3.2 Consensus size: 158
14932757 AACTCCGTAT
* * *
14932767 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCT-AA
* ** * * * *
14932832 CCGATTGGAGAGGCAGAATG-AGCAAGTTGGGGACCGAC-CTGGTCCCCC-CTACGTGCTGTCGA
65 CCGATCGGAGAGGCAGAATGCA-CAAGCCGGGGATCGGCTC-GGTCCCCCTCTGCATGCTGTCGA
* * * *
14932894 TCTTGCTACCGTAACCCTCGGTCTGGTCCGA
128 TCTTGCTGCCATAACCCTCGGTCCGCTCCGA
* * * * * * *
14932925 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAATCCACGAAATGAGCGTTCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTAA
* * *
14932989 CCCGATCGGAGAGGCATAATGCACAAGCCGAGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGGT
65 -CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGAT
* * * *
14933054 CTTGCTGCCACAACCCTCAGTTCCGCT-GGG
129 CTTGCTGCCATAACCCTC-GGTCCGCTCCGA
* * *
14933084 GCTTAGTCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCT-AA
* * * * * *
14933149 CCGACCGAAGAGGTAGAATGCACAAGCCGGGGATC-GATCCGATCCCCCT-TGTATGCTGTCGAT
65 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCT-CGGTCCCCCTCTGCATGCTGTCGAT
* * * *
14933212 CCTGCTGCCATAACCCACGATCCGATCCGA
129 CTTGCTGCCATAACCCTCGGTCCGCTCCGA
*
14933242 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
14933270 TTAGACAAGG
Statistics
Matches: 279, Mismatches: 55, Indels: 22
0.78 0.15 0.06
Matches are distributed among these distances:
157 9 0.03
158 142 0.51
159 120 0.43
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTAAC
CGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGATCT
TGCTGCCATAACCCTCGGTCCGCTCCGA
Found at i:14933648 original size:26 final size:26
Alignment explanation
Indices: 14933612--14933664 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14933602 CCAGTTCGAT
14933612 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
14933638 CTTAGACTGGGGATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTATATG
14933664 C
1 C
14933665 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:14933852 original size:26 final size:26
Alignment explanation
Indices: 14933814--14933866 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14933804 GGCTCAAACT
14933814 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14933840 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14933866 C
1 C
14933867 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14934843 original size:26 final size:26
Alignment explanation
Indices: 14934814--14934865 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14934804 TCTGGCCTGA
14934814 TCTTAAACTGGGAATAAACTCCATAT
1 TCTTAAACTGGGAATAAACTCCATAT
* * *
14934840 TCTTAGACTGGGGATGAACTCCATAT
1 TCTTAAACTGGGAATAAACTCCATAT
14934866 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (26 bp):
TCTTAAACTGGGAATAAACTCCATAT
Found at i:14935220 original size:26 final size:26
Alignment explanation
Indices: 14935182--14935234 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14935172 CCGATCCAAT
*
14935182 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14935208 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14935234 C
1 C
14935235 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14935464 original size:158 final size:157
Alignment explanation
Indices: 14935208--14935709 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 157
14935198 ACTCTGTATG
* * * *
14935208 CTTAGACAT-GGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* * **
14935272 CCGACCGGAGAGGTAGAATGCACAAGCCAAGGATCGGCCCGGTCCCCCTTACGTGCTATCGATCC
65 CCGACCGGAGAGG-CGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTTGTGTGCTATCGATCC
* * * *
14935337 TACTGCCACAACCCTTAGTCTACCCTGAT
129 AACTGCCACAACCCTCAGTCTAGCCTGAC
* * * * *
14935366 CTTAGATTGGGAATGAACTCCGTATGCCTGAGTCAACCCATGAAACGAGCGTGCGGGAGTTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
* * ** * *
14935431 CTG-CCGGAGAGGCGTAATGCGCAAGCCGGGGATCAACCCGATCCCTCTCTGTGTGCTATCGATC
66 C-GACCGGAGAGGCG-AATGCACAAGCCGAGGATCGGCCCGGTCCCCCT-TGTGTGCTATCGATC
** * * **
14935495 CCGCTGCCACAACCCTCAGTCCAGCTTGGG
128 CAACTGCCACAACCCTCAGTCTAGCCTGAC
* * * * *
14935525 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* * *
14935589 CCGACTGGAGAGGCAGAACGCCCAAGCCGAGGATCAGG-CCGGTCCCCCTTGTGTGCTATCGATC
65 CCGACCGGAGAGGC-GAATGCACAAGCCGAGGATC-GGCCCGGTCCCCCTTGTGTGCTATCGATC
* * * *
14935653 CAACTGCTACAACCCTCGGTCTGGTCTGAC
128 CAACTGCCACAACCCTCAGTCTAGCCTGAC
* *
14935683 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
14935710 TTAGACTGTG
Statistics
Matches: 278, Mismatches: 57, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 149 0.54
159 124 0.45
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
CGACCGGAGAGGCGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTTGTGTGCTATCGATCCAA
CTGCCACAACCCTCAGTCTAGCCTGAC
Found at i:14936813 original size:26 final size:26
Alignment explanation
Indices: 14936763--14936815 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14936753 TCAATTTGAT
*
14936763 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
14936789 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
14936815 C
1 C
14936816 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14938234 original size:26 final size:26
Alignment explanation
Indices: 14938196--14938248 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14938186 GGCTCAAACT
14938196 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14938222 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14938248 C
1 C
14938249 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14943413 original size:26 final size:26
Alignment explanation
Indices: 14943372--14943424 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14943362 CAGTTTCGAT
14943372 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14943398 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14943424 C
1 C
14943425 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14943895 original size:159 final size:159
Alignment explanation
Indices: 14943594--14944045 Score: 457
Period size: 159 Copynumber: 2.8 Consensus size: 159
14943584 ACTCCGTATA
14943594 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * ** *
14943659 CGGCCGGAGAGGCAGAATGCACAAGCTGGGGATAGGTCCGGTCTCCCCCTGCGTGCTGTCGATCT
66 CAGCCGAAGAGGCAGAATACACAAGCCGGGGATAGGCCCGGTCTCCCCCTACGTGCTACCGATCC
* * * *
14943724 AGCTGTCGCAACCCTAGGTCTGGTCT-GAT
131 AGCTGCCACAACCCTAGGTCCGGT-TGGAG
* * * *
14943753 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14943817 -CTAGCCGAAGAGGCATAATACGCAAGCCGGGGATCGGCCCGGTC-CCCTTCTATGTGCTACCGG
65 TC-AGCCGAAGAGGCAGAATACACAAGCCGGGGATAGGCCCGGTCTCCC-CCTACGTGCTACCGA
* * * *
14943880 TCCCGTTGCCACAACCCTCGGTCCGGTTGGGG
128 TCCAGCTGCCACAACCCTAGGTCCGGTTGGAG
* * * *
14943912 CTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * * *
14943977 CAGTCGGATAGGCAGAATGCATAAGCCGGGGATTA-GCCCGGTC-CCTCATACGTGCTATCGATC
66 CAGCCGAAGAGGCAGAATACACAAGCCGGGGA-TAGGCCCGGTCTCCCCCTACGTGCTACCGATC
*
14944040 CTGCTG
130 CAGCTG
14944046 TCGTAACCTT
Statistics
Matches: 235, Mismatches: 51, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
158 22 0.09
159 210 0.89
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CAGCCGAAGAGGCAGAATACACAAGCCGGGGATAGGCCCGGTCTCCCCCTACGTGCTACCGATCC
AGCTGCCACAACCCTAGGTCCGGTTGGAG
Found at i:14944475 original size:26 final size:26
Alignment explanation
Indices: 14944437--14944489 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14944427 CCGATCCGAT
*
14944437 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14944463 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14944489 C
1 C
14944490 CTAAACAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14944601 original size:196 final size:196
Alignment explanation
Indices: 14944266--14944771 Score: 642
Period size: 196 Copynumber: 2.6 Consensus size: 196
14944256 TCTGACTGGG
* *
14944266 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * *
14944331 CCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTGTCAATCC
66 CCGACTGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGTCAATCC
* * **
14944396 TGCTGCTGGTCCTACTACCGCAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCTGT
131 TGCTGCTGGTCCTACTACCGCAACCCTCAGTCCAG-TCCAATCTTAGACTGGGAATGAACTCCAT
14944460 AT
195 AT
* * *
14944462 GCTTAGACATGGAATGAACTCCGTATGCCTAA-ACAACCCATGAAACAAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* ** * * ** *
14944526 CCGACTGGAGAGGCAGAATGCATAAGCCGGGGACCGGTCCGGTCCTCCTCTGTGTGCTGTCGATC
66 CCGACTGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCC-CCCCTACGTGCTGTCAATC
* ** * *
14944591 CTGTTGCTGGTCCTACTGTCGCAACCCTTAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCAT
130 CTGCTGCTGGTCCTACTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCAT
14944656 AT
195 AT
* * *
14944658 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAA-CGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CAAGCGTGCGGGCACTCA
* ** * *
14944722 GCCGA-TCGGAGAGGCAGAACGTGCAAGCCGAGGATCGACCCGATCCCCCC
65 GCCGACT-GGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCC
14944772 CTGCATGCTA
Statistics
Matches: 263, Mismatches: 42, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
195 64 0.24
196 138 0.52
197 59 0.22
198 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
CCGACTGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGTCAATCC
TGCTGCTGGTCCTACTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATA
T
Found at i:14944953 original size:159 final size:159
Alignment explanation
Indices: 14944659--14945155 Score: 558
Period size: 159 Copynumber: 3.1 Consensus size: 159
14944649 ACTCCATATG
* * *
14944659 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * * * *
14944724 CGATCGGAGAGGCAGAACGTGCAAGCCGAGGATCGACCC-GATCCCCCCCTGCATGCTACCGATC
66 TGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAG-TCCCCCTCTGCATGCTACCGATC
*
14944788 CTGCTGCTACAACCCTCAGTCCGGTCCGAT
130 CTGCTGCTACAACCCTCGGTCCGGTCCGAT
*
14944818 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * **
14944882 TTGACCGGAGAGGCATAATGCGCAAGCAGGGGATCGACCCAGTCCCCTTCTGTGTGCTACC-AGT
65 CTGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGCATGCTACCGA-T
* * * * * **
14944946 CCCGCTGCCACAACCCTCGGT-CTGACTGGGG
129 CCTGCTGCTACAACCCTCGGTCCGGTC-CGAT
* * * * *
14944977 CTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* ** * **
14945042 TGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCACTCCCCCT-TGCATGCTGTCGATCC
66 TGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGCATGCTACCGATCC
* *
14945106 TGCT-ATCGCAACCCTCGGTCCGGTCCGAT
131 TGCTGCT-ACAACCCTCGGTCCGGTCCGAT
14945135 CTTAGAC-TGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
14945156 ATATCTTAGA
Statistics
Matches: 277, Mismatches: 52, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 48 0.17
159 226 0.82
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
TGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGCATGCTACCGATCC
TGCTGCTACAACCCTCGGTCCGGTCCGAT
Found at i:14945787 original size:11 final size:11
Alignment explanation
Indices: 14945767--14945799 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14945757 CGGTTAGGCT
14945767 CTCCGACGATG
1 CTCCGACGATG
*
14945778 CTCTGACGATG
1 CTCCGACGATG
14945789 CTCCGACGATG
1 CTCCGACGATG
14945800 GTGCCCCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14950273 original size:158 final size:158
Alignment explanation
Indices: 14949942--14950322 Score: 372
Period size: 158 Copynumber: 2.4 Consensus size: 158
14949932 AACTCCGTTT
* *
14949942 GCTTAGACATGGAATGAACTTCATAAGCCTAAGCCAATCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAAC-TCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * ** * * * * * *
14950007 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCTCCTGTGTGTTGTCAATC
65 CCGACCAAAGAGGCAAAATGCACAAGCCGAGGATCGACCCAGTCCCCTCCGGCGTGCTGCCAATC
** *
14950072 CCGCTGCCACAAACCTCGGTCCGGCTTGA
130 CCGCTGCCACAAACCTCGGTCCAACTGGA
* * * * * * * *
14950101 TCTTAGAC-TGGGAATTAACTCGTATGCATAAGTCAACCCACGAAACGAGTGTGTGGGCGCTGAG
1 GCTTAGACAT-GGAATGAACTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
**
14950165 CCGACCAAAGAGGCAAAATGCACAAGCCGAGGATCGACCTC-GTCCCC-CTCGGCGTGCTGCCGG
65 CCGACCAAAGAGGCAAAATGCACAAGCCGAGGATCGACC-CAGTCCCCTC-CGGCGTGCTGCCAA
* * * *
14950228 TCCCGCTGCCACAATCCTTGGTCTAACTGGG
128 TCCCGCTGCCACAAACCTCGGTCCAACTGGA
* * * * *
14950259 GCTTAGACATGGAATGAACTCCCTATGCCTACGCCAACCCACGAAATGGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACT-CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
14950323 ATCGATCGAA
Statistics
Matches: 174, Mismatches: 43, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.01
158 123 0.71
159 50 0.29
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAAAGAGGCAAAATGCACAAGCCGAGGATCGACCCAGTCCCCTCCGGCGTGCTGCCAATCC
CGCTGCCACAAACCTCGGTCCAACTGGA
Found at i:14950453 original size:26 final size:26
Alignment explanation
Indices: 14950417--14950469 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14950407 CCGGTCTGAT
*
14950417 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14950443 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14950469 C
1 C
14950470 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14950705 original size:158 final size:158
Alignment explanation
Indices: 14950442--14950814 Score: 428
Period size: 159 Copynumber: 2.3 Consensus size: 158
14950432 AACTCCTTAT
* * * * *
14950442 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAG-GCGTGCGAGCGCTCA
* * * ** * * **
14950506 GCCAACCAGAGAGGCATAATGCATAAGCCGGGGATTGGCCCGGT-CCCCTCGGCGTGCT-GTTGG
64 GCCAACCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCGGAGTG-TGGCCGG
* * *
14950569 TCTCGCTGCCACAACCCTCAGTCTGGCTGGG
128 TCCCACTACCACAACCCTCAGTCTGGCTGGG
*
14950600 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGAGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-AGGCGTGCGAGCGCTCAG
*** * *
14950665 CTGGCCAGAGAGGTAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGAGTGTGGCCGGTC
65 CCAACCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCGGAGTGTGGCCGGTC
* *
14950730 CCACTACCACAATCCTCGGTCTGGCTGGG
130 CCACTACCACAACCCTCAGTCTGGCTGGG
* * *
14950759 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAATGGGCGTGCG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-AGGCGTGCG
14950815 GAAGCTCAGT
Statistics
Matches: 182, Mismatches: 29, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
158 88 0.48
159 94 0.52
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGCGTGCGAGCGCTCAGC
CAACCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCGGAGTGTGGCCGGTCC
CACTACCACAACCCTCAGTCTGGCTGGG
Found at i:14951831 original size:26 final size:26
Alignment explanation
Indices: 14951793--14951845 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14951783 GGCTCAAAAT
14951793 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14951819 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14951845 C
1 C
14951846 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14952322 original size:26 final size:26
Alignment explanation
Indices: 14952293--14952345 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14952283 CCGACCTGAT
14952293 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14952319 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14952345 C
1 C
14952346 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14953478 original size:26 final size:26
Alignment explanation
Indices: 14953449--14953502 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14953439 GGTCCGATCT
14953449 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* *
14953475 TAGACTGGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14953501 TA
1 TA
14953503 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:14954208 original size:26 final size:26
Alignment explanation
Indices: 14954170--14954222 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14954160 GGCTCAAAAT
14954170 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14954196 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14954222 C
1 C
14954223 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14954517 original size:158 final size:157
Alignment explanation
Indices: 14954196--14954696 Score: 402
Period size: 158 Copynumber: 3.2 Consensus size: 157
14954186 ACTCCATATG
* * ** * * * *
14954196 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACGCATGAAATGAGCGTTCGGGCGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCATAAGCCAACCCAAAAAACGAGCGTGCAGGCGCTCAG
* * * ** ** * * ** **
14954260 CCGGCCGAAGAGGCAGAACGTGCAAGCTTTG-GATCAGCTTGGTCC-CTCCTGTATGCTGTCGAT
65 CCGACCGAAGAGGCAGAATGCGCAAGC-CGGAGATTGGCTCGATCCGC-CCTCCATGCTACCGAT
* * *
14954323 CCTACTGCCACAACCCTCAGTTCGGTCTGAT
128 CCCACTGCCACAACCCTCGGTCCGG-CTGAT
* * * * * * *
14954354 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGTGTGCGGGCGTTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCATAAGCCAACCCAAAAAACGAGCGTGCAGGCGCTCAGC
** * * * * *
14954419 CGGTCGAAGAGGCATAATGCGCAAGCCGGGGATTGGC-CTGATCC-CCCTCTGCGTGCTGCCGGT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGAGATTGGCTC-GATCCGCCCTC--CATGCTACCGAT
**
14954482 CCCACTGCCACAACCCTCGGTCCGGCTGGG
128 CCCACTGCCACAACCCTCGGTCCGGCTGAT
* * * *
14954512 GTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAAAAAACGGGCGTGCAGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCATAAGCCAACCCAAAAAACGAGCGTGCAGGCGCTCAG
* * * *
14954576 CCGACCGGAGAGGCAGAATGCGCAAGCTGGAGATTGGCTCGGTCCGCCCTCCATGCTACCGATCT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATTGGCTCGATCCGCCCTCCATGCTACCGATCC
** * *
14954641 TGCTGTCACAACCCTCGGTCCGGTTCGAT
130 CACTGCCACAACCCTCGGTCCGGCT-GAT
*
14954670 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
14954697 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 62, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 37 0.14
158 197 0.73
159 37 0.14
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCATAAGCCAACCCAAAAAACGAGCGTGCAGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGAGATTGGCTCGATCCGCCCTCCATGCTACCGATCCC
ACTGCCACAACCCTCGGTCCGGCTGAT
Found at i:14954699 original size:26 final size:26
Alignment explanation
Indices: 14954670--14954722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14954660 CCGGTTCGAT
*
14954670 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14954696 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14954722 C
1 C
14954723 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14954999 original size:343 final size:342
Alignment explanation
Indices: 14954354--14955292 Score: 1022
Period size: 343 Copynumber: 2.7 Consensus size: 342
14954344 TCGGTCTGAT
* * * * * * *
14954354 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGTGTGCGGGCGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGTAGAGC
* * * * * * *
14954419 CGGTCGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCTGATCCCCCTCTGCGTGCTGCCGGTCC
66 CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCACCCTCTGCATGCTGCCGGTCC
* * *
14954484 CACTGCCACAACCCTCGGTCCGGCTGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 CACTGCCACAACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* **
14954549 CCAAAAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGAGATTGGC
196 CCAAAAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCAGGAGATCAGC
* ** * * * *
14954614 TCGGTCCGCCCTCCATGCTACCGATCTTGCTGTCACAACCCTCGGTCCGGTTCGATCTTAGACTG
261 CCGACCCACCCTACATGCTACCGATCCTGCTGTCACAACCCTCGATCCGGTTCGATCTTAGACTG
14954679 GGAATGAACTCCGTATG
326 GGAATGAACTCCGTATG
* * *
14954696 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAGAACAAGCGTGCGGGTGTAGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGTAGAGC
* * *
14954761 CGATCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCACCCTCTGCATGCTGTCGGTCC
66 CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCACCCTCTGCATGCTGCCGGTCC
*
14954826 CGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
** * * * *
14954891 CCCACGAAATGGGCGTGCAGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGTAAGCCAGG-GATCA
195 CCCAAAAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-CAGGAGATCA
* * ** *
14954955 GCCCGACCCACCCTACGTGCTACTGATCCTGCTGTCGTAACCCTCGATCCGGTTTGATCTTAGAC
259 GCCCGACCCACCCTACATGCTACCGATCCTGCTGTCACAACCCTCGATCCGGTTCGATCTTAGAC
14955020 TGGGAATGAACTCCGTATG
324 TGGGAATGAACTCCGTATG
* * ** ** *
14955039 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGTATACGGGCGCTCA-A
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCG-T-AGA
** * * * *
14955103 -CCGGCCGAAGAGGCATAATGCGTAAACCGAGGATCAGA-CCGATCCCCCTCTGCGTGCTACCGA
64 GCCGATCGAAGAGGCATAATGCGCAAGCCGAGGATC-GACCCGATCACCCTCTGCATG----C--
* * * * ** * *
14955166 TGCCGTTGCCAGTCTTGCTGCCACAACCCTCGGTCTGGTTGGGTCTTAGGCATGGAATTAACTCC
122 TGCCGGT-CC---C--ACTGCCACAACCCTCGATCCGACTGGG-CTTAGACATGGAATGAACTCC
* ** * * * * *
14955231 TTATGCCTAAGCCAACCCACGAAGCGAGCATGCAGGCGTTCAGCCGACTGGAGAGGCAGAAT
180 CTATGCCTAAGCCAACCCAAAAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAAT
14955293 ACATAAGTCG
Statistics
Matches: 501, Mismatches: 78, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
342 132 0.26
343 257 0.51
344 7 0.01
345 1 0.00
347 1 0.00
349 5 0.01
350 2 0.00
353 1 0.00
354 3 0.01
355 92 0.18
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGTAGAGC
CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCACCCTCTGCATGCTGCCGGTCC
CACTGCCACAACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCAAAAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCAGGAGATCAGC
CCGACCCACCCTACATGCTACCGATCCTGCTGTCACAACCCTCGATCCGGTTCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:14955042 original size:26 final size:26
Alignment explanation
Indices: 14955013--14955065 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14955003 CCGGTTTGAT
14955013 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14955039 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14955065 C
1 C
14955066 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14955754 original size:159 final size:158
Alignment explanation
Indices: 14955412--14956011 Score: 582
Period size: 159 Copynumber: 3.8 Consensus size: 158
14955402 GTATGCTTCA
* * * * *
14955412 ACATGGAATGAACTCCATGTGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCTCTCAGCCGACC
1 ACATGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCAGCCGACC
* * * * * *
14955477 GGAGAGGCAG-AATGCGCAAGCCGGGGA-CTGACCCGATCCCCCCTGCGTGCTATCGATCCTGCT
66 GGAGAGGC-GTAATGCACAAACCGAGGATC-GACCCGATCCCCCCTGCGTGCTGTAGATCCCGCT
** * **
14955540 ACCACAA-CCTTCTATCCGATCT-GATCTTAG
129 ACCACAACCCTT-GGTCC-AACTGGGGCTTAG
* * * * * * * * * *
14955570 AC-TGGGAATGAACTTCATATACCTAAGTCAACCCACGAAA-TGAGCGTGCGGGCGTTGAGCTGA
1 ACAT-GAAATGAACTCCATATGCCTAAGCCAACCCATGAAACAG-GCGTACGGGCGCTCAGCCGA
* * * *
14955633 CCGGAGAGGCGTAATTCATAAACTGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTAGATCCCGC
64 CCGGAGAGGCGTAATGCACAAACCGAGGATCGACCCGATCCCCC-CTGCGTGCTGTAGATCCCGC
14955698 TACCACAACCCTTGGTCCAACTGGGGCTTAG
128 TACCACAACCCTTGGTCCAACTGGGGCTTAG
* * * *
14955729 ACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGCACAGGCGCTCAGTCGACC
1 ACATGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCAGCCGACC
* * * * ** * *
14955794 AGAGAGGCGTAATGCACAAACCGGGGATCGGCCTGATCCTCCTATGCGTGCTGCAGATCCCGCTG
66 GGAGAGGCGTAATGCACAAACCGAGGATCGACCCGATCC-CCCCTGCGTGCTGTAGATCCCGCTA
14955859 CCACAACCCTTGGTCCAACTGGGGCTTAG
130 CCACAACCCTTGGTCCAACTGGGGCTTAG
** *
14955888 ACATGAAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCAGCCGATC
1 ACATGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCAGCCGACC
* ** ** * * * * * *
14955953 GAAGAGGCAAAATGCGTAAGCTGAGGATCGGCCCGTTCCCCCCTGTGTGCTGTCGATCC
66 GGAGAGGCGTAATGCACAAACCGAGGATCGACCCGATCCCCCCTGCGTGCTGTAGATCC
14956012 TGTTGCCGTA
Statistics
Matches: 359, Mismatches: 73, Indels: 20
0.79 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 100 0.28
159 249 0.69
160 8 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
ACATGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCAGCCGACC
GGAGAGGCGTAATGCACAAACCGAGGATCGACCCGATCCCCCCTGCGTGCTGTAGATCCCGCTAC
CACAACCCTTGGTCCAACTGGGGCTTAG
Found at i:14956077 original size:26 final size:26
Alignment explanation
Indices: 14956041--14956093 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14956031 TCGGTTCGAT
*
14956041 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14956067 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14956093 C
1 C
14956094 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14956814 original size:26 final size:26
Alignment explanation
Indices: 14956763--14956815 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14956753 TAAGTCCGAT
*
14956763 CTTAGACTGGGAATGAACTCATTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
14956789 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCAGTATG
14956815 C
1 C
14956816 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:14962758 original size:11 final size:11
Alignment explanation
Indices: 14962744--14962769 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14962734 GCTCTCCGAC
14962744 GATGCTCCGGT
1 GATGCTCCGGT
14962755 GATGCTCCGGT
1 GATGCTCCGGT
14962766 GATG
1 GATG
14962770 GTGCCCTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.12, C:0.23, G:0.38, T:0.27
Consensus pattern (11 bp):
GATGCTCCGGT
Found at i:14962877 original size:26 final size:26
Alignment explanation
Indices: 14962839--14962888 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14962829 GGCTCAAAAT
14962839 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
14962865 CTTAGACAT-GGAATGAGCTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
14962889 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14963064 original size:26 final size:26
Alignment explanation
Indices: 14963035--14963087 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14963025 CTGATCCGAT
*
14963035 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* * *
14963061 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
14963087 C
1 C
14963088 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:14963912 original size:26 final size:26
Alignment explanation
Indices: 14963872--14963922 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14963862 CGGTCCAATC
*
14963872 TTAGACTGGGAATGAACTTTGTATGG
1 TTAGACTGGGAATGAACTTCGTATGG
*
14963898 TTAGACTGGGGATGAACTTCGTATG
1 TTAGACTGGGAATGAACTTCGTATG
14963923 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.10, G:0.31, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGG
Found at i:14965138 original size:26 final size:26
Alignment explanation
Indices: 14965097--14965149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14965087 CCATTCTGAT
*
14965097 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14965123 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14965149 C
1 C
14965150 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14965506 original size:26 final size:26
Alignment explanation
Indices: 14965477--14965532 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
14965467 CCGGTCTGAT
14965477 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14965503 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14965529 CTTA
1 CTTA
14965533 AACCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14965934 original size:159 final size:156
Alignment explanation
Indices: 14965502--14966253 Score: 483
Period size: 159 Copynumber: 4.7 Consensus size: 156
14965492 AACTCCGTAT
* * * * * *
14965502 GCTTAGACATGGAATGAACTTCGTATGCTTAAACCAACCCACGAAACGAGTGTGCGTACGGGCGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AA--A-TGAGCGTGCGGGCGC
*** * * *
14965567 TCAGCCGATTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCTCTGCGTGCTGTC
62 TCAGCCG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCACTGCGTGATG-C
* * * ** * * *
14965631 GATGCTGCTGTCGTAACCCTCAGTCTGGTCTGA
125 GATCCCGCTGCCACAACCCTCGGTCCGG-CTGG
* ** * * * * * * *
14965664 TCTTAGACCGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACT-AGCGTGCAGGCGTTGA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTCA
* * * ** ** *
14965728 ACCGATCGGAGAGGCATAATGCGCAAGTTGGGTTTC-AGCTC-GATCCCCCACTGCGTGATGCGG
65 GCCG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCAG-TCCCCCACTGCGTGATGC-G
*
14965791 GTCCCGCTGCCACAACCCTCGGTCCGGCTAGG
126 ATCCCGCTGCCACAACCCTCGGTCCGGCT-GG
** *
14965823 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
14965888 CCTGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAGTCCCCCCCTGCGTGCTAT-CGAT
66 CC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCACTGCGTG--ATGCGAT
* * ** * * *
14965952 CCTGCTACCGTAACCCTCAGTCTGGTCTGA
128 CCCGCTGCCACAACCCTCGGTCCGG-CTGG
* *** ** ** * * * ** * *
14965982 TCTT-GGGTTGGGAATGAACTCTGTATTTCTAAGTCAAGCCACTAAATGAGCGTGCAAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * * *
14966046 GCCGATCGGAGAGGAATAATGCGCAAGCTGAGGATCGACCC-GATCCCCCTCTTCATGCTGCCGA
65 GCCG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAG-TCCCCCACTGCGTGATG-CGA
* *
14966110 TCCCGATGCCACAACCCTCGGTCCGACTGGG
127 TCCCGCTGCCACAACCCTCGGTCCGGCT-GG
* *
14966141 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
14966206 TCGGCTGGAGCGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCC
66 -CCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCC
14966254 CTACATGCTG
Statistics
Matches: 440, Mismatches: 129, Indels: 45
0.72 0.21 0.07
Matches are distributed among these distances:
157 3 0.01
158 51 0.12
159 335 0.76
160 11 0.03
161 4 0.01
162 36 0.08
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCACTGCGTGATGCGATCCC
GCTGCCACAACCCTCGGTCCGGCTGG
Found at i:14966092 original size:318 final size:317
Alignment explanation
Indices: 14965502--14966319 Score: 1000
Period size: 318 Copynumber: 2.6 Consensus size: 317
14965492 AACTCCGTAT
* * * * *
14965502 GCTTAGACATGGAATGAACTTCGTATGCTTAAACCAACCCACGAAACGAGTGTGCGTACGGGCGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGT--GT--GGGCGC
* * * *
14965567 TCAGCCGATTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCG
62 TCAGCCG-CTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCG
* * *
14965632 ATGCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACCGGGAATGAACT-TCGTATGCCTAA
126 ATCCTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTCGTATGCCTAA
* ** * *
14965696 GTCAACCCATGAAACTAGCGTGCAGGCGTTGAACCGATCGGAGAGGCATAATGCGCAAGTTGGGT
191 GTCAACCCATGAAACTAGCGTGCAAGCACTGAACCGATCGGAGAGGAATAATGCGCAAGCTGGGT
* * * * * * *
14965761 TTCAGCTCGATCCCCCACTGCGTGATGCGGGTCCCGCTGCCACAACCCTCGGTCCGGCTAGG
256 ATCAGCCCGATCCCCCACTGCATGATGCCGATCCCGATGCCACAACCCTCGGTCCGACTAGG
*
14965823 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * *
14965888 CCTGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAGTCCCCCCCTGCGTGCTATCGATC
66 CC-GCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGT-CCCCCCTGCGTGCTGTCGATC
* * ** **
14965953 CTGCTACCGTAACCCTCAGTCTGGTCTGATCTTGGGTTGGGAATGAACTCT-GTATTTCTAAGTC
129 CTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTCGTATGCCTAAGTC
* *
14966017 AAGCCACT-AAA-TGAGCGTGCAAGCACTGAGCCGATCGGAGAGGAATAATGCGCAAGCTGAGG-
194 AACCCA-TGAAACT-AGCGTGCAAGCACTGAACCGATCGGAGAGGAATAATGCGCAAGCTG-GGT
* * * *
14966079 ATC-GACCCGATCCCCCTCTTCATGCTGCCGATCCCGATGCCACAACCCTCGGTCCGACTGGG
256 ATCAG-CCCGATCCCCCACTGCATGATGCCGATCCCGATGCCACAACCCTCGGTCCGACTAGG
* * * *
14966141 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * * *
14966206 TCGGCTGGAGCGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTACATGCTGTCGATCC
66 -CCGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
* * *
14966271 TACTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
130 TGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTC
14966320 CATATGCTTA
Statistics
Matches: 426, Mismatches: 63, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
317 108 0.25
318 264 0.62
319 7 0.02
321 47 0.11
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CCGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTCGTATGCCTAAGTCAA
CCCATGAAACTAGCGTGCAAGCACTGAACCGATCGGAGAGGAATAATGCGCAAGCTGGGTATCAG
CCCGATCCCCCACTGCATGATGCCGATCCCGATGCCACAACCCTCGGTCCGACTAGG
Found at i:14966336 original size:26 final size:26
Alignment explanation
Indices: 14966300--14966378 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14966290 CTGGTCCGAT
*
14966300 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
*
14966326 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGGATGAACTCCATATG
*
14966352 TTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
14966378 C
1 C
14966379 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:14967105 original size:26 final size:26
Alignment explanation
Indices: 14967064--14967116 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14967054 TCAGTCTGAT
14967064 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14967090 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14967116 C
1 C
14967117 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14967778 original size:56 final size:56
Alignment explanation
Indices: 14967689--14967800 Score: 179
Period size: 56 Copynumber: 2.0 Consensus size: 56
14967679 ATCGACCCAA
* *
14967689 TCCCCCTCTGCGTGCTGCCGATCCCGCTATCACAACCTTCAGTCCAACTGGGGCTT
1 TCCCCCTCTACGTGCTGCCGATCCCGCTATCACAACCTACAGTCCAACTGGGGCTT
* * *
14967745 TCCCCCTCTACGTGCTGCCGGTCCCGCTGTCACAACCTACAGTCCAGCTGGGGCTT
1 TCCCCCTCTACGTGCTGCCGATCCCGCTATCACAACCTACAGTCCAACTGGGGCTT
14967801 AGACATGGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.13, C:0.41, G:0.21, T:0.24
Consensus pattern (56 bp):
TCCCCCTCTACGTGCTGCCGATCCCGCTATCACAACCTACAGTCCAACTGGGGCTT
Found at i:14968090 original size:158 final size:158
Alignment explanation
Indices: 14967786--14968075 Score: 422
Period size: 158 Copynumber: 1.8 Consensus size: 158
14967776 ACAACCTACA
* ** *
14967786 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAATGGGCACG
1 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCACG
** * * *
14967851 CGGGCGCTCAGTAGGCTGGAGAAGTAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCTCTGCG
66 CGGGCGCTCAACAGGCTGGAGAAGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCG
14967916 TGCAGCCGATCCGTTGCCATAACCCTCG
131 TGCAGCCGATCCGTTGCCATAACCCTCG
* **
14967944 GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTG
1 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCACG
* * *
14968009 CGGGCGCTCAACCGG-TCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCC-CTGT
66 CGGGCGCTCAACAGGCT-GGAGAAGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGC
14968072 GTGC
130 GTGC
14968076 TATCGATCTT
Statistics
Matches: 116, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
157 8 0.07
158 108 0.93
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (158 bp):
GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCACG
CGGGCGCTCAACAGGCTGGAGAAGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCG
TGCAGCCGATCCGTTGCCATAACCCTCG
Found at i:14968155 original size:26 final size:26
Alignment explanation
Indices: 14968126--14968178 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14968116 CCAGTCTGAT
14968126 CTTAGAC-TGTGAATGAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
*
14968152 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14968178 C
1 C
14968179 CTAAGGTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14969346 original size:26 final size:26
Alignment explanation
Indices: 14969310--14969362 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14969300 TCGGTCTGAT
14969310 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14969336 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14969362 C
1 C
14969363 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14969897 original size:159 final size:159
Alignment explanation
Indices: 14969335--14970088 Score: 605
Period size: 159 Copynumber: 4.7 Consensus size: 159
14969325 AACTCCATAT
* * * * **
14969335 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * ** * *
14969399 GCTGGCCGAAGAGGCATAATGCATAAATCGAGGG-TCAGCCTGGTCCCCCTCTGCGTGCTGCCGA
65 GCTAGCCGAAGAGGCAGAATGCACAAGCCG-GGGATCGGCCTGATCCCCCTCTGCGTGCT---G-
* * *
14969463 TCCCGCTGCCTGCTGCCACAACCCTCGGCCCGACTGGG
125 T--CGGT-CCTGCTGCCACAACCCTCGGTCCGGCTGGG
** * * *
14969501 G-TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * **
14969565 CTGGCC-AGAGAGGCAAAATGCACAAGCCGGGGATTGGTCC-GGTCCCTCC-CTATGTGCTGTCG
66 CTAGCCGA-AGAGGCAGAATGCACAAGCCGGGGATCGG-CCTGATCCC-CCTCTGCGTGCTGTCG
* ** * ** * * *
14969627 GTCCTGTTATCGCAACCCTCGGTTTGGTTTGA
128 GTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
* * * ** * * *
14969659 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTGAACCCATGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
** ** * * * * *
14969723 GCCGGTAGGAGAGGCATAATACGCAAGCTGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGT
65 GCTAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGT
*
14969788 CCTGCTGCCACAACCTTCGGTCCGGCTGGG
130 CCTGCTGCCACAACCCTCGGTCCGGCTGGG
** * *
14969818 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTTGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA-
* * * * * *
14969883 GC-AGCCGAAAAGGCAGAATGCACGAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGTTG-CTAG
65 GCTAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTC-GG
* * * * ** *
14969945 T-CTCGTTGCTAGAA-CCTCCGTCTAGTTGGG
129 TCCT-GCTGCCACAACCCTCGGTCCGGCTGGG
* * *
14969975 GCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
14970040 CTAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCT
66 CTAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCT
14970089 ATGTAATGTC
Statistics
Matches: 470, Mismatches: 102, Indels: 40
0.77 0.17 0.07
Matches are distributed among these distances:
156 2 0.00
157 109 0.23
158 52 0.11
159 200 0.43
160 3 0.01
161 1 0.00
162 1 0.00
164 4 0.01
165 92 0.20
166 6 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CTAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGTC
CTGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:14970174 original size:26 final size:26
Alignment explanation
Indices: 14970145--14970197 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14970135 CCAGTCCGAT
14970145 CTTAGAC-TGGGAATGAAC-TCCGTATG
1 CTTAGACAT-GGAATGAACGT-CGTATG
14970171 CTTAGACATGGAATGAACGTCGTATG
1 CTTAGACATGGAATGAACGTCGTATG
14970197 C
1 C
14970198 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACGTCGTATG
Found at i:14970527 original size:26 final size:26
Alignment explanation
Indices: 14970487--14970537 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14970477 CGATCCGATC
*
14970487 TTAGACTGAGAATGAACTCTGTATGT
1 TTAGACTGAGAATGAACTCCGTATGT
* *
14970513 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGAGAATGAACTCCGTATG
14970538 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGT
Found at i:14971200 original size:185 final size:185
Alignment explanation
Indices: 14970869--14971260 Score: 407
Period size: 185 Copynumber: 2.1 Consensus size: 185
14970859 GATCCAATCT
* * *
14970869 TAGACTGGGAATGATCTTCGTATGCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * * *
14970934 GAAACGAGTGTATGGGCACTCAACCATCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCCAA
66 GAAACGAGCGTAGGGGCACTCAACCATCCGGAGAAGCAGAATGCACAAGCGAGGGACCGACCCAA
* * * **
14970999 TCCCCTCCTGCGTGCTGTCGATCCTGCTA-TCGCAA-CCTTCGATCCGGTCTGATCC
131 TCCCCTCCTACGTGCTGGCGATCCTACTACT-GCAACCCTT-GATCCAATCTGATCC
* * ** * *
14971054 TAGACTAGGAATGAACTCCGTATGCTTAGACATGGTATGAACTCTGTATGCCTAAGCCAACCTAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * ** *
14971119 GAAATGAGCGTGCGGGGCGCTCAGTCGGT-CGGAGAAGCAGAATGCACAAGTCGA-GGACCGGCC
66 GAAACGAGCGT-AGGGGCACTCA-ACCATCCGGAGAAGCAGAATGCACAAG-CGAGGGACCGACC
** * * * *
14971182 CGGTCCCC-CCTACGTGCTGGCGATCTTACTACTGCAACCCTTGGTTCAATCTGATCT
128 CAATCCCCTCCTACGTGCTGGCGATCCTACTACTGCAACCCTTGATCCAATCTGATCC
14971239 TAGACTGGGAATGAACTCCGTA
1 TAGACTGGGAATGAACTCCGTA
14971261 AGCCTAAGTC
Statistics
Matches: 168, Mismatches: 34, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
185 119 0.71
186 45 0.27
187 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (185 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
GAAACGAGCGTAGGGGCACTCAACCATCCGGAGAAGCAGAATGCACAAGCGAGGGACCGACCCAA
TCCCCTCCTACGTGCTGGCGATCCTACTACTGCAACCCTTGATCCAATCTGATCC
Found at i:14973094 original size:159 final size:159
Alignment explanation
Indices: 14972807--14973099 Score: 342
Period size: 159 Copynumber: 1.8 Consensus size: 159
14972797 TCTCTGTATG
* * * *
14972807 CTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTATGGGCTCTCAGC
1 CTTAGATATGGAAGGAACTCCGTATCCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCTCAGC
* * * * * ** **
14972872 CATCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAATCCCCTCCTGCGTGTTGTCGATCC
66 CATCCGGAGAGACAGAATGCACAAGCCGAGGACAGACCCAATCCCCACCTACGTACTACCGATCC
14972937 TGCTACCGCATCCCTCGGTCTAGTCTGAT
131 TGCTACCGCATCCCTCGGTCTAGTCTGAT
* *
14972966 CTTAGACTA-GGAAGGAACTTCGTATCCCTAAGCCAACCCACGAAACGAGCGTGCGGG-TGCTCA
1 CTTAGA-TATGGAAGGAACTCCGTATCCCTAAGCCAACCCACGAAACGAGCGTACGGGCT-CTCA
* * * **
14973029 GTCGAT-CGGAGAGATAGAATGCACAAGTCGAGGATCAG-CCCGGTCCCCACCTACGTACTACCG
64 G-CCATCCGGAGAGACAGAATGCACAAGCCGAGGA-CAGACCCAATCCCCACCTACGTACTACCG
14973092 ATCCTGCT
127 ATCCTGCT
14973100 GCTGGTCCTG
Statistics
Matches: 110, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
158 1 0.01
159 102 0.93
160 7 0.06
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
CTTAGATATGGAAGGAACTCCGTATCCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCTCAGC
CATCCGGAGAGACAGAATGCACAAGCCGAGGACAGACCCAATCCCCACCTACGTACTACCGATCC
TGCTACCGCATCCCTCGGTCTAGTCTGAT
Found at i:14973578 original size:158 final size:157
Alignment explanation
Indices: 14973161--14973619 Score: 403
Period size: 158 Copynumber: 2.9 Consensus size: 157
14973151 AACTCCGTAT
* * * * *
14973161 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAATGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCAGTCAG
* * * *
14973226 TCGATCAGAGAGGTAGAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCCT
66 TCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTGCGTGCTGTCGATCCT
* *
14973291 GCTATCGCAACCCTCAATCCTATCCAA
131 GCTACCACAACCCTCAATCCTATCCAA
* * *
14973318 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCCACAAAAC-GAGCGTCCGGGC-G-
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA-CCCACAAAACGGA-CGTGCGGGCAGT
* * * * *
14973379 CTGTGCTGACCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGT
63 CAGT-C-GATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGAT-CCCC-CTGCGTGCTGT
* * ** ***
14973444 CGGTCTTGCT-CCACAACCCTCGCT-CTGA-CTGGG
124 CGATCCTGCTACCACAACCCTCAATCCT-ATC-CAA
* * * *
14973477 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAAACCACCAAACGGACGTGCGGGCAGTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCAGTCAG
* *** * * * **
14973542 TCGATCGGAGAGACAGAATCCACAAGTCGGGGATCGGCTTCG-TCCCCCCTACGTGTTACCGATC
66 TCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGC-CCGAT-CCCCCTGCGTGCTGTCGATC
*
14973606 CTGCTACCGCAACC
129 CTGCTACCACAACC
14973620 TACGGTCCAG
Statistics
Matches: 237, Mismatches: 50, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.02
157 50 0.21
158 108 0.46
159 52 0.22
160 23 0.10
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCAGTCAG
TCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCAATCCTATCCAA
Found at i:14973672 original size:26 final size:26
Alignment explanation
Indices: 14973636--14973688 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14973626 CCAGTCTGAT
*
14973636 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14973662 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14973688 C
1 C
14973689 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.