Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 91 of 138
Found at i:14974359 original size:26 final size:26
Alignment explanation
Indices: 14974323--14974375 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14974313 GTCTCAAACT
*
14974323 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
14974349 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14974375 C
1 C
14974376 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14974561 original size:26 final size:26
Alignment explanation
Indices: 14974532--14974587 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14974522 CCGATCTGAT
**
14974532 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
14974558 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
14974584 CTTA
1 CTTA
14974588 AGCCAACCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14975485 original size:26 final size:26
Alignment explanation
Indices: 14975456--14975508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14975446 CCGATTCAAT
14975456 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
14975482 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14975508 C
1 C
14975509 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14975691 original size:26 final size:25
Alignment explanation
Indices: 14975652--14975703 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14975642 CCGGTTCGAT
14975652 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCTGTATG
14975677 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCTGTATG
14975703 C
1 C
14975704 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:14976073 original size:691 final size:700
Alignment explanation
Indices: 14974708--14976250 Score: 1858
Period size: 691 Copynumber: 2.2 Consensus size: 700
14974698 ACCCTCAGTT
* ** * * * * *
14974708 CGTGCTACCGATCCTACTGCCACAACCCTTGATCCGGTTCGATCTTAGACTAGGAATGAACTTCA
1 CGTGCTACTGATCCTACTGCCGTAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCG
* * * * * *
14974773 TATGCTTAGACTGGGGATGAACTCCGTCTGCCTAAGTCAACCCACAAAACAAGCGTACAGGTGGT
66 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
* * * * *
14974838 CAACCGATCAGAGAAGTCAGCCGGAGAGGCCGAATGCACAAGCCAAGGATCAACCCGGGCCCCTT
131 CAACCGATCGGAGAGGCCAGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAACCCGGGCCCCTC
* *
14974903 TACATGCTGTCGATCCTGCTGCTGGTCCTGCTACTGCAACCCTTAGTCCGGTTCGATCTTAGATT
196 TACATGCTGTCGATCCT-CTGCTGG-CC-GCTAC--CAACCCTCAGTCCGGTTCGATCTTAGACT
** *
14974968 GGGAATGAACTCTATATGCTTAGACATGGAATAAACTTCGTATGGTTAAGCCAACCCACGAAATG
256 GGGAATGAACTCTATATGCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACG
* * * * *
14975033 AGCGTGCAGGCGCTCAGTCGATCGGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCC
321 AGCGTGCAGGCGCTCAGTCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCGGTCCCCC
* * * * *
14975098 CTGCGTGCTATCGATCCTGCTACCGTAATCCTTGATCCGATCTTAGACTGGCAATGAGCTCCGTA
386 CTACGTGCTATCAATCCTACTACCGTAATCCTCGATCCGATCTTAGACTGGCAATGAGATCCGTA
* * * * ** * * * * * *
14975163 TTCCTAGGACCACTCATGAAATGAGCGTTCGGGTGTTGAGCCGATCGAAGAGGCATAATACGCAT
451 TGCCTAAGACAACCCACAAAATGAGCGTTCAGGCGCTGAGCCGATCGAAGAGCCATAATACACAA
* * *
14975228 GGCGATGATCGGCCCGATCCCCCTCTACGTGTTACCGGTCTCGCTGCCACAACCCTCGGTCCGAC
516 GGCGATGATCGGCCCGATCCCCCTCTACGTGCTACCAGTCTCACTGCCACAACCCTCGGTCCGAC
* * * **
14975293 TGGGGCTTAGACATGGAATGAACTCCCTATTCCTAACCAAACCCATGAAATGGGCGTGCGGGCGC
581 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCAAACCCACGAAATGGGCATGCGCACGC
* * **
14975358 TCAGCCAACCGGAGAGGTAGAATGCGTAAGCCGA-GGATCGGCCCAATCCCCCCTG
646 TCAACCAACCGGAGAGGCAGAATGCACAAG-CGAGGGATCGGCCCAATCCCCCCTG
* * *
14975413 CGTGCTACTGATCCTACTACCGTAACCCTCGATCCGATTCAATCTTAGAATGGGAATGAACTCCG
1 CGTGCTACTGATCCTACTGCCGTAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCG
*
14975478 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCT
66 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
* * ** ***
14975543 CAACCGGTCGGAGAGGCC-GACGGGAGAGGCAGAATGCACAAGCTGAGGATTGGCCCGGGCCCC-
131 CAACCGATCGGAGAGGCCAG-CCGGAGAGGCAGAATGCACAAGCCAAGGATCAACCCGGGCCCCT
* *
14975606 CTACATGCTGTTGAT-CT-TGCT-G-C-C-A-CAACCCTCGGTCCGGTTCGATCTTAGACT-GGA
195 CTACATGCTGTCGATCCTCTGCTGGCCGCTACCAACCCTCAGTCCGGTTCGATCTTAGACTGGGA
* * *
14975663 ATGAACTCTGTATGCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCACGGAACGAGC
260 ATGAACTCTATATGCTTAGACATGGAATAAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGC
* * * *
14975727 GTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCTGGTCCCCCCTA
324 GTGCAGGCGCTCAGTCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCGGTCCCCCCTA
* * * * *
14975792 CGTGCTGTCAATCCTACTGCCGTAATCCTCGGTCTGATCTTAGACTGGGAATGAGATCCGTATGC
389 CGTGCTATCAATCCTACTACCGTAATCCTCGATCCGATCTTAGACTGGCAATGAGATCCGTATGC
* * * * *
14975857 CTAAGACAACCCACAAAATGAGTGTTCAGGCGCTGAGCTGA-CAGGAGAGCCATAATGCACAAGT
454 CTAAGACAACCCACAAAATGAGCGTTCAGGCGCTGAGCCGATC-GAAGAGCCATAATACACAAGG
* * * * **
14975921 CGGTGATTGGCTCGGTCCCCCTCTACGTGCTACCAGTCTCACTGCCACAACCCTCGGTCCGGTTG
518 CGATGATCGGCCCGATCCCCCTCTACGTGCTACCAGTCTCACTGCCACAACCCTCGGTCCGACTG
* *
14975986 GGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCC-AACCCACGAAACT-GGCATGTGCACGC
583 GGGCTTAGACATGGAATGAACTCCCTATGCCTAA-CCAAACCCACGAAA-TGGGCATGCGCACGC
* * * * *
14976049 TCAACCGACCTGAGAGGCAGAATGCACAAGCTAGGGATCGGCCCAGTCCCCCTTG
646 TCAACCAACCGGAGAGGCAGAATGCACAAGCGAGGGATCGGCCCAATCCCCCCTG
* * * * ** *
14976104 GGTGCT-GTCGATCCTGCTGTCGTAACCCTCGATCTAATTCGATCTTAGACTGGGAATGAAGTCC
1 CGTGCTACT-GATCCTACTGCCGTAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCC
** *
14976168 GTATAATTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
65 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGC
*
14976233 TCAACCGACCGGAGAGGC
130 TCAACCGATCGGAGAGGC
14976251 TGGTCGAAGA
Statistics
Matches: 714, Mismatches: 117, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
690 6 0.01
691 493 0.69
692 29 0.04
695 1 0.00
696 1 0.00
698 1 0.00
700 1 0.00
701 4 0.01
703 2 0.00
704 14 0.02
705 162 0.23
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (700 bp):
CGTGCTACTGATCCTACTGCCGTAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
CAACCGATCGGAGAGGCCAGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAACCCGGGCCCCTC
TACATGCTGTCGATCCTCTGCTGGCCGCTACCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAA
TGAACTCTATATGCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGT
GCAGGCGCTCAGTCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCGGTCCCCCCTACG
TGCTATCAATCCTACTACCGTAATCCTCGATCCGATCTTAGACTGGCAATGAGATCCGTATGCCT
AAGACAACCCACAAAATGAGCGTTCAGGCGCTGAGCCGATCGAAGAGCCATAATACACAAGGCGA
TGATCGGCCCGATCCCCCTCTACGTGCTACCAGTCTCACTGCCACAACCCTCGGTCCGACTGGGG
CTTAGACATGGAATGAACTCCCTATGCCTAACCAAACCCACGAAATGGGCATGCGCACGCTCAAC
CAACCGGAGAGGCAGAATGCACAAGCGAGGGATCGGCCCAATCCCCCCTG
Found at i:14976188 original size:26 final size:26
Alignment explanation
Indices: 14976148--14976197 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14976138 TAATTCGATC
*
14976148 TTAGACTGGGAATGAAGTCCGTATAA
1 TTAGACTGGGAATGAACTCCGTATAA
*
14976174 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
14976198 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAA
Found at i:14976550 original size:26 final size:26
Alignment explanation
Indices: 14976514--14976566 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14976504 CTGGTCTGAT
14976514 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14976540 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14976566 C
1 C
14976567 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14977275 original size:158 final size:157
Alignment explanation
Indices: 14976904--14977318 Score: 370
Period size: 158 Copynumber: 2.6 Consensus size: 157
14976894 AACTCCGTAT
* * * * *
14976904 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAATGAGCATGCAAGCACTCAA
1 GCTTA-AAATGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTGCGAGCACTCAA
* * * * *
14976969 CCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCAAACCGATCCCCCCTATGTGCTGTTGATCC
65 CCGATCGGAGAGCCAGAATGCGCAAGCCGAGGATCAAACCAATCCCCCCTATGTGCTGTCGATCC
**
14977034 TACTACCGTAACCCTCAGTTCGGTTCGA
130 TACTACCACAACCCTCAGTTCGGTTCGA
* * * * * * *
14977062 TCTTAGAATAGGAATGAACTCCGTATGCCT-ATGTCAACCCACGAAACGAGTGTGCGAGCATTGA
1 GCTTAAAAT-GGAATGAACTCCATATGCCTAAT-CCAACCCACGAAACGAGCGTGCGAGCACTCA
* * * * * *
14977126 ACCGATCGGAGAGCCATAATGCGCAAGCC-AGGGATCGATCCAATCCCCTTCTGTGTGCTGTCGG
64 ACCGATCGGAGAGCCAGAATGCGCAAGCCGA-GGATCAAACCAATCCCC-CCTATGTGCTGTCGA
* * * *
14977190 T-CTCGCTGCCACAACCCTCAG-TCTGGTTGGG
127 TCCT-ACTACCACAACCCTCAGTTC-GGTTCGA
* * * * ** *
14977221 GCTTAAAATGGAATGAACTCCCTATGCCTAATCCAACCCACAAAACGGGCGTGCGGGTGCTCAGC
1 GCTTAAAATGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTGCGAGCACTCAAC
* * * * *
14977286 CGGTCAGAGAGGCAGAATGCACAAGCCGGGGAT
66 CGATCGGAGAGCCAGAATGCGCAAGCCGAGGAT
14977319 TGGCCCAGTC
Statistics
Matches: 201, Mismatches: 48, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 157 0.78
159 39 0.19
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.20
Consensus pattern (157 bp):
GCTTAAAATGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTGCGAGCACTCAAC
CGATCGGAGAGCCAGAATGCGCAAGCCGAGGATCAAACCAATCCCCCCTATGTGCTGTCGATCCT
ACTACCACAACCCTCAGTTCGGTTCGA
Found at i:14978620 original size:158 final size:156
Alignment explanation
Indices: 14978126--14978627 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 156
14978116 ACTCCATATG
* * * *
14978126 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-
* * * *
14978191 CGGTCGAAGAGGCAGAATGTGCTAGCCGGGGATCGACCCAGTCCCCCCTGTGTGCTGTCGATCCT
65 CAGTCG-AGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCCT
* **
14978256 ACTGCCACAACCCTCGGTCCGGTCCAAT
129 ACTGCCACAACCCTCGGTCCAGTCGGAT
* * * * * *
14978284 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACTCC-CGAAATGAGTGTGCGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC-CCACGAAATGAGCGTGCGGGCGCTCA
* * * * *
14978347 GCAGGCCGAAACGGCATAATGCGCGAGCCGGGGATCGACCCGGTCCCCCTCTATGTGCTGTC-AG
64 GCA-GTCGAGA-GGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCC-CTATGTGCTGTCGA-
** * **
14978411 T-CTCACTGCCACAACCCTATGTCCA-CCTGGGG
125 TCCT-ACTGCCACAACCCTCGGTCCAGTC-GGAT
* * * *
14978443 GTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-
* * * * * *
14978508 CAGTCAGAGAGGCAGAATGTGCAAGCCAGGGATTGGCCCGGTTCCCCCTACGTGCTGCCGATCCT
65 CAGTC-GAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCCT
14978573 ACTGCCACAACCCTCGGTCCAGTCGGAT
129 ACTGCCACAACCCTCGGTCCAGTCGGAT
* *
14978601 CTTAGAC-TGGGAATAAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14978628 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 55, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
157 5 0.02
158 144 0.53
159 118 0.43
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
AGTCGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCCTAC
TGCCACAACCCTCGGTCCAGTCGGAT
Found at i:14978637 original size:26 final size:26
Alignment explanation
Indices: 14978601--14978653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14978591 CCAGTCGGAT
*
14978601 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
14978627 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14978653 C
1 C
14978654 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14980702 original size:170 final size:170
Alignment explanation
Indices: 14980376--14980706 Score: 420
Period size: 171 Copynumber: 1.9 Consensus size: 170
14980366 CCCTGCGTGT
* *
14980376 TGTCAATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCTATGCA
1 TGTCAATCCTGCTGCCACAACCCTCGATCCGGACTGAGCTTAGACTAGGAATGAACTCCTATGCA
* * * * *
14980441 TAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCAAAGAGGCATAATACGCAAGTCG
66 TAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCGATCAAAGAGGCAGAATACGCAAGCCG
14980506 AGGATCGACCTGATCCCCCTCTACGTGCTGTAGATCCCAC
131 AGGATCGACCTGATCCCCCTCTACGTGCTGTAGATCCCAC
* * * *
14980546 TGTCAGTCCTGCTGCCACAACCCTCGATCC-GACTGGGGCTTAGAC-ATGGTATGAATTCCGTAT
1 TGTCAATCCTGCTGCCACAACCCTCGATCCGGACT-GAGCTTAGACTA-GGAATGAACTCC-TAT
* * * ** * *
14980609 GCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAG
63 GCATAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCGATCAAAGAGGCAGAATACGCAAG
14980674 CC-AGGGATCGACAC-GATCCCCC-CTACGTGCTGT
128 CCGA-GGATCGAC-CTGATCCCCCTCTACGTGCTGT
14980707 CGATACTGCT
Statistics
Matches: 138, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
169 4 0.03
170 59 0.43
171 74 0.54
172 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (170 bp):
TGTCAATCCTGCTGCCACAACCCTCGATCCGGACTGAGCTTAGACTAGGAATGAACTCCTATGCA
TAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCGATCAAAGAGGCAGAATACGCAAGCCG
AGGATCGACCTGATCCCCCTCTACGTGCTGTAGATCCCAC
Found at i:14980727 original size:170 final size:168
Alignment explanation
Indices: 14980376--14980779 Score: 408
Period size: 170 Copynumber: 2.4 Consensus size: 168
14980366 CCCTGCGTGT
* * *
14980376 TGTCAATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCTATGCA
1 TGTCAGTCCTGCTGCCACAACCCTCGATCCGGACTGAGCTTAGACTAGGAATGAACTCCTATGCA
* * * * *
14980441 TAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCAAAGAGGCATAATACGCAAGTCG
66 TAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCGATCAAAGAGGCAGAATACGCAAGCCG
14980506 AGGATCGACCTGATCCCCCTCTACGTGCTGTAGATCCCAC
131 AGGATCGACCTGATCCCCCTCTACGTGCTGTAGAT--CAC
* * *
14980546 TGTCAGTCCTGCTGCCACAACCCTCGATCC-GACTGGGGCTTAGAC-ATGGTATGAATTCCGTAT
1 TGTCAGTCCTGCTGCCACAACCCTCGATCCGGACT-GAGCTTAGACTA-GGAATGAACTCC-TAT
* * * ** * *
14980609 GCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAG
63 GCATAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCGATCAAAGAGGCAGAATACGCAAG
*
14980674 CC-AGGGATCGACAC-GATCCCCC-CTACGTGCTGTCGAT-AC
128 CCGA-GGATCGAC-CTGATCCCCCTCTACGTGCTGTAGATCAC
* * * * * * * * *
14980713 TGCTACTGGTCCTGCTGTCGCAACCCTCG-GCCTGATCCGATCTTAGACTGGGAATGAACTCATA
1 TG-T-C-AGTCCTGCTGCCACAACCCTCGATCCGGA-CTGAGCTTAGACTAGGAATGAACTCCTA
14980777 TGC
62 TGC
14980780 TTAGACATGG
Statistics
Matches: 193, Mismatches: 30, Indels: 23
0.78 0.12 0.09
Matches are distributed among these distances:
167 4 0.02
168 1 0.01
169 12 0.06
170 100 0.52
171 75 0.39
172 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (168 bp):
TGTCAGTCCTGCTGCCACAACCCTCGATCCGGACTGAGCTTAGACTAGGAATGAACTCCTATGCA
TAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCGATCAAAGAGGCAGAATACGCAAGCCG
AGGATCGACCTGATCCCCCTCTACGTGCTGTAGATCAC
Found at i:14981289 original size:26 final size:26
Alignment explanation
Indices: 14981253--14981305 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14981243 CTAGTCCGAT
*
14981253 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14981279 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14981305 C
1 C
14981306 CTAATTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14982959 original size:159 final size:158
Alignment explanation
Indices: 14982543--14982946 Score: 438
Period size: 159 Copynumber: 2.6 Consensus size: 158
14982533 TCCGTATGCC
* * * *
14982543 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGCGCTCAGCCA
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCTCTCAGCCG
* * * * *
14982608 GCCGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGATCCCCCTTACGTGTTATCGATCCTGC
66 GCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCTTACGTGCTATCGATCCTGC
* * *
14982673 TGTCAGAACCCTCGATCTGATCTGATCT
131 TGCCAGAACCCTCGATCCGATCTGAGCT
* * * * * *
14982701 TAGAC-TGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAATGAGCATTCGGGCAT-TGAGC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGC-TCTCAGC
* * * * * *
14982764 CGGCCAGAGAGGCATATTGCGTAAGTCGGGGATCGGCCCGATCCCGCTCTGCGTGCTGTCGAT-C
64 CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCT-TACGTGCTATCGATCC
* * *
14982828 TCGCTGCCATAACCCTCGGTCCGA-CTGGGGCT
128 T-GCTGCCAGAACCCTCGATCCGATCT-GAGCT
* * * * *
14982860 TAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCATGAAACGGGCATGCAGGCTCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCTCTCAGCCG
*
14982925 GCCGGAGACGCAGAATGCGTAA
66 GCCGGAGAGGCAGAATGCGTAA
14982947 ACTAGGGATC
Statistics
Matches: 198, Mismatches: 41, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 95 0.48
159 101 0.51
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCTCTCAGCCG
GCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCTTACGTGCTATCGATCCTGC
TGCCAGAACCCTCGATCCGATCTGAGCT
Found at i:14983044 original size:26 final size:26
Alignment explanation
Indices: 14983015--14983067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14983005 CCGATTCAAT
14983015 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
*
14983041 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
14983067 C
1 C
14983068 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:14983936 original size:26 final size:26
Alignment explanation
Indices: 14983895--14983947 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14983885 CTTGTCTGAT
* *
14983895 CTTAGACTAGGAATGAAGTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14983921 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14983947 C
1 C
14983948 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14984679 original size:26 final size:26
Alignment explanation
Indices: 14984628--14984680 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14984618 GCCTCAAACT
*
14984628 CTTAGACTGGAAATGAACTCTATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
14984654 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCATATG
14984680 C
1 C
14984681 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:14986439 original size:26 final size:26
Alignment explanation
Indices: 14986388--14986440 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14986378 GGCTCAAACT
* *
14986388 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14986414 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14986440 C
1 C
14986441 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14987674 original size:185 final size:185
Alignment explanation
Indices: 14987336--14987688 Score: 440
Period size: 185 Copynumber: 1.9 Consensus size: 185
14987326 TAGACATGGA
* ** *
14987336 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACTTGCGGGCACTCAACCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGGCCAAAAAGG
** * * * **
14987401 CAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAAC
66 CAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCCCTGCGTGCTGCCGATCCCACTGCCACAAC
* *
14987466 CCTCGGTCTAGTCTAATCTTAGAC-TGAGAATGAACTCCATAAGATTAGACTGGGG
131 CCTCGGTCCAGTCTAAGCTTAGACATG-GAATGAACTCCATAAGATTAGACTGGGG
* * * * * *
14987521 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAACCGGCCAAAAAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGGCCAAAAAGG
* * * * *
14987586 CATAATACGTAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAAC
66 CAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCCCTGCGTGCTGCCGATCCCACTGCCACAAC
**
14987651 CCTCGGTCCAGT-TGGGGCTTAGACATGGAATGAACTCC
131 CCTCGGTCCAGTCT-AAGCTTAGACATGGAATGAACTCC
14987689 CTATGCTTAA
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
184 1 0.01
185 137 0.98
186 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (185 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGGCCAAAAAGG
CAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCCCTGCGTGCTGCCGATCCCACTGCCACAAC
CCTCGGTCCAGTCTAAGCTTAGACATGGAATGAACTCCATAAGATTAGACTGGGG
Found at i:14987867 original size:26 final size:26
Alignment explanation
Indices: 14987826--14987878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14987816 CTGGTCCGAT
14987826 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
14987852 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14987878 C
1 C
14987879 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14987945 original size:343 final size:344
Alignment explanation
Indices: 14987288--14987974 Score: 869
Period size: 343 Copynumber: 2.0 Consensus size: 344
14987278 AATCCCGCTA
* * * * * *
14987288 CCGGTCCTGCTGCCATAACCCTTGGTCCGGTTGGGGTTTAGACATGGAATGAACTCCGTATGCCT
1 CCGGTCCCGCTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * ** *
14987353 AAGCCAACCCACGAAACGAACTTGCGGGCACTCAACCGGCCGGAGAGGCAGAATGTGCAAGCCGA
66 AAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGACCGAAAAGGCAGAATGCACAAGCAGA
* * *
14987418 GGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCTAGTCTAAT
131 GGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTAGTCCAAT
*
14987483 CTTAGACTGAGAATGAACTCCATAAGATTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCC
196 CTTAGACTGAGAATGAACTCCATAAGATTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
14987548 ATGAAACGAGCGTGCGGGCATTGAACCGGCCAAAAAGGCATAATACGTAAGCCGAGGATCGACCC
261 ACGAAACGAGCGTGCAGGCATTCAACCGACCAAAAAGGCAGAATACGCAAGCCGAGGATCGACCC
*
14987613 AGTCCCCCTCTGCGTGCTG
326 AGTCCCCCCCTGCGTGCTG
*
14987632 CCGGTCCCGCTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCTT
1 CCGGTCCCGCTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* ** * ** * *
14987697 AAGCCAACCCACGAAATGGGCGTGTGGGCACTCAGTCGATCGAAAAGGTAGAATGCACAAGCA-A
66 AAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGACCGAAAAGGCAGAATGCACAAGCAGA
* * * * * * * *
14987761 GGGATTGGCTCGGT-CCCCCCTTCGTGCTGTCGATCTTGCTACCGCAACCCTCGGTCTGGTCCGA
131 -GGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTAGTCCAA
* *
14987825 TCTTAGACT-AGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
195 TCTTAGACTGA-GAATGAACTCCATAAGATTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * **
14987889 CCACGAAACGAGCGTG-AGGTAGTTCAGCCGACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGA
259 CCACGAAACGAGCGTGCAGGCA-TTCAACCGACCAAAAAGGCAGAATACGCAAGCCGAGGATCGA
*
14987953 CCCGGTCCCCCCCTGCGTGCTG
323 CCCAGTCCCCCCCTGCGTGCTG
14987975 TCTATCCTAC
Statistics
Matches: 290, Mismatches: 50, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
342 4 0.01
343 170 0.59
344 116 0.40
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (344 bp):
CCGGTCCCGCTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
AAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGACCGAAAAGGCAGAATGCACAAGCAGA
GGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTAGTCCAAT
CTTAGACTGAGAATGAACTCCATAAGATTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCAGGCATTCAACCGACCAAAAAGGCAGAATACGCAAGCCGAGGATCGACCC
AGTCCCCCCCTGCGTGCTG
Found at i:14988148 original size:185 final size:185
Alignment explanation
Indices: 14987824--14988158 Score: 471
Period size: 185 Copynumber: 1.8 Consensus size: 185
14987814 GTCTGGTCCG
*
14987824 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * *
14987889 CCACGAAACGAGCGTGAGGTAGTTCAGCCGACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGAC
66 CCACGAAACGAGCGTGAGGTAGTTCAGCCGACCAGAAAGGCAGAATGCGCAAGCAGAGGATCGAC
*
14987954 CCGGTCCCCCCCTGCGTGCTGTCTATCCTACTGCTGCAACCCTCGATCCAGTCTA
131 CCAGTCCCCCCCTGCGTGCTGTCTATCCTACTGCTGCAACCCTCGATCCAGTCTA
** * *
14988009 ATCTTAGACTAGGAATGAACTCTGTAAGCTTAGACTGGGGATGAATTTCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * *
14988074 CCACGAAACGAGCGT-ACGGGT-GTTGAGCCGGCC-GAAAAGGCATAATGCGCAAGTCAG-GGAT
66 CCACGAAACGAGCGTGA--GGTAGTTCAGCCGACCAG-AAAGGCAGAATGCGCAAG-CAGAGGAT
* * *
14988135 CGGCCTAGTCCCCCTCTGCGTGCT
127 CGACCCAGTCCCCCCCTGCGTGCT
14988159 ACCGATCTCG
Statistics
Matches: 131, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
184 2 0.02
185 124 0.95
186 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (185 bp):
ATCTTAGACTAGGAATGAACTCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGAGGTAGTTCAGCCGACCAGAAAGGCAGAATGCGCAAGCAGAGGATCGAC
CCAGTCCCCCCCTGCGTGCTGTCTATCCTACTGCTGCAACCCTCGATCCAGTCTA
Found at i:14988202 original size:185 final size:183
Alignment explanation
Indices: 14987773--14988216 Score: 468
Period size: 185 Copynumber: 2.4 Consensus size: 183
14987763 GATTGGCTCG
* * * *
14987773 GTCCCCCCTTCGTGCTGTCGATCTTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGA
1 GTCCCCCCTGCGTGCTGTCGATCTCGCTGCCGCAACCCTCGGTCTGGT-TGATCTTAGACTAGGA
*
14987838 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
65 ATGAACTCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
14987903 TGAGGTAGTTCAGCCGACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCG
130 TGAGGTAGTTCAGCCGACCAGAAAGGCAGAATGCGCAAGCAGAGGATCGACCCA
* * * * ** *
14987957 GTCCCCCCCTGCGTGCTGTCTATC-CTACTGCTGCAACCCTCGATCCAGTCTAATCTTAGACTAG
1 GT-CCCCCCTGCGTGCTGTCGATCTC-GCTGCCGCAACCCTCGGTCTGGT-TGATCTTAGACTAG
** * *
14988021 GAATGAACTCTGTAAGCTTAGACTGGGGATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAG
63 GAATGAACTCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
14988086 CGT-ACGGGT-GTTGAGCCGGCC-GAAAAGGCATAATGCGCAAGTCAG-GGATCGGCCTA
128 CGTGA--GGTAGTTCAGCCGACCAG-AAAGGCAGAATGCGCAAG-CAGAGGATCGACCCA
** * * **
14988142 GTCCCCCTCTGCGTGCTACCGATCTCGCTGCCACAACCCTTGGTCTGGTTGGGGCTTAGAC-ATG
1 GTCCCCC-CTGCGTGCTGTCGATCTCGCTGCCGCAACCCTCGGTCTGGTT-GATCTTAGACTA-G
14988206 GAATGAACTCC
63 GAATGAACTCC
14988217 CTATGCCTAA
Statistics
Matches: 211, Mismatches: 39, Indels: 19
0.78 0.14 0.07
Matches are distributed among these distances:
184 11 0.05
185 194 0.92
186 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (183 bp):
GTCCCCCCTGCGTGCTGTCGATCTCGCTGCCGCAACCCTCGGTCTGGTTGATCTTAGACTAGGAA
TGAACTCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GAGGTAGTTCAGCCGACCAGAAAGGCAGAATGCGCAAGCAGAGGATCGACCCA
Found at i:14988478 original size:342 final size:343
Alignment explanation
Indices: 14987851--14988478 Score: 800
Period size: 342 Copynumber: 1.8 Consensus size: 343
14987841 AACTCCATAT
* * * * *
14987851 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGTAGTTCAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGCAGCTCAG
* * * *
14987916 CCGACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCTATC
66 CCGACCAGAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCGGT-CCCCCCTACGTGCTGTCGATC
14987981 CTACTGCTGCAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCTGTAAGCTTAGACTG
130 CTACTGCTGCAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCTGTAAGCTTAGACTG
* * * * * * *
14988046 GGGATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGTTGAGCCGGCCGAAA
195 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAA
* *
14988111 AGGCATAATGCGCAAGTCAGGGATCGGCCTAGTCCCCCTCTGCGTGCTACCGATCTCGCTGCCAC
260 AGGCAGAATGCGCAAGCCAGGGATCGGCCTAGTCCCCCTCTGCGTGCTACCGATCTCGCTGCCAC
14988176 AACCCTTGGTCTGGTTGGG
325 AACCCTTGGTCTGGTTGGG
*
14988195 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTG-GGCA-CT
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGC--GTGAGGCAGCT
* ** * * * * * *
14988257 CAGTCGGTCGGAGAGGTAGAAAGCGCAAGCCGGGGATCGGCTCGGT-CCCCCTACGTGTTGTCGA
63 CAGCCGACCAGAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGA
* * * * * * *
14988321 TCCTGCTG-TCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTACGGTTAGA
128 TCCTACTGCT-GCAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCTGTAAGCTTAGA
* *
14988385 CTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACC-
192 CTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCG
* * *
14988449 AGAGAGGCAGGATGCGCAAGCCGGGGATCG
257 A-AAAGGCAGAATGCGCAAGCCAGGGATCG
14988479 AACGGGTGGT
Statistics
Matches: 239, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
341 2 0.01
342 148 0.62
344 82 0.34
345 4 0.02
346 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (343 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGCAGCTCAG
CCGACCAGAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
TACTGCTGCAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCTGTAAGCTTAGACTGG
GGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAAA
GGCAGAATGCGCAAGCCAGGGATCGGCCTAGTCCCCCTCTGCGTGCTACCGATCTCGCTGCCACA
ACCCTTGGTCTGGTTGGG
Found at i:14989845 original size:158 final size:158
Alignment explanation
Indices: 14989588--14989952 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 158
14989578 AACTCCGTAT
* * * *
14989588 GCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAG
1 GCTTAGACTGGA-ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACAGACGCTCAG
* * * * *
14989653 CCGGCCAGAGAGGCATAATGCGTAAGATGGGGATCAG-CTCAGTCCCCC-CTGCATGCTGTCGAT
65 CCGGCCAGAAAAGCATAATGCGCAAGATGAGGATCAGCCT-AGTCCCCCTCTGCATGCTGCCGAT
* *
14989716 CCTGCTGCCGA-AACCCTCAGTCCAGTCT-GA
129 CCCGCTGCC-ACAACACTCAGTCCAG-CTGGA
* * * * * *
14989746 TCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACAGACGTTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACAGACGCTCAG
** * * * *
14989811 TTGGCC-GAAAAAGCATAATGCGCAAGCTGAGGATCGGCCTAGTCCCCCTCTGCGTGCTGCCGGT
65 CCGGCCAG-AAAAGCATAATGCGCAAGATGAGGATCAGCCTAGTCCCCCTCTGCATGCTGCCGAT
* *
14989875 CCCGCTGCCACAACACTCGGTCCAGCTGGG
129 CCCGCTGCCACAACACTCAGTCCAGCTGGA
* * *
14989905 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
14989953 GCCGGAGAGG
Statistics
Matches: 169, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 89 0.53
159 78 0.46
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACAGACGCTCAGC
CGGCCAGAAAAGCATAATGCGCAAGATGAGGATCAGCCTAGTCCCCCTCTGCATGCTGCCGATCC
CGCTGCCACAACACTCAGTCCAGCTGGA
Found at i:14989943 original size:159 final size:158
Alignment explanation
Indices: 14989665--14989952 Score: 350
Period size: 159 Copynumber: 1.8 Consensus size: 158
14989655 GGCCAGAGAG
* * * *
14989665 GCATAATGCGTAAGATGGGGATCAGCTCAGTCCCCCCTGCATGCTGTCGATCCTGCTGCCGAAAC
1 GCATAATGCGCAAGATGAGGATCAGCTCAGTCCCCCCTGCATGCTGCCGATCCCGCTGCCGAAAC
* * * ** *
14989730 CCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGA
66 ACTCAGTCCAGTCTGAGCTTAGACTGGGAATGAAATCCCTATGCATAAGCCAACCCATGAAACGA
14989795 GCGTACAGACGTTGAGTTGGCCGAAAAA
131 GCGTACAGACGTTGAGTTGGCCGAAAAA
* * * *
14989823 GCATAATGCGCAAGCTGAGGATCGGC-CTAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCC-AC
1 GCATAATGCGCAAGATGAGGATCAGCTC-AGTCCCCC-CTGCATGCTGCCGATCCCGCTGCCGA-
* * *
14989886 AACACTCGGTCCAG-CTGGGGCTTAGACAT-GGAATGAAATCCCTATGCCTAAGCCAACCCATGA
63 AACACTCAGTCCAGTCT-GAGCTTAGAC-TGGGAATGAAATCCCTATGCATAAGCCAACCCATGA
14989949 AACG
126 AACG
14989953 GCCGGAGAGG
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
157 1 0.01
158 33 0.31
159 73 0.68
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
GCATAATGCGCAAGATGAGGATCAGCTCAGTCCCCCCTGCATGCTGCCGATCCCGCTGCCGAAAC
ACTCAGTCCAGTCTGAGCTTAGACTGGGAATGAAATCCCTATGCATAAGCCAACCCATGAAACGA
GCGTACAGACGTTGAGTTGGCCGAAAAA
Found at i:14990121 original size:26 final size:26
Alignment explanation
Indices: 14990070--14990122 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14990060 CCGGTCCGAT
* * *
14990070 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
14990096 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
14990122 C
1 C
14990123 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:14990972 original size:158 final size:157
Alignment explanation
Indices: 14990704--14991277 Score: 595
Period size: 158 Copynumber: 3.6 Consensus size: 157
14990694 TCTTAGATTG
* ** *
14990704 GGAATGAACTCCGTATGCCTAA-CTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGA
* * ** *
14990768 GAGGCATAATGCACAA-ACGAGGATCGGTCCGGTACCTTTCTGCGTGCTGTCGGTCTCGCTGCCA
65 GAGGCAGAATGCACAAGACGAGGATCGGCCCGGT-CCCCTCTACGTGCTGTCGGTC-CGCTGCCA
* *
14990832 CAACCTTCGGTCCGGTTGGCGCCTAGACAT
128 CAACCTTCGGTCCGGTTGGAGCTTAGACAT
* ** * *
14990862 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAG
* * ** * * * **
14990927 AGGCAGAATGCACAAGTCGGGGATATGCCCGGTCCCCCCTACGTGCTGTCGATCCTGATGCTGCA
66 AGGCAGAATGCACAAGACGAGGATCGGCCCGGTCCCCTCTACGTGCTGTCGGTCC-GCTGCCACA
*
14990992 ACCTTCGGTCCGGTCT-GATCTTAGAC-T
130 ACCTTCGGTCCGGT-TGGAGCTTAGACAT
* * * * * * *
14991019 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGACCCGACCGAA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGA
* * * * * *
14991084 GAGGCATAATGCTCAAGCCGAGGATCGGCCCGGTCCCCTCTACGTGTTGCCAGTCCCGCTGCCAC
65 GAGGCAGAATGCACAAGACGAGGATCGGCCCGGTCCCCTCTACGTGCTGTCGGT-CCGCTGCCAC
* * *
14991149 AACCCTCGGTCCGATTGGGGCTTAGACAT
129 AACCTTCGGTCCGGTTGGAGCTTAGACAT
* * * * *
14991178 GGAATGAACTCCCTATGCCTAAGCCAACACACGAAATGGGCGTGCGGGCACTCAACCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAG
*
14991243 AGGCAGAATG--CAAG-CGAGGATCGGCCTGGTTCCCC
66 AGGCAGAATGCACAAGACGAGGATCGGCCCGG-TCCCC
14991278 CTGCGTACTG
Statistics
Matches: 342, Mismatches: 65, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
155 14 0.04
156 9 0.03
157 3 0.01
158 299 0.87
159 17 0.05
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAG
AGGCAGAATGCACAAGACGAGGATCGGCCCGGTCCCCTCTACGTGCTGTCGGTCCGCTGCCACAA
CCTTCGGTCCGGTTGGAGCTTAGACAT
Found at i:14991223 original size:316 final size:313
Alignment explanation
Indices: 14990637--14991343 Score: 864
Period size: 316 Copynumber: 2.2 Consensus size: 313
14990627 ATCGGCACCA
* * * * * *
14990637 GCCCAGTCCCCCCTACGTTCTATCGATCCTGCTG-TCGCAACCCTCGGTCTGGTCCGATCTTAGA
1 GCCCGGTCCCCCCTACGTACTGTCGATCCTGATGCT-GCAACCCTCGGTCCGGTCTGATCTTAGA
* * * ** * *
14990701 TTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCGGCCG
65 CTGGGAATGAACTCCGTATGCATAACTCAACCCACAAAACGAGCGTGCAGGCACTGACCCGACCG
* * ** * * * *
14990766 GAGAGGCATAATGCACAAACGAGGATCGGTCCGGTACCTTTCTGCGTGCTGTCGGTCTCGCTGCC
130 AAGAGGCATAATGCACAAACGAGGATCGGCCCGGTACCCCTCTACGTGCTGCCAGTCCCGCTGCC
* * * * *
14990831 ACAACCTTCGGTCCGGTTGGCGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
195 ACAACCCTCGGTCCGATTGGCGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGA
** * * * *
14990896 AACGAGCGTGCGGGTGCTCAGCCGGTCAGAGAGGCAGAATGCACAAGTCGGGGATAT
260 AACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATG--CAAG-CGAGGATAG
* *
14990953 GCCCGGTCCCCCCTACGTGCTGTCGATCCTGATGCTGCAACCTTCGGTCCGGTCTGATCTTAGAC
1 GCCCGGTCCCCCCTACGTACTGTCGATCCTGATGCTGCAACCCTCGGTCCGGTCTGATCTTAGAC
* *
14991018 TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGACCCGACCGA
66 TGGGAATGAACTCCGTATGCATAACTCAACCCACAAAACGAGCGTGCAGGCACTGACCCGACCGA
* * *
14991083 AGAGGCATAATGCTCAAGCCGAGGATCGGCCCGGT-CCCCTCTACGTGTTGCCAGTCCCGCTGCC
131 AGAGGCATAATGCACAA-ACGAGGATCGGCCCGGTACCCCTCTACGTGCTGCCAGTCCCGCTGCC
* *
14991147 ACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGA
195 ACAACCCTCGGTCCGATTGGCGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGA
* * * *
14991212 AATGGGCGTGCGGGCACTCAACCGGCCGGAGAGGCAGAATGCAAGCGAGGATCG
260 AACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATGCAAGCGAGGATAG
* * * * * *
14991266 GCCTGGTTCCCCCTGCGTACTGCCAATCCTGCTAT-C-GTAACCCTCGGTCCGGTCTGATCTTAG
1 GCCCGGTCCCCCCTACGTACTGTCGATCCTG--ATGCTGCAACCCTCGGTCCGGTCTGATCTTAG
14991329 ACTGGGAATGAACTC
64 ACTGGGAATGAACTC
14991344 TGTACGCTTA
Statistics
Matches: 335, Mismatches: 52, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
313 71 0.21
314 5 0.01
315 2 0.01
316 241 0.72
317 16 0.05
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (313 bp):
GCCCGGTCCCCCCTACGTACTGTCGATCCTGATGCTGCAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCATAACTCAACCCACAAAACGAGCGTGCAGGCACTGACCCGACCGA
AGAGGCATAATGCACAAACGAGGATCGGCCCGGTACCCCTCTACGTGCTGCCAGTCCCGCTGCCA
CAACCCTCGGTCCGATTGGCGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAA
ACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATGCAAGCGAGGATAG
Found at i:14991400 original size:26 final size:26
Alignment explanation
Indices: 14991326--14991405 Score: 108
Period size: 26 Copynumber: 3.1 Consensus size: 26
14991316 GGTCTGATCT
* * *
14991326 TAGACTGGGAATGAACTCTGTACGCT
1 TAGACTGGGAATGAACTCCGTATGCC
*
14991352 TAGACTGTTGAA-GAACTCCGTATGCC
1 TAGACTG-GGAATGAACTCCGTATGCC
14991378 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14991404 TA
1 TA
14991406 AGCCAACCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 3 0.06
26 41 0.87
27 3 0.06
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:14991668 original size:158 final size:157
Alignment explanation
Indices: 14991378--14991867 Score: 570
Period size: 158 Copynumber: 3.1 Consensus size: 157
14991368 TCCGTATGCC
** *
14991378 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
14991443 GTCGGAGAGGCAGAATGCGTAAGCTAGGGATTGGCCCAGTCCCCCTTGCGTGCTGTCGATCTTGC
66 GTCGAAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCCTTTGCGTGCTGTCGATCCTGC
* *
14991508 TGCCGTAACCCTCGGTCCGATCTGATCT
131 TGCCGCAACCCTC-GTCCGGTCTGATCT
* * * * * *
14991536 TAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGTGCTAAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
14991601 GCCGAAGAGGCATAATGCGTAAGTTAGGGATCGGCCCGGTCCCTTTTGCGTGCTGTCGGTCCCGC
66 GTCGAAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCCTTTGCGTGCTGTCGATCCTGC
* **
14991666 TGCCACAACCCTCAGTCCGGT-TGGGGCT
131 TGCCGCAACCCTC-GTCCGGTCT-GATCT
* * * * * * *
14991694 TACACAT-GGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGGGCGCGTGAGCGCTCAGCC
1 TAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
14991758 GGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCCTG
65 GGTCGAAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCCTTTGCGTGCTGTCGATCCTG
* * *
14991823 CAGCCGCAACTCTCGTCTGGTCTGATCT
130 CTGCCGCAACCCTCGTCCGGTCTGATCT
*
14991851 TAGACTGGGAATAAACT
1 TAGACTGGGAATGAACT
14991868 TTGTATGCTT
Statistics
Matches: 271, Mismatches: 57, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
156 1 0.00
157 23 0.08
158 246 0.91
159 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
GTCGAAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCCTTTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCGTCCGGTCTGATCT
Found at i:14991885 original size:26 final size:26
Alignment explanation
Indices: 14991849--14991901 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14991839 CTGGTCTGAT
*
14991849 CTTAGACTGGGAATAAACTTTGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
* *
14991875 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
14991901 C
1 C
14991902 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:14993640 original size:11 final size:11
Alignment explanation
Indices: 14993609--14993641 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
14993599 CTGTTAGGCT
14993609 CTCCGACGATG
1 CTCCGACGATG
14993620 CTCC-AGCGATG
1 CTCCGA-CGATG
14993631 CTCCGACGATG
1 CTCCGACGATG
14993642 GTGCCCCGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14994251 original size:26 final size:26
Alignment explanation
Indices: 14994210--14994262 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14994200 CCAGTTCGAT
14994210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14994236 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14994262 C
1 C
14994263 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14995360 original size:159 final size:158
Alignment explanation
Indices: 14995190--14995554 Score: 405
Period size: 158 Copynumber: 2.3 Consensus size: 158
14995180 CCGATCGAAA
* * * * *
14995190 AGGCATAATGCGCAAGCCGGCGATTGACCTGGTCCCACTCTGCGTGCTGCCGGTCCCGCTGCCAT
1 AGGCAGAATGCGCAAGCCGGGGATTGACCTGGTCCC-C-CTGCGTGCTGCCGATCCCGCTACCAC
* * **
14995255 AACCCTCGGTCTGGCTAG-GGCTTA-AGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
64 AACCCTCGATCTGGCT-GTGGCTTAGA-CATGGAATGAACTCCCTATGACTAAGCCAACCCACAA
* ** *
14995318 AACGGGCATG-TGGGCACTCAGTCGGCTGGAG
127 AACGGGCATGCAGGGCACTCAACCGGCCGGAG
* * * * **
14995349 AGGCAGAATGCGCAAGTCGGGGA-TCAGCCCGGTCCCCCCGACGTGCTTTCGATCCCGCTACCAC
1 AGGCAGAATGCGCAAGCCGGGGATTGA-CCTGGTCCCCCTG-CGTGCTGCCGATCCCGCTACCAC
14995413 AACCCTCGATCTGGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAA
64 AACCCTCGATCTGGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAA
*
14995478 CGGGCGTGCAGGGCACTCAACCGGCCGGAG
129 CGGGCATGCAGGGCACTCAACCGGCCGGAG
* * * * * *
14995508 AGGTAGAATGTGGAAGCTGGGGATCGACTTGGTCCCCCCTGCGTGCT
1 AGGCAGAATGCGCAAGCCGGGGATTGACCTGGT-CCCCCTGCGTGCT
14995555 TTTGATCCTA
Statistics
Matches: 169, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 85 0.50
159 74 0.44
160 7 0.04
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
AGGCAGAATGCGCAAGCCGGGGATTGACCTGGTCCCCCTGCGTGCTGCCGATCCCGCTACCACAA
CCCTCGATCTGGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAACG
GGCATGCAGGGCACTCAACCGGCCGGAG
Found at i:14995552 original size:317 final size:317
Alignment explanation
Indices: 14994966--14995554 Score: 659
Period size: 317 Copynumber: 1.9 Consensus size: 317
14994956 TGCTTAGACG
* * ** **
14994966 TGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGTGTGTGGGTGCTCAGCCGACCAGA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCACTCAGCCGACCAGA
* ** * ****
14995031 GAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCTCCCTTGCGTGCTGTCGATCCTGCTGTGGC
66 GAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCTCCCCCGCGTGCTGTCGATCCCGCTACCAC
* ** * *
14995096 AACCCTAGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAATCAGCCCACAAAA
131 AACCCTAGATCCAGGCTGATCTTAGACTGGGAATGAACTCCCTATGCATAAACCAACCCACAAAA
* * * * * *
14995161 CAAGCGTGCGGGCGCTGAGCCGATCGAAAAGGCATAATGCGCAAGCCGGCGATTGACCTGGTCCC
196 CAAGCGTGCGGGCACTCAACCGACCGAAAAGGCAGAATGCGCAAGCCGGCGATCGACCTGGTCCC
*
14995226 ACTCTGCGTGCTGCCGGTCCCGCTGCCATAACCCTCGGTCTGGCTAGGGCTTAAGCA
261 ACCCTGCGTGCTGCCGGTCCCGCTGCCATAACCCTCGGTCTGGCTAGGGCTTAAGCA
* * * * **
14995283 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGTGGGCACTCAGTCGGCTGGA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCACTCAGCCGACCAGA
*
14995348 GAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTC-CCCCCGACGTGCTTTCGATCCCGCTACCA
66 GAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCTCCCCCG-CGTGCTGTCGATCCCGCTACCA
* * *
14995412 CAACCCTCGAT-CTGGCTG-TGGCTTAGACAT-GGAATGAACTCCCTATG-ACTAAGCCAACCCA
130 CAACCCTAGATCCAGGCTGAT--CTTAGAC-TGGGAATGAACTCCCTATGCA-TAAACCAACCCA
** * * * * * * * * *
14995473 CAAAACGGGCGTGCAGGGCACTCAACCGGCCGGAGAGGTAGAATGTGGAAGCTGGGGATCGACTT
191 CAAAACAAGCGTGC-GGGCACTCAACCGACCGAAAAGGCAGAATGCGCAAGCCGGCGATCGACCT
14995538 GGTCCC-CCCTGCGTGCT
255 GGTCCCACCCTGCGTGCT
14995555 TTTGATCCTA
Statistics
Matches: 219, Mismatches: 47, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
315 1 0.00
316 10 0.05
317 166 0.76
318 42 0.19
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (317 bp):
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCACTCAGCCGACCAGA
GAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCTCCCCCGCGTGCTGTCGATCCCGCTACCAC
AACCCTAGATCCAGGCTGATCTTAGACTGGGAATGAACTCCCTATGCATAAACCAACCCACAAAA
CAAGCGTGCGGGCACTCAACCGACCGAAAAGGCAGAATGCGCAAGCCGGCGATCGACCTGGTCCC
ACCCTGCGTGCTGCCGGTCCCGCTGCCATAACCCTCGGTCTGGCTAGGGCTTAAGCA
Found at i:14995578 original size:159 final size:158
Alignment explanation
Indices: 14995251--14995579 Score: 398
Period size: 159 Copynumber: 2.1 Consensus size: 158
14995241 GGTCCCGCTG
* * *
14995251 CCATAACCCTCGGTCTGGCTAGGGCTTAAGCATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCATAACCCTCGATCTGGCTAGGGCTTAAGCATGGAATGAACTCCCTATGACTAAGCCAACCCAC
* * ** *
14995316 GAAACGGGCATGTGGGCACTCAGTCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGG
66 AAAACGGGCATGAGGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGG
*
14995381 TCCCCCCGACGTGCTTTCGATCCCGCTA
131 TCCCCCCGACGTGCTTTCGATCCCACTA
*
14995409 CCACAACCCTCGATCTGGCT-GTGGCTT-AGACATGGAATGAACTCCCTATGACTAAGCCAACCC
1 CCATAACCCTCGATCTGGCTAG-GGCTTAAG-CATGGAATGAACTCCCTATGACTAAGCCAACCC
* * * *
14995472 ACAAAACGGGCGTGCAGGGCACTCAACCGGCCGGAGAGGTAGAATGTGGAAG-CTGGGGATC-GA
64 ACAAAACGGGCATG-AGGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGTC-GGGGATCAG-
** * *
14995535 CTTGGTCCCCCCTG-CGTGCTTTTGATCCTACTA
126 CCCGGTCCCCCC-GACGTGCTTTCGATCCCACTA
*
14995568 CCGTAACCCTCG
1 CCATAACCCTCG
14995580 GTCCGATCCG
Statistics
Matches: 145, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
157 3 0.02
158 68 0.47
159 73 0.50
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CCATAACCCTCGATCTGGCTAGGGCTTAAGCATGGAATGAACTCCCTATGACTAAGCCAACCCAC
AAAACGGGCATGAGGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGG
TCCCCCCGACGTGCTTTCGATCCCACTA
Found at i:14995628 original size:26 final size:26
Alignment explanation
Indices: 14995592--14995644 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14995582 CCGATCCGAT
14995592 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
14995618 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14995644 C
1 C
14995645 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14995997 original size:26 final size:26
Alignment explanation
Indices: 14995960--14996011 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14995950 CGATCTAATT
*
14995960 TTAGACTGGGAATGAACTCTGCATGC
1 TTAGACTGGGAAGGAACTCTGCATGC
*
14995986 TTAGACAT-GGAAGGAACTCTGTATGC
1 TTAGAC-TGGGAAGGAACTCTGCATGC
14996012 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAGGAACTCTGCATGC
Found at i:14996187 original size:197 final size:196
Alignment explanation
Indices: 14995859--14996310 Score: 514
Period size: 197 Copynumber: 2.3 Consensus size: 196
14995849 TCAGTCGGCT
* * * * * *
14995859 GGAGAGGCAGAATGCGTAAGCCGGGGATCAACTCGGTCCCCCCTGCATGCTATCGATCCTGCTGC
1 GGAGAGGCAGAAAGCGCAAGCCGGGGATCAACCCAGTCCCCCCTGCATGCTACCGATCCTACTGC
* * * *
14995924 TGGTCCTGCTGCCACAACCCTCGATCCGATCTAATTTTAGACTGGGAATGAACTCTGCATGCTTA
66 TGGTCCTGCTACCACAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAACTCTGCATGCTTA
** * * * * *
14995989 GACATGGAAGGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGTGCTCAGCCGAT
131 GACATGGAAGGAACTCCATATGCCTAAGCCAACCCACAAAACGACCATACGGGTGCTCAACCGAC
14996054 C
196 C
* * *
14996055 GGAGAGGCAGAAAGTGCAAGCCGGGGATCAGCCCAGTCCCCCCCTGCATGCTGCCGATCCTACTG
1 GGAGAGGCAGAAAGCGCAAGCCGGGGATCAACCCAGT-CCCCCCTGCATGCTACCGATCCTACTG
* * * *
14996120 CTGGTCCTGCTACCGCAACCTTCGATCGGATCCGATCTTAGACTAGGAATGAACT-T-CATACGC
65 CTGGTCCTGCTACCACAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAACTCTGCAT--GC
* ** *
14996183 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACCATGCGGGTGCTCAACC
128 TTAGACATGGAAGGAACTCCATATGCCTAAGCCAACCCACAAAACGACCATACGGGTGCTCAACC
14996248 GACC
193 GACC
* * ** * * * *
14996252 GGAGAGCCAGAATGCATAAGCCAGGGATCGACCC-GATCCCCCCCTTCATGCTATCGATC
1 GGAGAGGCAGAAAGCGCAAGCCGGGGATCAACCCAG-T-CCCCCCTGCATGCTACCGATC
14996311 TTGCTGCCGC
Statistics
Matches: 213, Mismatches: 39, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
195 3 0.01
196 33 0.15
197 177 0.83
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (196 bp):
GGAGAGGCAGAAAGCGCAAGCCGGGGATCAACCCAGTCCCCCCTGCATGCTACCGATCCTACTGC
TGGTCCTGCTACCACAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAACTCTGCATGCTTA
GACATGGAAGGAACTCCATATGCCTAAGCCAACCCACAAAACGACCATACGGGTGCTCAACCGAC
C
Found at i:14996194 original size:26 final size:26
Alignment explanation
Indices: 14996156--14996205 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14996146 CGGATCCGAT
*
14996156 CTTAGACTAGGAATGAACTTCATACG
1 CTTAGACTAGGAATGAACTCCATACG
14996182 CTTAGAC-ATGGAATGAACTCCATA
1 CTTAGACTA-GGAATGAACTCCATA
14996206 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATACG
Found at i:14996699 original size:26 final size:26
Alignment explanation
Indices: 14996658--14996710 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14996648 TTGGTCCGAT
14996658 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14996684 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
14996710 C
1 C
14996711 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15003858 original size:26 final size:26
Alignment explanation
Indices: 15003829--15003881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15003819 CCCATCCGAT
15003829 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15003855 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15003881 C
1 C
15003882 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15004578 original size:26 final size:26
Alignment explanation
Indices: 15004549--15004601 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15004539 CCAGTCCGAT
15004549 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15004575 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15004601 C
1 C
15004602 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15005160 original size:525 final size:530
Alignment explanation
Indices: 15004038--15005189 Score: 1455
Period size: 524 Copynumber: 2.2 Consensus size: 530
15004028 TCCGGCTGGG
* * *
15004038 GCTTAGACATGGAATGAACTTCGTTTGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
* * * * * ** * * *
15004103 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGTCGGTCCGGTCCCCCCTGCGTGCTGTTGATCCT
66 CCGGCCGAAGAGGTAGAATGCGCAAGCCGGGACCGGTCCGATCCCACCTACGTGCTGTTGATCCT
* *
15004168 GCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAC
131 GCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAAC
* *
15004233 CCACGAAACGACAGTCCGGGCATTCAGTCTACCGTAGAGGCCGATCGGAGAGGCATAATGTGCAA
196 CCACGAAACGACAGTCCGGG-----AGTCTA-CGTAGAGGCCGACCGGAGAGGCATAATGCGCAA
* ** * * ** * *
15004298 GTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGTCGGTCTTGCTGTAACAAC
255 GCCGAAGATCAGCCCGGTCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCTGCTGCAACAAC
* * * *
15004363 CCTTAGTCCGACTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACGA
320 CCTCAGTCCGACTGGGACTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAA
* * * * * *
15004428 GCGTGCGGGCGCTCAACTGACTGGAGAGGCAGAATGTGCAAGCCACGAATTGGCCTGGTCCCTCC
385 GCGTGCGGCCACTCAACTGACCGGAGAGGCAGAATGCGCAAGCCACGAATTGGCCTGATCCCCCC
* *
15004493 TGCGTGCTGTCGATCCTGTGCTGGTCCTGCTATTACAACCCTTGGTCCAGTCCGATCTTAGACTG
450 TGCGTGCTGTCGATCCTGTGCTGGTCCTACTATTACAACCCTTGGTCAAGTCCGATCTTAGACTG
15004558 GGAATGAACTCCGTAT
515 GGAATGAACTCCGTAT
* * * * * *
15004574 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
* *
15004639 CCGGCCGAAGAGGTAGAATGCACAAGCCGAGGACCGG-CTCGATCCCAGCTACGTGCTGTTGATC
66 CCGGCCGAAGAGGTAGAATGCGCAAGCCG-GGACCGGTC-CGATCCCACCTACGTGCTGTTGATC
* * ** * * *
15004703 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAGTCTGTATGCATAAGTCA
129 CTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAATCA
* * * * * *
15004768 ACCCATGAAACGAGC-GTGC-GG-G-CT-C-T-GA-GCCTACCGGAGGGGCATGATGCGTAAGCC
194 ACCCACGAAACGA-CAGTCCGGGAGTCTACGTAGAGGCCGACCGGAGAGGCATAATGCGCAAGCC
* * * *
15004825 GAAGATCGGCCCGGTCCCTCTCTGCATGCTATCGATCTCGCTACCGGTCCTGCTGCAACAACCCT
258 GAAGATCAGCCCGGTCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCTGCTGCAACAACCCT
* * *
15004890 CGGTCCGACTGGGGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGTG
323 CAGTCCGACTGGGACTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGCG
* *
15004955 TGCGGCCACTCAACTGGCCGGAGAGGCAGAATGCGCAAGCCACGGATTGG-CTCGATCCCCCCCT
388 TGCGGCCACTCAACTGACCGGAGAGGCAGAATGCGCAAGCCACGAATTGGCCT-GAT-CCCCCCT
*
15005019 GCGTGCTGTCGATCCTGTGCTGGTCCTACT-TTCGCAACCCTTGGTCAAGTCCGAT-TATAGACT
451 GCGTGCTGTCGATCCTGTGCTGGTCCTACTATT-ACAACCCTTGGTCAAGTCCGATCT-TAGACT
*
15005082 GGGAATGAACTCTGTAT
514 GGGAATGAACTCCGTAT
*
15005099 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
*
15005164 CCGGCTGAAGAGGTAGAATGCGCAAG
66 CCGGCCGAAGAGGTAGAATGCGCAAG
15005190 TCGGAGATTG
Statistics
Matches: 531, Mismatches: 78, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
523 2 0.00
524 182 0.34
525 161 0.30
526 1 0.00
527 1 0.00
529 2 0.00
530 1 0.00
536 83 0.16
537 97 0.18
538 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (530 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
CCGGCCGAAGAGGTAGAATGCGCAAGCCGGGACCGGTCCGATCCCACCTACGTGCTGTTGATCCT
GCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAAC
CCACGAAACGACAGTCCGGGAGTCTACGTAGAGGCCGACCGGAGAGGCATAATGCGCAAGCCGAA
GATCAGCCCGGTCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCTGCTGCAACAACCCTCAG
TCCGACTGGGACTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGC
GGCCACTCAACTGACCGGAGAGGCAGAATGCGCAAGCCACGAATTGGCCTGATCCCCCCTGCGTG
CTGTCGATCCTGTGCTGGTCCTACTATTACAACCCTTGGTCAAGTCCGATCTTAGACTGGGAATG
AACTCCGTAT
Found at i:15005218 original size:525 final size:530
Alignment explanation
Indices: 15004038--15005230 Score: 1476
Period size: 525 Copynumber: 2.2 Consensus size: 530
15004028 TCCGGCTGGG
* * *
15004038 GCTTAGACATGGAATGAACTTCGTTTGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
* * * * * * *
15004103 TCGACCGGAGAGGCAGAATGCGCAAGTCGG-GGTCGGTCCGGTCCCCCCTGCGTGCTGTTGATCC
66 CCGGCCGAAGAGGTAGAATGCGCAAGTCGGAGATCGCT-CGGTCCCCCCTACGTGCTGTTGATCC
* *
15004167 TGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAA
130 TGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAA
* *
15004232 CCCACGAAACGACAGTCCGGGCATTCAGTCTACCGTAGAGGCCGATCGGAGAGGCATAATGTGCA
195 CCCACGAAACGACAGTCCGGG-----AGTCTA-CGTAGAGGCCGACCGGAGAGGCATAATGCGCA
* ** * * ** * *
15004297 AGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGTCGGTCTTGCTGTAACAA
254 AGCCGAAGATCAGCCCGGTCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCTGCTGCAACAA
* * * *
15004362 CCCTTAGTCCGACTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACG
319 CCCTCAGTCCGACTGGGACTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACA
* * * * * *
15004427 AGCGTGCGGGCGCTCAACTGACTGGAGAGGCAGAATGTGCAAGCCACGAATTGGCCTGGTCCCTC
384 AGCGTGCGGCCACTCAACTGACCGGAGAGGCAGAATGCGCAAGCCACGAATTGGCCTGATCCCCC
* *
15004492 CTGCGTGCTGTCGATCCTGTGCTGGTCCTGCTATTACAACCCTTGGTCCAGTCCGATCTTAGACT
449 CTGCGTGCTGTCGATCCTGTGCTGGTCCTACTATTACAACCCTTGGTCAAGTCCGATCTTAGACT
15004557 GGGAATGAACTCCGTAT
514 GGGAATGAACTCCGTAT
* * * * * *
15004574 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
* * * * **
15004639 CCGGCCGAAGAGGTAGAATGCACAAG-CCGAGGACCGGCTCGATCCCAGCTACGTGCTGTTGATC
66 CCGGCCGAAGAGGTAGAATGCGCAAGTCGGA-GATC-GCTCGGTCCCCCCTACGTGCTGTTGATC
* * ** * * *
15004703 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAGTCTGTATGCATAAGTCA
129 CTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAATCA
* * * * * *
15004768 ACCCATGAAACGAGC-GTGC-GG-G-CT-C-T-GA-GCCTACCGGAGGGGCATGATGCGTAAGCC
194 ACCCACGAAACGA-CAGTCCGGGAGTCTACGTAGAGGCCGACCGGAGAGGCATAATGCGCAAGCC
* * * *
15004825 GAAGATCGGCCCGGTCCCTCTCTGCATGCTATCGATCTCGCTACCGGTCCTGCTGCAACAACCCT
258 GAAGATCAGCCCGGTCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCTGCTGCAACAACCCT
* * *
15004890 CGGTCCGACTGGGGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGTG
323 CAGTCCGACTGGGACTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGCG
* *
15004955 TGCGGCCACTCAACTGGCCGGAGAGGCAGAATGCGCAAGCCACGGATTGG-CTCGATCCCCCCCT
388 TGCGGCCACTCAACTGACCGGAGAGGCAGAATGCGCAAGCCACGAATTGGCCT-GAT-CCCCCCT
*
15005019 GCGTGCTGTCGATCCTGTGCTGGTCCTACT-TTCGCAACCCTTGGTCAAGTCCGAT-TATAGACT
451 GCGTGCTGTCGATCCTGTGCTGGTCCTACTATT-ACAACCCTTGGTCAAGTCCGATCT-TAGACT
*
15005082 GGGAATGAACTCTGTAT
514 GGGAATGAACTCCGTAT
*
15005099 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
* * **
15005164 CCGGCTGAAGAGGTAGAATGCGCAAGTCGGAGATTGACTCGGTCCCCCCTACGTGCTACTGATCC
66 CCGGCCGAAGAGGTAGAATGCGCAAGTCGGAGATCG-CTCGGTCCCCCCTACGTGCTGTTGATCC
15005229 TG
130 TG
15005231 TTGCTGGTCC
Statistics
Matches: 560, Mismatches: 87, Indels: 31
0.83 0.13 0.05
Matches are distributed among these distances:
523 2 0.00
524 183 0.33
525 188 0.34
526 4 0.01
527 1 0.00
529 2 0.00
530 1 0.00
535 2 0.00
536 80 0.14
537 94 0.17
538 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (530 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGTGCTCAG
CCGGCCGAAGAGGTAGAATGCGCAAGTCGGAGATCGCTCGGTCCCCCCTACGTGCTGTTGATCCT
GCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAATCAAC
CCACGAAACGACAGTCCGGGAGTCTACGTAGAGGCCGACCGGAGAGGCATAATGCGCAAGCCGAA
GATCAGCCCGGTCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCTGCTGCAACAACCCTCAG
TCCGACTGGGACTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGC
GGCCACTCAACTGACCGGAGAGGCAGAATGCGCAAGCCACGAATTGGCCTGATCCCCCCTGCGTG
CTGTCGATCCTGTGCTGGTCCTACTATTACAACCCTTGGTCAAGTCCGATCTTAGACTGGGAATG
AACTCCGTAT
Found at i:15005238 original size:196 final size:196
Alignment explanation
Indices: 15004903--15005359 Score: 539
Period size: 196 Copynumber: 2.3 Consensus size: 196
15004893 TCCGACTGGG
* ** * * *
15004903 GCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGCCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAG
* * * * *
15004968 CTGGCCGGAGAGGCAGAATGCGCAAGCCACGGATTGGCTCGATCCCCCCCTGCGTGCTGTCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCACGGATTGACTCGATCCCCCCCTACGTGCTCTCGATC
* * *
15005033 CTGTGCTGGTCCTACTTTC-GCAACCCT-TGGTCAAGTCCGAT-TATAGACTGGGAATGAACTCT
131 CTGTGCTGGTCCTAC-TGCGGCAACCCTCAGGTC-AGTCCGATCT-TAGACTGGGAATGAACTCC
15005095 GTAT
193 GTAT
* * *
15005099 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAG
* * * * *
15005164 CCGGCTGAAGAGGTAGAATGCGCAAGTC-GGAGATTGACTCGGT-CCCCCCTACGTGCTACT-GA
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCACG-GATTGACTCGATCCCCCCCTACGTGCT-CTCGA
* * * * *
15005226 TCCTGTTGCTGGTCCTGCTGCGGTAACTCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCC
129 TCCTG-TGCTGGTCCTACTGCGGCAACCCTCAGGTCAGTCCGATCTTAGACTGGGAATGAACTCC
15005291 GTAT
193 GTAT
* * * *
15005295 GCTTAGGCATGGAATGAACTCCGTCTGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAG
15005360 TCGACCTGAG
Statistics
Matches: 221, Mismatches: 34, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
195 23 0.10
196 194 0.88
197 4 0.02
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCACGGATTGACTCGATCCCCCCCTACGTGCTCTCGATC
CTGTGCTGGTCCTACTGCGGCAACCCTCAGGTCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
T
Found at i:15005688 original size:26 final size:26
Alignment explanation
Indices: 15005650--15005702 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15005640 CCGGTCTAAT
*
15005650 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15005676 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15005702 C
1 C
15005703 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15005980 original size:159 final size:157
Alignment explanation
Indices: 15005675--15006283 Score: 481
Period size: 159 Copynumber: 3.8 Consensus size: 157
15005665 AACTCTGTAT
* * * * * *** ** * *
15005675 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAAGCCATGAAACAAGCGTGAGGGCGTTAAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCCGGC-CTCAG
* * * * * ** ** * * *
15005740 CCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGATCAAATCCCCCTCTGCGTGCTGCCGGTC
65 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATC
* *
15005805 CTACAACCACAACCCTCGATCCGGTTGGG
129 CTGCTACCACAACCCTCGATCCGGTTGGG
* *
15005834 GCTTAGACAAGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATGGGCATGCCGGCACTCAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCCGGC-CTCAG
* *
15005899 TCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCCCGATCCACCCCTACGTGCTGTCGATC
65 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCC-CCCCTACGTGCTGTCGATC
* * *
15005964 TTGCTACCGCAACCCTC-AGTCCGGTCT-GA
129 CTGCTACCACAACCCTCGA-TCCGGT-TGGG
* * * * ** * * * * *
15005993 TCTGAGACTAGGAATGAACACTGTATGCCTAAGTCAACCCACGAAATGAGCGTG-CGGCCGCTGA
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCCGGCCTCAGT
* * * * * * *
15006057 CCAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCTCCCTCTGCGTGCTG-CCAGT
66 CGA-CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATC-CCCCCTACGTGCTGTCGA-T
* * * * *
15006121 CCCGCTGCCACAACCCTTGGTCCGCTTGGG
128 CCTGCTACCACAACCCTCGATCCGGTTGGG
* * * ** * *
15006151 GCTTAGACATGGAATGACCTCCCTATGCCCAAGCCAACCCATTAAATGGGCGTGCAGGTGCTCAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCCGG-CCTCAG
* ** * *
15006216 TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGAT-CCCCTTACGTGCTGTCGATCC
65 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
15006280 TGCT
130 TGCT
15006284 GCTGGTCCTA
Statistics
Matches: 344, Mismatches: 95, Indels: 24
0.74 0.21 0.05
Matches are distributed among these distances:
157 25 0.07
158 114 0.33
159 196 0.57
160 9 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCCGGCCTCAGT
CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
GCTACCACAACCCTCGATCCGGTTGGG
Found at i:15008637 original size:26 final size:26
Alignment explanation
Indices: 15008608--15008659 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15008598 TGGTCTGATA
*
15008608 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
15008634 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15008660 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15008838 original size:26 final size:26
Alignment explanation
Indices: 15008802--15008854 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15008792 TCGGTCTGAT
15008802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15008828 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15008854 C
1 C
15008855 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15009197 original size:26 final size:26
Alignment explanation
Indices: 15009159--15009263 Score: 167
Period size: 26 Copynumber: 4.0 Consensus size: 26
15009149 AACCCTCGAT
* *
15009159 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
15009185 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
*
15009211 CTTAGACATGGAATAAACTCCATATG
1 CTTAGACATGGAATAAACTCCGTATG
15009237 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
15009263 C
1 C
15009264 CTAAGCCAAC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
26 73 0.99
27 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:15009925 original size:26 final size:26
Alignment explanation
Indices: 15009896--15009945 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15009886 CTGGTCCGAT
15009896 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15009922 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
15009946 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15011095 original size:26 final size:26
Alignment explanation
Indices: 15011044--15011096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15011034 CTGATTCGAT
*
15011044 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15011070 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15011096 C
1 C
15011097 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15011784 original size:26 final size:26
Alignment explanation
Indices: 15011755--15011807 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15011745 CCGATCCGAT
15011755 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15011781 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15011807 C
1 C
15011808 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15011915 original size:184 final size:182
Alignment explanation
Indices: 15011705--15012153 Score: 524
Period size: 188 Copynumber: 2.4 Consensus size: 182
15011695 CAGCTTGGTC
15011705 CCCCCTACATGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATG
1 CCCCCTACATGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATG
* *
15011770 AACTCCGTATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTC-AACCCACGAAACAAGCGT
66 AACTCCGTATGCTT-GACAT-GGAATAAACTCTGTATGCCTAAG-CGAACCCACGAAACAAGCGT
* * * ** *
15011833 ACGGGTGCTCAACCGATCGAAGAGGCAGAATGTGCAAGCTGGGGATTGGCCCGGT
128 ACGGGCGCTCAACCGACCGAAGAGGCAGAATGTGCAAGCCGGGGACCGACCCGGT
* * * ** *
15011888 CCCCCTTACGTGCTGCCGATTCTGCTGCCGTAACCCTCGATCTGATCCGATCCGATCTTAGAGTG
1 CCCCC-TACATGCTACCGATCCTGCTGCCACAA-CC-C--TC-GATCCGATCCGATCTTAGACTG
* **
15011953 GGAATGAACTCCGTATGCTTGACATGGAATAAACTCTGTATGCCTAAGCGAACCCATGAAATGAG
60 GGAATGAACTCCGTATGCTTGACATGGAATAAACTCTGTATGCCTAAGCGAACCCACGAAACAAG
* * * * *
15012018 CGTACGGGCGCTCAGCTGGCCGAAGAGGTAGAATGTGCAAGCCGGGGACCGACCCGAT
125 CGTACGGGCGCTCAACCGACCGAAGAGGCAGAATGTGCAAGCCGGGGACCGACCCGGT
* * * * * * *
15012076 GGCCCCTGCATGCTATCGATCCTACTACCACAACCCTCGGTCCGATCCGATCTTATACTGGGAAT
1 -CCCCCTACATGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAAT
*
15012141 GAACTCCATATGC
65 GAACTCCGTATGC
15012154 CTAAGTCAAC
Statistics
Matches: 221, Mismatches: 36, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
183 41 0.19
184 24 0.11
185 2 0.01
186 2 0.01
187 3 0.01
188 103 0.47
189 46 0.21
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (182 bp):
CCCCCTACATGCTACCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTGACATGGAATAAACTCTGTATGCCTAAGCGAACCCACGAAACAAGCGTACG
GGCGCTCAACCGACCGAAGAGGCAGAATGTGCAAGCCGGGGACCGACCCGGT
Found at i:15012489 original size:26 final size:26
Alignment explanation
Indices: 15012446--15012497 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15012436 AGGTTCGATG
*
15012446 TTAGATTGGGAATAAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
* *
15012472 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
15012498 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:15012970 original size:184 final size:184
Alignment explanation
Indices: 15012643--15013009 Score: 427
Period size: 184 Copynumber: 2.0 Consensus size: 184
15012633 CGACTGGGGC
* * *
15012643 TTAGACATGGAATGAGCTCCATATGCCTGAGCCACCCCACGAAACGAGTGTTCGGGCGCTCAACC
1 TTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGTGTTCGGACGCTCAACC
* * *
15012708 GATCAGAGAGGCAGAATACGCAAGTCAGGGATCGACCCGATCCACTCTATGTGCTGTCAATCCTA
66 GATCAGAGAGGCAGAATACGCAAGTCAGGGACCGACCCGATCCACCCTACGTGCTGTCAATCCTA
* *
15012773 CTGCCACAACCCTC-GATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGA
131 CTACCACAACCCTCTG-TCCGATCCAATCTTAGACTGGGAATGAACTCCATATGA
* *
15012827 TTAGGCATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGT-GGACGCTCAAC
1 TTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGTGT-TCGGACGCTCAAC
** * * * ** * *
15012891 CGATTGGAGAGGCAGAATGCGCTAA-TCGGGGACCTGTCTGGTTCC-CCCTACGTGCTGTCGATC
65 CGATCAGAGAGGCAGAATACGC-AAGTCAGGGACC-GACCCGATCCACCCTACGTGCTGTCAATC
* * * ** * * *
15012954 TTGCTATCGTAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
128 CTACTACCACAACCCTCTGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATG
15013010 CCTCAGTCAA
Statistics
Matches: 152, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
184 142 0.93
185 10 0.07
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
TTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGTGTTCGGACGCTCAACC
GATCAGAGAGGCAGAATACGCAAGTCAGGGACCGACCCGATCCACCCTACGTGCTGTCAATCCTA
CTACCACAACCCTCTGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGA
Found at i:15014060 original size:26 final size:26
Alignment explanation
Indices: 15014022--15014074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15014012 GGCTCAAACT
15014022 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15014048 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15014074 C
1 C
15014075 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15015262 original size:196 final size:196
Alignment explanation
Indices: 15014897--15015418 Score: 798
Period size: 196 Copynumber: 2.7 Consensus size: 196
15014887 TCCGCATGGG
* * * * * *
15014897 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTG-CGAGCGCTCA
1 GCTTAGACATGGAAAGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGTCG-GTGCTCA
* * * ** * * * * * * **
15014961 G-CAGGCCGGAAAGGCAAAATACGTAAGCCGAGGATCGA-CTCGATCCCTCCCTGCATGCTGTTT
65 GTC-GGCCGGAGAGGCAGAATGCACAAGTCG-GGAACCAGCCCGGTCCC-CCCTGCGTGCTGTCG
*
15015024 ATCCTGTTGCTAGTCCTGCTATGGTAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTC
127 ATCCTGTTGCTAGTCCTGCTATCGTAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTC
15015089 CATAT
192 CATAT
15015094 GCTTAGACATGGAAAGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGTCGGTGCTCAG
1 GCTTAGACATGGAAAGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGTCGGTGCTCAG
15015159 TCGGCCGGAGAGGCAGAATGCACAAGTCGGGAACCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 TCGGCCGGAGAGGCAGAATGCACAAGTCGGGAACCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
15015224 TGTTGCTAGTCCTGCTATCGTAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTCCATA
131 TGTTGCTAGTCCTGCTATCGTAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTCCATA
15015289 T
196 T
*
15015290 GCTTAGACATGGAAAGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGTCGGTGCTCAG
1 GCTTAGACATGGAAAGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGTCGGTGCTCAG
15015355 TCGGCCGGAGAGGCAGAATGCACAAGTCGGGAACCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
66 TCGGCCGGAGAGGCAGAATGCACAAGTCGGGAACCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
15015419 TTGCTATCGT
Statistics
Matches: 301, Mismatches: 21, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
196 214 0.71
197 84 0.28
198 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAAAGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGTCGGTGCTCAG
TCGGCCGGAGAGGCAGAATGCACAAGTCGGGAACCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGTTGCTAGTCCTGCTATCGTAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTCCATA
T
Found at i:15016116 original size:26 final size:26
Alignment explanation
Indices: 15016087--15016139 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15016077 CCGATCCAAT
15016087 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15016113 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15016139 C
1 C
15016140 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15016301 original size:26 final size:26
Alignment explanation
Indices: 15016272--15016324 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15016262 CTGATCTGAT
15016272 CTTAGAC-TAGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
15016298 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
15016324 C
1 C
15016325 CCAAGCCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:15016413 original size:381 final size:387
Alignment explanation
Indices: 15015922--15016812 Score: 990
Period size: 381 Copynumber: 2.3 Consensus size: 387
15015912 TGGGGCTAAC
* * * * * *
15015922 ACATGGAATAAAC-TCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAACCGAC
1 ACATGGAATGAACTTC-GTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCGCTCGACCGAC
* * ** * *
15015986 CGGAGAGGTAGAATGTGCAAGCCAGGGATCGGC-CTAATCCCCCCTGCGTGCTGTCGATCCTGCT
65 CGGAGAGGTAGAATGCGCAAGCCAGGGATCGACTC-GGTCCCCCCTGCGTGCTGTCAATCCTACT
* ** *
15016050 GCTAGTCCTGCTGTCGCAACCCTCTG-TCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
129 ACTAGTCCTGCTACCGCAACCCT-TGATCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGC
15016114 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTG-CTCAAC
193 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGTCT-AAC
* * * * *
15016178 CGGTC-AGAGAGGCAGAATGCGCAAGCTGGGGATC-GGCCTGGTCCCTCCTTATGTGCTGTCGAT
257 CAG-CAAGAGAGACAGAATGCGCAAGCCGGGGACCAGGCC-GATCCCTCC-TATGTGCTGTCGAT
* * *
15016241 -C-CTACT-G-C-C-A-CAACCCTCGGT-CTGATCTGATCTTAGACT-AGGAATGAACTCTGTAT
319 ACGCTACTGGCCGCTACCAACCCTCGATCCAG-TCTGATCTTAGACTGA-GAATGAACTCCGTAT
15016297 GCTTAG
382 GCTTAG
* * *
15016303 ACATGGAATGAACTTCGTATGCCCAAGCCTACCCACGAAACGAGCGTGCGGGCACTCGACCGATC
1 ACATGGAATGAACTTCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCGCTCGACCGACC
* * * *
15016368 GAAGAGGTAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCCCTGCATGCTATCAATCTTACTAC
66 GGAGAGGTAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCCCTGCGTGCTGTCAATCCTACTAC
* * ** * * *
15016433 TGGTCCTGCTACCGTAACCCTTGATTTGGTTCGATCTTAGACTGGGAATGAACTCCGCATGCTTA
131 TAGTCCTGCTACCGCAACCCTTGATCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCTTA
* * *
15016498 GACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGTCTAGCCAGC
196 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGTCTAACCAGC
* * * * *
15016563 AAGAGAGACAGAATGCGTAAGCCGGGGGCCAGTCCGATCCCTCCTCTGTGCTGTCGATACTGCTG
261 AAGAGAGACAGAATGCGCAAGCCGGGGACCAGGCCGATCCCTCCTATGTGCTGTCGATAC-GCTA
15016628 CTGGTCCTGCTACTGCAACCCTCGATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTT
325 CTGG-CC-GCTAC--CAACCCTCGATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTT
15016693 AG
386 AG
* * * *
15016695 ACATGGAATGAACTCCGTATGCCTAAG-CTGACCCATGAAACGAGCGTTCAGGCGCT-GAGCCGA
1 ACATGGAATGAACTTCGTATGCCTAAGCCT-ACCCACGAAACGAGCGTGCGGGCGCTCGA-CCGA
* * ** * *
15016758 CCGGAGAGGCATAATGCATAAG-CAGGGGATCAACTCGGTCCCCCTCTGTGTGCTG
64 CCGGAGAGGTAGAATGCGCAAGCCA-GGGATCGACTCGGTCCCCC-CTGCGTGCTG
15016813 CCGGTACCAT
Statistics
Matches: 424, Mismatches: 62, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
380 16 0.04
381 247 0.58
382 8 0.02
383 4 0.01
384 1 0.00
386 1 0.00
388 1 0.00
389 1 0.00
391 6 0.01
392 129 0.30
393 10 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (387 bp):
ACATGGAATGAACTTCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCGCTCGACCGACC
GGAGAGGTAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCCCTGCGTGCTGTCAATCCTACTAC
TAGTCCTGCTACCGCAACCCTTGATCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGTCTAACCAGC
AAGAGAGACAGAATGCGCAAGCCGGGGACCAGGCCGATCCCTCCTATGTGCTGTCGATACGCTAC
TGGCCGCTACCAACCCTCGATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAG
Found at i:15016634 original size:196 final size:195
Alignment explanation
Indices: 15016266--15016741 Score: 518
Period size: 196 Copynumber: 2.4 Consensus size: 195
15016256 CTCGGTCTGA
* * *
15016266 TCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACT-TCGTATGCCCAAG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCT-GTATGCCTAAG
* * * * *
15016330 CCTACCCACGAAACGAGCGTGCGGGCACTCGACCGATCGAAGAGGTAGAATGCGCAAGCCAGGGA
65 CCAACCCATGAAACGAGCGTGCGGGCACTAGACCGAGCGAAGAGGCAGAATGCGCAAGCCAGGGA
* * * * **
15016395 TCGACTCGGTCCCCCCTGCATGCTATCAATCTTACTACTGGTCCTGCTACCGTAACCCTTGATTT
130 CCGACTCGATCCCCCCTG-ATGCTATCAATCTTACTACTGGTCCTGCTACCGCAACCCTCGATCC
*
15016460 GG
194 AG
*
15016462 T-TCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACATGGAATGAACTCTGTATGCCTAAG
1 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAG
* ** * *
15016526 CCAACCCATGAAATGAGCGTGCGGGTGTCTAG-CC-AGC-AAGAGAGACAGAATGCGTAAGCCGG
65 CCAACCCATGAAACGAGCGTGCGGG-CACTAGACCGAGCGAAGAG-G-CAGAATGCGCAAGCCAG
* * * * * * *
15016588 GGGCC-AGTCCGATCCCTCCTCTG-TGCTGTCGATAC-TGCTGCTGGTCCTGCTACTGCAACCCT
127 GGACCGACT-CGATCCC-CC-CTGATGCTATCAAT-CTTACTACTGGTCCTGCTACCGCAACCCT
15016650 CGATCCAG
188 CGATCCAG
* *
15016658 TCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
**
15016723 TGACCCATGAAACGAGCGT
66 CAACCCATGAAACGAGCGT
15016742 TCAGGCGCTG
Statistics
Matches: 236, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
194 5 0.02
195 6 0.03
196 214 0.91
197 8 0.03
198 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (195 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
CAACCCATGAAACGAGCGTGCGGGCACTAGACCGAGCGAAGAGGCAGAATGCGCAAGCCAGGGAC
CGACTCGATCCCCCCTGATGCTATCAATCTTACTACTGGTCCTGCTACCGCAACCCTCGATCCAG
Found at i:15016703 original size:26 final size:26
Alignment explanation
Indices: 15016664--15016716 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15016654 CCAGTCTGAT
15016664 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15016690 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
15016716 C
1 C
15016717 CTAAGCTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15016836 original size:381 final size:377
Alignment explanation
Indices: 15016085--15016801 Score: 858
Period size: 392 Copynumber: 1.9 Consensus size: 377
15016075 GTCCGATCCA
*
15016085 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
15016150 CCATGAAACGAGCGTGCGGGTGCTCAACCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGC
66 CCATGAAACGAGCGTGCGGGTGCTCAACCAGTCAGAGAGACAGAATGCGCAAGCCGGGGACCGGC
* * *
15016215 CTGGTCCCTCCTTATGTGCTGTCGATCCTACTGCCACAACCCTCGGTCTGATCTGATCTTAGACT
131 CTGATCCCTCCTTATGTGCTGTCGATCCTACTGCCACAACCCTCGATCAGATCTGATCTTAGACT
* *
15016280 AGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCCAAGCCTACCCACGAAACG
196 AGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCTACCCACGAAACG
* * * * *
15016345 AGCGTGCGGGCACTCGACCGATCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCC
261 AGCGTGCAGGCACTCGACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAACTCGGTCCCCC
* * *
15016410 CTGCATGCTATCAATCTTACTACTGGTCCTGCTACCGTAACCCTTGATTTGGTTCG
326 CTGCATGCTAT--AGCTTAC-ACTGGTCCTGCCACCG-AACCCTTGATTTGGCTCG
*
15016466 ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
15016531 CCATGAAATGAGCGTGCGGGTG-TCTAGCCAG-CAAGAGAGACAGAATGCGTAAGCCGGGGGCCA
66 CCATGAAACGAGCGTGCGGGTGCTC-AACCAGTC-AGAGAGACAGAATGCGCAAGCCGGGGACC-
* * *
15016594 GTCC-GATCCCTCC-TCTGTGCTGTCGATACTGCTGCTGGTCCTGCTACTGCAACCCTCGATCCA
128 GGCCTGATCCCTCCTTATGTGCTGTCGAT-C--CTACT-G--C--C-A---CAACCCTCGAT-CA
*
15016657 G-TCTGATCTTAGACT-GAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
180 GATCTGATCTTAGACTAG-GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCCA
* * * * * *
15016720 AG-CTGACCCATGAAACGAGCGTTCAGGCGCT-GAGCCGACCGGAGAGGCATAATGCATAAG-CA
244 AGCCT-ACCCACGAAACGAGCGTGCAGGCACTCGA-CCGACCGAAGAGGCAGAATGCACAAGCCA
15016782 GGGGATCAACTCGGTCCCCC
307 -GGGATCAACTCGGTCCCCC
15016802 TCTGTGTGCT
Statistics
Matches: 286, Mismatches: 30, Indels: 29
0.83 0.09 0.08
Matches are distributed among these distances:
380 16 0.06
381 121 0.42
382 3 0.01
383 4 0.01
384 1 0.00
386 1 0.00
388 1 0.00
389 1 0.00
391 7 0.02
392 129 0.45
393 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (377 bp):
ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGTGCTCAACCAGTCAGAGAGACAGAATGCGCAAGCCGGGGACCGGC
CTGATCCCTCCTTATGTGCTGTCGATCCTACTGCCACAACCCTCGATCAGATCTGATCTTAGACT
AGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCTACCCACGAAACG
AGCGTGCAGGCACTCGACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAACTCGGTCCCCC
CTGCATGCTATAGCTTACACTGGTCCTGCCACCGAACCCTTGATTTGGCTCG
Found at i:15017036 original size:26 final size:26
Alignment explanation
Indices: 15017007--15017059 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15016997 CCGGTCCCAT
15017007 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15017033 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15017059 C
1 C
15017060 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15018542 original size:171 final size:169
Alignment explanation
Indices: 15018278--15018741 Score: 479
Period size: 171 Copynumber: 2.8 Consensus size: 169
15018268 GGCTGAAGTT
* * ** * * *
15018278 TGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGCCGGCCGGAGAGG-CGTATTA
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGTAG-AATA
*
15018342 CGAAAGCCGAGGATCAACCCGGTCCCCCTCTGCGTGCTGCTGATCTCGCTGCCGGTCCTACTGCC
65 CGAAAGCCGAGGATCAGCCCGGTCCCCCTCT-CGTGCTGCTGATCTCGCTGCCGGTCCTACT-CC
*
15018407 ATAACCCTTAGTCCGGCTAGGGCTTAGACATGGAATGAACTC
128 ACAACCCTTAGTCCGGCTAGGGCTTAGACATGGAATGAACTC
* * *
15018449 TGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGTGCTCAACCGACCGGAGAGGTAGAATAC
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGTAGAATAC
* * * *
15018514 GCAAGCCGAGGATCAGCCCGGCCCCCCTCT-GTGC-GCTG---TCGAT-CC--TGCTA--CCACA
66 GAAAGCCGAGGATCAGCCCGGTCCCCCTCTCGTGCTGCTGATCTCGCTGCCGGTCCTACTCCACA
* *
15018569 ACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTC
131 ACCCTTAGTCCGGCTAGGGCTTAGACATGGAATGAACTC
* * * * * ** * *
15018608 -GTATGCCTAAGCCAACCCACAAAACGAACTTGCAAGTGCTCAGCCGATCAAAAAGGTAGAATGC
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGTAGAATAC
* * * *
15018672 GTAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTG-TCGATC-CTGCTGCTGGTCCTACTAC
66 GAAAGCCGAGGATCAGCCCGGTCCCCCTCT-CGTGCTGCT-GATCTC-GCTGCCGGTCCTACT-C
*
15018735 CGCAACC
127 CACAACC
15018742 GTTAATCTGG
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
158 79 0.33
159 41 0.17
160 4 0.02
161 2 0.01
162 4 0.02
163 1 0.00
164 4 0.02
165 5 0.02
167 4 0.02
168 4 0.02
169 4 0.02
170 7 0.03
171 80 0.33
172 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (169 bp):
TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGTAGAATAC
GAAAGCCGAGGATCAGCCCGGTCCCCCTCTCGTGCTGCTGATCTCGCTGCCGGTCCTACTCCACA
ACCCTTAGTCCGGCTAGGGCTTAGACATGGAATGAACTC
Found at i:15018685 original size:158 final size:159
Alignment explanation
Indices: 15018409--15018720 Score: 428
Period size: 158 Copynumber: 2.0 Consensus size: 159
15018399 CTACTGCCAT
*
15018409 AACCCTTAGTCCGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA
1 AACCCTTAGTCCGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAA
* * * ** *
15018474 TGAGCGTACAGGTGCTCAACCGACCGGAGAGGTAGAATACGCAAGCCGAGGATCAGCCCGGCCCC
66 CGAACGTACAAGTGCTCAACCGACCAAAAAGGTAGAATACGCAAGCCGAGGATCAGCCCGGCCCC
***
15018539 CCTCTGTGCGCTGTCGATCCTGCTACCAC
131 CCTCTACACGCTGTCGATCCTGCTACCAC
* *
15018568 AACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTC-GTATGCCTAAGCCAACCCACAAAA
1 AACCCTTAGTCCGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAA
* * * * * * * *
15018632 CGAACTTGCAAGTGCTCAGCCGATCAAAAAGGTAGAATGCGTAAGCCGGGGATCAGCCCGGTCCC
66 CGAACGTACAAGTGCTCAACCGACCAAAAAGGTAGAATACGCAAGCCGAGGATCAGCCCGGCCCC
*
15018697 CCTCTACATGCTGTCGATCCTGCT
131 CCTCTACACGCTGTCGATCCTGCT
15018721 GCTGGTCCTA
Statistics
Matches: 132, Mismatches: 21, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
158 94 0.71
159 38 0.29
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (159 bp):
AACCCTTAGTCCGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAA
CGAACGTACAAGTGCTCAACCGACCAAAAAGGTAGAATACGCAAGCCGAGGATCAGCCCGGCCCC
CCTCTACACGCTGTCGATCCTGCTACCAC
Found at i:15020031 original size:26 final size:26
Alignment explanation
Indices: 15019993--15020045 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15019983 GCCTCAAAAT
15019993 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15020019 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15020045 C
1 C
15020046 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15020523 original size:26 final size:26
Alignment explanation
Indices: 15020494--15020546 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15020484 CCAGTCCGAT
15020494 CTTAGACTAAGAATGAACTCCATATG
1 CTTAGACTAAGAATGAACTCCATATG
** * *
15020520 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCATATG
15020546 C
1 C
15020547 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCATATG
Found at i:15022514 original size:145 final size:147
Alignment explanation
Indices: 15022247--15022517 Score: 341
Period size: 145 Copynumber: 1.9 Consensus size: 147
15022237 ATGACAAGAT
* * * *
15022247 CGACAGCACGCAGGGGGGAATCGAGCCAGTCCCCGACTTGCGCATTCTGCCTCTTCGACCGGTTG
1 CGACAGCACGCAGGGGGGAATCGAGCCAGTCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTG
* * * * *
15022312 AGTGCTCGCACGGTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGATCG
66 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCG
15022377 AACCAGATTAAAGGTTA
131 AACCAGATTAAAGGTTA
* * **
15022394 CGACAGCACGCAGGGGGG-ATCGGGCCAGTCCCC-AGCTTACGCA-TCTGTCTCTCCGGTCAGCT
1 CGACAGCACGCAGGGGGGAATCGAGCCAGTCCCCGA-CTTACGCATTCTGCCTCTCCGACCAGCT
* * * * * *
15022456 GAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTCGGCATACGGAGTTTATTCCATGTCTAAG
65 GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
15022518 CATATGGGGT
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
145 65 0.62
146 21 0.20
147 18 0.17
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (147 bp):
CGACAGCACGCAGGGGGGAATCGAGCCAGTCCCCGACTTACGCATTCTGCCTCTCCGACCAGCTG
AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCG
AACCAGATTAAAGGTTA
Found at i:15022596 original size:11 final size:12
Alignment explanation
Indices: 15022567--15022598 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
15022557 GAGGGTTGCG
15022567 GTAGCAGGACCA
1 GTAGCAGGACCA
15022579 GTAGCAGGACCA
1 GTAGCAGGACCA
15022591 -TAGCAGGA
1 GTAGCAGGA
15022599 TCGATAGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.34, C:0.22, G:0.34, T:0.09
Consensus pattern (12 bp):
GTAGCAGGACCA
Found at i:15022892 original size:25 final size:26
Alignment explanation
Indices: 15022864--15022915 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15022854 GTTGACTTAG
*
15022864 GCATACGGAGTTCA-TCCCAGTATAA
1 GCATAAGGAGTTCATTCCCAGTATAA
*
15022889 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTATAA
15022915 G
1 G
15022916 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTATAA
Found at i:15024180 original size:26 final size:26
Alignment explanation
Indices: 15024141--15024193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15024131 GTTGACTTGG
15024141 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15024167 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15024193 G
1 G
15024194 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15024652 original size:158 final size:156
Alignment explanation
Indices: 15024167--15024666 Score: 504
Period size: 159 Copynumber: 3.2 Consensus size: 156
15024157 CCCAGTCTAA
* * * * * *
15024167 GCATATGGATTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGTAGTAAGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGCAGGATCGACA
* * * *
15024232 GCACGTAG-GGGGACCGGGCCTATCCCTGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCGCC
66 GCACGCAGAGGGGACC-GGCCGATCCC-GGCTTGCACATTATGCCTCTCCGATCGGCTGAGCGCC
** *
15024296 CACACGCCCGTTTCGTGGGTTGGCTTAG
129 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * *
15024324 GCATAGGGAGTTCATTCCAAGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTATGGCAGCAGGATC-GA
* * *
15024387 CAGCACGCAGAGAGGGATCGGGCTGATCCACGGCTTGCACATTATGCCTCTCCGATCGGCTCAGC
64 CAGCACGCAGAG-GGGA-CCGGCCGATCC-CGGCTTGCACATTATGCCTCTCCGATCGGCTGAGC
* * *
15024452 ACCCGTACGCTCGTTTCATGGGTTGACTTAG
126 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15024483 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGGTTATGGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGCAGGATCGACA
* * * * * * *
15024548 GCACGCAGAGGGGAGCCAGTCGATCCTCGACTTGCGCATTTTGCCTCTCCGATTGACTGAGCGCC
66 GCACGCAGAGGGGA-CCGGCCGATCC-CGGCTTGCACATTATGCCTCTCCGATCGGCTGAGCGCC
* *
15024613 CGTACACTCGTTTCGTGCGTTGGCTTAG
129 CGTACGCTCGTTTCGTGGGTTGGCTTAG
*
15024641 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
15024667 CCATACGAAG
Statistics
Matches: 275, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 54 0.20
158 87 0.32
159 125 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGCAGGATCGACA
GCACGCAGAGGGGACCGGCCGATCCCGGCTTGCACATTATGCCTCTCCGATCGGCTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15033671 original size:26 final size:26
Alignment explanation
Indices: 15033642--15033694 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15033632 GTTGGCTTAG
*
15033642 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACAGAGTTCATT-CATAGTCTAA
*
15033668 GCATATAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
15033694 G
1 G
15033695 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATAGTCTAA
Found at i:15033887 original size:195 final size:182
Alignment explanation
Indices: 15033492--15034048 Score: 598
Period size: 195 Copynumber: 3.0 Consensus size: 182
15033482 AGGCATACGA
* * ** * * ** *
15033492 AGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTG-GGACAGTAGGATCGATAGCACACA
1 AGTTCATTCATAGTCTAAGATCAGACCGGACCAAGGGTTGCGG-CAGCAGGATTGGCAGCACGCA
* ** ** *
15033556 GGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTTTCCGGCTAGCTGAGCGCCCGTACGC
65 GGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCC--TCCGGCCGGCTGAGCGCCCGCACGC
*
15033621 TCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
128 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
*
15033676 AGTTCATTCATAGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAGCAGGACTAGCAGCAGGATT
1 AGTTCATTCATAGTCTAAGATCAGACCGGACCAAGGG-T-T----GC--G----GCAGCAGGATT
* *
15033741 GGCAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCGCGGCCGGTTGAGC
54 GGCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTC-CGGCCGGCTGAGC
* * * *
15033806 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATG
118 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATA
15033870 G
182 G
* * * * *
15033871 AGTTCATTCTTAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGTAGGATTGGCAGCACGCAG
1 AGTTCATTCATAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACGCAG
* * * * * *
15033936 GGGGGACCGAGCCGATCCCTGGCTTACGCATTATACCTCTCCGGCCGGCTGAGCGCCCGCATGC-
66 GGGGGACCGGGTCGATCCCCGGCTTACGCATTCT-GC-CTCCGGCCGGCTGAGCGCCCGCACGCT
*
15034000 CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 C-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15034049 CCCAGCCAGA
Statistics
Matches: 313, Mismatches: 41, Indels: 38
0.80 0.10 0.10
Matches are distributed among these distances:
183 55 0.18
184 93 0.30
185 4 0.01
186 1 0.00
187 1 0.00
189 2 0.01
190 1 0.00
193 2 0.01
194 3 0.01
195 97 0.31
196 53 0.17
197 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (182 bp):
AGTTCATTCATAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACGCAG
GGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCCGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
Found at i:15034225 original size:159 final size:158
Alignment explanation
Indices: 15033863--15034238 Score: 400
Period size: 159 Copynumber: 2.4 Consensus size: 158
15033853 CCCAGTCTAA
* ** * * *
15033863 GCATATGGAGTTCATTCTTAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGTAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGACTGGCA
* * ** * *
15033928 GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTACGCATTATACCTCTCCGGCCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCTGACTTACACATTATACCTCTCCGGCCAACTCAGCACC
* * *
15033993 CGCATGCCTGTTTCGTGGGTTGGCTTAG
131 CGCACGCCTATTTCGTGGGTTGACTTAG
* ** ** * * *
15034021 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGTGGGACTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGTAGGACTGG
* * * * *
15034084 CAGCACGCAGAGGGGGACCGGGCCGATCCTCT-ACTTGCACATTATGCCTCTTCGGCTAACTCAG
64 CAGCACGCAG-GGGGGACCGAGCCGATCC-CTGACTTACACATTATACCTCTCCGGCCAACTCAG
* *
15034148 CACCCGTACG-CTCATTTCGTGGGTTGACTTAT
127 CACCCGCACGCCT-ATTTCGTGGGTTGACTTAG
*
15034180 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGA
15034239 TCAACAGCAT
Statistics
Matches: 173, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 60 0.35
159 107 0.62
160 5 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGACTGGCA
GCACGCAGGGGGGACCGAGCCGATCCCTGACTTACACATTATACCTCTCCGGCCAACTCAGCACC
CGCACGCCTATTTCGTGGGTTGACTTAG
Found at i:15034247 original size:159 final size:160
Alignment explanation
Indices: 15033863--15034364 Score: 520
Period size: 158 Copynumber: 3.2 Consensus size: 160
15033853 CCCAGTCTAA
* * * * *
15033863 GCATATGGAGTTCATT-CTTAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGTAGGATTGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGC
* * *
15033927 AGCACGCAG-GGGGGACCGAGCCGATCC-CTGGCTTACGCATTATACCTCTCCGGCCGGCTGAGC
65 AGCACGCAGAGGGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
*
15033990 GCCCGCATGC-CTGTTTCGTGGGTTGGCTTAG
130 GCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** ** * * *
15034021 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGTAGGATC-GG
* * * *** *
15034084 CAGCACGCAGAGGGGGACCGGGCCGATCCTCT-ACTTGCACATTATGCCTCTTCGGCTAACTCAG
64 CAGCACGCAGAGGGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAG
* * * * *
15034148 CACCCGTACGCTCATTTCGTGGGTTGACTTAT
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
15034180 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGC
* * * * * * *
15034244 AGCATGTAGA-GGGGACTGGGCCAATCCT-TGGCTTGTGCATTCTGCGTCTCCGGCCGGCTGAGC
65 AGCACGCAGAGGGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
* *
15034307 GTCCGCACGCTCGTTTCGTTGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
15034338 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15034365 CATACGGAGT
Statistics
Matches: 273, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 143 0.52
159 119 0.44
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGCA
GCACGCAGAGGGGGACCGGGCCGATCCTCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15034374 original size:26 final size:26
Alignment explanation
Indices: 15034338--15034390 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15034328 GTTGGCTTAG
15034338 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15034364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15034390 G
1 G
15034391 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15034503 original size:11 final size:11
Alignment explanation
Indices: 15034465--15034496 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
15034455 GGCACCATTG
15034465 CCGGAGCATCA
1 CCGGAGCATCA
15034476 CCGGAGCATCA
1 CCGGAGCATCA
15034487 CCGGAGCATC
1 CCGGAGCATC
15034497 GTCGGAGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.25, C:0.38, G:0.28, T:0.09
Consensus pattern (11 bp):
CCGGAGCATCA
Found at i:15035887 original size:170 final size:171
Alignment explanation
Indices: 15035645--15036114 Score: 606
Period size: 171 Copynumber: 2.8 Consensus size: 171
15035635 TAACGGCTGC
* * * * *
15035645 GGTAGTAGGACCAGCAGCAGGATCGACAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCG
1 GGTAGTAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTACG
* * * * * **
15035710 CATTCTACCTCTTCGATCGGCTGAGCACTTGCACGTTCGTTTTGTGGGTTGGCTTAGGCATAC-G
66 TATTCTACCTCTCCGGTCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
*
15035774 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGT
131 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTAT
* * * *
15035815 GGTAGCAGGACCGGCAGCAGGATCGACAGCGCACAGAGGGGGGCCGGGCTGATCCTCGGCTTACG
1 GGTAGTAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTACG
* * *
15035880 TATTCTACCTCTCCGGTCGGTTGAGCACCTGTACGCTCATTTCATGGGTTGGCTTAGGCATACAG
66 TATTCTACCTCTCCGGTCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
* *
15035945 AGTTCATTCCATGTCTAAGCCCTAGCCGGACTAAGGGTTAT
131 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTAT
* * * *
15035986 GGCAGTAGGACCGGCAGC-GAGATC-AGCAGCACGCAGAGGGGGATCGGGTTGATCCTCGGCTTT
1 GGTAGTAGGACCGGCAGCAG-GATCGA-CAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTA
* * ** *
15036049 CGTAATAC-ACCTCTCCGGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATA
64 CGT-ATTCTACCTCTCCGGTCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
15036113 CA
128 CA
15036115 AACTTCAGCC
Statistics
Matches: 258, Mismatches: 38, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
170 111 0.43
171 144 0.56
172 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (171 bp):
GGTAGTAGGACCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTACG
TATTCTACCTCTCCGGTCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
AGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTAT
Found at i:15036137 original size:26 final size:26
Alignment explanation
Indices: 15036108--15036160 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15036098 GTTGACTTAG
15036108 GCATACAAACTTCAGCCCCAGTCTAA
1 GCATACAAACTTCAGCCCCAGTCTAA
* * **
15036134 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAACTTCAGCCCCAGTCTAA
15036160 G
1 G
15036161 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAAACTTCAGCCCCAGTCTAA
Found at i:15037368 original size:26 final size:26
Alignment explanation
Indices: 15037331--15037383 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15037321 GTTGACTTAG
*
15037331 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15037357 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15037383 G
1 G
15037384 ATGGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15037704 original size:26 final size:26
Alignment explanation
Indices: 15037674--15037726 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15037664 GTCGGTTTAG
*
15037674 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
15037700 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
15037726 G
1 G
15037727 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:15038013 original size:196 final size:195
Alignment explanation
Indices: 15037649--15038468 Score: 739
Period size: 196 Copynumber: 4.2 Consensus size: 195
15037639 CAGCGCCTGA
* * * *
15037649 ACGCTCGTTTCATGGGTCGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
* ** * * *
15037714 TTCTCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGTAGCAGGACCAGCAGCAGTATCGACAGC
66 TTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGTAGCAGGACCAGCAGAAG-ATCGACAGC
* * ** * ** * *
15037779 A-CAGAGGAGGGATCG-GACTGGCCCCCGGCTTACGCATTCTGTCTCTCTGGCT-GGCT-AGACA
130 ATCAG-GG-GGGA-CGAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGATCGGTTGAG-CA
15037840 CCCGC
191 CCCGC
* * ***
15037845 ACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATGTGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
* * * * *
15037910 TTCCCAGTCTAAGATC-GAACCAAATCAAGGGTTACGGTAGCAGGACCAGTAGTAAGATTGATAG
66 TTCCCAGTCTAAGATCAG-ACCAGATCAAGGGTTGCGGTAGCAGGACCAGCAG-AAGATCGACAG
* * * * **
15037974 CATGCAGGGGGGACCGA-GTCGATCCCTGGCTTGCGCATTCTACCTCT-TCGATCGGTCGAGTGC
129 CAT-CAGGGGGGA-CGAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGATCGGTTGAGCAC
15038037 CCGC
192 CCGC
* *
15038041 ACGCTCGTTTCGTGGGTAGGCTTGGGCATAC-GAAGTTCATTCCATGTCTAAGCATACAGAGTTC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCATACAGAGTTC
* * * * *
15038105 ATTCCTAGTCTAAGATCAGATCAGACCGAGGGTT---GT----GG--CAGTAG--GATCGACAGC
65 ATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGTAGCAGGACCAGCAGAAGATCGACAG-
* * * * *
15038159 ACATAAGGAGGGACTAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCT-GATCGGTTGAGCACC
129 -CATCAGGGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGATCGGTTGAGCACC
* *
15038223 TGT
193 CGC
* *
15038226 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
** * * * * *
15038291 TTCCCAGTCTAAGATTGGATCGGA-CAGAGGGTTGCGGCAGCAGGACTAGCAGCAGGATCGACAG
66 TTCCCAGTCTAAGATCAGACCAGATCA-AGGGTTGCGGTAGCAGGACCAGCAG-AAGATCGACAG
* ** * * * *
15038355 CACGCAGGGGGGATTAGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGG-TGGGTTGAGCACC
129 CA-TCAGGGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGATCGGTTGAGCACC
*
15038419 CAC
193 CGC
* *
15038422 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGT
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
15038469 GTTAGCCCCA
Statistics
Matches: 508, Mismatches: 87, Indels: 58
0.78 0.13 0.09
Matches are distributed among these distances:
184 10 0.02
185 132 0.26
186 5 0.01
187 6 0.01
188 1 0.00
189 2 0.00
192 2 0.00
193 2 0.00
194 4 0.01
195 7 0.01
196 317 0.62
197 17 0.03
198 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (195 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGTAGCAGGACCAGCAGAAGATCGACAGCA
TCAGGGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGATCGGTTGAGCACCCGC
Found at i:15038103 original size:26 final size:26
Alignment explanation
Indices: 15038066--15038118 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15038056 GTAGGCTTGG
15038066 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
15038092 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCTAGTCTAA
15038118 G
1 G
15038119 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15038274 original size:381 final size:385
Alignment explanation
Indices: 15037649--15038468 Score: 928
Period size: 381 Copynumber: 2.1 Consensus size: 385
15037639 CAGCGCCTGA
* * * *
15037649 ACGCTCGTTTCATGGGTCGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
1 ACGCTCGTTTCGTGGGTAGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCA
* *
15037714 TTCTCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGTAGCAGGACCAGCAGCAGTATCGACAGC
66 TTCTCAGTCTAAGATCAGACTAGACCGAGGGTT--AGT---AGGA-CAGCAG-AGTATCGACAGC
* * * * * *
15037779 ACAGAGGAGGGATCGGACTGGCCCCCGGCTTACGCATTCTGTCTCTCTGGCTGGCTAGACACCCG
124 ACAAAGGAGGGATAGGACCGACCCCCAGCTTACGCATTCTGCCTCTCTGGCTGGCTAGACACCCG
**
15037844 CACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATGTGGAGTTC
189 CACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* * * * *
15037909 ATTCCCAGTCTAAGATCGAACCAAATCA-AGGGTTACGGTAGCAGGACCAGTAGTAAGATTGATA
254 ATTCCCAGTCTAAGATCGAACCAAA-CAGAGGGTTACGGCAGCAGGACCAGCAGCAAGATCGACA
* * * * **
15037973 GCATGCAGGGGGGACCGA-GTCGATCCCTGGCTTGCGCATTCTACCTCTTCGATCGGTCGAGTGC
318 GCACGCAGGGGGGA-CGAGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGATCGGTCGAGCAC
*
15038037 CCGC
382 CCAC
*
15038041 ACGCTCGTTTCGTGGGTAGGCTTGGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCA
1 ACGCTCGTTTCGTGGGTAGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCA
*
15038106 TTC-CTAGTCTAAGATCAGA-TCAGACCGAGGGTT-GT-GG-CAGTAG-G-ATCGACAGCACATA
66 TTCTC-AGTCTAAGATCAGACT-AGACCGAGGGTTAGTAGGACAGCAGAGTATCGACAGCACA-A
* * * * * *
15038164 AGGAGGGACTAGG-CCGATCCCCAGCTTGCGCATTCTGCCTCTCT-GATCGG-TTGAGCACCTGT
128 AGGAGGGA-TAGGACCGACCCCCAGCTTACGCATTCTGCCTCTCTGGCT-GGCTAGA-CACCCGC
* * *
15038226 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
190 ACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
* * * ** * * *
15038291 TTCCCAGTCTAAGATTGGATCGGACAGAGGGTTGCGGCAGCAGGACTAGCAGCAGGATCGACAGC
255 TTCCCAGTCTAAGATCGAACCAAACAGAGGGTTACGGCAGCAGGACCAGCAGCAAGATCGACAGC
** * * *
15038356 ACGCAGGGGGGATTAGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGGTGGGTTGAGCACCCA
320 ACGCAGGGGGGACGAGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGATCGGTCGAGCACCCA
15038421 C
385 C
* * *
15038422 ACGCTTGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTTATTCCATGT
1 ACGCTCGTTTCGTGGGTAGGCTTAGGCATACGA-AGTTCATTCCATGT
15038469 GTTAGCCCCA
Statistics
Matches: 365, Mismatches: 54, Indels: 29
0.81 0.12 0.06
Matches are distributed among these distances:
380 21 0.06
381 243 0.67
382 3 0.01
383 5 0.01
385 2 0.01
389 2 0.01
391 2 0.01
392 87 0.24
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (385 bp):
ACGCTCGTTTCGTGGGTAGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TTCTCAGTCTAAGATCAGACTAGACCGAGGGTTAGTAGGACAGCAGAGTATCGACAGCACAAAGG
AGGGATAGGACCGACCCCCAGCTTACGCATTCTGCCTCTCTGGCTGGCTAGACACCCGCACGCTC
ATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGAACCAAACAGAGGGTTACGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCAG
GGGGGACGAGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGATCGGTCGAGCACCCAC
Found at i:15038280 original size:26 final size:26
Alignment explanation
Indices: 15038251--15038303 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15038241 GTTGGCTTAG
15038251 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15038277 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15038303 G
1 G
15038304 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15039611 original size:26 final size:25
Alignment explanation
Indices: 15039581--15039632 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
15039571 GTTGGCTTAG
15039581 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACG-AGTTCATTCCCA-GTCTAA
*
15039607 GCATATGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
15039632 G
1 G
15039633 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:15040155 original size:26 final size:26
Alignment explanation
Indices: 15040119--15040171 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15040109 GTTGGCTTAG
15040119 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15040145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15040171 G
1 G
15040172 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15041724 original size:26 final size:26
Alignment explanation
Indices: 15041695--15041746 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15041685 GTTGACTTAT
*
15041695 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
15041721 GCATATGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15041747 CATCGAACCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15042409 original size:26 final size:26
Alignment explanation
Indices: 15042379--15042431 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15042369 GTTGACTTAG
15042379 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15042405 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15042431 G
1 G
15042432 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15042513 original size:184 final size:182
Alignment explanation
Indices: 15042038--15042590 Score: 572
Period size: 184 Copynumber: 3.0 Consensus size: 182
15042028 GTTGACTTAG
* * * * * *
15042038 GCATATGGAGTTTATTCCCAGTATAAGATCGGATCGGATCGAGGGTTGTGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
* ** * * * * * * * *
15042103 GCATGCAGGGGCCATCAGGTCGGTCCCCGGCTTGCACATTTTACCTCTTCGGCCAGCTGAACGCC
66 GCATGTAGGGGGGACCAGCT-GATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGCACC
* *
15042168 CGTACGCTCATTTCATGGGTTCGCTTAGGCATACAGAGTTCATTCCATGTC-AA
130 CGTATGCTCATTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * *
15042221 GCATACGGAGTTCATTCCCACTCTAAGATTGGATCAGATCGAAGGTTGCGGCAGCAGAATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
* * * ** * * ** *
15042286 GCACGTAAGGGGGACCGGGCCAATCCCCAGCTTGTACATTCTGCCTCTTCGATCGGTTGAGCACC
66 GCATGTAGGGGGGACC-AGCTGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGCACC
* ** *
15042351 AGTATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
130 CGTATGCTCATTTCATGGGTTG-CTTAGGCATACGGAGTTCAT-TCCATGTCTAA
15042405 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
* * * **
15042470 GCATGTAGGGGGGACCAAGCTGATCTCTGGATTGCGTATTCTGCCTCTTCGGCCGGCTGAG-AGC
66 GCATGTAGGGGGGACC-AGCTGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGCA-C
* * * *
15042534 CCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCGTATGCTCATTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
15042589 GC
1 GC
15042591 CCCAACCGGA
Statistics
Matches: 292, Mismatches: 71, Indels: 13
0.78 0.19 0.03
Matches are distributed among these distances:
182 1 0.00
183 137 0.47
184 153 0.52
185 1 0.00
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
GCATGTAGGGGGGACCAGCTGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGCACCC
GTATGCTCATTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15042767 original size:159 final size:157
Alignment explanation
Indices: 15042405--15042768 Score: 376
Period size: 159 Copynumber: 2.3 Consensus size: 157
15042395 CCCAGTCTAA
* * * * *
15042405 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAACAGGATCGGCA
* * ** * * *
15042470 GCATGTAGGGGGGACCAAGCTGATCTCTGGATTGCGTATTCTGCCTCTTCGGCCGGCTGAGAGCC
65 GAACGTAGGGGGGACCAAGCTGATCTCTGGATTGCACATTATGCCTCTTCGGCCGACTCAGAGCC
* * * *
15042535 CGCATGCCCATTTCGTGGGTTGGCTTAG
130 CGAACGCCCATTTCATGGGTTGACTTAG
* ** ** *
15042563 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAACGGGA-CTGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGACCGGACCGAGGGTTATGGCAACAGGATC-GGC
* * * *
15042627 AGAACGTAGAGGGGGACC-GGGTCGATC-CTCGGCTTGCACATTATGCCTCTTCGGCTGACTCAG
64 AGAACGTAG-GGGGGACCAAGCT-GATCTCT-GGATTGCACATTATGCCTCTTCGGCCGACTCAG
*
15042690 CA-CCCGAACGCTCATTTCATGGGTTGACTTAG
126 -AGCCCGAACGCCCATTTCATGGGTTGACTTAG
*
15042722 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTT
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTT
15042769 GCGGTAGTAG
Statistics
Matches: 166, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 58 0.35
159 102 0.61
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAACAGGATCGGCAG
AACGTAGGGGGGACCAAGCTGATCTCTGGATTGCACATTATGCCTCTTCGGCCGACTCAGAGCCC
GAACGCCCATTTCATGGGTTGACTTAG
Found at i:15042930 original size:26 final size:26
Alignment explanation
Indices: 15042880--15042932 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15042870 GTTCACTTAG
*
15042880 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15042906 GCATACGGAGTTCATTTCCA-ATCTAA
1 GCATACGGAGTTCA-TTCCATATCTAA
15042932 G
1 G
15042933 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15044275 original size:26 final size:26
Alignment explanation
Indices: 15044245--15044294 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15044235 GGCTTAGGCG
15044245 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
15044271 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15044295 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15044963 original size:26 final size:26
Alignment explanation
Indices: 15044927--15045031 Score: 158
Period size: 26 Copynumber: 4.0 Consensus size: 26
15044917 GTTGGCTTAG
15044927 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTTATTCCATGTCTAA
*
15044953 GCATATGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTTATTCCATGTCTAA
*
15044979 GCATATGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTTATTCCATGTCTAA
* *
15045005 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTTATT-CCATGTCTAA
15045031 G
1 G
15045032 ATCGAGGGTT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
26 71 0.96
27 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCATGTCTAA
Found at i:15045372 original size:26 final size:26
Alignment explanation
Indices: 15045336--15045388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15045326 TTTGACTTAG
15045336 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15045362 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15045388 G
1 G
15045389 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15045553 original size:196 final size:197
Alignment explanation
Indices: 15045313--15045672 Score: 535
Period size: 196 Copynumber: 1.8 Consensus size: 197
15045303 GTGCCTGCAC
* * *
15045313 GCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
* * *
15045378 CCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGTA-GACC-AGCAGCATGTAGGGGGGAC
66 CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGTAGGACCGA-CAGCATGCAGAGGGGAC
* * *
15045441 CGAGTTGATCCTCAACTTGTGCATTCTGGCTCTCCATCTGACCTCTTCGGCCGACTGAGCGCCCC
130 CGAGCTGATCCCCAACTTGTGCATTCTGCCTCTCCATCTGACCTCTTCGGCCGACTGAGCGCCCC
15045506 CAT
195 CAT
15045509 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
* * * * * * *
15045574 CCCAGTCTAATATTAGACCAGACTGAGGGTTGCGGTAGTAGGATCGACAGCATGCAGAGGTGACC
66 CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGTAGGACCGACAGCATGCAGAGGGGACC
* *
15045639 GGGCTGATCCCCGACTTGTGCATTCTGCCTCTCC
131 GAGCTGATCCCCAACTTGTGCATTCTGCCTCTCC
15045673 GATCGACTAA
Statistics
Matches: 144, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
196 96 0.67
197 47 0.33
198 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (197 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGTAGGACCGACAGCATGCAGAGGGGACC
GAGCTGATCCCCAACTTGTGCATTCTGCCTCTCCATCTGACCTCTTCGGCCGACTGAGCGCCCCC
AT
Found at i:15045562 original size:26 final size:26
Alignment explanation
Indices: 15045532--15045583 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15045522 GTTGACTTAG
*
15045532 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15045558 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15045584 TATTAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15046069 original size:26 final size:26
Alignment explanation
Indices: 15046032--15046084 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15046022 GTTGGTTTAG
**
15046032 GCATACGAAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15046058 GCATAC-AGAGTTGATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
15046084 G
1 G
15046085 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15048382 original size:159 final size:155
Alignment explanation
Indices: 15047911--15048457 Score: 398
Period size: 159 Copynumber: 3.4 Consensus size: 155
15047901 TAGTAGGACA
* ** *
15047911 GCAGCAGGATCGACAGCACGTAGGGGGGGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGTA-GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * ** * *
15047976 CGGTCGACTGAGCCCTGCACGCCCATTTAATGGGTTGGCTTGGGCATAGGGAGGTCATTCCATGT
65 CGGTCAACTGAGGCC-GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * *
15048041 CTAGAGCCGCAAGCGGACCCAAGGGTTGTG
129 CTA-AGCCCCAACCGGA--CGAGGGTTGCG
* * * * * * * *
15048071 GCAGCGGGA-CTGGCAGGACGCAGAGGGAGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCT
1 GCAGCAGGATC-GACAGCACGTAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT
* *** * * * * ** *
15048135 CCGACTGGTCAGCGGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGTGTTCATTCCCA-
64 CCG-GTCAACTGAGGCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAT
* ** *
15048199 GTCTCAG-ATCAGACTGGACTGAGGGTTGCG
127 GTCTAAGCCCCA-ACCGGAC-GAGGGTTGCG
* * * *
15048229 GTAGCAAGATCGACAGCACGTAGGGGTGGATCGGGCCAATCCCCGACTTGCACATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGTAGGGG-GGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * *
15048294 CGGTCAACTGAGTGCCGGCATGCCCATTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCTTG
65 CGGTCAACTGAG-GCC-GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
**
15048359 TCTAAGCCCCAACCGGATCGAGGGTTATG
128 TCTAAGCCCCAACCGGA-CGAGGGTTGCG
** * * * * * ** * * * *
15048388 GTTGTAGGACCGGCAGCACGCAGAGGGGGATTGGATCGATCCCCGGCTTGTGCATTATGCCTCTT
1 GCAGCAGGATCGACAGCACGTAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
15048453 CGGTC
65 CGGTC
15048458 GGCTTAACGC
Statistics
Matches: 292, Mismatches: 81, Indels: 29
0.73 0.20 0.07
Matches are distributed among these distances:
157 8 0.03
158 64 0.22
159 115 0.39
160 95 0.33
161 10 0.03
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.22
Consensus pattern (155 bp):
GCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
GGTCAACTGAGGCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAACCGGACGAGGGTTGCG
Found at i:15048495 original size:318 final size:318
Alignment explanation
Indices: 15047913--15048514 Score: 717
Period size: 318 Copynumber: 1.9 Consensus size: 318
15047903 GTAGGACAGC
* * * ** * *
15047913 AGCAGGATCGACAGCACGTAGGGGGGGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCG
1 AGCAAGATCGACAGCACGTAGGGGGGGATCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCG
* * *
15047978 GTCGACTGAGCCCTGCACGCCCATTTAATGGGTTGGCTTGGGCATAGGGAGGTCATTCCATGTCT
66 GTCAACTGAGCCCGGCACGCCCATTTAATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCT
* * * * * *
15048043 AGAGCCGCAAGCGGACCCAAGGGTTGTGGCAGCGGGACTGGCAGGACGCAGAGGGAGACCAGGCC
131 AGAGCCCCAACCGGACCCAAGGGTTATGGCAGCAGGACCGGCAGCACGCAGAGGGAGACCAGGCC
* * * *
15048108 GATCCCCGACTTGCGCATTATGCCTCTCCGACTGGTCAGCGGCCGCACGCTCATTTCGTGGGTTG
196 GATCCCCGACTTGCGCATTATGCCTCTCCGACTGGTCAACGCCCGCACGCTCATTTCATGGCTTG
*
15048173 ACTTAGGCATACAGTGTTCATTCCCAGTCTCAGATCAGACTGGACTGAGGGTTGCGGT
261 ACTTAGGCATACAGAGTTCATTCCCAGTCTCAGATCAGACTGGACTGAGGGTTGCGGT
*
15048231 AGCAAGATCGACAGCACGTAGGGGTGGATCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCG
1 AGCAAGATCGACAGCACGTAGGGGGGGATCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCG
* * ** * * *
15048296 GTCAACTGAGTGCCGGCATGCCCATTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCTTGTC
66 GTCAACTGAG-CCCGGCACGCCCATTTAATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTC
* * ** * * **
15048361 TA-AGCCCCAACCGGA-TCGAGGGTTATGGTTGTAGGACCGGCAGCACGCAGAGGGGGA-TTGGA
130 TAGAGCCCCAACCGGACCCAAGGGTTATGGCAGCAGGACCGGCAGCACGCAGAGGGAGACCAGG-
* * * * * * * **
15048423 TCGATCCCCGGCTTGTGCATTATGCCTCTTCG-GTCGGCTTAACGCCCTCACGCTTGTTTCATGG
194 CCGATCCCCGACTTGCGCATTATGCCTCTCCGACT-GG-TCAACGCCCGCACGCTCATTTCATGG
*
15048487 CTTGACTTAGGCATACGGAGTTCATTCC
257 CTTGACTTAGGCATACAGAGTTCATTCC
15048515 ACGTCTAAGC
Statistics
Matches: 233, Mismatches: 47, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
316 3 0.01
317 62 0.27
318 121 0.52
319 47 0.20
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (318 bp):
AGCAAGATCGACAGCACGTAGGGGGGGATCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCG
GTCAACTGAGCCCGGCACGCCCATTTAATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCT
AGAGCCCCAACCGGACCCAAGGGTTATGGCAGCAGGACCGGCAGCACGCAGAGGGAGACCAGGCC
GATCCCCGACTTGCGCATTATGCCTCTCCGACTGGTCAACGCCCGCACGCTCATTTCATGGCTTG
ACTTAGGCATACAGAGTTCATTCCCAGTCTCAGATCAGACTGGACTGAGGGTTGCGGT
Found at i:15048527 original size:26 final size:26
Alignment explanation
Indices: 15048497--15048549 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15048487 CTTGACTTAG
*
15048497 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15048523 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15048549 G
1 G
15048550 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15049285 original size:195 final size:196
Alignment explanation
Indices: 15048841--15049294 Score: 558
Period size: 195 Copynumber: 2.3 Consensus size: 196
15048831 CTCAGGTCGA
* * *
15048841 CTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
1 CTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* **
15048906 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGAGTTACCGCAGCAGGACCAGCAAC
66 ATACAGAGTTCATTCCCAGTCTAAGATCAGACTGAACCAAGAGTTACCGCAGCAGGACCAGCAAC
*** * * * * *
15048971 AGGATCGGTAGCACGTAGGGGGGACCGAGTCGATCTCTGACTTGCGCATTCTACCTCTTCGGCCG
131 AGGATCAACAGCACGCAGGAGGGACCGAGCCAATCTCTGACTTGCGCATTCTACCTCTTCGGCCA
15049036 G
196 G
* *
15049037 CTGAGCACCCTCACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
1 CTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
15049102 ATACAGAGTTCATTCCCAGTCTATA-ATCGGACTTG-ACCAAGGGTT-GCGACAGCAGGACCAGC
66 ATACAGAGTTCATTCCCAGTCTA-AGATCAGAC-TGAACCAAGAGTTACCG-CAGCAGGACCAGC
* * * * *
15049164 -ACAGGATCAACAGTACGCAGGAGGGATCGGGCCAATC-CGTGGCTTGCGCATTCTGCCTCTTCG
128 AACAGGATCAACAGCACGCAGGAGGGACCGAGCCAATCTC-TGACTTGCGCATTCTACCTCTTCG
15049227 GCCAG
192 GCCAG
* *** ** *
15049232 TTGAGCGGTCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAA
1 CTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15049295 ACCCCAGTCG
Statistics
Matches: 221, Mismatches: 33, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
194 1 0.00
195 109 0.49
196 108 0.49
197 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (196 bp):
CTGAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACTGAACCAAGAGTTACCGCAGCAGGACCAGCAAC
AGGATCAACAGCACGCAGGAGGGACCGAGCCAATCTCTGACTTGCGCATTCTACCTCTTCGGCCA
G
Found at i:15049480 original size:171 final size:168
Alignment explanation
Indices: 15049100--15049498 Score: 408
Period size: 171 Copynumber: 2.3 Consensus size: 168
15049090 CCATGTCTAA
* * * ** * *
15049100 GCATACAGAGTTCATTCCCAGTCTATAATCGGACTTGACCAAGGGTTGCGACAGCAGGACCAGCA
1 GCATACGGACTTCATTCCCAGTCTA-AATCGAACCGGACCGAGGGTTGCGGCAGCAGGACCAGCA
* *
15049165 CAGGATCAACAGTACGCAGGAGGGATCGGGCCAATCCGTGGCTTGCGCATTCTGCCTCTTCGGCC
65 CAGGATCAACAGCACGCAGGAGGGACCGGGCCAATCCGTGGCTTGCGCATTCTGCCTCTTCGGCC
* * * ** * *
15049230 AGTTGAGCGGTCGCACACTTGTTTCATGGGTTGGCTTAG
130 AGCTCAGAGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * * ** * * *
15049269 GCATACGGATTTCATT-CCATGTCTAAACCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGT
1 GCATACGGACTTCATTCCCA-GTCTAAA-TCGAACCGGACCGAGGGTTGCGGCAGCAGGACCAGC
* * * * *
15049333 AGCGGGATCGATAGCATGCAGAGAGGGACCGGGCCGATCC-TCGGCTTGCGCA-TCATGCCTCTT
64 A-CAGGATCAACAGCACGCAG-GAGGGACCGGGCCAATCCGT-GGCTTGCGCATTC-TGCCTCTT
* * *
15049396 CGGTCAGCTCAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAT
125 CGGCCAGCTCAGAGCCCGCACACTCGTTTCATGGGTTGACTTAG
*
15049440 GCATACGGACTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGA
1 GCATACGGACTTCATTCCCAGTCTAA-ATCGAACCGGACCGAGGGTTGCGGCAGCAGGA
15049499 TCAACAGCAC
Statistics
Matches: 184, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
168 5 0.03
169 44 0.24
170 17 0.09
171 114 0.62
172 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (168 bp):
GCATACGGACTTCATTCCCAGTCTAAATCGAACCGGACCGAGGGTTGCGGCAGCAGGACCAGCAC
AGGATCAACAGCACGCAGGAGGGACCGGGCCAATCCGTGGCTTGCGCATTCTGCCTCTTCGGCCA
GCTCAGAGCCCGCACACTCGTTTCATGGGTTGACTTAG
Found at i:15049627 original size:26 final size:26
Alignment explanation
Indices: 15049598--15049650 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15049588 GTTGGCTGAG
15049598 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15049624 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15049650 G
1 G
15049651 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15050858 original size:26 final size:26
Alignment explanation
Indices: 15050807--15050859 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15050797 GTTGGCTTAG
*
15050807 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
15050833 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
15050859 G
1 G
15050860 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:15051689 original size:26 final size:26
Alignment explanation
Indices: 15051638--15051690 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15051628 GTTGGCTTAG
*
15051638 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
15051664 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
15051690 G
1 G
15051691 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:15051809 original size:831 final size:831
Alignment explanation
Indices: 15050200--15051867 Score: 3246
Period size: 831 Copynumber: 2.0 Consensus size: 831
15050190 AGGACTGACA
* *
15050200 GTGGGATTAGCAGCACACAGAGGGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTGA
1 GTGGGTTTAGCAGCACACAGAGAGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTGA
15050265 TCGGCCTCTATGACCGACTGAGCGCCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
66 TCGGCCTCTATGACCGACTGAGCGCCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
15050330 TCATCCCCAGTCTAAGCATACGGAGTAAGATCGGATGGGACTGAGGGTTGCGACAGCAGGGTCCG
131 TCATCCCCAGTCTAAGCATACGGAGTAAGATCGGATGGGACTGAGGGTTGCGACAGCAGGGTCCG
*
15050395 TAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCG
196 TAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCG
15050460 CCCGTACGGCCGTTTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCT
261 CCCGTACGGCCGTTTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCT
15050525 GAACTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAAAAGGGGACCGGGCCGATCCTCGACTTG
326 GAACTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAAAAGGGGACCGGGCCGATCCTCGACTTG
* *
15050590 CGCATTATGCAGTTCGATCGGCTCAACGCCCACATGCTCATTTTGTGGGTTGACTTATGCGAACG
391 CGCATTATGCAGTTCGATCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTATGCGAACG
15050655 GAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCAGTAGGATCGATAGCACGCA
456 GAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCAGTAGGATCGATAGCACGCA
15050720 GAGGGGGATCAGGTCCATCCCTGACTTACGCATTCTACCTCTCCTACCAGCTGAACGCCCGCAAG
521 GAGGGGGATCAGGTCCATCCCTGACTTACGCATTCTACCTCTCCTACCAGCTGAACGCCCGCAAG
15050785 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
586 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
15050850 CCAGCCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTTCTGGTGCCGCATTTTT
651 CCAGCCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTTCTGGTGCCGCATTTTT
**
15050915 TTTGCCTGAGGCACCATCGTTGGAGCATTGCCGAAGCATCGTCGAAAAGCCTAACCAGCGGCATT
716 TTTAACTGAGGCACCATCGTTGGAGCATTGCCGAAGCATCGTCGAAAAGCCTAACCAGCGGCATT
15050980 GGGGGTTCCAACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
781 GGGGGTTCCAACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
15051031 GTGGGTTTAGCAGCACACAGAGAGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTGA
1 GTGGGTTTAGCAGCACACAGAGAGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTGA
15051096 TCGGCCTCTATGACCGACTGAGCGCCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
66 TCGGCCTCTATGACCGACTGAGCGCCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
15051161 TCATCCCCAGTCTAAGCATACGGAGTAAGATCGGATGGGACTGAGGGTTGCGACAGCAGGGTCCG
131 TCATCCCCAGTCTAAGCATACGGAGTAAGATCGGATGGGACTGAGGGTTGCGACAGCAGGGTCCG
15051226 TAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCG
196 TAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCG
15051291 CCCGTACGGCCGTTTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCT
261 CCCGTACGGCCGTTTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCT
15051356 GAACTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAAAAGGGGACCGGGCCGATCCTCGACTTG
326 GAACTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAAAAGGGGACCGGGCCGATCCTCGACTTG
*
15051421 CGCATTATGCAGTTCGATCGGCTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTATGCGAACG
391 CGCATTATGCAGTTCGATCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTATGCGAACG
15051486 GAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCAGTAGGATCGATAGCACGCA
456 GAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCAGTAGGATCGATAGCACGCA
*
15051551 GAGGGGGATCAGGTCCATCCCTGACTTACGCATTCTACCTCTCCTACCAGCTGAGCGCCCGCAAG
521 GAGGGGGATCAGGTCCATCCCTGACTTACGCATTCTACCTCTCCTACCAGCTGAACGCCCGCAAG
15051616 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
586 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
15051681 CCAGCCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTTCTGGTGCCGCATTTTT
651 CCAGCCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTTCTGGTGCCGCATTTTT
*
15051746 TTTAACTGAGGCACCATCGTTGGAGCATTGCCGAAGCATCGTCGAAAAGCCTAACCGGCGGCATT
716 TTTAACTGAGGCACCATCGTTGGAGCATTGCCGAAGCATCGTCGAAAAGCCTAACCAGCGGCATT
15051811 GGGGGTTCCAACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
781 GGGGGTTCCAACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
15051862 GTGGGT
1 GTGGGT
15051868 GCTGGTACTT
Statistics
Matches: 827, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
831 827 1.00
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (831 bp):
GTGGGTTTAGCAGCACACAGAGAGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTGA
TCGGCCTCTATGACCGACTGAGCGCCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATCCCCAGTCTAAGCATACGGAGTAAGATCGGATGGGACTGAGGGTTGCGACAGCAGGGTCCG
TAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCG
CCCGTACGGCCGTTTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCT
GAACTGAGGGTTGTGGCAGCGAGACCGACAGCACGTAAAAGGGGACCGGGCCGATCCTCGACTTG
CGCATTATGCAGTTCGATCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTATGCGAACG
GAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCAGTAGGATCGATAGCACGCA
GAGGGGGATCAGGTCCATCCCTGACTTACGCATTCTACCTCTCCTACCAGCTGAACGCCCGCAAG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
CCAGCCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTTCTGGTGCCGCATTTTT
TTTAACTGAGGCACCATCGTTGGAGCATTGCCGAAGCATCGTCGAAAAGCCTAACCAGCGGCATT
GGGGGTTCCAACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
Found at i:15058326 original size:26 final size:26
Alignment explanation
Indices: 15058290--15058342 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15058280 GTTGAATTAG
15058290 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
15058316 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15058342 G
1 G
15058343 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15058829 original size:26 final size:25
Alignment explanation
Indices: 15058795--15058843 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
15058785 GGCTTAGGCA
*
15058795 TATGGAGTTCATTCCATGTCTAAGCG
1 TATGAAGTTCATTCCA-GTCTAAGCG
*
15058821 TATGAAGTTCATTCTAGTCTAAG
1 TATGAAGTTCATTCCAGTCTAAG
15058844 ATCGGATCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (25 bp):
TATGAAGTTCATTCCAGTCTAAGCG
Found at i:15059027 original size:26 final size:26
Alignment explanation
Indices: 15058991--15059042 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15058981 GTTGGCTTAG
*
15058991 GCATACAGAGTTCCTT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15059017 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15059043 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15059208 original size:197 final size:197
Alignment explanation
Indices: 15058756--15059215 Score: 486
Period size: 197 Copynumber: 2.3 Consensus size: 197
15058746 TCCGGTCGGT
*** * * *
15058756 TGAGCACCCGCATGGTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCG
1 TGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCG
* * * *
15058821 TATGAAGTTCATTCTAGTCTAAGATCGGATCCCGATCGAGGGTTGCGGTAGCAGGAACCAGCAGT
65 -ATGAAGTTCATTCCAGTCTAAGATCAGATCCCGATCGAGGGTTGCGGCAGCAGGAACCAGCAGC
** * *
15058886 AGGATCGATAGCATGCAGGGGGGATTGGCTGATCCCCCGGCTTGCACTTTCTTGCCTCTCCGACG
129 AGGATCGATAGCATGCAGGGGGGACCGGCTGATCCCCCGGCTTACACATTCTTGCCTCTCCGACG
*
15058951 CGGC
194 CGAC
* * * *
15058955 TGAGCACCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCCTTCCATGTCTAAGC-
1 TGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCG
* * *
15059019 ATGCAGAGTTCATTCCCAGTCTAA-ATTAGAT-CGGATCGAGGGTTGTGGCAGCAGG-ACCAGCA
65 ATG-A-AGTTCATT-CCAGTCTAAGATCAGATCCCGATCGAGGGTTGCGGCAGCAGGAACCAGCA
* *
15059081 GCAGGATCGATAGCATGCAGGGGGGACCGAGTTGAATCCCCC-GCTTACGCATTC-TGCCATCTC
127 GCAGGATCGATAGCATGCAGGGGGGACCG-GCTG-ATCCCCCGGCTTACACATTCTTGCC-TCTC
15059144 C-A-GCCGAC
189 CGACG-CGAC
* * ** * * *
15059152 TGAGCGCTCGCACACTGGTTTCGTTGGTTGGCTAATGCATACGTAGTTCATTCCATGTCTAAGC
1 TGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGC
15059216 CCCAATCGGA
Statistics
Matches: 219, Mismatches: 33, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
196 2 0.01
197 95 0.43
198 39 0.18
199 75 0.34
200 8 0.04
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (197 bp):
TGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCGA
TGAAGTTCATTCCAGTCTAAGATCAGATCCCGATCGAGGGTTGCGGCAGCAGGAACCAGCAGCAG
GATCGATAGCATGCAGGGGGGACCGGCTGATCCCCCGGCTTACACATTCTTGCCTCTCCGACGCG
AC
Found at i:15059695 original size:159 final size:157
Alignment explanation
Indices: 15059508--15060041 Score: 492
Period size: 159 Copynumber: 3.4 Consensus size: 157
15059498 TCCGGCCGGT
* * * *
15059508 TGAGCGCCCTGCACGCCCGTTTTGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGC
1 TGAGCACCC-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15059573 CACAGGCCAGATCGAGGGTTGTGGTAGCGGGATCGAAAGCACGTC-GGGGGGACTGGGCTGATCC
65 CACAGGCCAGATCGAGGGTTGTGGTAGCGGGATCGAAAGCACG-CAGGGGGGACTGGG-TGATCC
15059637 CCAGCTTGCGCATTCTGCCTCTCTAGCTGAC
128 CC-GCTTGCGCATTCTGCCTCTCTAGCTGAC
** *
15059668 TGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG-CTTAAGC
1 TGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC-TAAGC
* * * * * * * * **
15059732 CCCA-GCCAAACCGAGGGTTATGGCAGCGGGA-CCAGTAGCACGCAGAGTGGGACCAGGTCGATC
65 CACAGGCCAGATCGAGGGTTGTGGTAGCGGGATCGA-AAGCACGCAG-GGGGGACTGGGT-GATC
* * * * * *
15059795 CCCGGCTTGTGCATTATGCCT-TTTCGATCGGC
127 CCC-GCTTGCGCATTCTGCCTCTCTAGCT-GAC
* * * * * *
15059827 TCAGCACCCGCACGCTCGTTTTGTGGGCTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-
1 TGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
* * ** * * *
15059890 -ATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAAGGGGGACTGGGTTGATCC
65 CA-CAGGCCAGATCGAGGGTTGTGGTAGCGGGATCGAAAGCACGCAGGGGGGACTGGG-TGATCC
* *
15059954 CCGACTTGCGCATTCTGCCTCTCTGGC-CAGC
128 CCG-CTTGCGCATTCTGCCTCTCTAGCTGA-C
* *
15059985 TGAGCACCCGCACGCTCGTTTTCGTAGGTTGGCTTAGGCATAACGGAGTTCATTCCA
1 TGAGCACCCGCACGCCCG-TTTCGTGGGTTGGCTTAGGCAT-ACGGAGTTCATTCCA
15060042 CACTAAGCAT
Statistics
Matches: 299, Mismatches: 58, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
157 4 0.01
158 85 0.28
159 184 0.62
160 26 0.09
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
TGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
ACAGGCCAGATCGAGGGTTGTGGTAGCGGGATCGAAAGCACGCAGGGGGGACTGGGTGATCCCCG
CTTGCGCATTCTGCCTCTCTAGCTGAC
Found at i:15061918 original size:26 final size:25
Alignment explanation
Indices: 15061879--15061930 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
15061869 GGCTCAAACT
15061879 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
15061904 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
15061930 C
1 C
15061931 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:15062249 original size:154 final size:156
Alignment explanation
Indices: 15061903--15062333 Score: 450
Period size: 153 Copynumber: 2.8 Consensus size: 156
15061893 AACTCCGTAT
* *
15061903 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
15061968 TCGA-CGAAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCT-TTGTGCTGTCGATCC
66 CCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTCGTGCTGTCGATCC
* ** *
15062031 TGCTGTGCACCCTCGGTTCGGTCTGA
131 CGCTGCACACCCTCGGTTCGGACTGA
* ** * * * * *
15062057 TCTTAGAC-TGGAATGAACTCCGTATGCAAAAGTCAACCCA-AAAATGAGCGTGC-AG-GTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
15062118 CCTACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTACGTGCTG-CGATC
66 CCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCT-CGTGCTGTCGATC
* *
15062182 CCGCTGCCACAACCCTC-G-TCTGACTGGG
130 CCGCTG-CAC-ACCCTCGGTTCGGACT-GA
* * *
15062210 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* *
15062275 CCGGCCGAAGAGAGGCAAAATGCGCAAGCCGAGGATCAACCCGGTCCCCC-CTGCGTGCT
66 CCGACCG-A-AGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCT-CGTGCT
15062334 ACCGATCCTA
Statistics
Matches: 223, Mismatches: 42, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
150 6 0.03
151 39 0.17
152 26 0.12
153 45 0.20
154 41 0.18
155 11 0.05
156 1 0.00
157 9 0.04
158 9 0.04
159 36 0.16
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTCGTGCTGTCGATCC
CGCTGCACACCCTCGGTTCGGACTGA
Found at i:15062354 original size:159 final size:155
Alignment explanation
Indices: 15061903--15062397 Score: 436
Period size: 159 Copynumber: 3.2 Consensus size: 155
15061893 AACTCCGTAT
* *
15061903 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAATGAGCGTGCGGGCGCTCAG
* * * * * ** *
15061968 TCGACGAAA-AGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCCTTTGTGCTGTCGATCC
65 CCGCCGAAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCT-CCGATCC
** *
15062031 TGCTGTGC-ACCCTCGGTTCGGTCTGA
129 TGCTCCGCAACCCTCGGTTCGGACTGA
* ** * * * * *
15062057 TCTTAGAC-TGGAATGAACTCCGTATGCAAAAGTCAACCCAAAAATGAGCGTGC-AG-GTTGAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
15062119 CTACCG-AAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTACGTGCTGCGATCC
66 C-GCCGAAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTACGTGCTCCGATCC
* * * *
15062183 CGCTGCCACAACCCTC-G-TCTGACTGGG
129 TGCT-CCGCAACCCTCGGTTCGGACT-GA
* *
15062210 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAATGAGCGTGCGGGCGCTCAG
* *
15062275 CCGGCCGAAGAGAGGCAAAATGCGCAAGCCGAGGATCAACCCGGTCCCCCCTGCGTGCTACCGAT
65 CC-GCCGAA-AGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCT-CCGAT
* * * * *
15062340 CCTACTACCGCAACCCTTTGG-TCTGTCCGA
127 CCTGCT-CCGCAACCC-TCGGTTCGGACTGA
*
15062370 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15062398 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
150 7 0.03
151 31 0.12
152 28 0.10
153 46 0.17
154 41 0.15
155 11 0.04
156 1 0.00
157 9 0.03
158 9 0.03
159 53 0.20
160 26 0.10
161 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAATGAGCGTGCGGGCGCTCAGC
CGCCGAAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTCCGATCCTG
CTCCGCAACCCTCGGTTCGGACTGA
Done.