Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 92 of 138
Found at i:15062400 original size:26 final size:25
Alignment explanation
Indices: 15062371--15062422 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15062361 TCTGTCCGAT
15062371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
* *
15062397 CTTAGACTGGGGATGAAGTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
15062422 C
1 C
15062423 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:15062829 original size:155 final size:154
Alignment explanation
Indices: 15062534--15062852 Score: 491
Period size: 155 Copynumber: 2.1 Consensus size: 154
15062524 CCGCTGCCGG
* *
15062534 TCCTACTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
1 TCCTGCTGCCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
** * * *
15062599 AACCCATGAAATGAGCGTGCGGGTGCTCAACCGACGGAGAGGTAGAATGCGTAAGCCGAGGATCA
66 AACCCACAAAACGAGCGTGCGAGTGCTCAACCGACGGAAAGGTAGAATGCGTAAGCCGAGGATCA
*
15062664 GCCCGGCCCCTCTG-TGCTGTCGA
131 GCCCGCCCCCTCTGATGCTGTCGA
15062687 TCCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 T-CCTGCTGCCACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
*
15062752 CCAACCCACAAAACGAGCGTGC-AGTGCTCAGCCGATC-GAAAGGTAGAATGCGTAAGCCGAGGA
64 CCAACCCACAAAACGAGCGTGCGAGTGCTCAACCGA-CGGAAAGGTAGAATGCGTAAGCCGAGGA
15062815 TCAGCCCGTCCCCCTCTGCATGCTGTCGA
128 TCAGCCCG-CCCCCTCTG-ATGCTGTCGA
15062844 TCCTGCTGC
1 TCCTGCTGC
15062853 TGGTCCTGTT
Statistics
Matches: 151, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
153 1 0.01
154 61 0.40
155 71 0.47
156 8 0.05
157 10 0.07
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (154 bp):
TCCTGCTGCCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCACAAAACGAGCGTGCGAGTGCTCAACCGACGGAAAGGTAGAATGCGTAAGCCGAGGATCA
GCCCGCCCCCTCTGATGCTGTCGA
Found at i:15062914 original size:26 final size:26
Alignment explanation
Indices: 15062885--15062937 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15062875 TCTGGTCGAT
*
15062885 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15062911 CTTAGCCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15062937 C
1 C
15062938 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15064112 original size:26 final size:26
Alignment explanation
Indices: 15064074--15064126 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15064064 GGCTCAAAAT
15064074 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15064100 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15064126 C
1 C
15064127 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15064569 original size:151 final size:150
Alignment explanation
Indices: 15064100--15064575 Score: 478
Period size: 147 Copynumber: 3.2 Consensus size: 150
15064090 ACTCCGTATG
* *
15064100 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGC-GGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15064164 CGGCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGTCCCCCT---TGCTGTCGATCCTGCT
66 AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGTCCCCCTGCGTGCTG-CCATCCTACT
*
15064226 G-CCAACCCTCGTCCGTCTGAT
129 GCCCAACCCTCGTCCGTCCGAT
* * * * *
15064247 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCG-TGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15064310 -AGCCGAAGAGGCATAATG-GCAAGCCGAGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGTCC-A
65 CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CC-GTCCCC-CTGCGTGCTGCCATCCTA
* * * * **
15064372 CTACCACAACCCTCAGTCTGGCTGGGG
127 CTGCC-CAACCCTC-GTCCGTC-CGAT
*
15064399 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
15064463 TGCCGGAGAGGCAGAATGCGTAAG-CGGGGATCGG-CGTCCCCCTGCGTGCTGCCAATCCTACTG
66 AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGTCCCCCTGCGTGCTGCC-ATCCTACTG
15064526 CCGCAACCCTCGGTCCAGTCCGAT
130 CC-CAACCCTC-GTCC-GTCCGAT
15064550 CTTAGAC-TGGGAATGAACT-CCTATGC
1 CTTAGACAT-GGAATGAACTCCCTATGC
15064576 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 41, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
145 16 0.06
146 21 0.08
147 53 0.20
148 6 0.02
149 17 0.06
150 30 0.11
151 49 0.18
152 48 0.18
153 25 0.09
154 4 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (150 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGTCCCCCTGCGTGCTGCCATCCTACTGC
CCAACCCTCGTCCGTCCGAT
Found at i:15064584 original size:25 final size:26
Alignment explanation
Indices: 15064550--15064601 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15064540 CCAGTCCGAT
15064550 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15064575 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15064601 C
1 C
15064602 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15064692 original size:176 final size:177
Alignment explanation
Indices: 15064398--15064947 Score: 562
Period size: 176 Copynumber: 3.0 Consensus size: 177
15064388 TCTGGCTGGG
*
15064398 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGTGCTC-A
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * *
15064461 GCTGCCGGAGAGGCAGAATGCGTAAGCGGGGATCG--GC-GTCCCCCTGCGTGCTGCCAATCCTA
66 CCAGCC-GAGAGGCAGAATGC-AAAGCGGGGATCGACCCGGTCCCCCTGCGTGCTGCCAATCCTA
*
15064523 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCTAT
129 CTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACT-GGAATGAACTCCTAT
* *
15064574 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
*
15064638 ACCGGCCG-GAGGCAGAATGC-AAGC-GGGATCGACCCGGTCCCCCTGCGTGCTGCCAATCCTGC
65 ACCAGCCGAGAGGCAGAATGCAAAGCGGGGATCGACCCGGTCCCCCTGCGTGCTGCCAA---T-C
* *
15064700 TGCTAGTCCTGCTGCCAAACCCTCGATCCGTCTGATCTTAGACTGGAATGAACT-CTAT
126 --CTA---CTGCCG-C-AACCCTCGGTCCGTCTGATCTTAGACTGGAATGAACTCCTAT
* * * *
15064758 GCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGTGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-GTGCTCA
* * * * * * ** *
15064823 GCTAGCCGAAAAGGTAGAATGCACAAAGCCGGGGATCGACCTGGTCCCCCCTGTGTGCTATCGAT
65 ACCAGCCG-AGAGGCAGAATG--CAAAG-CGGGGATCGACCCGGT-CCCCCTGCGTGCTGCCAAT
*
15064888 CCTACTGTCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTTCCGTAT
125 CCTACTG-CCGCAACCCTCGGTCCG-TCTGATCTTAGACT-GGAATGAAC-TCC-TAT
15064946 GC
1 GC
15064948 CTAAGTCAAC
Statistics
Matches: 313, Mismatches: 28, Indels: 54
0.79 0.07 0.14
Matches are distributed among these distances:
173 7 0.02
174 4 0.01
175 2 0.01
176 75 0.24
177 15 0.05
178 5 0.02
179 1 0.00
180 1 0.00
182 3 0.01
183 12 0.04
184 72 0.23
185 37 0.12
186 16 0.05
187 24 0.08
188 5 0.02
189 2 0.01
190 4 0.01
191 1 0.00
192 13 0.04
193 14 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (177 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CCAGCCGAGAGGCAGAATGCAAAGCGGGGATCGACCCGGTCCCCCTGCGTGCTGCCAATCCTACT
GCCGCAACCCTCGGTCCGTCTGATCTTAGACTGGAATGAACTCCTAT
Found at i:15064920 original size:184 final size:178
Alignment explanation
Indices: 15064398--15064947 Score: 548
Period size: 184 Copynumber: 3.0 Consensus size: 178
15064388 TCTGGCTGGG
*
15064398 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * ** *
15064462 CTGCCGGAGAGGCAGAATGCGTAAGCGGGGATCG-GC-GTCCCCCTGCGTGCTGCCAATCCTACT
66 CTGCC-GAGAGGCAGAATGC-CAAGCGGGGATCGACCGGTCCCCCTGTGTGCTATCGATCCTACT
* * *
15064525 G-CCGCAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCTAT
129 GTCCCCAACCCTCGGTCCGA-TCTGATCTTAGACTAGGAATGAACTCCTAT
* *
15064574 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-
* * * *
15064638 ACCGGCCG-GAGGCAGAATG-CAAGC-GGGATCGACCCGGTCCCCCTGCGTGCTGCCAATCCTGC
64 AGCTGCCGAGAGGCAGAATGCCAAGCGGGGATCGA-CCGGTCCCCCT--GTG-TG-CTAT-C-GA
* * * *
15064700 TGCTAGTCCTGCTGCCAAACCCTCGATCCG-TCTGATCTTAGACT-GGAATGAACT-CTAT
122 TCCTA---CTG-TCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCTAT
* * * *
15064758 GCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGTGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-GTGCTCA
* *
15064823 GCTAGCCGAAAAGGTAGAATGCACAAAGCCGGGGATCGACCTGGTCCCCCCTGTGTGCTATCGAT
65 GCT-GCCG-AGAGGCAGAATGC-C-AAG-CGGGGATCGACC-GGT-CCCCCTGTGTGCTATCGAT
15064888 CCTACTGTCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTTCCGTAT
123 CCTACTGTCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAAC-TCC-TAT
15064946 GC
1 GC
15064948 CTAAGTCAAC
Statistics
Matches: 304, Mismatches: 35, Indels: 58
0.77 0.09 0.15
Matches are distributed among these distances:
173 7 0.02
174 4 0.01
175 2 0.01
176 62 0.20
177 15 0.05
178 7 0.02
179 2 0.01
180 1 0.00
181 1 0.00
182 4 0.01
183 15 0.05
184 73 0.24
185 32 0.11
186 14 0.05
187 27 0.09
188 6 0.02
189 4 0.01
190 5 0.02
191 6 0.02
192 11 0.04
193 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (178 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CTGCCGAGAGGCAGAATGCCAAGCGGGGATCGACCGGTCCCCCTGTGTGCTATCGATCCTACTGT
CCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCTAT
Found at i:15070943 original size:26 final size:26
Alignment explanation
Indices: 15070914--15070964 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15070904 CCGATCTGAT
*
15070914 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
15070940 CTTAGACTGGAGATGAACTCCGTAT
1 CTTAGACTGGAGATGAACTCCGTAT
15070965 AACTAGGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:15072167 original size:26 final size:26
Alignment explanation
Indices: 15072137--15072189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15072127 CTAGTCTGAT
15072137 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
15072163 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
15072189 C
1 C
15072190 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15072360 original size:26 final size:26
Alignment explanation
Indices: 15072331--15072383 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15072321 CCGATCTGAT
15072331 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15072357 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15072383 C
1 C
15072384 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15073597 original size:26 final size:26
Alignment explanation
Indices: 15073555--15073607 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15073545 GGCTCAAACT
*
15073555 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15073581 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15073607 C
1 C
15073608 GTAAGCCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15073926 original size:26 final size:26
Alignment explanation
Indices: 15073890--15073942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15073880 CCGGTTTGAT
*
15073890 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15073916 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15073942 C
1 C
15073943 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15074118 original size:13 final size:13
Alignment explanation
Indices: 15074100--15074124 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15074090 TGCTGCCGTT
15074100 GATCGGAGAGGCC
1 GATCGGAGAGGCC
15074113 GATCGGAGAGGC
1 GATCGGAGAGGC
15074125 AGAATGCGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.48, T:0.08
Consensus pattern (13 bp):
GATCGGAGAGGCC
Found at i:15074804 original size:159 final size:159
Alignment explanation
Indices: 15074548--15074917 Score: 410
Period size: 159 Copynumber: 2.3 Consensus size: 159
15074538 AGCCCATATG
* * * *
15074548 CTTAGACTGGGGATAAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCTGGCTCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCTGGCTCTCAGC
* * * *
15074613 CAATCGGAGAGGCAGAATGAAGAAGCTGGGGACTGGCCCAGTCCCCCCCTACGTGCCGTCGATCC
66 CAATCGAAAAGGCAGAATGAAGAACCTGGGGACCGGCCCAGTCCCCCCCTACGTGCCGTCGATCC
* *** * *
15074678 TACTG-CTGCAACCCT-TGGTCTGGTCTGAT
131 TACTGAC-ACAACCCTCAATTC-GATCCGAT
15074707 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GAGCAT-TCA
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCTG-GC-TCTCA
* * * * * * * ** *
15074770 GTCGATCGAAAAGGCAGAAT-ACGCAAACCT-GGGACCGGCCCGGTGCCCTCTTGGGTGCTGTCG
64 GCCAATCGAAAAGGCAGAATGAAG--AACCTGGGGACCGGCCCAGTCCCCCCCTACGTGCCGTCG
15074833 ATCCTACTGACACAACCCTCAATTCGATCCGAT
127 ATCCTACTGACACAACCCTCAATTCGATCCGAT
* *
15074866 CTTAGACTGGCAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGT
15074918 TCGGGTACTG
Statistics
Matches: 179, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
158 3 0.02
159 168 0.94
160 8 0.04
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCTGGCTCTCAGC
CAATCGAAAAGGCAGAATGAAGAACCTGGGGACCGGCCCAGTCCCCCCCTACGTGCCGTCGATCC
TACTGACACAACCCTCAATTCGATCCGAT
Found at i:15075957 original size:25 final size:26
Alignment explanation
Indices: 15075907--15075958 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15075897 CGGGTCCAAT
*
15075907 CTTAGATTGGGAATGAACTCCATATG
1 CTTAAATTGGGAATGAACTCCATATG
*
15075933 CTTAAATTGGG-ATGAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCATATG
15075958 C
1 C
15075959 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAAATTGGGAATGAACTCCATATG
Found at i:15076634 original size:26 final size:26
Alignment explanation
Indices: 15076592--15076644 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15076582 CTAGTTTGAT
*
15076592 CTTAGACTGGAATTGAATTCCATATG
1 CTTAGACTGGAATTGAACTCCATATG
* *
15076618 CTTAGACTGGGGA-TGAACTCCGTATG
1 CTTAGACT-GGAATTGAACTCCATATG
15076644 C
1 C
15076645 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAATTGAACTCCATATG
Found at i:15077387 original size:26 final size:26
Alignment explanation
Indices: 15077348--15077400 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15077338 GTTGGCTTAG
* *
15077348 GCATATGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15077374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15077400 G
1 G
15077401 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15079077 original size:159 final size:159
Alignment explanation
Indices: 15078779--15079173 Score: 485
Period size: 159 Copynumber: 2.5 Consensus size: 159
15078769 GGCTCAAACT
* * * *
15078779 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCT-ATCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGTGCTCAA
* * * ** * * * *
15078843 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCACGGTCCCTCTCTGCTTACTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCACAATCCCTCCCTACGTACTGTCGATC
* * * *
15078908 CTGCTGCCACAACCCTCGGT-CTGATTTGGG
130 CTGCTACCACAACCCTCGGTCCAG-TCTGAG
15078938 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * *
15079002 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGACCAGCCCAATCCC-CCCATACGTGCTGTCGAT
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCACAATCCCTCCC-TACGTACTGTCGAT
* *
15079066 CTTGCTACCACAACCCTCGGTCCAGTCTGAT
129 CCTGCTACCACAACCCTCGGTCCAGTCTGAG
* *
15079097 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT-AAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA-
15079161 CCGGCCGGAGAGG
65 CCGGCCGGAGAGG
15079174 TTGGATGGCA
Statistics
Matches: 204, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
158 8 0.04
159 193 0.95
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
CGGCCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCACAATCCCTCCCTACGTACTGTCGATCC
TGCTACCACAACCCTCGGTCCAGTCTGAG
Found at i:15080566 original size:158 final size:155
Alignment explanation
Indices: 15080311--15080810 Score: 475
Period size: 159 Copynumber: 3.2 Consensus size: 155
15080301 CTTCGTATGG
* * * * * *
15080311 TTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACGCACGAAACGAGTGTACGGGCGTTCAGT
1 TTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * *
15080375 CAATCGGAGAGGCAAAATGCGCAAGTCGAGGATCGACTGGCTCCCCTCTGCGTGCTGTCGATCCT
65 CAATCGGAGAGGCAAAATGTGCAAGCCG-GGATCGACCGG-TCCCCTCTGCGTGCTGTCGATCCT
* *
15080440 GCTGCCATAACCCTTGGTCTGATCCAATC
128 GCTGCCATAACCCTCGGTC-GATCCGATC
* * * *
15080469 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTGAGCC
1 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC
* * * * *
15080534 GATCGGAGAGGCATAATGTGCAAGCCGTGGATCAGCCCGATCCCTCTCTGCGTGCTG-CCAGTCC
66 AATCGGAGAGGCAAAATGTGCAAGCCG-GGATC-GACCGGTCCC-CTCTGCGTGCTGTCGA-TCC
* * * * * **
15080598 CGCTGCCACAACCCTCGGTCCAGCTGGGGC
127 TGCTGCCATAACCCTCGGTCGATC-CGATC
* * * **
15080628 TTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC
* * * * * * * *
15080693 AACCGGAGAGGCAGAATGTGTAAGCCAGGGATAGGCCCGGTCCCC-CTACGTGCTGTCGATCTTA
66 AATCGGAGAGGCAAAATGTGCAAGCC-GGGAT-CGACCGGTCCCCTCTGCGTGCTGTCGATCCTG
* * *
15080757 CTACCGTAACCCTCGATCCGATCCGATC
129 CTGCCATAACCCTCGGT-CGATCCGATC
*
15080785 TTAGACTGGGAATGAAATCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
15080811 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 59, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 50 0.18
158 95 0.35
159 128 0.47
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (155 bp):
TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC
AATCGGAGAGGCAAAATGTGCAAGCCGGGATCGACCGGTCCCCTCTGCGTGCTGTCGATCCTGCT
GCCATAACCCTCGGTCGATCCGATC
Found at i:15080813 original size:26 final size:26
Alignment explanation
Indices: 15080784--15080836 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15080774 CCGATCCGAT
15080784 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* * *
15080810 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
15080836 C
1 C
15080837 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:15081842 original size:158 final size:158
Alignment explanation
Indices: 15081544--15082033 Score: 384
Period size: 158 Copynumber: 3.1 Consensus size: 158
15081534 TTAGACATGT
* * * ** * * *
15081544 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACTGGAGGG
1 AATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGACTGAAGAG
* * * * * * * * * *** *
15081609 GTAGAATACGCAAGTCGAGGATCAGCCTAGTCCCCCCTGCATGCTGTCGATCTTGCT-CCTGCAA
66 GCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTACGTGCTGTAGATCCCACTGCC-ACAA
**
15081673 CCCTCCATCTGGTCCGATCTTAGACTAGG
130 CCCTCGGTCTGGTCCGATCTTAGACTAGG
* * * *
15081702 AATGAACTCCGTATGCATAAGTCAACCCACGAAA-GGAGCGTGCGGGCGCTGAGCCGAC-GAAGA
1 AATGAACTCCCTATGCATAAGCCAACCCACGAAATGG-GCGTGCGGGCGCTCAACCGACTGAAGA
* * * *
15081765 GGCATAATGTC-CAAGCCGGGGATC-GGCCAGGTCCCTCTCTACGTGCTGCTAG-TCCCGCTGCC
65 GGCAAAATG-CGCAAGCCGGGGATCAGCCCA-GTCCC-CCCTACGTGCTG-TAGATCCCACTGCC
* * **
15081827 ACAACCCTTGGTCTGG-CTGGGGCTTAGAC-ATGG
126 ACAACCCTCGGTCTGGTC-CGATCTTAGACTA-GG
* * * * * *
15081860 AATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGTGCTCAACCGGCTGCAGAG
1 AATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGACTGAAGAG
* * * * * * * *
15081925 GCAAAATGCGCATGCTGGGGATCAGCCCAGTCCCCCCTACGTGTTGTCGATTCTACTGTCGCAAC
66 GCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTACGTGCTGTAGATCCCACTGCCACAAC
* *
15081990 CCTCGGTCTGGTCCAATCTTAGACTGGG
131 CCTCGGTCTGGTCCGATCTTAGACTAGG
*
15082018 AATGAACTCCTTATGC
1 AATGAACTCCCTATGC
15082034 TTATACTGGG
Statistics
Matches: 261, Mismatches: 56, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 30 0.11
158 189 0.72
159 35 0.13
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
AATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGACTGAAGAG
GCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTACGTGCTGTAGATCCCACTGCCACAAC
CCTCGGTCTGGTCCGATCTTAGACTAGG
Found at i:15082057 original size:25 final size:26
Alignment explanation
Indices: 15082007--15082058 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15081997 CTGGTCCAAT
*
15082007 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15082033 CTTATACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15082058 C
1 C
15082059 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15082338 original size:12 final size:12
Alignment explanation
Indices: 15082321--15082359 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15082311 CCCTCCTACG
*
15082321 TGCTATCGATCC
1 TGCTATCGGTCC
*
15082333 TGCTATTGGTCC
1 TGCTATCGGTCC
*
15082345 TGCTACCGGTCC
1 TGCTATCGGTCC
15082357 TGC
1 TGC
15082360 GACCGCAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.10, C:0.33, G:0.23, T:0.33
Consensus pattern (12 bp):
TGCTATCGGTCC
Found at i:15082924 original size:26 final size:26
Alignment explanation
Indices: 15082886--15082938 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15082876 CCGATCCGAT
*
15082886 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
15082912 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTTCATATG
15082938 C
1 C
15082939 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:15083265 original size:26 final size:26
Alignment explanation
Indices: 15083229--15083280 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15083219 CCGATCCGAT
*
15083229 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15083255 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15083281 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15083417 original size:343 final size:342
Alignment explanation
Indices: 15082864--15083730 Score: 909
Period size: 343 Copynumber: 2.5 Consensus size: 342
15082854 TCCTGCTGCT
15082864 GCAACCCTC-AGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGA
1 GCAACCCTCGA-TCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGA
* * * * * * * *
15082928 ACTTCATATGCCTAAGCTAACCCACAAAACGAGCGTGCGAGCACACAGCTG-GCCGCAGAGGTAG
65 ACTCCGTATGCCTAAGC-AACCCACAAAACGAGCGTGAGA-CACTCAGCCGATCAG-AGAGGCAG
* * * * * * * * * *
15082992 AATGCGCAAGTCGAGGATCAACCCGGCCCCCCTCTGTGTGCTGTCGGTTCCGCTGCCACAACCCT
127 AATGCGCAAGTTGGGGATCAGCCCGG-TCCCCACTGTGTGCTGCCAGTCCCACTACCACAACCCT
* ** *
15083057 CGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-AAAACGGGC
191 AGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAC-GGC
* * * * * *
15083121 GTGCGGGCGATCAGTCGGTCGGAGAGGCAAAATGAGCATGTCGGGGATCAGTCTAATCCCCCCTG
255 GTACGGGCGATCAGTCGATCGAAGAGGCAAAATGAGCAAGTCGGGGATCAGCCCAATCCCCCCTG
*
15083186 CATGCTGTCGATCCTA-C-TACC
320 CATGCTATCGATCCTACCTTACC
*
15083207 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGA
1 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAT-GGAATGA
* * * *
15083271 ACTCCGTATGTCTAAGTCAACCCACAAAACGAGCGTGTGACTGCTCAGCCGATCAGAGAGGCATA
65 ACTCCGTATGCCTAAG-CAACCCACAAAACGAGCGTGAGAC-ACTCAGCCGATCAGAGAGGCAGA
** * * *
15083336 ATGCAAAAGTTGGGGATCAGCCCGATCCACCACTGCGTGCTGCCAGTCCCACTACCATAACCCTA
128 ATGCGCAAGTTGGGGATCAGCCCGGTCC-CCACTGTGTGCTGCCAGTCCCACTACCACAACCCTA
* * * *
15083401 GGTCCGACTAGGGCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATCGGCGT
192 GATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAACGGCGT
* * * * * * ** *
15083466 ACGGGTGCTCAGTCGATCGAAGAGGCAAAATGCGTAAGTCTGGGATCGGCCCGGTCCCCCCTGCG
257 ACGGGCGATCAGTCGATCGAAGAGGCAAAATGAGCAAGTCGGGGATCAGCCCAATCCCCCCTGCA
*
15083531 TGCTATCGATCCTACTGCTGTCCTGTTGCC
322 TGCTATCGATCCTA-------CC--TTACC
* * * * *
15083561 GCAACCCTCGGTTCGAACCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAA
1 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAA
* * * * * *
15083626 CTCCGTATACCTAAGCCAACCCACGAAACGAACGTGCAGGCACTCAACCGATCGGAGAGGCAGAA
66 CTCCGTATGCCTAAG-CAACCCACAAAACGAGCGTG-AGACACTCAGCCGATCAGAGAGGCAGAA
**
15083691 TGCGCAACCTGGGGATCAGCCCGGTCCCCACTGTGTGCTG
129 TGCGCAAGTTGGGGATCAGCCCGGTCCCCACTGTGTGCTG
15083731 TCGATCCTGC
Statistics
Matches: 429, Mismatches: 75, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
342 4 0.01
343 268 0.62
344 8 0.02
351 1 0.00
353 12 0.03
354 133 0.31
355 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (342 bp):
GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAA
CTCCGTATGCCTAAGCAACCCACAAAACGAGCGTGAGACACTCAGCCGATCAGAGAGGCAGAATG
CGCAAGTTGGGGATCAGCCCGGTCCCCACTGTGTGCTGCCAGTCCCACTACCACAACCCTAGATC
CGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAACGGCGTACGG
GCGATCAGTCGATCGAAGAGGCAAAATGAGCAAGTCGGGGATCAGCCCAATCCCCCCTGCATGCT
ATCGATCCTACCTTACC
Found at i:15084113 original size:26 final size:26
Alignment explanation
Indices: 15084084--15084136 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15084074 CCGATCTGAT
15084084 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15084110 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15084136 C
1 C
15084137 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15085949 original size:158 final size:159
Alignment explanation
Indices: 15085288--15085949 Score: 595
Period size: 159 Copynumber: 4.2 Consensus size: 159
15085278 AACTCTGTAT
* * * * *
15085288 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCTACGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
15085353 TCGCTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGTGTGCTGTCTATC
66 TCGC-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
** *
15085418 CTGCTACTGCAACCCTCAGTCCGATCT-GA
130 CTGCTACCACAACCCTCAATCCGATCTAGA
** * * *
15085447 TG-TTAGAC-TCAAAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTG
1 -GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * * * * * *
15085510 AGCTGGCCGAAGAGGCATAATGCGCATGCCGGGGATCGACCTGTTCCCCCACTGCGTGTTGTCGG
64 AG-TCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGA
* * * ** * *
15085575 CCCCGCTGCCACAACCCTCGGTCCG-GCTAGG
128 TCCTGCTACCACAACCCTCAATCCGATCTAGA
* ** * * *
15085606 GCTTAGACATGGAATGAACTCCCTATGCCTAATTCAACCCACAAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
15085671 TCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGT-CCCCCTTACGTGCTGCCGATC
66 TCG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
* * * *
15085735 CAGCTACCACAACCCTCGATCCGA-CTGGG
130 CTGCTACCACAACCCTCAATCCGATCTAGA
* * * * * ** *
15085764 GCTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * **
15085829 TTAGCCGGAGAGGCAGAATGCACAACCCGGGGATCGGCTCGGT-CCCCTTTGCGTGCTGTCGATC
66 -TCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
* * *
15085893 CTGCTGCCGCAACCCTCAATCTGATCT-GA
130 CTGCTACCACAACCCTCAATCCGATCTAGA
* *
15085922 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15085950 TTAGATTGGG
Statistics
Matches: 404, Mismatches: 88, Indels: 22
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 192 0.48
159 206 0.51
160 5 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCAATCCGATCTAGA
Found at i:15085974 original size:26 final size:26
Alignment explanation
Indices: 15085923--15085975 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15085913 CTGATCTGAT
*
15085923 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
15085949 CTTAGATTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
15085975 C
1 C
15085976 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:15086306 original size:26 final size:26
Alignment explanation
Indices: 15086275--15086326 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15086265 CTGGTATGAT
** *
15086275 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
*
15086301 CTTAGACACTGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
15086327 TGTAAGCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:15086811 original size:26 final size:26
Alignment explanation
Indices: 15086775--15086827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15086765 CCGGTCCGAT
*
15086775 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
15086801 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
15086827 C
1 C
15086828 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:15093431 original size:26 final size:26
Alignment explanation
Indices: 15093393--15093445 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15093383 GGCTCAAACT
15093393 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15093419 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15093445 C
1 C
15093446 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15094497 original size:26 final size:26
Alignment explanation
Indices: 15094446--15094498 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15094436 CTGGTTTGAT
**
15094446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAATATG
15094472 CTTAGACTGGTG-ATGAACTCAATATG
1 CTTAGACTGG-GAATGAACTCAATATG
15094498 C
1 C
15094499 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:15094799 original size:171 final size:171
Alignment explanation
Indices: 15094484--15094799 Score: 375
Period size: 171 Copynumber: 1.8 Consensus size: 171
15094474 TAGACTGGTG
* *
15094484 ATGAACTCAATATGCCTAAGTCAACCCATGAAACGAGCGTAGGGGCACTCAGCCGACCGAAGAAG
1 ATGAACTCAATATGCCTAAGCCAACCCACGAAACGAGCGTAGGGGCACTCAGCCGACCGAAGAAG
* * *
15094549 CATAATACGCAAGTCAGGGATCAACCCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCCGGTCC
66 CAGAATACGCAAGCCAGGGATCAACCCGGTCCCCCTCTGTATGCTACCGATCCCGCTGCCGGTCC
*
15094614 TGCTGCCACAACCCTTGGTCCAACTGGGACTTAGACATGGA
131 TACTGCCACAACCCTTGGTCCAACTGGGACTTAGACATGGA
** * * *
15094655 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-GCGGGCGCTCAGCCGA-CGGAGAG
1 ATGAACTCAATATGCCTAAGCCAACCCACGAAACGAGCGTAG-GGGCACTCAGCCGACCGAAGAA
** *** * * *** * *
15094718 GCAGAATGTGCAAGCCAGGGATTGGCCTGGTCCCCCCTCTGTATGTTGTTGATCCTGCTGCTGGT
65 GCAGAATACGCAAGCCAGGGATCAACCCGGT-CCCCCTCTGTATGCTACCGATCCCGCTGCCGGT
* *
15094783 CCTACTTCCGCAACCCT
129 CCTACTGCCACAACCCT
15094800 CAGTTCGGTC
Statistics
Matches: 118, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
170 29 0.25
171 89 0.75
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (171 bp):
ATGAACTCAATATGCCTAAGCCAACCCACGAAACGAGCGTAGGGGCACTCAGCCGACCGAAGAAG
CAGAATACGCAAGCCAGGGATCAACCCGGTCCCCCTCTGTATGCTACCGATCCCGCTGCCGGTCC
TACTGCCACAACCCTTGGTCCAACTGGGACTTAGACATGGA
Found at i:15095345 original size:26 final size:26
Alignment explanation
Indices: 15095316--15095368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15095306 CTAGTCCGAT
*
15095316 CTTAGATTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
15095342 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
15095368 C
1 C
15095369 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:15096538 original size:26 final size:26
Alignment explanation
Indices: 15096509--15096561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15096499 CCGATCCGAT
15096509 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15096535 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15096561 C
1 C
15096562 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15097069 original size:26 final size:26
Alignment explanation
Indices: 15097033--15097085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15097023 ATGGTCCAAT
*
15097033 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
15097059 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15097085 C
1 C
15097086 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15097364 original size:25 final size:25
Alignment explanation
Indices: 15097328--15097376 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
15097318 GCTCAAACTG
15097328 TTAGACTAGGAATGAACTCTGTATC
1 TTAGACTAGGAATGAACTCTGTATC
15097353 TTAGAC-ATGGAATGAACTCTGTAT
1 TTAGACTA-GGAATGAACTCTGTAT
15097377 GCCAAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (25 bp):
TTAGACTAGGAATGAACTCTGTATC
Found at i:15097916 original size:26 final size:26
Alignment explanation
Indices: 15097878--15097930 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15097868 CCGGTCTGAT
*
15097878 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15097904 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15097930 C
1 C
15097931 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15098384 original size:159 final size:155
Alignment explanation
Indices: 15097904--15098407 Score: 397
Period size: 159 Copynumber: 3.2 Consensus size: 155
15097894 ACTTCGTATG
* * * *
15097904 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTCAG-
* * * * ** * * *
15097969 CAGTCGGAGAGGTAGAATGCGTAAGCCGAAGACCGGTCTGGTCCCCCCTGCGTGCTGTTGATCCT
65 CAGTCAGAGAGGTAGAATGAGCAAGCTGGGGATCGCTC-GGTCCCCCCTGCGTGCTG-CGATCCT
*** * * *
15098034 GCTATTGCAACGCTCGATCCGATCCGAT
128 GCTACCACAACCCTCGGTCCGATCTGAT
* ** * * * *
15098062 CTTAGA-TTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGTGTTCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTCAG
* * * * * * * * *
15098126 CTGACTGAAAAGGCATAATGTGCAAG-TCGGGGATCAGC-CTGGTCCCCCTCTACGTGCTGCTAG
65 CAGTCAG-AGAGGTAGAATGAGCAAGCT-GGGGATC-GCTC-GGTCCCCC-CTGCGTGCTGCGA-
* * **
15098189 TCCCGCTGCCACAACCCTCGGTCCGA-CTGGGG
124 TCCTGCTACCACAACCCTCGGTCCGATCT-GAT
* * * * *
15098221 CTTAGACATGTAATGAACTCCCTATGCATAAGCCAACCCATGAAACGGGCGTACGAGCACTCTGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTCAG-
*
15098286 CGGTCAGAGAGGTAGAATGAGCAAGCTGGGGATCGACTCGGTCCCCCCTGCGTGCTGCCGATCCT
65 CAGTCAGAGAGGTAGAATGAGCAAGCTGGGGATCG-CTCGGTCCCCCCTGCGTGCTG-CGATCCT
*
15098351 GCTACCACATCCCTCGGGTCCGATCTGAT
128 GCTACCACAACCCTC-GGTCCGATCTGAT
15098380 CTTAGAC-TCGGGAATGAACTCCGATATG
1 CTTAGACAT--GGAATGAACTCCG-TATG
15098408 GTTAGACTGG
Statistics
Matches: 264, Mismatches: 64, Indels: 33
0.73 0.18 0.09
Matches are distributed among these distances:
157 5 0.02
158 108 0.41
159 127 0.48
160 20 0.08
161 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTCAGC
AGTCAGAGAGGTAGAATGAGCAAGCTGGGGATCGCTCGGTCCCCCCTGCGTGCTGCGATCCTGCT
ACCACAACCCTCGGTCCGATCTGAT
Found at i:15098414 original size:28 final size:26
Alignment explanation
Indices: 15098381--15098433 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
15098371 CGATCTGATC
15098381 TTAGACTCGGGAATGAACTCCGATATGG
1 TTAGACT-GGGAATGAACTCCG-TATGG
* *
15098409 TTAGACTGGGGATTAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15098434 CCTACTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 12 0.52
28 7 0.30
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:15098807 original size:27 final size:26
Alignment explanation
Indices: 15098777--15098830 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
15098767 CCGATCTAAT
15098777 CTTAGAC-TAGGAATGAACTCCGTTATG
1 CTTAGACAT-GGAATGAACTCCG-TATG
*
15098804 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15098830 C
1 C
15098831 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 5 0.20
27 19 0.76
28 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15099211 original size:159 final size:158
Alignment explanation
Indices: 15098803--15099219 Score: 348
Period size: 159 Copynumber: 2.6 Consensus size: 158
15098793 ACTCCGTTAT
* * * * * *
15098803 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGAGTGCTC-
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGC-AG-GCACT
* * * ** * * * * * *
15098866 CA-CCAGTCGGAGAGCCAGAATGC-ACAAACAGGGACCGACCCAATCCC-CCCTGTGTGCTGTC-
63 CAGCCAGTCGGAGAGGCATAACGCGA-AGCCAGGGATCGGCCCGATCCCTCTCTGGGTGCTGCCA
* *
15098927 GATCCTGCTATCACAACCCTCAGTCCGGTCCGA
127 G-TCCCGCTACCACAACCCTCAGTCCGGTCCGA
* * * ** * *
15098960 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCATGCAGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
15099025 CCAGTCGGAGAGGCATAACGCGTAAGCC-GAGGATCGGCCCGATCCCTCTCTGGGTGCTGCCAGT
66 CCAGTCGGAGAGGCATAACGCG-AAGCCAG-GGATCGGCCCGATCCCTCTCTGGGTGCTGCCAGT
* * *
15099089 CCCGCTACCACAACCTTCAGTCCGGTCGGG
129 CCCGCTACCACAACCCTCAGTCCGGTCCGA
* * * *
15099119 GCTTCGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCA
** * *
15099183 GCTGGTCGTAGAGGCAGATTACGC-AAGCCAGGGATCG
65 GCCAGTCGGAGAGGC--ATAACGCGAAGCCAGGGATCG
15099220 ACCTGGTCCC
Statistics
Matches: 209, Mismatches: 39, Indels: 22
0.77 0.14 0.08
Matches are distributed among these distances:
155 3 0.01
156 4 0.02
157 66 0.32
158 15 0.07
159 112 0.54
160 3 0.01
161 6 0.03
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
CCAGTCGGAGAGGCATAACGCGAAGCCAGGGATCGGCCCGATCCCTCTCTGGGTGCTGCCAGTCC
CGCTACCACAACCCTCAGTCCGGTCCGA
Found at i:15099321 original size:26 final size:26
Alignment explanation
Indices: 15099278--15099330 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15099268 CCAGTCTAAT
* *
15099278 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAACGAACTATGTATG
* *
15099304 CTTAGACTGGGGACGAACTATGTATG
1 CTTAGACTGAGAACGAACTATGTATG
15099330 C
1 C
15099331 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTATGTATG
Found at i:15100718 original size:26 final size:26
Alignment explanation
Indices: 15100682--15100734 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15100672 CCGATCTGAT
15100682 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15100708 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15100734 C
1 C
15100735 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15100932 original size:26 final size:25
Alignment explanation
Indices: 15100891--15100942 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15100881 CTGGTCCGAT
15100891 CTTAGACTAGAATGAACTCAGTATG
1 CTTAGACTAGAATGAACTCAGTATG
* *
15100916 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TAGAATGAACTCAGTATG
15100942 C
1 C
15100943 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCAGTATG
Found at i:15101434 original size:711 final size:709
Alignment explanation
Indices: 15099999--15101487 Score: 1872
Period size: 709 Copynumber: 2.1 Consensus size: 709
15099989 GGCTCAAAAT
* * *
15099999 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * *
15100064 CGATCGAAGAGGCCGGACGAAGAGGTAGAATGCGCAAGCTAGGGATCAACCCGGTCCCCCCCTGC
66 CGACCGAAGAGGCCGGACCAAGAGGCAGAATGCACAAGCTAAGGATCAACCCGGTCCCCCCCTGC
* ** * * *
15100129 GTGCTACCATCCTATTGCTGGTCCTACTGCCACAACTGTTGGTTCAGCTTGATCTTAGAGTAGAA
131 GTGCTACCATCCTACTGCTGGTCCTACTGCCACAACCCTCGGTTCAGCTCGATCTTAGACTAGAA
* * * *
15100194 TGAACTCTGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAATCGAGCGT
196 TGAACTCAGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGC
* ** **
15100259 GTAGGTGATCAGTCAGCCAGAGAGGCAGAATGCACAAGTCGGGGACTGACCCGATCCCCCCTACG
261 GTAGGTGATCAGTCAGCCAGAGAGGCAGAATACACAAACCGGGGACCAACCCGATCCCCCCTACG
* *
15100324 TGATGTCGATCCTACCATCGCAACCCTCGGTCCAGTTCGATCTTGCACTGGGAATGAACTCCGTA
326 TGATGTCGATCCTACCACCGCAACCCTCGGTCCAGTTCGATCTTGCACTAGGAATGAACTCCGTA
* * *
15100389 TGCCTAAGTCAACCCACGAAACGAGCGTTCGGACGCTGAGCCGACCAAAGAGGCATAATGCGCAA
391 TACCTAAGTCAACCCACGAAACGAGCATGCGGACGCTGAGCCGACCAAAGAGGCATAATGCGCAA
** * * * * ** *
15100454 GCTGGGGATCGGCCTGGTCCCCCTCTACGTGCTATCGGTCCCACTGCCACAACCCTCGGTCCGAC
456 GCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAAACCTCACTCAGAC
* * *
15100519 TGGGGTTTAGATATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACAGGCGTGCAGGTGC
521 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACAGGCGTGCAGGCGC
*
15100584 TCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCAGCGTGCGGTCG
586 TCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCAGCGTGCGGTCG
* *
15100649 ATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATG
651 ATCCTGCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * **
15100708 CTTAGACTGGGGATGAACTTCATATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * ** *
15100773 CGACCGGAGAGGCC-GACCAGAGAGGCATAATGCACAAG-TCAAGGATCGGCCCGGT-CCCCCTT
66 CGACCGAAGAGGCCGGACCA-AGAGGCAGAATGCACAAGCT-AAGGATCAACCCGGTCCCCCCCT
* * * * *
15100835 GCGTGCTACCAATCCTACTGCTGGTCCTGCTGTCGCAACCCTCGG-TCTGGTCCGATCTTAGACT
129 GCGTGCTACC-ATCCTACTGCTGGTCCTACTGCCACAACCCTCGGTTCAGCT-CGATCTTAGACT
* * *
15100899 AGAATGAACTCAGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTATGAAACGA
192 AGAATGAACTCAGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
* * * * * *
15100964 GCGCG-CGG-GCACTCAG-CTGATCAGAGAGGTAGAATACGA-AAACCGGGGACCAACCTGGTCC
257 GCGCGTAGGTG-A-TCAGTCAG-CCAGAGAGGCAGAATAC-ACAAACCGGGGACCAACCCGATCC
* * ** * **
15101025 CCCCTTGCGT-ACTGTTGATCCTACTGCCGTAACCCTCGGTCTGGTTCGATCTTAG-ACTAGGAA
318 CCCC-TACGTGA-TGTCGATCCTACCACCGCAACCCTCGGTCCAGTTCGATCTT-GCACTAGGAA
* * **
15101088 TGAACTCCGTATACCTAAGTCAACCCATGAAACGAGCATGCAGG-TGCTGAGCCGACCGGAGAGG
380 TGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCATGC-GGACGCTGAGCCGACCAAAGAGG
* *
15101152 CATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTATGTGCTACCGGTCCCGCTGCCACAAA
444 CATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAAA
* * * *
15101217 CCTCACTCAGGCTGGGGGCTTAGACATGGAATGAACTCCCTATGCCTAGGCCATCCCATGAAACG
509 CCTCACTCAGACT-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACA
* * *
15101282 GGCGTG-AGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATTGGCCC-AGTCCC
573 GGCGTGCA-GGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGA-TCCC
* ** * *
15101345 TCCTTCGTGCTGTCGATCCTGCTGTCACAACCCTTGGTCCTG-TCCGATCTTAGACTGGGAATGA
636 CCCAGCGTGCGGTCGATCCTGCTGTCACAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGA
*
15101409 ACTTCATATG
700 ACTCCATATG
*
15101419 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
15101484 CGAC
66 CGAC
15101488 TAGAGAGGCA
Statistics
Matches: 661, Mismatches: 103, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
707 1 0.00
708 30 0.05
709 233 0.35
710 168 0.25
711 228 0.34
712 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (709 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCGAAGAGGCCGGACCAAGAGGCAGAATGCACAAGCTAAGGATCAACCCGGTCCCCCCCTGC
GTGCTACCATCCTACTGCTGGTCCTACTGCCACAACCCTCGGTTCAGCTCGATCTTAGACTAGAA
TGAACTCAGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGC
GTAGGTGATCAGTCAGCCAGAGAGGCAGAATACACAAACCGGGGACCAACCCGATCCCCCCTACG
TGATGTCGATCCTACCACCGCAACCCTCGGTCCAGTTCGATCTTGCACTAGGAATGAACTCCGTA
TACCTAAGTCAACCCACGAAACGAGCATGCGGACGCTGAGCCGACCAAAGAGGCATAATGCGCAA
GCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAAACCTCACTCAGAC
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACAGGCGTGCAGGCGC
TCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCAGCGTGCGGTCG
ATCCTGCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:15101444 original size:26 final size:26
Alignment explanation
Indices: 15101393--15101445 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15101383 CCTGTCCGAT
*
15101393 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15101419 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15101445 C
1 C
15101446 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15101496 original size:711 final size:708
Alignment explanation
Indices: 15099999--15101496 Score: 1856
Period size: 711 Copynumber: 2.1 Consensus size: 708
15099989 GGCTCAAAAT
* *
15099999 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAAC
* * * * *
15100064 CGA-TCGAAGAGGCCGGACGAAGAGGTAGAATGCGCAAGCTAGGGATCAACCCGGTCCCCCCCTG
65 CGACTAG-AGAGGCCGGACCAAGAGGCAGAATGCACAAGCTAAGGATCAACCCGGTCCCCCCCTG
* ** * * *
15100128 CGTGCTACCATCCTATTGCTGGTCCTACTGCCACAACTGTTGGTTCAGCTTGATCTTAGAGTAGA
129 CGTGCTACCATCCTACTGCTGGTCCTACTGCCACAACCCTCGGTTCAGCTCGATCTTAGACTAGA
* * *
15100193 ATGAACTCTGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAATCGAGCG
194 ATGAACTCAGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG
* * ** **
15100258 TGTAGGTGATCAGTCAGCCAGAGAGGCAGAATGCACAAGTCGGGGACTGACCCGATCCCCCCTAC
259 CGTAGGTGATCAGTCAGCCAGAGAGGCAGAATACACAAACCGGGGACCAACCCGATCCCCCCTAC
* *
15100323 GTGATGTCGATCCTACCATCGCAACCCTCGGTCCAGTTCGATCTTGCACTGGGAATGAACTCCGT
324 GTGATGTCGATCCTACCACCGCAACCCTCGGTCCAGTTCGATCTTGCACTAGGAATGAACTCCGT
* * *
15100388 ATGCCTAAGTCAACCCACGAAACGAGCGTTCGGACGCTGAGCCGACCAAAGAGGCATAATGCGCA
389 ATACCTAAGTCAACCCACGAAACGAGCATGCGGACGCTGAGCCGACCAAAGAGGCATAATGCGCA
** * * * * ** *
15100453 AGCTGGGGATCGGCCTGGTCCCCCTCTACGTGCTATCGGTCCCACTGCCACAACCCTCGGTCCGA
454 AGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAAACCTCACTCAGA
* * *
15100518 CTGGGGTTTAGATATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACAGGCGTGCAGGTG
519 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACAGGCGTGCAGGCG
*
15100583 CTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCAGCGTGCGGTC
584 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCAGCGTGCGGTC
* *
15100648 GATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATG
649 GATCCTGCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * **
15100708 CTTAGACTGGGGATGAACTTCATATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGCGCTCAAC
** * ** *
15100773 CGACCGGAGAGGCC-GACCAGAGAGGCATAATGCACAAG-TCAAGGATCGGCCCGGT-CCCCCTT
65 CGACTAGAGAGGCCGGACCA-AGAGGCAGAATGCACAAGCT-AAGGATCAACCCGGTCCCCCCCT
* * * * *
15100835 GCGTGCTACCAATCCTACTGCTGGTCCTGCTGTCGCAACCCTCGG-TCTGGTCCGATCTTAGACT
128 GCGTGCTACC-ATCCTACTGCTGGTCCTACTGCCACAACCCTCGGTTCAGCT-CGATCTTAGACT
* * *
15100899 AGAATGAACTCAGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTATGAAACGA
191 AGAATGAACTCAGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
* * * * * *
15100964 GCGCG-CGG-GCACTCAG-CTGATCAGAGAGGTAGAATACGA-AAACCGGGGACCAACCTGGTCC
256 GCGCGTAGGTG-A-TCAGTCAG-CCAGAGAGGCAGAATAC-ACAAACCGGGGACCAACCCGATCC
* * ** * **
15101025 CCCCTTGCGT-ACTGTTGATCCTACTGCCGTAACCCTCGGTCTGGTTCGATCTTAG-ACTAGGAA
317 CCCC-TACGTGA-TGTCGATCCTACCACCGCAACCCTCGGTCCAGTTCGATCTT-GCACTAGGAA
* * **
15101088 TGAACTCCGTATACCTAAGTCAACCCATGAAACGAGCATGCAGG-TGCTGAGCCGACCGGAGAGG
379 TGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCATGC-GGACGCTGAGCCGACCAAAGAGG
* *
15101152 CATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTATGTGCTACCGGTCCCGCTGCCACAAA
443 CATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAAA
* * * *
15101217 CCTCACTCAGGCTGGGGGCTTAGACATGGAATGAACTCCCTATGCCTAGGCCATCCCATGAAACG
508 CCTCACTCAGACT-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACA
* * *
15101282 GGCGTG-AGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATTGGCCC-AGTCCC
572 GGCGTGCA-GGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGA-TCCC
* ** * *
15101345 TCCTTCGTGCTGTCGATCCTGCTGTCACAACCCTTGGTCCTG-TCCGATCTTAGACTGGGAATGA
635 CCCAGCGTGCGGTCGATCCTGCTGTCACAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGA
*
15101409 ACTTCATATG
699 ACTCCATATG
15101419 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAAC
15101484 CGACTAGAGAGGC
65 CGACTAGAGAGGC
15101497 AGGATGCACA
Statistics
Matches: 667, Mismatches: 103, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
707 1 0.00
708 30 0.04
709 231 0.35
710 171 0.26
711 233 0.35
712 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (708 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAACC
GACTAGAGAGGCCGGACCAAGAGGCAGAATGCACAAGCTAAGGATCAACCCGGTCCCCCCCTGCG
TGCTACCATCCTACTGCTGGTCCTACTGCCACAACCCTCGGTTCAGCTCGATCTTAGACTAGAAT
GAACTCAGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGCG
TAGGTGATCAGTCAGCCAGAGAGGCAGAATACACAAACCGGGGACCAACCCGATCCCCCCTACGT
GATGTCGATCCTACCACCGCAACCCTCGGTCCAGTTCGATCTTGCACTAGGAATGAACTCCGTAT
ACCTAAGTCAACCCACGAAACGAGCATGCGGACGCTGAGCCGACCAAAGAGGCATAATGCGCAAG
CCAGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAAACCTCACTCAGACT
GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCATGAAACAGGCGTGCAGGCGCT
CAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCAGCGTGCGGTCGA
TCCTGCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:15102424 original size:26 final size:26
Alignment explanation
Indices: 15102395--15102447 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15102385 CCGGTCTGAT
15102395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15102421 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15102447 C
1 C
15102448 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15103154 original size:26 final size:26
Alignment explanation
Indices: 15103117--15103167 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15103107 GCTCAAAATC
15103117 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
15103143 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
15103168 CCTAAGCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:15103667 original size:26 final size:26
Alignment explanation
Indices: 15103617--15103669 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15103607 CCGGTCTGAT
*
15103617 CTTAGACTGGAAATGAACTATGTATG
1 CTTAGACTGGAAATGAACTACGTATG
** *
15103643 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTACGTATG
15103669 C
1 C
15103670 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTACGTATG
Found at i:15104377 original size:26 final size:26
Alignment explanation
Indices: 15104338--15104390 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15104328 GGCTCAAAAT
*
15104338 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
15104364 CTTAGACATG-GAATGAGCTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
15104390 C
1 C
15104391 CGATGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15104707 original size:159 final size:157
Alignment explanation
Indices: 15104363--15104830 Score: 485
Period size: 159 Copynumber: 3.0 Consensus size: 157
15104353 AACTCTGTAT
* * * * * * *
15104363 GCTTAGACATGGAATG-AGCTCCGTATGCCGATGCCAACCCATGAAACAAGGGTACGGGCGCTCA
1 GCTTAGACATGGAATGAAG-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* * * * *
15104427 GCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCCGCCTGATTCCCCCTGCGTGCTGTCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGAT-CGCCCGATCCCCCCTGCGTGCTGCCGATC
* * * *
15104492 TTGCTGCCACAACCCTTGGTCCGATCTGA
129 CTGCTGCCACAACCCTCGATCCGAGCTGA
* * * * * *
15104521 TCTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGAGCTGA
1 GCTTAGACAT-GGAATGAAGTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* * * *
15104585 GCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCG-CCCGATCCCCC-CTGCGTGCTGCCGAT
* * *
15104650 CCTGCTACCACAACCCTCGATTCG-GCTGGG
128 CCTGCTGCCACAACCCTCGATCCGAGCT-GA
* * * *
15104680 GCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCA-CTCA
1 GCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCA
* * *
15104744 GCCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCTCCTGTGTGCTGCCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCCCGATCCCCCCTGCGTGCTGCCGATC
* * *
15104809 CTACTGTCGCAACCCTCGATCC
129 CTGCTGCCACAACCCTCGATCC
15104831 AATCCAATCT
Statistics
Matches: 251, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 119 0.47
159 126 0.50
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGCCCGATCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGATCCGAGCTGA
Found at i:15105236 original size:26 final size:26
Alignment explanation
Indices: 15105207--15105259 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15105197 CCAGTCCAAT
15105207 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
15105233 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
15105259 C
1 C
15105260 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15105397 original size:355 final size:344
Alignment explanation
Indices: 15104522--15105447 Score: 933
Period size: 355 Copynumber: 2.6 Consensus size: 344
15104512 CCGATCTGAT
* *
15104522 CTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGAGCTGAG
1 CTTAGACATAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTGAG
* * * * *
15104586 CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGTC
66 CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
* * * *
15104651 CTGCTACCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCA
131 CTGCTAGCACAACCCTCGATTCGTCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * * *
15104716 ACCCACGAAATGGGTGTGCGGGCACTCAGCCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCG
196 ACCCACGAAATGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGACCA
* *
15104781 GCCCGATCCCTCCTGTGTGCTGCCGATCCTACTGTCGCAACCCTCGATCCAATCCAATCTTAGAT
261 GCCCGATCCCTCCTGTGTGCTGCCGATCCTACTATCGCAAACCTCGATCCAATCCAATCTTAGAT
15104846 AGGGAATGAACTCCATACG
326 AGGGAATGAACTCCATACG
* * * *
15104865 CTTAGA-ATGGGGATGAATTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCA-CTGA
1 CTTAGACATAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG-AGCTGA
* * * *
15104928 GCC-AGCCAGAGAGGCATAATGCGGAAG-TCGGGGA-CTAGCCCGATCCCCCTCTGGGTGCTACC
65 GCCGA-CCGGAGAGGCATAATGCGCAAGCT-GGGGATCGA-CCCGATCCCCCTCTGCGTG-----
* * **
15104990 AATCTCGCTGCCAGTCCTGCTGGCACAACATTC-AGTTCGGT-TGGGGCTTAGACATGGAATGAA
122 ---CT-G-T-CGA-TCCTGCTAGCACAACCCTCGA-TTC-GTCTGGGGCTTAGACATGGAATGAA
*
15105053 CTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAA
178 CTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAA
* * *
15105118 TGTGCAAGCCGGGGACCAGCCCGATCCCCTCTTGCGTGCTGCTGATCCTGCTGCTGGTCCTGCTA
243 TGCGCAAGCCGGGGACCAGCCCGAT-CCCTC---C-TG-TG-TG---CTGC--C-GATCCTACTA
* *
15105183 TCGCAAACCTCGATCCAGTCCAATCTTAGACT-GGGAATGAACTCCATATG
295 TCGCAAACCTCGATCCAATCCAATCTTAGA-TAGGGAATGAACTCCATACG
* * * * *
15105233 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGTGCTCAG
1 CTTAGACATAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTGAG
* * * *
15105297 CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCCCC-CTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
* * ** * * *
15105361 CTG-TTGCAGCAACCCTCGATCCGATCT-GATCTTAGACTTTGAATGAACTCCGTATGCCTAAGT
131 CTGCTAGCA-CAACCCTCGATTCG-TCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* *
15105424 CAACACATGAAATGAGCGTACGGG
194 CAACCCACGAAATGAGCGTACGGG
15105448 TGCTGAGCCG
Statistics
Matches: 472, Mismatches: 69, Indels: 72
0.77 0.11 0.12
Matches are distributed among these distances:
342 2 0.00
343 99 0.21
344 1 0.00
351 2 0.00
352 1 0.00
354 7 0.01
355 183 0.39
356 10 0.02
357 1 0.00
358 1 0.00
359 3 0.01
360 2 0.00
361 2 0.00
362 2 0.00
365 4 0.01
367 7 0.01
368 138 0.29
369 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (344 bp):
CTTAGACATAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTGAG
CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
CTGCTAGCACAACCCTCGATTCGTCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAATGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGACCA
GCCCGATCCCTCCTGTGTGCTGCCGATCCTACTATCGCAAACCTCGATCCAATCCAATCTTAGAT
AGGGAATGAACTCCATACG
Found at i:15105580 original size:159 final size:159
Alignment explanation
Indices: 15105232--15105734 Score: 554
Period size: 158 Copynumber: 3.2 Consensus size: 159
15105222 AACTCCATAT
* * *
15105232 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* ** * *
15105297 CCGACCGGAGAGGCAGAATGCACAAG-CTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATC
66 CCGATCGGAGAGGCAGAATGCGTAAGTC-GGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATC
15105361 -CTGTTGCAGCAACCCTCGATCCGATCTGA
130 TCTGTTGCAGCAACCCTCGATCCGATCTGA
* * * * * * * *
15105390 TCTTAGACTTTGAATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGCGTACGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * *
15105455 CCGGTCGGAGAGGCATAATGCGTAAGTCGGGGATCGACCCGGTACCCCTCTACGTGTTGTCGATC
66 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGT-CCCCTCTGCGTGCTGTCGATC
*
15105520 TC-GTTGCCA-CAACCCTCGATCCGA-CTGGG
130 TCTGTTG-CAGCAACCCTCGATCCGATCT-GA
* * * *
15105549 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCACGAAATGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * * *
15105614 TCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGGTCCCCTCTGCGTGCTGCCGATCT
66 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCT
* * * * *
15105679 -TGCTGTC-GTAAACCTCGATCTGGTCTGA
131 CTGTTG-CAGCAACCCTCGATCCGATCTGA
* * *
15105707 TCTTAGAC-TGGGAATCAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15105735 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 53, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 148 0.52
159 131 0.46
160 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCT
CTGTTGCAGCAACCCTCGATCCGATCTGA
Found at i:15105737 original size:26 final size:26
Alignment explanation
Indices: 15105708--15105760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15105698 CTGGTCTGAT
15105708 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
* *
15105734 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
15105760 C
1 C
15105761 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTGTATG
Found at i:15106798 original size:159 final size:158
Alignment explanation
Indices: 15106443--15106800 Score: 362
Period size: 158 Copynumber: 2.3 Consensus size: 158
15106433 AACTCTATAT
* * ** * *
15106443 GCTTAGA-AGTGGAATGAACTCCGTTTGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACA-TGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCCTACGGGTACTCA
* * *** * * *
15106507 GCTAGCTGGAGAGGAAGAATGCGCAAGCCAAGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATC
65 GCCAACCAAAGAGGAAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTACGCGCTGTCGATC
* * *
15106572 CTACTGCCACAACCTTTGGTCTGGTCCGA
130 CGACTGCCACAACCCTCGGTCTGGTCCGA
* * * * *
15106601 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACAAAACGAGCCTGCGGGTACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCCTACGGGTACTCA
* * * * ** * *
15106665 GCCAACCAAAGAGGCATAATGCGTAAGCCAAGGATCGACCTGGTCCCCTCCTGTGCGCTGTTGGT
65 GCCAACCAAAGAGGAAGAATGCGCAAGCCAAGGATCGACCCGGTCCCC-CCTACGCGCTGTCGAT
* *
15106730 CCGACTGCCACAACCCTCGGTCTGG-CTGGG
129 CCGACTGCCACAACCCTCGGTCTGGTC-CGA
*
15106760 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
15106801 TGAAATGAGC
Statistics
Matches: 159, Mismatches: 36, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 88 0.55
159 69 0.43
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCCTACGGGTACTCAG
CCAACCAAAGAGGAAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTACGCGCTGTCGATCC
GACTGCCACAACCCTCGGTCTGGTCCGA
Found at i:15106837 original size:159 final size:158
Alignment explanation
Indices: 15106443--15106842 Score: 403
Period size: 159 Copynumber: 2.5 Consensus size: 158
15106433 AACTCTATAT
* * * *
15106443 GCTTAGA-AGTGGAATGAACTCCGTTTGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACA-TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCA
* * * * * * *
15106507 GCTAGCTGGAGAGGAAGAATGCGCAAGCCAAGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATC
65 GCCAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTACGCGCTGTCGATC
* * *
15106572 CTACTGCCACAACCTTTGGTCTGGTCCGA
130 CGACTGCCACAACCCTCGGTCTGGTCCGA
* * * ** * *
15106601 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACAAAACGAGCCTGCGGGTA-CTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-AGCTC
** * * * ** * *
15106664 AGCCAACCAAAGAGGCATAATGCGTAAGCCAAGGATCGACCTGGTCCCCTCCTGTGCGCTGTTGG
64 AGCCAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCC-CCTACGCGCTGTCGA
* *
15106729 TCCGACTGCCACAACCCTCGGTCTGG-CTGGG
128 TCCGACTGCCACAACCCTCGGTCTGGTC-CGA
* * *
15106760 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
*
15106825 CCGACCGGAGAGGCAGAA
66 CCAACCGGAGAGGCAGAA
15106843 AGCACAAGTC
Statistics
Matches: 189, Mismatches: 46, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.01
158 88 0.47
159 99 0.52
160 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
CCAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTACGCGCTGTCGATCC
GACTGCCACAACCCTCGGTCTGGTCCGA
Found at i:15106969 original size:26 final size:26
Alignment explanation
Indices: 15106919--15106971 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15106909 CCAGTCTGAT
*
15106919 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTACGTATG
** *
15106945 CTTAGACTGGGGATGAACTATGTATG
1 CTTAGACTGGAAATGAACTACGTATG
15106971 C
1 C
15106972 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTACGTATG
Found at i:15107155 original size:25 final size:25
Alignment explanation
Indices: 15107118--15107167 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
15107108 AGTCTGATCT
15107118 TAGACTGGAAATGAACTCCATATGC
1 TAGACTGGAAATGAACTCCATATGC
*
15107143 TAGACATGG-AATGAACTCCGTATGC
1 TAGAC-TGGAAATGAACTCCATATGC
15107168 CTCAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
TAGACTGGAAATGAACTCCATATGC
Found at i:15107598 original size:158 final size:158
Alignment explanation
Indices: 15107143--15107599 Score: 424
Period size: 158 Copynumber: 2.9 Consensus size: 158
15107133 CTCCATATGC
* * * ** *
15107143 TAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCATGAAACAAACGTGTGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCG
* * *
15107208 GTCGGAGAGGTAGAACT-CGTAAGCCGGGGATCGGCCTGATCCCCCCTATGTGCTATCT-ATCCT
66 GTCGGAGAGGTAGAA-TGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTA-CTGATCCT
* * * * *
15107271 ATTGTCGCAACCCTCGGTTCGATTTGATCT
129 ACTGTCGCAACCCTCGCTCCGATTGGAGCT
* * * * *
15107301 TAGAC-TGGGAATGAAC-CCCGTATGCCTAAGTCAAACCATGAAACGAGTGTAC-GGCGTTGAGC
1 TAGACAT-GGAATGAACTCCC-TATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
* * * * ** * * * * *
15107363 CAGCCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGGTCCCTCACTGTATCCTA-TCGGTC
64 CGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCC-CCCTGTGTGCTACT-GATC
** * * *
15107427 CCGCTGCCTCAACCCTCGCTCC-AGTTGGGGCT
127 CTACTGTCGCAACCCTCGCTCCGA-TTGGAGCT
* * **
15107459 TAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAATCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCG
* *
15107524 GTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTACTGATCCTAC
66 GTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTACTGATCCTAC
*
15107589 TATCGCAACCC
131 TGTCGCAACCC
15107600 CCAGTCCAGT
Statistics
Matches: 226, Mismatches: 62, Indels: 22
0.73 0.20 0.07
Matches are distributed among these distances:
156 2 0.01
157 46 0.20
158 130 0.58
159 48 0.21
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCG
GTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTACTGATCCTAC
TGTCGCAACCCTCGCTCCGATTGGAGCT
Found at i:15107656 original size:26 final size:26
Alignment explanation
Indices: 15107615--15107667 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15107605 CCAGTCCGAT
15107615 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
15107641 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACCCCGTATG
15107667 C
1 C
15107668 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:15108332 original size:26 final size:26
Alignment explanation
Indices: 15108294--15108346 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15108284 GGCTTAAACT
*
15108294 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15108320 CTTAGAC-GTGGAAAGAACTCTGTATG
1 CTTAGACTG-GGAAAGAACTCCGTATG
15108346 C
1 C
15108347 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15109587 original size:25 final size:26
Alignment explanation
Indices: 15109541--15109592 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15109531 CTGGTTCGAT
15109541 CTTAGACTGGGAATGAACTCCGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
*
15109567 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
15109592 C
1 C
15109593 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:15109868 original size:158 final size:157
Alignment explanation
Indices: 15109566--15109852 Score: 396
Period size: 158 Copynumber: 1.8 Consensus size: 157
15109556 AACTCCGGAT
* * * * *
15109566 GCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAAC
1 GCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
* * * * * *
15109631 CGACCGGAGAGGCATAATGCGTAAGCCGAGGATTAGCCTGGTCCCCCGCTACGTGCTGTCGGTCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGGTCCCCCACTACGTGCTGTCGATCC
15109696 CCTACCACAACCCTCGATCCGGCTAGG
131 CCTACCACAACCCTCGATCCGGCTAGG
* * *
15109723 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAA
* * * *
15109788 CCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCAACCTGGT-CCCCATTGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGGTCCCCCACTACGTGCTGTCGATC
15109852 C
130 C
15109853 TGCTATCGCA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
157 26 0.23
158 85 0.77
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGGTCCCCCACTACGTGCTGTCGATCC
CCTACCACAACCCTCGATCCGGCTAGG
Found at i:15109885 original size:341 final size:342
Alignment explanation
Indices: 15109197--15110197 Score: 1337
Period size: 341 Copynumber: 2.9 Consensus size: 342
15109187 GGAAACACCT
* *
15109197 ATCTTAGACTGGGAATGAACTCCGTTTGGTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * ** ** * * * *
15109262 CCATGAAATGAGTGTATGGGCTTTCAGTCGACTGGAGAGGCATCATGCGCAAGCTGGGGATTAGC
66 CCACGAAACGAGTGTATGGGCGCTCAACCGACCGGAGAGGCATAATGCGTAAGCCGGGGATTAGC
* * * ** * * * *
15109327 CCGATCTCCTACTGCGTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACA
131 CTGGTCCCCCGCTACGTGCTGTCGGTCC-CCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACA
* * * *
15109392 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGTCGATCGGA
195 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGA
* * * * * * *
15109457 GAGGCAGAATGCACAGGCCGAGGATCGGCCTGG-CCCCCCTGCGTGCT-ACCAGTCCTACTGTTG
260 GAGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGA-TCCTGCTATCG
* * *
15109520 CAACCCTCGATCTGGTTCG
324 CAACCCTCGATCCGATCCG
*
15109539 ATCTTAGACTGGGAATGAACTCCGGATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* *
15109603 CCACGAAACGAGCGTATGGGCGCTCAACCGACCGGAGAGGCATAATGCGTAAGCCGAGGATTAGC
66 CCACGAAACGAGTGTATGGGCGCTCAACCGACCGGAGAGGCATAATGCGTAAGCCGGGGATTAGC
* * * *
15109668 CTGGTCCCCCGCTACGTGCTGTCGGTCCCCTACCACAACCCTCGATCCGGCTAGGGCTTAGACGT
131 CTGGTCCCCCGCTACGTGCTGTCGGTCCCCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAT
* *
15109733 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAG
196 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAG
* ** **
15109798 AGGCAGAATGTGCAAGCCGAGGATCAACCTGGTCCCCATTGCGTGCTGTCGATCCTGCTATCGCA
261 AGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCA
15109863 ACCCTC-AGTCCGATCCG
326 ACCCTCGA-TCCGATCCG
* *
15109880 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * *
15109945 CCACAAAACGAGTGTGTGGGTGCTCAACCGACCGAAGAGGCATAATGCGTAAGCCGGGGATTAG-
66 CCACGAAACGAGTGTATGGGCGCTCAACCGACCGGAGAGGCATAATGCGTAAGCCGGGGATTAGC
* * * *
15110009 CTCGGTCCCCCGCTATGCGCTGTCGGTCCCGCTGCCACAACCTTCGGTCTGGCTGGGGCTTAGAC
131 CT-GGTCCCCCGCTACGTGCTGTCGGTCCC-CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC
* * *
15110074 TTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGA
194 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGG
* * *
15110139 AGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
259 AGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTG
15110198 TTGCCTATCC
Statistics
Matches: 575, Mismatches: 78, Indels: 11
0.87 0.12 0.02
Matches are distributed among these distances:
340 118 0.21
341 172 0.30
342 145 0.25
343 140 0.24
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (342 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGTGTATGGGCGCTCAACCGACCGGAGAGGCATAATGCGTAAGCCGGGGATTAGC
CTGGTCCCCCGCTACGTGCTGTCGGTCCCCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCA
ACCCTCGATCCGATCCG
Found at i:15109886 original size:158 final size:157
Alignment explanation
Indices: 15109566--15109908 Score: 386
Period size: 158 Copynumber: 2.2 Consensus size: 157
15109556 AACTCCGGAT
* * * * *
15109566 GCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAAC
1 GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
* * * * * *
15109631 CGACCGGAGAGGCATAATGCGTAAGCCGAGGATTAGCCTGGTCCCCCGCTACGTGCTGTCGGTCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGGTCCCCCACTACGTGCTGTCGATCC
*
15109696 CCTACCACAACCCTCGATCCGGCTAGG
131 CCTACCACAACCCTCGATCCGGCTAGA
* * * *
15109723 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAA
* * * *
15109788 CCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCAACCTGGT-CCCCATTGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGGTCCCCCACTACGTGCTGTCGATC
* * * * *
15109852 CTGCTATCGCAACCCTC-AGTCC-GATCCGA
130 C-CCTACCACAACCCTCGA-TCCGGCT-AGA
*
15109881 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACT-GGAATGAACTCCATATGC
15109909 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 26, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
157 30 0.19
158 125 0.81
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGGTCCCCCACTACGTGCTGTCGATCC
CCTACCACAACCCTCGATCCGGCTAGA
Found at i:15109918 original size:26 final size:26
Alignment explanation
Indices: 15109882--15109934 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15109872 CCGATCCGAT
*
15109882 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
15109908 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
15109934 C
1 C
15109935 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15110582 original size:26 final size:26
Alignment explanation
Indices: 15110546--15110598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15110536 CTGGTCTGAT
*
15110546 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15110572 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15110598 C
1 C
15110599 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15111796 original size:26 final size:26
Alignment explanation
Indices: 15111759--15111809 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15111749 CAGTTTGATC
*
15111759 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCCTATGG
15111785 TTAGACAT-GGAATGAACTCCCTATG
1 TTAGAC-TGGGAATGAACTCCCTATG
15111810 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCCTATGG
Found at i:15111928 original size:184 final size:184
Alignment explanation
Indices: 15111601--15111963 Score: 451
Period size: 184 Copynumber: 2.0 Consensus size: 184
15111591 CGACTGGGGC
* * * * *
15111601 TTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAATGGGCGTGTGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* **
15111666 GGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCCCCCCTGTGTGCTATCGATCCTA
66 GGCCGAAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCCCCCCTACGTGCTATCGATCCTA
* ***
15111731 CTGCCATAACCCTCGATCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGG
131 CTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGG
*
15111785 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTC-GC
1 TTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TCAGC
* * * * * * * * *
15111849 TGGCTGAAGAGGCAGAATGTGCGAGTTGGGGATCAGCCC-AGTCCTCCCTACGTGCTGTCGATCT
65 CGGCCGAAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGA-TCCCCCCTACGTGCTATCGATCC
* * * **
15111913 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCG
129 TACTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCG
15111964 CAAGCCTAAG
Statistics
Matches: 150, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
183 1 0.01
184 147 0.98
185 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGAAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCCCCCCTACGTGCTATCGATCCTA
CTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGG
Found at i:15112204 original size:501 final size:498
Alignment explanation
Indices: 15111076--15112350 Score: 1425
Period size: 501 Copynumber: 2.5 Consensus size: 498
15111066 AGTCTTGCTG
* * ** *
15111076 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATAGAATGAACTCTGTATGCCTAAGCCTACCCAT
1 CCACAACCCTCGGTCCAG-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * * ** * * *
15111141 GAAACGAGTGTACGGGCGCTCAGCCGACCGAAGAGGCAGAATGCTCAAGTCAGGGAACGGCTCGA
65 GAAAAGGGCGTGCGGGCTCTCAGCCGGCCG-AGAGGCAGAATGCGCAAGTTGGGGATCAGCCCGA
* * *
15111206 TCTGCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCTGTCCGATCTTAGATTGGGA
129 TC-CCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGA
* * *
15111271 ATGAAC-CTCGTATGCTTAGACATGGAATAAACTCAATATGCCTAAGACAACCCTCGAAACGAGC
193 ATGAACTC-CGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGC
* * * * * *
15111335 GTGAGGGCAC-TCAGTCAATAGGAGAGGCAGAATACGTAAGTTTGGGATCAGCCCGGTCCCCCCT
257 GTGCGGGCGCTTCAGTCAATAGAAGAGGCAGAATACGCAAGTTGGGGATCAGCCCAGTCCCCCCT
* ** * *
15111399 GCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGATCTGATCTTACTAGGAATGAACTCTGT
322 ACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGATCCAATCTTACTAGGAATGAACTCCGC
* * * * * * * * * *
15111464 ATGCCTAAGTCAACCTAGGAAATGAGTGTGCAGACGCTCAGTCGGCCGGAGATGTATAATGCGCA
387 AAGCCTAAGCCAACCCAGGAAACGAGCGTGCAGACACTCAGCCGACCGGAGAAGCATAATGCGCA
* * * *
15111529 AGCCAGGGATCAGCCTGGTCCCCCTCTGCATGCTGTCGGTCCCACTG
452 AGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGCCAGTCCCACTA
* * * * *
15111576 CCATAATCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCC-AGTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * *
15111641 GAAATGGGCGTGTGGG-TGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCG
65 GAAAAGGGCGTGCGGGCT-CTCAGCCGGCC-GAGAGGCAGAATGCGCAAGTTGGGGATCAGCCCG
* * ** * **
15111705 ATCCCCCCTGTGTGCTATCGATCCTACTGCCATAACCCTCGATCCAGTTTGATCTTAGACTGGGA
128 ATCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGA
* * *
15111770 ATGAACTCCGTATGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCG
193 ATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCG
*** ** * *
15111835 TGCGGGCGCTTC-GCTGGCT-GAAGAGGCAGAATGTGCGAGTTGGGGATCAGCCCAGTCCTCCCT
258 TGCGGGCGCTTCAG-TCAATAGAAGAGGCAGAATACGCAAGTTGGGGATCAGCCCAGTCCCCCCT
* * * * *
15111898 ACGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCC
322 ACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGATCCAATCTT--ACTAGGAATGAACTCC
* * * * *
15111963 GCAAGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGACCGGAGAAGCATAATGTG
385 GCAAGCCTAAGCCAACCCAGGAAACGAGCGTGCAGACACTCAGCCGACCGGAGAAGCATAATGCG
** *
15112028 CAAGCC-GAGGATC-GACCCGGTCCCCCTCTGTGTGCTGCCAGTCCCGCTA
450 CAAGCCAG-GGATCAG-CCCGGTCCCCCTCTGCATGCTGCCAGTCCCACTA
* * *
15112077 CCACAACCCTCGGTCCAGTGGGAGCTTAGACATGGAATAAACTCCCTATGCCTAAACCAACCCAC
1 CCACAACCCTCGGTCCAGTGGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
*
15112142 GAAAAGGGCGTGCGGGCTCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTTGGGGATCAGCCCGG
65 GAAAAGGGCGTGCGGGCTCTCAGCCGGCC-GAGAGGCAGAATGCGCAAGTTGGGGATCAGCCCGA
* * * **
15112207 TCCCCCCTGCGTGCTGCCGATCCTGTTGTTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAA
129 TCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAA
* * * * **
15112272 TGAACTCCGTATGCTTAGAC-TAGGGATGAACTCCGTATACCTAAGTCAACCCACGAAATAAGCG
194 TGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCG
*
15112336 TGCGAGCGC-TCAGTC
258 TGCGGGCGCTTCAGTC
15112351 GACCAGAAAG
Statistics
Matches: 640, Mismatches: 121, Indels: 28
0.81 0.15 0.04
Matches are distributed among these distances:
499 193 0.30
500 119 0.19
501 327 0.51
502 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (498 bp):
CCACAACCCTCGGTCCAGTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
AAAAGGGCGTGCGGGCTCTCAGCCGGCCGAGAGGCAGAATGCGCAAGTTGGGGATCAGCCCGATC
CCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGC
GGGCGCTTCAGTCAATAGAAGAGGCAGAATACGCAAGTTGGGGATCAGCCCAGTCCCCCCTACGT
GCTATCGATCCTGCTACCGCAACCCTCGGTCTGATCCAATCTTACTAGGAATGAACTCCGCAAGC
CTAAGCCAACCCAGGAAACGAGCGTGCAGACACTCAGCCGACCGGAGAAGCATAATGCGCAAGCC
AGGGATCAGCCCGGTCCCCCTCTGCATGCTGCCAGTCCCACTA
Found at i:15112288 original size:26 final size:26
Alignment explanation
Indices: 15112259--15112309 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15112249 CCAGTCCGAT
15112259 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
15112285 CTTAGACTAGGGATGAACTCCGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
15112310 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15112909 original size:11 final size:11
Alignment explanation
Indices: 15112893--15112947 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
15112883 CGATTAGGCT
*
15112893 CTCCGATGATG
1 CTCCGACGATG
15112904 CTCCGACGATG
1 CTCCGACGATG
**
15112915 CTCCGGGGATG
1 CTCCGACGATG
15112926 CTCCGACGATG
1 CTCCGACGATG
*
15112937 CTCCGGCGATG
1 CTCCGACGATG
15112948 GTGCCCCGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:15112942 original size:22 final size:22
Alignment explanation
Indices: 15112900--15112947 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
15112890 GCTCTCCGAT
*
15112900 GATGCTCCGACGATGCTCCGGG
1 GATGCTCCGACGATGCTCCGGC
15112922 GATGCTCCGACGATGCTCCGGC
1 GATGCTCCGACGATGCTCCGGC
15112944 GATG
1 GATG
15112948 GTGCCCCGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (22 bp):
GATGCTCCGACGATGCTCCGGC
Found at i:15113469 original size:159 final size:158
Alignment explanation
Indices: 15113042--15113473 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 158
15113032 AACTCCGTAT
* * * *
15113042 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGTACGGACGCTCAG
* * * * *
15113107 CTGGCCGGAGAGGCAGAATGCGCAAGCC-AGGGATC-AGCCCGGTCCCCCCTACGTGTTGTCGAT
66 CCGACCGAAGAGGCAAAATGCGCAAGCCGA-GGATCGA-CCCGGTCCCCCCTACGTGCTGTCGAT
* * **
15113170 CCTGCTGCTGCAACCCTCAGTCCAGTCCGA
129 CCCGCTACCACAACCCTCAGTCCAGTCCGA
* * * * * * ** *
15113200 TCTTAGAC-TCGAAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGCATTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGTACGGACGCTCA
* * * * * * *
15113264 GTCGATCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCACGGTCCCCCTCTACGTGCTGTCGAT
65 GCCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTACGTGCTGTCGAT
* * * * *
15113329 CCCGCTACCACAACCCT-TGAT-CTGGCTGGG
129 CCCGCTACCACAACCCTCAG-TCCAGTC-CGA
* * * *
15113359 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CAAGCAAAATGGGAGTACGGTCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAA-CAAAATGAGCGTACGGACGCTCA
*
15113423 GCCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCT
65 GCCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCT
15113474 GTGTGCTACC
Statistics
Matches: 214, Mismatches: 52, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 95 0.44
159 117 0.55
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGTACGGACGCTCAG
CCGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
CGCTACCACAACCCTCAGTCCAGTCCGA
Found at i:15113924 original size:26 final size:26
Alignment explanation
Indices: 15113895--15113950 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15113885 CCGGTCGGAT
15113895 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15113921 CTTAGACATGGAATGAATTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15113947 CTTA
1 CTTA
15113951 AGCCAACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15114243 original size:159 final size:159
Alignment explanation
Indices: 15113920--15114461 Score: 468
Period size: 159 Copynumber: 3.4 Consensus size: 159
15113910 AACTCCGTAT
* * * * * * * *
15113920 GCTTAGACATGGAATGAATTCCGTATGCTTAAGCCAACCAACGAAACGAGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
** ** * * * * * * **
15113985 CTGGTTGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTGCTCC--CTGCGTGCTATC-GA
66 CCAGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGAT-CCCCTTCTGCGTGCTGCCAG-
** * * * *
15114047 TCTTGCTGCCGCAACCCTTGGTCCAGG-TCCGA
129 TCCCGCTGCCACAACCCTCGGTCC-GGCT-GGG
* * * * * * * * *
15114079 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
* ** * * *
15114143 GCC-GACCGAATAGGCAAAATGCGCAAGCTGGGGATCGGCCCGGTCCCGC-TCTGCGTGCTGTCA
65 GCCAG-CCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCCC-CTTCTGCGTGCTGCCA
*
15114206 GTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
128 GTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
* * *
15114238 GCTTAGACATGGAATTAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * ** * *
15114303 CCAGTCGGAGAGGCCTAATGCGCAGGCCAGGGATCGACCCGATCCCCTTCTGCGTGTTGCCAGTC
66 CCAGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCCCCTTCTGCGTGCTGCCAGTC
* * *
15114368 CTGCTGCCACAACCCTTGGTCTGGCTGGG
131 CCGCTGCCACAACCCTCGGTCCGGCTGGG
* *
15114397 GTTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
15114462 TTGGCCAGAG
Statistics
Matches: 311, Mismatches: 63, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
158 5 0.02
159 271 0.87
160 34 0.11
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
CCAGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCCCCTTCTGCGTGCTGCCAGTC
CCGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:15114494 original size:159 final size:159
Alignment explanation
Indices: 15114173--15114501 Score: 419
Period size: 159 Copynumber: 2.1 Consensus size: 159
15114163 GCGCAAGCTG
* * * *
15114173 GGGATCGGCCCGGTCCCGCTCTGCGTGCTGTCAGTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
1 GGGATCGACCCGATCCCGCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
*
15114238 GCTTAGACATGGAATTAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
66 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * ** * *
15114303 CCAGTCGGAGAGGCCTAATGCGCAGGCCA
131 CCAGCCAGAGAGGCAGAATACGAAGGCCA
* * * *
15114332 GGGATCGACCCGATCCC-CTTCTGCGTGTTGCCAGTCCTGCTGCCACAACCCTTGGTCTGGCTGG
1 GGGATCGACCCGATCCCGC-TCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGG
* * * *
15114396 GGTTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
65 GGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCA
*** *
15114461 GTTGGCCAGAGAGGCAGAATACGTAAGG-TA
130 GCCAGCCAGAGAGGCAGAATACG-AAGGCCA
15114491 GGGATCGACCC
1 GGGATCGACCC
15114502 AGTCCCCCCT
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
158 1 0.01
159 141 0.97
160 3 0.02
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.19
Consensus pattern (159 bp):
GGGATCGACCCGATCCCGCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
CCAGCCAGAGAGGCAGAATACGAAGGCCA
Found at i:15114597 original size:26 final size:26
Alignment explanation
Indices: 15114556--15114608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15114546 CTGGTCTGAT
*
15114556 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15114582 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15114608 C
1 C
15114609 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15114794 original size:26 final size:26
Alignment explanation
Indices: 15114765--15114842 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
15114755 CCGATTCGAT
15114765 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15114791 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
15114817 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15114843 GCTAACCCAA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15115333 original size:26 final size:26
Alignment explanation
Indices: 15115293--15115343 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15115283 TAGTCAGATC
*
15115293 TTAGACTGGGAATGAATTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
* *
15115319 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15115344 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:15116333 original size:159 final size:159
Alignment explanation
Indices: 15116048--15116541 Score: 516
Period size: 159 Copynumber: 3.1 Consensus size: 159
15116038 GCGTAGACAT
* * * * * *
15116048 GGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGTTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGAGCTCAGCCGGTCGAAG
* * * * * * * *
15116113 AGGTAGATTGCGCAAGCCAGGGATTGGCCCT-GTCCCCCCCTACGTGCTGTCGATCTT-GCTGCC
66 AGGCAGAATGCACAAGCCGGGGATCGG-CCTGGTCCCCCTCTGCGTGCTGTCGGT-TTCGCTGCC
15116176 ACAACCCTCGGTCCGATTTGATCTTAGACTG
129 ACAACCCTCGGTCCGATTTGATCTTAGACTG
* * * **
15116207 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGAGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGAGCTCAGCCGGTCGAAG
* * *
15116272 AGGCATAATGCACAAGCCGGGGATCGGCTTGGTCCCCCTCTGCGTGCTGTAGGTTTCGCTGCCAC
66 AGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGTTTCGCTGCCAC
* **
15116337 AACCCTCGGTCC-AGTTGGGGCTTAGACAT-
131 AACCCTCGGTCCGA-TTTGATCTTAGAC-TG
* * * *
15116366 GGAATGAACTCCCTATGCCCAAGCCAACCCATGAAATGGGCATGCGGGCA-CTCAGCCGGTCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGG-AGCTCAGCCGGTCGAA
* * * * * *
15116430 GAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCT-TGCATGCTG-CCGATCCTGCTGCC
65 GAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGTTTC-GCTGCC
** * * *
15116493 GTAACCCTGGGTCCGGTCTGATCTTAGACTG
129 ACAACCCTCGGTCCGATTTGATCTTAGACTG
*
15116524 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
15116542 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 52, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.01
158 56 0.20
159 213 0.77
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGAGCTCAGCCGGTCGAAG
AGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGTTTCGCTGCCAC
AACCCTCGGTCCGATTTGATCTTAGACTG
Found at i:15116551 original size:26 final size:26
Alignment explanation
Indices: 15116515--15116567 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15116505 CCGGTCTGAT
15116515 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
15116541 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15116567 C
1 C
15116568 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15117290 original size:26 final size:26
Alignment explanation
Indices: 15117239--15117291 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15117229 GGCCAAAAAT
*
15117239 CTTAGACTGGTAATGAACTTCATATG
1 CTTAGACTGGTAATGAACTCCATATG
*
15117265 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGTAATGAACTCCATATG
15117291 C
1 C
15117292 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCATATG
Found at i:15117452 original size:26 final size:26
Alignment explanation
Indices: 15117423--15117475 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15117413 CCAATCCGAT
*
15117423 CTTATACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
15117449 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
15117475 C
1 C
15117476 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:15118090 original size:26 final size:26
Alignment explanation
Indices: 15118052--15118104 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15118042 GGCTCAAAAT
*
15118052 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15118078 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15118104 C
1 C
15118105 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15118451 original size:159 final size:157
Alignment explanation
Indices: 15118077--15118514 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 157
15118067 AATTCCATAT
* *
15118077 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * * ** *
15118142 CCGGCCAGAGAGGGAGAATGC-ACAACCCGGGGATCAGCTTGGTCCCCCCTGTGTGCTGTCGATC
66 CCGGCTAGAGAGGTAGAATGCGA-AAGCCGGGGATCAGCCTAGTCCCCCCTGCGTGCTACCAATC
* *
15118206 CTACTGCAGCAACCCTCAGTTGGTCTGA
130 CCACTGCAGCAACCCTCAGTTAGTCTGA
* * * * * *
15118234 TCTTAGA-TTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* *
15118298 ACCGGCT-GAGGAGGTATAATGCGAAAGCCGGGGATCAGCCTAGTCCCCCTTTGCGTGCTACCAA
65 ACCGGCTAGA-GAGGTAGAATGCGAAAGCCGGGGATCAGCCTAGTCCCCC-CTGCGTGCTACCAA
* * * *
15118362 TCCCGCTGCCA-TAACCCTCGGTCTAG-CTGGG
128 TCCCACTG-CAGCAACCCTCAGT-TAGTCT-GA
* * * * *
15118393 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * *
15118458 CCGGCTAGAGAGGTAGAATGCGCAAGCCGGGGAT-TGCCCAGGTCCCCCCTGCGTGCT
66 CCGGCTAGAGAGGTAGAATGCGAAAGCCGGGGATCAGCCTA-GTCCCCCCTGCGTGCT
15118515 GTCGATCCTG
Statistics
Matches: 231, Mismatches: 40, Indels: 19
0.80 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 92 0.40
158 39 0.17
159 94 0.41
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCGGCTAGAGAGGTAGAATGCGAAAGCCGGGGATCAGCCTAGTCCCCCCTGCGTGCTACCAATCC
CACTGCAGCAACCCTCAGTTAGTCTGA
Found at i:15118581 original size:26 final size:26
Alignment explanation
Indices: 15118552--15118604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15118542 CCAATCCGAT
*
15118552 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15118578 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15118604 C
1 C
15118605 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15118947 original size:26 final size:26
Alignment explanation
Indices: 15118918--15118970 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15118908 CCGATCTGAT
15118918 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15118944 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15118970 C
1 C
15118971 CTAAGCCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15119446 original size:26 final size:26
Alignment explanation
Indices: 15119417--15119467 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15119407 GGTCTGATCC
15119417 TAGACT-GGGAATGAACTCCGTATGCT
1 TAGACTGGGGAA-GAACTCCGTATGCT
15119443 TAGACTGGGGAAGAACTCCGTATGC
1 TAGACTGGGGAAGAACTCCGTATGC
15119468 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGGAAGAACTCCGTATGCT
Found at i:15119825 original size:26 final size:26
Alignment explanation
Indices: 15119796--15119847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15119786 CGGTCTGATG
15119796 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
15119822 TTAGACATGGAATGATCTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
15119848 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:15120484 original size:26 final size:26
Alignment explanation
Indices: 15120446--15120498 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15120436 GGCTCAAAAT
15120446 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTTCGCATG
*
15120472 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGCATG
15120498 C
1 C
15120499 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:15120834 original size:26 final size:26
Alignment explanation
Indices: 15120788--15120837 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15120778 CCGATTCGAT
*
15120788 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15120814 CTTAGACTGGGGATGAGCTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15120838 AGCCTCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15121248 original size:157 final size:157
Alignment explanation
Indices: 15120952--15121253 Score: 381
Period size: 157 Copynumber: 1.9 Consensus size: 157
15120942 CTACTACTGG
15120952 TCCTACTACCGCAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
1 TCCTACTACCGCAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
** * ** * * *
15121017 CAACCCAAGAAATGAGCGTGTGGGTGCTCAGCCGGCCAGAGAGGTAGAATGCGCAAGCCGGCGAC
66 CAACCCAAGAAACAAGCATCCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCAGGCGAC
15121082 CAACCCGATCCCCCTGCGTGCTATCGA
131 CAACCCGATCCCCCTGCGTGCTATCGA
* * * * *
15121109 TCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTACTACCGCAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
15121174 CAGCCCATGAAACAAGCATCCGGGCGCTGAGCTGGCCGGAGAGGCATAATGCGGAAGCTAGG-GA
66 CAACCCAAGAAACAAGCATCCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGC-AGGCGA
* * *
15121238 TCGACTCGATCCCCCT
130 CCAACCCGATCCCCCT
15121254 ATACCTTCAT
Statistics
Matches: 121, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
157 119 0.98
158 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
TCCTACTACCGCAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
CAACCCAAGAAACAAGCATCCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCAGGCGAC
CAACCCGATCCCCCTGCGTGCTATCGA
Found at i:15122140 original size:157 final size:158
Alignment explanation
Indices: 15121797--15122140 Score: 383
Period size: 157 Copynumber: 2.2 Consensus size: 158
15121787 AACTCCATAT
*** *
15121797 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGAGCATGCGGGCCCTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGG-CCTCAG
* * * * **
15121862 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGGTA
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCAATA
*
15121927 CTGCTACCACAACCCTCGGTCCAGCTGGG
130 CTGCTACCACAACCCTCGGTCCAGCTGGA
* * *
15121956 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAAGCCCACGAAACGGGCGTGCGGTG-CTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCATGCGG-GCCTCA
* * * * * *
15122019 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGTGGATTGGCTCGGTCCCCC-CTGCGTGCTTCCAAT
64 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCAAT
* * * *
15122083 GCTGCTGCCGCAACCCTCGGTCCTG-TGCGA
129 ACTGCTACCACAACCCTCGGTCCAGCTG-GA
*
15122113 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15122141 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
156 3 0.02
157 57 0.37
158 47 0.30
159 47 0.30
160 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCCTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCAATAC
TGCTACCACAACCCTCGGTCCAGCTGGA
Found at i:15122158 original size:25 final size:26
Alignment explanation
Indices: 15122114--15122165 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15122104 CCTGTGCGAT
15122114 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15122140 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15122165 C
1 C
15122166 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15122677 original size:26 final size:26
Alignment explanation
Indices: 15122627--15122679 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15122617 CCGGTTTGAT
*
15122627 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAAGTCTGTATG
15122653 CTTAGACTAGGG-ATGAACGTC-GTATG
1 CTTAGACT-GGGAATGAA-GTCTGTATG
15122679 C
1 C
15122680 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAGTCTGTATG
Found at i:15122834 original size:513 final size:511
Alignment explanation
Indices: 15121867--15122798 Score: 1178
Period size: 513 Copynumber: 1.8 Consensus size: 511
15121857 CTCTGTCGGT
* * * ** * **
15121867 CGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGGTACTGCT
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCACCTCTACAAGCTACCAGTACCACT
15121932 ACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAGCCCA
66 ACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAGCCCA
* * * * **
15121997 CGAAACGGGCGTGCGGTGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGTGGATTGGCTCGG
131 CGAAACGGACGTACGGTGCTCAACCGGCCAGAGAGGCAAAATGCGCAAGCCGTGGATCAGCTCGG
* * * *
15122062 TCCCCCCTGCGTGCTTCCAATGCTGCTGCCGCAACCCTCGGTCCTGTGCGATCTTAGACTAGGAA
196 TCCCCCCTGCGTGCTTCCAATCCTGCTACCGCAACCCTCGATCCGGTGCGATCTTAGACTAGGAA
15122127 TGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
261 TGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
* * ** * * *
15122192 TGGGCACTCAGTCGACCGAAGAGGCCAGCCGGAGAGGCATAATGCGTAAGTCAGGGTTCGACCCG
326 CGGGCACACAACCGACCGAAGAGGCCAGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAACCCG
* * * * *
15122257 ATACCTCCCTACGTGCTATCGATCCTGCTGTCACAACCCTTGGTCCGATCTGATCCTAGACTGGG
391 ATACCTCCCTACGTGCTACCAATCCCGC-GTCACAACCCTTGGCCCAATCTGATCC-AGACTGGG
15122322 AATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGTGTTCGGGTGCTGAGCCGAC
454 AATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGTGTTCGGGTGCTGAGCCGAC
* * *
15122380 CGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGATCCATCTCTACAAGCTACCAGT-CCACT
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCACCTCTACAAGCTACCAGTACCACT
*
15122444 ACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCC
66 ACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAAGCCC
* * * *
15122508 ACGAAATGGACGTACGGGTGCTCAATCGGTCGGAGAGGCAAAATGCGCAAGCCG-GAGATCAGCT
130 ACGAAACGGACGTAC-GGTGCTCAACCGGCCAGAGAGGCAAAATGCGCAAGCCGTG-GATCAGCT
* * * ** ** *
15122572 CGGTCCCCCGTGCGTGCTGT-CGATCCTGCTATCGCAATGCTCGATCCGGTTTGATCTTAGACTG
193 CGGTCCCCCCTGCGTGCT-TCCAATCCTGCTACCGCAACCCTCGATCCGGTGCGATCTTAGACTA
* * *
15122636 GGAATGAATTCTGTATGCTTAGACTAGGGATGAACGT-CGTATGCCTAAGTCAACCCATGAAACG
257 GGAATGAACTCCGTATGCTTAGACT-GGGATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * *
15122700 TGCGTACGGGCGCACAACCGGCC-AGAGAGGCCGGCCGGAGGGGTATAATGTGCAAGTCGGGGAT
320 AGCGTACGGGCACACAACCGACCGA-AGAGGCCAGCCGGAGAGGCATAATGCGCAAGTCAGGGAT
* *
15122764 CAACCTGAT-CC-CCATCTGCGTGCTACCAATCCCGC
384 CAACCCGATACCTCC--CTACGTGCTACCAATCCCGC
15122799 TACCGGTGTT
Statistics
Matches: 353, Mismatches: 57, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
512 77 0.22
513 168 0.48
514 107 0.30
515 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (511 bp):
CGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCACCTCTACAAGCTACCAGTACCACT
ACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAGCCCA
CGAAACGGACGTACGGTGCTCAACCGGCCAGAGAGGCAAAATGCGCAAGCCGTGGATCAGCTCGG
TCCCCCCTGCGTGCTTCCAATCCTGCTACCGCAACCCTCGATCCGGTGCGATCTTAGACTAGGAA
TGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
CGGGCACACAACCGACCGAAGAGGCCAGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAACCCG
ATACCTCCCTACGTGCTACCAATCCCGCGTCACAACCCTTGGCCCAATCTGATCCAGACTGGGAA
TGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGTGTTCGGGTGCTGAGCCGAC
Found at i:15124056 original size:26 final size:26
Alignment explanation
Indices: 15124018--15124070 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15124008 GGCTCAAACT
15124018 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15124044 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15124070 C
1 C
15124071 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15125456 original size:26 final size:26
Alignment explanation
Indices: 15125419--15125469 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15125409 TGGTTCGATC
15125419 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
15125445 TTAGACAT-GGAATGAACTCTGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
15125470 CCTAAGCCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:15126841 original size:26 final size:26
Alignment explanation
Indices: 15126790--15126842 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15126780 CTGGTCCAAT
*
15126790 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15126816 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCATATG
15126842 C
1 C
15126843 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15127550 original size:26 final size:26
Alignment explanation
Indices: 15127512--15127564 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15127502 GGCTCAAACT
*
15127512 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15127538 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15127564 C
1 C
15127565 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15128226 original size:157 final size:158
Alignment explanation
Indices: 15127538--15128510 Score: 881
Period size: 158 Copynumber: 6.2 Consensus size: 158
15127528 ACTCTGTATG
* * * *
15127538 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGTGTGCCCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *** *
15127602 CTGGTCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCTGATCCCCCCTGCGTGCTATTGATCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
*
15127667 TGCTGTCACAACCCTCGGTCTGGTCTGAT
130 TGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * ** * *
15127696 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCATGTAGGTGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
15127761 TGGCCAAAGAGGCATAATGCGTAAGCCAGGGATTGGCCCGATCCCCCTTTGCGTGCTGCCGGTCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGATCC
* **
15127826 TGCTGCCACAACCCTCAGT-TCGG-CTGGG
130 TGCTGCCACAACCCTCGGTCT-GGTCTGAT
* * * * * *
15127854 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * **
15127918 CTGGTCGGAAAGGCAGAATACGTAAGCCAGGGATCGG-CCTAGTCCCTCTTGCGTGCTATCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCCTGCGTGCTGCCGATC
* * * * ** *
15127982 ATGCTGTCGCAACCCTCGATCCAGTCCGAT
129 CTGCTGCCACAACCCTCGGTCTGGTCTGAT
15128012 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
15128077 CGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCGTACGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
* * * *
15128142 GCTACCGCAACCCTCAGTCTGGTC-AAT
131 GCTGCCACAACCCTCGGTCTGGTCTGAT
* * ** * * *
15128169 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
15128234 CGGCTGGAGAGGCATAAT-CGCAAGCC-GGTGATCGACCCGATCCCCCTCTGCGT-CTGCCGGTC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAGG-GATCGGCCCGATCCCCC-CTGCGTGCTGCCGATC
* *
15128296 CCGTTGCCACAACCCTCGGTCTGG-CTGGCA-
129 CTGCTGCCACAACCCTCGGTCTGGTCT-G-AT
* * * * * *
15128326 ATTAGACAT-GGAATGAACTCCCTTTGCCTAAGCCAACCCCCGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
15128390 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCTCGGTCCCTCCTACGTGCTGCCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
* *
15128455 TGCTGTCGCAACCCTCGGTCTGGTCTGAT
130 TGCTGCCACAACCCTCGGTCTGGTCTGAT
*
15128484 CTTAGACTGGGAATGAACTCCTTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15128511 TTAGACTGGG
Statistics
Matches: 653, Mismatches: 141, Indels: 42
0.78 0.17 0.05
Matches are distributed among these distances:
155 3 0.00
156 50 0.08
157 187 0.29
158 374 0.57
159 39 0.06
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGGTCTGGTCTGAT
Found at i:15128470 original size:472 final size:474
Alignment explanation
Indices: 15127538--15128510 Score: 1217
Period size: 472 Copynumber: 2.1 Consensus size: 474
15127528 ACTCTGTATG
* * *
15127538 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGTGTGCCCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
* * * * * * * * *
15127602 CTGGTCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCTGATCCCCCCTGCGTGCTATTGATCT
65 CCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
** * *
15127667 TGCTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
130 TGCTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
* * ** * * * *
15127732 CCCACGAAACGAGCATGTAGGTGCTAAGCTGGCCAAAGAGGCATAATGCGTAAGCCAGGGATTGG
195 CCCACAAAACGAGCATGCAGGCACTAAGCCGGCCAAAGAGGCATAATGCGCAAGCCAGGGATCGA
* **
15127797 CCCGATCCCCCTTTGCGTGCTGCCGGTCTTGCTGCCACAACCCTCAGTTCGGCTGGGCTTAGACA
260 CCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTTCGGCTGGGCTTAGACA
* *
15127862 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGTGCTCAACTGGTCGGA
325 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAACCGGTCGGA
** * * *
15127927 AAGGCAGAATACGTAAGCCAGGGATCGGCCTAGTCCCTCTTGCGTGCTATCGATCATGCTGTCGC
390 AAGGCAGAATACACAAGCCAGGGATCGGCCTAGTCCCTCCTACGTGCTACCGATCATGCTGTCGC
15127992 AACCCTCGATCCAGTCCGAT
455 AACCCTCGATCCAGTCCGAT
*
15128012 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAGC
* * *
15128077 CGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCGTACGTGCTGTCGATCCT
66 CGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCT
* *
15128142 GCTACCGCAACCCTCAGTCTGGTC-AATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAA
131 GCTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTTC-GTATGCATAAGTCAA
* * * * * ***
15128205 CCCATAAAATGAGCGTGCGGGCACTGAGCCGGCTGGAGAGGCATAAT-CGCAAGCC-GGTGATCG
195 CCCACAAAACGAGCATGCAGGCACTAAGCCGGCCAAAGAGGCATAATGCGCAAGCCAGG-GATCG
* *
15128268 ACCCGATCCCCCTCTGCGT-CTGCCGGTCCCGTTGCCACAACCCTC-GGTCTGGCT-GGCAATTA
259 ACCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTTC-GGCTGGGC--TTA
* * * *
15128330 GACATGGAATGAACTCCCTTTGCCTAAGCCAACCCCCGAAATGGGCGTGCGGGCGCTCAGCCGGT
321 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAACCGGT
* * * * * * * *
15128395 CGGAGAGGCAGAATGCACAAGTCGGGGATTGG-CTCGGTCCCTCCTACGTGCTGCCGATCCTGCT
386 CGGAAAGGCAGAATACACAAGCCAGGGATCGGCCT-AGTCCCTCCTACGTGCTACCGATCATGCT
* ** *
15128459 GTCGCAACCCTCGGTCTGGTCTGAT
450 GTCGCAACCCTCGATCCAGTCCGAT
*
15128484 CTTAGACTGGGAATGAACTCCTTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15128511 TTAGACTGGG
Statistics
Matches: 425, Mismatches: 67, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
470 6 0.01
471 31 0.07
472 187 0.44
473 69 0.16
474 132 0.31
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (474 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAGC
CGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCT
GCTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAAC
CCACAAAACGAGCATGCAGGCACTAAGCCGGCCAAAGAGGCATAATGCGCAAGCCAGGGATCGAC
CCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTTCGGCTGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAACCGGTCGGAA
AGGCAGAATACACAAGCCAGGGATCGGCCTAGTCCCTCCTACGTGCTACCGATCATGCTGTCGCA
ACCCTCGATCCAGTCCGAT
Found at i:15128520 original size:26 final size:26
Alignment explanation
Indices: 15128484--15128536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15128474 CTGGTCTGAT
*
15128484 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15128510 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15128536 C
1 C
15128537 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15129537 original size:159 final size:159
Alignment explanation
Indices: 15129235--15129736 Score: 537
Period size: 159 Copynumber: 3.2 Consensus size: 159
15129225 ACTCCGTATG
* ** *
15129235 CTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * * * * *
15129300 CTGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCTGGTCCCCTTCAGCGTGCTGTCGGTCC
66 CGGCCGAAGAGGCAAAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
** **
15129365 TGCTATCGTAACCCTCGGTCCAGTCTGAT
131 TGCTGCCACAACCCTCGGTCCAGTCTGAT
* * ** *
15129394 CTTAGAC-TGGGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTACTGAA
1 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * ** *
15129458 CCGGCCGAAGAGGCATAACGCGTAAGCCAAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
65 CCGGCCGAAGAGGCAAAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * * * **
15129523 CCGCTGCCACAACCCTTGGT-CTGGCTGGGG
130 CTGCTGCCACAACCCTCGGTCCAGTCT-GAT
* * * *
15129553 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAAC
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * *
15129618 CGGCCAAAAAGGCAAAATGAGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCC
66 CGGCCGAAGAGGCAAAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
*
15129682 TGCTGCCACAACCCTCGGTCCGGTCTGAT
131 TGCTGCCACAACCCTCGGTCCAGTCTGAT
*
15129711 -TTAGAC-TGCGAATAAACTTCGTATGC
1 CTTAGACATG-GAATAAACTCCGTATGC
15129737 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 62, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
156 2 0.01
157 20 0.07
158 38 0.14
159 215 0.78
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGAAGAGGCAAAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCAGTCTGAT
Found at i:15129754 original size:26 final size:26
Alignment explanation
Indices: 15129711--15129762 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15129701 CCGGTCTGAT
*
15129711 TTAGACTGCGAATAAACTTCGTATGC
1 TTAGACTGCGAATAAACTCCGTATGC
* * *
15129737 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGCGAATAAACTCCGTATGC
15129763 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGCGAATAAACTCCGTATGC
Found at i:15130103 original size:26 final size:26
Alignment explanation
Indices: 15130065--15130117 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15130055 CAGGTCCAAT
*
15130065 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
15130091 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
15130117 C
1 C
15130118 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:15130228 original size:355 final size:354
Alignment explanation
Indices: 15129525--15130189 Score: 920
Period size: 355 Copynumber: 1.9 Consensus size: 354
15129515 TGCCGATCCC
* *
15129525 GCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
** * **
15129590 CCATGAAACGGGTGTGCGGGCGCTCAACCGGCCAAAAAGGCAAAATGAGCAAGCCGGGGATCGGC
66 CCATGAAACCAGCGTGCGGGCGCTCAACCGGCCAAAAAGGCAAAATGAGCAAGCCGGGGATCAAC
* * * **
15129655 CCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATTTAGACTGC
131 CCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGATCAGGTCCAATTTAGACTGC
* * * * * *
15129720 GAATAAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTATGAAATGAG
196 GAATAAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
15129785 CGTGCTGGTGCTCAGCCAGCCCGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTC
261 CGTGCGGGTGCTCAACCAGCCCGAAAGGCAGAATACGCAAGCCGGGGACCAGCCCGATCCCTCTC
15129850 AACATGCTGTCGATCCCGCTACTGGTCCT
326 AACATGCTGTCGATCCCGCTACTGGTCCT
*
15129879 GCTGCCACAACCCTTGGTCCGG-TTGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 GCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * ** * * *
15129943 CCATGAAACCAGCGTGCGGGTGCTCAACTGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAAC
66 CCATGAAACCAGCGTGCGGGCGCTCAACCGGCCAAAAAGGCAAAATGAGCAAGCCGGGGATCAAC
* **
15130008 CCGGCTCCCCCCTGCGTGCTACCGATCTTGCTGCTGCAACCCTCGATCAGGTCCAATCTTAGACT
131 CCGG-TCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGATCAGGTCCAAT-TTAGACT
* * *
15130073 GGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACACCGTATGCCTAAGTTAACCCACGAAAC
194 GCGAATAAACTCCGTATGCTTAGAC-TGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAAC
* *
15130137 GAGCGTGCGGGTGCTCAACCAGCCGGAAAGGTAGAATACGCAAGCCGGGGACC
258 GAGCGTGCGGGTGCTCAACCAGCCCGAAAGGCAGAATACGCAAGCCGGGGACC
15130190 GACCTGGTTC
Statistics
Matches: 267, Mismatches: 41, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
353 96 0.36
354 65 0.24
355 105 0.39
356 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (354 bp):
GCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCATGAAACCAGCGTGCGGGCGCTCAACCGGCCAAAAAGGCAAAATGAGCAAGCCGGGGATCAAC
CCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGATCAGGTCCAATTTAGACTGC
GAATAAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGTGCTCAACCAGCCCGAAAGGCAGAATACGCAAGCCGGGGACCAGCCCGATCCCTCTC
AACATGCTGTCGATCCCGCTACTGGTCCT
Found at i:15130232 original size:185 final size:185
Alignment explanation
Indices: 15129905--15130276 Score: 487
Period size: 185 Copynumber: 2.0 Consensus size: 185
15129895 GTCCGGTTGG
* *
15129905 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACCAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCACGAAACCAGCGTGCGGGTGCTCAA
** * * ** *
15129970 CTGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACCCGGCTCCCCCCTGCGTGCTACCGATC
66 CCAGCCGGAAAGGCAGAATACGCAAGCCGGGGACCAACCCGGCTCCCCCCTGCGTGCTACCGATC
* *
15130035 TTGCTGCTGCAACCCTC-GATCAGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
131 CTGCTACTGCAACCCTCAG-TCAGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* ** *
15130090 GCTTAGACATGGAATGAACACCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCACGAAACCAGCGTGCGGGTGCTCAA
* * * * **
15130155 CCAGCCGGAAAGGTAGAATACGCAAGCCGGGGACCGACCTGGTTCCCCCAC-GCGTGCTGTCGAT
66 CCAGCCGGAAAGGCAGAATACGCAAGCCGGGGACCAACCCGGCTCCCCC-CTGCGTGCTACCGAT
* ** *
15130219 CCTGCTACTGCAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAT
130 CCTGCTACTGCAACCCTCAGTCAGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
15130275 GC
1 GC
15130277 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
185 158 0.99
186 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCACGAAACCAGCGTGCGGGTGCTCAA
CCAGCCGGAAAGGCAGAATACGCAAGCCGGGGACCAACCCGGCTCCCCCCTGCGTGCTACCGATC
CTGCTACTGCAACCCTCAGTCAGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15130582 original size:157 final size:157
Alignment explanation
Indices: 15130100--15130584 Score: 390
Period size: 159 Copynumber: 3.1 Consensus size: 157
15130090 GCTTAGACAT
* * ** * * ** * * * *
15130100 GGAATGAACACCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAACCAGCCGGAA
1 GGAATGAACTCCCTATGCCTAAGCCAACACAGGAAACGAGCGAACGGGCGCTCAGCCAGCAGGAG
* * * * *
15130165 AGGTAGAATACGCAAGCCGGGGACCGACCTGGTTCCCCCAC-GCGTGCTGTCGATCCTGCTACTG
66 AGGCAGAATGCACAAGCCGGGGATCGGCCTGG-TCCCCC-CTGCGTGCTGTCGATCCTGCTAC-G
*
15130229 CAACCCTCAGTCCGGTCTGATCTTAGATTG
128 CAACCCTCAGTCCGGTCCGATCTTAGATTG
* * * *
15130259 GGAATGAACTCCGTATGCCTAAGTCAACACAGGAAACGAGCGAACGGGCGCTGAGCCAGTAGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACACAGGAAACGAGCGAACGGGCGCTCAGCCAGCAGGAG
* ** * * * ** * *
15130324 AGGCATAATGCGTAAGTCGAGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGGTCCTGCTAC-CA
66 AGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGATCCTGCTACGCA
* ** *
15130388 CTACCCTCAGTCCGG-CTGGGGCTTAGACAT-
130 --ACCCTCAGTCCGGTC-CGATCTTAGA-TTG
* * * ** *
15130418 AGAATGAACTCCCTATGCCTAAGCCAACTC-GTGAAACGGGCGTGCGGGCGCTCAGCCGGCCAGG
1 GGAATGAACTCCCTATGCCTAAGCCAACACAG-GAAACGAGCGAACGGGCGCTCAGCCAG-CAGG
* * * * *
15130482 -G-GGTAGATTGCACAAGCCGGGGATCGGCCTGGTGCCCCCTGCATGCTGTCGATCCTGCTGTCG
64 AGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCT-ACG
*
15130545 CAACCCTCAGTCCGGTCCAATCTTAGATTG
128 CAACCCTCAGTCCGGTCCGATCTTAGATTG
15130575 GGAATGAACT
1 GGAATGAACT
15130585 ATGTATGCTT
Statistics
Matches: 254, Mismatches: 61, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 48 0.19
158 37 0.15
159 164 0.65
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCCTATGCCTAAGCCAACACAGGAAACGAGCGAACGGGCGCTCAGCCAGCAGGAG
AGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTACGCAA
CCCTCAGTCCGGTCCGATCTTAGATTG
Found at i:15130616 original size:26 final size:26
Alignment explanation
Indices: 15130566--15130618 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15130556 CCGGTCCAAT
* *
15130566 CTTAGATTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
15130592 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15130618 C
1 C
15130619 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15131329 original size:26 final size:26
Alignment explanation
Indices: 15131288--15131340 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15131278 GGCTCAAACT
15131288 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15131314 CTTAGACATGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15131340 C
1 C
15131341 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15131652 original size:26 final size:26
Alignment explanation
Indices: 15131623--15131675 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15131613 CTGATCCGAT
15131623 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15131649 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15131675 C
1 C
15131676 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15132479 original size:26 final size:26
Alignment explanation
Indices: 15132441--15132493 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15132431 GGCTCAAACT
15132441 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15132467 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15132493 C
1 C
15132494 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15132820 original size:26 final size:26
Alignment explanation
Indices: 15132784--15132836 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15132774 CTAGTCTGAT
15132784 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTAT-GTATG
*
15132810 CTTAGACTGGGGATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
15132836 C
1 C
15132837 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Done.