Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 93 of 138
Found at i:15133863 original size:26 final size:26
Alignment explanation
Indices: 15133823--15133875 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15133813 GGCTCAAACT
*
15133823 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGTAATGAACTACGTATG
15133849 CTTAGACATGG-AATGAACTACGTATG
1 CTTAGAC-TGGTAATGAACTACGTATG
15133875 C
1 C
15133876 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTACGTATG
Found at i:15134399 original size:26 final size:26
Alignment explanation
Indices: 15134361--15134413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15134351 TTGGTCTGAT
15134361 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15134387 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15134413 C
1 C
15134414 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15135388 original size:159 final size:158
Alignment explanation
Indices: 15134956--15135497 Score: 472
Period size: 159 Copynumber: 3.4 Consensus size: 158
15134946 TACCGATCCC
* *
15134956 GCTGTCGGTCCTGCTGCCACAACCCTCGATCCAGCTGGGCCTTAGACATGGAATGAACTCCATAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG-CTTAGACATGGAATGAACTCCATAT
* * * ** * ** * *
15135021 GCCGAAGCCAA-CCACGAAACGAGCATGCGGGTGCTCAGCCAATCGGAGAGGCAAAATGCGTAAG
65 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGCAAAATGCGCAAC
* * **
15135085 CCAGGGACCGCCCTGGTCCCCCTTTGTGT
130 CCAGGGACAGCCCTGATCCCCCTTTGCAT
* * * * ** * **
15135114 GCTGTCGATCCTGCTGCCGCAAGCCTCGGTCCAGTCTGATCTTAGACAAGGAATGAACTCTGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCC-GGCTGGGCTTAGACATGGAATGAACTCCATAT
* * * * * *
15135179 GCCTAAGTCAACCCATGGAATGAGCGTGCGGGCACT-AAGCCGGCCGGAGAGGCATAATGTGCAA
65 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA-CCGGTCGGAGAGGCAAAATGCGCAA
15135243 CCC-GAGGATCAG-CCTGAT-CCCCTTCTGCAT
129 CCCAG-GGA-CAGCCCTGATCCCCCTT-TGCAT
* * * *
15135273 GCTGTCGGTCCCGCTACCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTCCATAT
* * * * **
15135338 GCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGTCAGAGAGGTAGAATGCGCAGG
65 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGCAAAATGCGCAAC
* * *
15135403 CCAGGGATC-GACCCAG-TCCCCC-CTGCGT
130 CCAGGGA-CAG-CCCTGATCCCCCTTTGCAT
* * * * **
15135431 GCTTTCGGTCCTACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCCATA
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGG-CTGGGCTTAGACAT-GGAATGAACTCCATA
15135495 TGC
64 TGC
15135498 TTAGACTGGG
Statistics
Matches: 303, Mismatches: 67, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 127 0.42
159 163 0.54
160 12 0.04
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGCTTAGACATGGAATGAACTCCATATG
CCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGCAAAATGCGCAACC
CAGGGACAGCCCTGATCCCCCTTTGCAT
Found at i:15135507 original size:26 final size:26
Alignment explanation
Indices: 15135471--15135523 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15135461 CCGGTCTGAT
15135471 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15135497 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15135523 C
1 C
15135524 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15135549 original size:609 final size:609
Alignment explanation
Indices: 15134387--15135551 Score: 1611
Period size: 609 Copynumber: 1.9 Consensus size: 609
15134377 ACTCCGTATG
* * * *
15134387 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAATTCACGAAACAAGCATGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCGAAGCCAATCCACGAAACAAGCATGCGAGCGCTCAGC
** * * *
15134452 CGGTCGGAGATGCAAAATGCATAAGCCGGGGACCGACCCGGTCCCCCTTGCATGCTATCGATCTT
66 CAATCGGAGAGGCAAAATGCATAAGCCAGGGACCGACCCGGTCCCCCTTGCATGCTATCGATCCT
* **
15134517 GCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAAC
131 GCTGCCGCAACCCTCGGTCAGATCTGATCTTAGACAAGGAATGAACTTCGTATCCCTAAGTCAAC
* * * * * *
15134582 CCACGAAATGAGCGTTCAGGCGCTGAGGCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGC
196 CCACGAAATGAGCGTGCAGGCACTAAGCCGGCCGGAGAGGCATAATGCGCAACCCGAGGATCAGC
* * * *
15134647 CCGGTCCCCCTCTGCGTGCTGTCGGCCCCGCTACCACAACCCTCGATCCAGTTGGGGCTTAGACA
261 CCGATCCCCCTCTGCATGCTGTCGGCCCCGCTACCACAACCCTCGATCCAGCTAGGGCTTAGACA
* ** * *
15134712 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGTCGGTAAGTCGGCCGGA
326 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCACTAAGCCGGCCAGA
* * * *
15134777 GAGGCAGAATACGCAAGCCAGGGATCGGCCCGGTCCCCCCTGTATGCTGTCGATCCTGCTGTCGC
391 GAGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCTACTGTCGC
* * *
15134842 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAATCCGTATTCTTAGACTGGGGATGAACT
456 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAAATCCATATGCTTAGACTGGGGATGAACT
* * * * * *
15134907 TCGTATGCCTACGTTAACGCATAAAATGAGCGTGCGAGCTACCGATCCCGCTGTCGGTCCTGCTG
521 CCATATGCCTAAGTCAACCCATAAAACGAGCGTGCGAGCTACCGATCCCGCTGTCGGTCCTGCTG
15134972 CCACAACCCTCGATCCAGCTGGGC
586 CCACAACCCTCGATCCAGCTGGGC
* * *
15134996 CTTAGACATGGAATGAACTCCATATGCCGAAGCCAA-CCACGAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCGAAGCCAATCCACGAAACAAGCATGCGAGCGCTCAGC
* ** *
15135060 CAATCGGAGAGGCAAAATGCGTAAGCCAGGGACCG-CCCTGGTCCCCCTTTGTGTGCTGTCGATC
66 CAATCGGAGAGGCAAAATGCATAAGCCAGGGACCGACCC-GGTCCCCC-TTGCATGCTATCGATC
* *
15135124 CTGCTGCCGCAAGCCTCGGTCCAG-TCTGATCTTAGACAAGGAATGAAC-TCTGTATGCCTAAGT
129 CTGCTGCCGCAACCCTCGGT-CAGATCTGATCTTAGACAAGGAATGAACTTC-GTATCCCTAAGT
* * * *
15135187 CAACCCATGGAATGAGCGTGCGGGCACTAAGCCGGCCGGAGAGGCATAATGTGCAACCCGAGGAT
192 CAACCCACGAAATGAGCGTGCAGGCACTAAGCCGGCCGGAGAGGCATAATGCGCAACCCGAGGAT
* * * * * *
15135252 CAGCCTGATCCCCTTCTGCATGCTGTCGGTCCCGCTACCACAACCCTTGGTCCGGCTAGGGCTTA
257 CAGCCCGATCCCCCTCTGCATGCTGTCGGCCCCGCTACCACAACCCTCGATCCAGCTAGGGCTTA
*
15135317 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAA-CCGG
322 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCACT-AAGCCGG
* * * * * * *
15135381 TCAGAGAGGTAGAATGCGCAGGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTTTCGGTCCTACT
386 CCAGAGAGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCTACT
** *
15135446 GTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGAT
451 GTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAAATCCATATGCTTAGACTGGGGAT
*
15135511 GAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCG
516 GAACTCCATATGCCTAAGTCAACCCATAAAACGAGCGTGCG
15135552 GACGCTCAGT
Statistics
Matches: 480, Mismatches: 71, Indels: 10
0.86 0.13 0.02
Matches are distributed among these distances:
607 3 0.01
608 64 0.13
609 409 0.85
610 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (609 bp):
CTTAGACATGGAATGAACTCCATATGCCGAAGCCAATCCACGAAACAAGCATGCGAGCGCTCAGC
CAATCGGAGAGGCAAAATGCATAAGCCAGGGACCGACCCGGTCCCCCTTGCATGCTATCGATCCT
GCTGCCGCAACCCTCGGTCAGATCTGATCTTAGACAAGGAATGAACTTCGTATCCCTAAGTCAAC
CCACGAAATGAGCGTGCAGGCACTAAGCCGGCCGGAGAGGCATAATGCGCAACCCGAGGATCAGC
CCGATCCCCCTCTGCATGCTGTCGGCCCCGCTACCACAACCCTCGATCCAGCTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCACTAAGCCGGCCAGA
GAGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCTACTGTCGC
AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAAATCCATATGCTTAGACTGGGGATGAACT
CCATATGCCTAAGTCAACCCATAAAACGAGCGTGCGAGCTACCGATCCCGCTGTCGGTCCTGCTG
CCACAACCCTCGATCCAGCTGGGC
Found at i:15136580 original size:26 final size:26
Alignment explanation
Indices: 15136544--15136596 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15136534 CCGGTTGGAT
15136544 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
15136570 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15136596 C
1 C
15136597 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15136653 original size:13 final size:13
Alignment explanation
Indices: 15136635--15136659 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15136625 GGCACTCTGC
15136635 CGGTCGGAGAGGT
1 CGGTCGGAGAGGT
15136648 CGGTCGGAGAGG
1 CGGTCGGAGAGG
15136660 CAGAATGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.56, T:0.12
Consensus pattern (13 bp):
CGGTCGGAGAGGT
Found at i:15136782 original size:26 final size:26
Alignment explanation
Indices: 15136753--15136805 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15136743 CCAATCTGAT
15136753 CTTAGAC-TAGGAACGAACTCCATATG
1 CTTAGACAT-GGAACGAACTCCATATG
*
15136779 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAACGAACTCCATATG
15136805 C
1 C
15136806 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCATATG
Found at i:15137207 original size:159 final size:157
Alignment explanation
Indices: 15136778--15137281 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 157
15136768 AACTCCATAT
* * *
15136778 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
15136843 CCAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCATACGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGG-CCGATCCCCCC-TGCGTGCTGCCGATC
* * *
15136908 CTAGTGCTACAACCCTTGGTTCGGTCTGA
129 CTAGTGCCACAACCCTCGGTTCGGACTGA
* * ** * * * ** *
15136937 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTTCAGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * *
15137001 GCCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCCATCCCCCTCTGCGTGCTGCC-AG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GGCCGATCCCCC-CTGCGTGCTGCCGA-
* *
15137065 TCC-CGCTGCCACAACCCTCGGTTC-GACTGGG
127 TCCTAG-TGCCACAACCCTCGGTTCGGACT-GA
* *
15137096 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* ** * * * * **
15137161 CTGGTCGGAGAGGCAGAATGTACAAGCCAGGGATCGGTCGAGTCCCCCCTGCATGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCGA-TCCCCCCTGCGTGCTGCCGATCC
* * * * * * *
15137226 TACTGCTAAAACCCTCGGTCCAGTCCGA
130 TAGTGCCACAACCCTCGGTTCGGACTGA
* *
15137254 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
15137282 TTAGATTGAG
Statistics
Matches: 272, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 60 0.22
159 208 0.76
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCGATCCCCCCTGCGTGCTGCCGATCCT
AGTGCCACAACCCTCGGTTCGGACTGA
Found at i:15137284 original size:26 final size:26
Alignment explanation
Indices: 15137255--15137307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15137245 CCAGTCCGAT
15137255 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
15137281 CTTAGATTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
15137307 C
1 C
15137308 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:15138911 original size:26 final size:26
Alignment explanation
Indices: 15138861--15138913 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15138851 CTGGTTTGAT
**
15138861 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15138887 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15138913 C
1 C
15138914 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15139213 original size:195 final size:196
Alignment explanation
Indices: 15138857--15139215 Score: 411
Period size: 195 Copynumber: 1.8 Consensus size: 196
15138847 CGGTCTGGTT
** * **
15138857 TGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
15138922 ACCCATGAAACGAGCATACGGGCGCTCAGCCAACCGAAGAGGCAAAATGTGCAAGCCGAGGATCA
66 ACCCATGAAACAAGCATACGGGCACTCAGCCAACCGAAGAGGCAAAATGCGCAAGCCGAGGATCA
* **
15138987 GCTCGATCCCCCCTGTGTGCTGCCAATCCTACTGCTGGTCCTGCTATCGTAAGCCTCAATCCGGT
131 GCCCGATCCCCCCTACGTGCTGCCAATCCTACTGCTGGTCCTGCTATCGTAAGCCTCAATCCGGT
15139052 C
196 C
*
15139053 TGATCTTAGACT-GGAATGAACTCCGTATGCTTGGACAT-GGAATGAACTCCGTATGCCTAAGCC
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCC
** * * *** * * * * *
15139116 AA-CCATGAAACAAGTGTGCGGGCACTCAGTCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGA-C
65 AACCCATGAAACAAGCATACGGGCACTCAGCCAACCGAAGAGGCAAAATGCGCAAGCCGAGGATC
* * * *
15139179 AGGCCCGGTCCTGCCCTACGTGCTGTCGATCCTACTG
130 A-GCCCGATCC-CCCCTACGTGCTGCCAATCCTACTG
15139216 TCGCAACCAT
Statistics
Matches: 132, Mismatches: 28, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
193 2 0.02
194 52 0.39
195 65 0.49
196 13 0.10
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (196 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCCATGAAACAAGCATACGGGCACTCAGCCAACCGAAGAGGCAAAATGCGCAAGCCGAGGATCA
GCCCGATCCCCCCTACGTGCTGCCAATCCTACTGCTGGTCCTGCTATCGTAAGCCTCAATCCGGT
C
Found at i:15139948 original size:26 final size:26
Alignment explanation
Indices: 15139911--15139962 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15139901 CAGTCTGATA
15139911 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15139937 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
15139963 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15140487 original size:158 final size:157
Alignment explanation
Indices: 15139936--15140509 Score: 471
Period size: 159 Copynumber: 3.6 Consensus size: 157
15139926 ACTCCGTATG
* *
15139936 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCAGC
* * * * * * ** * *
15140001 CGACCGGAAAGGCAGAATACGTAAGTCGGTGATTGGTCGGATCCCCTCCTACGTGCTGTCGATCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGCCCGG-TCCCC-CTTACATGCTGTCGATCC
** * *
15140066 TGCTGTCAGAA-CCTTCGGTCCGATCCGAT
129 TGCTACCACAACCCTT-GGTCCGATCTGAT
* * * * * * * *
15140095 CATAGGC-TGGGAATGAACTCCCTATGCCTCAGTCAACCCACGAAACAAGCGTGCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
* * * * ** * * *
15140159 CTGACCGGAGAGGCATAATGCACAAGCCGGGGATTGACCCAATCCCCCTCTGCATGTTGTCGGTC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTG-CCCGGTCCCCCT-TACATGCTGTCGATC
* * *
15140224 CTGCTACCACAACCCTCGATCCGA-CTGGGGT
128 CTGCTACCACAACCCTTGGTCCGATCT--GAT
* * ** *
15140255 -TTAGACATTGAATCAACTCCCTATGCCTAAGCCAACCCAAAAAACG-GCGTTGC-TAGCACTCA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGA-CACTCA
* * * * *
15140317 ACCGA-TAGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTACATCCTATCGAT
64 GCCGACCA-GAGAGGCAGAATGCGCAAGCCGGGGAT-TGCCCGGTCCCCCTTACATGCTGTCGAT
* * *
15140381 CCTACTACCATAACCCTTGGTCTGATCTGAT
127 CCTGCTACCACAACCCTTGGTCCGATCTGAT
* * * *
15140412 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
* * *
15140476 CTGACCAGAGAGGCAGGATGCGTAAGCCGGGGAT
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGAT
15140510 CGAACGGGTG
Statistics
Matches: 320, Mismatches: 78, Indels: 35
0.74 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 109 0.34
159 200 0.62
160 8 0.03
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGCCCGGTCCCCCTTACATGCTGTCGATCCTG
CTACCACAACCCTTGGTCCGATCTGAT
Found at i:15141435 original size:159 final size:157
Alignment explanation
Indices: 15141099--15141601 Score: 366
Period size: 159 Copynumber: 3.2 Consensus size: 157
15141089 AAATTCGTAT
* * * *
15141099 GCTTAGACAT-GGAATGAACTCTG-TATGCCTAAGCCAACCCACAAAATGAGCGTTCAAGCGCTC
1 GCTTAGAC-TGGGAATGAACTC-GATATGCATAAGCCAACCCACAAAACGAGCGTACAGGCGCTC
** * *
15141162 AGCCGATCGGAA-AGGCAGAATGCGTAAGCC-AGGGATC-GATCTGATCTCCCCCAAT-GTGCTA
64 AGCCGATC-GAAGAGGCAGAATGCACAAGCCGA-GGATCAGCTC-GGTC-CCCCC--TCGTGCT-
** * ***
15141223 T-CGATCCTACTACCGCAACCCTCGGTCCGA-TCCAA
122 TCCGATCCCGCTACCACAACCCTCGGTCCGACT-GGG
* * * * *
15141258 TCTTAGACTGGGAATGAACTTC-ATATGCATAA-CTCAACCCACAAAATGAGCGTACGGGCGTTG
1 GCTTAGACTGGGAATGAAC-TCGATATGCATAAGC-CAACCCACAAAACGAGCGTACAGGCGCTC
* * * *
15141321 AGCCGGTCGAAGAGGCATAATGCACAAGCCGAGGATTAGCTCGGTCCCTCTCTACGTGCTGT-CG
64 AGCCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGGTCCC-CCCT-CGTGCT-TCCG
* * *
15141385 GTCCCGCTGCCACCACCCTCGGTCCGACTGGG
126 ATCCCGCTACCACAACCCTCGGTCCGACTGGG
* * * * * * *
15141417 GCTTAGACAT-GGACTGAACTCGCTATGCGTAAGCCAACCCACGAAACGGGTGTGCAGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCGATATGCATAAGCCAACCCACAAAACGAGCGTACAGGCGCTCA
* * **
15141481 GTCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCAGCTCGGTCCCCCCTCGTGCTTCCGATCC
65 GCCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGGTCCCCCCTCGTGCTTCCGATCC
* * * *
15141546 TGCTACCACAACCCTCGGTCC-AGTTCGA
130 CGCTACCACAACCCTCGGTCCGA-CTGGG
* * *
15141574 TCTTAGACTGGGAAAGAACTCTATATGC
1 GCTTAGACTGGGAATGAACTCGATATGC
15141602 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 57, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
156 3 0.01
157 53 0.20
158 12 0.04
159 193 0.71
160 9 0.03
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCGATATGCATAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAG
CCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGGTCCCCCCTCGTGCTTCCGATCCC
GCTACCACAACCCTCGGTCCGACTGGG
Found at i:15142334 original size:159 final size:157
Alignment explanation
Indices: 15141938--15142348 Score: 380
Period size: 159 Copynumber: 2.6 Consensus size: 157
15141928 AACTCTATAT
* *
15141938 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTC-A
* * * * * * *
15142003 TCGACCAGAGAGACAGAATGCGCAAGTCGGGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCAGCTCGATCCCCCCTACGTGCTGTCGATCC
* *
15142068 TGCTGCCGAAACCCTCGGTCCAGTCTGA
130 CGCTGCCGAAACCCTCGGTCCAGGCTGA
* * * * ** ** ** *
15142096 TCTTAGAC-TAGGAATGAACTTCATATACCTAAGTCAACCCATAAAATGAGCATGTGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCA
* * * * *
15142160 CCTGGCCGGAGAGGCATAATGCGCAAGCCCGAGGACCAGGC-CGTTCCCCTCTACGTGCTGTCGG
65 TC-GGCCGGAGAGGCAGAATGCGCAAG-CCGAGGACCA-GCTCGATCCCCCCTACGTGCTGTCGA
* * * *
15142224 TCCCGTTGCC-ACAACCCTTGGT-CTGGCTGGG
127 TCCCGCTGCCGA-AACCCTCGGTCCAGGCT-GA
* * * *
15142255 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCA-
* * *
15142320 TCGGTCGGAGAGGCAGAATGTGTAAGCCG
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCG
15142349 GGGATCGACT
Statistics
Matches: 194, Mismatches: 51, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
157 3 0.02
158 76 0.39
159 111 0.57
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAT
CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCAGCTCGATCCCCCCTACGTGCTGTCGATCCC
GCTGCCGAAACCCTCGGTCCAGGCTGA
Found at i:15142443 original size:26 final size:26
Alignment explanation
Indices: 15142414--15142466 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15142404 CCAGTCCGAT
15142414 CTTAGACT-GGGATTGAAC-TCTGTATG
1 CTTAGACTAGGGA-TGAACTTC-GTATG
15142440 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
15142466 C
1 C
15142467 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:15143533 original size:26 final size:26
Alignment explanation
Indices: 15143493--15143545 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15143483 GGCTTAAACT
*
15143493 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTACGTATG
15143519 CTTAGACATGG-AATGAACTACGTATG
1 CTTAGAC-TGGTAATGAACTACGTATG
15143545 C
1 C
15143546 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTACGTATG
Found at i:15143873 original size:26 final size:26
Alignment explanation
Indices: 15143835--15143887 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15143825 TCGATTCGAT
*
15143835 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
* *
15143861 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
15143887 C
1 C
15143888 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:15144069 original size:26 final size:26
Alignment explanation
Indices: 15144031--15144083 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15144021 TTGGTCTGAT
*
15144031 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
15144057 CTTAGAC-ATGGAATAAACTTCGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
15144083 C
1 C
15144084 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:15144561 original size:26 final size:26
Alignment explanation
Indices: 15144532--15144584 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15144522 CTGGTCCGAT
15144532 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
15144558 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
15144584 C
1 C
15144585 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:15144948 original size:159 final size:158
Alignment explanation
Indices: 15144626--15145168 Score: 425
Period size: 159 Copynumber: 3.4 Consensus size: 158
15144616 TATCGATCCC
* * * * * * * *
15144626 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCCGGACCTTACACATGGAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACAAGGAATGAACTCCATAT
* * ** * ** * *
15144691 GCCGAAGCCAACCCACGAAACGAACATG--CGGGCGCTCAGCCGGTC-GAAGAGGCAAAATGCGC
65 GCCTAAGCCAACCCATGAAAC--AGGTGTACGGGCACTCAGCCGACCAGAA-AGGCAGAATGCAC
* * *
15144753 AAGCC-AGTGA-CTGCCCTGGTCCCCCTCTGTGT
127 AACCCGAG-GATCAG-CCTGGTCCCCCTCTGCGT
* * * * *
15144785 GCTGTCGATCCTGCTGCCGTAAGCCTCAGTCCAGTCTGATCTTAGACAAGGAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACAAGGAATGAACTCCATAT
* * * * * * * * * *
15144850 GCCTAAGTCAACCCATGGAA-TGAGTGTGCGGGCATTGAGTCGGCCGGAAAGGCATAATGCACAA
65 GCCTAAGCCAACCCATGAAACAG-GTGTACGGGCACTCAGCCGACCAGAAAGGCAGAATGCACAA
* *
15144914 CCCGAGGATCAGCCTGATCCCCCTCTGCAT
129 CCCGAGGATCAGCCTGGTCCCCCTCTGCGT
* * * * * ** * * *
15144944 GCTGTCGGTCCCGCTGCCACGACCCTTGGTCCGACTGGGGCTTACACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCTGCTGCCGCAACCCTCGGTCCGTCT-GATCTTAGACAAGGAATGAACTCCATAT
* * * *
15145009 GCCTAAGCCAACCCATGAAACAGGTGTACGGGCACTCAGCCGATCAGAGAGGCAGAATGCGCAAG
65 GCCTAAGCCAACCCATGAAACAGGTGTACGGGCACTCAGCCGACCAGAAAGGCAGAATGCACAAC
* *
15145074 CCGGGGATCGGCCTGGTCCCCCT-TGCGT
130 CCGAGGATCAGCCTGGTCCCCCTCTGCGT
* * ** *
15145102 GCTGTCGGTCCTACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAGGAACTCCATAT
1 GCTGTCGGTCCTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACAAGGAATGAACTCCATAT
15145167 GC
65 GC
15145169 TTAGACTTGG
Statistics
Matches: 298, Mismatches: 77, Indels: 19
0.76 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 56 0.19
159 232 0.78
160 8 0.03
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTGTCGGTCCTGCTGCCGCAACCCTCGGTCCGTCTGATCTTAGACAAGGAATGAACTCCATATG
CCTAAGCCAACCCATGAAACAGGTGTACGGGCACTCAGCCGACCAGAAAGGCAGAATGCACAACC
CGAGGATCAGCCTGGTCCCCCTCTGCGT
Found at i:15145185 original size:26 final size:26
Alignment explanation
Indices: 15145142--15145197 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
15145132 CCGGTCTGAT
15145142 CTTAGACTGGGAAGGAACTCCATATG
1 CTTAGACTGGGAAGGAACTCCATATG
* **
15145168 CTTAGACTTGGG-ATGAACTCTGTATG
1 CTTAGAC-TGGGAAGGAACTCCATATG
15145194 CTTA
1 CTTA
15145198 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:15145792 original size:11 final size:11
Alignment explanation
Indices: 15145772--15145815 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
15145762 CGGTTAGGCT
*
15145772 CTCCGACGATG
1 CTCCGGCGATG
15145783 CTCCGGCGATG
1 CTCCGGCGATG
*
15145794 CTCTGGCGATG
1 CTCCGGCGATG
*
15145805 CTCTGGCGATG
1 CTCCGGCGATG
15145816 GTGCCCCAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.11, C:0.32, G:0.34, T:0.23
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:15146213 original size:159 final size:159
Alignment explanation
Indices: 15145911--15146322 Score: 348
Period size: 159 Copynumber: 2.6 Consensus size: 159
15145901 ACTCCGTATG
* * *
15145911 CTTAGAGATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGAGATGGAATAAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTAAGC
* ** *
15145976 CGACCGAAGAGGTAGAATGCGCAAGCCGAGGATTGGCCCAGTCCCCCCCTGTGTGCTATTGATCT
66 CGACCGAAGAGGTAGAATGCGCAAGCCGAGGATTGGCCCAGTCCCCCCCTGCGTGCTACAGATCC
** *
15146041 TGCTACCATAACCCTCGGTACGGTCCGAT
131 CACTACCACAACCCTCGGTACGGTCCGAT
* * ** *
15146070 CTTAGAG-TAGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGTTAAG
1 CTTAGAGAT-GGAATAAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTAAG
* * * * *
15146134 CTGGCCGAAGATGCGT-G-ATGCGCAAGTCGGGGATTGGCCC-GATCCCCCTCTGCGTGCTACCA
65 CCGACCGAAGA-G-GTAGAATGCGCAAGCCGAGGATTGGCCCAG-TCCCCCCCTGCGTGCTA-CA
* * * * ** **
15146196 G-TCCCACTGCCACAACCCTCTGTCCGATTGGGG
126 GATCCCACTACCACAACCCTCGGTACGGTCCGAT
* * * * * * * * * * *
15146229 CTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGCGCTCAGT
1 CTTAGAGATGGAATAAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTAAGC
* * * * *
15146294 AGGCCGGAGAGGCAGAATGCACAAGCCGA
66 CGACCGAAGAGGTAGAATGCGCAAGCCGA
15146323 AGATCGACCC
Statistics
Matches: 199, Mismatches: 46, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.01
158 4 0.02
159 188 0.94
160 4 0.02
161 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGAGATGGAATAAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTAAGC
CGACCGAAGAGGTAGAATGCGCAAGCCGAGGATTGGCCCAGTCCCCCCCTGCGTGCTACAGATCC
CACTACCACAACCCTCGGTACGGTCCGAT
Found at i:15146428 original size:26 final size:26
Alignment explanation
Indices: 15146387--15146442 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
15146377 CCGATCTGAT
**
15146387 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15146413 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15146439 CTTA
1 CTTA
15146443 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15147294 original size:158 final size:156
Alignment explanation
Indices: 15146803--15147361 Score: 497
Period size: 159 Copynumber: 3.5 Consensus size: 156
15146793 CTTAGACATA
*
15146803 GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-GACCTG-CCGGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CC-GACCGGA
* * * * *
15146866 GAGGCAGAATGTGCAAGCCGAGGACCGACCTAGTTCCCTCTACGTGTTGTCGATCCTGGTGCCAC
64 GAGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCTCTACGTGCTGTCGATCCTGCTGCCAC
** *
15146931 AACCC-TCAGTCCGGTCCAATATTAGACTGG
129 AACCCAT--GTCC-GTCTGATCTTAGACTGG
* ** * * * *
15146961 GAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCACTGAGCCTATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
* * * * * * ** *
15147026 GGCATAATGTGCAAGCCGGGGATCAACC-CGATCCCCTTTTGTGTGCTGTC-AGTCCTGCTACCA
66 GGCAGAATGCGCAAGCCGAGGATCGACCTAG-TCCCC-TCTACGTGCTGTCGA-TCCTGCTGCCA
* ** *
15147089 CAACCTTCA-GTCCGGCTAGGGCTTAAACAT-G
128 CAACC--CATGTCCGTCT-GATCTTAGAC-TGG
* * * * * *
15147120 GAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTACGGGCGCTCAGTCGACCAGG-G
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC-GGAG
* * * *
15147184 AGGCAGAATGCCCAAGCCGAGGATCGGCCTTGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACA
65 AGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCTCTACGTGCTGTCGATCCTGCTGCCACA
15147249 ACCCATGGTCCGATCTGATCTTAGACTGG
130 ACCCAT-GTCCG-TCTGATCTTAGACTGG
* * * * *
15147278 GAATGAACTCTGTATG-CTTAGACTCAACCCACGAAACGAGCGTGTGGACGCTCAGCCGACCAGA
1 GAATGAACTCCGTATGCCTAAG-C-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGA
*
15147342 GAGGCAGGATGCGCAAGCCG
64 GAGGCAGAATGCGCAAGCCG
15147362 GGGTTCGAAC
Statistics
Matches: 314, Mismatches: 67, Indels: 39
0.75 0.16 0.09
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 138 0.44
159 163 0.52
160 4 0.01
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
GGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCTCTACGTGCTGTCGATCCTGCTGCCACAA
CCCATGTCCGTCTGATCTTAGACTGG
Found at i:15148009 original size:26 final size:26
Alignment explanation
Indices: 15147958--15148010 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15147948 GGCTCAAACA
**
15147958 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15147984 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15148010 C
1 C
15148011 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15148579 original size:160 final size:157
Alignment explanation
Indices: 15148192--15148624 Score: 415
Period size: 160 Copynumber: 2.7 Consensus size: 157
15148182 GACTCCGTAT
* *
15148192 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCACTCAG
** * * * *
15148257 -TTGATCGGAGAGGTAGAATACGCAAGCCGAGGATTGGCCCGGTCCCCTCTGCATGCTGTCAATC
64 CCAG-CCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCTCTGCATGCTGCCAATC
* ** *
15148321 CTGCTGCCACAACCCTCAATCGGGTCTGAT
128 CTGCTACCACAACCCTCAATCCAGTCTGAG
* * * * * ** *
15148351 G-TTAGAC-TAGGAATGAACTCTGTATGCCTAAGACAACCCACGAAATGAGTGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTC-CTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCACTCA
* ** * * *
15148414 GCCAGCCGGAGAGGCATAATGTGCAATGCTGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCGA
63 GCCAGCCGGAGAGGCAGAATACGCAA-GCCGAGGATCGGCCCGGT-CCCCTCTGCATGCTGCCAA
* *
15148479 TCCTGCTACCACAACCCTCGATCCAG-CTGGG
126 TCCTGCTACCACAACCCTCAATCCAGTCTGAG
* * *
15148510 GCTTAGACATGGAATGAACTGCCTATGCCTAAGCTAAACCATGTAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
15148575 CCAGCCGGACAGGCAGAATACGTAAGTCAAGGATCGGCTCAGTCCCCTCT
64 CCAGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCTCT
15148625 ACAAGCTATC
Statistics
Matches: 214, Mismatches: 51, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
158 73 0.34
159 34 0.16
160 105 0.49
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
AGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCTCTGCATGCTGCCAATCCTG
CTACCACAACCCTCAATCCAGTCTGAG
Found at i:15148995 original size:343 final size:344
Alignment explanation
Indices: 15148352--15149093 Score: 818
Period size: 343 Copynumber: 2.2 Consensus size: 344
15148342 GGGTCTGATG
* * * * * *
15148352 TTAGACTAGGAATGAACTCTGTATGCCTAAGACAACCCACGAAATGAGTGTTCGGGCGTTGAGCC
1 TTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTGAGCC
* ** * * *
15148417 AGCCGGAGAGGCATAATGTGCAATGCTGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCGATCC
66 AGCCGAAGAGGCATAATACGCAATGCTGAGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCC
* ** * *
15148482 TGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCTAA
131 TGCTACCACAACCATCGATCCAGCTGGGGCACAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * ** * * *
15148547 ACCATGTAACGGGCGTGCGGGCACTCAGCCAGCCGGACAGGCAGAATACGTAAGTCAAGGATCGG
196 ACCATGAAACGGGCATGCGGGCACTCAACCAGCCAAAAAGGCAGAATACGCAAGCCAAGGATCGG
* * * * *
15148612 CTCAGTCCCCTCTACAAGCTATCGATCTTACTACCGCAACCCTCAGTCTGGT-TCGATCTTAGAC
261 CCCAGTCCCCCCTACAAGCTATCGATCCTACTACCGCAACCCTCAGTCCGATCT-GATCTTAGAC
15148676 TGGGAATGAACTCCATATGC
325 TGGGAATGAACTCCATATGC
* * * *
15148696 TTAGACTAGGGATGAACTTTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGTGTTGAGTC
1 TTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTGAGCC
* **
15148761 -GATCGAAGAGGCATAATACGCAA-G-TCGAGGATCAGCCCGATCCCCCTCTGGGTGCTGTCC-A
66 AG-CCGAAGAGGCATAATACGCAATGCT-GAGGATCAGCCCGATCCCCCTCTGCATGCTG-CCGA
* * * *
15148822 TCCCT-CTGCCACAACCATCGGT-CTGACTGGGGCACAGACATGTAATGAACTCCCTATGCCTAA
128 T-CCTGCTACCACAACCATCGATCCAG-CTGGGGCACAGACATGGAATGAACTCCCTATGCCTAA
* * **
15148885 GCCAACCCATGAAACGGGCATGCGGGCACTCAACC-GACCAAAAAGGCATAATGTGCAAGCCAAG
191 GCCAAACCATGAAACGGGCATGCGGGCACTCAACCAG-CCAAAAAGGCAGAATACGCAAGCCAAG
** * ** **
15148949 GATCGGCCC-GATCCCCCCTACGTGCTGTCGATCCTGTTGTCGCAACCCTCAGTCCGATCTGATC
255 GATCGGCCCAG-TCCCCCCTACAAGCTATCGATCCTACTACCGCAACCCTCAGTCCGATCTGATC
* *
15149013 TTAGACTGGGAATGAACTTCGTATGC
319 TTAGACTGGGAATGAACTCCATATGC
* * * * *
15149039 TTGGACTGGGGATGAACTCCGTATGCCTAAGTCAAGCCATGAAACGAGCGTGCAG
1 TTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG
15149094 ACGCTCAACC
Statistics
Matches: 329, Mismatches: 61, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
342 5 0.02
343 246 0.75
344 78 0.24
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (344 bp):
TTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTGAGCC
AGCCGAAGAGGCATAATACGCAATGCTGAGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCC
TGCTACCACAACCATCGATCCAGCTGGGGCACAGACATGGAATGAACTCCCTATGCCTAAGCCAA
ACCATGAAACGGGCATGCGGGCACTCAACCAGCCAAAAAGGCAGAATACGCAAGCCAAGGATCGG
CCCAGTCCCCCCTACAAGCTATCGATCCTACTACCGCAACCCTCAGTCCGATCTGATCTTAGACT
GGGAATGAACTCCATATGC
Found at i:15149784 original size:26 final size:26
Alignment explanation
Indices: 15149733--15149785 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15149723 GGCTCAAACT
**
15149733 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15149759 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15149785 C
1 C
15149786 CTGAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15150075 original size:26 final size:26
Alignment explanation
Indices: 15150046--15150098 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15150036 CTGGTTTGAT
*
15150046 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
*
15150072 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
15150098 C
1 C
15150099 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:15150368 original size:196 final size:196
Alignment explanation
Indices: 15150043--15150400 Score: 452
Period size: 196 Copynumber: 1.8 Consensus size: 196
15150033 GGTCTGGTTT
* * ** * * *
15150043 GATCTTAGACTGTGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAAGGAACTCCATATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * * * *
15150108 CTCGTGAAATGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGTAAGCCGAGGATCGG
66 CCCACGAAACGAACGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGTAAGCAGAGGATCGG
* * *
15150173 -TCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTGTTGT
131 CT-CGATCCCCACTGAGTGCTATCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTGTTGT
15150237 CC
195 CC
* *
15150239 GATCTTAGATTGGGAAGGAACTCCATATGCTTAGACGTG-GAATGAATTCCGTATGCCTAAGCCA
1 GATCTTAGACTGGGAAGGAACTCCATATGCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCA
* *
15150303 ACCCACGAAACGAACGTGCGGGTGCTCAACTGACCGGAGAGGCAGAATGCGTAAGTCAG-GGATC
65 ACCCACGAAACGAACGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGTAAG-CAGAGGATC
*
15150367 GGCTCGATCCCCACTGAGTGCTATCGATCTTGCT
129 GGCTCGATCCCCACTGAGTGCTATCGATCCTGCT
15150401 GCCACAACCC
Statistics
Matches: 135, Mismatches: 24, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
196 130 0.96
197 5 0.04
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (196 bp):
GATCTTAGACTGGGAAGGAACTCCATATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAACGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGTAAGCAGAGGATCGG
CTCGATCCCCACTGAGTGCTATCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTGTTGTC
C
Found at i:15150793 original size:26 final size:26
Alignment explanation
Indices: 15150742--15150794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15150732 TCGATCCAAT
*
15150742 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
15150768 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACATATG
15150794 C
1 C
15150795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:15151147 original size:26 final size:26
Alignment explanation
Indices: 15151109--15151161 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15151099 CTTGTCTGAT
*
15151109 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15151135 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15151161 C
1 C
15151162 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15151637 original size:26 final size:26
Alignment explanation
Indices: 15151601--15151653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15151591 CAGGTTTGAT
*
15151601 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTCTATG
*
15151627 CTTAGACTGGGGATGAACTCTCTATG
1 CTTAGACTGGGAATGAACTCTCTATG
15151653 C
1 C
15151654 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTCTATG
Found at i:15151826 original size:26 final size:26
Alignment explanation
Indices: 15151797--15151847 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15151787 CCGATCCAAT
15151797 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
15151823 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
15151848 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15151871 original size:859 final size:863
Alignment explanation
Indices: 15150143--15151823 Score: 1831
Period size: 859 Copynumber: 1.9 Consensus size: 863
15150133 CAGCCGACCG
* * ** *
15150143 GAGAGGCAGAATGTGTAAGCCGAGGATCGGTCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACT
1 GAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAACCCCCCTGCGTGCTGTCGATCCTGCTACT
* * *
15150208 GGTCCTGCTACCGCAACCCTCGGTGTTGTCCGATCTTAGATTGGGAAGGAACTCCATATGCTTAG
66 GGTCCTGCTAACGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAAGGAACTCCATATGCTTAG
* * * * *
15150273 ACGTGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAACTGACC
131 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACGTGCGGGCGCTCAACTGACC
* * * *
15150338 GGAGAGGCAGAATGCGTAAGTCAGGGATCGGCTCGATCCCCACTGAGTGCTATCGATCTTGCTGC
196 GGAGAGGCAGAATACGTAAGTCA-GGA-C-GCTCGATCCCCACTCAGTCCTATCGATCCTGCTGC
* *
15150403 CACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACA
258 CACAACACTCGGTCTGGCCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACA
** * * * * * ** *
15150468 AAATGAGCGTTCGGATGCTGAGCCGGTCGAAGAGGCATAATGCGTAAGCCGAGGATCGACTCAGT
323 AAACAAGCGTGCGGACGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGT
*
15150533 CCCCCTCTACGTTTGTCGGTCCCGCTGCCACTACCCTCGGTCCGACTGGGGCTTAAGCATGGAAT
388 CCCCCTCTACGTTTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAAGCATGGAAT
**** ** *
15150598 GAACTCCCTATGCCTAAGCCAACCCGTAAAATGGGTATGTGGGTGCTCAGTCGACCGGAGAGGCA
453 GAACTCCCTATGCCTAAGCCAACCCG-AAAATGGGTATACAAGTGCTCAACCGACCGGAGAGACA
* * * * * * *
15150663 GAATGCGCAAGTCAGAGATCGGTCCGGTCTCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCT
517 GAATACACAAGCCAGAGATCGGACCAGTCTCCTCTGCGTGCTACCAATCCTGCTACCACAACCCT
* *
15150728 CGATTCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTACGTAT
582 CGAGTCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTACCTAT
* * *
15150793 GCCTAAGTCAACCCATGAAACGAGCATACGAGCGCTCAGCCAGTCAGAGAGGCATAATGCATAAG
647 GCCTAAGCCAACCCATGAAACGAGCATACGAGCGCTCAGCCAGTCAGAAAGGCAAAATGCATAAG
* ** * * *
15150858 CCGAGGATCAGCCCAATCCCCCTCTGTGTGCTACCGATCCCGTTGCCAGTCCTGCTGCCACAACC
712 CAGAGGATCAGCCCAATCCCCCTCTACGTCCCACCGATCCCGCTGCCAGTCCTGCTGCCACAACC
* * * *
15150923 CTCGGTCCGGCTAAGGCTTAGACATGGAATGAACTCCGTCTGCCTAAGCCAACCCCACGAAACGA
777 CTCGGTCCGGCCAAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCAACGAAACGA
* ** *
15150988 GCATGTGGGCACTCAACCAATC
842 ACATGAAGCCACTCAACCAATC
* *
15151010 GAGAGGCAGAATGCGCAAGCC-AGGGATCGACCCGAACCCCCCTGTGTGCTGTCGATCTTGCT-C
1 GAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGAACCCCCCTGCGTGCTGTCGATCCTGCTAC
* * *
15151073 TTGGTCCTGCTAACGCAACCCTCGGTCTTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
65 -TGGTCCTGCTAACGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAAGGAACTCCATATGCTT
* * * *
15151138 AGACATGGAATGAACTCCATATGCCTAAGGCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGG
129 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACGTGCGGGCGCTCAACTGA
* * * * * * *
15151203 TCGGAGAGGTAGAATACGTAAGTC-GG-C-C-GGA-CCCCCCTCCGTCCTGTCGATCCTGCTGTC
194 CCGGAGAGGCAGAATACGTAAGTCAGGACGCTCGATCCCCACTCAGTCCTATCGATCCTGCTGCC
* * * * **
15151263 GCAACACTTGGTCTGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
259 ACAACACTCGGTCTGGCCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAA
* * * * *
15151328 AACAAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAG-CGGGGATCGGCCCGGTC
324 AACAAGCGTGCGGACGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTC
* * * *** *
15151392 CTCCTCTATGTGTTGTCGGT-CTGACTGCCACAACCCTTTTTCCTACTGGGGCTT-AGACATGGA
389 CCCCTCTACGT-TTGTCGGTCCCG-CTGCCACAACCCTCGGTCCGACTGGGGCTTAAG-CATGGA
* **
15151455 ATGAACTCCCTATGCCTAAGCCAAGCCACG-AAATGGGTGTACAAGTGCTCAACCGGTCGGAGAG
451 ATGAACTCCCTATGCCTAAGCCAA-CC-CGAAAATGGGTATACAAGTGCTCAACCGACCGGAGAG
* * *
15151519 ACAGAATACACAAGCC-GAGGATC-GACCTAGTCTACC-CTGTGTGCTACCGATCCTGCTGCCAC
514 ACAGAATACACAAGCCAGA-GATCGGACC-AGTCT-CCTCTGCGTGCTACCAATCCTGCTACCAC
* * *** ** *
15151581 AATCCTCG-GTCAGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
576 AACCCTCGAGTC-GATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAAC
* * * ** * * *
15151645 T-CTCTATGCCTAAGCCAACTCATGAAATGAGCGTGTGGGCGCTCAGTC-GATCGGAAAGGCAAA
640 TAC-CTATGCCTAAGCCAACCCATGAAACGAGCATACGAGCGCTCAGCCAG-TCAGAAAGGCAAA
* * * * ** **
15151708 ATGCATAAGTTAG-GGATC-GACCCGATCCCTC-CTACGTCCCATCGATCTTGCTGCTGGTCCTG
703 ATGCATAAG-CAGAGGATCAG-CCCAATCCCCCTCTACGTCCCACCGATCCCGCTGCCAGTCCTG
* ** * *
15151770 CTGTCGTAACCCTCGGTCCGATCCAA-TCTTAGAC-TGAGAATGAACTCCGTATGC
766 CTGCCACAACCCTCGGTCCG-GCCAAGGCTTAGACATG-GAATGAACTCCGTATGC
15151824 TTAGACATGG
Statistics
Matches: 671, Mismatches: 126, Indels: 43
0.80 0.15 0.05
Matches are distributed among these distances:
857 2 0.00
858 97 0.14
859 369 0.55
860 7 0.01
861 3 0.00
863 1 0.00
865 2 0.00
866 2 0.00
867 188 0.28
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (863 bp):
GAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAACCCCCCTGCGTGCTGTCGATCCTGCTACT
GGTCCTGCTAACGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAAGGAACTCCATATGCTTAG
ACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAACGTGCGGGCGCTCAACTGACC
GGAGAGGCAGAATACGTAAGTCAGGACGCTCGATCCCCACTCAGTCCTATCGATCCTGCTGCCAC
AACACTCGGTCTGGCCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAA
CAAGCGTGCGGACGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCC
CCTCTACGTTTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAAGCATGGAATGAA
CTCCCTATGCCTAAGCCAACCCGAAAATGGGTATACAAGTGCTCAACCGACCGGAGAGACAGAAT
ACACAAGCCAGAGATCGGACCAGTCTCCTCTGCGTGCTACCAATCCTGCTACCACAACCCTCGAG
TCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTACCTATGCCT
AAGCCAACCCATGAAACGAGCATACGAGCGCTCAGCCAGTCAGAAAGGCAAAATGCATAAGCAGA
GGATCAGCCCAATCCCCCTCTACGTCCCACCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCG
GTCCGGCCAAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCAACGAAACGAACAT
GAAGCCACTCAACCAATC
Found at i:15152076 original size:158 final size:160
Alignment explanation
Indices: 15151822--15152181 Score: 383
Period size: 158 Copynumber: 2.3 Consensus size: 160
15151812 AACTCCGTAT
* * *
15151822 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCA-TGAATCGAGCATACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATCAAGCATACGGGCGCTCA
* * *
15151886 GCCGACCGGAGAGGTAGAATGTGCAAGTCGGGGAT-CGACCCGATCCCCC-CTGCATGCTGTCGA
66 GCCGACCGGAGAGGCAGAATGGGCAAGCCGGGGATACG-CCCGATCCCCCTCTGCATGCTGTCGA
* ** *
15151949 TCCTACTGCTGCAACCCTC-AGTCTGG-TATGA
130 TCCCACTGCCACAACCCTCGA-TCTGGCT-GGA
* * ** * *
15151980 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGGAA-CAAGCATTTGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATCAAGCATACGGGCGCTC
* * * * * * * *
15152043 AGCTGGCTGGAGAGGCATAATGGGCAAGCCGGGGATATGCTCGGTCCCCCTCTGCGTGCTGTCGA
65 AGCCGACCGGAGAGGCAGAATGGGCAAGCCGGGGATACGCCCGATCCCCCTCTGCATGCTGTCGA
* *
15152108 TCCCGCTGCCACAACCCTCGATCTGGCTGGG
130 TCCCACTGCCACAACCCTCGATCTGGCTGGA
* *
15152139 GCTTAGACATGGAATGAACTCCCTTTGCCTAAGCCAACCCACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
15152182 AAACGGGCGT
Statistics
Matches: 165, Mismatches: 30, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 86 0.52
159 75 0.45
160 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATCAAGCATACGGGCGCTCA
GCCGACCGGAGAGGCAGAATGGGCAAGCCGGGGATACGCCCGATCCCCCTCTGCATGCTGTCGAT
CCCACTGCCACAACCCTCGATCTGGCTGGA
Found at i:15152354 original size:696 final size:688
Alignment explanation
Indices: 15150938--15152372 Score: 1544
Period size: 696 Copynumber: 2.1 Consensus size: 688
15150928 TCCGGCTAAG
* * * * *
15150938 GCTTAGAC-ATGGAATGAACTC-CGTCTGCCTAAGCCAACCCCACGAAACGAGCATGTGGGCACT
1 GCTTAGACTA-GGGATGAACTCTC-TATGCCTAAGCCAA-CCCATGAAACGAGCGTGTGGGCGCT
** * * * ** ** * * ** * **
15151001 CAACCAATC-GAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAACCCCCCTGTGTGCTGTCGA
63 CAGTCGATCGGAAAGGCAAAATGCATAAGTTAGGGATCGACCCGATCCCTCCTACGTCCCATCGA
* ** *
15151065 TCTTGCTCTTGGTCCTGCTAACGCAACCCTCGGTCTTGTCTGATCTTAGACTGGGAATGAACTCC
128 TCTTGCTCTTGGTCCTGCTAACGCAACCCTCGGTCTCGTCCAATCTTAGACTGAGAATGAACTCC
* * * *
15151130 GTATGCTTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCACAAAACGAGCGTGCGGGCGC
193 GTATGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCATACGGGCGC
* ** * * * *
15151195 TCAGCTGGTCGGAGAGGTAGAATACGTAAGTCGGCCGGACCCCCCTCCGTCCTGTCGATCCTGCT
258 TCAGCCGACCGGAGAGGTAGAATACGCAAGTCGGCCCGACCCCCCTCCATCCTGTCGATCCTACT
** * *
15151260 GTCGCAACACTTGGTCTGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
323 GTCGCAACACTCAGTCTGGCACGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * *
15151325 TGAAACAAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCGGGGATCGGCCCGG
388 CGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCGGGGATAGGCCCGG
* * * * * ***
15151390 TCCTCCTCTATGTGTTGTCGGTCTGACTGCCACAACCCTTTTTCCTACTGGGGCTTAGACATGGA
453 TCCCCCTCTACGTGCTGTCGATCCGACTGCCACAACCCTCGATCCTACTGGGGCTTAGACATGGA
* * * * ** *
15151455 ATGAACTCCCTATGCCTAAGCCAAGCCACGAAATGGGTGTACAAGTGCTCAACCGGTCGGAGAGA
518 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAAGCGCTCAACCGACCGAAGAGA
* * * *
15151520 CAGAATACACAAGCCGAGGATCGACCTAGTCTACCCTGTGTGCTACCGATCCTGCTGCCACAATC
583 CAGAATACACAAGCCGAGGATCGACCTAGTCTACCCTGCGTGCTACCGATCCTACTACCACAACC
** ** **
15151585 CTCGGTCAGGTTTGATCTTAGACTGGGAATGAACTCTGTAT
648 CTCAATCAGGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
15151626 GCTTAGACTGGGGATGAACTCTCTATGCCTAAGCCAACTCATGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACTAGGGATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
15151691 TCGATCGGAAAGGCAAAATGCATAAGTTAGGGATCGACCCGATCCCTCCTACGTCCCATCGATCT
66 TCGATCGGAAAGGCAAAATGCATAAGTTAGGGATCGACCCGATCCCTCCTACGTCCCATCGATCT
** *
15151756 TGCTGC-TGGTCCTGCTGTCGTAACCCTCGGTC-CGATCCAATCTTAGACTGAGAATGAACTCCG
131 TGCT-CTTGGTCCTGCTAACGCAACCCTCGGTCTCG-TCCAATCTTAGACTGAGAATGAACTCCG
* ** *
15151819 TATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAATCGAGCATACGGGCGCT
194 TATGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCATACGGGCGCT
** * *
15151884 CAGCCGACCGGAGAGGTAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGA
259 CAGCCGACCGGAGAGGTAGAATACGCAAGTC---G---G-CCCGA-CCCCCCTCCATCCTGTCGA
* * * *
15151949 TCCTACTG-CTGCAACCCTCAGTCTGGTATGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
316 TCCTACTGTC-GCAACACTCAGTCTGGCACGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * * * * **
15152013 CCAACCCACGGAACAAGCATTTGGGCGTTGAGCTG-GCTGGAGAGGCATAATGGGCAAGCCGGGG
380 CCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATC-GGAGAGGCAGAATGCACAAG-CGGGG
* * * *
15152077 ATATGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCG-CTGCCACAACCCTCGAT-CTGGCTGGGG
443 ATAGGCCCGGTCCCCCTCTACGTGCTGTCGAT-CCGACTGCCACAACCCTCGATCCT-ACTGGGG
* * * * **
15152140 CTTAGACATGGAATGAACTCCCTTTGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTTAGT
506 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAAGCGCTCAAC
* * * ** * * *
15152205 TGACCGAAGAGGCAGAATGCGTAAGCCGAGGATC-AGCTCGATC-CCCCTGCGTGCTACCGATCC
571 CGACCGAAGAGACAGAATACACAAGCCGAGGATCGACCTAG-TCTACCCTGCGTGCTACCGATCC
* *
15152268 TACTACCGCAACCCTCAAAT-TGGTCCGATCTTAGACTGGGAATGAACTCCATAT
635 TACTACCACAACCCTC-AATCAGGTCCGATCTTAGACTGGGAATGAACTCCATAT
* *
15152322 GCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGC
1 GCTTAGACTAGGGATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGC
15152373 CTAAGGGCGC
Statistics
Matches: 606, Mismatches: 121, Indels: 32
0.80 0.16 0.04
Matches are distributed among these distances:
687 27 0.04
688 210 0.35
689 2 0.00
691 1 0.00
694 1 0.00
695 6 0.01
696 224 0.37
697 133 0.22
698 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (688 bp):
GCTTAGACTAGGGATGAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
TCGATCGGAAAGGCAAAATGCATAAGTTAGGGATCGACCCGATCCCTCCTACGTCCCATCGATCT
TGCTCTTGGTCCTGCTAACGCAACCCTCGGTCTCGTCCAATCTTAGACTGAGAATGAACTCCGTA
TGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCA
GCCGACCGGAGAGGTAGAATACGCAAGTCGGCCCGACCCCCCTCCATCCTGTCGATCCTACTGTC
GCAACACTCAGTCTGGCACGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACAAGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCGGGGATAGGCCCGGTCC
CCCTCTACGTGCTGTCGATCCGACTGCCACAACCCTCGATCCTACTGGGGCTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAAGCGCTCAACCGACCGAAGAGACAG
AATACACAAGCCGAGGATCGACCTAGTCTACCCTGCGTGCTACCGATCCTACTACCACAACCCTC
AATCAGGTCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:15153888 original size:26 final size:26
Alignment explanation
Indices: 15153850--15153902 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15153840 GGCTCAAACT
*
15153850 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15153876 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15153902 C
1 C
15153903 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15154405 original size:26 final size:26
Alignment explanation
Indices: 15154376--15154428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15154366 TTGGTCCGAT
*
15154376 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGCATG
15154402 CTTAGACATGGAATGAACTCCGCATG
1 CTTAGACATGGAATGAACTCCGCATG
15154428 C
1 C
15154429 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGCATG
Found at i:15155210 original size:26 final size:26
Alignment explanation
Indices: 15155181--15155233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15155171 CCTGTCTGAT
15155181 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15155207 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15155233 C
1 C
15155234 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15155924 original size:159 final size:157
Alignment explanation
Indices: 15155568--15156002 Score: 352
Period size: 159 Copynumber: 2.8 Consensus size: 157
15155558 TATGCTTAGA
* * * ** *
15155568 AATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAACGTACGGGCGCTCAGCCGGCCG
1 AATGGAATAAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTACAGGAACTCACCCGGCCG
* * * * * *
15155633 GAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCTCTTACGTGCTGTCGATCTTGCTACC
66 GAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTGTCAATCTCGCTACC
* * * * *
15155698 GCAACCCTCAGTTCGGCCTGATCTTAG
131 ACAACCCTCAGTTCCGACTGAGCATAG
* ** * * * * * *
15155725 ATTGGGAATAAACTCTGTATGCCTAAGACAACCCACGAAACGAGCGTGCAGGAACTGACCCGGCT
1 AAT-GGAATAAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTACAGGAACTCACCCGGCC
* * * * * *
15155790 GTAGAGGCATAATACGCAAGCCGAGGATCGATCCGATCCCCCTCTGCGTGTTGTCAATCTCGCTG
65 GGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCT-TACGTGCTGTCAATCTCGCTA
*
15155855 CCACAACCCTCAG-TCCGACTGGGGCATAG
129 CCACAACCCTCAGTTCCGACT-GAGCATAG
* * * * * * * ** *
15155884 ACATGGAATTAACTCCCTATGCCTAAGCCAACCGATGAAACGGGA-GTGCGGGCACTCAGTCGAC
1 A-ATGGAATAAACTCCATATGCCTAAGCCAACCCATGAAAC-GAACGTACAGGAACTCACCCGGC
* * * * * * * *
15155948 AGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTGGTCCCCCTTGCGTGCTGTC
64 CGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTGTC
15156003 GATCCTACTA
Statistics
Matches: 214, Mismatches: 59, Indels: 9
0.76 0.21 0.03
Matches are distributed among these distances:
157 2 0.01
158 98 0.46
159 112 0.52
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
AATGGAATAAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTACAGGAACTCACCCGGCCG
GAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTGTCAATCTCGCTACC
ACAACCCTCAGTTCCGACTGAGCATAG
Found at i:15156807 original size:26 final size:26
Alignment explanation
Indices: 15156755--15156807 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15156745 GGCTCAAACT
* *
15156755 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGCATG
15156781 CTTAGACAT-GGAATGAACTACGCATG
1 CTTAGAC-TGGGAATGAACTACGCATG
15156807 C
1 C
15156808 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGCATG
Found at i:15157998 original size:26 final size:26
Alignment explanation
Indices: 15157960--15158012 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15157950 GGCTCAAAAT
*
15157960 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15157986 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15158012 C
1 C
15158013 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15158857 original size:26 final size:26
Alignment explanation
Indices: 15158828--15158877 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15158818 CCGATCTGAT
15158828 CTTAGAC-TGGGAATGAACTCTGTACG
1 CTTAGACAT-GGAATGAACTCTGTACG
15158854 CTTAGACATGGAATGAACTCTGTA
1 CTTAGACATGGAATGAACTCTGTA
15158878 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTACG
Found at i:15159740 original size:26 final size:26
Alignment explanation
Indices: 15159711--15159763 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15159701 CCGATCTGAT
*
15159711 CTTAGATAGGGAATGAAC-TCTGTATG
1 CTTAGACAGGGAATGAACTTC-GTATG
*
15159737 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTTCGTATG
15159763 C
1 C
15159764 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTTCGTATG
Found at i:15159931 original size:883 final size:863
Alignment explanation
Indices: 15157958--15160237 Score: 2519
Period size: 867 Copynumber: 2.6 Consensus size: 863
15157948 ATGGCTCAAA
*
15157958 ATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
* * * * *
15158022 CCCACGAAACAAGTGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
65 CCCACGAAACGAGTGTGCGGGCGCTCAGAC-GCCGGAGAGGCAGAATGCGTAAGC-GAGGATCG-
* * * * *
15158087 CCCGATCCCCCCTTGTGTGCTATCGATCCTACTATCGTAACCCTTGATCTGGTCCAATCTTAGAC
127 GCCGATCCCCCC-TGCGTGCTATCGATCCTACTATCGCAACCCTTGATCCGGTCCGATCTTAGAC
* * ** * *
15158152 TGGGAGTGAACTCCGTATGCATAAGTCAAATCACGAAACGAGCGTGCCGGCGTTGAGCCAACCGA
191 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGCCAACCGA
* * * * *
15158217 AGAGGCATAATGCGTAA-ACCAGGGATCAGCTCGGTCCCCCTT-TGTGTGCTGCCGGTCCCGTTG
256 AGAGGCATAATGCGCAAGA-CAGGGATCAGCTCGGT-CCCCTTCTGCGTGCTGCTGGTCCCGCTA
** * * * * *
15158280 CCACAACCCTTTGTTCGGCTGGGGCATAGACATGGAATGAACTCCTTATGCCTAAGCCAAACCAG
319 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * * * * * ** *
15158345 GAAACGAGCATGCGGCCGCTCAACCGGCCGGAGAGACAAAACGCGCAAGCCTAGGATCGGCCTGA
384 GAAACGGGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-GA
* * * * * ** *
15158410 TCTCCTCTGCGTGCTGTC-AGTCCTGCTGTTGCAACCCTCGGTCTGATCTGATCTTACCCTGAGA
448 TCCCCCCTGCGTGCTGTCGA-TCCTGCTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGA
* * * *
15158474 ATGAACTCCATATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTTAACCCATAAAATGATCG
512 ATGAACTCCGTATGCTTAGACTAGGAATGAACTCAGTATGCCTAAGTCAACCCATAAAATGAGCG
* ** * * *
15158539 TGCGGGCGCTTAGCCGATCGAAGAGGCATAGTGCGCAAGCCGGGGATCAGCTCGGTCCCTCTACG
577 TCCGAACGCTCAGCCGAGCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCTCTACG
** * * *
15158604 TGCTATCGATCCCGCTGTCGATCCTACTAGCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGA
642 TGCTATCGATCCCGCTCCCGATCCTACTAGCACAACCCTCAGTCCGACTAGGGCTGAGACATGGA
** * ***
15158669 ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAACCGGTCAGAGAGG
707 ATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCAACCAGAGAGG
* * ** * * *
15158734 TAGAATGCGCAAGCCGGGGATCGACCCGGTTGCCTTCTGCATGCTACCAATCCTGCTATTGGTCC
772 CAGAATGCACAAGCCGGGGATCGACCCGGTACCCCTCTACATGCTACCAATCCTGCTACTGGTCC
** *
15158799 TGTTGTCGCAACCCTCGGTCCGATCTG
837 TACTGTCGCAACCCTCAGTCCGATCTG
*
15158826 ATCTTAGACTGGGAATGAACTCTGTACGCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAA
* * ** *
15158890 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCTAGAGAGGTAGAATGCGTAAGCCGAGGATCGG
65 CCCACGAAACGAGTGTGCGGGCGCTCAGAC-GCCGGAGAGGCAGAATGCGTAAG-CGAGGATCGG
* * * * ** *
15158955 CCAGGTCCCCCCTGCGTACTATCGATCCTGCTATCGGAACCCTCAATCCGGACCGATCTTAGACT
128 CC-GATCCCCCCTGCGTGCTATCGATCCTACTATCGCAACCCTTGATCCGGTCCGATCTTAGACT
* * **
15159020 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTGAGCCGGCCGAA
192 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGCCAACCGAA
* * **
15159085 GAGGCATAATGCGCAAGATAGGGATCAGCTCGGTCCACTTCTGCGTGCTGCTGGTCCTACTACCA
257 GAGGCATAATGCGCAAGACAGGGATCAGCTCGGTCCCCTTCTGCGTGCTGCTGGTCCCGCTACCA
* *
15159150 CAACCCTCAGTCCGGCTGGGGCTTGGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAA
322 CAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * *
15159215 ATGGGCGTGCGGGCACTCAGCCAGTCGGAGAGGTAGAATACGTAAGCCGGGGATCGACACGGTCC
387 ACGGGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CGATCC
* * *
15159280 CCCCTACGTGCTGTCGATCCTGCTACCGCAACACTCGGTCCGAT-TCGATCTTAGACTGGGAATG
451 CCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATG
* * *
15159344 AACTTCGTATGTTTAGACT-GGAGATGAACTTCAG-ATGCCTAAGTCAACCCATGAAATGAGCGT
515 AACTCCGTATGCTTAGACTAGGA-ATGAAC-TCAGTATGCCTAAGTCAACCCATAAAATGAGCGT
*
15159407 CCGAACGCTAAGCCAGCCGGAGAGGCAGACCGGAGAGGCATAATGCGCAAGCCGGGGATTAGCTC
578 CCGAACGCT----CAGCC---GA-GC-GA----AGAGGCATAATGCGCAAGCCGGGGATCAGCTC
* * *
15159472 GGTCCCCTTCTGCGTGCTGTCGATCCCGCTCCC-AGTCCTACT-GCCACAACCCTCGGTCCGACT
630 GGT-CCC-TCTACGTGCTATCGATCCCGCTCCCGA-TCCTACTAG-CACAACCCTCAGTCCGACT
* * * *
15159535 GGGGCTGAGACATGGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAGCGTGCGGGCACT
691 AGGGCTGAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
* *
15159600 CAACCAACCAGAGAGGCAGAATGCACGAGCCAGGGGATCGACCCGGTCACCCCT-TACGTGCT-C
756 CAACCAACCAGAGAGGCAGAATGCACAAGCC-GGGGATCGACCCGGT-ACCCCTCTACATGCTAC
** * *
15159663 TTGATCCTGCTGCTGGTCCTACTGTCGCAACCCTTAGTCCGATCTG
819 -CAATCCTGCTACTGGTCCTACTGTCGCAACCCTCAGTCCGATCTG
15159709 ATCTTAGA-TAGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
1 ATCTTAGACT-GGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
* * * * * * * *
15159773 CCCACGAAATGAGTATGTGGGCGCTCAAACGATCGGAGAGGCAGAATACGTAAGTCAAGGATTGG
65 CCCACGAAACGAGTGTGCGGGCGCTCAGACG-CCGGAGAGGCAGAATGCGTAAG-CGAGGATCGG
* * * * * *
15159838 CTCGATCCCCCCTGCATGCTGTTGATCCTACTACCGCAACCCTTGGTCCAGTCCGATCTTAGACT
128 C-CGATCCCCCCTGCGTGCTATCGATCCTACTATCGCAACCCTTGATCCGGTCCGATCTTAGACT
* * * **
15159903 GGGAATGAACTCCATATCCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGCCCCCCGAA
192 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGCCAACCGAA
* * * *
15159968 GAGGCATAATGCCCAAG-CGGGGATCGACCT-GGTCCCCCTCTGCGTGCTG-TCGGTCCCGC-AG
257 GAGGCATAATGCGCAAGACAGGGATC-AGCTCGGTCCCCTTCTGCGTGCTGCT-GGTCCCGCTA-
* *
15160029 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
319 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * *
15160094 GAAACAGGTGTGCGGGCGA-TCAGCCAGTCAGA-AGGCAGAATGCGCAAGCAGGGGATTGACCCG
384 GAAACGGGCGTGCGGGC-ACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCG
* * * * * *
15160157 ATCCCCCCCTGTGAGCTATCGATCCTGCTATCGCAACCCTCAGTCCGATCTGATCTTAGACTAGA
447 AT-CCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGG
15160222 AATGAACTCCGTATGC
511 AATGAACTCCGTATGC
15160238 CTAAGCCAAC
Statistics
Matches: 1175, Mismatches: 195, Indels: 70
0.82 0.14 0.05
Matches are distributed among these distances:
866 9 0.01
867 354 0.30
868 125 0.11
869 2 0.00
871 4 0.00
874 2 0.00
875 1 0.00
876 2 0.00
880 33 0.03
881 32 0.03
882 311 0.26
883 294 0.25
884 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (863 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
CCACGAAACGAGTGTGCGGGCGCTCAGACGCCGGAGAGGCAGAATGCGTAAGCGAGGATCGGCCG
ATCCCCCCTGCGTGCTATCGATCCTACTATCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGCCAACCGAAGAGG
CATAATGCGCAAGACAGGGATCAGCTCGGTCCCCTTCTGCGTGCTGCTGGTCCCGCTACCACAAC
CCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGG
GCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCCCCT
GCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTAGGAATGAACTCAGTATGCCTAAGTCAACCCATAAAATGAGCGTCCGAACGC
TCAGCCGAGCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCTCTACGTGCTATCGA
TCCCGCTCCCGATCCTACTAGCACAACCCTCAGTCCGACTAGGGCTGAGACATGGAATGAACTCC
ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCAACCAGAGAGGCAGAATGCA
CAAGCCGGGGATCGACCCGGTACCCCTCTACATGCTACCAATCCTGCTACTGGTCCTACTGTCGC
AACCCTCAGTCCGATCTG
Found at i:15160148 original size:158 final size:158
Alignment explanation
Indices: 15159895--15160268 Score: 373
Period size: 158 Copynumber: 2.4 Consensus size: 158
15159885 CCAGTCCGAT
* * * * * *
15159895 CTTAGACTGGGAATGAACTCCATATCCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGATCAGC
* * * * * * * *
15159960 CCCCCGAAGAGGCATAATGCCCAAGCGGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGGTCCC
66 CCCCAGAAGAGGCAGAATGCCCAAGCGGGGATCGACCCGATCCCCCCCTGCGAGCTATCGATCCC
* *
15160025 GC-AGCCACAACCCTCGGTCCGA-CTGGGG
131 GCTA-CCACAACCCTCAGTCCGATCT-GAG
* *
15160053 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGTGTGCGGGCGATCA
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GTGTGCGGGCGATCA
** * * *
15160116 GCCAGTCAG-A-AGGCAGAATGCGCAAGCAGGGGATTGACCCGATCCCCCCCTGTGAGCTATCGA
64 GCC-CCCAGAAGAGGCAGAATGCCCAAGC-GGGGATCGACCCGATCCCCCCCTGCGAGCTATCGA
* * * *
15160179 TCCTGCTATCGCAACCCTCAGTCCGATCTGAT
127 TCCCGCTACCACAACCCTCAGTCCGATCTGAG
* * * *
15160211 CTTAGACTAGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGC
15160269 ACCGAGCCCG
Statistics
Matches: 176, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 16 0.09
158 153 0.87
159 7 0.04
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGATCAGC
CCCCAGAAGAGGCAGAATGCCCAAGCGGGGATCGACCCGATCCCCCCCTGCGAGCTATCGATCCC
GCTACCACAACCCTCAGTCCGATCTGAG
Found at i:15161615 original size:26 final size:26
Alignment explanation
Indices: 15161577--15161629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15161567 GGCTCAAAAT
*
15161577 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15161603 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15161629 C
1 C
15161630 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:15161959 original size:159 final size:158
Alignment explanation
Indices: 15161602--15162016 Score: 435
Period size: 159 Copynumber: 2.6 Consensus size: 158
15161592 AACTCCGTAT
* * *
15161602 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACCTAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * *
15161667 TCGATCGGAAAGGCAGAATGCACAAGTCGGGGACCGACTCGATCCCCACTACGTGCTATCGATCC
66 TCGATCGGAAAGGCAGAATGCACAAGTCGGGGACCGACCCGATCCCCACTACATGCTACCGATCC
* * *
15161732 TGCTGCCACAACCCTCGGTCCAGTCTGA
131 CGCTGCCACAACCCTCGGTCCAATCGGA
* * * *
15161760 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTG-GGGTCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGG-CGCTC
* * * * * * * * *
15161823 AG-CTGGTC-GAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCC
64 AGTC-GATCGGAA-AGGCAGAATGCACAAGTCGGGGACCGACCCGAT-CCCCACTACATGCTACC
* * *
15161886 GGTCCCGCTGCCACAACCCTTGGTCCGAAT-GGG
126 GATCCCGCTGCCACAACCCTCGGTCC-AATCGGA
* * * **
15161919 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * *
15161984 TCGGTCGGAGAGGTAGAATGCACAAGCCGGGGA
66 TCGATCGGAAAGGCAGAATGCACAAGTCGGGGA
15162017 TTAACTCGGT
Statistics
Matches: 209, Mismatches: 38, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.03
158 83 0.40
159 110 0.53
160 9 0.04
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
TCGATCGGAAAGGCAGAATGCACAAGTCGGGGACCGACCCGATCCCCACTACATGCTACCGATCC
CGCTGCCACAACCCTCGGTCCAATCGGA
Found at i:15162027 original size:159 final size:157
Alignment explanation
Indices: 15161602--15162104 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 157
15161592 AACTCCGTAT
* * * *
15161602 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACCTAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-CGGGCGCTCAG
* * * * * * * *
15161667 TCGATCGGAAAGGCAGAATGCACAAGTCGGGGACCGACTCGATCCCCACTACGTGCTATCGATCC
65 TCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGGTCCCCCCTGCATGCTACCGATCC
* * *
15161732 TGCTGCCACAACCCTCGGTCCAGTCTGA
130 CGCTGCCACAACCCTCGGTCCAATCGGA
* * * * *
15161760 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGGGGTCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCGGG-CGCTCA
* * * * * * *
15161824 G-CTGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCGG
64 GTC-GGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGGTCCCCC-CTGCATGCTACCGA
* *
15161888 TCCCGCTGCCACAACCCTTGGTCCGAAT-GGG
127 TCCCGCTGCCACAACCCTCGGTCC-AATCGGA
* * *
15161919 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-CGGGCGCTCAG
* * ** * * * *
15161984 TCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATTAACTCGGTCCCCCCTGCGTTCTGCTGATCC
65 TCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGGTCCCCCCTGCATGCTACCGATCC
** * * * *
15162049 TACTGTCGCAACCCTCGGTCCGATCAGA
130 CGCTGCCACAACCCTCGGTCCAATCGGA
* *
15162077 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15162105 TTAGATTGGG
Statistics
Matches: 274, Mismatches: 61, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 140 0.51
159 120 0.44
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGGTCCCCCCTGCATGCTACCGATCCC
GCTGCCACAACCCTCGGTCCAATCGGA
Found at i:15162114 original size:26 final size:26
Alignment explanation
Indices: 15162078--15162130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15162068 CCGATCAGAT
*
15162078 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15162104 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15162130 C
1 C
15162131 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15162491 original size:26 final size:26
Alignment explanation
Indices: 15162453--15162505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15162443 TCGGTCCGAT
15162453 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15162479 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15162505 C
1 C
15162506 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15162984 original size:26 final size:26
Alignment explanation
Indices: 15162955--15163007 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15162945 CCGGTCAGAT
**
15162955 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
15162981 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
15163007 C
1 C
15163008 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:15163321 original size:143 final size:143
Alignment explanation
Indices: 15163045--15163322 Score: 328
Period size: 143 Copynumber: 1.9 Consensus size: 143
15163035 GGGCGCTCAA
* * *
15163045 CCGACCGAAAAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATC
1 CCGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTACGTGCTGCCGATC
* ** * * * **
15163110 CTACTGTCGTAACCCTTGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTTA
66 CCACTGTCACAACCCTCGGTCCGAGCTAAGCTTAGACTGGGAATGAACTCCGTATGCATAAGCCA
15163175 ACCCACGAATGAG
131 ACCCACGAATGAG
* * * *
15163188 CCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTC
1 CCGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTACGTGCTGCCGATC
* * ** *
15163253 CCGCTGTCACAACCCTCGGTCTG-GCTGGGGCTTAGACAT-GGAATGAACTCTC-TATGCCTAAG
66 CCACTGTCACAACCCTCGGTCCGAGCT-AAGCTTAGAC-TGGGAATGAACTC-CGTATGCATAAG
15163315 CCAACCCA
128 CCAACCCA
15163323 TGAAACGGGC
Statistics
Matches: 112, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
142 2 0.02
143 108 0.96
144 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.19
Consensus pattern (143 bp):
CCGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTACGTGCTGCCGATC
CCACTGTCACAACCCTCGGTCCGAGCTAAGCTTAGACTGGGAATGAACTCCGTATGCATAAGCCA
ACCCACGAATGAG
Found at i:15163445 original size:486 final size:487
Alignment explanation
Indices: 15162265--15163603 Score: 1339
Period size: 486 Copynumber: 2.7 Consensus size: 487
15162255 ATTTTGCTAC
* * * * *
15162265 CACAACCCTCGGTCCGGCTGGGGCTCAGACATGGAATGAACT-TCGTATGGCAAAGGCAACCCAT
1 CACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCAT
* * * * * *
15162329 GAAATGAGTGTGCGGGTGCTCGGCCAATC-AGAGAGGCTGAATGCGCAAGCTGGGGATCGATCCG
65 GAAATGGGCGTGCGGGTGCTCAG-CGATCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGACCCG
* * * * *
15162393 GTCCCCCCTGCGTACTGTCGATCCTGCTGCTGGTCCTGCTACCAT-AACCTTCGGTCCGATCTTA
128 GTCCCCCCTGCGTGCT-TCGAT-C--CTGCT--ACC-GCAACCATCGATC-T-GGTCCGATCTTA
* * *
15162457 GACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCATATGCCTAAGCTAACCCACGA
184 GACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * * * *
15162522 AATGAGCGTGCAGGCGCTCAGCCGGTCGGAGGGGCAAAATGCGCAAG-TCAGGGATCGGCCCGGT
249 AACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCT-AGGGATCGGCCCGAT
* * * * *
15162586 -CCCCCGTCGCATGCTGTCGATCCTGCTACCGCAAACCTCGGTCCGATCCGATGTTAGACTGGGA
313 CCCCCCCT-GCGTGCTGTCGATCCTACTACCGCAAACCTCGGTCCGATCCAATCTTAGACTGGGA
* * * *
15162650 ATGAACTCTGTATGCGTAAGTCAACCCATGAAACGAGCATGCGGGTGTTGAGCTAACCGGAGAGG
377 ATGAACTCCGTATGCATAAGTCAACCC----AACGA-CA-------G-TGAGCCAACCGAAGAGG
** * * * *
15162715 CATAATACGAAAGCTGGGGATCGACCCAGTTCGCCTCTGCGTGCTGTCAGTCCCACTGT
429 CATAATACGAAAGCCAGGGATCGACCCAGTCCCCCTCTACGTGCTGCCAGTCCCACTGT
* * ** *
15162774 CACAACCCTCGGTCAGGCTGGGGCTTTGACATGGAATGAACTCCCTACACCTAAGCCAACCCACG
1 CACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATG
* ** * * * * * * *
15162839 AAATGGGCGTACGGGTGCTCAGCTGGCCGAAGAGGTAGAATGCACAAACCGGGGATCAACTCGAT
66 AAATGGGCGTGCGGGTGCTCAGC-GATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGT
* * ** * * * *
15162904 CCCCCCTGCGTGCTGCTGATCCTGATGTCGCAACCTTCGGTCCGGTCAGATCTTAGACTGGGAAT
130 CCCCCCTGCGTGCTTC-GATCCTGCTACCGCAACCATCGATCTGGTCCGATCTTAGACTGGGAAT
* * *
15162969 GAACTCCGTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTG
194 GAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTG
* * * * *
15163034 CGGGCGCTCAACCGACCGAAAAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCCTGCG
259 CGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCCTGCG
** * * * *
15163099 TGCTGTCGATCCTACTGTCGTAACCCTTGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTA
324 TGCTGTCGATCCTACTACCGCAAACCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTA
* * * * *
15163164 TGCATAAGTTAACCC-ACGA-A-TGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGC
389 TGCATAAGTCAACCCAACGACAGTGAGCCAACCGAAGAGGCATAATACGAAAGCCAGGGATCGAC
* *
15163226 CC-GATCCCCCTCTACGTGCTGCCGGTCCCGCTGT
454 CCAG-TCCCCCTCTACGTGCTGCCAGTCCCACTGT
*
15163260 CACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATG
1 CACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATG
* * * *
15163325 AAACGGGCGTGCGGGTGCTCTGTCGATCGAAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGGT
66 AAATGGGCGTGCGGGTGCTCAG-CGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGT
* * **
15163390 CCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCGATCTGGTCCTATCTTAGACTAAGAAT
130 CCCCCCTGCGTGCT-TCGATCCTGCTACCGCAACCATCGATCTGGTCCGATCTTAGACTGGGAAT
** * *
15163455 GAACTCCGTATGCTTAGAC-TGGGGTCGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGT
194 GAACTCCGTATGCTTAGACATGGAAT-GAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGT
** * * * * ** * * *
15163519 GCGGATGCTCAGCCGGCAGGAGAGGCATAATGCTCAAGCCAGGGATCAACTCGATCCCCCTCTGT
258 GCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCCTGC
*
15163584 GTGCTGTCGATCCTGCTACC
323 GTGCTGTCGATCCTACTACC
15163604 TATCCTGCTA
Statistics
Matches: 681, Mismatches: 138, Indels: 45
0.79 0.16 0.05
Matches are distributed among these distances:
485 4 0.01
486 340 0.50
487 2 0.00
495 1 0.00
497 4 0.01
502 192 0.28
503 13 0.02
504 2 0.00
506 4 0.01
508 3 0.00
509 114 0.17
510 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (487 bp):
CACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATG
AAATGGGCGTGCGGGTGCTCAGCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTC
CCCCCTGCGTGCTTCGATCCTGCTACCGCAACCATCGATCTGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCCTGCGTG
CTGTCGATCCTACTACCGCAAACCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
CATAAGTCAACCCAACGACAGTGAGCCAACCGAAGAGGCATAATACGAAAGCCAGGGATCGACCC
AGTCCCCCTCTACGTGCTGCCAGTCCCACTGT
Found at i:15164562 original size:170 final size:170
Alignment explanation
Indices: 15164288--15164623 Score: 491
Period size: 170 Copynumber: 2.0 Consensus size: 170
15164278 CCACTACCGG
* *
15164288 TCCTGCTGCTACAACCCTCGGTCCAGTTGGGGCTTAGATATGGAATGAACTCCGTATGCCAAAGC
1 TCCTGCTGCTACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCAAAGC
* * * *
15164353 CAACCCATGAAACGAGCGTACGGGCGCTCAGTCGATCGGAGAGGTAGAATGCACAAGCTTGGGAT
66 CAACCCATAAAACAAGCGTACGGGAGCTCAGTCGATCGGAGAGGTAGAATGCACAAGCTGGGGAT
*
15164418 CGGCCCGGTCCCTCC-TATGAGCTGTCGATCCTGCTACCTA
131 CGACCCGGTCCC-CCATATGAGCTGTCGATCCTGCTACCTA
*
15164458 TCCTGCTCGC-ACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 TCCTGCT-GCTACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCAAA
*
15164521 GCCAACCCATAAAACAAGCGTGCGGGAGCTCAG-CTGATCGGAGAGGTAGAATGCACAAGCTGGG
64 GCCAACCCATAAAACAAGCGTACGGGAGCTCAGTC-GATCGGAGAGGTAGAATGCACAAGCTGGG
** *
15164585 GATCGATTCGGTCCCCCATTATGTGCTGTCGATCCTGCT
128 GATCGACCCGGTCCCCCA-TATGAGCTGTCGATCCTGCT
15164624 GCCACAACCC
Statistics
Matches: 149, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
169 4 0.03
170 124 0.83
171 21 0.14
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (170 bp):
TCCTGCTGCTACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCAAAGC
CAACCCATAAAACAAGCGTACGGGAGCTCAGTCGATCGGAGAGGTAGAATGCACAAGCTGGGGAT
CGACCCGGTCCCCCATATGAGCTGTCGATCCTGCTACCTA
Found at i:15164746 original size:159 final size:159
Alignment explanation
Indices: 15164458--15164899 Score: 437
Period size: 159 Copynumber: 2.8 Consensus size: 159
15164448 CTGCTACCTA
* ***
15164458 TCCTGCT-CGCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGC-CACAACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* ** * * * * * * **
15164522 CCAACCCATAAAACAAGCGTGCGGGAGCTCAGCTGATCGGAGAGGTAGAATGCACAAGCTGGGGA
65 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCAGGGA
* ** * *
15164587 TCGATTCGGTCCCCCAT-TAT-GTGCTGTC-G
130 TCAACCCGATCCCCC-TCT-TCATGCTGTCAG
* * *
15164616 ATCCTGCTGCCACAACCCTTAGTCCGA-TCCAATCTTATA-ATGGTAATGAACTCCGTATGCCTA
1 -TCCTGCTGCCACAACCCTCAGTCCGACT-CAAGCTTAGACATGG-AATGAACTCCGTATGCCTA
* * * * * *
15164679 TGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCGATCGGGGAGGCATAATACGCAAGCCAGG
63 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCAGG
15164744 GATCAACCCGATCCCCCTCTTCATGCTGTCAG
128 GATCAACCCGATCCCCCTCTTCATGCTGTCAG
* *** * *
15164776 TCCTGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGT
1 TCCTGCTGCCACAACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCCGTATGCCTAAGT
* * * *
15164841 CAACCCACGAAACGGGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATACGTAAGCC
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCC
15164900 GAGGATTGGC
Statistics
Matches: 227, Mismatches: 48, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
158 7 0.03
159 213 0.94
160 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (159 bp):
TCCTGCTGCCACAACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCAGGGAT
CAACCCGATCCCCCTCTTCATGCTGTCAG
Found at i:15164995 original size:26 final size:26
Alignment explanation
Indices: 15164966--15165018 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15164956 CTGGTCCGAT
15164966 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15164992 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15165018 C
1 C
15165019 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15165739 original size:26 final size:26
Alignment explanation
Indices: 15165701--15165753 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15165691 GGCTCAAAAT
15165701 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15165727 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15165753 C
1 C
15165754 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15165935 original size:26 final size:26
Alignment explanation
Indices: 15165897--15165949 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15165887 TCCAGTCCAA
15165897 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15165923 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15165949 C
1 C
15165950 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15166286 original size:159 final size:158
Alignment explanation
Indices: 15165922--15166371 Score: 446
Period size: 159 Copynumber: 2.8 Consensus size: 158
15165912 AACTCCGTAT
* * *
15165922 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-TTAG
* * * * *
15165987 CCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGGT-CCCCCTGTGTGCT-ATCAATC
65 CCAGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTGCTCAATC
** * * *
15166050 CTACGACTGCAACCCTCGGTTCGGTCCGA
130 CTACGACCACAACCCTCAGTCCGCTCCGA
** * * * *
15166079 TATTTGAC-TGGGAATAAACAT-TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTG
1 GCTTAGACAT-GGAATGAAC-TCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTT-
* * * * *
15166142 AGTCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACTCGATCCCCCTCTGTGTGCTGCT-G
63 AGCCAGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCC-CTGTGTGCTGCTCA
* * * * * *
15166206 GTCCTGCTACCACAACCTTCAGTCCGACT-GGG
127 ATCCTACGACCACAACCCTCAGTCCG-CTCCGA
* *
15166238 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-TTAG
* * * * *
15166303 CCTGCCGAAGAGGCAAAATGCGCAAGTCAGGGATCGGCCCGATCCTCCCCTGCGTGCTGC-CAAT
65 CCAGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCC-CCCCTGTGTGCTGCTCAAT
15166367 CCTAC
129 CCTAC
15166372 TACTGGTATG
Statistics
Matches: 233, Mismatches: 48, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 86 0.37
158 6 0.03
159 131 0.56
160 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTAGC
CAGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTGCTCAATCC
TACGACCACAACCCTCAGTCCGCTCCGA
Found at i:15166984 original size:159 final size:157
Alignment explanation
Indices: 15166626--15167054 Score: 423
Period size: 159 Copynumber: 2.7 Consensus size: 157
15166616 ACCTCCGTAT
* * * *
15166626 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGAGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTAAG
* ** * * * * * * *
15166691 TCGATTGGAGAGGCAGAATGCATAAGTCGGGGATCAGCCTGATCCCCCTACGTGCTGTTGATCCT
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTATCGATCCC
* * * * *
15166756 GCTATCACAACCCTCAGTTTGGTCTGA
131 ACTACCACAACACTCAGTCTGGACTGA
* * * * * *
15166783 TCTTATAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTAA
* ** * *
15166847 GCCGACCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCTCTCTTCGTGCTATCGGT
65 GCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCC-C-CTACGTGCTATCGAT
* *
15166912 CCCACTACCACAACACTCGGTCT-GACTGGG
128 CCCACTACCACAACACTCAGTCTGGACT-GA
* * * * *
15166942 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTAAG
* ***
15167007 CC-ACCCAGAGAGGCAGAATGCACAAGCCAAAGATCGGCCCGATCCCCC
66 CCGA-CCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC
15167055 CCTGCATGCT
Statistics
Matches: 218, Mismatches: 48, Indels: 12
0.78 0.17 0.04
Matches are distributed among these distances:
156 1 0.00
157 90 0.41
158 6 0.03
159 120 0.55
160 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTAAG
CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTATCGATCCC
ACTACCACAACACTCAGTCTGGACTGA
Found at i:15167130 original size:159 final size:159
Alignment explanation
Indices: 15166751--15167131 Score: 356
Period size: 159 Copynumber: 2.4 Consensus size: 159
15166741 CGTGCTGTTG
* * * * * * *
15166751 ATCCTGCTATCACAACCCTC-AGTTTGGTCTGATCTTATACTGGGAATGAACTTCGTATGCATAA
1 ATCCTGCTATCACAACCCTCGA-TTTGGACCGACCTTAGACTAGGAATGAACTTCCTATGCCTAA
* * * * * ** ***
15166815 GTCAACCCACGAAATGAGCGTACGGGTGCTGAGCCGACCGGAGAGGCATAATGTGCAAGCCGGGG
65 GTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAAAG
* * * * * *
15166880 ATCGGCCCGATCCCTCTCTTCGTGCTATCG
130 ATCGGCCCGATCCCCCCCTGCATGCTACCA
* ** * * * * * ** *
15166910 GTCCCACTACCACAACACTCGGTCT-GACTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTA
1 ATCCTGCTATCACAACCCTCGATTTGGAC-CGACCTTAGACTA-GGAATGAACTTCCTATGCCTA
*
15166973 AGTCAACCCACGAAACGGGCGTACGGGCGCTCAGCC-ACCCAGAGAGGCAGAATGCACAAGCCAA
64 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGA-CCAGAGAGGCAGAATGCACAAGCCAA
15167037 AGATCGGCCCGATCCCCCCCTGCATGCTACCA
128 AGATCGGCCCGATCCCCCCCTGCATGCTACCA
* * *
15167069 ATCCTGCTATCGCAACCCTCGATTTGGACCGACCTTAGACTAGGAATGAACTTCTTCTGCCTA
1 ATCCTGCTATCACAACCCTCGATTTGGACCGACCTTAGACTAGGAATGAACTTCCTATGCCTA
15167132 GATTGGGGAT
Statistics
Matches: 169, Mismatches: 47, Indels: 12
0.74 0.21 0.05
Matches are distributed among these distances:
158 3 0.02
159 162 0.96
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (159 bp):
ATCCTGCTATCACAACCCTCGATTTGGACCGACCTTAGACTAGGAATGAACTTCCTATGCCTAAG
TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAAAGA
TCGGCCCGATCCCCCCCTGCATGCTACCA
Found at i:15167477 original size:26 final size:26
Alignment explanation
Indices: 15167436--15167488 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15167426 CTGGTCTGAT
15167436 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15167462 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15167488 C
1 C
15167489 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15167930 original size:26 final size:26
Alignment explanation
Indices: 15167901--15167953 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15167891 TCGATCTGAT
*
15167901 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
15167927 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15167953 C
1 C
15167954 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15169062 original size:26 final size:26
Alignment explanation
Indices: 15169024--15169076 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15169014 TCGGTCAGAT
* *
15169024 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
15169050 CTTAGAC-ATGGAATAAACTCCGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
15169076 C
1 C
15169077 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:15169462 original size:159 final size:157
Alignment explanation
Indices: 15169049--15169466 Score: 364
Period size: 159 Copynumber: 2.6 Consensus size: 157
15169039 AACTCTGTAT
* * *
15169049 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCGCTCAG
* * ** *** *
15169114 -CTGGCCGGAGAGTAGAATGCATAAGCCAGGGATCGGCCTGGTCCCCCCTACGTGCTATCAATCC
66 CCT-ACCGGAGAGTAGAATGCACAAGCTGGGGATCGGCCCAATCCCCCCTACGTGCTACCAATCC
** * *
15169178 TGCTACCGTAACCTTCAGTTCAGTCTGA
130 TGCTACCACAACCTTCAGTCCAGACTGA
* * * * * * *
15169206 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CGAGCGTTCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAG-GCGTGCGGGCGCTC
** * * * * ** *
15169269 AGCC-AGTTGGAAAGGCATAATGCGCAAG-TCGGGGATCGGCCCAATCCCTTTCTACGTGCTGCC
64 AGCCTA-CCGGAGA-GTAGAATGCACAAGCT-GGGGATCGGCCCAATCCC-CCCTACGTGCTACC
* *
15169332 AATCCTGCTACCACAAGCC-TCGGTCCA-ACTGGG
125 AATCCTGCTACCACAA-CCTTCAGTCCAGACT-GA
* * *
15169365 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCGCTCAG
*
15169430 CCTACCGGAGAGATAGAATCCACAAGCTGGGGATCGG
66 CCTACCGGAGAG-TAGAATGCACAAGCTGGGGATCGG
15169467 TTCGGTCCCC
Statistics
Matches: 198, Mismatches: 49, Indels: 26
0.73 0.18 0.10
Matches are distributed among these distances:
156 1 0.01
157 56 0.28
158 28 0.14
159 107 0.54
160 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCGCTCAG
CCTACCGGAGAGTAGAATGCACAAGCTGGGGATCGGCCCAATCCCCCCTACGTGCTACCAATCCT
GCTACCACAACCTTCAGTCCAGACTGA
Found at i:15170726 original size:881 final size:879
Alignment explanation
Indices: 15168922--15170864 Score: 2298
Period size: 880 Copynumber: 2.2 Consensus size: 879
15168912 AGAGGCCGGT
* * * * *
15168922 CGAAGAGGCAGAATGCATAAGTCGGGGATCAGCCCGATCCCCCCCTGTGTGCTATCGATCCTGCT
1 CGAAGAGGCAGAATGCACAAATCAGGGATCAGCCCGATCCCCCCCTGCGTGCTACCGATCCTGCT
* ** * * * *
15168987 GCTGGTCCTGTTATTGCAACCCT-TAGTTCGGTCAGATCTTAGACTAGGAATGAACTCTGTATGC
66 GCTGGTCCTGCTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
* * * * *
15169051 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGAGCGCTCAGCT
130 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAACC
* * * * *
15169116 GGCCGGAGAGTAGAATGCATAAGCCAGGGATCGGCCTGGTCCCCCCTACGTGCTATCAATCCTGC
195 GACCGGAGAGTAGAATGCACAAGCCAGGGACCGGCCCGGTCCCCCCTACATGCTATCAATCCTGC
* *
15169181 TACCGTAACCTTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
260 TACAGTAACCTT-AGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
* ** ** **
15169246 ACGAAACGAGCGTTCGGGTGCTGAGCCAGTTGGAAAGGCATAATGCGCAAGTCGGGGATCGGCCC
324 ACGAAACAAGCGTTCGGGCACTGAGCCAACTGGAAAGGCATAATGCGCAAGTCGGGGATCAACCC
* ** *
15169311 AATCCCTTTCTACGTGCTGCCAATCCTGCTACCACAAGCCTCGGTCCAACTGGGGCTTAGACATG
389 AATCCCCTTCTACGTGCTGCCAATCCCACTACCACAACCCTCGGTCCAACTGGGGCTTAGACATG
* * * * * *
15169376 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCATGCGGGCGCTTAGCCTACCGGAGA
454 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCATACGGGCACTCAGCCTACCGAAGA
* * ** * **
15169441 GATAGAATCCACAAGCTGGGGATCGGTTCGGTCCCCCTTGTGTGCTGCCTATCCTGTTGCTGCAA
519 GACAGAATCCACAAGCTGGGGATCGGTTCAGTCCCCCTTACGTGCTGCCGATCCTACTGCTGCAA
* * * *
15169506 CCCTCGGTCCAGTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCT
584 CCCTCGATCCAGTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCG
** ** ** * *
15169571 TACGCCTAAGTCAACCCATGAAATGAGCATGTGGGTGCTCAGTCGACCGGAGAGGTCGGTCGGAA
649 TACGCCTAAGTCAACCCATGAAACAAGCATACGGGTGCTCAACCGACCGGAGAGGTCGCTAGGAA
* * *
15169636 GGGCATAATGCGTAAGCCAAGGTTCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACCGG
714 GGGCATAATGCGCAAGCCAAGGTTCAACCCGATCCCCCTATGCGTGCTGTCGATCCCACTACCGG
* * * **
15169701 TCCTGTTGCCACAACCCTCGGTCTGGCTGGGGCTTACACATGGAATGAACTCCGTATGCCTAAGC
779 TCCTGCTGCCACAACCCTCAGTCCGGCTAAGGCTTACACATGGAATGAACTCCGTATGCCTAAGC
* * ** *
15169766 CAACCCACGATACGAGCGTGGGGGTGCTCAGCCGGC
844 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGC
* * * *
15169802 CGAAGAGGCAGAATGCAC-AAGCTGTGGATCAGCCCGGT-CCCCCCTGCATGCTACCGATCCTGC
1 CGAAGAGGCAGAATGCACAAATCAG-GGATCAGCCCGATCCCCCCCTGCGTGCTACCGATCCTGC
* * *
15169865 TGCGGGTCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
65 TGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
** ** * *
15169930 TTAGACATACAATGAACTCCGTATGCCTAAGCCAACTAACGAAACAAGCGTGTGGGCGCTCAACC
130 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAACC
* * * * * *
15169995 GACTGG-GAAGGTAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTGCATGCTTTCAATCTT
195 GACCGGAG-A-GTAGAATGCACAAGCCAGGGACCGGCCCGGTCCCCCCTACATGCTATCAATCCT
* * * **
15170059 GCTGCAGTAACCCTT-GTTCCGAT-TCGATCTTAGACTTGGAATGAACTTTGTATGCATAAGTCA
258 GCTACAGTAA-CCTTAGTTCAG-TCT-GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* *
15170122 ACCCACGAAGCAAGCGTTCGGGCACTGAGCCAACTGGAAAGGCATAATGTGCAAGTCGGGGATCA
320 ACCCACGAAACAAGCGTTCGGGCACTGAGCCAACTGGAAAGGCATAATGCGCAAGTCGGGGATCA
* * ** * * * *
15170187 ACCCGATCCCCTTCTACGTGCTGTCGGTCCCATTGCCACAACCCTTGGTCCGACTGGGGCTTAGA
385 ACCCAATCCCCTTCTACGTGCTGCCAATCCCACTACCACAACCCTCGGTCCAACTGGGGCTTAGA
* *
15170252 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCATACGGGCACTCAGTC-AGTC
450 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCATACGGGCACTCAGCCTA-CC
* * * *
15170316 GAAGAGGCAGAATGCATAAG-TCGGGGATCGGTTCAGTCCTCCC-TACGTGCTGTCGATCCTACT
514 GAAGAGACAGAATCCACAAGCT-GGGGATCGGTTCAGTCC-CCCTTACGTGCTGCCGATCCTACT
* *
15170379 G-TAGCAACCCTCGATCC-GATCTGATCTTAGACTGGGAATGAACTCCATTTGCTTAGATTGGGG
577 GCT-GCAACCCTCGATCCAG-TC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
* * ** *
15170442 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGTGCTCAACCGGTCGGATAGG
639 ATGAACTCCGTACGCCTAAGTCAACCCATGAAACAAGCATACGGGTGCTCAACCGACCGGAGAGG
** * * *
15170507 TCGACTA-G-AGAGGCATAATGCGCAAGCCGGGGATT-AGCCTGATCCCCCTATGTGTGCTG-CT
704 TCG-CTAGGAAG-GGCATAATGCGCAAGCCAAGG-TTCAACCCGATCCCCCTATGCGTGCTGTC-
*
15170568 GATCCCACTACCGGTCCTGCTGCCACAACCCTCAGTCCGGCTAAGGCTTAGACATGGAATGAACT
765 GATCCCACTACCGGTCCTGCTGCCACAACCCTCAGTCCGGCTAAGGCTTACACATGGAATGAACT
* * *
15170633 TCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAGCCAGC
830 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGC
* * * * * *
15170683 CGAAGAGGTAGAATGCACAAATCAGGGATCGGCCCGATCCCCCCCTACGTGCTGCTGATCTTGCT
1 CGAAGAGGCAGAATGCACAAATCAGGGATCAGCCCGATCCCCCCCTGCGTGCTACCGATCCTGCT
* * * * * *
15170748 GTTGGTCCTGCTGCCGTAACCTTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCT
66 GCTGGTCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCT
* * * *
15170813 TAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
131 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGC
15170865 AGATGCTCAG
Statistics
Matches: 887, Mismatches: 156, Indels: 38
0.82 0.14 0.04
Matches are distributed among these distances:
878 1 0.00
879 147 0.17
880 346 0.39
881 268 0.30
882 125 0.14
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (879 bp):
CGAAGAGGCAGAATGCACAAATCAGGGATCAGCCCGATCCCCCCCTGCGTGCTACCGATCCTGCT
GCTGGTCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCT
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAACCG
ACCGGAGAGTAGAATGCACAAGCCAGGGACCGGCCCGGTCCCCCCTACATGCTATCAATCCTGCT
ACAGTAACCTTAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAC
GAAACAAGCGTTCGGGCACTGAGCCAACTGGAAAGGCATAATGCGCAAGTCGGGGATCAACCCAA
TCCCCTTCTACGTGCTGCCAATCCCACTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCATACGGGCACTCAGCCTACCGAAGAGA
CAGAATCCACAAGCTGGGGATCGGTTCAGTCCCCCTTACGTGCTGCCGATCCTACTGCTGCAACC
CTCGATCCAGTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTA
CGCCTAAGTCAACCCATGAAACAAGCATACGGGTGCTCAACCGACCGGAGAGGTCGCTAGGAAGG
GCATAATGCGCAAGCCAAGGTTCAACCCGATCCCCCTATGCGTGCTGTCGATCCCACTACCGGTC
CTGCTGCCACAACCCTCAGTCCGGCTAAGGCTTACACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGGCACTCAGCCAGC
Found at i:15170821 original size:26 final size:26
Alignment explanation
Indices: 15170785--15170837 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15170775 CCGGTCCAAT
15170785 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
15170811 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15170837 C
1 C
15170838 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15172096 original size:26 final size:26
Alignment explanation
Indices: 15172045--15172097 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15172035 CCGATCTTAT
*
15172045 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
* *
15172071 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACACCATATG
15172097 C
1 C
15172098 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:15172473 original size:153 final size:156
Alignment explanation
Indices: 15172070--15172473 Score: 408
Period size: 153 Copynumber: 2.6 Consensus size: 156
15172060 AACACCGTAT
* * *
15172070 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
* * ** *
15172135 TCGGTCAGAGAGGTAGAATGCGCT-AGTCGAGGACCGATCTGCTCCCCCCTACGTGCTGTTGATC
66 TCGGTCAGAGAGGCAGAATGCG-TAAGCCGAGG--CGATCAACTCCCCCCTACGTGCTGTCGATC
** *
15172199 CTGCTACTGCAACCCTCGATCCGATCTGA
128 CTGCTACCACAACCCTCGATCCGAGCTGA
* * * * * * * *
15172228 TCTTGGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
* * * * * *
15172292 GTCGGTCAGAGAGGCATAATACGCAAGCCG-GG-GATCAAC-CCCCTCTGCGTGCTGTCGGTCCT
65 GTCGGTCAGAGAGGCAGAATGCGTAAGCCGAGGCGATCAACTCCCCCCTACGTGCTGTCGATCCT
*
15172354 GCTACCACAACCCTCGATCCG-GCTAGG
130 GCTACCACAACCCTCGATCCGAGCT-GA
* * * * *
15172381 GCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
* *
15172446 CCGG-CCGAAGAGGCAGAATGCGTAAGCC
66 TCGGTCAG-AGAGGCAGAATGCGTAAGCC
15172474 CGGTCCCCCT
Statistics
Matches: 199, Mismatches: 42, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
152 4 0.02
153 110 0.55
154 6 0.03
157 3 0.02
158 76 0.38
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
TCGGTCAGAGAGGCAGAATGCGTAAGCCGAGGCGATCAACTCCCCCCTACGTGCTGTCGATCCTG
CTACCACAACCCTCGATCCGAGCTGA
Found at i:15172567 original size:26 final size:26
Alignment explanation
Indices: 15172523--15172579 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
15172513 ATCGGTCCGG
15172523 TCCG-ATC-TTAGACTGGGAATGAAC
1 TCCGTATCGTTAGACTGGGAATGAAC
*
15172547 TCTGTATCGTTAGACAT-GGAATGAAC
1 TCCGTATCGTTAGAC-TGGGAATGAAC
15172573 TCCGTAT
1 TCCGTAT
15172580 GCCTAAGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 3 0.11
25 3 0.11
26 21 0.75
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
TCCGTATCGTTAGACTGGGAATGAAC
Found at i:15173785 original size:159 final size:158
Alignment explanation
Indices: 15173436--15173791 Score: 475
Period size: 158 Copynumber: 2.2 Consensus size: 158
15173426 ACTCTGTATG
*
15173436 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAA
* ** * * *
15173500 CCGACCGGAGAGGCAGAATGCATAAGCCGAGGATCGACTCGGTCCCCCATACGTGCTGTCGATCC
65 CCAACCAAAGAGGCAGAATGCACAAGCCGAGGATCGACTCGGTCCCCCATACGCGCTGTCAATCC
15173565 TGCTATCGCAACCCTCGATCCAGTCTGAT
130 TGCTATCGCAACCCTCGATCCAGTCTGAT
* * ** * * **
15173594 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAAC
* *
15173659 CAACCAAAGAGGCAGAATGCACAAGCCGAGGATCGACTCGGTCCCCTCTTAGGCGCTGTCAATCC
66 CAACCAAAGAGGCAGAATGCACAAGCCGAGGATCGACTCGGTCCCC-CATACGCGCTGTCAATCC
**
15173724 TGCTA-CTGCAACCCTC-AGTCTGGTCTGAT
130 TGCTATC-GCAACCCTCGA-TCCAGTCTGAT
*
15173753 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
15173792 CCGAAATGAG
Statistics
Matches: 172, Mismatches: 22, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
158 99 0.58
159 73 0.42
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAAC
CAACCAAAGAGGCAGAATGCACAAGCCGAGGATCGACTCGGTCCCCCATACGCGCTGTCAATCCT
GCTATCGCAACCCTCGATCCAGTCTGAT
Found at i:15174995 original size:26 final size:26
Alignment explanation
Indices: 15174954--15175003 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15174944 CTGGTCCAAC
*
15174954 CTTAGACTAGGAATGAACTTCGTAAG
1 CTTAGACTAGGAATGAACTCCGTAAG
* *
15174980 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
15175004 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAAG
Found at i:15176041 original size:159 final size:154
Alignment explanation
Indices: 15175647--15176154 Score: 423
Period size: 159 Copynumber: 3.2 Consensus size: 154
15175637 ACTTCGCATG
* * *
15175647 CTTAGACATGGAATGAACACCGTATGCTTAAGCCAACCCATGAAACAAGCGTGTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
* * * * ** * *
15175712 CGACCAAAGAGGTAGAATGCGCAAGTCGGGGACCGACCCGGTCCCTCAATGCGTACTGTCGATCC
66 AG-CCGAAGAGGTAGAATGCGCAAG-CCGGGATCGACCC-GTCCC-CCCTGTGTGCTGTCGATCC
* * * *
15175777 TGCTGCTGTAACCCTCAGTTCGATGTGA
127 TGCTGCTGCAACCCTCGGTCCGATGGGA
* * * * * * * *
15175805 TCTTAGA-GTGCGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 -CTTAGACATG-GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCA
* * * * *
15175869 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGTGTGCTATCGGT
64 G-CAGCCGAAGAGGTAGAATGCGCAAGCC-GGGATCGACCC-GTCCCCC-CTGTGTGCTGTCGAT
*
15175934 CCTGCTGCTGCAACCCTCGGTCCGCTTGGGGA
125 CCTGCTGCTGCAACCCTCGGTCCG-AT-GGGA
* * *
15175966 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
* * * *
15176030 AAGTCGGAGAGGTAGCATGCGCAAGCCGAGGATC-AGCCGATCCCCCCT-TACGTGCTGTCGATC
66 -AGCCGAAGAGGTAGAATGCGCAAGCCG-GGATCGACCCG-TCCCCCCTGT--GTGCTGTCGATC
* * * **
15176093 CTGCTGCCGCAACCCTCGGTCTGGTCTGA
126 CTGCTGCTGCAACCCTCGGTCCGATGGGA
* *
15176122 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAG
1 -CTTAGACAT-GGAATGAACTCCGTATGCATAAG
15176155 TCAATTCACA
Statistics
Matches: 278, Mismatches: 56, Indels: 31
0.76 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 5 0.02
158 73 0.26
159 189 0.68
160 5 0.02
161 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
AGCCGAAGAGGTAGAATGCGCAAGCCGGGATCGACCCGTCCCCCCTGTGTGCTGTCGATCCTGCT
GCTGCAACCCTCGGTCCGATGGGA
Found at i:15177423 original size:158 final size:158
Alignment explanation
Indices: 15177134--15177425 Score: 356
Period size: 158 Copynumber: 1.8 Consensus size: 158
15177124 AACTTCGTAT
** * * ** *
15177134 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAAGGAACTTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAACGTACGGGCACTCAG
* * * * * ** *
15177199 TGGGTCGGAGAGGCATAATTCACAAGCCGGGATCGACCTGGTCCCCCTCTACGTCCTGTTGGTCC
66 TGGATCGGAGAGGCAGAATGCACAAGCCGAGATCGACCCGGTCCCCCTCTACGTCCTGCCGATCC
15177264 TGCTGCCACAAGCCTTGGTTCAGCTGGG
131 TGCTGCCACAAGCCTTGGTTCAGCTGGG
*
15177292 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGA-GTACGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGAACGTACGGGCACTCA
* * * *
15177356 GTTGATCGGAGAGGCAGAATGCGCAAGCCAGAGATC-AGCCCGGT-CCCCTCTGCGTGCTGCCGA
65 GTGGATCGGAGAGGCAGAATGCACAAGCC-GAGATCGA-CCCGGTCCCCCTCTACGTCCTGCCGA
15177419 TCCTGCT
128 TCCTGCT
15177426 ACCGCAACCC
Statistics
Matches: 111, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
158 98 0.88
159 13 0.12
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAACGTACGGGCACTCAG
TGGATCGGAGAGGCAGAATGCACAAGCCGAGATCGACCCGGTCCCCCTCTACGTCCTGCCGATCC
TGCTGCCACAAGCCTTGGTTCAGCTGGG
Found at i:15178488 original size:158 final size:158
Alignment explanation
Indices: 15178199--15178490 Score: 336
Period size: 158 Copynumber: 1.8 Consensus size: 158
15178189 AACTTCGTAT
** * * * *
15178199 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAAGGAACTTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAGGAACGTGCGGGCGCTCAG
** * * * *** *
15178264 TGGGTCGGAGAGGCATAATTCACAAGCCGGGATCGACCTGGTCCCCCTCTACGTCCTGTTGGTCC
66 CCGGTCGGAGAGGCAAAATACACAAGCCGGGATCGACCCGGTCCCCCTCTACGTCCTACCGATCC
15178329 TGCTGCCACAAGCCTTGGTTCAGCTGGG
131 TGCTGCCACAAGCCTTGGTTCAGCTGGG
* *
15178357 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGG-GCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA-GGAACGTGCGGGCGCTCA
* ** * ** *
15178421 GCCGGTCGGAGAGTCAAAATAGGCAAGCCGAGGATCGGCCCGGTCCCCCT-TGTGTGCTACCGAT
65 GCCGGTCGGAGAGGCAAAATACACAAGCCG-GGATCGACCCGGTCCCCCTCTACGTCCTACCGAT
15178485 CCTGCT
129 CCTGCT
15178491 ACCGTAACCC
Statistics
Matches: 108, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
158 89 0.82
159 19 0.18
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAGGAACGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATACACAAGCCGGGATCGACCCGGTCCCCCTCTACGTCCTACCGATCC
TGCTGCCACAAGCCTTGGTTCAGCTGGG
Found at i:15178552 original size:26 final size:26
Alignment explanation
Indices: 15178516--15178568 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15178506 CCTATCTAAT
*
15178516 CTTAGATTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
15178542 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
15178568 C
1 C
15178569 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:15179609 original size:26 final size:26
Alignment explanation
Indices: 15179580--15179632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15179570 CTAGTCTGAT
*
15179580 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGTG-ATGAACTCCGTATG
15179606 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGGTGATGAACTCCGTATG
15179632 C
1 C
15179633 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCCGTATG
Found at i:15179827 original size:26 final size:26
Alignment explanation
Indices: 15179790--15179840 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15179780 TGGTTTGATT
*
15179790 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15179816 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
15179841 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15180326 original size:26 final size:26
Alignment explanation
Indices: 15180290--15180342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15180280 TTGGTCTAAT
15180290 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15180316 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15180342 C
1 C
15180343 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15187760 original size:159 final size:157
Alignment explanation
Indices: 15187501--15187785 Score: 354
Period size: 159 Copynumber: 1.8 Consensus size: 157
15187491 TCTTAGACTG
* * ** * **
15187501 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTACGGGTGCTGAGTCAGCCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCAGCCGGAG
* *
15187566 AGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCAATCTCACTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCAGT-CCCC-CTGCGTGCTGCCAATCTCACTGCCAC
15187631 AACCCTTAGTCCGGTTGGGGCTGAGACAT
129 AACCCTTAGTCCGGTTGGGGCTGAGACAT
* * * * * *
15187660 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAACCAGGCGTAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCAGCCGGAG
* * *** * *
15187725 AGGCAGAATGTGCAAGCCGGGGATCGGCTTGGTCCCCCTGCGTGCTGCCGATCTTACTGCC
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTGCGTGCTGCCAATCTCACTGCC
15187786 GTAACCCTCG
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
157 21 0.20
158 4 0.04
159 79 0.76
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCAGCCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTGCGTGCTGCCAATCTCACTGCCACAA
CCCTTAGTCCGGTTGGGGCTGAGACAT
Found at i:15187843 original size:26 final size:26
Alignment explanation
Indices: 15187807--15187860 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15187797 TCTAGTTTGA
15187807 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
* *
15187833 GCTTAGGCTGGGGATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
15187859 GC
1 GC
15187861 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:15188582 original size:26 final size:26
Alignment explanation
Indices: 15188531--15188583 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15188521 GGCTCAAAAT
*
15188531 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15188557 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15188583 C
1 C
15188584 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15189083 original size:26 final size:26
Alignment explanation
Indices: 15189033--15189083 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15189023 GGTCCAATCT
**
15189033 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCACATGCG
*
15189059 TAGACTGGGGATGAACTCCACATGC
1 TAGACTGGGAATGAACTCCACATGC
15189084 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCACATGCG
Found at i:15189939 original size:26 final size:26
Alignment explanation
Indices: 15189898--15189950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15189888 TCGATCTGAT
15189898 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
15189924 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15189950 C
1 C
15189951 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15191057 original size:157 final size:156
Alignment explanation
Indices: 15190568--15191057 Score: 489
Period size: 157 Copynumber: 3.1 Consensus size: 156
15190558 GCTTGGACAT
** * * * * *
15190568 GGAATGAACTATGTATGCCTAGGCCAACCCATGAAATGAGCGTGCGAGCATTCAGCCAACCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACC-GA-
* * **
15190633 AGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTTGCATGCTATCGATCTTGCTACCGCA
64 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCATGCTGCCGATCTTGCTACCGCA
* * *
15190698 ACCCTCGATCCGGTCTGATCTTAGACTG
129 ACCCTCGATCTGGTCCGATCTTAGAATG
* * * *
15190726 GGAATGAACTCCGTATGCATAAGTCAACCCATAAAATGAGCGTACGGGCACTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACCGAAG
* * ** * * ** * *
15190791 GCATAATGCGCAAGCCGGGGATCGGCTTGATCCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAA
66 GCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT-TGCATGCTGCCGATCTTGCTACCGCAA
* ** **
15190856 CCCTCGATCTAGTTGGGGCTTAGACAT-
130 CCCTCGATCTGGTCCGATCTTAGA-ATG
* * * * *
15190883 GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGTGGGCACTCAGCCGACCGAAT
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACCG-A-
* * * * * **
15190948 AGGCAGAATACGTAAGTCGGGGATCAACCCGGTCCCTCTTGTGTGCTGCCGATCTTGCTACCGCA
64 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCATGCTGCCGATCTTGCTACCGCA
* *
15191013 ACCCTCGGTCTGGTCCGATCTTAGAGTG
129 ACCCTCGATCTGGTCCGATCTTAGAATG
15191041 GGAATGAACT-CGTATGC
1 GGAATGAACTCCGTATGC
15191058 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 66, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
156 32 0.12
157 100 0.38
158 100 0.38
159 29 0.11
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACCGAAG
GCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCATGCTGCCGATCTTGCTACCGCAAC
CCTCGATCTGGTCCGATCTTAGAATG
Found at i:15191082 original size:26 final size:25
Alignment explanation
Indices: 15191032--15191083 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
15191022 CTGGTCCGAT
* *
15191032 CTTAGAGTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCATATG
*
15191057 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACT-CATATG
15191083 C
1 C
15191084 ATAAGTCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCATATG
Found at i:15191419 original size:170 final size:171
Alignment explanation
Indices: 15191056--15191424 Score: 393
Period size: 171 Copynumber: 2.2 Consensus size: 171
15191046 GAACTCGTAT
* * * * * *
15191056 GCTTAGACTGGGGATGAACTCCATATGCATAAGTCAAGCCATGAAATAAGCGTGCGGGTGCTCTG
1 GCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATAAGCGTGCGGGTGCTCAG
* * * * *
15191121 CCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCAGTCAATC
66 CCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCAGTCAATC
* * * * * ***
15191186 CCGCTACCGGTCCTGCTGCCACAACCCTTGGTCCGGATGGG
131 CCACTACCGGTCCTGCTGACACAACCCTCGATCCAGATCAA
* *
15191227 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATAAGCGTGCGGGTGCTCA
* * * * * *
15191291 GCTAGCCGGAGAGGCAGAATACGTAAGCCGTGGATCGGCCCGATCCCCCT-TACATGCTGTCGAT
65 GCCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCAGTCAAT
* * * * **
15191355 CCTACTGCTGGTCCTGCT-ACAGCAACCCTCGATTCATTTCAA
130 CCCACTACCGGTCCTGCTGACA-CAACCCTCGATCCAGATCAA
*
15191397 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
15191425 TTAGACATGG
Statistics
Matches: 161, Mismatches: 34, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
169 3 0.02
170 60 0.37
171 97 0.60
172 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATAAGCGTGCGGGTGCTCAG
CCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCAGTCAATC
CCACTACCGGTCCTGCTGACACAACCCTCGATCCAGATCAA
Found at i:15191476 original size:26 final size:26
Alignment explanation
Indices: 15191398--15191468 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
15191388 TCATTTCAAT
15191398 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15191424 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
15191450 CTTAGACATGGAATGAACT
1 CTTAGACATGGAATGAACT
15191469 TTGTATGCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15191756 original size:159 final size:158
Alignment explanation
Indices: 15191453--15191866 Score: 506
Period size: 159 Copynumber: 2.6 Consensus size: 158
15191443 CCATATGCTT
** * * * *
15191453 AGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCATCCGA
1 AGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGCACTCAGCCGG
* * * * * *
15191518 TCGGAGAGGCAGAATGTGCAAGCCAGGGACCGGCCCGGTCCCCCCCTGCGTGCTGTCGATCCTGC
65 TCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCCTGCATGCTGCCGATCCTGC
* * *
15191583 TGCCGCAACCCTCGGTCTGGTCCGATCTC
130 TGCCACAACACTCGGTCTGGTCCGAGCTC
* *
15191612 AGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTCAGCCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGCACTCAGCCG
* * *
15191676 GTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGGTCCTG
64 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCCTGCATGCTGCCGATCCTG
** * *
15191741 CTGCCACAACACTCGGTCTGGTTGGGGCTT
129 CTGCCACAACACTCGGTCTGGTCCGAGCTC
* * *
15191771 AGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAATGGGCGTGCGGGCACTCAGCAGG
1 AGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTGCGGGCACTCAGCCGG
* * * *
15191836 CCAGAGAGGCAGAGTGCACAAGCCGGGGATC
65 TCGGAGAGGCAGAATGCGCAAGCCGGGGATC
15191867 GACCCGATCT
Statistics
Matches: 217, Mismatches: 35, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
158 2 0.01
159 214 0.99
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGT
CGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCCTGCATGCTGCCGATCCTGCT
GCCACAACACTCGGTCTGGTCCGAGCTC
Found at i:15194214 original size:159 final size:158
Alignment explanation
Indices: 15193858--15194637 Score: 591
Period size: 158 Copynumber: 4.8 Consensus size: 158
15193848 AACTCCGTAT
** *
15193858 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCGAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * ** ** * * *
15193923 CCGACCAAAGAGGCAGAAAGTGCAAGATGGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCC
66 CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
*** *
15193988 TGCTGCTGTAACCCTCAGTCCGGTCCGA
131 TGCTGCCACAACCCTCAGTCCGCTCCGA
* * * * * * *
15194016 TCTTAGAC-TAGGAATGAACTCCGTATACATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
15194080 CCCGGTCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGAT
65 GCCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGCCGAT
* * * *
15194145 CCCGCTGCCACAACCCTCGGTCCAGCT-GGG
129 CCTGCTGCCACAACCCTCAGTCC-GCTCCGA
* * * *
15194175 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
15194240 TCGATCGAAAAGGCAGAATGCACAAGTCGGGGATCGG-CCTAGTCCCCCCTGCGTGCTGTCGATC
66 CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGA-TCCCCCCTACGTGCTGCCGATC
* ** * *
15194304 CTGCTACCGTAACCCTCAGTCCGATCCAA
130 CTGCTGCCACAACCCTCAGTCCGCTCCGA
* * * * * * * * *
15194333 TCTTAGAC-TGGGGATGAACTTCGTATGCCTAGGTCAACCCTCAAAACGAGTGTGTGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * **
15194397 GCTGGTCGGAGAGGCATAATGCACAAGTCGGGGATAAGCCC-AGTCCCTCTCTGCGTGCTACCGA
65 GCCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGA-T-CC-C-C--C---CTA-CG-
* * * *
15194461 TCCCGCTGCCGATCCTACTGCCACAACCCTCGGTCCGGCT-GGG
119 T---GCTGCCGATCCTGCTGCCACAACCCTCAGTCC-GCTCCGA
* * * * * * *
15194504 GGTTAGACATAGAATGAACTCTGTATACCTAAGCCAACCCACGAAACAAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * * *
15194569 TCGGTCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCCGTCGATCC
66 CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
15194634 TGCT
131 TGCT
15194638 ACTGGTCCTG
Statistics
Matches: 477, Mismatches: 121, Indels: 48
0.74 0.19 0.07
Matches are distributed among these distances:
157 4 0.01
158 219 0.46
159 124 0.26
160 4 0.01
161 2 0.00
162 1 0.00
163 3 0.01
166 3 0.01
167 2 0.00
168 2 0.00
169 1 0.00
170 2 0.00
171 107 0.22
172 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
TGCTGCCACAACCCTCAGTCCGCTCCGA
Found at i:15194616 original size:329 final size:317
Alignment explanation
Indices: 15193858--15194639 Score: 929
Period size: 317 Copynumber: 2.4 Consensus size: 317
15193848 AACTCCGTAT
* * *
15193858 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCGAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
15193923 CCGACCAAAGAGGCAGAAAGTGCAAGATGGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCC
66 TCGATCGAAGAGGCAGAATGTGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
15193988 TGCTGCTGTAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATACATAAGTCAA
131 TGCTACCGTAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATACATAAGTCAA
* * **
15194053 CCCATGAAATGAGCGTGCGGGCGCTAACCCGGTCGAAGAGGCATAATGCACAAGCCGGGGATCGG
196 CCCATAAAACGAGCGTGCGGGCGCTAACCCGGTCGAAGAGGCATAATGCACAAGCCGGGGATAAG
*
15194118 CCCGATCCCCCTCTACGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCCAGCTGGG
261 CCCGATCCCCCTCTACGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCAGCTGGG
** * *
15194175 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* ** * **
15194240 TCGATCGAAAAGGCAGAATGCACAAGTCGGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATCC
66 TCGATCGAAGAGGCAGAATGTGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * * *
15194305 TGCTACCGTAACCCTCAGTCCGATCCAATCTTAGACTGGGGATGAACTTCGTATGCCTAGGTCAA
131 TGCTACCGTAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATACATAAGTCAA
* * * * * * *
15194370 CCC-TCAAAACGAGTGTGTGGGCGCTCAGCTGGTCGGAGAGGCATAATGCACAAGTCGGGGATAA
196 CCCAT-AAAACGAGCGTGCGGGCGCTAACCCGGTCGAAGAGGCATAATGCACAAGCCGGGGATAA
* *
15194434 GCCC-AGTCCCTCTCTGCGTGCTACCGATCCCGCTGCCGATCCTACTGCCACAACCCTCGGTCCG
260 GCCCGA-T-CC-C-C--C-T-CTA-CG-T---GCTGCCGATCCCACTGCCACAACCCTCGGTCCA
15194498 GCTGGG
312 GCTGGG
* * * * *
15194504 GGTTAGACATAGAATGAACTCTGTATACCTAAGCCAACCCACGAAACAAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
15194569 TCGGTCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCCGTCGATCC
66 TCGATCGAAGAGGCAGAATGTGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
15194634 TGCTAC
131 TGCTAC
15194640 TGGTCCTGCT
Statistics
Matches: 387, Mismatches: 64, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
316 2 0.01
317 221 0.57
318 2 0.01
319 1 0.00
320 1 0.00
322 1 0.00
323 1 0.00
324 3 0.01
325 2 0.01
326 1 0.00
329 152 0.39
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGATCGAAGAGGCAGAATGTGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCGTAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATACATAAGTCAA
CCCATAAAACGAGCGTGCGGGCGCTAACCCGGTCGAAGAGGCATAATGCACAAGCCGGGGATAAG
CCCGATCCCCCTCTACGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCAGCTGGG
Found at i:15195154 original size:159 final size:158
Alignment explanation
Indices: 15194701--15195154 Score: 468
Period size: 159 Copynumber: 2.9 Consensus size: 158
15194691 ACTCTGGATG
* *
15194701 CTTAGAAATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTCTAGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTC-GGGCGCTCAGC
* * * * *
15194766 CAGCCGGAGAGGTAGAGTGCACAAGT-CGGGGATCGACCCGATCCCCCCCTGTGTGCTGTCGATC
65 CAGCCGGAGAGGCAGAATGCGCAA-TCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATC
* * * * * *
15194830 TTGCTACTATAACCCTCGGTCCGGTCCAAT
129 CTGCTGCCACAACCCTCGGTCCGCTACAAT
* * * * * *
15194860 CATAGAC-TGGGAATTAACTTCGTAAGCCTAA-CTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGC-CAACCCATGAAACGAGCGT-CGGGCGCTCA
* * * *
15194923 GCCAGCCGGAGAGGCATAATGCGCAAGCCTGGGGATCGGCCCGAT-CCCCTCTGCGTGCTGTCGG
63 GCCAGCCGGAGAGGCAGAATGCGCAATCC-GGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGA
* *
15194987 TCCAGCTGCCACAACCCTCGGTCCGACTAC-GT
127 TCCTGCTGCCACAACCCTCGGTCCG-CTACAAT
* * *
15195019 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGT-CGGGCGCTCAGC
* * * * * * * **
15195084 AAACCGGAGAGGCAGAATGCGTAATCCGAGGATCGGCCTGGTCCCCCCCTACGTGCTACCGATCC
65 CAGCCGGAGAGGCAGAATGCGCAATCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
15195149 TGCTGC
130 TGCTGC
15195155 TGGTCCTGCT
Statistics
Matches: 237, Mismatches: 49, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
158 14 0.06
159 204 0.86
160 19 0.08
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTCGGGCGCTCAGCC
AGCCGGAGAGGCAGAATGCGCAATCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGCTACAAT
Found at i:15195374 original size:26 final size:26
Alignment explanation
Indices: 15195336--15195388 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15195326 GGCTCAAAAT
15195336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15195362 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15195388 C
1 C
15195389 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15195873 original size:26 final size:26
Alignment explanation
Indices: 15195837--15195889 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15195827 CTGGTCTGAT
15195837 CTTAGACTGGGAATAAACTACGTATG
1 CTTAGACTGGGAATAAACTACGTATG
* * *
15195863 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTACGTATG
15195889 C
1 C
15195890 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTACGTATG
Found at i:15196752 original size:41 final size:41
Alignment explanation
Indices: 15196694--15196773 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
15196684 GCAAGTCGGG
* *
15196694 GATCGGCCCGGTGCCCCCTTATGTG-TGTCGATCCTGCTGAC
1 GATCGGCCCGGT-CCCCCCTATGTGCTGTCAATCCTGCTGAC
* *
15196735 GATCGGCCTGGTCCCCCCTATGTGCTGTCAATCTTGCTG
1 GATCGGCCCGGTCCCCCCTATGTGCTGTCAATCCTGCTG
15196774 CTGGTCCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 11 0.32
41 23 0.68
ACGTcount: A:0.10, C:0.34, G:0.28, T:0.29
Consensus pattern (41 bp):
GATCGGCCCGGTCCCCCCTATGTGCTGTCAATCCTGCTGAC
Found at i:15198002 original size:26 final size:26
Alignment explanation
Indices: 15197964--15198015 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15197954 GGCTCAAACT
*
15197964 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15197990 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15198016 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15198342 original size:26 final size:26
Alignment explanation
Indices: 15198306--15198358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15198296 TCGGTTCAAT
15198306 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
15198332 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15198358 C
1 C
15198359 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15198544 original size:26 final size:26
Alignment explanation
Indices: 15198515--15198567 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15198505 CTGGTCCGAT
15198515 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15198541 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15198567 C
1 C
15198568 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15199203 original size:159 final size:157
Alignment explanation
Indices: 15198540--15199668 Score: 757
Period size: 159 Copynumber: 7.1 Consensus size: 157
15198530 AACTCCGTAT
* * * * *
15198540 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGTGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCC-CATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
** * * * * * * *
15198604 GTTGACCGGACAGGCAGAATAG-GCAAGCTGGGGA-CTAGCCCGATTCCTCCCTACGTGCTATCG
64 GCCGATCGGAGAGGCAAAAT-GCGCAAGCCGGGGATCGA-CCCGA-TCCCCCCTACGTGCTACCG
* ** *
15198667 ATCCTGCTGCCGCAACCCTCGGTCTAGTTCGA
126 ATCCTGCTGCCACAACCCTCGGTCCGGTTGGA
* * * ** * ** * *
15198699 TCTTAGACTAGGAATGAACTCCATATGCCTAAGTTAACCCATGAAATAAGCGTTCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCC-CATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** * * *
15198764 CC-AGTCGAAGAGGCAAAATGTGCAAGCCGGGGATC-AGCGTGGTCCCCCCTGCGTGCTGCC-AG
65 CCGA-TCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTACGTGCTACCGA-
** ** *
15198826 TCCCACTGCCACAACCCTCGGTCCGACTGGG
127 TCCTGCTGCCACAACCCTCGGTCCGGTTGGA
* * * *
15198857 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCC-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * *
15198921 GCCTA-CTGGAGAGGCAAAATACGCAAGCCAGGCATCGACCCGGT-CCCCCTACGTGCTACCAAT
64 GCCGATC-GGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCGAT
* *
15198984 CCTGCTGCCGCAACCCTCGGTCCAGTCT-GA
128 CCTGCTGCCACAACCCTCGGTCCGGT-TGGA
* * * * * * * * *
15199014 TCTTAGACTGGGAACGAATTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCACTGAG
1 GCTTAGACTGGGAATGAACTCC-CATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** *
15199079 CCGATTGGAGAGGCTTAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGATC
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTACCGATC
* * *
15199144 CTACTGCCACAACCCTCGGTCTGGTTGGG
129 CTGCTGCCACAACCCTCGGTCCGGTTGGA
* * **
15199173 GCTTAGACAT-GGAATGAAC-CCTGCATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCC--CATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * * * **
15199236 AACCGGTCGAAGAGGCAAAATGTC-CAAGCCGGGGATCGA-CCTAGTCCCCCCTGCATGCTGTCG
63 AGCCGATCGGAGAGGCAAAATG-CGCAAGCCGGGGATCGACCCGA-TCCCCCCTACGTGCTACCG
* *
15199299 ATCCTAC-GCCGCAACCCTCGGTCCGGTCT-GA
126 ATCCTGCTGCCACAACCCTCGGTCCGGT-TGGA
* * * * * * *
15199330 TCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCC-CATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *** *
15199395 CCGATCGGAGAGGCATAATACACAAGCCGAGGATC-AGCCAGGTCCCTCTCTACGTGCTGTTGGT
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGATCCC-CCCTACGTGCTACCGAT
* * ** *
15199459 CCTGCTGCCACAACCGTCGGTCTGACTGGG
128 CCTGCTGCCACAACCCTCGGTCCGGTTGGA
* * * * * * *
15199489 GCTTGGACAT-GGAATGAACTCCCTTTGCCTAAGCCAACCCACGAAATGGGTGTGTGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCC-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * ** * * *
15199553 GCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCCCTCCTGTGAGCCACCAATC
64 GCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATC
* *
15199618 CTGCTGCCACAACCCTCGGTCCAGTCT-AA
129 CTGCTGCCACAACCCTCGGTCCGGT-TGGA
*
15199647 TCTTAGACTGGGAATGAACTCC
1 GCTTAGACTGGGAATGAACTCC
15199669 ATTTGCTTAG
Statistics
Matches: 747, Mismatches: 187, Indels: 73
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.01
157 222 0.30
158 214 0.29
159 302 0.40
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCT
GCTGCCACAACCCTCGGTCCGGTTGGA
Found at i:15199256 original size:316 final size:315
Alignment explanation
Indices: 15198540--15199668 Score: 1229
Period size: 316 Copynumber: 3.6 Consensus size: 315
15198530 AACTCCGTAT
* ** *
15198540 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCAG
** ** * * * * * * * * *
15198605 TTGACCGGACAGGCAGAATAGGCAAGCTGGGGA-CTAGCCCGATTCCTCCCTACGTGCTATCGAT
66 CCGGTCGGAGAGGCAAAATACGCAAGCCGGGGATCGA-CCTG-GTCC-CCCTACGTGCTACCAAT
* * *
15198669 CCTGCTGCCGCAACCCTCGGTCTAGT-TCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGT
128 CCTGCTGCCGCAACCCTCGGTCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
15198733 TAACCCATGAAATAAGCGTTCGGGCACTGAGCC-AGTCGAAGAGGCAAAATGTGCAAGCCGGGGA
192 CAACCCACGAAATGAGCGTTCGGGCACTGAGCCGA-TCGGAGAGGCATAATGCGCAAGCC-GGGA
** * * *
15198797 TCAGCGTGGTCCCCC-CTGCGTGCTGCC-AGTCCCACTGCCACAACCCTCGGTCCGACTGGG
255 TCAGCCAGGTCCCCCTCTACGTGCTGCCGA-TCCTACTGCCACAACCCTCGGTCTGACTGGG
15198857 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCAG
* * *
15198922 CC--TACTGGAGAGGCAAAATACGCAAGCCAGGCATCGACCCGGTCCCCCTACGTGCTACCAATC
66 CCGGT-C-GGAGAGGCAAAATACGCAAGCCGGGGATCGACCTGGTCCCCCTACGTGCTACCAATC
* *
15198985 CTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAACGAATTCCGTATGCCTAAGTCA
129 CTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15199050 ACCCACGAAATGAGCATGCAGGCACTGAGCCGATTGGAGAGGCTTAATGCGCAAGCCAGGGATC-
194 ACCCACGAAATGAGCGTTCGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCC-GGGATCA
* * * **
15199114 GACCCGATCCCCCTCTACGTGCTACCGATCCTACTGCCACAACCCTCGGTCTGGTTGGG
258 G-CCAGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGACTGGG
* * * *
15199173 GCTTAGACATGGAATGAA--CCCTGCATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTC
1 GCTTAGACATGGAATGAACTCCCT--ATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTC
* * * * * * ** *
15199236 AACCGGTCGAAGAGGCAAAATGTC-CAAGCCGGGGATCGACCTAGTCCCCCCTGCATGCTGTCGA
64 AGCCGGTCGGAGAGGCAAAAT-ACGCAAGCCGGGGATCGACCTGGT-CCCCCTACGTGCTACCAA
* * *
15199300 TCCTAC-GCCGCAACCCTCGGTCCGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGT
127 TCCTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
15199364 CAACCCACGAAACGAGTGTTCGGGCACTGAGCCGATCGGAGAGGCATAATACACAAGCCGAGGAT
192 CAACCCACGAAATGAGCGTTCGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCG-GGAT
* ** * * *
15199429 CAGCCAGGTCCCTCTCTACGTGCTGTTGGTCCTGCTGCCACAACCGTCGGTCTGACTGGG
256 CAGCCAGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGACTGGG
* * * * * *
15199489 GCTTGGACATGGAATGAACTCCCTTTGCCTAAGCCAACCCACGAAATGGGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCAG
* * * * ** * *
15199554 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCCCTCCTGTGAGCCACCAATCC
66 CCGGTCGGAGAGGCAAAATACGCAAGCCGGGGATCGACCTGGTCCC-CCTACGTGCTACCAATCC
* *
15199619 TGCTGCCACAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTCC
130 TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
15199669 ATTTGCTTAG
Statistics
Matches: 679, Mismatches: 112, Indels: 42
0.82 0.13 0.05
Matches are distributed among these distances:
314 5 0.01
315 137 0.20
316 380 0.56
317 150 0.22
318 7 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCAG
CCGGTCGGAGAGGCAAAATACGCAAGCCGGGGATCGACCTGGTCCCCCTACGTGCTACCAATCCT
GCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATGAGCGTTCGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGATCAGCC
AGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGACTGGG
Found at i:15199627 original size:474 final size:473
Alignment explanation
Indices: 15198540--15199670 Score: 1171
Period size: 474 Copynumber: 2.4 Consensus size: 473
15198530 AACTCCGTAT
* *
15198540 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGGGCGCTCAG
** * * * * * * *
15198605 TTGACCGGACAGGCAGAATAG-GCAAGCTGGGGA-CTAGCCCGATTCCTCCCTACGTGCTATCGA
66 CCGATCGGAGAGGCAGAAT-GCGCAAGCCGGGGATCGA-CCCGATCCCT-CCTATGTGCTACCGA
* * *
15198668 TCCTGCTGCCGCAACCCTCGGTCTAGTTCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGT
128 TCCTGCTGCCACAACCCTCGGTCTAGTTCGAGCTTAGACTAGGAATGAACTCCATATGCCTAAGC
* * * * * *
15198733 TAACCCATGAAATAAGCGTTCGGGCACTGAGCCAGTCGAAGAGGCAAAATGTGCAAGCCGGGGAT
193 CAACCCATGAAACAAGCGTGCGGGCACTCAACCAGTCGAAGAGGCAAAATGTCCAAGCCGGGGAT
* * * *
15198798 CAGCGTGGTCCCCCCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAG
258 CAGCCTAGTCCCCCCTGCATGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGAGCTTAG
* * *
15198863 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGAGTGTGGGCGCTCAGCCTACT
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGTGGGCACTCAGCCGACT
* *
15198928 GGAGAGGCAAAATACGCAAGCCAGGCATCGACCCGGTCCCCCTACGTGCTACCAATCCTGCTGCC
388 GGAGAGGCAAAATACACAAGCCAGGCATCGACCAGGTCCCCCTACGTGCTACCAATCCTGCTGCC
* *
15198993 GCAACCCTCGGTCCAGTCTGA
453 ACAACCCTCGGTCCAGACTGA
* * * * ** ** * *
15199014 TCTTAGAC-TGGGAACGAATTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGGGCGCTCA
* ** * * *
15199078 GCCGATTGGAGAGGCTTAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTACCGAT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCTC-CTATGTGCTACCGAT
* * * *
15199143 CCTACTGCCACAACCCTCGGTCTGGTTGGGGCTTAGAC-ATGGAATGAAC-CC-TGCATGCCTAA
129 CCTGCTGCCACAACCCTCGGTCTAGTTCGAGCTTAGACTA-GGAATGAACTCCAT--ATGCCTAA
** *
15199205 GCCAACCCATGAAACAAGCGTGCGGGTGCTCAACCGGTCGAAGAGGCAAAATGTCCAAGCCGGGG
191 GCCAACCCATGAAACAAGCGTGCGGGCACTCAACCAGTCGAAGAGGCAAAATGTCCAAGCCGGGG
* * * * *
15199270 ATC-GACCTAGTCCCCCCTGCATGCTGTC-GATCCTAC-GCCGCAACCCTCGGTCCGGTCT-GAT
256 ATCAG-CCTAGTCCCCCCTGCATGCTGCCAG-TCCCACTGCCACAACCCTCGGTCC-GACTGGAG
* * * * *
15199331 CTTGGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGT-TCGGGCACTGA
318 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGT-GGGCACTCA
* ***
15199394 GCCGA-TCGGAGAGGCATAATACACAAGCCGAGG-ATC-AGCCAGGTCCCTCTCTACGTGCTGTT
381 GCCGACT-GGAGAGGCAAAATACACAAGCC-AGGCATCGA-CCAGGTCCC-C-CTACGTGCTACC
** * * *
15199456 GGTCCTGCTGCCACAACCGTCGGT-CTGACTGGG
441 AATCCTGCTGCCACAACCCTCGGTCCAGACT-GA
* * * *
15199489 GCTTGGACATGGAATGAACTCCCTTTGCCTAAGCCAACCCACGAAATGGGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGGGCGCTCAG
* * * * * * *
15199554 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCCCTCCTGTGAGCCACCAATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCTCCTATGTGCTACCGATCC
* * * *
15199619 TGCTGCCACAACCCTCGGTCCAG-TCTAATCTTAGACTGGGAATGAACTCCAT
131 TGCTGCCACAACCCTCGGTCTAGTTC-GAGCTTAGACTAGGAATGAACTCCAT
15199671 TTGCTTAGAC
Statistics
Matches: 528, Mismatches: 106, Indels: 44
0.78 0.16 0.06
Matches are distributed among these distances:
472 5 0.01
473 113 0.21
474 285 0.54
475 123 0.23
476 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (473 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCTCCTATGTGCTACCGATCC
TGCTGCCACAACCCTCGGTCTAGTTCGAGCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
CCCATGAAACAAGCGTGCGGGCACTCAACCAGTCGAAGAGGCAAAATGTCCAAGCCGGGGATCAG
CCTAGTCCCCCCTGCATGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGAGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGTGGGCACTCAGCCGACTGGA
GAGGCAAAATACACAAGCCAGGCATCGACCAGGTCCCCCTACGTGCTACCAATCCTGCTGCCACA
ACCCTCGGTCCAGACTGA
Found at i:15200752 original size:26 final size:26
Alignment explanation
Indices: 15200711--15200763 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15200701 CCAGTTCGAT
15200711 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
15200737 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15200763 C
1 C
15200764 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15200959 original size:26 final size:26
Alignment explanation
Indices: 15200921--15200973 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15200911 CCAATCCAAT
15200921 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15200947 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15200973 C
1 C
15200974 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15201964 original size:171 final size:171
Alignment explanation
Indices: 15201679--15201995 Score: 517
Period size: 171 Copynumber: 1.9 Consensus size: 171
15201669 ATCCTACTGC
* *
15201679 CGCAACCCTCGGTCCGATCTCATCTTAGACTGGGACTGAACTCCGTATGCCTAAGTCAACCCATG
1 CGCAACCCTCCGTCCGATCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
* *
15201744 AAACGAGTGTGCAAGCGCTGAGCCGGCCGGAGAGGTATAATGCGCAAGCTGGGGATCGACCCGAT
66 AAACGAGTGTGCAAGCGCTGAGCCAGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGAT
15201809 CCCCTTCTGTGTGCTGCCAATCCTACTGCTGGTCCTGTTGT
131 CCCCTTCTGTGTGCTGCCAATCCTACTGCTGGTCCTGTTGT
* * * *
15201850 CGCAACCCTCCGTCTGATCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATG
1 CGCAACCCTCCGTCCGATCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
* * * * *
15201915 AAATGAGTGTGTAGGCGCTGAGCCAGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGAT
66 AAACGAGTGTGCAAGCGCTGAGCCAGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGAT
15201980 CCCCTTCTGTGTGCTG
131 CCCCTTCTGTGTGCTG
15201996 TCGATCCCAC
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
171 133 1.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (171 bp):
CGCAACCCTCCGTCCGATCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
AAACGAGTGTGCAAGCGCTGAGCCAGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGAT
CCCCTTCTGTGTGCTGCCAATCCTACTGCTGGTCCTGTTGT
Found at i:15203284 original size:26 final size:26
Alignment explanation
Indices: 15203255--15203305 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15203245 CTGGTTCGAT
*
15203255 CTTAGA-TTGGGAATGAACTCTGTATA
1 CTTAGACTGGGGAA-GAACTCTGTATA
15203281 CTTAGACTGGGGAAGAACTCTGTAT
1 CTTAGACTGGGGAAGAACTCTGTAT
15203306 GCCTACATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCTGTATA
Found at i:15204032 original size:26 final size:26
Alignment explanation
Indices: 15203991--15204046 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15203981 CCGATCCAAT
*
15203991 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15204017 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15204043 CTTA
1 CTTA
15204047 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15204141 original size:184 final size:184
Alignment explanation
Indices: 15203941--15204570 Score: 659
Period size: 184 Copynumber: 3.4 Consensus size: 184
15203931 CGACCCAGTT
*
15203941 CCCCCTGCATGCTACCGATCCTGCTACT-GCAACCCTCGATCCGATCCAATCTTAGACTGGGAAT
1 CCCCCTGCATGCTACCGATCCTGCT-CTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAAT
* *
15204005 GAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCTTAAGCCAACCCACGAAACGGGCGTG
65 GAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
* **
15204070 CGGGTGCTCAGTCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGACCAGCCCGGTC
130 CGGGCGCTCAGTCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGACCAGCATGGTC
* * * * *
15204125 CCCCTTGCATGCTACCGATCCTGTTGC-CGCAACCCTTGGTCCGATTCGATCTTAGACTGGGAAT
1 CCCCCTGCATGCTACCGATCCTGCT-CTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAAT
* * * * * * *
15204189 GCACTCCGTATGCTTAGACTGGGGATAAACTTCGTATGCGTAAGTCAACCCACGAAACGAGCGTG
65 GAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
* * * * * * * *
15204254 CGGGCGCTCAATTGGTCGGAGAGGCAGAATACGCAAGCC-AGAGATC-GACATAGTCC
130 CGGGCGCTCAGTCGGCCGAAGAGGCAGAATGCGTAAGCCGAG-GACCAG-CATGGT-C
* * * * *
15204310 CCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTC-AGTCTGATCTGATCTTAGACTGGGAAT
1 CCCCCTGCATGCTACCGATCCTGCTCTCGCAACCCTCGA-TCCGATCCGATCTTAGACTGGGAAT
* *
15204374 GAACT-TCGTATGCTTAGAC-ATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
65 GAACTCT-GTATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
** * * * *
15204437 TGCTAGCGCTCAG-CTGGCC-AGAGAGGCAGAATGCGTAAGTCGAGGACCAACTTGATC
128 TGCGGGCGCTCAGTC-GGCCGA-AGAGGCAGAATGCGTAAGCCGAGGACCAGCATGGTC
** * * * * * *
15204494 CCCCCTGTGTCCCATCGATCTTGCTGTCGCAACCCTCGATCC-AGTCCGATCTTAGACTAGGAAT
1 CCCCCTGCATGCTACCGATCCTGCTCTCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAAT
*
15204558 CAACTCTGTATGC
65 GAACTCTGTATGC
15204571 CTAAGTCAAC
Statistics
Matches: 362, Mismatches: 69, Indels: 30
0.79 0.15 0.07
Matches are distributed among these distances:
183 4 0.01
184 213 0.59
185 143 0.40
186 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (184 bp):
CCCCCTGCATGCTACCGATCCTGCTCTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATG
AACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
GGGCGCTCAGTCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGACCAGCATGGTC
Found at i:15204224 original size:26 final size:26
Alignment explanation
Indices: 15204175--15204227 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15204165 CCGATTCGAT
**
15204175 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
15204201 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15204227 C
1 C
15204228 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15204392 original size:185 final size:181
Alignment explanation
Indices: 15203832--15204480 Score: 658
Period size: 184 Copynumber: 3.5 Consensus size: 181
15203822 TTCGACTTGG
* * * * * * ** *
15203832 GCTTAGACATGGAATGCACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGTACGGGCAATTAG
1 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
15203897 CCGGTCAGACAGGCAGAATGCGCAAGCCGGGAATCGACCCAGTTCCCCCTGCATGCTACCGATCC
65 TTGGCCGGAGAGGCAGAATGCGCAAGCCGAG-ATCGACCCAGTCCCCCCTGCATGCTACCGATCC
**
15203962 TGCT-ACTGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAAC-TCTGTAT
129 TGCTGAC-GCAACCCTCG-TCCGATCTGATCTTAGACTGGGAATGAACTTC-GTAT
* * *
15204016 GCTTAGACTAGGGATGAACTCCGTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
15204081 TCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGA-CCAGCCCGGTCCCCCTTGCATGCTACCGATC
65 TTGGCCGGAGAGGCAGAATGCGCAAGCCGA-GATCGA-CCCAGTCCCCCCTGCATGCTACCGATC
* * * * *
15204145 CTGTTGCCGCAACCCTTGGTCCGAT-TCGATCTTAGACTGGGAATGCACTCCGTAT
128 CTGCTGACGCAACCC-TCGTCCGATCT-GATCTTAGACTGGGAATGAACTTCGTAT
* * * * *
15204200 GCTTAGACTGGGGATAAACTTCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
15204265 TTGGTCGGAGAGGCAGAATACGCAAGCCAGAGATCGACATAGTCCCCCCCTGCGTGCTGCCGATC
65 TTGGCCGGAGAGGCAGAATGCGCAAGCC-GAGATCGACCCAGT-CCCCCCTGCATGCTACCGATC
* *
15204330 CTGCTGTCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTAT
128 CTGCTGACGCAACCCTC-GTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
* * **
15204385 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCTAGCGCTCAG
1 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15204450 CTGGCCAGAGAGGCAGAATGCGTAAGTCGAG
65 TTGGCCGGAGAGGCAGAATGCGCAAGCCGAG
15204481 GACCAACTTG
Statistics
Matches: 383, Mismatches: 69, Indels: 26
0.80 0.14 0.05
Matches are distributed among these distances:
183 3 0.01
184 230 0.60
185 148 0.39
186 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (181 bp):
GCTTAGACTGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
TGGCCGGAGAGGCAGAATGCGCAAGCCGAGATCGACCCAGTCCCCCCTGCATGCTACCGATCCTG
CTGACGCAACCCTCGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:15204398 original size:26 final size:26
Alignment explanation
Indices: 15204360--15204412 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15204350 CTGATCTGAT
*
15204360 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15204386 CTTAGACAT-GGAATGTACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15204412 C
1 C
15204413 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15204897 original size:26 final size:26
Alignment explanation
Indices: 15204861--15204913 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15204851 CTGGTCTGAT
*
15204861 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15204887 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15204913 C
1 C
15204914 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15205266 original size:26 final size:26
Alignment explanation
Indices: 15205227--15205279 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15205217 CCGACCTAAT
15205227 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
*
15205253 CTTAGACATG-GAATGAACTTTGTATG
1 CTTAGAC-TGAGAATGAACTTCGTATG
15205279 C
1 C
15205280 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:15205427 original size:184 final size:184
Alignment explanation
Indices: 15205068--15205437 Score: 422
Period size: 184 Copynumber: 2.0 Consensus size: 184
15205058 TCCGGTTGGG
* * **
15205068 GCTTAGACATGGAATGAACTCCATATGCCTAAGCGAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACCGTGCGGGCACTCAG
* * ** * * ** * *
15205133 CCGGTCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGATCCCCCCTGTATGCTGTCGATCG
66 CCGGTCAGAAAGGCAGAATACGCAACACGGGGACCGACCCGATCCCCCCTACATGCTATCGATCC
* * * *
15205198 TGCTGCCGTAACCCTCGATCCGACCTAATCTTAGACTGAGAATGAACT-TCGTAT
131 TACTACCATAACCCTCGATCCGACCTAATCTGAGACTGAGAATGAACTCT-GTAT
*** * *
15205252 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATTAAATGACCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACCGTGCGGGCACTCAG
* * * *
15205317 CTGGTCAGAAAGGCAGAATGCGCAACACGGGGACCGACCCGGTCCCCCCTACGTGCTATCGATCC
66 CCGGTCAGAAAGGCAGAATACGCAACACGGGGACCGACCCGATCCCCCCTACATGCTATCGATCC
** *
15205382 TACTACCATAACCCTC-AGTCCGGTCTGATCTGAGACT-AGGAATGAACTCTGTAT
131 TACTACCATAACCCTCGA-TCCGACCTAATCTGAGACTGA-GAATGAACTCTGTAT
15205436 GC
1 GC
15205438 CTAAGTCAAC
Statistics
Matches: 153, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
183 2 0.01
184 150 0.98
185 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACCGTGCGGGCACTCAG
CCGGTCAGAAAGGCAGAATACGCAACACGGGGACCGACCCGATCCCCCCTACATGCTATCGATCC
TACTACCATAACCCTCGATCCGACCTAATCTGAGACTGAGAATGAACTCTGTAT
Found at i:15207017 original size:26 final size:26
Alignment explanation
Indices: 15206976--15207028 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15206966 NNNNNTAGAT
15206976 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15207002 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
15207028 C
1 C
15207029 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15207532 original size:26 final size:26
Alignment explanation
Indices: 15207488--15207537 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15207478 CTGGTTCGAT
*
15207488 CTTAGACTGGGAATGAACTCCATAAG
1 CTTAGACTGGGAATAAACTCCATAAG
15207514 CTTAGACT-GGAGATAAACTCCATA
1 CTTAGACTGGGA-ATAAACTCCATA
15207538 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATAAG
Done.