Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 94 of 138
Found at i:15208045 original size:159 final size:155
Alignment explanation
Indices: 15207665--15208111 Score: 370
Period size: 158 Copynumber: 2.8 Consensus size: 155
15207655 CTCGCTGTTG
* **
15207665 GTCTTGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAG
1 GTCTTGCTACCACAACCCTCGATCTGGCT-GGGCTTAGACATGGAATGAACTCCATATGCCTAAG
* * ** * * *
15207730 CCAACCCACGAAACGAGCGTATGGGTGCTTACCTGATCGGAGAGGTAGAATGCGTAAGCTGGGGA
65 -CAACCCACGAAATGAGCATATGGGCACTGACCTGATCGGAGAGGTAGAATGCGTAAGCCGAGGA
** * * * * *
15207795 CTGGCTCAGTCCCTCCTGCGTGCTGTT
129 CTAACCCAGTCCCCCCTGCGTACTATA
* ** ** *
15207822 GATCTTGCTATCGTAACCCTCGAT-TCGGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCT
1 G-TCTTGCTACCACAACCCTCGATCT-GG-CTGGGCTTAGACAT-GGAATGAACTCCATATGCCT
* *
15207885 AAGTCAACCCACGAAATGAGCAT-TCGGGCACTGAGCT-AGTCGGAGAGGTATAATGCGTAAGCC
62 AAG-CAACCCACGAAATGAGCATAT-GGGCACTGACCTGA-TCGGAGAGGTAGAATGCGTAAGCC
*
15207948 GAGGA-TCAACCCGGTCCCCCTCTGCGTACTATCA
124 GAGGACT-AACCCAGTCCCCC-CTGCGTACTAT-A
*
15207982 GTCTGGCTACCACAACCCTCGATCTGGCTAGGGCTTAGACATGGAATGAACTTCC-TATGCCTAA
1 GTCTTGCTACCACAACCCTCGATCTGGCT-GGGCTTAGACATGGAATGAAC-TCCATATGCCTAA
* * ** * * * *
15208046 GCAAACCCACAAAATGGGTGTGTGGATGCTC-AACC-GATCGGAGAGGCAGAATGCGTAAGCCGA
64 GC-AACCCACGAAATGAGCATATGG--GCACTGACCTGATCGGAGAGGTAGAATGCGTAAGCCGA
15208109 GGA
126 GGA
15208112 TCCATTGCTG
Statistics
Matches: 230, Mismatches: 42, Indels: 34
0.75 0.14 0.11
Matches are distributed among these distances:
157 5 0.02
158 111 0.48
159 101 0.44
160 10 0.04
161 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (155 bp):
GTCTTGCTACCACAACCCTCGATCTGGCTGGGCTTAGACATGGAATGAACTCCATATGCCTAAGC
AACCCACGAAATGAGCATATGGGCACTGACCTGATCGGAGAGGTAGAATGCGTAAGCCGAGGACT
AACCCAGTCCCCCCTGCGTACTATA
Found at i:15209042 original size:708 final size:704
Alignment explanation
Indices: 15207697--15209704 Score: 2383
Period size: 708 Copynumber: 2.9 Consensus size: 704
15207687 TCCAGCTGGG
* * *
15207697 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTATG-GGTGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG--TGCGGCGCTCA
* * * ** * * *
15207761 CCTGATCGGAGAGGTAGAATGCGTAAG-CTGGGGACTGGCTCAGTCCCT-CCTGCGTGCTGTTGA
64 -GTCAACGGAGAGGTAGAATGCACAAGTC-GGGGACTGGCCCAGTCCCTCCCTGCGTGCTATCGA
* * * *
15207824 TCTTGCTA-TCGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
127 TCATGCTACT-GCAACCCTCGATTCGGTCCGATGTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
15207888 TCAACCCACGAAATGAGCATTCGGGCACTGAGCTAGTCGGAGAGGTATAATGCGTAAGCCGAGGA
191 TCAACCCACGAAATGAGCATTCGGGCACTGAGCTGGTCGGAGAGGCATAATGCGCAAGCCGAGGA
* * * ** * * *
15207953 TCAACCCGGTCCCCCTCTGCGTACTATCAGTCTGGCTACCACAACCCTCGATCTGGCTAGGGCTT
256 TCGACCCGATCCCCCTCTGCGTGCTATCAGTCCCGCTGCCACAACCCTCGTTC-GGCTGGGGCTT
* * * * * **
15208018 AGACATGGAATGAACTTCCTATGCCTAAGCAAACCCACAAAATGGGTGTGT-GGATGCTCAACCG
320 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGA-GCTCAGTCG
* * * * *
15208082 ATCGGAGAGGCAGAATGCGTAAGCCGAGGAT----CC-AT-----TGCTG--TCAAT-CTTGCTA
384 GTCGGAGAGGTAGAATGCGCAAGCCG-GGATCAGCCCGATCCCCCTGCTGCTTCGATCCTT-CTG
* * *
15208134 CCGTAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAAGC-CTATATGCTTAGACTGGGGAT
447 CTGTAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAA-CTCTATATGCTTAGACTGGGGAT
* * * * * *
15208198 GAACTCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTATGGGCGCTCAGCCAGTCGGAGAGGCC
511 GAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAGCCAGTCGAAGAGGCC
* * * * *
15208263 GATCGGAGAGGCAGAATGTGCAAGCCAGGGATTAACCCGATCCCCCCTGCGTGCTGTCGATCCTG
576 GATCGGAGAGGCATAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTGCCGATCCTA
* * *
15208328 CTGCTGGTCTTACAGTCGTAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTAT
641 CTGCTGGTCCTACAGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
15208392 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAG
* * *
15208457 TCAACGAGAGAGGTTGAATGCACAAGTCGGGGACCGACCCAGTCCCTCCCTGCGTGCTATCGATC
65 TCAACG-GAGAGGTAGAATGCACAAGTCGGGGACTGGCCCAGTCCCTCCCTGCGTGCTATCGATC
* * * * * *
15208522 CTGCTACTGCAACCCTCGGTTTGATCCGATGTTACATTGGGAATGAACTCCGTATGCCTAAGTCA
129 ATGCTACTGCAACCCTCGATTCGGTCCGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *** *
15208587 ACCCACGAAACGAACGCGCGGGC-CTGAGCTGGTCGGAGAGGCATAATGCGCAAGCCGAGAATCG
194 ACCCACGAAATGAGCATTCGGGCACTGAGCTGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCG
* * * *
15208651 GCCCGATCCCCCTCTACGTGCTACCTGTCCCGCTGCCACAACCCTCTGTTCGGCTGGGGCTTAGA
259 ACCCGATCCCCCTCTGCGTGCTATCAGTCCCGCTGCCACAACCCTC-GTTCGGCTGGGGCTTAGA
* * *
15208716 GAT-GAATGAACTCCCTATTCCTAGGCCAACCCACGAAACGGGCGTGTGGGAGCTCAGTCGGTCG
323 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGAGCTCAGTCGGTCG
*
15208780 GAGAGGTAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTGCATGCTATCGATCCTTCTGCTG
388 GAGAGGTAGAATGCGCAAGCC-GGGATCAGCCCGATCCCCCTGC-TGCT-TCGATCCTTCTGCTG
* *
15208845 TAACCCTCTATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
450 TAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAAC
* * * *
15208910 TCTGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGGGCTCAGTCAGTCGAAGAGGCCGACC
515 TCTGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAGCCAGTCGAAGAGGCCGATC
* * *
15208975 GGAGAGGCATAATGCGTAAGTCAGGGATCAACCCGATCTCCCCTGCGTGCTGCCGATCCTACTGC
580 GGAGAGGCATAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTGCCGATCCTACTGC
* * * *
15209040 TGGTCCTACTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
645 TGGTCCTACAGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
*
15209100 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-CGCTCAG
* * **
15209165 TCGACCGGAGAGGAAGAATGCACAAGTCAAGGACTGGCCC-GATCACC-CCCTGCGTGCTATCGA
65 TC-AACGGAGAGGTAGAATGCACAAGTCGGGGACTGGCCCAG-TC-CCTCCCTGCGTGCTATCGA
* * * *
15209228 TCATGCTGCCT-CAACCCTCAATCCGGTCCGATGTTAGACTGAGAATGAACTCCGTATGCCTAAG
127 TCATGCT-ACTGCAACCCTCGATTCGGTCCGATGTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * **
15209292 TCAACCCATGAAATGAGCATTTGAGCACTGAGCCGATCGGAGAGACATAATGCACAAATCGAGGA
191 TCAACCCACGAAATGAGCATTCGGGCACTGAGCTGGTCGGAGAGGCATAATGCGCAAGCCGAGGA
* * * * * * *
15209357 TCGACTCGATCCCCCTCTGTGTGCTGTCAGTACCGCTGCCACAACCCTCGGTCCGACTGGGGTTT
256 TCGACCCGATCCCCCTCTGCGTGCTATCAGTCCCGCTGCCACAACCCTC-GTTCGGCTGGGGCTT
* * *
15209422 AGACTTGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGGGCGTGTGGGAGCTCAGTCGG
320 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGAGCTCAGTCGG
* * * * *
15209487 CCGGAGAGGTAGAATACGCAAGCTGGGGATCAGCCCGATCCCCCTGTGTGCTGTCGATCCTACTG
385 TCGGAGAGGTAGAATGCGCAAGC-CGGGATCAGCCCGATCCCCCTG-CTGCT-TCGATCCTTCTG
* * * *
15209552 CTGCAACCATCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTAAGACTAGGGATG
447 CTGTAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGGATG
* * * *
15209617 AACTCTGTATGCCTACGTCAACCCACGAAACGAGCATGTGGGCACTCAGCCGGCCAGAA-AGGCC
512 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAGCCAGTC-GAAGAGGCC
* *
15209681 AATCGGAGAGGCATAATGCACAAG
576 GATCGGAGAGGCATAATGCGCAAG
15209705 TCGAGGGTCA
Statistics
Matches: 1110, Mismatches: 168, Indels: 55
0.83 0.13 0.04
Matches are distributed among these distances:
693 2 0.00
694 73 0.07
695 179 0.16
696 91 0.08
697 1 0.00
698 2 0.00
699 2 0.00
704 3 0.00
705 2 0.00
707 4 0.00
708 408 0.37
709 98 0.09
710 242 0.22
711 3 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (704 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGT
CAACGGAGAGGTAGAATGCACAAGTCGGGGACTGGCCCAGTCCCTCCCTGCGTGCTATCGATCAT
GCTACTGCAACCCTCGATTCGGTCCGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATGAGCATTCGGGCACTGAGCTGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGAC
CCGATCCCCCTCTGCGTGCTATCAGTCCCGCTGCCACAACCCTCGTTCGGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGAGCTCAGTCGGTCGGAG
AGGTAGAATGCGCAAGCCGGGATCAGCCCGATCCCCCTGCTGCTTCGATCCTTCTGCTGTAACCC
TCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTA
TGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAGCCAGTCGAAGAGGCCGATCGGAGAG
GCATAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCC
TACAGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15209104 original size:26 final size:26
Alignment explanation
Indices: 15209075--15209127 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15209065 CCGGTCTGAT
15209075 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15209101 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15209127 C
1 C
15209128 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15209617 original size:26 final size:26
Alignment explanation
Indices: 15209579--15209628 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15209569 GTCTGATCTT
15209579 AGACTGGGAATGAACTCTATATGCTA
1 AGACTGGGAATGAACTCTATATGCTA
*
15209605 AGACTAGGG-ATGAACTCTGTATGC
1 AGACT-GGGAATGAACTCTATATGC
15209629 CTACGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTATATGCTA
Found at i:15210833 original size:26 final size:26
Alignment explanation
Indices: 15210804--15210856 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15210794 GAAGTTTGAT
15210804 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15210830 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15210856 C
1 C
15210857 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15211017 original size:26 final size:26
Alignment explanation
Indices: 15210988--15211040 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15210978 TCGATCCAAT
*
15210988 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15211014 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15211040 C
1 C
15211041 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15211333 original size:171 final size:161
Alignment explanation
Indices: 15211151--15211633 Score: 456
Period size: 159 Copynumber: 2.9 Consensus size: 161
15211141 TCTCACTGTC
* * * *
15211151 GGTCTTGCTGCCATAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 GGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * *
15211216 GCCAACCCATGAAACGAATGTACGGGAGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGGGG
66 GCCAACCCATGAAACGAATGTACGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGG
15211281 ATCGACCCAGTCCCCCCCTGCGTGTTGTCGATCCTATTACT
131 ATCGACCC-GT-CCCCCCTGCGTG-TGT-G---C---TACT
* * * * ** *
15211322 GGTCCTGCTGCCGCAACCCTCGGTC-CGATCCGATCTTAG-CCTGGGAATGAACTCCATATGCCT
1 GGTCCTGCTGCCACAACCCTCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCCATATGCCT
** * * * * * * *
15211385 AAGTGAACCCATGAAACGAGTGTGCTGGTGCTGAGCTGATCGGAGAGGAATAATGCGCAAGCCGG
64 AAGCCAACCCATGAAACGAATGTACGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGG
* **
15211450 GGATAGGTCCGAT-CCCCCT-C-TGTGTGCTACT
129 GGATCGACCCG-TCCCCCCTGCGTGTGTGCTACT
** * * *
15211481 GGTCCCACTGCCACAACCCTCAGT-TCGGCTGGGGCTTAGACATGAAATGAACTCCCTATGCCTA
1 GGTCCTGCTGCCACAACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
* * * * *
15211545 AGCCAACCCACGAAAGGGACGTACGGGTGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGG
65 AGCCAACCCATGAAACGAATGTACGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGG
15211610 GATCGACCCGGTCCCCCCTGCGTG
130 GATCGACCC-GTCCCCCCTGCGTG
15211634 CTGCTGATCC
Statistics
Matches: 246, Mismatches: 56, Indels: 29
0.74 0.17 0.09
Matches are distributed among these distances:
159 107 0.43
160 11 0.04
161 1 0.00
162 3 0.01
165 1 0.00
166 3 0.01
167 2 0.01
168 1 0.00
169 6 0.02
170 5 0.02
171 106 0.43
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (161 bp):
GGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAA
GCCAACCCATGAAACGAATGTACGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGG
ATCGACCCGTCCCCCCTGCGTGTGTGCTACT
Found at i:15211703 original size:26 final size:26
Alignment explanation
Indices: 15211674--15211724 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15211664 CGGTCTGATC
* *
15211674 TTAGAATGGGAATGAGCTCTGTATGG
1 TTAGAATGGGAATGAACTCCGTATGG
* *
15211700 TTAGACTGGGGATGAACTCCGTATG
1 TTAGAATGGGAATGAACTCCGTATG
15211725 CTTAACTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.29
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGG
Found at i:15211900 original size:26 final size:26
Alignment explanation
Indices: 15211871--15211923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15211861 CTGGTCCGAT
15211871 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15211897 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15211923 C
1 C
15211924 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15212033 original size:198 final size:197
Alignment explanation
Indices: 15211665--15212041 Score: 422
Period size: 198 Copynumber: 1.9 Consensus size: 197
15211655 CCCTCTGTAC
* * * * * *
15211665 GGTCTGATCTTAGAATGGGAATGAGCTCTGTATGGTTAGACTGGGGATGAACTCCGTATGCTTAA
1 GGTCCGATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * * *
15211730 CTTAACCCACGAAACGAGCATGCGGGCACTCAACCGACCGGAGAGGCCGGTCGGAGAGGCATAAT
66 CTCAACCCACGAAACGAGCATACGGGCACTCAACCGACCGGAGAGGCCAGTCGAAAAGGCAGAAT
* ** ** * *
15211795 GCATGAGCTGGGGATAAGTCTGGTCTACCTCTGTGTGCTACCGATCCTGTTGTCGCAACCCCTGG
131 GCA-GAGCTAGGGATAACCCTGCCCTACCTCTGCGTGCTACCAATCCTGTTGTCGCAACCCCTGG
15211860 TCT
195 TCT
*
15211863 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
1 GGTCCGATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * ** *
15211928 GTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGGCCAGTCGAAAAGGTAGAAT
66 CTCAACCCACGAAACGAGCATACGGGCACTCAACCGACCGGAGAGGCCAGTCGAAAAGGCAGAA-
15211993 GTGCA-AG-TCAGGGATCAACCCAAT-CCCT-CCT-TGCGTGCTACCAATCCTG
130 -TGCAGAGCT-AGGGAT-AACCC--TGCCCTACCTCTGCGTGCTACCAATCCTG
15212042 CTGCTTGCCC
Statistics
Matches: 147, Mismatches: 26, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
197 1 0.01
198 133 0.90
199 6 0.04
200 6 0.04
201 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (197 bp):
GGTCCGATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
CTCAACCCACGAAACGAGCATACGGGCACTCAACCGACCGGAGAGGCCAGTCGAAAAGGCAGAAT
GCAGAGCTAGGGATAACCCTGCCCTACCTCTGCGTGCTACCAATCCTGTTGTCGCAACCCCTGGT
CT
Found at i:15212110 original size:26 final size:26
Alignment explanation
Indices: 15212081--15212159 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
15212071 CTAGTCCGAT
15212081 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* *
15212107 CTTAGACATAGAATGAACTCCGTATT
1 CTTAGACATGGAATGAACTCCGTATG
*
15212133 CTTAGACATGAAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15212159 C
1 C
15212160 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15212333 original size:26 final size:26
Alignment explanation
Indices: 15212292--15212344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15212282 CCGATCCAAT
*
15212292 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
15212318 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15212344 C
1 C
15212345 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15212934 original size:195 final size:188
Alignment explanation
Indices: 15212601--15213114 Score: 574
Period size: 195 Copynumber: 2.7 Consensus size: 188
15212591 AAGCTGCAGA
* *
15212601 TCCTGCTACCGCAACCCTCGGTCCGAT-TCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGA
1 TCCTGCTGCC-CAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * ** * *
15212665 CTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCCTGCGCTCAGCCGATCG
64 CTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGTCG
** * * * *
15212730 AAGAGGTAGAATGCGTAAGCCGGGGATCGGTCCGGTCCCCCCTGCATGCTATCGATCTTGTTGCT
129 AAGAGGTAGAATGCACAAGACGGGGATCGATCCGATCCCCCCTACATGCTATCGATC------CT
15212795 GG
188 -G
* ** *
15212797 TCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTGGACT-GGAATGAGTTTTGTATGCTTAGAC
1 TCCTGCTGCC-CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
* * * * *
15212861 -ATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGCGTGTGGGTGCTCAACCGGTCG
65 TA-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGTCG
* * *
15212925 AAGAGGTAGAATGCACAAGACGGGGATCGATTCGATCCCCCCTACGTGCTGTCGATCCTG
129 AAGAGGTAGAATGCACAAGACGGGGATCGATCCGATCCCCCCTACATGCTATCGATCCTG
* *
15212985 --CTGCTG--CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATACTTAGACT
1 TCCTGCTGCCCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
* * * * * *
15213046 AGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAACCGGCCGAA
66 AGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGTCGAA
15213111 GAGG
131 GAGG
15213115 CATAATGTAT
Statistics
Matches: 270, Mismatches: 44, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
183 27 0.10
184 77 0.29
185 1 0.00
186 6 0.02
188 1 0.00
189 2 0.01
194 1 0.00
195 120 0.44
196 34 0.13
197 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (188 bp):
TCCTGCTGCCCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
AGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGTCGAA
GAGGTAGAATGCACAAGACGGGGATCGATCCGATCCCCCCTACATGCTATCGATCCTG
Found at i:15213041 original size:26 final size:26
Alignment explanation
Indices: 15213012--15213062 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15213002 CCGGTCTGAT
15213012 CTTAGACT-GGGAATGAACTCTGTATA
1 CTTAGACTAGGG-ATGAACTCTGTATA
15213038 CTTAGACTAGGGATGAACTCTGTAT
1 CTTAGACTAGGGATGAACTCTGTAT
15213063 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATA
Found at i:15213599 original size:26 final size:26
Alignment explanation
Indices: 15213563--15213615 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15213553 CCGATCTGAT
15213563 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * * *
15213589 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
15213615 C
1 C
15213616 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:15213897 original size:551 final size:551
Alignment explanation
Indices: 15212791--15213956 Score: 1422
Period size: 551 Copynumber: 2.1 Consensus size: 551
15212781 TCGATCTTGT
* * ** * * ** **
15212791 TGCTGGTCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTGGACT-GGAATGAGTTTTGTATGC
1 TGCTGGTCATGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATAAACTCCGTATGC
* * *** *
15212855 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGCGTGTGGGTGCTCAACC
66 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACC
* * * * *
15212920 GGTCGAAGAGGTAGAATGCACAAGACGGGGATCGATTCGATCCCCCCTACGTGCTGTCGATCCTG
131 AGTCGAAGAGGCAGAATGCACAAGACAGGGATCGATTCGATCCCCCCTACATGCTGTCGATCCTA
* * * * * **
15212985 CTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATACTTAGACTAGGG
196 CTGCCGCAACCATCAGTCCGATCTGATCTTAGACTGGGAAAGAACTCCATATACTTAGACTAGGG
* * *
15213050 ATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAACCGGCCGAAGAGG
261 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGCGCGCTCAACCGGCCGAAGAGG
* * *
15213115 CATAATGTATAAGCCAAGGATCAGCCTAGTCCCCCTCTGTGTGCTACCATTCTCGCTACCAGTCC
326 CATAATGCATAAGCCAAGGATCAGCCGAGTCCCCCTCTGTGAGCTACCATTCTCGCTACCAGTCC
* * * *
15213180 TGCTACCATAACCCTTAGTCCGGCTGGGGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAA
391 TGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
* ** * *
15213245 CCCACGAAACGAGCGTCCGGGTGCTCAGTCGGCCGGAGAGGTAGAATGCACAAGCCAGGGATCGA
456 CCCACGAAACGAGCGTCCGGGTGCTCAGCCAACCGGAGAGGCAAAATGCACAAGCCAGGGATCGA
* *
15213310 CTCGTTCCCCCCTGCGTGCTGCCCATCCTAC
521 CTCGGTCCCCCCTGCGAGCTGCCCATCCTAC
* ** * * *
15213341 TGCTGGTCTTGCTACTGCAACCTTCGGTCCGGTCCAATCTTAGATTGGGAATAAACTCCGTATGC
1 TGCTGGTCATGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATAAACTCCGTATGC
* * * *
15213406 TTAGACATGGAATGAACTCCGTATGCCTCAGGCAACCCACGAAACGAGTGTACAGGCGCTCAGCC
66 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACC
* * * ** * * *
15213471 AGTTGGAGAGGCAGCATGCGTAAGCCAGGGATCGATTCGATTCCCCCTGCATGCTGTCGATCCTA
131 AGTCGAAGAGGCAGAATGCACAAGACAGGGATCGATTCGATCCCCCCTACATGCTGTCGATCCTA
* * * *
15213536 TTGCCGCAACCATCAGTCCGATCTGATCTTAGACTGGGAAAGAACTCCATATGCTTAGGCTGGGG
196 CTGCCGCAACCATCAGTCCGATCTGATCTTAGACTGGGAAAGAACTCCATATACTTAGACTAGGG
*
15213601 ATGAACTCCGTATGCCTAAGTCAACCC-CTGAAATGAATGTGCGCGCGCTCAACCGGCCGAAGAG
261 ATGAACTCCGTATGCCTAAGTCAACCCAC-GAAATGAACGTGCGCGCGCTCAACCGGCCGAAGAG
* * ** * * *
15213665 GCATAATGCGTAAGCCGAGGATCAGGCCGA-TCCCCCTCTGTGAGCTGTCGTTCTCGCTGCCGGT
325 GCATAATGCATAAGCCAAGGATCA-GCCGAGTCCCCCTCTGTGAGCTACCATTCTCGCTACCAGT
* * *
15213729 CCTGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
389 CCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCC
* *** ** *
15213794 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCAACCGGAGAGGCAAAATGCATGGGCTGGGGATT
454 AACCCACGAAACGAGCGTCCGGGTGCTCAGCCAACCGGAGAGGCAAAATGCACAAGCCAGGGATC
* *** *
15213859 GAC-CTGGTCCCCCCTGCGAGTTGGTGATCCTGC
519 GACTC-GGTCCCCCCTGCGAGCTGCCCATCCTAC
* * * * *
15213892 TGCTGGTCATGCTGCCATAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 TGCTGGTCATGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATAAACTCCGTATGC
15213957 CTAAGTCAAC
Statistics
Matches: 512, Mismatches: 100, Indels: 7
0.83 0.16 0.01
Matches are distributed among these distances:
550 38 0.07
551 470 0.92
552 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (551 bp):
TGCTGGTCATGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATAAACTCCGTATGC
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACC
AGTCGAAGAGGCAGAATGCACAAGACAGGGATCGATTCGATCCCCCCTACATGCTGTCGATCCTA
CTGCCGCAACCATCAGTCCGATCTGATCTTAGACTGGGAAAGAACTCCATATACTTAGACTAGGG
ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGCGCGCTCAACCGGCCGAAGAGG
CATAATGCATAAGCCAAGGATCAGCCGAGTCCCCCTCTGTGAGCTACCATTCTCGCTACCAGTCC
TGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTCCGGGTGCTCAGCCAACCGGAGAGGCAAAATGCACAAGCCAGGGATCGA
CTCGGTCCCCCCTGCGAGCTGCCCATCCTAC
Found at i:15214276 original size:26 final size:26
Alignment explanation
Indices: 15214247--15214297 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15214237 CGGTCCGATC
15214247 TTAGAAT-GGGAATGAACTCCGTATGG
1 TTAGAATAGGG-ATGAACTCCGTATGG
* *
15214273 TTAGACTAGGGATGAACTCTGTATG
1 TTAGAATAGGGATGAACTCCGTATG
15214298 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGAATAGGGATGAACTCCGTATGG
Found at i:15214473 original size:26 final size:26
Alignment explanation
Indices: 15214444--15214496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15214434 CCGGTCTGAT
15214444 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
15214470 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15214496 C
1 C
15214497 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15215133 original size:158 final size:158
Alignment explanation
Indices: 15214845--15215136 Score: 336
Period size: 158 Copynumber: 1.8 Consensus size: 158
15214835 TAGACTGGGG
* * * * * *
15214845 ATGAACTCCGTCTGCCTAAGTCAACCCATGCAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGCAACGAGCATACGGCCGCTCAACCGATCGGAGAGG
* * * * * * * ** *
15214910 TAGAATGTGCAAGTCGGGGATCAGCCCGGTCCGCCCTGCATGTTGTCGATCCTGCTACCGCAACC
66 CAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTACCGATCCTGCTACAGCAACC
15214975 CTCGGTCTGGCTGGGGCTTAGACATGCA
131 CTCGGTCTGGCTGGGGCTTAGACATGCA
* * * *
15215003 ATGAACTCCCTATGCCTAAGCCAACCCATG-ACACGGGCATACGGCCTCTCAATCGGTCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGCA-ACGAGCATACGGCCGCTCAACCGATCGGAGAG
* ** *
15215067 GCAGAATGCGCAAGCCGATGATTGGCCCGGTCCCCCCTACATGCTACCGATCCTGCTGTCAG-AA
65 GCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTACCGATCCTGCT-ACAGCAA
15215131 CCCTCG
129 CCCTCG
15215137 ATCCGGTTCG
Statistics
Matches: 108, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.01
158 105 0.97
159 2 0.02
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.19
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGCAACGAGCATACGGCCGCTCAACCGATCGGAGAGG
CAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTACCGATCCTGCTACAGCAACC
CTCGGTCTGGCTGGGGCTTAGACATGCA
Found at i:15215370 original size:26 final size:26
Alignment explanation
Indices: 15215334--15215386 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15215324 TTGGTCTGAT
*
15215334 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15215360 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15215386 C
1 C
15215387 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15215378 original size:185 final size:184
Alignment explanation
Indices: 15215003--15215415 Score: 492
Period size: 185 Copynumber: 2.2 Consensus size: 184
15214993 TAGACATGCA
* * * * * *
15215003 ATGAACTCCCTATGCCTAAGCCAACCCATGACACGGGCATACGGCCTCTCAATCGGTCGGAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGGCATCTCAATCGGCCGGAGAGG
* *** * *
15215068 CAGAATGCGCAAGCCGATGATTGGCCCGGTCCCCCCTACATGCTACCGATCCTGCTGTCAGAACC
66 CAGAATGCGCAAGCCGAGGATCAACCCGGTCCCCCATACATCCTACCGATCCTGCTGTCAGAACC
* *
15215133 CTCGATCCGGTTCGATCTGAGACTGGGAATGAACTTCGTATGGTTAGACTAGGG
131 CTCGATCCGGTTCGATCTGAGACTGGGAATGAACTTCATATGCTTAGACTAGGG
* * *
15215187 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGTGCAT-T-AAGTCGGCCGGAGA
1 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACG-GCATCTCAA-TCGGCCGGAGA
* * * ** *
15215250 GGCAGAATGCGCAAGCCGAGGATCAACCCAGTTCCTCCATGCATCCTGTCGATCCTGCTG-CCGC
64 GGCAGAATGCGCAAGCCGAGGATCAACCC-GGTCCCCCATACATCCTACCGATCCTGCTGTCAG-
* ** * *
15215314 AACCCTCGGTTTGG-TCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGG
127 AACCCTCGATCCGGTTC-GATCTGAGACTGGGAATGAACTTCATATGCTTAGACTAGGG
*
15215372 ATGAACTCCATATGCCTAAGTCAACCCATGGAACGAGCATACGG
1 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGG
15215416 GCGCTCAGTC
Statistics
Matches: 193, Mismatches: 31, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
183 2 0.01
184 78 0.40
185 113 0.59
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGGCATCTCAATCGGCCGGAGAGG
CAGAATGCGCAAGCCGAGGATCAACCCGGTCCCCCATACATCCTACCGATCCTGCTGTCAGAACC
CTCGATCCGGTTCGATCTGAGACTGGGAATGAACTTCATATGCTTAGACTAGGG
Found at i:15216095 original size:26 final size:26
Alignment explanation
Indices: 15216057--15216109 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15216047 GGCTCAAAAT
15216057 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15216083 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15216109 C
1 C
15216110 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15216425 original size:159 final size:157
Alignment explanation
Indices: 15216082--15216511 Score: 425
Period size: 159 Copynumber: 2.7 Consensus size: 157
15216072 AACTCCATAT
* * * * *
15216082 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTAAG
* * ** * * * * *
15216147 TCGGCCGGAGAGGTAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCTACGTGCTATCGATCTT
66 CCAGCCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTACGTGCTATCGATCTC
* * * *
15216212 GTTGTCATAACCCTCGGTCCGGTCTGA
131 GCTGCCACAACCCTCAGTCCGGTCTGA
* * * *
15216239 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTAA
* * * *
15216303 GCCAGCCAAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTATCGGT
65 GCCAGCCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGT-CCCC-CTACGTGCTATCGAT
*
15216368 CTCGCTGCCACAACCCTCAGTCCGG-CTAGG
128 CTCGCTGCCACAACCCTCAGTCCGGTCT-GA
* * * *
15216398 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGAGCGTGC-GGACACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGG-CACTAA
** *** * * * * *
15216462 GCTGGCTGGAGAGGTACAATGCACAAGTCAGGGATCGACCCGGTCCCCCT
65 GCCAGCCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCT
15216512 TGCATGCTGT
Statistics
Matches: 221, Mismatches: 46, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
156 1 0.00
157 89 0.40
158 12 0.05
159 118 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTAAG
CCAGCCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCTACGTGCTATCGATCTC
GCTGCCACAACCCTCAGTCCGGTCTGA
Found at i:15216620 original size:26 final size:26
Alignment explanation
Indices: 15216569--15216621 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15216559 CCGGTCCAAT
*
15216569 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
15216595 CTTAGACAT-GGAATGAACT-CTATATG
1 CTTAGAC-TGGGAATGAACTAC-ATATG
15216621 C
1 C
15216622 CCAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:15216978 original size:159 final size:158
Alignment explanation
Indices: 15216594--15216999 Score: 386
Period size: 159 Copynumber: 2.6 Consensus size: 158
15216584 AACTACGTAT
* * **
15216594 GCTTAGACATGGAATGAACTCTATATGCCCAAGCCAACCCATGAAACGAGCGTGCCAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
15216659 CCGGTCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCCCGATCCCCTCTACGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAAAATGCACAAACCAGGGATCAGCCCGATCCCCTCTACATGCTGCCGATCC
* * * * * *
15216724 TACTGTCGCAACCTTCGGTCTGATCTGA
131 CACTGCCACAACCCTCGGTCCGAGCTGA
* * * * ** * * *
15216752 TCTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * *
15216816 GCCGGCCGAAGAGGCATAATGCGCAAACCAGGGATC-GACTTGGTCTCCCTCTTCATGCTGCCGG
65 GCCGGTCGGAGAGGCAAAATGCACAAACCAGGGATCAG-CCCGATC-CCCTCTACATGCTGCCGA
* *
15216880 TCCCGCTGCCACAACCCTCGGTCCG-GCTGGG
128 TCCCACTGCCACAACCCTCGGTCCGAGCT-GA
* * * * * *
15216911 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
15216976 CCGATCGGAGAGGCAGAATGCACA
66 CCGGTCGGAGAGGCAAAATGCACA
15217000 GGCCGGAAAT
Statistics
Matches: 192, Mismatches: 51, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.01
158 86 0.45
159 103 0.54
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATGCACAAACCAGGGATCAGCCCGATCCCCTCTACATGCTGCCGATCC
CACTGCCACAACCCTCGGTCCGAGCTGA
Found at i:15217035 original size:513 final size:499
Alignment explanation
Indices: 15216054--15217149 Score: 1343
Period size: 513 Copynumber: 2.2 Consensus size: 499
15216044 CGTGGCTCAA
* *
15216054 AATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACT-CGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* ** * * * * * *
15216119 CCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCACAAGTCGGGGATCGG
65 CCCACGAAACGAGCGTGCCAGCGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCAG
* * ** * *
15216184 CCCGGTCCCCCTACGTGCTATCGATCTTGTTGTCATAACCCTCGGTCCGGTCTGATCTTAGACTG
130 CCCGATCCCCCTACGTGCTATCGATCCTACTGTCACAACCCTCGGTCCGATCTGATCTTAGACTG
* * *
15216249 GGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTAAGCCAGCCAAAG
195 GGAATGAACTCCGTATACATAAGTCAACCCACAAAATGAGCGTGCAGGCACTAAGCCAGCCAAAG
* * * * *
15216314 AGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTATCGGTCTCGCTGCCAC
260 AGGCATAATGCGCAAACCAGGGATCGACCCAGTCCCCCTCTGCATGCTACCGGTCCCGCTGCCAC
*
15216379 AACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAA
325 AACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * * * * * * *
15216444 TGAGCGTGCGGACACTCAGCTGGCTGGAGAGGTACAATGCACAAGTCAGGGATCGACCCGGTCCC
390 CGAGCATACGGACACTCAGCCGGCTGGAGAGGCACAATGCACAAGGCAGGAATCGACCAGATCCC
* *
15216509 CCTTGCATGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCC
455 CCCTGCATGCTGTCGA---T-C--CT-GT--TG-T--CGCAACCCTCGGTCCAGTCC
* *
15216566 AATCTTAGACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTCTATATGCCCAAGCCAA
1 AATCTTAGACTGGGAATGAACT-CGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* *
15216631 CCCATGAAACGAGCGTGCCAGCGCTCAGCCGGTCGGAGAGGCAAAATGCACAAGCCAGGGATCAG
65 CCCACGAAACGAGCGTGCCAGCGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCAG
* * * *
15216696 CCCGATCCCCTCTACGTGCTGTCGATCCTACTGTCGCAACCTTCGGTCTGATCTGATCTTAGACT
130 CCCGATCCCC-CTACGTGCTATCGATCCTACTGTCACAACCCTCGGTCCGATCTGATCTTAGACT
* * * * *
15216761 GGGAATGAACTCCGTATACCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGAGCCGGCCGAA
194 GGGAATGAACTCCGTATACATAAGTCAACCCACAAAATGAGCGTGCAGGCACTAAGCCAGCCAAA
*** * * *
15216826 GAGGCATAATGCGCAAACCAGGGATCGACTTGGTCTCCCTCTTCATGCTGCCGGTCCCGCTGCCA
259 GAGGCATAATGCGCAAACCAGGGATCGACCCAGTCCCCCTCTGCATGCTACCGGTCCCGCTGCCA
* *
15216891 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
324 CAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* *** * * * * *
15216956 ACGGGCATACGGGTGCTTAGCC-GATCGGAGAGGCAGAATGCAC-AGGCCGGAAATCGGCCAGAT
389 ACGAGCATACGGACACTCAGCCGGCT-GGAGAGGCACAATGCACAAGGCAGG-AATCGACCAGAT
*
15217019 CCCCCCTGCGTGCTGTCGATCCTGTTGTCGCAACCCTCGGTCCAGTCC
452 CCCCCCTGCATGCTGTCGATCCTGTTGTCGCAACCCTCGGTCCAGTCC
* * * *
15217067 GATCTTAGACTAGGAATGAACTCGATATGCTTAGAC-TGGATATGAACTTTGTATGCCTAAGTCA
1 AATCTTAGACTGGGAATGAACTCG-TATGCTTAGACATGGA-ATGAACTCTGTATGCCTAAGCCA
*
15217131 ACCCACGAAACAAGCGTGC
64 ACCCACGAAACGAGCGTGC
15217150 GGGTGCTCAA
Statistics
Matches: 502, Mismatches: 77, Indels: 21
0.84 0.13 0.04
Matches are distributed among these distances:
500 6 0.01
501 86 0.17
503 1 0.00
504 2 0.00
506 2 0.00
507 2 0.00
509 1 0.00
510 1 0.00
512 130 0.26
513 271 0.54
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (499 bp):
AATCTTAGACTGGGAATGAACTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCCAGCGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCAGC
CCGATCCCCCTACGTGCTATCGATCCTACTGTCACAACCCTCGGTCCGATCTGATCTTAGACTGG
GAATGAACTCCGTATACATAAGTCAACCCACAAAATGAGCGTGCAGGCACTAAGCCAGCCAAAGA
GGCATAATGCGCAAACCAGGGATCGACCCAGTCCCCCTCTGCATGCTACCGGTCCCGCTGCCACA
ACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
GAGCATACGGACACTCAGCCGGCTGGAGAGGCACAATGCACAAGGCAGGAATCGACCAGATCCCC
CCTGCATGCTGTCGATCCTGTTGTCGCAACCCTCGGTCCAGTCC
Found at i:15218110 original size:26 final size:26
Alignment explanation
Indices: 15218074--15218126 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15218064 CCGATCTGAT
15218074 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
15218100 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15218126 C
1 C
15218127 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15219210 original size:13 final size:13
Alignment explanation
Indices: 15219192--15219217 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15219182 GGCGATCAAT
15219192 CGGTCGGAGAGGC
1 CGGTCGGAGAGGC
15219205 CGGTCGGAGAGGC
1 CGGTCGGAGAGGC
15219218 ATAATACGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.54, T:0.08
Consensus pattern (13 bp):
CGGTCGGAGAGGC
Found at i:15220015 original size:26 final size:26
Alignment explanation
Indices: 15219979--15220031 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15219969 CTGGTCCAAA
*
15219979 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15220005 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15220031 C
1 C
15220032 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15220740 original size:26 final size:26
Alignment explanation
Indices: 15220702--15220754 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15220692 GGCTCAAAAT
15220702 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15220728 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
15220754 C
1 C
15220755 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15221030 original size:158 final size:158
Alignment explanation
Indices: 15220728--15221172 Score: 380
Period size: 158 Copynumber: 2.8 Consensus size: 158
15220718 ACTCTGTATG
* * * * *
15220728 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * *
15220793 CGATCGGAGAGGCAGATTGCGTAAGTCAGAGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CAATCGAAAAGGCAGAATGCGAAAGTCAGAGATCGGCCAGGTCCCCCCTACGTCCTGTCGATCCT
*
15220858 GCTACCGAAACCCTCAGTCCATTCTGAT
131 ACTACCGAAACCCTCAGTCCATTCTGAT
* * *
15220886 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** *
15220950 CCAATCGAAAAGGCATAATGC-AAAGTC-GACGATCGGCCATGTCCCCCTCTGTGTCCTGTCGGT
65 CCAATCGAAAAGGCAGAATGCGAAAGTCAGA-GATCGGCCAGGTCCCCC-CTACGTCCTGTCGAT
* * * * * **
15221013 CCTATTACC-ACATCCCTCGGTCCGGTT-GGGG
128 CCTACTACCGA-AACCCTCAGTCC-ATTCTGAT
* * * * * ** **
15221044 CTTAGACATGGAATGAACTCCGTATACGTAAGCTAACCCATGAAACGAGCATGTAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * * *
15221109 CGACCGAAAAGGTAGAATGCGTAAGCCAGGGATCTGCCCGGT-CCCCCTGCGTGCTGTCGATCCT
66 CAATCGAAAAGGCAGAATGCGAAAGTCAGAGATCGGCCAGGTCCCCCCTACGTCCTGTCGATCCT
15221173 GCTGTTGATC
Statistics
Matches: 226, Mismatches: 53, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 37 0.16
158 170 0.75
159 16 0.07
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAATCGAAAAGGCAGAATGCGAAAGTCAGAGATCGGCCAGGTCCCCCCTACGTCCTGTCGATCCT
ACTACCGAAACCCTCAGTCCATTCTGAT
Found at i:15221251 original size:26 final size:26
Alignment explanation
Indices: 15221213--15221265 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15221203 TCGATCTAAT
15221213 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15221239 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15221265 C
1 C
15221266 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15221664 original size:158 final size:158
Alignment explanation
Indices: 15221296--15221664 Score: 397
Period size: 158 Copynumber: 2.3 Consensus size: 158
15221286 AGCGTACGGG
* *
15221296 TGCCACAACCCTTAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 TGCCACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
15221361 ACGAAACCAGCGTGGGGGCGCTGAGCGGCCGAAGAGGCATAATGCCCAAGCCGGGGATCGGGCCG
66 ACGAAACCAGCGTAGGGGCGCTCAGCGACCGAAGAGGCAGAATGCCCAAGCCGGGGATCGGCCCG
* *
15221426 GTCCCTCTCTACATGCTGCCAGTCCTGC
131 ATCCCCCTCTACATGCTGCCAGTCCTGC
* * ** * *
15221454 TACCACAACCCTTGGTCTGAT-TGGGGCTTAGACAT-AGAATGAACTCCCTATGCCTAAGCCAAC
1 TGCCACAACCCTTGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAC
*** * * * * *
15221517 CCACGAAATGGGTGTATGGGCGCTCAGCCGACC-AGAGAGGCAGAATGCTCATGCTGGGGATCGG
64 CCACGAAACCAGCGTAGGGGCGCTCAG-CGACCGA-AGAGGCAGAATGCCCAAGCCGGGGATCGG
* * **
15221581 CCCGATCCCCCT-TGCGTGCTG-TTGATCCTGC
127 CCCGATCCCCCTCTACATGCTGCCAG-TCCTGC
* *
15221612 TGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 TGCCACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
15221665 TTAGACTGGT
Statistics
Matches: 169, Mismatches: 35, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 126 0.75
159 40 0.24
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
TGCCACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACCAGCGTAGGGGCGCTCAGCGACCGAAGAGGCAGAATGCCCAAGCCGGGGATCGGCCCG
ATCCCCCTCTACATGCTGCCAGTCCTGC
Found at i:15221667 original size:26 final size:26
Alignment explanation
Indices: 15221638--15221690 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15221628 CCGGTCTGAT
15221638 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGTG-ATGAACTCTGTATG
15221664 CTTAGACTGGTGATGAACTCTGTATG
1 CTTAGACTGGTGATGAACTCTGTATG
15221690 C
1 C
15221691 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCTGTATG
Found at i:15223224 original size:26 final size:26
Alignment explanation
Indices: 15223186--15223264 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
15223176 GGCTCAAACT
15223186 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15223212 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15223238 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15223264 C
1 C
15223265 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15223591 original size:26 final size:26
Alignment explanation
Indices: 15223555--15223607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15223545 CTGGTTCGAT
15223555 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15223581 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15223607 C
1 C
15223608 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15223780 original size:26 final size:26
Alignment explanation
Indices: 15223751--15223803 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15223741 CCGATCCAAT
15223751 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
15223777 CTTAGACATGGAATGAATTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15223803 C
1 C
15223804 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15224044 original size:158 final size:157
Alignment explanation
Indices: 15223777--15224258 Score: 481
Period size: 158 Copynumber: 3.0 Consensus size: 157
15223767 ACTCCGTATG
* * *
15223777 CTTAGACATGGAATGAATTTCGTATGCCTCAGCCAACCCACGAAACGAGCGTACGGGTGC-GCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTG-AG
* * * * * *
15223841 CCGACCGGAGAGGTAGAATGTGCAAGCCGGGGA-CTGACCTAGTCCCCCCTGCATGCTATCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCAAGTCCCCCCTGCGTGCTGTCGATC
15223905 CTGCTACTGTAACCCTCGGTCTGGTCTGAT
129 CTGCTACTG-AACCCTCGGTCTGGTCTGAT
* ** * * **
15223935 CTTAGACAAGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTTCGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTGAGC
* * * ** *
15224000 CAACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGACA
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAAGTCCCCC-CTGCGTGCTGTC-GA-T
* * **
15224065 CGCTGCCAC--AACCCTCGGTCCGGT-TGGGG
128 C-CTGCTACTGAACCCTCGGTCTGGTCT-GAT
* * * * *
15224094 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTGAGC
* * * * *
15224159 CGATCGAAGAGGCAGAATGCGTAAGCCGGAGATCGGCCAAGTCCCCCCTACGTGCTGTCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAAGTCCCCCCTGCGTGCTGTCGATCCT
* * *
15224224 GCT-GTCGCAACCCTTGGTCTGGTCCGAT
131 GCTACT-G-AACCCTCGGTCTGGTCTGAT
15224252 CTTAGAC
1 CTTAGAC
15224259 TGTGAATAAA
Statistics
Matches: 258, Mismatches: 54, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
155 4 0.02
156 1 0.00
157 2 0.01
158 123 0.48
159 119 0.46
160 2 0.01
161 1 0.00
162 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTGAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAAGTCCCCCCTGCGTGCTGTCGATCCT
GCTACTGAACCCTCGGTCTGGTCTGAT
Found at i:15224611 original size:697 final size:693
Alignment explanation
Indices: 15223373--15224658 Score: 1464
Period size: 697 Copynumber: 1.8 Consensus size: 693
15223363 TGTCCCACTA
* *
15223373 CCACAACCATCGGTCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCATCGGTCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAAC
* * * * ***
15223438 GAAACGAGCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGTACAAGCTGGGGATCGGCTTGG
66 GAAACGAGCGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCACAAGCCGGAGATCGGCCAAG
** * *
15223503 TCCCCCCTGTGTGCTGCCGATCCTGCTACCGTAACCATCAATCTGGTTCGATCTTAGACTGGGAA
131 TCCCCCCTACGTGCTGCCGATCCTGCTACCGCAACCATCAATCTGGTCCGATCTTAGACTGGGAA
* * * * *
15223568 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
196 TAAAATCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCAT
* * * * * * **** * * * *
15223633 GCGGGCACTCAGTCGGCCGGAGAGGTCGGTTGGAGAGGCAGAATTCGTAAGCCGAGGATCATCCC
261 ACGGGCACTCAGCCGACCAGAGAGGCCAGCCAAAAAGGCAGAATGCGCAAGCCGAGGATCAGCCC
* * * * * * *
15223698 GGTCCCTCTGTGTGTTGTCGATCCTACTGCTGCAACCCTCAGTCCGATCCAATCTTAGACTGGGA
326 GGTCCCTCTGTGTGCTGCCGATCCCACAGCTG-AACCCT-AG-CCGATCCAATCTAACACTCGGA
* * * * *
15223763 ATGAACTCCGTATGCTTAGACATGGAATGAATTTCGTATGCCTCAGCCAACCCACGAAACGAGCG
388 ACGAACT-CGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
* * ** * *
15223828 TACGGGTGCGCAGCCGACCGGAGAGGTAGAATGTGCAAGCCGGGGACTGACCTAGTCCCCCCTGC
452 TACGGGTGCGCAACCGACCAGAGAGGTAGAATGCACAAGCCGGGGACCGACCCAGTCCCCCCTGC
* * * *
15223893 ATGCTATCGATCCTGCTACTGTAACCCTCGGTCTGGTCTGATCTTAGACAAGGAATGAACTCCGT
517 ATGCTATCGATCCTACTACTGTAACCCTCGATCTGGTCTAATCTTAGACAAGGAATGAACTCCAT
15223958 ATGCCTAAGTTAACCCACGAAACGAGTGTTCGGGCACTGAGCCAACCGGAGAGGCATAATGCGCA
582 ATGCCTAAGTTAACCCACGAAACGAGTGTTCGGGCACTGAGCCAACCGGAGAGGCATAATGCGCA
15224023 AGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGACACGCTG
647 AGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGACACGCTG
*
15224070 CCACAACCCTCGGTCCGGT-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAA
1 CCACAACCATCGGTCC-GTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAA
* ** * **
15224134 CGAAACGGGCGTGCGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCGGAGATCGGCCAA
65 CGAAACGAGCGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCACAAGCCGGAGATCGGCCAA
* ** * *** *
15224199 GTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTTGGTCTGGTCCGATCTTAGACTGTGA
130 GTCCCCCCTACGTGCTGCCGATCCTGCTACCGCAACCATCAATCTGGTCCGATCTTAGACTGGGA
* *
15224264 ATAAAATCTATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC-TCGAAATGAGC
195 ATAAAATCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCAT-GAAACGAGC
* * *
15224328 ATACGGGCGCTCAGCCGACCAGAGAGGCCAGCCAAAAAGGCATAATGCGCAAGCTGAGGATCAGC
259 ATACGGGCACTCAGCCGACCAGAGAGGCCAGCCAAAAAGGCAGAATGCGCAAGCCGAGGATCAGC
* ** * *
15224393 TCGGTCACCCTCTGTGTGCTGCCGATCCCACAGCTG-GTCCT-G-CTA-CC-A-C-AACCCTCGG
324 CCGGT--CCCTCTGTGTGCTGCCGATCCCACAGCTGAACCCTAGCCGATCCAATCTAACACTCGG
** * * *
15224451 TCCG-ACT-G-GCGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCG
387 AACGAACTCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
* * **
15224513 TGCGGGTGCTCAACCGGTCAGAGAGGTAGAATGCACAAGCCGGGGATCCG-CCCAGTCCCCCCTG
452 TACGGGTGCGCAACCGACCAGAGAGGTAGAATGCACAAGCCGGGGA-CCGACCCAGTCCCCCCTG
* * **
15224577 CGTGCTGGCGATCTTGCTATTGGTCCTACTACTGTAACCCTTGATCTGGTCTAATCTTAGACTGG
516 CATGCT----ATC--G--A----TCCTACTACTGTAACCCTCGATCTGGTCTAATCTTAGACAAG
15224642 GAATGAACTCCATATGC
569 GAATGAACTCCATATGC
15224659 TTAGACATGG
Statistics
Matches: 480, Mismatches: 92, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
685 103 0.21
686 3 0.01
688 3 0.01
689 9 0.02
690 1 0.00
691 2 0.00
692 2 0.00
693 3 0.01
695 1 0.00
696 1 0.00
697 325 0.68
698 2 0.00
699 25 0.05
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (693 bp):
CCACAACCATCGGTCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAAC
GAAACGAGCGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCACAAGCCGGAGATCGGCCAAG
TCCCCCCTACGTGCTGCCGATCCTGCTACCGCAACCATCAATCTGGTCCGATCTTAGACTGGGAA
TAAAATCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCAT
ACGGGCACTCAGCCGACCAGAGAGGCCAGCCAAAAAGGCAGAATGCGCAAGCCGAGGATCAGCCC
GGTCCCTCTGTGTGCTGCCGATCCCACAGCTGAACCCTAGCCGATCCAATCTAACACTCGGAACG
AACTCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
GGTGCGCAACCGACCAGAGAGGTAGAATGCACAAGCCGGGGACCGACCCAGTCCCCCCTGCATGC
TATCGATCCTACTACTGTAACCCTCGATCTGGTCTAATCTTAGACAAGGAATGAACTCCATATGC
CTAAGTTAACCCACGAAACGAGTGTTCGGGCACTGAGCCAACCGGAGAGGCATAATGCGCAAGTC
GGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGACACGCTG
Found at i:15224670 original size:26 final size:26
Alignment explanation
Indices: 15224632--15224684 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15224622 CTGGTCTAAT
15224632 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15224658 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15224684 C
1 C
15224685 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15224957 original size:159 final size:159
Alignment explanation
Indices: 15224658--15225153 Score: 545
Period size: 159 Copynumber: 3.1 Consensus size: 159
15224648 ACTCCATATG
15224658 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
15224723 CGGTCAGAGAGGCAGAATGCGCAAG-CAGGGGACCGACCCGGTCCCCCTCTACGTGTTGTCGATC
66 CGGCCAGAGAGGCAGAATGCGCAAGCCA-AGGATCGGCCCGATCCCCCTCTACGTGCTGTCGATC
* *
15224787 CTACTGTCACAACCCTCGATCCGGTCTGAT
130 CTACTGCCACAACCCTCGGTCCGGTCTGAT
* * ** * * * * *
15224817 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATACGAGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
15224881 CTGACCAGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACGTGCTGTC-AGT
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGA-T
** * **
15224945 CCCGCTGCCACAACCCTCGGTCTGG-CTGGGG
129 CCTACTGCCACAACCCTCGGTCCGGTCT-GAT
* *
15224976 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** ** * * * * *
15225041 CGGCTGGAGACACAGAATGCACATGCCGAGGATCGGCCCGATCCCTC-CTACGTGCTGCCGATCC
66 CGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGATCC
* * * *
15225105 TACTGCCGCAACCTTTGGTCCGGTCCGAT
131 TACTGCCACAACCCTCGGTCCGGTCTGAT
15225134 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
15225154 TATATGCTTA
Statistics
Matches: 272, Mismatches: 57, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 54 0.20
159 214 0.79
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGATCC
TACTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:15225185 original size:26 final size:26
Alignment explanation
Indices: 15225134--15225186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15225124 CCGGTCCGAT
*
15225134 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15225160 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15225186 C
1 C
15225187 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15226240 original size:26 final size:26
Alignment explanation
Indices: 15226199--15226251 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226189 CCAATTAGAT
15226199 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15226225 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15226251 C
1 C
15226252 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15226446 original size:26 final size:26
Alignment explanation
Indices: 15226408--15226460 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226398 CCGGTTTGAT
15226408 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15226434 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15226460 C
1 C
15226461 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15226938 original size:26 final size:26
Alignment explanation
Indices: 15226909--15226961 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226899 CAGGTCCGAT
15226909 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
15226935 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
15226961 C
1 C
15226962 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:15227329 original size:26 final size:26
Alignment explanation
Indices: 15227278--15227329 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15227268 CCGGTCCGAT
* *
15227278 CTTAGACGGGGAATGAACTCTATATG
1 CTTAGACAGGGAATGAACTCCATATG
* *
15227304 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
15227330 ACTAAGCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:15229231 original size:26 final size:26
Alignment explanation
Indices: 15229195--15229247 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15229185 TTGATCTGAT
*
15229195 CTTAGACTGGGAATGAGCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15229221 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15229247 C
1 C
15229248 CTAAATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15229757 original size:26 final size:26
Alignment explanation
Indices: 15229721--15229773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15229711 CTGGTCTGAT
15229721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15229747 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15229773 C
1 C
15229774 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15230127 original size:26 final size:25
Alignment explanation
Indices: 15230089--15230140 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
15230079 TCGATCCGAT
15230089 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCA-ATG
15230115 CTTAGACAT-GGAATGAACTCCAATG
1 CTTAGAC-TGGGAATGAACTCCAATG
15230140 C
1 C
15230141 CTAAGCCGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.16
26 20 0.80
27 1 0.04
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCAATG
Found at i:15230731 original size:26 final size:26
Alignment explanation
Indices: 15230702--15230754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15230692 CCGGTCCGAT
*
15230702 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15230728 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15230754 C
1 C
15230755 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15231098 original size:26 final size:26
Alignment explanation
Indices: 15231069--15231121 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15231059 CCGATCTGAT
15231069 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACATA-GAATGAACTCTGTATG
15231095 CTTAGACATAGAATGAACTCTGTATG
1 CTTAGACATAGAATGAACTCTGTATG
15231121 C
1 C
15231122 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCTGTATG
Found at i:15231170 original size:367 final size:344
Alignment explanation
Indices: 15230521--15231565 Score: 987
Period size: 367 Copynumber: 3.0 Consensus size: 344
15230511 GGTCCCACAG
* * *
15230521 CCACAACCCTCGGT-CTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTAGGTCCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * ** * * * * * *
15230585 TGAAACGAGCATCCGGGCGCTCAATCGATCGGAGAGGCAGAATGTGCAAGCCCGAGATCGACCCG
66 TGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCG
* * * * * *
15230650 GT-CCCCCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGA
131 GTCCCCCCTACGTGCTGCCAATCCTGCTGCTGCAACCCTCGATCCGATCCGATCTTAGACTAGGA
* * *
15230714 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACG
196 ATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAACG
** * * *
15230779 TGCGGGCGTTCAGCCGGTCGGAGAGTCATAATGCGTAAGCCGGGGATCAGCCCGATTCCTCTCTG
261 TGCGGGCGTTCAGCCGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGCCCGATCCCTCTCTG
* *
15230844 CATGTTACCGATCCCGTTGTCGGTC
326 CATGCTACCGAT--C-TTGT---TA
* * * *
15230869 CTGCTACGATAACCCTAGGT-TCGACTGGGGCTTAGACATGGAATAAACTTCGTATGCCTAAGCC
1 C--C-AC---AACCCTAGGTCCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * *
15230933 AACCCATGAAACGAGCGTGTGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATC
60 AACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATC
*
15230998 GGCTCGGTCCCCCCTACGTGTTGCCAATCCTGCTACTGGTCCTGCTACCAGAACCCTCGATCCGA
125 GGCTCGGTCCCCCCTACGTGCTGCCAATCCTG---CT-G--CTG----C--AACCCTCGATCCGA
* * *
15231063 TCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACAT-AGAATGAACTCTGTATGCCTAAG
178 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGAGAATGAACTCCGTATGCCTAAG
15231127 CCAAGCC-ACGAAAC-AAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAAAATGCGTAAGCCGGG
242 CCAA-CCTACGAAACGAA-CGTGCGGGCGTTCAGCCGACCGGAGAGGCAAAATGCGTAAGCCGGG
** * *
15231190 GATTGGCCCGGTCCCTCTCTGCGTGCTACCGATCTTGTTA
305 GATCAGCCCGATCCCTCTCTGCATGCTACCGATCTTGTTA
* * * *
15231230 CCACAACCTTCGGTCCCG-TTGGGGATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTAGGTCCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
15231294 CGAAACGGGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATC-GATCC
66 TGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCT-C
* ** * * * * *
15231358 GGTCCACCCTACGTGCTTTCGATCCTGCT-ATCGTAACCCTCGATCTGATTCGATCTTAGACTAG
130 GGTCCCCCCTACGTGCTGCCAATCCTGCTGCT-GCAACCCTCGATCCGATCCGATCTTAGACTAG
* * * * * * *
15231422 GAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
194 GAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAA
* * ** * * * ** * * * *
15231487 CATGCAGGCACTCAGTC-AGCCGGAGAGGTAGAATGCACAAGCTGGGGATCGGCCTGGTCCCT-T
259 CGTGCGGGCGTTCAGCCGA-CCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGCCCGATCCCTCT
*
15231550 CTGCATGCTACAGATC
323 CTGCATGCTACCGATC
15231566 CTTCTGTTGG
Statistics
Matches: 574, Mismatches: 94, Indels: 64
0.78 0.13 0.09
Matches are distributed among these distances:
342 19 0.03
343 125 0.22
344 1 0.00
348 2 0.00
349 1 0.00
350 1 0.00
351 2 0.00
352 2 0.00
354 108 0.19
355 143 0.25
356 2 0.00
358 4 0.01
359 2 0.00
361 5 0.01
364 4 0.01
365 2 0.00
366 2 0.00
367 146 0.25
368 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (344 bp):
CCACAACCCTAGGTCCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
TGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCG
GTCCCCCCTACGTGCTGCCAATCCTGCTGCTGCAACCCTCGATCCGATCCGATCTTAGACTAGGA
ATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAACG
TGCGGGCGTTCAGCCGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGCCCGATCCCTCTCTG
CATGCTACCGATCTTGTTA
Found at i:15232133 original size:26 final size:26
Alignment explanation
Indices: 15232097--15232148 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15232087 CTGATCCGAT
*
15232097 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15232123 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15232149 TCTAAGGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15232512 original size:26 final size:26
Alignment explanation
Indices: 15232474--15232526 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15232464 CCAATCTAAT
15232474 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15232500 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15232526 C
1 C
15232527 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15233069 original size:157 final size:154
Alignment explanation
Indices: 15232593--15233072 Score: 434
Period size: 158 Copynumber: 3.1 Consensus size: 154
15232583 CTGCTGCCAC
* *
15232593 AACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * * *
15232658 CGAGCGTGCAGGCGCTCAGCCGGCTGGAAAGGCAGAATGTGCAAGTCGGGGATCGGCCGATCCCT
66 TGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCC-
* *
15232723 CCCTACGTGCTATCGATCCTGCTATCG
130 CCTTA--TGCTGTCGATCCTGCTATCG
* * ** *
15232750 CAACCGTCGGTTTGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
1 -AACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * *
15232813 AAATGAGCGTGCGGGTGCTGA-CCGACCGGAGAGGCACAATGCACAAGCTGAGGATCGACCTAGT
63 AAATGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGA-T
* *
15232877 CCCCCTT-TGCATGCTACGGTCCCGTCGCCA-C-
127 CCCCCTTATGC-TG-T-CGAT-CC-T-GCTATCG
* * * ** *
15232908 AACCCTCAGTCTGGCTGGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGACACAAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * *
15232973 T-AGGCGTACGGGTGCTTAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCC
66 TGA-GCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATCC
*
15233037 CCCTGTATGCTGTCGATACTGCTATCG
129 CCCT-TATGCTGTCGATCCTGCTATCG
15233064 TAACCCTCG
1 -AACCCTCG
15233073 ATCCGATCCA
Statistics
Matches: 253, Mismatches: 50, Indels: 39
0.74 0.15 0.11
Matches are distributed among these distances:
154 6 0.02
155 3 0.01
156 5 0.02
157 110 0.43
158 113 0.45
159 10 0.04
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (154 bp):
AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
TGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCC
CTTATGCTGTCGATCCTGCTATCG
Found at i:15233842 original size:26 final size:26
Alignment explanation
Indices: 15233805--15233856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15233795 GCTTAAAATA
15233805 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15233831 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
15233857 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15234332 original size:158 final size:153
Alignment explanation
Indices: 15234148--15234499 Score: 388
Period size: 154 Copynumber: 2.3 Consensus size: 153
15234138 CCGACTGGGG
* * * * *
15234148 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGTGCT-CAA
1 CTTAGAC-TGGAATGAACTCCGTATGCCCAAGTCAACCCACAAAACGAACGTGCGAGTGCTGC-A
* * * *
15234212 CCGGCTAGAGAGGCAGAATGCGTAAGTCGGGGATCCACTCGGTCCCCCCTGCGTGCTGTCGATCC
64 CC-G---GAGAGGCAGAATGCGTAAGTCGGGGATCCACCCGATCCCCCCTACGTGCTATCGATCC
15234277 TGCT-G-TGGCAACCCTC-AGTCCAATCCGAT
125 TG-TAGCT-GCAACCCTCGA-TCCAATCCGAT
* * * *
15234306 CTTAGACTGGGAATGAACTCCGTATGCCCAAATCAACCCACAAAATGAACGTGTGAGTGCTGCGC
1 CTTAGACT-GGAATGAACTCCGTATGCCCAAGTCAACCCACAAAACGAACGTGCGAGTGCTGCAC
* ** *
15234371 CGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGATCCCTCCTACGTGCTATCGATCCTGTAG
65 CGGAGAGGCAGAATGCGTAAGTCGGGGATCCACCCGATCCCCCCTACGTGCTATCGATCCTGTAG
*
15234436 CTGTAACCCTCGATCCAATCCGAT
130 CTGCAACCCTCGATCCAATCCGAT
* * *
15234460 CATAGACTAGGAATGAACTCTGTATGCCGAAGTCAACCCA
1 CTTAGACT-GGAATGAACTCCGTATGCCCAAGTCAACCCA
15234500 TGAAATGAGT
Statistics
Matches: 166, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
153 1 0.01
154 107 0.64
155 2 0.01
157 2 0.01
158 53 0.32
159 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (153 bp):
CTTAGACTGGAATGAACTCCGTATGCCCAAGTCAACCCACAAAACGAACGTGCGAGTGCTGCACC
GGAGAGGCAGAATGCGTAAGTCGGGGATCCACCCGATCCCCCCTACGTGCTATCGATCCTGTAGC
TGCAACCCTCGATCCAATCCGAT
Found at i:15236298 original size:26 final size:26
Alignment explanation
Indices: 15236269--15236321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15236259 CTGGTTCGAT
*
15236269 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15236295 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15236321 C
1 C
15236322 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15236584 original size:171 final size:170
Alignment explanation
Indices: 15236294--15236725 Score: 503
Period size: 171 Copynumber: 2.5 Consensus size: 170
15236284 AACTCTGTAT
* *
15236294 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG-ATGCGGGCGCTCAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAA
* * * * * *
15236358 CCGATCGGAGAGGC-GTAGTGCACAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTGCTGAT
65 CCGATCGGAGAGGCAG-AATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGAT
* * *
15236422 CCCACTGCTAGTCCTGCTGCCACAACCCTCGGTTC-GACTAGG
129 CCCACTGCTAGTCCTACTGCCACAACCCTCGGTCCGGACT-GA
* * *
15236464 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAA
* * * *
15236529 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGGTCCCACC-CTGCGTGCTACCGTT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCC-CCTCTGCGTGCTACCGAT
*** * * * *
15236593 CTTGCTGCTGGTCCTACTGTCGCAACCCTCGGTCCGGTCTGA
129 CCCACTGCTAGTCCTACTGCCACAACCCTCGGTCCGGACTGA
* * *
15236635 TCTTAGACTGTGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAA
1 GCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAA
* * *
15236700 CCGACCAGAGAGGCAGGATGCGCAAG
65 CCGATCGGAGAGGCAGAATGCGCAAG
15236726 TCGGGGATTG
Statistics
Matches: 221, Mismatches: 35, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
170 47 0.21
171 168 0.76
172 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAAC
CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCC
CACTGCTAGTCCTACTGCCACAACCCTCGGTCCGGACTGA
Found at i:15238233 original size:26 final size:26
Alignment explanation
Indices: 15238182--15238234 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15238172 CCGATCCGAT
* **
15238182 CTTAGACTTGAAATGAACTCTGTATG
1 CTTAGACATGAAATGAACTCCATATG
*
15238208 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGAAATGAACTCCATATG
15238234 C
1 C
15238235 CTAAGCCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCATATG
Found at i:15239796 original size:159 final size:157
Alignment explanation
Indices: 15239442--15239878 Score: 371
Period size: 159 Copynumber: 2.8 Consensus size: 157
15239432 AACTTCGTAT
* * *
15239442 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTTCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCGCTCAA
* * * * *
15239507 CCGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGCCGATCCC
** *
15239572 ACTACTGCAACCCTCAATCCAGTCTGA
131 ACTACCACAACCCTCAATCCAGGCTGA
* * * * *
15239599 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGTGCT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCGCTCA
* ** * * * *
15239662 AGCCGGTCTTAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACATGCTGCCGG
65 A-CC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACATGCTGCCGA
** * ** * *
15239727 TCCCGTTGCCACAACCCTCGGT-CTGGCTGGG
127 TCCCACTACCACAACCCTCAATCCAGGCT-GA
* * * ** * * * *
15239758 GCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCTTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCGCTCAA
** * * * *
15239823 CCGGATGGATAGGCAAAATGCACAAGCCGGGGATC-GACCCGAT-CCCCCTACGTGCT
66 CC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCCTACATGCT
15239879 ATCGATCCTA
Statistics
Matches: 221, Mismatches: 51, Indels: 16
0.77 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 62 0.28
158 46 0.21
159 108 0.49
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCGCTCAA
CCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGCCGATCCC
ACTACCACAACCCTCAATCCAGGCTGA
Found at i:15241698 original size:159 final size:157
Alignment explanation
Indices: 15241327--15242008 Score: 643
Period size: 158 Copynumber: 4.3 Consensus size: 157
15241317 AATCTCGTAT
* * * *
15241327 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
* * * * * * * *
15241392 CCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCTACGTCCTGTCAATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTGCCAGTCC
* *
15241457 TGCTGCCACAACCCTTGGTCTGGTCTGA
131 CGCTGCCACAACCCTTGGTCCGG-CTGA
* * * * * * * * *
15241485 TCTTAGAC-TGGGAATGAAATCCGTATGCATAGGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCA
* * *
15241549 GCCGGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTGTTCGTGCTGCCAGT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCC-CTACGTGCTGCCAGT
*
15241614 CCCGCTGCCACAACCCTTGGTCCGGCTGGG
129 CCCGCTGCCACAACCCTTGGTCCGGCT-GA
* * *
15241644 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAA-TAGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGAGCACTCA
* * * * * * * *
15241708 GTCGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCACCTACGTGTTG-CGGAT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTGCCAG-T
** * * * *
15241772 CCTACTGCCGCAACCCTCGATCCAGTCTGA
129 CCCGCTGCCACAACCCTTGGTCC-GGCTGA
* * * * * * * * *
15241802 TCTTAGAC-TGGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAGCATCCAAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCA
* * * * * * * * *
15241866 GCCAGCCGAAGAGGCATAATGCGCAAGTTGAGGGTCGGCCTGGTCCCCCTCTGCATGCTTCCAGT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCC-CTACGTGCTGCCAGT
* * * *
15241931 CCCGTTACCACAACCCTTAGTCCGGCTGGG
129 CCCGCTGCCACAACCCTTGGTCCGGCT-GA
*
15241961 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
15242009 GACGTGCAAG
Statistics
Matches: 414, Mismatches: 97, Indels: 25
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 213 0.51
159 193 0.47
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTGCCAGTCC
CGCTGCCACAACCCTTGGTCCGGCTGA
Found at i:15241915 original size:317 final size:317
Alignment explanation
Indices: 15241327--15241998 Score: 943
Period size: 317 Copynumber: 2.1 Consensus size: 317
15241317 AATCTCGTAT
* * * *
15241327 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAATGAGCGTGCGAGCACTCAG
* * * * * * * *
15241392 CCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCTACGTCCTGTCAATCC
66 CCGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCACCTACGTCCTGTCAATCC
* * * ** *
15241457 TGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAGGTCAA
131 TACTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTCAA
* * * ** *
15241522 CCCATGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGG
196 CCCACGAAACGAGCATCCAAGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGG
* * * * *
15241587 CCCGATCCCCCTGTTCGTGCTGCCAGTCCCGCTGCCACAACCCTTGGTCCGGCTGGG
261 CCCGATCCCCCTCTGCATGCTGCCAGTCCCGCTACCACAACCCTTAGTCCGGCTGGG
*
15241644 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAAT-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAATGA-GCGTGCGAGCACTCA
* ** *
15241708 GTCGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCACCTACGTGTTG-CGGAT
65 GCCGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCACCTACGTCCTGTC-AAT
*
15241772 CCTACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTC
129 CCTACTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTC
* *
15241837 AACCCACGAAACGAGCATCCAAGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGTTGAGGGTC
194 AACCCACGAAACGAGCATCCAAGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGTCGAGGATC
* * * *
15241902 GGCCTGGTCCCCCTCTGCATGCTTCCAGTCCCGTTACCACAACCCTTAGTCCGGCTGGG
259 GGCCCGATCCCCCTCTGCATGCTGCCAGTCCCGCTACCACAACCCTTAGTCCGGCTGGG
15241961 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
15241999 CCATGAAACG
Statistics
Matches: 312, Mismatches: 41, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
316 2 0.01
317 310 0.99
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAATGAGCGTGCGAGCACTCAG
CCGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCACCTACGTCCTGTCAATCC
TACTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTCAA
CCCACGAAACGAGCATCCAAGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGG
CCCGATCCCCCTCTGCATGCTGCCAGTCCCGCTACCACAACCCTTAGTCCGGCTGGG
Found at i:15242162 original size:26 final size:26
Alignment explanation
Indices: 15242087--15242165 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
15242077 TCGATCTGAT
* *
15242087 CTTAGACTGGGAATGAAC-TCTGCATG
1 CTTAGACTGGGGATGAACTTC-GTATG
* *
15242113 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGGATGAACTTCGTATG
15242139 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTTCGTATG
15242165 C
1 C
15242166 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 45 0.98
27 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTTCGTATG
Found at i:15242444 original size:26 final size:26
Alignment explanation
Indices: 15242415--15242467 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15242405 CTGGTCCGAT
15242415 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
*
15242441 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
15242467 C
1 C
15242468 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15243005 original size:26 final size:26
Alignment explanation
Indices: 15242967--15243019 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15242957 GTCTCAAAAT
* *
15242967 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15242993 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15243019 C
1 C
15243020 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15247426 original size:25 final size:25
Alignment explanation
Indices: 15247392--15247443 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
15247382 ATTCGGTTTG
15247392 ATCTTAGACT-GGGAATGAACTCCGT
1 ATCTTAGACTAGGG-ATGAACTCCGT
*
15247417 ATCTTAGACTAGGGATGAACTTCGT
1 ATCTTAGACTAGGGATGAACTCCGT
15247442 AT
1 AT
15247444 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 22 0.88
26 3 0.12
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
ATCTTAGACTAGGGATGAACTCCGT
Found at i:15248285 original size:26 final size:26
Alignment explanation
Indices: 15248256--15248308 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15248246 CCAGTCCGAT
*
15248256 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
15248282 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
15248308 C
1 C
15248309 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15248663 original size:26 final size:26
Alignment explanation
Indices: 15248624--15248676 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15248614 TCGGTCTGAT
* * *
15248624 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATCGAATGAACTCCATATG
15248650 CTTAGACATCGAATGAACTCCATATG
1 CTTAGACATCGAATGAACTCCATATG
15248676 C
1 C
15248677 CTAGCCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATCGAATGAACTCCATATG
Found at i:15248688 original size:367 final size:367
Alignment explanation
Indices: 15247878--15248692 Score: 1097
Period size: 367 Copynumber: 2.2 Consensus size: 367
15247868 CCCCCCTCGA
** * **
15247878 CCCGGTCCGATCTTAGACTGAGAATGAACTCTATATGCTTAGATTGGGGATGAACTCTGTATGCC
1 CCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCC
* * *
15247943 TAAGTCAACCCATGAAATGAGCGTGCGGGCGTTCAACCGACTGGAGAGGCCGGTCGAAGAGGCAT
66 TAAGTCAACCCATCAAATGAGCGTGCGGGCGCTCAACCGACTGGAGAGGCCGGTCGAACAGGCAT
* *
15248008 AATGTGCAAGCCAGGGATTAGCTCGTTCCCCCTCTGCGTCCTACCAATCCCTCTGCCGGTCCTGC
131 AATATGCAAGCCAGGGATTAGCTCGTTCCCCCTCTGCGTCCTACCAATCCCACTGCCGGTCCTGC
* *
15248073 TACCACAACTCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
196 TACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
* * * **
15248138 ACAAAATGGGCGTGCGGGCGCTCAGTCAGCCAGAGAGGCAGAATGCGCAAACCAGGGATTGGCCT
261 ACAAAATGAGCGTACGGGCACTCAGTCAGCCAGAGAGGCAGAATGCGCAAACCAGGGATCAGCCT
* * * ** *
15248203 GATCCCCCTGTGTGCTGTCGATCCTGTTACCGTAACCCTCAG
326 GATCCCCCTGCGTGCTGCCAATCCTACTACCGCAACCCTCAG
*
15248245 CCCAGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCC
1 CCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCC
* *
15248310 TAAGTCAACCCATCAAATGAGCGTGTGGGCGCTCAGCCGACTGGAGAGGCCGGTCGAACAGGCAT
66 TAAGTCAACCCATCAAATGAGCGTGCGGGCGCTCAACCGACTGGAGAGGCCGGTCGAACAGGCAT
* *
15248375 AATATGCAAGTC-GAGGATTAGCTCGTTCCCCCTCTGCGTCCTGCCAATCCCACTGCCGGTCCTG
131 AATATGCAAGCCAG-GGATTAGCTCGTTCCCCCTCTGCGTCCTACCAATCCCACTGCCGGTCCTG
15248439 CTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
195 CTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
** * * * * * * **
15248504 CATGAAATGAGCGTATGGGCACTCA-TCGGTC-GAAGAGGTAGAATGCGTAAGCTGGGGATCAG-
260 CACAAAATGAGCGTACGGGCACTCAGTCAGCCAG-AGAGGCAGAATGCGCAAACCAGGGATCAGC
* *
15248566 CTCGATCCCCCACTGCGTGCTGCCAATCCTACTACCGCAACCTTCGG
324 CT-GAT-CCCC-CTGCGTGCTGCCAATCCTACTACCGCAACCCTCAG
** * * *
15248613 TTCGGTCTGATCTTAGACTTG-GAATGAACTCCGTATGCTTAGACAT-CGAATGAACTCCATATG
1 CCCGGTCCGATCTTAGAC-TGAGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCATATG
*
15248676 CCT-AGCCAACCCA-CAAA
64 CCTAAGTCAACCCATCAAA
15248693 ACGACCTTGC
Statistics
Matches: 394, Mismatches: 47, Indels: 15
0.86 0.10 0.03
Matches are distributed among these distances:
365 3 0.01
366 34 0.09
367 272 0.69
368 82 0.21
369 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (367 bp):
CCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCC
TAAGTCAACCCATCAAATGAGCGTGCGGGCGCTCAACCGACTGGAGAGGCCGGTCGAACAGGCAT
AATATGCAAGCCAGGGATTAGCTCGTTCCCCCTCTGCGTCCTACCAATCCCACTGCCGGTCCTGC
TACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
ACAAAATGAGCGTACGGGCACTCAGTCAGCCAGAGAGGCAGAATGCGCAAACCAGGGATCAGCCT
GATCCCCCTGCGTGCTGCCAATCCTACTACCGCAACCCTCAG
Found at i:15249152 original size:26 final size:26
Alignment explanation
Indices: 15249123--15249175 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15249113 CCGGTCTGAT
* * *
15249123 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACCGAGAATAAACTCTGTATG
*
15249149 CTTAGACCGAGGATAAACTCTGTATG
1 CTTAGACCGAGAATAAACTCTGTATG
15249175 C
1 C
15249176 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACCGAGAATAAACTCTGTATG
Found at i:15249507 original size:26 final size:26
Alignment explanation
Indices: 15249478--15249530 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15249468 CTGGTCTGAT
15249478 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
15249504 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
15249530 C
1 C
15249531 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:15250064 original size:26 final size:26
Alignment explanation
Indices: 15250028--15250080 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15250018 CCAGTCCGAT
*
15250028 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
15250054 CTTAGACTGGGGATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
15250080 C
1 C
15250081 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:15251035 original size:26 final size:26
Alignment explanation
Indices: 15250999--15251051 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15250989 CCAGTTCGAT
15250999 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15251025 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15251051 C
1 C
15251052 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15252409 original size:159 final size:156
Alignment explanation
Indices: 15252022--15252431 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 156
15252012 AACTCCGTAT
15252022 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-GTGGCTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCG-GGCT-CTCA
* * * * * * ** **
15252086 GTCGATCGAAGAGGCAGAATGCGTAAGCCGGGGACCGACCCGGTCCCTTCTGTGTGCTGTCGATC
64 GCCGATCGAAGAGGCAAAATGCGCAAGCCGAGGACCGACCCGATCCCCTCTGCATGCTACCGATC
* * * *
15252151 CTGTTGCCATAACCCTCAGTTTGATCTGA
129 CCGCTGCCACAACCCTCAGTCTGA-CTGA
* * * * * * *
15252180 TCTTAGAC-TGGGAATGAACTTCGTATGTCGAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-CGGGCTCTCA
* * * * * *
15252244 ACCGATCGAAGAGGCATAATGAGCAAGTCGAGGATCGACCCGATCCCCCTCTGCATGCTACCGGT
64 GCCGATCGAAGAGGCAAAATGCGCAAGCCGAGGACCGACCCGAT-CCCCTCTGCATGCTACCGAT
* * *
15252309 CCCGCTGTCACAACCCTCGGTCCTG-CTAGG
128 CCCGCTGCCACAACCCTCAGT-CTGACT-GA
*
15252339 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGACGTACGGGCTCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGT-CGGGCTCTCA
*
15252403 GCCGATCGGAGAGGCAAAATGCGCAAGCC
64 GCCGATCGAAGAGGCAAAATGCGCAAGCC
15252432 AGGGATGCGC
Statistics
Matches: 201, Mismatches: 43, Indels: 15
0.78 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 88 0.44
159 108 0.54
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCGGGCTCTCAGC
CGATCGAAGAGGCAAAATGCGCAAGCCGAGGACCGACCCGATCCCCTCTGCATGCTACCGATCCC
GCTGCCACAACCCTCAGTCTGACTGA
Found at i:15253585 original size:26 final size:26
Alignment explanation
Indices: 15253549--15253601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15253539 CTGGTTTGAT
15253549 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
15253575 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
15253601 C
1 C
15253602 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:15253901 original size:196 final size:196
Alignment explanation
Indices: 15253546--15253905 Score: 472
Period size: 196 Copynumber: 1.8 Consensus size: 196
15253536 GATCTGGTTT
* * * *
15253546 GATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTACACTGGGAATGAAATCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
** * * * *
15253611 CCCATGAAATGAGCATACGGGCGTTCAGTCGACCGGAGAGGCAGAATGTGCAAGCTGGGGATCGA
66 CCCATGAAACAAGCATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGA
* *
15253676 CCCAATCCCCCCTGCGTGCTGCCGATCCTGCTGTGGGTCCTGCTGCTGCAACCCTTGGTTTGGTC
131 CCCAATCCCCCCTACATGCTGCCGATCCTGCTGTGGGTCCTGCTGCTGCAACCCTTGGTTTGGTC
15253741 C
196 C
* *
15253742 GATCTTACACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCA
1 GATCTTACACTGGGAATGAAATCCGTATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCA
* * * *
15253806 ACCCATGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGTGGCAGAATGCGTAAG-TCAGGGATC
65 ACCCATGAAACAAGCATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCT-AGGGATC
** * * **
15253870 GACCCGGTCCCCCCTATATGTTGTTGATCCTGCTGT
129 GACCCAATCCCCCCTACATGCTGCCGATCCTGCTGT
15253906 CGCAGCCTTT
Statistics
Matches: 138, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
195 1 0.01
196 136 0.99
197 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (196 bp):
GATCTTACACTGGGAATGAAATCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
CCCATGAAACAAGCATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGA
CCCAATCCCCCCTACATGCTGCCGATCCTGCTGTGGGTCCTGCTGCTGCAACCCTTGGTTTGGTC
C
Found at i:15254260 original size:26 final size:26
Alignment explanation
Indices: 15254224--15254276 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15254214 CCGGTCTGAT
*
15254224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15254250 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15254276 C
1 C
15254277 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15254921 original size:159 final size:158
Alignment explanation
Indices: 15254618--15255120 Score: 403
Period size: 159 Copynumber: 3.2 Consensus size: 158
15254608 ACTCTGTATC
* * * * *
15254618 CTTAGACAT-GGAATGAACTCCGTATTCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAG
* * * * ** * * * * *
15254682 CTGACCAGAGAGGCAGAATGCGTAAGCC-GAGGA-CCGACCCGGTCCCCTCTTACATGCTGTCAA
65 CCGATCGGAAAGGCAGAATGCACAAGCCAG-GGATCAG-CCCGATCCCC-CTTACGTGCTGCCGA
** * *
15254745 TCCTGCTGTCGCAACCCTCAGTCCGATTTGAT
127 TCCTGCTACCCCAACCCTCAGTCCGATTCGAT
* * * *
15254777 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCA-CTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG-AGCTCAG
* * * * * *
15254841 TCGATCGGAGAA-GCATAATGCACAAGCCGGGGATCAGCCTGATCCTCCTCTGCGTGCTGCCGAT
65 CCGATCGGA-AAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCT-TACGTGCTGCCGAT
* ** * **
15254905 -CTCGCTACCCCAACCCTCAGTTCGGCTGGGG
128 CCT-GCTACCCCAACCCTCAGTCCGATTCGAT
* * * * *
15254936 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACTCATGAAACGGGTGTACGGGAGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAG
* ** *
15255000 CCGATCGGAAAGGTAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTTACGTGCTGCCGATCC
65 CCGATCGGAAAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTTACGTGCTGCCGATCC
* * * *
15255065 TGCTATCGCAACCCTC-GATCC-AGTCCAAT
130 TGCTACCCCAACCCTCAG-TCCGA-TTCGAT
15255094 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15255121 TTAGACTGAG
Statistics
Matches: 266, Mismatches: 64, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
157 2 0.01
158 60 0.23
159 199 0.75
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAGC
CGATCGGAAAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTTACGTGCTGCCGATCCT
GCTACCCCAACCCTCAGTCCGATTCGAT
Found at i:15255135 original size:26 final size:26
Alignment explanation
Indices: 15255094--15255146 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15255084 CCAGTCCAAT
15255094 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15255120 CTTAGACTGAGG-ATGAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
15255146 C
1 C
15255147 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15257122 original size:158 final size:156
Alignment explanation
Indices: 15256664--15257165 Score: 461
Period size: 158 Copynumber: 3.2 Consensus size: 156
15256654 AACTCTGTAT
*
15256664 GCTTAGACTTGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
15256729 TCGGTCGGAGAGGTAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTGTTGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCC
* * * * *
15256794 TGTTACTACAACCTTTAGTTCAGTTTGA
129 TGCTACCACAACCCTCAGTTCAGTGTGA
* * * * * * * *
15256822 TCTTAGACTGGAAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGTGGGCGCTGAG
1 GCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * *
15256887 CCGATCGAAAAGGCATAATGCGCAAGCCGAGATCGGCCCGGTCCCCCTCTGTGTGCTATCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCCAGTCCCCC-CTGCGTGCTATCGATCC
* * *
15256952 CGCTGCCACAACCCTCAG-TCTGGCTGTG-
129 TGCTACCACAACCCTCAGTTC-AG-TGTGA
* * * *
15256980 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
15257045 CCGATCGGGGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCCCTGCGTGCTACCCATCC
65 CCGATCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCC
* * * * * *
15257110 TACTCCCGCAACCCTCGGTCCTGT-TCGA
129 TGCTACCACAACCCTCAGTTCAGTGT-GA
* * *
15257138 TCTTAGACTGGGAATGGACTTCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
15257166 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 24 0.09
158 220 0.82
159 24 0.09
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTG
CTACCACAACCCTCAGTTCAGTGTGA
Found at i:15257188 original size:26 final size:26
Alignment explanation
Indices: 15257139--15257191 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15257129 CCTGTTCGAT
** *
15257139 CTTAGACTGGGAATGGACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15257165 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15257191 C
1 C
15257192 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15257477 original size:355 final size:355
Alignment explanation
Indices: 15256954--15257594 Score: 851
Period size: 355 Copynumber: 1.8 Consensus size: 355
15256944 ATCGATCCCG
* * *
15256954 CTGCCACAACCCTCAGTCTGGCTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACC
* * * * ** *
15257019 CAGGAAACGGGCGTGCGGGTGCTCAACCGATCGGGGAGGCAGAATGCGCAAGTCGGGGATCGACC
66 CAGGAAACGAGCGTGCGGGCGCTCAACAGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACC
* * *
15257084 CAGTCCCCCCTGCGTGCTACCCATCCTACTCCCGCAACCCTCGGTCCTG-TTCGATCTTAGACTG
131 CAGTCCCCCCTGCGTGCTACCCATCCTACTCCCGCAACCCTCGATCC-GATCCAATCTTAGACTG
* * * * * *
15257148 GGAATGGACT-TCGTATGCTTAGAC-TGGGGATAAACTCCGTATGCCTAAGTCAACCTACGAAAC
195 GGAAAGAACTCT-GTATGCTTAGACAT-GGAATAAACTCCGTACGCCTAAGCCAACCCACGAAAC
* *
15257211 GAGCGTGCGAGTGCTCAGCCGGTCGGAGAAGCATAATGAGCAAGCCGAGGATCAGCCCGATCCCC
258 GAGCGTACGAGTGCTCAGCCAGTCGGAGAAGCATAATGAGCAAGCCGAGGATCAGCCCGATCCCC
15257276 CTCTGCGTGCTGTCGATCCCCCTGCCGGCCTCA
323 CTCTGCGTGCTGTCGATCCCCCTGCCGGCCTCA
* *
15257309 CTGCCACAACCCTCGGTCCGG-TAGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
1 CTGCCACAACCCTCAGTCCGGCT-GGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
* * *
15257373 CCATGAAACGAGCGTGCGGGCGCTCAACAGGCCGAAGAGGCAGAATGCGCGAGTCGAGGATCGAC
65 CCAGGAAACGAGCGTGCGGGCGCTCAACAGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGAC
* * * ** *
15257438 CC-GATCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCTTCGATCCGATCCAATCTTAGACT
130 CCAG-TCCCCCCTGCGTGCTACCCATCCTACTCCCGCAACCCTCGATCCGATCCAATCTTAGACT
* * * *
15257502 GGGAAAGAACTCTGTATGCTTAGACATGGAATGAATTTCGTACGTCTAAGCCAACCCACGAAACG
194 GGGAAAGAACTCTGTATGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACG
* * *
15257567 AGCGTACGGGTGCTTAGTCAGTCGGAGA
259 AGCGTACGAGTGCTCAGCCAGTCGGAGA
15257595 GGCAGAATCC
Statistics
Matches: 242, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
354 3 0.01
355 237 0.98
356 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (355 bp):
CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACC
CAGGAAACGAGCGTGCGGGCGCTCAACAGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACC
CAGTCCCCCCTGCGTGCTACCCATCCTACTCCCGCAACCCTCGATCCGATCCAATCTTAGACTGG
GAAAGAACTCTGTATGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGAG
CGTACGAGTGCTCAGCCAGTCGGAGAAGCATAATGAGCAAGCCGAGGATCAGCCCGATCCCCCTC
TGCGTGCTGTCGATCCCCCTGCCGGCCTCA
Found at i:15258030 original size:26 final size:26
Alignment explanation
Indices: 15257994--15258044 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15257984 CCGGTCCGAT
15257994 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
15258020 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTTCGTAT
15258045 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15258755 original size:26 final size:26
Alignment explanation
Indices: 15258717--15258769 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15258707 GGCTCAAAAT
15258717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15258743 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15258769 C
1 C
15258770 CAAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15259247 original size:158 final size:156
Alignment explanation
Indices: 15258743--15260134 Score: 685
Period size: 158 Copynumber: 8.8 Consensus size: 156
15258733 ACTCCGTATG
* * ** **
15258743 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCGCGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * *
15258808 CAATCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGCTCGAT-CCTCCCTGCGTGCTGTCGATCC
65 CGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCACCT-GATGCCT-CCTGCGTGCTGTCGATCC
*
15258872 TACTACCACAACCCTCGGTCCGATCTGAT
128 TACTACCACAACCCTCGGTCCGGTCTGAT
* * * * * * *
15258901 CTTAGACTAGTAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGTGTACAGGCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * * * *
15258966 CGACCGAAGAGACATAATGCGCAAGTGGGGGATCACCCCGGTCTGCCT-TTGCGTGCTGTCGGTC
65 CGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCA--CCTG-ATGCCTCCTGCGTGCTGTCGATC
* * * **
15259030 CCACTACCACAACCATCGATCCGG-CTAGGG
127 CTACTACCACAACCCTCGGTCCGGTCT-GAT
* * **
15259060 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGTTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * *
15259125 CGATCAGAA-AGGCAGAATGTGCAAGTCGAGCATCGACCTGATGCCTCCTGCGTGCTGTCGATCC
65 CGATC-GAAGAGGCAGAATGCGCAAGTCGGGGATC-ACCTGATGCCTCCTGCGTGCTGTCGATCC
**** *
15259189 TACTGTTGCAACCCTCGGTCTGGTCTGAT
128 TACTACCACAACCCTCGGTCCGGTCTGAT
* * * * * *
15259218 CTTTGACTGGGAATGAAATCCGTATGCCTAA-CCAACCCACAAAACGACCGTGCAGGCATTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * * * * *
15259282 CGATCGAAGAGGCATAATGCGCTAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCC
65 CGATCGAAGAGGCAGAATGCGCAAGTCGGGGATC-ACCTGATGCCTC-CTGCGTGCTGTCGATCC
*** * * * * **
15259347 CGTTGCCACAACCCTCGATTCGGAT-GGGG
128 TACTACCACAACCCTCGGTCCGG-TCTGAT
* * * * * *
15259376 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGCGTGCAGACGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * ** * * *
15259441 C-AGCTGGAGAGGCAGAATGTACAAG-CTAGGGATCGA-CTCGATCCCCCCTGCGTGCTG-CGGA
65 CGATC-GAAGAGGCAGAATGCGCAAGTC-GGGGATC-ACCT-GATGCCTCCTGCGTGCTGTC-GA
* * ** * *
15259502 TCCTGCTGCTGCAACCCTCAGTCCGATCTGAT
125 TCCTACTACCACAACCCTCGGTCCGGTCTGAT
* * * * * * ** ** * *
15259534 CTTAAACTAGAAATGAACTCGGTATGCATAAGTCAACCCACGAAACAAGCGTGTGGGTGCTGAGT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * * * * * * ** *
15259599 TG-TCTGAAGAGGAATAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCTCTATGTGCTGTCGGTC
65 CGATC-GAAGAGGCAGAATGCGCAAGTCGGGGATC-ACCTGATGCCTC-CTGCGTGCTGTCGATC
** * ** **
15259663 CCGCTGCCACAACCCTCGACCCGGT-TGGGG
127 CTACTACCACAACCCTCGGTCCGGTCT-GAT
** * * * *
15259693 CTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * * * * *
15259758 CGGTTGGAGAGGTAGAATGCGTAAG-CTGGGGATCAACCTGATCCCACCTACGTGCTATCGATCC
65 CGATCGAAGAGGCAGAATGCGCAAGTC-GGGGATC-ACCTGATGCCTCCTGCGTGCTGTCGATCC
** ** * * **
15259822 TACTGTCGTAACACTCGATCCGGTCCAAT
128 TACTACCACAACCCTCGGTCCGGTCTGAT
* * * * * * ** *
15259851 CTTAGACTGAGAATGAACTTCGTATGCATAAGTCAACCCATGAAACAAGCATGCAGGTGCTGAGC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* * * * * * * * * *
15259916 CGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCCTGCATGCTGTCGGT-C
65 CGATCGAAGAGGCAGAATGCGCAAGTCGGGGATC-ACCTGAT-GCCTCCTGCGTGCTGTCGATCC
* ** ** * **
15259980 TCACTGCCACAACTGTCAATCCGGAT-GGGG
128 T-ACTACCACAACCCTCGGTCCGG-TCTGAT
* * * * **
15260010 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAACG-GCCGTGCGGGCGTTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGCACTCAG
* * * * * * * *
15260074 TCG-GCCAGAGAGGCAAAATGCGTAAGCCGGGGATCGACCTGATGCCGCATGCGTGCTGTCG
64 CCGATCGA-AGAGGCAGAATGCGCAAGTCGGGGATC-ACCTGATGCCTCCTGCGTGCTGTCG
15260135 CAACCCTCAG
Statistics
Matches: 927, Mismatches: 266, Indels: 82
0.73 0.21 0.06
Matches are distributed among these distances:
156 3 0.00
157 72 0.08
158 439 0.47
159 397 0.43
160 13 0.01
161 3 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCC
GATCGAAGAGGCAGAATGCGCAAGTCGGGGATCACCTGATGCCTCCTGCGTGCTGTCGATCCTAC
TACCACAACCCTCGGTCCGGTCTGAT
Found at i:15259710 original size:317 final size:316
Alignment explanation
Indices: 15258742--15260134 Score: 1399
Period size: 317 Copynumber: 4.4 Consensus size: 316
15258732 AACTCCGTAT
* * * ** *
15258742 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCGCGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * *
15258807 CCA-ATCGGAGAGGTAGAATGCGCAAGTCGGGGATC-AGCTCGATCCTCCCTGCGTGCTGTCGAT
66 CCAGATCGGAGAGGCAGAATGCGCAAGT-GGGGATCGACCT-GATCCCCCCTGCGTGCTGTCGAT
* ** *
15258870 CCTACTACCACAACCCTCGGTCCGATCTGATCTTAGACTAGTAATGAACTCTGTATGCATAAGTC
129 CCTACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTAGAAATGAACTC-GTATGCATAAGTC
* * * **
15258935 AACCCACGAAACGAGTGTACAGGCACTGAGCCGACCGAAGA-GACATAATGCGCAAGTGGGGGAT
193 AACCCACGAAACAAGCGTGCAGGCACTGAGCCGACCGAAGAGGA-ATAATGCGCAAGCCGGGGAT
** ** * * * * *
15258999 CACCCCGGTCTGCCTTTGCGTGCTGTCGGTCCCACTACCACAACCATCGATCCGGCTAGG
257 CGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCGGATGGG
* *
15259059 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * *
15259124 CC-GATCAGAAAGGCAGAATGTGCAAGTCGAGCATCGACCTGATGCCTCCTGCGTGCTGTCGATC
66 CCAGATCGGAGAGGCAGAATGCGCAAGT-GGGGATCGACCTGATCCCCCCTGCGTGCTGTCGATC
* * * * * * * * *
15259188 CTACTGTTGCAACCCTCGGTCTGGTCTGATCTTTGACTGGGAATGAAATCCGTATGCCTAA-CCA
130 CTACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTAGAAATGAACT-CGTATGCATAAGTCA
* * * * * * *
15259252 ACCCACAAAACGACCGTGCAGGCATTGAGCCGATCGAAGAGGCATAATGCGCTAGCCGGGGATCG
194 ACCCACGAAACAAGCGTGCAGGCACTGAGCCGACCGAAGAGGAATAATGCGCAAGCCGGGGATCG
* * ** *
15259317 GCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGTTGCCACAACCCTCGATTCGGATGGG
259 GCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCGGATGGG
* * * *
15259375 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGCGTGCAGACGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* ** *
15259440 CCAGCT-GGAGAGGCAGAATGTACAAGCTAGGGATCGA-CTCGATCCCCCCTGCGTGCTG-CGGA
66 CCAGATCGGAGAGGCAGAATGCGCAAG-TGGGGATCGACCT-GATCCCCCCTGCGTGCTGTC-GA
* * *
15259502 TCCTGCTGCTGCAACCCTCAGTCCGATCTGATCTTAAACTAGAAATGAACTCGGTATGCATAAGT
128 TCCTACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTAGAAATGAACTC-GTATGCATAAGT
** ** ** * * *
15259567 CAACCCACGAAACAAGCGTGTGGGTGCTGAGTTGTCTGAAGAGGAATAATGCGCAAGCCGGGGAC
192 CAACCCACGAAACAAGCGTGCAGGCACTGAGCCGACCGAAGAGGAATAATGCGCAAGCCGGGGAT
** * * *
15259632 CGGCCCGGTCCCCCTCTATGTGCTGTCGGTCCCGCTGCCACAACCCTCGACCCGGTTGGG
257 CGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCGGATGGG
** * *
15259692 GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * * *
15259757 TC-GGTTGGAGAGGTAGAATGCGTAAGCTGGGGATCAACCTGATCCCACCTACGTGCTATCGATC
66 CCAGATCGGAGAGGCAGAATGCGCAAG-TGGGGATCGACCTGATCCCCCCTGCGTGCTGTCGATC
* * * * **
15259821 CTACTG-TCGTAACACTCGATCCGGTCCAATCTTAGACT-GAGAATGAACTTCGTATGCATAAGT
130 CTACTGCT-GCAACCCTCGGTCCGATCTGATCTTAGACTAGA-AATGAAC-TCGTATGCATAAGT
* * ** * *
15259884 CAACCCATGAAACAAGCATGCAGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGAT
192 CAACCCACGAAACAAGCGTGCAGGCACTGAGCCGACCGAAGAGGAATAATGCGCAAGCCGGGGAT
* * * * ** *
15259949 CGACCCGGTCCCCCCCTGCATGCTGTCGGTCTCACTGCCACAACTGTCAATCCGGATGGG
257 CGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCGGATGGG
* * * *
15260009 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAACG-GCCGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGCGCTCA
* ** * * * * * * *
15260073 GTC-GGCCAGAGAGGCAAAATGCGTAAGCCGGGGATCGACCTGATGCCGCATGCGTGCTGTCG
65 GCCAGATCGGAGAGGCAGAATGCGCAAG-TGGGGATCGACCTGATCCCCCCTGCGTGCTGTCG
15260135 CAACCCTCAG
Statistics
Matches: 888, Mismatches: 171, Indels: 34
0.81 0.16 0.03
Matches are distributed among these distances:
315 4 0.00
316 257 0.29
317 618 0.70
318 9 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCAGATCGGAGAGGCAGAATGCGCAAGTGGGGATCGACCTGATCCCCCCTGCGTGCTGTCGATCC
TACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTAGAAATGAACTCGTATGCATAAGTCAAC
CCACGAAACAAGCGTGCAGGCACTGAGCCGACCGAAGAGGAATAATGCGCAAGCCGGGGATCGGC
CCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGATCCGGATGGG
Found at i:15260192 original size:26 final size:26
Alignment explanation
Indices: 15260156--15260208 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15260146 TCAATCCGAT
*
15260156 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15260182 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15260208 C
1 C
15260209 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15261043 original size:26 final size:26
Alignment explanation
Indices: 15261007--15261083 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
15260997 CCAGTCTAAT
*
15261007 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
15261033 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
15261059 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAAATCCGTAT
15261084 TCCTATGTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:15261279 original size:26 final size:26
Alignment explanation
Indices: 15261241--15261293 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15261231 CCAGTCCGAT
*
15261241 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
15261267 CTTAGACAT-GGAATGAACCCCATATG
1 CTTAGAC-TGGGAATGAACCCCATATG
15261293 C
1 C
15261294 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:15261772 original size:156 final size:158
Alignment explanation
Indices: 15261267--15261768 Score: 456
Period size: 159 Copynumber: 3.2 Consensus size: 158
15261257 ACTCCATATG
* * * *
15261267 CTTAGACAT-GGAATGAACCCCATATGCCTAAGCCAACCCACGAAAGGAGCGTGCAGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
15261331 CCGATCGAAAAGGTAGAAAGTGCAAGTCGGGGATCAACCCGGTCCCCCACCTGCATGCTGTCAAT
65 CCGGTCGGAAAGGCAGAATGAGCAAGCCGGGGATCAGCCCGGT-CCCC-CCTGCGTGCTGTCGAT
* * ** ** *
15261396 CTTGCTGCCGTAACCCTCAATCC-GTCCGAT
128 CCTGTTGCCACAACCCTCGGTCCAGTTCGAT
* * * * * * *
15261426 CTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
15261491 CAGTCGGAAAAGGCATAATAAGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
66 CGGTCGG-AAAGGCAGAATGAGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATC
* * * * **
15261556 CCGTTGCCACAACCTTCGGTCCAGCTAGGG
129 CTGTTGCCACAACCCTCGGTCCAGTTCGAT
* * * *
15261586 CTTAGAAAT-GGAATGAACTCC-TATGCCTTAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
1 CTTAG-AATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15261649 CTGGTCGGAGAGGCAGAATGCGCAAG-CGGGGATTAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
65 CCGGTCGGAAAGGCAGAATGAGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
*
15261713 TGTTGCCACAACCCTCGGTCCAATTCGAT
130 TGTTGCCACAACCCTCGGTCCAGTTCGAT
*
15261742 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
15261769 TTAGACTGAG
Statistics
Matches: 265, Mismatches: 71, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
155 2 0.01
156 54 0.20
157 22 0.08
158 16 0.06
159 127 0.48
160 42 0.16
161 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAAAGGCAGAATGAGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GTTGCCACAACCCTCGGTCCAGTTCGAT
Found at i:15262112 original size:25 final size:26
Alignment explanation
Indices: 15262084--15262133 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15262074 CCAGTCCGAT
15262084 CTTAGACT-GGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
15262109 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15262134 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:15262115 original size:341 final size:341
Alignment explanation
Indices: 15261426--15262186 Score: 831
Period size: 341 Copynumber: 2.2 Consensus size: 341
15261416 TCCGTCCGAT
* *
15261426 CTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTGAGC
1 CTTAGACTGAG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGC
* * ** *
15261491 CAGTCGGAAAAGGCATAATAAGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
65 CAGGCCGAAAAGGCATAATAAGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
** * * * *
15261556 CCGTTGCCACAACCTTCGGTCCAGCTAGGGCTTAGAAATGGAATGAACTCCTATGCCTTAGCCAA
130 CCACTGCCACAACCCTCGATCCAGATAGGGCTTAGAAATGGAATGAACTCCTATGCCTAAGCCAA
* * * ** * * *
15261621 CCCACGAAATGAGCGTACGGGCACTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCGGGGATTAGC
195 CCCACGAAAAGAGCGTACGGGCACTCAACCGAACGGAGAGGCAGAATACGCAAGCAGGGATCAGC
* * * * * * *
15261686 CCGGTCCCCCCTGCGTGCTGCCGATCCTGTTGCCACAACCCTCGGTCCAATTCGATCTTAGATTG
260 CCGGTCCCCCCTACGTGCTACCGATACTGCTGCCACAACCCTCGATCCAATCCGATCTTAGACTG
*
15261751 GGAATGAACTCCGTATG
325 GGAATGAACTCCGTATA
* * *
15261768 CTTAGACTGAGATTGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG-
1 CTTAGACTGAGA-TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGC
** * * * *
15261832 CAGGCCGAAGGGGTATAATGCA-CAAGCC-AGGGATCGGTCCGATCCCCC-CTGTGTGCTACCGA
65 CAGGCCGAAAAGGCATAAT-AAGCAAGCCGA-GGATCGGCCCGATCCCCCTCTGCGTGCTACCGA
* *
15261894 TCCCACTGCCACAACCCTCGATCCGGAT-GGGACTTAGACATGGAATGAACTCCCTATGCCTAAG
128 TCCCACTGCCACAACCCTCGATCCAGATAGGG-CTTAGAAATGGAATGAACT-CCTATGCCTAAG
* *
15261958 CCAACCCATGAAACAG-GCGTGCGAGTGC-C-CAACCGAACGGAGAGGCAGAATACGCAAGCCAG
191 CCAACCCACGAAA-AGAGCGTACG-G-GCACTCAACCGAACGGAGAGGCAGAATACGCAAG-CAG
* * * * * * * *
15262020 GGATCGGCCTGGTCCCCCTTACGTGCTATCGATATTGCTGTCGCAACCCTCGATCCAGTCCGATC
252 GGATCAGCCCGGTCCCCCCTACGTGCTACCGATACTGCTGCCACAACCCTCGATCCAATCCGATC
15262085 TTAGACT-GGAATGAACTCCGTATA
317 TTAGACTGGGAATGAACTCCGTATA
* * * * * * *
15262109 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGACGCTCAGT
1 CTTAGACT-GAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGC
*
15262174 C-GGCCGAAGAGGC
65 CAGGCCGAAAAGGC
15262187 CTATCGGAGA
Statistics
Matches: 347, Mismatches: 61, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
339 3 0.01
340 51 0.15
341 168 0.48
342 123 0.35
343 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (341 bp):
CTTAGACTGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCC
AGGCCGAAAAGGCATAATAAGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCC
CACTGCCACAACCCTCGATCCAGATAGGGCTTAGAAATGGAATGAACTCCTATGCCTAAGCCAAC
CCACGAAAAGAGCGTACGGGCACTCAACCGAACGGAGAGGCAGAATACGCAAGCAGGGATCAGCC
CGGTCCCCCCTACGTGCTACCGATACTGCTGCCACAACCCTCGATCCAATCCGATCTTAGACTGG
GAATGAACTCCGTATA
Found at i:15270094 original size:149 final size:143
Alignment explanation
Indices: 15269620--15270094 Score: 419
Period size: 148 Copynumber: 3.2 Consensus size: 143
15269610 ACTCCTTATG
* *
15269620 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GG-GCTCAGC
* * *
15269685 CGGTC-AGAGAGGTAGAATGCGCAAGCGGGGATCACCCGATCCCCCTACGAGCTGTC-ATCCTGC
64 CGG-CGA-AGAGG-AGAAT--GCAAGC-GGGATC-GCCGGTCCCCCTACGTGCTG-CGATCCTGC
* * *
15269748 TACGTAACCCTCGTTCGGTCTGAT
121 CACG-AACCCTCGTCCGGTCCGAT
* * * *
15269772 CTTAGAC-TGGGAATGAACT-CTTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCTGAGCC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCAGCC
* * * *
15269835 AGCGAAGA-GATAATGTGCAAGCGAGGATCGCCGGTCCCCCT-CTGCATGCTACGGTCCGCTGCC
65 GGCGAAGAGGAGAA--TGCAAGCG-GGATCGCCGGTCCCCCTAC-G--TGCTGCGAT-C-CTGCC
* * **
15269898 AC-AACCCTCGTCTGG-CTGGGG
122 ACGAACCCTCGTCCGGTC-CGAT
* *
15269919 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCTCAGCCG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCAGCCG
*
15269984 GCCGAAGAGGCAGAATGCAAGCTGGGATCGGTCGGTCCCCCTACGTGCTGCGATCCTGCCACCGA
66 G-CGAAGAGG-AGAATGCAAGC-GGGATC-GCCGGTCCCCCTACGTGCTGCGATCCTGCCA-CGA
15270049 ACCCTCGATCCGGTCCGAT
126 ACCCTCG-TCCGGTCCGAT
*
15270068 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
15270095 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 35, Indels: 53
0.75 0.10 0.15
Matches are distributed among these distances:
144 1 0.00
145 12 0.05
146 22 0.08
147 36 0.14
148 63 0.24
149 61 0.23
150 17 0.06
151 34 0.13
152 17 0.06
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (143 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCAGCCG
GCGAAGAGGAGAATGCAAGCGGGATCGCCGGTCCCCCTACGTGCTGCGATCCTGCCACGAACCCT
CGTCCGGTCCGAT
Found at i:15270104 original size:26 final size:26
Alignment explanation
Indices: 15270068--15270120 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15270058 CCGGTCCGAT
*
15270068 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15270094 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15270120 C
1 C
15270121 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15271685 original size:26 final size:26
Alignment explanation
Indices: 15271647--15271699 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15271637 GGCTCAAAAT
15271647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15271673 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15271699 C
1 C
15271700 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15272180 original size:26 final size:26
Alignment explanation
Indices: 15272151--15272203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15272141 CCAATCCGAT
* *
15272151 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15272177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15272203 C
1 C
15272204 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15273352 original size:26 final size:26
Alignment explanation
Indices: 15273298--15273353 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
15273288 CTGATCCGAT
* **
15273298 CTTAGACTGGGAATGAACTCCGTGTG
1 CTTAGACTGGGAATAAACTCCGTACG
15273324 CTTAGACTAGGG-ATAAACTCCGTACG
1 CTTAGACT-GGGAATAAACTCCGTACG
15273350 CTTA
1 CTTA
15273354 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACG
Found at i:15274343 original size:25 final size:26
Alignment explanation
Indices: 15274309--15274360 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15274299 TTGGTCCGAT
15274309 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15274334 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15274360 C
1 C
15274361 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15275181 original size:26 final size:26
Alignment explanation
Indices: 15275152--15275204 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15275142 TCGGTTCGAT
*
15275152 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
15275178 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15275204 C
1 C
15275205 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15277779 original size:21 final size:21
Alignment explanation
Indices: 15277732--15277772 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
15277722 NNNNNNNNNN
15277732 CGATCCTACTGCCGTAACCCT
1 CGATCCTACTGCCGTAACCCT
15277753 CGATCCT-CTG-CGTAACCCT
1 CGATCCTACTGCCGTAACCCT
15277772 C
1 C
15277773 TCGATCCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
20 3 0.15
21 7 0.35
ACGTcount: A:0.17, C:0.44, G:0.15, T:0.24
Consensus pattern (21 bp):
CGATCCTACTGCCGTAACCCT
Found at i:15278201 original size:26 final size:26
Alignment explanation
Indices: 15278163--15278215 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15278153 CCGATCCGAT
*
15278163 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15278189 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15278215 C
1 C
15278216 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15278687 original size:157 final size:154
Alignment explanation
Indices: 15278189--15278687 Score: 443
Period size: 157 Copynumber: 3.2 Consensus size: 154
15278179 ACTTCGTATG
* * *
15278189 CTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * *
15278254 CAACCAGAGAGGCAGAATACGTAAGCTGGGGATCGACCTGGTCCCCCCTGTGTGCTGTCGATCCT
66 CGACCAGAGAGGCAGAATGCGTAAGC-GGGGATCGACC-GGT-CCCCCTGCGTGCTGTCGATCCT
*** * * *
15278319 G-TTGTGCAACCCTTGGTTCGATCCGAT
128 GCTACCGCAACCCTCGGTCCG-TCTGAT
* * * * ** *
15278346 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGTGTGTGCAAGCG-TGGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-CA
* * * * *
15278409 ACCGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGGT-
64 ACCGACCAGAGAGGCAGAATGCGTAAG-CGGGGATC-GACCGGTCCCC-CTGCGTGCTGTCGATC
** * * **
15278473 CTCGCTACCATAACGCTCGGTCCGACTGGGG
126 CT-GCTACCGCAACCCTCGGTCCGTCT-GAT
* * * *
15278504 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAACGGGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * *
15278569 CGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATC-AGCCAGTCCCTCCTGCGTGCTGCCGATCCT
66 CGACCAGAGAGGCAGAATGCGTAAG-CGGGGATCGA-CCGGTCCC-CCTGCGTGCTGTCGATCCT
*
15278633 GCTACCGCAACCCTCGGTCCAGTCTAAT
128 GCTACCGCAACCCTCGGTCC-GTCTGAT
*
15278661 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
15278688 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 60, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
156 9 0.03
157 156 0.58
158 100 0.37
159 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCAGAGAGGCAGAATGCGTAAGCGGGGATCGACCGGTCCCCCTGCGTGCTGTCGATCCTGCT
ACCGCAACCCTCGGTCCGTCTGAT
Found at i:15278697 original size:26 final size:26
Alignment explanation
Indices: 15278661--15278716 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15278651 CCAGTCTAAT
15278661 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
15278687 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15278713 CTTA
1 CTTA
15278717 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15280296 original size:158 final size:158
Alignment explanation
Indices: 15280006--15280595 Score: 528
Period size: 159 Copynumber: 3.7 Consensus size: 158
15279996 AGGTCGATCA
* * * *
15280006 GAGAGGC-GTAATGTGCAAGCCGGGGATC-AGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCT
1 GAGAGGCAG-AATGCGCAAGCCGGGGATCGA-CCCGAT-CCCCTCTGCGTGCTATCGATCCTGCT
** * *** ** *
15280069 GTCACAACCCTCGGTCCG-GCTGGGGGGTTAGACACGGAATGAACTCCGTATGGCTAAGCCAACC
63 ACCACAACCCTCGGTCCGATCT--GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
15280133 CACGAAACGAGCGTGCGGGCACCCAGTCGACCG
126 CACGAAACGAGCGTGCGGGCACTCAGTCGGCCG
* * * * *
15280166 GAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCTTGCTACT
1 GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCTGCGTGCTATCGATCCTGCTACC
* * * **
15280231 ACAACGCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTTAACCCACGA
66 ACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * *
15280296 AATGAGCGTGCAGGCACTGAGTCGGCTG
131 AACGAGCGTGCGGGCACTCAGTCGGCCG
* * ** * * *
15280324 GAGAGGCATAATGCGTAAGCCAAGGATTGACCCGATCCCCTACTGCGTGCTATC-ACTCCCGTTA
1 GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCT-CTGCGTGCTATCGA-TCCTGCTA
** *
15280388 CCACAACCCTCGGTCCGA-CTGGGGCTTAGAGAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
64 CCACAACCCTCGGTCCGATCT-GATCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * ** ** *
15280451 ACAAAACGGGCATGCGGGTGCTCAACCGGTCG
127 ACGAAACGAGCGTGCGGGCACTCAGTCGGCCG
* * * * * * *
15280483 AAGAGGCAGAATTCGCAAGCCGGGGATCGACCCGGTCCCC-ATACGTGCTACCGATCCTGCTGCC
1 GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCTGCGTGCTATCGATCCTGCTACC
** * *
15280547 GTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
66 ACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
15280596 TTAGACTAGG
Statistics
Matches: 340, Mismatches: 80, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 54 0.16
158 98 0.29
159 154 0.45
160 32 0.09
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCTGCGTGCTATCGATCCTGCTACC
ACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGCACTCAGTCGGCCG
Found at i:15280610 original size:26 final size:26
Alignment explanation
Indices: 15280569--15280621 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15280559 CCGATCCGAT
*
15280569 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15280595 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15280621 C
1 C
15280622 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15280719 original size:673 final size:677
Alignment explanation
Indices: 15279425--15280899 Score: 1742
Period size: 673 Copynumber: 2.2 Consensus size: 677
15279415 CCGCACGCTC
* * * *
15279425 AGACATGGAATGAACTGCGTATGCCTAAGCCAACTCACGAAACAAGCGTGCGGGCGCCCAGCCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CCCAGTCGA
** * *
15279490 TCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTACTTGCTGTCAATCCCGCTG
65 TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTGTCAATCCCGCTA
* * * *
15279555 CCACAACCCTCAATTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCAC
130 CCACAACCCTCAATCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCATAAGTCAACCCAC
* * ** * *
15279620 GAAACGAGTGTACGGGCGTTGAGTCGGTCGAAAAAGCATAATGCGTAATCCAAGGTTTGACCCGA
195 GAAACGAGCGTACAGGCACTGAGTCGGTCGAAAAAGCATAATGCGTAAGCCAAGGATTGACCCGA
* * * *
15279685 TCCCCCGCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGA
260 TCCCCCACTGCGTGCTATCGATCCCGCTACCACAACCCTCGGTCGAGCTGGGGCTTAGACATGGA
* * * *
15279750 ATGAACTCCCTATGCCTAAGCCAACCCTCGAAACAGGCGTGCGGGCGCTCAACTGGCCCGAGAGG
325 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGGCGCTCAACCGGCCCGAGAGG
** * * **
15279815 CAGAATGCGCAAGTTGGAGATCGACCTGGTCCCCCCTGTGTACAACCGATCCTACTACCGCAACC
390 CAGAATGCGCAAGCCGGAGATCGACCCGGTCCCCCATACGTACAACCGATCCTACTACCGCAACC
* *
15279880 CTCGAATCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCAT
455 CTCGAATCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCAT
* * * * * *
15279945 GTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGTCGATCAGAGA
520 ATGCCTAAGTCAACCCACAAAACGAGCGTGCAGACACTCAGTCGACCGAAGAGGCCGATCAGAGA
* ** *
15280010 GGCGTAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGC-G-TGC-T-G-T-CGGTCCTGCT
585 GGCATAATACGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCAGCTGCATCGATCCGGTCCTGCT
** *
15280069 GTCACAACCCTCGGTCCGGCTGGGGGGTT
650 ACCACAACCCTCGGTCCGG-TGGGGGCTT
* *
15280098 AGACACGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CCCAGTCGA
* * * **
15280163 CCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCTTGCT
65 TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCC-CTACGTGCTGTCAATCCCGCT
* * ** * *
15280228 ACTACAACGCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTTAACCCA
129 ACCACAACCCTCAATCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCATAAGTCAACCCA
* * * * *
15280293 CGAAATGAGCGTGCAGGCACTGAGTCGG-CTGGAGAGGCATAATGCGTAAGCCAAGGATTGACCC
194 CGAAACGAGCGTACAGGCACTGAGTCGGTC-GAAAAAGCATAATGCGTAAGCCAAGGATTGACCC
* * *
15280357 GATCCCCTACTGCGTGCTATC-ACTCCCGTTACCACAACCCTCGGTCCGA-CTGGGGCTTAGAGA
258 GATCCCCCACTGCGTGCTATCGA-TCCCGCTACCACAACCCTCGGT-CGAGCTGGGGCTTAGACA
* * * *
15280420 TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGTGCTCAACCGG-TCGA
321 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGGCGCTCAACCGGCCCG-
* * * * * *
15280484 AGAGGCAGAATTCGCAAGCCGGGGATCGACCCGGT-CCCCATACGTGCTACCGATCCTGCTGCCG
385 AGAGGCAGAATGCGCAAGCCGGAGATCGACCCGGTCCCCCATACGTACAACCGATCCTACTACCG
* *
15280548 TAACCCTCG-GTCCGATCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTAGGGATGA
450 CAACCCTCGAAT-CGATCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTAGGGATGA
* ** *
15280611 ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGATGCTCAG-CTGGCCGAAGAGGCCA
513 ACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAGACACTCAGTC-GACCGAAGAGGCC-
* *
15280675 GA-C-GAAGAGGCATAATACGCAAGCTGGGGATTAGCCCAGTCCCCCTCTGCATGCTGCAAATCC
576 GATCAG-AGAGGCATAATACGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCA-GCTGC--AT--
* * *
15280738 CGATGCCGGTCCTGCTACCACAACCCTTGGTCTGGTTGGGGCTT
635 CGAT-CCGGTCCTGCTACCACAACCCTCGGTCCGGTGGGGGCTT
* * * * *
15280782 AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAAATTG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GG-GCCCCAGTCG
* * * * *
15280847 -TCAGAGAGGCAGAATGCACAAGCCGAGGATCGACTCGATCCCCCCTATGTGCT
64 ATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGAT-CCCCCTACGTGCT
15280900 ACCGATCCTG
Statistics
Matches: 673, Mismatches: 104, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
672 5 0.01
673 269 0.40
674 257 0.38
675 3 0.00
676 3 0.00
679 1 0.00
682 1 0.00
683 1 0.00
684 96 0.14
685 35 0.05
686 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (677 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCCCAGTCGAT
CGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTGTCAATCCCGCTAC
CACAACCCTCAATCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCATAAGTCAACCCACG
AAACGAGCGTACAGGCACTGAGTCGGTCGAAAAAGCATAATGCGTAAGCCAAGGATTGACCCGAT
CCCCCACTGCGTGCTATCGATCCCGCTACCACAACCCTCGGTCGAGCTGGGGCTTAGACATGGAA
TGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGGCGCTCAACCGGCCCGAGAGGC
AGAATGCGCAAGCCGGAGATCGACCCGGTCCCCCATACGTACAACCGATCCTACTACCGCAACCC
TCGAATCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCATA
TGCCTAAGTCAACCCACAAAACGAGCGTGCAGACACTCAGTCGACCGAAGAGGCCGATCAGAGAG
GCATAATACGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCAGCTGCATCGATCCGGTCCTGCTA
CCACAACCCTCGGTCCGGTGGGGGCTT
Found at i:15282210 original size:26 final size:26
Alignment explanation
Indices: 15282172--15282224 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15282162 GGCTCAAAAT
15282172 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15282198 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15282224 C
1 C
15282225 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15283508 original size:26 final size:26
Alignment explanation
Indices: 15283470--15283522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15283460 CCGATCCGAT
15283470 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15283496 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15283522 C
1 C
15283523 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15283758 original size:158 final size:159
Alignment explanation
Indices: 15283496--15283787 Score: 365
Period size: 158 Copynumber: 1.8 Consensus size: 159
15283486 ACTCCATATG
* * * ** *
15283496 CTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACAAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAACGTGCGGGCACTCAAC
* *
15283561 CGATCAGAGAGGTAGAATACGCAAGCTGGGGATCGACCCGATC-CCCCCTGCGTGTTGTCGATCC
66 CGATCAGAGAGGCAGAATACGCAAGCTGGGGATCGACCCGATCTCCCCCTGCGTGCTGTCGATCC
15283625 TGCTACTGCAACCCTTGATCCGGTTTGAT
131 TGCTACTGCAACCCTTGATCCGGTTTGAT
* * * * *
15283654 CTTAGAC-TAGGATTGAACTCCGTATGCCAAAGCCAACCCACGAAATGAACGTGTGGGCACTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAACGTGCGGGCACTCAA
* * * * ** *
15283718 CCGGTCGGAGAGGCATAATGCGCAAG-TCGGGGATCGACCCGATCTCCCTTTGCGTGCTGTCGGT
65 CCGATCAGAGAGGCAGAATACGCAAGCT-GGGGATCGACCCGATCTCCCCCTGCGTGCTGTCGAT
15283782 CCTGCT
129 CCTGCT
15283788 GTCACAACTT
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
157 2 0.02
158 88 0.79
159 21 0.19
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAACGTGCGGGCACTCAAC
CGATCAGAGAGGCAGAATACGCAAGCTGGGGATCGACCCGATCTCCCCCTGCGTGCTGTCGATCC
TGCTACTGCAACCCTTGATCCGGTTTGAT
Found at i:15284006 original size:26 final size:26
Alignment explanation
Indices: 15283966--15284016 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15283956 CGGTCTGATC
15283966 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
15283992 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15284017 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:15284727 original size:26 final size:26
Alignment explanation
Indices: 15284676--15284727 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15284666 GGCTCAAAAT
*
15284676 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15284702 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15284728 GTTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15285621 original size:26 final size:26
Alignment explanation
Indices: 15285583--15285635 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15285573 GGCTCAAAAT
15285583 CTTAGACTGGGAATCAA-CTCCGTATG
1 CTTAGACTGGGAAT-AACCTCCGTATG
15285609 CTTAGACAT-GGAATAACCTCCGTATG
1 CTTAGAC-TGGGAATAACCTCCGTATG
15285635 C
1 C
15285636 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAACCTCCGTATG
Found at i:15285684 original size:907 final size:885
Alignment explanation
Indices: 15283812--15285691 Score: 2540
Period size: 907 Copynumber: 2.1 Consensus size: 885
15283802 TCTGGCTGGG
* * * *
15283812 GCTTAGACATGGAATAAACTCCCTATGCCGAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAAT-AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * ** * *
15283877 TCGGCCGGAGAGCCAGAATGCATAAGCCAGGGACCGGCCCGGTCCCTCTTGTGTGCTCCTGTTGT
65 TCGGCCGGAGAGGCAGAATACATAAGCCAGGGACCGGCCCGGTCCCTCCTACGTGCTCCTGCTAT
* * * *
15283942 CGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGGATGA
130 CGCAACCCTCAGTCCGATCTGATCGTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
*
15284007 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACCCAGCCGACTAGAGAGGCAGG
195 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACCCAGCCGACTAGAGAGGCAAG
* * *
15284072 ATGCGCAAGCTGAGGATCGAATGGGTGGTTGGTGGGTTCAAGCACATCTTCATATTTCTGCCATG
260 ATGCGCAAGCGGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATG
* *
15284137 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCCTAAGCCTTTTTGTGAAATTCGT
325 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCTTGTGAAATTCGT
* *
15284202 GGCAAGACGACCTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
390 GGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAA
* * *
15284267 AAATTTTTTAGAAAAAGTTGTCCCCAAATTTAGTAGAGATGATCCTTGTATTTTTGCTGGCATGT
455 AAATTTTTTAGAAAAAGTTGTCCCCAAATTTAGTAGAGATAATCCTTGTATTTTTACTGGCATGC
*
15284332 ACAAAAAAAACTCGAAGCAAAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCACCATTTCATACA
520 ACAAAAAAAACTCGAAGCAAAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCACCATTTCAGACA
* * * *
15284397 CTTTAATGGCTATTGGCATCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGTTGTGAGTTCTC
585 CTTTAATGGCTACTGGCAGCAAACCTAAAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTC
*
15284462 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTACCCCCATCGCTCATCATGT
650 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTACCCCCATCGCTCATCATGT
* * * *
15284527 GCGCACAGCCCCCCCGGCCCCCCCAATCGCCAGAACCCCCAAAGCCGTCGGTTAGGCTCTCTGGG
715 GCGCACA---CCCCCGGCCCCCACAATCGCCAGAACCCCCAAAGCCGCCGGTTAGGCTCTCCGAG
*
15284592 GGTGCTCCGACGATGGTGCCCCGGGCAAAAAAAATACGGCACCAACACATGCCCGAGCCCAGCAT
777 GGTGCTCCGACGATGGTGCCCCGGGCAAAAAAAATACGGCACCAACACACGCCCGAGCCCAGCAT
* * * *
15284657 GTGCATTGTGGCTCAAAATCTTAGACTGGGAATGAACTTCATAT
842 ATGCACTGTGGCTCAAAATCTTAGACTGGGAATCAACTCCATAT
** * * *
15284701 GCTTAGACATGGAATGAACTCCGTATGGTTAAGTCAACCCATGAAACGAGCTTGCGGGCGCTCAG
1 GCTTAGACATGGAAT-AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
15284766 TCGACCGGAGAGGCAGAATACGTAAGGGCCCGGGATCGGCCTGGTCCCTCCTACGTGCTCTTGCT
65 TCGGCCGGAGAGGCAGAATACATAA--GCCAGGGACCGGCCCGGTCCCTCCTACGTGCTCCTGCT
* * *
15284831 ATCGTAACCCTCGGTCCGATCTGATCGTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
128 ATCGCAACCCTCAGTCCGATCTGATCGTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
* * * *
15284896 GAACTCCGTATGCCTAAGGTCAACCCACG-AACAGACGTCGTGGCGGGCGGCTCAGCCGCCT-TA
193 GAACTCCGTATGCCTAA-GTCAACCCACGAAAC-GA-G-CGT-GCGGGC-ACCCAGCCGACTAGA
15284959 GAGGCAAGATGCCCGCCAAGCCGGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCAT
252 GAGGCAAGATG--CG-CAAG-CGGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCAT
*
15285024 ATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCT
313 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCT
*
15285089 TGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTT
378 TGTGAA-ATTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTT
* *** *
15285154 CGGGATTTTTT-AAAATTTTTTAGACAGATTTTTGTCCCCAAATTTGGTAGA-ATAATCCTTGTA
442 CGAGATTTTTTAAAAATTTTTTAGA-A-AAAGTTGTCCCCAAATTTAGTAGAGATAATCCTTGTA
* **
15285217 TTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGCGGAGAAGATTTTGTGACCGTT
505 TTTTTACTGGCATGCACAAAAAAA---A-C-------TCGAAGCAAAGAAGATTTTGTGACCGTT
*
15285282 TGAAAAAAGTGTC-CCTATTTTC-GACACTTTAATGGTTACTGGCAGCAAACCTAAAAAATCTCA
559 TGAAAAAAGTGTCACC-A-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAAAAAATCTCA
15285345 AATGCTCTTTAAGTGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
622 AATGCTCTTTAAG-GGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* **
15285409 CAAGTACC-AGCCCCCATCGCAT-ATCATGTGCGCACA-CCTCGGCCCCCACAATCATC-GAAAC
686 CAAGTACCTA-CCCCCATCGC-TCATCATGTGCGCACACCCCCGGCCCCCACAATCGCCAG-AAC
* * ** *
15285470 CCCCAAAGCTGCCGGTTAGGCTCTCCGAGGGTGCTCTGGGGATGGTGCCCCGGGCGAAAAAAATA
748 CCCCAAAGCCGCCGGTTAGGCTCTCCGAGGGTGCTCCGACGATGGTGCCCCGGGCAAAAAAAATA
* * **
15285535 TGGCACCAGCACACGCTTGAGCCCAGCATATGCACTGTGGCTCAAAATCTTAGACTGGGAATCAA
813 CGGCACCAACACACGCCCGAGCCCAGCATATGCACTGTGGCTCAAAATCTTAGACTGGGAATCAA
*
15285600 CTCCGTAT
878 CTCCATAT
* * * *
15285608 GCTTAGACATGGAATAACCTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATAA-CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* *
15285673 CCGGCCGGAGAGGTAGAAT
65 TCGGCCGGAGAGGCAGAAT
15285692 GCGCAAGCTG
Statistics
Matches: 862, Mismatches: 96, Indels: 48
0.86 0.10 0.05
Matches are distributed among these distances:
889 76 0.09
891 107 0.12
892 13 0.02
893 1 0.00
894 3 0.00
895 17 0.02
896 9 0.01
897 2 0.00
898 4 0.00
899 122 0.14
900 98 0.11
901 20 0.02
903 1 0.00
904 1 0.00
906 3 0.00
907 208 0.24
910 3 0.00
911 166 0.19
912 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
GCTTAGACATGGAATAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
CGGCCGGAGAGGCAGAATACATAAGCCAGGGACCGGCCCGGTCCCTCCTACGTGCTCCTGCTATC
GCAACCCTCAGTCCGATCTGATCGTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACCCAGCCGACTAGAGAGGCAAGA
TGCGCAAGCGGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGC
CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCTTGTGAAATTCGTG
GCAAGACGACCCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAA
AATTTTTTAGAAAAAGTTGTCCCCAAATTTAGTAGAGATAATCCTTGTATTTTTACTGGCATGCA
CAAAAAAAACTCGAAGCAAAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCACCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTAAAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCA
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTACCCCCATCGCTCATCATGTG
CGCACACCCCCGGCCCCCACAATCGCCAGAACCCCCAAAGCCGCCGGTTAGGCTCTCCGAGGGTG
CTCCGACGATGGTGCCCCGGGCAAAAAAAATACGGCACCAACACACGCCCGAGCCCAGCATATGC
ACTGTGGCTCAAAATCTTAGACTGGGAATCAACTCCATAT
Found at i:15286800 original size:26 final size:26
Alignment explanation
Indices: 15286762--15286814 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15286752 GGCTCAAAAT
15286762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15286788 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15286814 C
1 C
15286815 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15287300 original size:26 final size:26
Alignment explanation
Indices: 15287264--15287316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15287254 CCGGTCCGAT
15287264 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15287290 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15287316 C
1 C
15287317 CTGGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15290215 original size:159 final size:156
Alignment explanation
Indices: 15289824--15290319 Score: 436
Period size: 158 Copynumber: 3.1 Consensus size: 156
15289814 AACTCCACAT
* * *
15289824 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGTGGGCGCTC-A
* * *
15289889 CCGATCGGAGAGGCAGAATGCATAAGCCGGGGATC-AGCCCGGTCCCTCCTTCGTGCTATCGATA
65 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGA-CCCGGTCCC-CCTTCGTGCTATCCATA
* *
15289953 CTGCTACCGTAACCTTCGGTCCGGTCTGA
128 CTGCTACCATAACCCTCGGTCCGGTCTGA
* * * ** * *
15289982 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCGTAAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGTGGGCGCTCA
* *
15290046 CCTGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCCCCC-TC-TGCGTACTGCCA
65 CC-GGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTTCGTGC-TA-T-CCA
* * *
15290109 GT-CTCGCTGCCATAACCCTCGGTTCGG-CTGGG
126 -TACT-GCTACCATAACCCTCGGTCCGGTCT-GA
* *
15290141 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGA-GCGTGTGGGCGCTCA
* * * * * * *
15290205 GTCGGCCGGAGAGGCAGAATGAGCAAGTCGGGGATTGGCCCGGTCCCCCCTAT-GTGCTA-CCGA
65 -CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGT-CCCCCT-TCGTGCTATCC-A
* * ** * * *
15290268 TCCTGCTGCCGCAACCCTTGGTCCGATCCGA
126 TACTGCTACCATAACCCTCGGTCCGGTCTGA
*
15290299 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
15290320 TGCATGCTTA
Statistics
Matches: 272, Mismatches: 46, Indels: 40
0.76 0.13 0.11
Matches are distributed among these distances:
155 3 0.01
156 4 0.01
157 8 0.03
158 135 0.50
159 109 0.40
160 7 0.03
161 2 0.01
162 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGTGGGCGCTCAC
CGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTTCGTGCTATCCATACTG
CTACCATAACCCTCGGTCCGGTCTGA
Found at i:15290336 original size:26 final size:26
Alignment explanation
Indices: 15290300--15290352 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15290290 CCGATCCGAT
15290300 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
* *
15290326 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
15290352 C
1 C
15290353 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:15290992 original size:26 final size:26
Alignment explanation
Indices: 15290956--15291008 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15290946 CCAGTCCGAT
*
15290956 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
* * *
15290982 CTTAGAGTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
15291008 C
1 C
15291009 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:15292189 original size:501 final size:492
Alignment explanation
Indices: 15291137--15292432 Score: 1314
Period size: 501 Copynumber: 2.6 Consensus size: 492
15291127 TATCGATCCT
** * *
15291137 GCTGCCACAACCCTCGATCCGGTTGTGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 GCTGCCACAACCCTCG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
15291202 CCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
65 CCACGAAACG-GCGTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAG-CGGGGATCGGC
* *
15291267 CCGATCCCCCCTGCGT-CTTGTCGATCCTGCTGCTGGTCCCACTGCCAGAACCCTCGGTCCGGT-
128 CTGATCCCCCCTGCGTGC-TATCGAT-C--CTGCT-GT----C-G-C--AACCCTCGGTCCGGTC
* * * * *** *
15291330 TCGATCTTAGACTGGGAATGAACTCCGTATGCTTACACATGGAATGAACTCCATACATCTAAGCC
180 T-GATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTC
* * * * * * **
15291395 AACCCACGAAACAAGCGTGTGGGCGCCCAGCCGGTCGAAGAGGTAGAATGCCCAAGCCAGGGATT
243 AACCCACGAAACAAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCCCAAGCCAGAGACC
* * * * ** * * *
15291460 GGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCGTGTTGTCGGTCCGATCCAATCTTAGACTGGG
308 GGCCCGATCCCCCCTACGTACTGTCAATCCTGCGTGTCCTCGGTCCAATCCAATCTTACACTAGG
* * * *
15291525 AATGAACTTCGTATGCCTAAGTCAACCCATAAAATGAGCGTTCGGGCACTGAGCCGGCCGGAGAG
373 AATGAACTTCGTATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAG
* * * * * * *
15291590 GCATAATGCACAAACCAGGGATCAGCTCGGTCCCCTTCTGCATGCTGTCGGTCTC
438 GCACAATGCACAAACCAAGGATCAACCCGGTCCCCCTCTGCATGCTGCCGGTCCC
*
15291645 GCTACCACAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTC-GTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
15291709 CCCACGAAACAGGCGTACGGGCGCTTAGCCGACCGAAGAGGCAGAATACGCAAGCTGGGGATCGG
64 CCCACGAAAC-GGCGTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGC-GGGGATCGG
* * * *
15291774 CCTGATCCCCCCAGCATGCTATCGATCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACT
127 CCTGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACT
* * **
15291839 GAGAATGAACTCCATAAGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
192 GAGAATGAACTCCGTATGCTTAGACTG-GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
** * *
15291904 AGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGTATGCCAGAGACCGGCCCGATCCCTC
256 AGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCCCAAGCCAGAGACCGGCCCGATCCCCC
* * ***
15291969 CTACTTACTGTCAATCCTTC-TACCGTAACCCTCGGTCCAATTTGATCTTACACTAGGAATGAAC
321 CTACGTACTGTCAATCCTGCGT---GT---CCTCGGTCCAATCCAATCTTACACTAGGAATGAAC
* * ** *
15292033 TTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGTCGTTGAGCCGATCGAAGAGGCACAAT
380 TTCGTATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCACAAT
** *
15292098 GCACAAGTCAAGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGGTCCC
445 GCACAAACCAAGGATCAACCCGGTCCCCCTCTGCATGCTGCCGGTCCC
*
15292146 GCTGCCACAATCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * * * *
15292211 CCACGAAACGGGCATTCGGGGGCTCAGCCGGCAGGAA-TGCCAGAATGCACAAGCCGAGATCAG-
65 CCACGAAAC-GGCGTACGGGCGCTCAGCCGGC-CGAAGAGGCAGAATGCGCAAGCGGGGATCGGC
* * * ** * * *
15292274 CTCGGT-CCCCCTGTGTGCTACCGATCCTGCTACCGTAACACTCGGTCCGGTCCGATCTTAGACT
128 CT-GATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACT
* * *
15292338 -AGGAATGAACTTCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
192 GA-GAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* *
15292402 AAGCGTGCGGG-AGCTCAGCAGGCCGGAGAGG
255 AAGCGTGCGGGCA-CTCAGCCGGTCGGAGAGG
15292433 TCGGTCGGAG
Statistics
Matches: 656, Mismatches: 113, Indels: 47
0.80 0.14 0.06
Matches are distributed among these distances:
495 3 0.00
496 142 0.22
497 1 0.00
498 5 0.01
499 130 0.20
500 10 0.02
501 220 0.34
502 4 0.01
504 2 0.00
505 4 0.01
507 2 0.00
508 130 0.20
509 3 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (492 bp):
GCTGCCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGCGTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCGGGGATCGGCCTG
ATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGA
ATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
GCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCCCAAGCCAGAGACCGGCCCGATCCCCCCTACG
TACTGTCAATCCTGCGTGTCCTCGGTCCAATCCAATCTTACACTAGGAATGAACTTCGTATGCAT
AAGTCAACCCATAAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCACAATGCACAAACCAA
GGATCAACCCGGTCCCCCTCTGCATGCTGCCGGTCCC
Done.