Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 95 of 138
Found at i:15292792 original size:158 final size:159
Alignment explanation
Indices: 15292504--15292958 Score: 545
Period size: 159 Copynumber: 2.9 Consensus size: 159
15292494 AATCCCACTG
* * * ** * * *
15292504 CTAGTCCTGTTGCCACAACCCTCGGTCTGACTCAGGCTTAGACATGGAATAAACTTCGTATCCCT
1 CTAGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATAAACTCCATATGCCT
* * * * *
15292569 AAGCCAGCCCACGGAACGAGCTTGCAGGCTCTCAGTCGGCCAAAGAGGCATAATGCACAAGCCGG
66 AAGCCAGCCCACGAAACGAGCGTGCGGGCTCTCAGCCGACCAAAGAGGCATAATGCACAAGCCGG
15292634 GGATCGGCCT-GTCCCCCTTTACGTGCTA
131 GGATCGGCCTGGTCCCCCTTTACGTGCTA
* * *
15292662 CTAGTCCTGCTGCCACAACCCTTGATCCGATTGGGGCTTAGACATGGAATGAACTCCATATGCCT
1 CTAGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATAAACTCCATATGCCT
15292727 AAGCCAGCCCACGAAACGAGCGTGCGGGCTCTCAGCCGACCGAAA-AGGCATAATGCACAAGCCG
66 AAGCCAGCCCACGAAACGAGCGTGCGGGCTCTCAGCCGACC-AAAGAGGCATAATGCACAAGCCG
* **
15292791 GGGATCGGCCTGGTCCTCCTTTGTGTGCTA
130 GGGATCGGCCTGGTCCCCCTTTACGTGCTA
* * * * * *
15292821 CCAGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGGCAGGGAATAAACTCCCTATGCCT
1 CTAGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATAAACTCCATATGCCT
* * * * * * * * * * * * *
15292886 AAGCCAACCCACAAAACGGGCGTACGGGCACTCAACCGGCCAGAGAGGCAGAATGTATAAGACAG
66 AAGCCAGCCCACGAAACGAGCGTGCGGGCTCTCAGCCGACCAAAGAGGCATAATGCACAAGCCGG
15292951 GGATCGGC
131 GGATCGGC
15292959 TCGATCCCCC
Statistics
Matches: 253, Mismatches: 41, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
158 122 0.48
159 131 0.52
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
CTAGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATAAACTCCATATGCCT
AAGCCAGCCCACGAAACGAGCGTGCGGGCTCTCAGCCGACCAAAGAGGCATAATGCACAAGCCGG
GGATCGGCCTGGTCCCCCTTTACGTGCTA
Found at i:15293882 original size:26 final size:26
Alignment explanation
Indices: 15293846--15293898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15293836 CTAGTCCGAT
15293846 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15293872 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15293898 C
1 C
15293899 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15294229 original size:26 final size:26
Alignment explanation
Indices: 15294200--15294252 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15294190 GCGGTCTGAT
15294200 CTTAGACTA-AGACTGAACTCTGTATG
1 CTTAGACTAGAGA-TGAACTCTGTATG
*
15294226 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGAGATGAACTCTGTATG
15294252 C
1 C
15294253 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGAGATGAACTCTGTATG
Found at i:15295643 original size:26 final size:26
Alignment explanation
Indices: 15295614--15295666 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15295604 TCGGTCTGAT
15295614 CTTAGA-CTAGGAATGAACTTCGTATG
1 CTTAGACCT-GGAATGAACTTCGTATG
15295640 CTTAGACCTGGAATGAACTTCGTATG
1 CTTAGACCTGGAATGAACTTCGTATG
15295666 C
1 C
15295667 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACCTGGAATGAACTTCGTATG
Found at i:15295814 original size:185 final size:180
Alignment explanation
Indices: 15295459--15295822 Score: 399
Period size: 185 Copynumber: 2.0 Consensus size: 180
15295449 TCGACTGGGG
* * ** *
15295459 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACCATAAACGGGTGTGTGGGCACTCAGCCG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACCATAAAAGAGCATGCGGGCACTCAGCCG
* * * * *
15295524 ATCGAGAGGTAGAATGCACAAGCCGAGGATTAGCCCGGTCCCCCCTGCGTGCCGCCGATCCTGCT
66 ATCGAGAGGCAAAATGCACAAGCCGAGGATTAGCCCGGTCCCCCCTACATGCCACCGATCCTGCT
** * * * *
15295589 GTCGCAACCCTCGTTTCGGTCTGATCTTAGACTAGGAATGAACTTCGTAT
131 ACCGCAACCCTCGTTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* * * * *
15295639 GCTTAGACCTGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAAAGAGCATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAA-CCAT-AAAAGAGCATGCGGGCACTCAG
* * * *
15295704 CCGATCAGAGAGGCAAAATGCGCAAGTCGAGGA-TAGGCCCGGTCCCCACCTACATGCTATCGAT
63 CCGATC-GAGAGGCAAAATGCACAAGCCGAGGATTA-GCCCGGTCCCC-CCTACATGCCACCGAT
* * *
15295768 CCTGCTACCGTAACCCTCAG-TCCGATCCGATCTTAGGCTGGGAATGAACTCCGTA
125 CCTGCTACCGCAACCCTC-GTTCCGATCCGATCTTAGACTAGGAATGAACTCCGTA
15295823 AGCCTAAGTC
Statistics
Matches: 149, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
180 30 0.20
181 3 0.02
182 4 0.03
183 23 0.15
184 33 0.22
185 55 0.37
186 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (180 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACCATAAAAGAGCATGCGGGCACTCAGCCG
ATCGAGAGGCAAAATGCACAAGCCGAGGATTAGCCCGGTCCCCCCTACATGCCACCGATCCTGCT
ACCGCAACCCTCGTTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:15297170 original size:26 final size:26
Alignment explanation
Indices: 15297134--15297186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15297124 CCGGTTTGAT
15297134 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* * *
15297160 CTTAGATTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15297186 C
1 C
15297187 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15298136 original size:684 final size:684
Alignment explanation
Indices: 15296826--15298139 Score: 1777
Period size: 684 Copynumber: 1.9 Consensus size: 684
15296816 GCTTACACAT
* ** * * *
15296826 GGAATGAACTTCGTATGCCTAAGCCAACCTGCGAAACGGGCGTGCGGCGGCTCAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGGCTCAGTCGGTCAGAG
* **
15296891 AGGCATAATGCGCAAGACAGGGATCGACCCGATCCCCCTCTACATGCTGTCAGTCCCACTGCCAC
66 AGGCATAATGCACAAGACAAAGATCGACCCGATCCCCCTCTACATGCTGTCAGTCCCACTGCCAC
* *
15296956 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCATGAAA
131 AACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAA
** * * * * **
15297021 CGGGTGTGTGGGCGCTCAGTCGACTGGAGAGGCAGAATTCGCAAGCTGGGGATCGGCCCGATCTT
196 CGGGTGTGCAGACGCTCAGCCGACTAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCC
* * * * * * * ** *
15297086 CCTTGTGTGCTATCGATCCTGCTGCCGTAACACTCGGTCCGGTTTGATCTTAGACTGGGAATGAA
261 CCCTATGTGCTACCAATCCTGCTACCGCAACACTCAGTCCGGTCCGATCTTAGACTGGAAATGAA
* * *
15297151 CTTCGTATGCTTAGATTGGGGATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAG
326 CTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGTAG
* * *
15297216 GTGCTCGCAGGTCGGAGAGGCCGACCTGAGAGGCATAATGAGCAAGTCGAGGATCAGCCCGGTCC
391 GTGCTCGCAGGCCGGAGAGGCCGACCTGAGAGGCATAATGAGCAAGCCGAAGATCAGCCCGGTCC
* *
15297281 CCCTCTACATGCTGTTGATCCCGCTACCGATCCTACTACCACAACCCTCGGTCTGGCTGGGGCGT
456 CCCACTACATGCTGTTGATCCCGCTACCGATCCTACTACCACAACCCTCGGTCCGGCTGGGGCGT
* * *
15297346 AGACATGGAATTAACTCTGTATGCCTAAGCCAACTCACGAAACAAGCGTGCGGGCGCTCAGCTGG
521 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCTGC
*
15297411 CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTATGTGCTATCAATCTTGCT
586 CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTATGTGCTATCAATCTTGCT
15297476 ACCATAACCCTTGATCCAGTCTGATCTTAGACTG
651 ACCATAACCCTTGATCCAGTCTGATCTTAGACTG
* *
15297510 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG-GCGCTGAGTCGGTCAGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCG-GCTCAGTCGGTCAGA
* * * * * *
15297574 GAGGCATAATGCACAA-ACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTG-CTGGTCCCACTGC
65 GAGGCATAATGCACAAGA-CAAAGATCGACCCGATCCCCCTCTACATGCTGTC-AGTCCCACTGC
*
15297637 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGACA-GAACTCCCTATGCCTAAGCCAACCCAC
128 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGA-ATGAACTCCCTATGCCGAAGCCAACCCAC
* * *
15297701 GAAACGGGTGTGCAGACGCTTAGCCG-GTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTG
192 GAAACGGGTGTGCAGACGCTCAGCCGACT-AGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCG
* * * *
15297765 ATCCCCCCTATTTGCTGCCAATCCTGCTACTGCAACACTCAGTCTGGTCCGATCTTAGACTGGAA
256 ATCCCCCCTATGTGCTACCAATCCTGCTACCGCAACACTCAGTCCGGTCCGATCTTAGACTGGAA
* *
15297830 ATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCA
321 ATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCA
* * * * *
15297895 TTTGGGTGCTCAGTC-GGCCGGAGAGGTCGGCCTGAGAGGCATAATGCGCAAGCCGAAGATCAGC
386 TGTAGGTGCTC-G-CAGGCCGGAGAGGCCGACCTGAGAGGCATAATGAGCAAGCCGAAGATCAGC
* * *
15297959 CCGGTCTCCCACTA-AGTGCTGTTGAT-CCGCTACC-AGTCCTACTGCCACAACCCTTGGTCCGG
449 CCGGTCCCCCACTACA-TGCTGTTGATCCCGCTACCGA-TCCTACTACCACAACCCTCGGTCCGG
* * ** *
15298021 TTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGG
512 CTGGGGCGTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCG
* * *
15298086 CTC-GATCGCCCGGAGAGGCAGAATGCGCAAGCTGGGGATC-AGCCCGGTCCCCCC
577 CTCAGCT-GCCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCC
15298140 CTGCATGCTG
Statistics
Matches: 544, Mismatches: 75, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
683 8 0.01
684 468 0.86
685 67 0.12
686 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (684 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGGCTCAGTCGGTCAGAG
AGGCATAATGCACAAGACAAAGATCGACCCGATCCCCCTCTACATGCTGTCAGTCCCACTGCCAC
AACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAA
CGGGTGTGCAGACGCTCAGCCGACTAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCC
CCCTATGTGCTACCAATCCTGCTACCGCAACACTCAGTCCGGTCCGATCTTAGACTGGAAATGAA
CTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGTAG
GTGCTCGCAGGCCGGAGAGGCCGACCTGAGAGGCATAATGAGCAAGCCGAAGATCAGCCCGGTCC
CCCACTACATGCTGTTGATCCCGCTACCGATCCTACTACCACAACCCTCGGTCCGGCTGGGGCGT
AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCTGC
CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTATGTGCTATCAATCTTGCT
ACCATAACCCTTGATCCAGTCTGATCTTAGACTG
Found at i:15298236 original size:26 final size:26
Alignment explanation
Indices: 15298198--15298250 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15298188 CCAATCCTAT
15298198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15298224 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15298250 C
1 C
15298251 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15298740 original size:26 final size:26
Alignment explanation
Indices: 15298696--15298748 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15298686 CTGGTCCGAT
*
15298696 CTTAGATTGGAAATTAACTCCGTATG
1 CTTAGATTGGAAATGAACTCCGTATG
** *
15298722 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGAAATGAACTCCGTATG
15298748 C
1 C
15298749 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGAAATGAACTCCGTATG
Found at i:15299114 original size:26 final size:26
Alignment explanation
Indices: 15299076--15299128 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15299066 CCAATCCTAT
15299076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15299102 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15299128 C
1 C
15299129 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15299523 original size:159 final size:158
Alignment explanation
Indices: 15299101--15299532 Score: 431
Period size: 159 Copynumber: 2.7 Consensus size: 158
15299091 AACTCCGTAT
* *
15299101 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCAGGA-TCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCA-GACGCTCA
* * * * *
15299165 GCCGGTCGGAGAGGCAGAATGCATAAATTGGGGATCAGCCCAGTCCCCCCTGTGTGCTGTCGATC
65 GCCGGTCAGAGAGGCAGAATGCACAAACTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
** *** ** *
15299230 CTGCTGTTGCAACCCTCAGTCCGTTTTGA
130 CCACTGCCACAACCCTCAGTCCGACTGGA
* * * * * *
15299259 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCA
* * **** * * *
15299323 GTCGGTCAGAGAGGCATAATGCACAAACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTG-CTGG
65 GCCGGTCAGAGAGGCAGAATGCACAAACTGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTC-GA
* * *
15299387 TCCCACTGCCACAACCCTCGGTCTGACTGGG
128 TCCCACTGCCACAACCCTCAGTCCGACTGGA
* * * *
15299418 GCTTAGACATGGACA-GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGACGCTTA
1 GCTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCA
* * *
15299482 GCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCT
65 GCCGGTCAGAGAGGCAGAATGCACAAACTGGGGATCAGCCCGGTCCCCCCT
15299533 ATTTGCTGCC
Statistics
Matches: 215, Mismatches: 53, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 92 0.43
159 119 0.55
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAG
CCGGTCAGAGAGGCAGAATGCACAAACTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
CACTGCCACAACCCTCAGTCCGACTGGA
Found at i:15299621 original size:26 final size:26
Alignment explanation
Indices: 15299577--15299629 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15299567 CTGGTCCGAT
*
15299577 CTTAGATTGGAAATTAACTCCGTATG
1 CTTAGATTGGAAATGAACTCCGTATG
** *
15299603 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGAAATGAACTCCGTATG
15299629 C
1 C
15299630 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGAAATGAACTCCGTATG
Found at i:15300001 original size:26 final size:26
Alignment explanation
Indices: 15299963--15300015 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15299953 CCAATCCTAT
15299963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15299989 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15300015 C
1 C
15300016 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15300501 original size:886 final size:882
Alignment explanation
Indices: 15297497--15300536 Score: 5402
Period size: 878 Copynumber: 3.4 Consensus size: 882
15297487 TGATCCAGTC
15297497 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
15297562 GAGTCGGTCAGAGAGGCATAATGCACAAACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTGCTG
66 GAGTCGGTCAGAGAGGCATAATGCACAAACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTGCTG
15297627 GTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGACAGAACTCCCTATGCCTAAG
131 GTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGACAGAACTCCCTATGCCTAAG
15297692 CCAACCCACGAAACGGGTGTGCAGACGCTTAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGA
196 CCAACCCACGAAACGGGTGTGCAGACGCTTAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGA
* *
15297757 TCGGCCTGATCCCCCCTATTTGCTGCCAATCCTGCTACTGCAACACTCAGTCTGGTCCGATCTTA
261 TCAGCCCGATCCCCCCTATTTGCTGCCAATCCTGCTACTGCAACACTCAGTCTGGTCCGATCTTA
15297822 GACTGGAAATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGA
326 GACTGGAAATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGA
15297887 AACGAGCATTTGGGTGCTCAGTCGGCCGGAGAGGTCGGCCTGAGAGGCATAATGCGCAAGCCGAA
391 AACGAGCATTTGGGTGCTCAGTCGGCCGGAGAGGTCGGCCTGAGAGGCATAATGCGCAAGCCGAA
15297952 GATCAGCCCGGTCTCCCACTAAGTGCTGTTGAT-CCGCTACCAGTCCTACTGCCACAACCCTTGG
456 GATCAGCCCGGTCTCCCACTAAGTGCTGTTGATCCCGCTACCAGTCCTACTGCCACAACCCTTGG
15298016 TCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
521 TCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
15298081 GGGGGCTCGATCGCCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCCTGCAT
586 GGGGGCTCGATCGCCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCCTGCAT
15298146 GCTGCAGATCCTGCTGCTGGTCCTCCTGCCCTAACCCTCGGTCCAATCCTATCTTAGACTGGGAA
651 GCTGCAGATCCTGCTGCTGGTCCTCCTGCCCTAACCCTCGGTCCAATCCTATCTTAGACTGGGAA
15298211 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGC
716 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGC
*
15298276 GTAGGATCTCAGCCGGTC-GAGAGGCAGAATGCATAAATTGGGGATCAGCCCAGT-CCCCCTGTG
781 GCAGGATCTCAGCCGGTCGGAGAGGCAGAATGCATAAATTGGGGATCAGCCCAGTCCCCCCTGTG
15298339 TGCTGTCGATCCTGCTGTTGCAACCCTCAGTCCG-TT
846 TGCTGTCGATCCTGCTGTTGCAACCCTCAGTCCGTTT
15298375 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
15298440 GAGTCGGTCAGAGAGGCATAATGCACAAACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTGCTG
66 GAGTCGGTCAGAGAGGCATAATGCACAAACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTGCTG
15298505 GTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGACAGAAACT-CCTATGCCTAA
131 GTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGACAG-AACTCCCTATGCCTAA
*
15298569 GCCAACCCACGAAACGGGTGTGCAGACGCTTAGTCGGTCAGAGAGGCAGAATGCGCAAGCTGGGG
195 GCCAACCCACGAAACGGGTGTGCAGACGCTTAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGG
15298634 ATCAGCCCGATCCCCCCTATTTGCTGCCAATCCTGCTACTGCAACACTCAGTCTGGTCCGATCTT
260 ATCAGCCCGATCCCCCCTATTTGCTGCCAATCCTGCTACTGCAACACTCAGTCTGGTCCGATCTT
*
15298699 AGATTGGAAATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATG
325 AGACTGGAAATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATG
15298764 AAACGAGCATTTGGGTGCTCAGTCGGCCGGAGAGGTCGGCCTGAGAGGCATAATGCGCAAGCCGA
390 AAACGAGCATTTGGGTGCTCAGTCGGCCGGAGAGGTCGGCCTGAGAGGCATAATGCGCAAGCCGA
15298829 AGATCAGCCCGGTCTCCCACTAAGTGCTGTTGATCCCGCTACCAGTCCTACTGCCACAACCCTTG
455 AGATCAGCCCGGTCTCCCACTAAGTGCTGTTGATCCCGCTACCAGTCCTACTGCCACAACCCTTG
15298894 GTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTG
520 GTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTG
15298959 CGGGGGCTCGATCGCCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGT-CCCCCCTGCA
585 CGGGGGCTCGATCGCCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCCTGCA
15299023 TGCTGCAGATCCTGCTGCTGGTCCTCCTGCCCTAACCCTCGGTCCAATCCTATCTTAGACTGGGA
650 TGCTGCAGATCCTGCTGCTGGTCCTCCTGCCCTAACCCTCGGTCCAATCCTATCTTAGACTGGGA
15299088 ATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
715 ATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
15299153 CGCAGGATCTCAGCCGGTCGGAGAGGCAGAATGCATAAATTGGGGATCAGCCCAGTCCCCCCTGT
780 CGCAGGATCTCAGCCGGTCGGAGAGGCAGAATGCATAAATTGGGGATCAGCCCAGTCCCCCCTGT
15299218 GTGCTGTCGATCCTGCTGTTGCAACCCTCAGTCCGTTT
845 GTGCTGTCGATCCTGCTGTTGCAACCCTCAGTCCGTTT
15299256 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
15299321 GAGTCGGTCAGAGAGGCATAATGCACAAACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTGCTG
66 GAGTCGGTCAGAGAGGCATAATGCACAAACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTGCTG
15299386 GTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGACAGAACTCCCTATGCCTAAG
131 GTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGACAGAACTCCCTATGCCTAAG
15299451 CCAACCCACGAAACGGGTGTGCAGACGCTTAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGA
196 CCAACCCACGAAACGGGTGTGCAGACGCTTAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGA
*
15299516 TCAGCCCGATCCCCCCTATTTGCTGCCAATCCTGCTGCTGCAACACTCAGTCTGGTCCGATCTTA
261 TCAGCCCGATCCCCCCTATTTGCTGCCAATCCTGCTACTGCAACACTCAGTCTGGTCCGATCTTA
* *
15299581 GATTGGAAATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCAATGA
326 GACTGGAAATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGA
15299646 AACGAGCAATTTGGGTGCTCAGTCGGCCGGAGAGGTCGGCCTGAGAGGCATAATGGCGCAAGCCG
391 AACGAGC-ATTTGGGTGCTCAGTCGGCCGGAGAGGTCGGCCTGAGAGGCATAAT-GCGCAAGCCG
15299711 AAGATCAGCCCGGTCTCCCCACTAAGTGCTGTTGATCCCGCTACCAAGTCCCTACTGCCACAACC
454 AAGATCAGCCCGGTCT-CCCACTAAGTGCTGTTGATCCCGCTACC-AGT-CCTACTGCCACAACC
15299776 CTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAG
516 CTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAG
* *
15299841 CGTGCGGGGGCTCGATCACCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCC
581 CGTGCGGGGGCTCGATCGCCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCC
* *
15299906 TACATGCTGCAGATCCTGCTGCTGGTCTTCCTGCCCTAACCCTCGGTCCAATCCTATCTTAGACT
646 TGCATGCTGCAGATCCTGCTGCTGGTCCTCCTGCCCTAACCCTCGGTCCAATCCTATCTTAGACT
15299971 GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
711 GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
*
15300036 AGCACGCAGGATCTCAGCCGGTCGGAGAGGCAGAATGCATAAATTGGGGATCAGCCCAGTCCCCC
776 AGCGCGCAGGATCTCAGCCGGTCGGAGAGGCAGAATGCATAAATTGGGGATCAGCCCAGTCCCCC
15300101 CTGTGTGCTGTCGATCCTGCTGTTGCAACCCTCAGTCCGTTT
841 CTGTGTGCTGTCGATCCTGCTGTTGCAACCCTCAGTCCGTTT
15300143 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
* *** * * * * *
15300208 GA-ACCAACCGAGAGGCATAATGCGCAAACC-AGGTATCGGCCCGGTCCCCCTCTACGTGCTGCT
66 GAGTCGGTCAGAGAGGCATAATGCACAAACCAAAG-ATCGGCCCGGTCCCCCTTTGCGTGCTGCT
* * ** **
15300271 GGTCCCGCTGCCACAGCCCTTAGTCTGACTGGGGCTTAGACATGGATTGAACTCCCTATGCCTAA
130 GGTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGACAGAACTCCCTATGCCTAA
* * * * * * * *
15300336 GCCAACCCATGAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAG-TCGGG
195 GCCAACCCACGAAACGGGTGTGCAGACGCTTAGCCGGTCAGAGAGGCAGAATGCGCAAGCT-GGG
** ** * * * * * * * * *
15300400 GATTGGCCCGATCCCCCCTGCA-TT-CTATCGATCCTACTGCCGTAAC-CTTCGGTCCGATCCAA
259 GATCAGCCCGATCCCCCCT--ATTTGCTGCCAATCCTGCTACTGCAACAC-TCAGTCTGGTCCGA
* * * * *
15300462 TCTTAGACTGGGAGTGAACTCCATATGTTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACC
321 TCTTAGACTGGAAATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACC
*
15300527 CACGAAACGA
386 CATGAAACGA
15300537 CCGTGCGTGC
Statistics
Matches: 2089, Mismatches: 56, Indels: 26
0.96 0.03 0.01
Matches are distributed among these distances:
878 637 0.30
879 189 0.09
880 47 0.02
881 391 0.19
882 46 0.02
883 26 0.01
884 28 0.01
885 7 0.00
886 408 0.20
887 309 0.15
888 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (882 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT
GAGTCGGTCAGAGAGGCATAATGCACAAACCAAAGATCGGCCCGGTCCCCCTTTGCGTGCTGCTG
GTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGACAGAACTCCCTATGCCTAAG
CCAACCCACGAAACGGGTGTGCAGACGCTTAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGA
TCAGCCCGATCCCCCCTATTTGCTGCCAATCCTGCTACTGCAACACTCAGTCTGGTCCGATCTTA
GACTGGAAATTAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGA
AACGAGCATTTGGGTGCTCAGTCGGCCGGAGAGGTCGGCCTGAGAGGCATAATGCGCAAGCCGAA
GATCAGCCCGGTCTCCCACTAAGTGCTGTTGATCCCGCTACCAGTCCTACTGCCACAACCCTTGG
TCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
GGGGGCTCGATCGCCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCCTGCAT
GCTGCAGATCCTGCTGCTGGTCCTCCTGCCCTAACCCTCGGTCCAATCCTATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGC
GCAGGATCTCAGCCGGTCGGAGAGGCAGAATGCATAAATTGGGGATCAGCCCAGTCCCCCCTGTG
TGCTGTCGATCCTGCTGTTGCAACCCTCAGTCCGTTT
Found at i:15302230 original size:26 final size:26
Alignment explanation
Indices: 15302201--15302253 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15302191 CCAGTCCGAT
15302201 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15302227 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
15302253 C
1 C
15302254 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15302561 original size:26 final size:26
Alignment explanation
Indices: 15302543--15302608 Score: 123
Period size: 26 Copynumber: 2.5 Consensus size: 26
15302533 TAGACTGGGA
15302543 ATGAACTCCGTATGGTTAGATTGGAG
1 ATGAACTCCGTATGGTTAGATTGGAG
*
15302569 ATGAACTCCATATGGTTAGATTGGAG
1 ATGAACTCCGTATGGTTAGATTGGAG
15302595 ATGAACTCCGTATG
1 ATGAACTCCGTATG
15302609 CCTAAGTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (26 bp):
ATGAACTCCGTATGGTTAGATTGGAG
Found at i:15302995 original size:26 final size:26
Alignment explanation
Indices: 15302958--15303008 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15302948 AGTCTGATCT
15302958 TAGACTAGGAATGAACTTCATATGCG
1 TAGACTAGGAATGAACTTCATATGCG
*
15302984 TAGACT-GTGAATGAACTTCGTATGC
1 TAGACTAG-GAATGAACTTCATATGC
15303009 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TAGACTAGGAATGAACTTCATATGCG
Found at i:15303313 original size:159 final size:159
Alignment explanation
Indices: 15303139--15303744 Score: 747
Period size: 159 Copynumber: 3.8 Consensus size: 159
15303129 CCGGTCTGAT
*
15303139 CTTAGAC-TGGGAATGAACTTCGTACGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTACGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAG
*
15303203 CCGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCAGTCCCCCTCTGCGTGCTATCGATC
65 CCGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCAGTCCCCCTCTGCATGCTATCGATC
15303268 CCACTGCCACAACCCTCAGTCTGGCTGGGG
130 CCACTGCCACAACCCTCAGTCTGGCTGGGG
*
15303298 CTTAGACATGGAATGAACTTCGTACGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCGTACGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGC
* *
15303363 CGATCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCAGTCCCCCTCTGCGTGCTATCGATCC
66 CGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCAGTCCCCCTCTGCATGCTATCGATCC
15303428 CACTGCCACAACCCTCAGTCTGGCTGGGG
131 CACTGCCACAACCCTCAGTCTGGCTGGGG
* * * * ** * *
15303457 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-AAAACAGGTGTACGGGCACTGAT
1 CTTAGACATGGAATGAACTCCGTACGCATAAGTCAACCCACGAAATGA-GCGTACGGGCACTGAG
* * * * * * ** * * ** *
15303521 CCGGCCGAAGAGGCATAATGTGTAAGTCGGGGA-CCAGCTGGATCCCCCTATGCATGTTGCCGGT
65 CCGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCAG-TCCCCCTCTGCATGCTATCGAT
* *
15303585 CCCACTGCCACAACCCTCGGCCTGGCTGGGG
129 CCCACTGCCACAACCCTCAGTCTGGCTGGGG
* * * * * * * * *
15303616 CTTAGACATGGAATAAACTCCGTATGCCTAAGTCGACCCATGAAATGGGTGTGCGGGCA-AGAGG
1 CTTAGACATGGAATGAACTCCGTACGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGA-G
* * * * *
15303680 CCGACCGAAGAGGCAGAATGCGAAAG-CCAGGGATCGGCCCAGTCCCCC-CTGCATGCTGTCGAT
65 CCGACCGAAGAGGCATAATGCGCAAGTCGA-GGATCGACCCAGTCCCCCTCTGCATGCTATCGAT
15303743 CC
129 CC
15303745 TGATGCTGGT
Statistics
Matches: 387, Mismatches: 53, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
158 24 0.06
159 356 0.92
160 7 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTACGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGC
CGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCAGTCCCCCTCTGCATGCTATCGATCC
CACTGCCACAACCCTCAGTCTGGCTGGGG
Found at i:15304159 original size:159 final size:158
Alignment explanation
Indices: 15303811--15304313 Score: 550
Period size: 158 Copynumber: 3.2 Consensus size: 158
15303801 AACTCTGTAT
* *
15303811 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGACGCTCAG
* ** * * **
15303876 CTGGCCGGAGAGATAGAATGCGCAAGTTGGGGA-CTGGCCCGATCCCCCCTGCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GGCCCGGTCCCCCCTGCGTGCTACCGATC
* **
15303940 CTGCTGTCGCAACCCTCGGTCCGGTCCGA
130 CTGCTGCCGCAACCCTCAATCCGGTCCGA
* * * * * * *
15303969 TCTTATAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCAGACGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGACGCTCA
* * * * **
15304033 GCCGGCCGAAGAGGGATAATGCGCAAGCCGGGGATCGATCCGGTCCCCCTCTGCGTGCTACCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTACCGAT
* * *
15304098 -CTCGCTGCCACAACCCTCAATCCGG-CTGGG
129 CCT-GCTGCCGCAACCCTCAATCCGGTC-CGA
* *
15304128 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTAT-GGACGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-TCGGACGCTCA
* * * *
15304192 GTCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTACCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATC
* * * *
15304257 CTGCTGCCGCAACCCTTAGTCCAGTCCAA
130 CTGCTGCCGCAACCCTCAATCCGGTCCGA
*
15304286 TCTTAGAC-TGGAAATGAACTCCGTATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
15304314 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 55, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 147 0.52
159 127 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGACGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
TGCTGCCGCAACCCTCAATCCGGTCCGA
Found at i:15304694 original size:26 final size:26
Alignment explanation
Indices: 15304665--15304717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15304655 CCTGTCCGAT
15304665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15304691 CTTAGTCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15304717 C
1 C
15304718 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15305781 original size:159 final size:158
Alignment explanation
Indices: 15305398--15305895 Score: 384
Period size: 158 Copynumber: 3.1 Consensus size: 158
15305388 ACTCCGTATG
* * * *
15305398 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCTCAGC
* * * * * * * *
15305463 AGACCGGAGAGGCAAAATGCGTAAGTCGGGGACTGACTCGGTCCCCCTTGTGTGCTGTCGATCCT
66 CGACAGAAGAGGCAAAATGCGCAAGCCAGGGACTAACTCGGTCCCCCTTGTGTGCTATCGATCCT
** *
15305528 GCTACCGTAACCCTCGATCCAGTCCAAT
131 GCTACCACAACCCTCGATCCAGTCCAAC
* ** * * * * *
15305556 CTTAGAC-TGGGAATGAAGTCCGTATGCCTAAGTTAACTCAAGAAATGAGCGTTCGGATGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCTCAG
* * * *
15305620 CCGACAGAAGAGGGATAATGCGCAAGCCAGGGA-TCAACTCGGTCCCCTTCTGTGTGCTATCGGT
65 CCGACAGAAGAGGCAAAATGCGCAAGCCAGGGACT-AACTCGGTCCCCCT-TGTGTGCTATCGAT
* ** * ***
15305684 -CTCGCTGCCACAACCCTCGAT-TTGGCTGGGC
128 CCT-GCTACCACAACCCTCGATCCAGTC-CAAC
* * * *
15305715 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCTCAGC
* * * * ** * *
15305780 CGGTC-GGAGAGGCAGAATGCGCAAG-CTGAGGA-TCGGCCCGGTCCCCCTTGTGTGCTACCGAT
66 C-GACAGAAGAGGCAAAATGCGCAAGCCAG-GGACT-AACTCGGTCCCCCTTGTGTGCTATCGAT
** * * *
15305842 CCTGCTGTCGCAACCCTCGGTCC-GATCCAAT
128 CCTGCTACCACAACCCTCGATCCAG-TCCAAC
15305873 CTTAGAC-TGGGAATGAACTCCGT
1 CTTAGACAT-GGAATGAACTCCGT
15305896 GCGCTTAGAC
Statistics
Matches: 262, Mismatches: 66, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 142 0.54
159 114 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCTCAGC
CGACAGAAGAGGCAAAATGCGCAAGCCAGGGACTAACTCGGTCCCCCTTGTGTGCTATCGATCCT
GCTACCACAACCCTCGATCCAGTCCAAC
Found at i:15306455 original size:197 final size:196
Alignment explanation
Indices: 15306083--15306465 Score: 432
Period size: 197 Copynumber: 1.9 Consensus size: 196
15306073 TGGACATGAA
* * **
15306083 ATGAACTCCGTACGCCTAGGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCAGCCGGAGGGG
1 ATGAACTCCGTACGCCTAGGTCAACCAACAAAACGAGCGTACGGGCACTCAGCCAGCCGGAGACG
* * * * * *
15306148 CAGAATGCGCAAGCCGGGGATCGGCCTGGTCTTCCCCTACGTGCTGTCGATCCTGCTACCGATCT
66 CAGAATGCCCAAGCCAGGGATCAGCCTGATC-TCCCCTACGTGCTGTCGATCCCGCTACCGACCT
* * * * * * *
15306213 TGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGATTGAGAATGAACTCTGTATGCTTAGACTGG
130 GGCTACCACAACCCTCAGTCCGCTCCGAGCTTACAATGAGAATGAACTCCGTATGCTTAGACTGG
15306278 GG
195 GG
* * * **
15306280 ATGAATTCCGTATGCCTATGTCAACCAACAAAACGAGCGTACGGGTGCTCAGCCAGCCGGAGACG
1 ATGAACTCCGTACGCCTAGGTCAACCAACAAAACGAGCGTACGGGCACTCAGCCAGCCGGAGACG
* * * *
15306345 CATAATGCCCAAGCCAGGGATCAGCCTGATC-CCCTTCTACGTGCTGTTGATCCCGCTGCCGGCC
66 CAGAATGCCCAAGCCAGGGATCAGCCTGATCTCCC--CTACGTGCTGTCGATCCCGCTACC-GAC
* *
15306409 CTGGC-ACCACAACCCTCAGTCCAGCT-GGGGCTTACACATG-GAATGAACTCCGTATGC
128 CTGGCTACCACAACCCTCAGTCC-GCTCCGAGCTTACA-ATGAGAATGAACTCCGTATGC
15306466 CTAAGCCAAC
Statistics
Matches: 153, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
195 3 0.02
197 141 0.92
198 9 0.06
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (196 bp):
ATGAACTCCGTACGCCTAGGTCAACCAACAAAACGAGCGTACGGGCACTCAGCCAGCCGGAGACG
CAGAATGCCCAAGCCAGGGATCAGCCTGATCTCCCCTACGTGCTGTCGATCCCGCTACCGACCTG
GCTACCACAACCCTCAGTCCGCTCCGAGCTTACAATGAGAATGAACTCCGTATGCTTAGACTGGG
G
Found at i:15306707 original size:159 final size:157
Alignment explanation
Indices: 15306439--15306781 Score: 434
Period size: 159 Copynumber: 2.2 Consensus size: 157
15306429 CCAGCTGGGG
* * *
15306439 CTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTGCGGGCACTCAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAGC
* * * * * * *
15306504 CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGACCAGCCCAGTCCCCTCCTGCTTGTTGTCGATCT
66 CAGCCGGAGAGGCAGAATGAGCAAGCCCGGGACCAGCACAGT-CCC-CCTGCATGCTGTCGATCT
* *
15306569 TGCTGTCACAACCCTCGGTCTGATCCGAT
129 TGCTGCCACAACCCTCGGTCCGATCCGAT
** * * * *
15306598 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAGC
* * * *
15306663 CAGCCGGAGAGGCAGAATGAGCAAGCCCGGGATCGGTACGGTCCCCCTGCATGCTGTCGATCTTG
66 CAGCCGGAGAGGCAGAATGAGCAAGCCCGGGACCAGCACAGTCCCCCTGCATGCTGTCGATCTTG
* * *
15306728 CTGCCGCAACCCTTGGTCCGATTCGAT
131 CTGCCACAACCCTCGGTCCGATCCGAT
*
15306755 CTTAGGCAAGGAATGAACTCCGTATGC
1 CTTAGACAAGGAATGAACTCCGTATGC
15306782 TTAGACTGGG
Statistics
Matches: 157, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
157 64 0.41
158 3 0.02
159 90 0.57
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAGC
CAGCCGGAGAGGCAGAATGAGCAAGCCCGGGACCAGCACAGTCCCCCTGCATGCTGTCGATCTTG
CTGCCACAACCCTCGGTCCGATCCGAT
Found at i:15306784 original size:26 final size:26
Alignment explanation
Indices: 15306755--15306807 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15306745 CCGATTCGAT
*
15306755 CTTAGGCAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
** *
15306781 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15306807 C
1 C
15306808 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:15306978 original size:26 final size:26
Alignment explanation
Indices: 15306949--15307001 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15306939 CCGGTCTGAT
15306949 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15306975 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15307001 C
1 C
15307002 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15307389 original size:159 final size:158
Alignment explanation
Indices: 15306976--15307583 Score: 438
Period size: 170 Copynumber: 3.8 Consensus size: 158
15306966 CTCCGTATGC
** *
15306976 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC
* * ** * * ** ** * *
15307041 GACCGGAGAGGCAAAATGCGTAAGCCAGGGACCGACTCGAT-CCCCCCTGTGTGCTATCGATCTT
66 GACCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCTGCCGGTCCT
**** * ** *
15307105 GCTGTGGCAACCCTTGGTCCGGTCTGAT
131 GCTACCACAACCCTCGGTCCGGTGGGGT
* * * * * *
15307133 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGAG
1 -TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** *** * * **
15307197 TGGGTCGAAGAGGCATAATGCACAAGTTGGGGATCGACTCGGTCCCCTTCTACGTGCTGCCGGTC
64 TCGACCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCTGCCGGTC
*
15307262 CCGCTACCACAACCCTCGGTCCGGATGGGGT
129 CTGCTACCACAACCCTCGGTCCGG-TGGGGT
* * *
15307293 TTAGACATGGAATGAACTCGC-TATGCCTGAGCCAACCCACT-AAACGGGCGTGCGGGCACTCAG
1 TTAGACATGGAATGAACTC-CATATGCCTAAGCCAACCCA-TGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15307356 -CTGACCGGAGAGGCATAATGCATAAGCCAGGGATC-AGCCCGGTCCCCCTCTGCATGTGTCGAT
64 TC-GACCGAAGAGGCATAATGCACAAGCCAGGGATCGA-CCCGATCCCCCCCT--ACGTG-C--T
* * *
15307419 CCCGCTACTGGTCCTGCTACCATAACCCTCGGTCTGGCTGGGGC
122 ---GC--C-GGTCCTGCTACCACAACCCTCGGTCCGG-TGGGGT
* * * * * *
15307463 TTAGACATGGAATGAACTCCGTATGCCAAATCCAACACATGAAATGAGCGTGCGGGCGCTCA-AC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC
* * * *
15307527 TGGCCGAAAAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCT
66 -GACCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCT
15307584 AGTCCTGCTG
Statistics
Matches: 348, Mismatches: 79, Indels: 39
0.75 0.17 0.08
Matches are distributed among these distances:
157 1 0.00
158 84 0.24
159 118 0.34
160 5 0.01
161 4 0.01
162 1 0.00
164 1 0.00
165 1 0.00
167 3 0.01
168 4 0.01
169 3 0.01
170 122 0.35
171 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC
GACCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCTGCCGGTCCT
GCTACCACAACCCTCGGTCCGGTGGGGT
Found at i:15309218 original size:26 final size:25
Alignment explanation
Indices: 15309170--15309221 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
15309160 CCGATCCGAT
**
15309170 CTTAGACTGGGAATGACTTCGTATG
1 CTTAGACTGGGAATGACACCGTATG
*
15309195 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATG-ACACCGTATG
15309221 C
1 C
15309222 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGACACCGTATG
Found at i:15309935 original size:26 final size:26
Alignment explanation
Indices: 15309884--15309936 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15309874 GGCTCAAAAT
*
15309884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15309910 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15309936 C
1 C
15309937 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15310211 original size:159 final size:158
Alignment explanation
Indices: 15309910--15310412 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 158
15309900 ACTCCGTATG
* * * * * * *
15309910 CTTAGACAT-GGAATGAACTTCATATGCCTAGGCCAACCCACGAAA-CGAGCATGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATCG-GCGTCCGGGCACTCA
* * ** * ** * * * * *
15309973 GCCGGTCGGGGAGGCAGAACGCGTAAGCCAGGGACCGACC-CAGTCCCGCACTACGTGCTGTCGA
64 GCCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCG-CCTCGGTCCC-CCCTGCGTGCTGTCGA
* * *
15310037 TCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
127 TCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
* ** * *
15310069 CTTAGACTGGGACTGAACTCCGTATGCATAAGTTAACCCACGAAA-CGAGCGTCCGGGCATTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATCG-GCGTCCGGGCACTCAG
** * * ** *
15310133 CTGGCCGAAGAGGCATAATGCGCAAGTTGGGGATCGACCT-GGTCCCTCTCTGCGTGCTGTC-AG
65 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCG-CCTCGGTCCC-CCCTGCGTGCTGTCGA-
* **
15310196 TCCCGCTGCCACAACCCTCGGTCCGG-CTGGGG
127 TCCTGCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * * * **
15310228 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAATTGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATCGGCGTCCGGGCACTCAG
* * * *
15310292 CCAGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGGCGATCC
65 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGCCTCGGTCCCCCCTGCGTGCTGTCGATCC
* *
15310357 TGCTGCCCCAACCCTCGGTCCGATCTGAT
130 TGCTGCCACAACCCTCGGTCCGGTCTGAT
15310386 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15310413 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 62, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 66 0.24
159 203 0.75
160 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATCGGCGTCCGGGCACTCAGC
CAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGCCTCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:15310415 original size:26 final size:26
Alignment explanation
Indices: 15310386--15310436 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15310376 CCGATCTGAT
15310386 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15310412 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15310437 AACTATGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15310852 original size:159 final size:158
Alignment explanation
Indices: 15310596--15310882 Score: 353
Period size: 159 Copynumber: 1.8 Consensus size: 158
15310586 CGACTGGGGC
* ** * * * *
15310596 TTAGGCATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGTGCGTACGGCCACTCAGTC
1 TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTACGGCCACTCAGAC
* * *
15310661 GATCGGAGAGGCATAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGATCCC
66 GACCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCC-CTGCGTGCTACCGATCCC
15310726 ATTGCCAGAACCATCGGTCTGGCTAGTGA
130 ATTGCCAGAACCATCGGTCTGGCTAGTGA
* *
15310755 TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCA-AC
1 TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTACGGCCACTCAGAC
* * * * * * **
15310819 GGGCCGGAGGGGTAGAATGCGTAAGCC-AGGGATCGTCCTGGTCCCCCCTGCGTGCTACCGATCC
66 -GACCGGAGAGGCAGAATACGCAAGCCGA-GGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
15310883 TGCTGCCGCA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
158 18 0.17
159 88 0.83
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTACGGCCACTCAGAC
GACCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCCCA
TTGCCAGAACCATCGGTCTGGCTAGTGA
Found at i:15311673 original size:26 final size:26
Alignment explanation
Indices: 15311622--15311674 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15311612 GGCTCAAAAT
*
15311622 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15311648 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15311674 C
1 C
15311675 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15312099 original size:157 final size:155
Alignment explanation
Indices: 15311647--15312147 Score: 444
Period size: 159 Copynumber: 3.2 Consensus size: 155
15311637 AACTCCGTAT
* * * *
15311647 GCTTAGACAT-GGAATGAACTTCATATGCCTAGGCCAACCCACGAAACGAGCATGCGG-GCGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAGCATGCGGCGTGCTC
* * * * * * *
15311710 AGCCGGTCGGGGAGGCAGAACGCGTAAGCCAGGGATCGACCCAGTCCCGCACTACGTGCTGTCGA
64 AGCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGA-CCGGTCCC-CCCTGCGTGCTGTCGA
*
15311775 TCCTGCTACCGCAACCCTCAGTCCGGTCTGA
127 TCCTGCTGCC-CAACCCTCAGTCCGG-CTGA
* * ** * * * *
15311806 TCTTAGACTGGGACTGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTCCGGGCAT--TG
1 GCTTAGACTGGGAATGAACTCCGTATGC-TAAGCCAACCCACGAAACGAGCATGC-GGCGTGCTC
* * * * **
15311869 AGCTGGCCGAAGAGGCATAATGCGCAAGTTGGGGATCGACCTGGTCCCCCTCTGCGTGCTGTC-A
64 AGCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACC-GGTCCCCC-CTGCGTGCTGTCGA
* *
15311933 GTCC-ACTGCCACAACCCTC-GTCCGGCTGGG
127 -TCCTGCTGCC-CAACCCTCAGTCCGGCT-GA
* * *
15311963 GCTTAGACAT-GGAATGAACTCCCTATGCTAAGCCAGCCCACGAAATTG-GCATGCGGCGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCTAAGCCAACCCACGAAA-CGAGCATGCGGCGTGCTC
* * * *
15312026 AGCCAGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGGCGAT
64 AGCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC-CGGTCCCCCCTGCGTGCTGTCGAT
* **
15312091 CCTGCTGCCCAACCCTCGGTCCGATTGA
128 CCTGCTGCCCAACCCTCAGTCCGGCTGA
*
15312119 TCTTAGACTGGGAATGAACTCCGTATGCT
1 GCTTAGACTGGGAATGAACTCCGTATGCT
15312148 TAGACTGGGG
Statistics
Matches: 269, Mismatches: 56, Indels: 37
0.74 0.15 0.10
Matches are distributed among these distances:
155 5 0.02
156 68 0.25
157 83 0.31
158 20 0.07
159 91 0.34
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (155 bp):
GCTTAGACTGGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCATGCGGCGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCCAACCCTCAGTCCGGCTGA
Found at i:15312149 original size:26 final size:26
Alignment explanation
Indices: 15312120--15312170 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15312110 TCCGATTGAT
15312120 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15312146 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15312171 AACTATGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15313170 original size:26 final size:26
Alignment explanation
Indices: 15313141--15313193 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15313131 TCGGTCCGAT
*
15313141 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
15313167 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
15313193 C
1 C
15313194 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:15313673 original size:26 final size:26
Alignment explanation
Indices: 15313644--15313696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15313634 CCGGTCTGAT
15313644 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15313670 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15313696 C
1 C
15313697 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15314757 original size:159 final size:158
Alignment explanation
Indices: 15314402--15314904 Score: 491
Period size: 158 Copynumber: 3.2 Consensus size: 158
15314392 AACTCCATAT
* * * *
15314402 GCTTAGGCATGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGCGCGGGCGCTCAC
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * **
15314467 CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGTCGGTCCCCCCCTGCGTGCCATCGATCC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGAGATCGCCCGGTCCCCCCCTGCGTGCCATCGATCC
* * * *
15314532 TACTACGATAACCCTCTGTCCGGTCTGA
131 CACTACCACAACCCTCAGTCCGGTCTGA
* * * * * *
15314560 TCTTAGAC-TAAGAATGAACTCCGTACGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** *
15314624 GCTGATCGAAGAGGCATAATGCACAAGCCGGAGATCAGCCCGGTCCCCTTCTGCGTGCTATC-AG
65 GCCGATCGGAGAGGCAGAATGCACAAGCCGGAGATC-GCCCGGTCCCCCCCTGCGTGCCATCGA-
* * *
15314688 TCCCACTGCCACAACCCTCAGTCTGG-CTGGG
128 TCCCACTACCACAACCCTCAGTCCGGTCT-GA
* * *
15314719 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
15314784 CCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGAT-CCCCCCTGCCTGTTGCCA---
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGAGATCG-CCCGGTCCCCCCCTG-C-G-TGCCATCG
* * * *
15314845 ATCCTACTATCGCAACCCTCAATCCGGTCTGA
127 ATCCCACTACCACAACCCTCAGTCCGGTCTGA
*
15314877 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15314905 TTAGATTGGG
Statistics
Matches: 276, Mismatches: 58, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 136 0.49
159 132 0.48
160 2 0.01
161 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCACAAGCCGGAGATCGCCCGGTCCCCCCCTGCGTGCCATCGATCC
CACTACCACAACCCTCAGTCCGGTCTGA
Found at i:15314907 original size:26 final size:26
Alignment explanation
Indices: 15314878--15314930 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15314868 CCGGTCTGAT
15314878 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15314904 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15314930 C
1 C
15314931 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15315697 original size:159 final size:157
Alignment explanation
Indices: 15315283--15315699 Score: 374
Period size: 159 Copynumber: 2.6 Consensus size: 157
15315273 AACTCCATAT
** * * * * *
15315283 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAACCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
15315348 CCGGTCGGAGAGGCAGAATTGCCAAGTTGGGGATCGGCTCGGTCGTCCCTACGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAA-TGCCAAGTAGGGGATCAGCCCGGTCGCCCCTACGTGCTGTCGATCC
* * * ** *
15315413 TGTTGCTGCAACCCTCGGTCCGGTCCGA
130 CGCTACCACAACCCTCGGTCCGGTCAGA
* * * * * * *
15315441 TCTTAGACTAT-GAATGAACTCCATATGCCTAAGTCAACCCACCAAACGAGCATGTGGGCATTGA
1 GCTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * ** ** * * *
15315505 GCTGGTCGGAGAGGCATAACGGATAAGCCGGGGATTAGCCCGGTC-CCCTTCTGCGTGTTGTCGA
65 GCCGGTCGGAGAGGCAGAA-TGCCAAGTAGGGGATCAGCCCGGTCGCCC--CTACGTGCTGTCGA
* *
15315569 TCCCGCTACCACAACTCTCGGTCCGG-CTAGG
127 TCCCGCTACCACAACCCTCGGTCCGGTC-AGA
* * *
15315600 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
15315665 CC-GACTGGAGAGGCAGAATGCCCAAGTAGGGGATC
66 CCGGTC-GGAGAGGCAGAATG-CCAAGTAGGGGATC
15315700 GGCCTGGCCC
Statistics
Matches: 197, Mismatches: 55, Indels: 13
0.74 0.21 0.05
Matches are distributed among these distances:
157 2 0.01
158 87 0.44
159 108 0.55
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCCAAGTAGGGGATCAGCCCGGTCGCCCCTACGTGCTGTCGATCCC
GCTACCACAACCCTCGGTCCGGTCAGA
Found at i:15315800 original size:26 final size:26
Alignment explanation
Indices: 15315759--15315811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15315749 CCGGTCTGAT
15315759 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
** *
15315785 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
15315811 C
1 C
15315812 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:15317598 original size:26 final size:26
Alignment explanation
Indices: 15317560--15317612 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15317550 CCAATCCAAT
*
15317560 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15317586 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15317612 C
1 C
15317613 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15317712 original size:197 final size:197
Alignment explanation
Indices: 15317362--15317721 Score: 499
Period size: 197 Copynumber: 1.8 Consensus size: 197
15317352 GTGGCTGAAC
* ** *
15317362 TCTTAGATTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCTAACC
1 TCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
15317427 CACGAAATGAGCGTGCAGGCGTTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCATCC
66 CACGAAACGAGCATGCAGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCC
*
15317492 AAGTCCCCCCTTGCATGCTGTCGATCCTGCTACTGGTCCTGCTACTGCAACCCTCGGTCCAATCC
131 AAGTCCCCCCTTGCATGCTGTCGATCCCGCTACTGGTCCTGCTACTGCAACCCTCGGTCCAATCC
15317557 AA
196 AA
* *
15317559 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
15317624 CATGAAACGAGCATGCGGGTGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCTAGGGATCGGCC
66 CACGAAACGAGCATGCAGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCC
** *
15317689 CGGT-CCCCCTT-TATGTCCTGTCGATCCCGCTAC
131 AAGTCCCCCCTTGCATG--CTGTCGATCCCGCTAC
15317722 CACAACCCTC
Statistics
Matches: 140, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 3 0.02
196 7 0.05
197 130 0.93
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (197 bp):
TCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCATGCAGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCC
AAGTCCCCCCTTGCATGCTGTCGATCCCGCTACTGGTCCTGCTACTGCAACCCTCGGTCCAATCC
AA
Found at i:15318663 original size:26 final size:26
Alignment explanation
Indices: 15318625--15318677 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15318615 GGCTCAAACT
15318625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15318651 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15318677 C
1 C
15318678 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15319312 original size:159 final size:158
Alignment explanation
Indices: 15319026--15319513 Score: 373
Period size: 159 Copynumber: 3.1 Consensus size: 158
15319016 TGCTTAGAAA
* * * *
15319026 TGGGATGAATTCCGTATGCCTAAGCTAACCCATGAAACGAACGTGCAGGCACTCAGCTGGCCGGA
1 TGGGATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAACGTACAGGCACTCAGCCGACCGGA
* * *
15319091 GAGGTAGAATGCGCAAGCTGAGGATCGACCCGATCCACCCCTGCGTGCTGTCGATCCTGCTACCA
66 GAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCACCCCTGCGTCCTGTCGATCCCGCTACCA
15319156 CAACCCTCAGTCCTGTCCGATCTTAGAC
131 CAACCCTCAGTCCTGTCCGATCTTAGAC
* * ** * *
15319184 TGGGAATGAACTCCGTATGCCTAAG-TCAACCCATGAAATGAGCGTACAGGCGTTGAGCCGATCG
1 TGGG-ATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAACGTACAGGCACTCAGCCGACCG
* * * ** *
15319248 GAGAGGCATAATGCGCAAGCT-AGGGATCGGCCCGGTCC-CTCTTTGTGTCCTGTCGATCCCGCT
64 GAGAGGCAGAATGCGCAAGCTGA-GGATCGACCCGATCCAC-CCCTGCGTCCTGTCGATCCCGCT
** * ** *
15319311 ACCACAACCCTC-GAT-CTAACTAGGGCTTAAAC
127 ACCACAACCCTCAG-TCCTGTC-CGATCTTAGAC
* * ** * * ** * * *
15319343 ATGGAATGAACTCCGTATGGCTAAGAC-AACCCATGAAACGGGCGTGCGGGTGCTCAGCAGGCTG
1 -TGGGATGAACTCCGTATGCCTAAG-CTAACCCATGAAACGAACGTACAGGCACTCAGCCGACCG
* * * * * * * * *
15319407 GAGAGGCAGAATGCGTAA-ATCGGGGATCGGCCCGGTCC-CCCCTGCTTGCTGCCGATCCTGCTA
64 GAGAGGCAGAATGCGCAAGCT-GAGGATCGACCCGATCCACCCCTGCGTCCTGTCGATCCCGCTA
* * **
15319470 CCGCAACCCTCGGT-CTGGTTTGATCTTAGAC
128 CCACAACCCTCAGTCCT-GTCCGATCTTAGAC
15319501 TGGGAATGAACTC
1 TGGG-ATGAACTC
15319514 TGCATGCTTA
Statistics
Matches: 258, Mismatches: 58, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 3 0.01
158 57 0.22
159 195 0.76
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
TGGGATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAACGTACAGGCACTCAGCCGACCGGA
GAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCACCCCTGCGTCCTGTCGATCCCGCTACCA
CAACCCTCAGTCCTGTCCGATCTTAGAC
Found at i:15319546 original size:26 final size:26
Alignment explanation
Indices: 15319494--15319546 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15319484 CTGGTTTGAT
*
15319494 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
15319520 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15319546 C
1 C
15319547 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15320754 original size:26 final size:26
Alignment explanation
Indices: 15320716--15320768 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15320706 GGCTCAAACT
15320716 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
15320742 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
15320768 C
1 C
15320769 CTAAGGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15321442 original size:26 final size:26
Alignment explanation
Indices: 15321413--15321465 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15321403 CCAGTCCGAT
*
15321413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
15321439 CTTAGGCTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15321465 C
1 C
15321466 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15326796 original size:26 final size:26
Alignment explanation
Indices: 15326760--15326812 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15326750 TCAGTTTGAT
15326760 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15326786 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15326812 C
1 C
15326813 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15327169 original size:26 final size:26
Alignment explanation
Indices: 15327140--15327190 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15327130 CGGTCTAATC
15327140 TTAGAC-TGGGAATGAACTCCGTATGA
1 TTAGACAT-GGAATGAACTCCGTATGA
15327166 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
15327191 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGA
Found at i:15327785 original size:355 final size:353
Alignment explanation
Indices: 15326970--15327788 Score: 896
Period size: 353 Copynumber: 2.3 Consensus size: 353
15326960 TCGGCTGGGG
* * * * * *
15326970 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAA
* * * * * * *
15327034 CCGATCGGAGAGGCAGAATGTGCAA-TCCGGGGATCAGCCTGGT-CCCCCTGCGTACTATCGATC
65 CCGACCGGAGAGGCATAATGCGCAAGT-CGGGGATCAGCCCGATCCCCCCTACGTACTACCGATC
* ** * * * * *
15327097 CTGCTGTTGGTCTTACTGTCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGT
129 CTGCTGCTGGTCTTACTACCACAACCCTCAGTCCGATCCAATCTTAAACTGGGAATGAACTCCGA
* * * * *
15327162 ATGATTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCATGCGGGTGCTC
194 ATGATTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCATGCGAGAGCTC
*** *
15327227 AGTCGGCCGGAAAGGCAGAATGCACAAGTCGAGGATCAACCTGGTCCCCCTATGTGCTGTCGATC
259 AGTCGGCCGGAAAGGCAGAATGCACAAGTCGAGGATCAACCCAATCCCCCTATGTGCTGTCAATC
* * ** * *
15327292 CTGCTGCCGTAACCCTCAGTTCCATCTGAT
324 CTACTACCACAACCCTCAGTTCAATCTAAT
* * * *
15327322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACCAAACGAGCGCACGGGTGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAAC
* ** * * * * * **
15327387 CGGCTAGAGAGGCGTAATGCGCAAGTTGAGGATCAACCCGATCCCCCCTATGTTTTACCGATCCT
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACGTACTACCGATCCT
15327452 GCTGCTGGT-TCTACTACCACAACCAC-CAGTCCGATCCAATCTTAAACTGGGAATGAACTCCGA
131 GCTGCTGGTCT-TACTACCACAACC-CTCAGTCCGATCCAATCTTAAACTGGGAATGAACTCCGA
* * * * **
15327515 ATGCTTAGACATGGAATAAACTTCGTATGCTTAAGCCAACCAACGAGACAAGTGTGCGAGAGCTC
194 ATGATTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCATGCGAGAGCTC
* * * * * **
15327580 AG-CTGGTCGGAGAGGTAGAATGCACAAGTTGGGGATCGTCCCAATCCCCC-ACTTCGTGCTGTC
259 AGTC-GGCCGGAAAGGCAGAATGCACAAGTCGAGGATCAACCCAATCCCCCTA--T-GTGCTGTC
*
15327643 AATCCTACTACCACAACCCTCATTTCAATCTAAT
320 AATCCTACTACCACAACCCTCAGTTCAATCTAAT
* * * *
15327677 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGTGTTCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAAC
*
15327742 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCC
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCC
15327789 TCTGCATGCT
Statistics
Matches: 378, Mismatches: 80, Indels: 15
0.80 0.17 0.03
Matches are distributed among these distances:
351 1 0.00
352 84 0.22
353 161 0.43
354 2 0.01
355 130 0.34
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.21
Consensus pattern (353 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAAC
CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACGTACTACCGATCCT
GCTGCTGGTCTTACTACCACAACCCTCAGTCCGATCCAATCTTAAACTGGGAATGAACTCCGAAT
GATTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCATGCGAGAGCTCAG
TCGGCCGGAAAGGCAGAATGCACAAGTCGAGGATCAACCCAATCCCCCTATGTGCTGTCAATCCT
ACTACCACAACCCTCAGTTCAATCTAAT
Found at i:15327840 original size:159 final size:158
Alignment explanation
Indices: 15327517--15328020 Score: 379
Period size: 159 Copynumber: 3.2 Consensus size: 158
15327507 AACTCCGAAT
* * * * * * * * * *
15327517 GCTTAGACAT-GGAATAAACTTCGTATGCTTAAGCCAACCAACGAGACAAGTGTGCGAGAGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * ** * * * *
15327581 GCTGGTCGGAGAGGTAGAATGCACAAGTTGGGGATC-GTCCCAATCCCCCACTTCGTGCTGTCAA
65 GCCAGCCGGAGACGCAGAATGCACAAGTCAGGGATCAG-CCCGATCCCCC-CTACATGCTGCCAA
* ** * * *
15327645 TCCTACTACCACAACCCTCATTTC-AATCTAA
128 TCCTGCTACCACAACCCTCGGTCCGACTC-GA
* * * * * * *
15327676 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGTGTTCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
15327741 CC-GACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCAAT
66 CCAG-CCGGAGACGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCCC-CTACATGCTGCCAAT
* * *
15327805 CCTGCTACCACAACCCTCGGTCCGGCTGGG
129 CCTGCTACCACAACCCTCGGTCCGACTCGA
* * * *
15327835 GCTTAGACAT-GGAATGAACTCCCTATGTCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
15327899 GCCAGTCGGAGACGCAGAATGCACAAGTCAGGGATCAGCTCGGTCTCCCCTACGTGCTGTCAATC
65 GCCAGCCGGAGACGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCCCCTACATGCTGCCAATC
** * * *
15327964 CTGCTGTCGCAACCCTTGGTCCGATTCGA
130 CTGCTACCACAACCCTCGGTCCGACTCGA
*
15327993 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAATGAACTCCATATGC
15328021 TTAGACTGGT
Statistics
Matches: 272, Mismatches: 66, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 59 0.22
159 208 0.76
160 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGACGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCCCCTACATGCTGCCAATCC
TGCTACCACAACCCTCGGTCCGACTCGA
Found at i:15328035 original size:26 final size:26
Alignment explanation
Indices: 15327994--15328046 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15327984 CCGATTCGAT
15327994 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15328020 CTTAGACTGGTG-ATGAACTCCATATG
1 CTTAGACTGG-GAATGAACTCCATATG
15328046 C
1 C
15328047 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15328558 original size:198 final size:197
Alignment explanation
Indices: 15328203--15328648 Score: 594
Period size: 198 Copynumber: 2.3 Consensus size: 197
15328193 TCTGACTGGG
* * *
15328203 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACACTCAG
* * * * *
15328268 CTGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATAGGCTCAGTCCCCTCCTGCGTGCTGCCAATC
66 CTAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATAGACCCAGTCCCCTCCTACGTGCTGCCAATC
* * *
15328333 CTGCTACTAGTCCTACTACCGCAACCCTCGGTACGATCCGATCTTTGACTGGGAATGAACTCCAT
131 CTGCTACTAGTCCTACTACCGCAACCCTCGATACGATCCAATCTTAGACTGGGAATGAACTCCAT
15328398 AT
196 AT
*
15328400 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCCCGG-CACTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG--CGGACACTC
* * * * *
15328464 AG-TCAGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCC-GAT-CCCTCCCTACGTGCTGT
64 AGCT-AGCCAGAGAGGCAGAATGCGCAAGCCGGGGATAGACCCAG-TCCCCT-CCTACGTGCTGC
* * * * *
15328526 CGATCCTGCTGCTGGTCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAAC
126 CAATCCTGCTACTAGTCCTACTACCGCAACCCTCGATACGATCCAATCTTAGACTGGGAATGAAC
*
15328591 TCCTTAT
191 TCCATAT
* *
15328598 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC
15328649 ATATGGGCGC
Statistics
Matches: 218, Mismatches: 26, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
197 57 0.26
198 158 0.72
199 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACACTCAG
CTAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATAGACCCAGTCCCCTCCTACGTGCTGCCAATC
CTGCTACTAGTCCTACTACCGCAACCCTCGATACGATCCAATCTTAGACTGGGAATGAACTCCAT
AT
Found at i:15328611 original size:26 final size:26
Alignment explanation
Indices: 15328573--15328625 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15328563 CCGATCCAAT
*
15328573 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15328599 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15328625 C
1 C
15328626 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15329981 original size:26 final size:26
Alignment explanation
Indices: 15329952--15330004 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15329942 TCTGATCTGA
*
15329952 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
15329978 CTTAGATTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
15330004 C
1 C
15330005 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:15330324 original size:26 final size:26
Alignment explanation
Indices: 15330295--15330347 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15330285 CCGATCTGAT
*
15330295 CTTAGATTGG-GAATGAACTCTGTATG
1 CTTAGATTGGCG-ATGAACTCTATATG
15330321 CTTAGATTGGCGATGAACTCTATATG
1 CTTAGATTGGCGATGAACTCTATATG
15330347 C
1 C
15330348 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGCGATGAACTCTATATG
Found at i:15330545 original size:344 final size:343
Alignment explanation
Indices: 15329794--15330733 Score: 1499
Period size: 344 Copynumber: 2.7 Consensus size: 343
15329784 AACTCCGTAT
* *
15329794 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
1 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCGCTCA
* * * * * * * *
15329858 GCCAACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCTCCTACGTGTTGCTGATC
65 GTCGACCGGAGAGGTAAAATGCGCATGCCGGGGATCGACCCGGTCCCTCCTACGTGCTACTGATC
** * *
15329923 CTATTATCGTAACCCTCGGTCTGATCTGA-CTTAGACTGGGAATGAACTCTGTATGCTTAGATTG
130 CTGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTG
15329987 GGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAC
195 GGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAC
* ** * *
15330052 AGGTAGAATGTGAAAGTCGGGGATCAGCTCGGTCCCCCTCTGCATGCTGCCGATCCCACTGGCAC
260 AAGTAGAATGCAAAAATCGGGGATCAGCTCGGTCCCCCTCTACATGCTGCCGATCCCACTGGCAC
15330117 AACCCTCGGTCTGGCTGGG
325 AACCCTCGGTCTGGCTGGG
*
15330136 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGAGTGCGGGCGCTCAG
1 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
*
15330201 TCGACCGGAGAGGTAAAATGCGCATGCCGGGGATCGACCCGGTCCCCCCTACGTGCTACTGATCC
66 TCGACCGGAGAGGTAAAATGCGCATGCCGGGGATCGACCCGGTCCCTCCTACGTGCTACTGATCC
* *
15330266 TGCCATCGTAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGATTGG
131 TGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGG
* * *
15330331 CGATGAACTCTATATGCCTAAATCAACCCACGAAACGAGCGTGCGGGCGTTCAGCTGGCCAGACA
196 GGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGACA
*
15330396 AGTAGAATGCAAAAATCGGGGATCAAGC-CTGGTCCCCCTCTACGTGCTGCCGATCCCACTGGCA
261 AGTAGAATGCAAAAATCGGGGATC-AGCTC-GGTCCCCCTCTACATGCTGCCGATCCCACTGGCA
15330460 CAACCCTCGGTCTGGCTGGG
324 CAACCCTCGGTCTGGCTGGG
* *
15330480 GCTTATACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACAGGCGTGCGGGTGCTCAG
1 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
* * * * *
15330545 TCGACCGGAGAGGTAAAATGTGCATGCCGGGGACCGACCTGGTCCCTCCTACTTGCTACCGATCC
66 TCGACCGGAGAGGTAAAATGCGCATGCCGGGGATCGACCCGGTCCCTCCTACGTGCTACTGATCC
*
15330610 TGCTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGG
131 TGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGG
* *
15330675 GGATGAACTCTGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCGCTCAGCTGGC
196 GGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGC
15330734 TGGATAGCTA
Statistics
Matches: 550, Mismatches: 44, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
342 139 0.25
343 119 0.22
344 292 0.53
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (343 bp):
GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
TCGACCGGAGAGGTAAAATGCGCATGCCGGGGATCGACCCGGTCCCTCCTACGTGCTACTGATCC
TGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGG
GGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGACA
AGTAGAATGCAAAAATCGGGGATCAGCTCGGTCCCCCTCTACATGCTGCCGATCCCACTGGCACA
ACCCTCGGTCTGGCTGGG
Found at i:15330668 original size:26 final size:26
Alignment explanation
Indices: 15330639--15330691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15330629 CCGATCTGAT
15330639 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
15330665 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15330691 C
1 C
15330692 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15331106 original size:158 final size:159
Alignment explanation
Indices: 15330814--15331455 Score: 543
Period size: 158 Copynumber: 4.1 Consensus size: 159
15330804 TCTTACTACC
* * * * * *
15330814 GCAAGCCTCAGTCTGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
1 GCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * *
15330879 AACGAGCTTGCGAGCGCTTAGCCTGCCGAAGAGGCAGAATGCGCAAGTCG-GGA-CAGGCCTGAT
66 AACGAGCATACGGGCGCTGAGCCAGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCA-GCCCGGT
* * *
15330942 CACCCCT-TACGTGCTGTTGATCTTGCTGCT
130 C-CCCCTCTGCGTGCTGTCGATCCTGCTGCT
* * * * * *
15330972 GCAACCCTCAGTCCGATCCGCTCTTACACTGGGAATGAACTTCGTTTGCCTAAGTCAGCCCATGA
1 GCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * **
15331037 AACGAGCGTACGGGCACTGAGTCAGTCGAAGAGGCATAATGCATAAGTCGAGGATCAGCCCGGTC
66 AACGAGCATACGGGCGCTGAGCCAGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTC
* * * *
15331102 CCCCTCTGCGTGCTGCCGGTCCCGCTGCC
131 CCCCTCTGCGTGCTGTCGATCCTGCTGCT
* * * ** * *
15331131 ACAACCTTC-GATCCGGTTGGAGCGTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCAC
1 GCAACCCTCAG-TCCGATCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
15331194 GAAACGAGCATACGGGTGCT-CGCTC-GACCAGAGAGGTAGAATGCGCAAGCCGAGGATC-GACC
64 GAAACGAGCATACGGGCGCTGAGC-CAGTCGA-AGAGGCAGAATGCGCAAGTCGAGGATCAG-CC
* *
15331256 CAGT-CCCCTCTGCGTGCTGTCAATCCTGCTG-T
126 CGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCT
* * * * *
15331288 CGTAACCCTCAGTCTGATCCGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCATG
1 -GCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
15331353 AAACGAGCATACGGGTGCTGAGCCAGTCGGAGAGGCATAATGCGCAAG-CCAGGGAT-TGACTCG
65 AAACGAGCATACGGGCGCTGAGCCAGTCGAAGAGGCAGAATGCGCAAGTCGA-GGATCAG-CCCG
* * *
15331416 GTCCCCCTCTGCATGCTGTCGATCCCGCTGCC
128 GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCT
*
15331448 ACAACCCT
1 GCAACCCT
15331456 AGGTCCGGCT
Statistics
Matches: 377, Mismatches: 90, Indels: 33
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 220 0.58
159 151 0.40
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCATACGGGCGCTGAGCCAGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTC
CCCCTCTGCGTGCTGTCGATCCTGCTGCT
Found at i:15331274 original size:317 final size:317
Alignment explanation
Indices: 15330845--15331453 Score: 736
Period size: 317 Copynumber: 1.9 Consensus size: 317
15330835 TCTTAGGCTG
* *
15330845 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGAGCGCTTAGCCTGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTTAGCCTGCCGAAG
* * * ** *
15330910 AGGCAGAATGCGCAAGTCGGGACAGGCCTGATCACCCCTTACGTGCTGTTGATCTTGCTG-CTGC
66 AGGCAGAATGCGCAAGCCGGGACAGCCCAGATCACCCCTTACGTGCTGTCAATCCTGCTGTC-GC
* * * *
15330974 AACCCTCAGTCCGATCCGCTCTTACACTGGGAATGAACT-TCGTTTGCCTAAGTCAGCCCATGAA
130 AACCCTCAGTCCGATCCGATCTTACACTGGGAATAAACTCT-GTATGCCTAAGTCAACCCATGAA
* * * *
15331038 ACGAGCGTACGGGCACTGAGTCAGTCGAAGAGGCATAATGCATAAGTC-GAGGATCAG-CCCGGT
194 ACGAGCATACGGGCACTGAGCCAGTCGAAGAGGCATAATGCACAAGCCAG-GGAT-AGACCCGGT
* *
15331101 CCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCTTCGATCCGGTTGGAGCGTAGACAT
257 CCCCCTCTGCATGCTGCCGATCCCGCTGCCACAACCTTCGATCCGGTTGGAGCGTAGACAT
* * * *
15331162 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGC-TCG-CTCGACC-A
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTTAGCCT-G-CCGA
* *
15331224 GAGAGGTAGAATGCGCAAGCCGAGGATC-GACCCAG-T--CCCCTCTGCGTGCTGTCAATCCTGC
64 -AGAGGCAGAATGCGCAAGCCG-GGA-CAG-CCCAGATCACCCCT-TACGTGCTGTCAATCCTGC
* * *
15331285 TGTCGTAACCCTCAGTCTGATCCGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCC
124 TGTCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATAAACTCTGTATGCCTAAGTCAACCC
** * * * *
15331350 ATGAAACGAGCATACGGGTGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATTGACTC
189 ATGAAACGAGCATACGGGCACTGAGCCAGTCGAAGAGGCATAATGCACAAGCCAGGGATAGACCC
*
15331415 GGTCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACC
254 GGTCCCCCTCTGCATGCTGCCGATCCCGCTGCCACAACC
15331454 CTAGGTCCGG
Statistics
Matches: 247, Mismatches: 34, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
315 2 0.01
316 10 0.04
317 223 0.90
318 8 0.03
319 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (317 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTTAGCCTGCCGAAG
AGGCAGAATGCGCAAGCCGGGACAGCCCAGATCACCCCTTACGTGCTGTCAATCCTGCTGTCGCA
ACCCTCAGTCCGATCCGATCTTACACTGGGAATAAACTCTGTATGCCTAAGTCAACCCATGAAAC
GAGCATACGGGCACTGAGCCAGTCGAAGAGGCATAATGCACAAGCCAGGGATAGACCCGGTCCCC
CTCTGCATGCTGCCGATCCCGCTGCCACAACCTTCGATCCGGTTGGAGCGTAGACAT
Found at i:15332138 original size:26 final size:26
Alignment explanation
Indices: 15332100--15332150 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15332090 GGCTTAAACT
15332100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15332126 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
15332151 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15332219 original size:26 final size:27
Alignment explanation
Indices: 15332188--15332241 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
15332178 GCGGGCGCTC
*
15332188 AGCCGACCATAGAGGCAGAATG-CGCA
1 AGCCGACCAGAGAGGCAGAATGCCGCA
15332214 AGCCGACCAGAGAGGCAGAATGCCGCA
1 AGCCGACCAGAGAGGCAGAATGCCGCA
15332241 A
1 A
15332242 CCCTTGATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.35, C:0.28, G:0.31, T:0.06
Consensus pattern (27 bp):
AGCCGACCAGAGAGGCAGAATGCCGCA
Found at i:15332315 original size:26 final size:26
Alignment explanation
Indices: 15332260--15332316 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
15332250 CCAGTCCGAT
** *
15332260 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCATATA
15332286 CTTAGACTAGGG-ATGAACTTCATATA
1 CTTAGACT-GGGAATGAACTTCATATA
15332312 CTTAG
1 CTTAG
15332317 GCTGAATGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATA
Found at i:15332504 original size:26 final size:26
Alignment explanation
Indices: 15332466--15332518 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15332456 CCAATCTAAT
15332466 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15332492 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15332518 C
1 C
15332519 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15332812 original size:26 final size:26
Alignment explanation
Indices: 15332762--15332813 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15332752 TGCGTGTTGT
*
15332762 TTAGACTGGGAATGAACTTCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
15332788 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
15332814 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:15333679 original size:26 final size:26
Alignment explanation
Indices: 15333643--15333695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15333633 CCAGTCTGAT
*
15333643 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15333669 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15333695 C
1 C
15333696 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15334057 original size:26 final size:26
Alignment explanation
Indices: 15334019--15334071 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15334009 ATGCAAAAAT
15334019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15334045 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15334071 C
1 C
15334072 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15334350 original size:26 final size:26
Alignment explanation
Indices: 15334304--15334358 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
15334294 CTCTGTGTGC
* *
15334304 TGCTTAGACTAGGAATGAACTTCGTA
1 TGCTTAGACTAGGAATAAACTCCGTA
* *
15334330 TGCTTAGACTGGGGATAAACTCCGTA
1 TGCTTAGACTAGGAATAAACTCCGTA
15334356 TGC
1 TGC
15334359 CTAGGTTAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TGCTTAGACTAGGAATAAACTCCGTA
Found at i:15334553 original size:26 final size:26
Alignment explanation
Indices: 15334515--15334567 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15334505 CCGATCCGAT
15334515 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15334541 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15334567 C
1 C
15334568 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15335266 original size:184 final size:184
Alignment explanation
Indices: 15334857--15335338 Score: 551
Period size: 185 Copynumber: 2.6 Consensus size: 184
15334847 TCCGACTGGG
* * ** * * *
15334857 GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCACAAAATGGGCGTGCAGACGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG-CGCTCAG
* * * * * **
15334922 CCGACCCGAGAGGCAAAATGCGCAAGCTAGGGATCGGC-TCGATCCCCACTGCATGCTGTCGATC
65 TCGACCAGAGAGGCAAAATGCGTAAGC-AAGGATCGGCTTAGATCCCCACTGCATGCTACCGATC
* * * * *
15334986 TTGCTACCGTAACCCTTGATCTGGTCTAATGTTATACTGGGAAATGAACTCCGTAT
129 CTGCTACCGCAACCCTCGATCTGGTCTAATCTTAGACTGGGAAATGAACTCCGTAT
* * * *
15335042 GCTTAGACT-GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAAGCGCTCA
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-AGCGCTCA
* * * * *
15335106 GTCGGCCAGAAAGGCAGAATGCGTAAGTCGAGGATCAGCTTAG-TCGCCC-CTGCATGCTACCGA
64 GTCGACCAGAGAGGCAAAATGCGTAAG-CAAGGATCGGCTTAGATC-CCCACTGCATGCTACCGA
*
15335169 TCCTGCTACCGCAACCCTCGATCTGGTCTAATCTTAGACTGTG-AATGAACTCCGTAT
127 TCCTGCTACCGCAACCCTCGATCTGGTCTAATCTTAGACTGGGAAATGAACTCCGTAT
* * *
15335226 GCTTAGATATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-AGCGCTCAG
* *
15335291 TCGACCGGAGAGGCAAAATGCGTAAGCCAAGGATCGGCTTCGATCCCC
65 TCGACCAGAGAGGCAAAATGCGTAAG-CAAGGATCGGCTTAGATCCCC
15335339 CCATACGTGC
Statistics
Matches: 245, Mismatches: 45, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
183 1 0.00
184 106 0.43
185 130 0.53
186 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (184 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGCGCTCAGT
CGACCAGAGAGGCAAAATGCGTAAGCAAGGATCGGCTTAGATCCCCACTGCATGCTACCGATCCT
GCTACCGCAACCCTCGATCTGGTCTAATCTTAGACTGGGAAATGAACTCCGTAT
Found at i:15335521 original size:26 final size:26
Alignment explanation
Indices: 15335480--15335532 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15335470 TCGGTCTGAT
15335480 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
15335506 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15335532 C
1 C
15335533 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15336249 original size:25 final size:26
Alignment explanation
Indices: 15336213--15336262 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
15336203 GCTCAAAATC
15336213 TTAGACTGGGAATGAACTC-GTATGT
1 TTAGACTGGGAATGAACTCTGTATGT
15336238 TTAGACAT-GGAATGAACTCTGTATG
1 TTAGAC-TGGGAATGAACTCTGTATG
15336263 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGT
Found at i:15336613 original size:159 final size:157
Alignment explanation
Indices: 15336238--15336672 Score: 448
Period size: 159 Copynumber: 2.8 Consensus size: 157
15336228 ACTCGTATGT
* *
15336238 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
*** ** * ***
15336303 GGTCGAAGAGGCAGAATGCGCAAGCC-AGGGATCGGTTCGATCCCCC-CTATGTACTGTTGATCC
66 GGTCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGCCCCG-TCCCCCTCTGCGTGCTACCGATCC
* *
15336366 TGTTGCCACAACCATTGGTTCGGTCTGATC
129 TATTGCCACAACCATTGGTTC-GTCTGAGC
* * * * *
15336396 TTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATTAAACGAGCGTACGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
15336460 CGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCCGTCCCCCTCTGCGTGCTACCGGTCC
65 CGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATC-GCCCCGTCCCCCTCTGCGTGCTACCGATCC
* * *
15336525 TATTGCCATAACCCTTGGTTC-TACTGGGGC
129 TATTGCCACAACCATTGGTTCGT-CT-GAGC
** * * * *
15336555 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAATCGGGCGTGCAGGCGCTCAGCC
1 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
15336620 GGCCAAAGAGGCAGAATGCGCCAGTCGGGGATCGGCCCGGTCCCCCT-TGCGTG
66 GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATC-GCCCCGTCCCCCTCTGCGTG
15336673 TTGTCGATCC
Statistics
Matches: 228, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 100 0.44
159 125 0.55
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGCCCCGTCCCCCTCTGCGTGCTACCGATCCTA
TTGCCACAACCATTGGTTCGTCTGAGC
Found at i:15338345 original size:26 final size:26
Alignment explanation
Indices: 15338316--15338385 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
15338306 TCTTACACTG
*
15338316 GGAATGAACTCCGTATGCTTAGACAA
1 GGAATGAACTTCGTATGCTTAGACAA
*
15338342 GGAATGAACTTCGTATGCTTAGACAT
1 GGAATGAACTTCGTATGCTTAGACAA
15338368 GGAATGAACTTCGTATGC
1 GGAATGAACTTCGTATGC
15338386 CTAAGCTAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (26 bp):
GGAATGAACTTCGTATGCTTAGACAA
Found at i:15338911 original size:26 final size:26
Alignment explanation
Indices: 15338882--15338951 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
15338872 TCTTACACTG
15338882 GGAATGAACTCCGTATGCTTAGACAA
1 GGAATGAACTCCGTATGCTTAGACAA
*
15338908 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAA
15338934 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
15338952 CTAAGCTAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAA
Found at i:15339134 original size:26 final size:26
Alignment explanation
Indices: 15339096--15339147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15339086 CGATCTGATT
15339096 TTAGACTGCGAATGAACTCCGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
15339122 TTAGACATG-GAATGAACTCCGTATGC
1 TTAGAC-TGCGAATGAACTCCGTATGC
15339148 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGC
Found at i:15343361 original size:26 final size:26
Alignment explanation
Indices: 15343322--15343374 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15343312 CCGATTTGAT
15343322 CTTAGACTGAGAATGAAC-TCTGTATG
1 CTTAGACTGAGAATGAACTTC-GTATG
15343348 CTTAGACATG-GAATGAACTTCGTATG
1 CTTAGAC-TGAGAATGAACTTCGTATG
15343374 C
1 C
15343375 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:15343853 original size:26 final size:26
Alignment explanation
Indices: 15343824--15343874 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15343814 AGTCTGATCG
* *
15343824 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATAAACTCCGTATGCT
*
15343850 TAGACTGGGGATAAACTCCGTATGC
1 TAGACTGGGAATAAACTCCGTATGC
15343875 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCT
Found at i:15344570 original size:26 final size:26
Alignment explanation
Indices: 15344541--15344593 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15344531 GGCTCGAAAT
*
15344541 CTTAGAC-TGCGAATGAACTCGGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
15344567 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15344593 C
1 C
15344594 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15345325 original size:171 final size:166
Alignment explanation
Indices: 15345024--15345710 Score: 549
Period size: 159 Copynumber: 4.2 Consensus size: 166
15345014 AACTCCGTAT
* * * * * * * *
15345024 GCTTAAACATGGAATGAACTCCGTGTGCCTAAGCCAACCTATGAAATGAGCCTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
15345089 CAGGCCGGAAAGGCATAATACGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGATC
66 CCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCT-TGCGTGCTATCGAT-
* * *
15345154 CCACTGTCGGTCCTGCTGCCACAACCCTTGGTCCGACTGGA
129 -CGCTGTCGGT-CTGCTG-CACAACCCTCGATCCGACTGGA
* * *
15345195 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACACACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
15345260 CCGGTCGGAGAGGCAGAATGTGTAAGCTGGGGATCAGCCCGGTCCGCCCTTACGTGCTATCGATC
66 CCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCC-CCCTTGCGTGCTATCGATC
* * *
15345325 -C--T--G-CTG-T-CGCAACCCTCGGTCCGA-TCGTA
130 GCTGTCGGTCTGCTGCACAACCCTCGATCCGACT-GGA
* * * * * * *
15345354 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGTGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * *
15345418 GCCGGCCAGAAAGGCATAATGCGCAAGCCGGGGATTGGCCCGAT-TCCC---C-T-CTA-CG-T-
65 GCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCGTGCTATCGATC
* * * *
15345474 GCTGTCGGTCTCGTTGCCACAACCCTCAATCCGATTGGG
130 GCTGTCGGTCT-GCTG-CACAACCCTCGATCCGACTGGA
* *
15345513 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
15345577 ACCGGCC-GAAGAGGCAGAATGTGCAAGCCAGGGATCTGCCCGGTCCCCCTTGCGTGCTGTCGAT
65 GCCGGCCGGAA-AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCGTGCTATCGAT
15345641 C-CTGCTGCTGGTCCTGCTGCAGCAACCCTCGATCCGATCT-GA
129 CGCTG-T-C-GGT-CTGCTGCA-CAACCCTCGATCCGA-CTGGA
*
15345683 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15345711 TTAGTCATGG
Statistics
Matches: 409, Mismatches: 73, Indels: 69
0.74 0.13 0.13
Matches are distributed among these distances:
150 2 0.00
151 2 0.00
152 4 0.01
153 1 0.00
154 2 0.00
155 2 0.00
156 1 0.00
157 4 0.01
158 5 0.01
159 203 0.50
160 5 0.01
161 1 0.00
162 3 0.01
163 1 0.00
164 2 0.00
165 2 0.00
166 3 0.01
167 4 0.01
168 2 0.00
169 6 0.01
170 44 0.11
171 106 0.26
172 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (166 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCGTGCTATCGATCG
CTGTCGGTCTGCTGCACAACCCTCGATCCGACTGGA
Found at i:15345713 original size:26 final size:26
Alignment explanation
Indices: 15345684--15345736 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15345674 CCGATCTGAT
15345684 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15345710 CTTAGTCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15345736 C
1 C
15345737 CTAAGCCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15345999 original size:154 final size:154
Alignment explanation
Indices: 15345719--15346013 Score: 375
Period size: 154 Copynumber: 1.9 Consensus size: 154
15345709 GCTTAGTCAT
* * * * *
15345719 GGAATGAACTCCGTATGCCTAAGCCATCCCATGAAATGAGCGTGCGGGCGCTTAGCCGGTCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGTCGGAG
* * * *
15345784 AGGTAGAATGCGCAAGTCGGGGACCGACCGGATCCCCATCTGCATGCTATCGGTCCTGCTGCCAC
66 AGGCAGAATGCGCAAGTCGGGGACAGACCGGATCCCCATCTACATGCTATCGGTCCCGCTGCCAC
15345849 AACCCTCGATCCGATCTTAGACTG
131 AACCCTCGATCCGATCTTAGACTG
*
15345873 GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGGT-GGA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCC-GGTCGGA
* * * * *
15345937 GAGGCATAATGCGTAAGTCGGGGATCAG-CTCGG-TCCCCCTCTACGTG-T-TGCATGTCCCGCT
65 GAGGCAGAATGCGCAAGTCGGGGA-CAGAC-CGGATCCCCATCTACATGCTAT-C-GGTCCCGCT
15345998 GCCACAACCCTCGATC
126 GCCACAACCCTCGATC
15346014 TGGTTGGGGC
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
152 1 0.01
153 2 0.02
154 110 0.91
155 8 0.07
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (154 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGTCGGAG
AGGCAGAATGCGCAAGTCGGGGACAGACCGGATCCCCATCTACATGCTATCGGTCCCGCTGCCAC
AACCCTCGATCCGATCTTAGACTG
Found at i:15346109 original size:668 final size:661
Alignment explanation
Indices: 15344842--15346135 Score: 1402
Period size: 668 Copynumber: 1.9 Consensus size: 661
15344832 CCAGCTACGA
* *
15344842 CTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGGGCATACGAACACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGAACACTCAAC
*
15344907 CGACCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTATGTGCTATCGATCCTA
66 CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTATGTGCTATCGATCCTA
* *
15344972 TTGTCGCAACCCTCGATCCAGTTCAATCTTAGATTAGGAATGAACTCCGTATGCTTAAACATGGA
131 TTGTCGCAACCCTCGATCCAGATCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACATGGA
* *
15345037 ATGAACTCCGTGTGCCTAAGCCAACCTATGAAATGAGCCTACGGGCACTCAGCAGGCCGGAAAGG
196 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCCTACGGGCACTCAGCAGGCCGGAAAGG
* * *
15345102 CATAATACGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGATCCCACTGTCGGTCC
261 CAGAATACGCAAGCCGAGGATCAGACCGGTCCCCATC---GTGCTGTC-AT--CAC--TCGGTCC
* * *
15345167 TGCTGCCACAACCCTTGGTCCGACTGGAGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAA
318 TGCTGCCACAACCCTCGATCCGACT---GCTTAGACATGGAATGAACTCCACATGCCTAAGCCAA
* * *
15345232 CACACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGTGTAAGCTGGGGATCAG
380 CACACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCAG
* * * * * *
15345297 CCCGGTCCGCCCTTACGTGCTATCGATCCTGCTGTCGCAACCCTCGGTCCGATCGTATCTTAGAC
445 CCCGGTCCGCCCTTACGTGCTATCGATCCCGCTGCCACAACCCTCGATCCGATCGGAGCTTAGAC
* * * * * *
15345362 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGTGTGCGGGTGCTAAGCCGGCCAG
510 TGGGAATGAACTCTGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCAGCCAG
* * * *
15345427 AAAGGCATAATGCGCAAGCCGGGGATTGGCCCGATTCCCCTCTACGTGCTGTCGGTCTCGTTGCC
575 AAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCTCGTTGCC
15345492 ACAACCCTCAATCCGATTGGGG
640 ACAACCCTCAATCCGATTGGGG
* * ** ** *
15345514 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGAACACTCAAC
* * *
15345579 CGGCCGAAGAGGCAGAATGTGCAAGCC-AGGGATCTG-CCCGGTCCCCCT-TGCGTGCTGTCGAT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGA-GGATC-GACCCGGTCCCCCTAT--GTGCTATCGA-
* *
15345641 CCTGCTGCTGGTCCTGCTGCAGCAACCCTCGATCC-GATCTGATCTTAGACTAGGAATGAACTCC
126 --T-C--CT-AT--TG-T-C-GCAACCCTCGATCCAGATC-AATCTTAGACTAGGAATGAACTCC
** * * * *
15345705 GTATGCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAATGAGCGTGCGGGCGC
179 GTATGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCCTACGGGCAC
* * * * * * * * *
15345770 TTAGCCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGA-CCGACCGGATCCCCATC-TGCATG-C-
244 TCAGCAGGCCGGAAAGGCAGAATACGCAAGCCGAGGATCAGACCGG-TCCCCATCGTGC-TGTCA
*
15345831 T-A-TCGGTCCTGCTGCCACAACCCTCGATCCGA-T-CTTAGAC-TGGGAATGAACTCCATATGC
307 TCACTCGGTCCTGCTGCCACAACCCTCGATCCGACTGCTTAGACAT-GGAATGAACTCCACATGC
* * * * *
15345891 CTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGGT-GGAGAGGCATAATGCGTAAG-
371 CTAAGCCAACACACGAAACGAGCGTGCGGGCACTCAGCC-GGTCGGAGAGGCAGAATGCGTAAGC
* * *
15345954 TCGGGGATCAGCTCGGTCC-CCCTCTACGTGTTGCAT-G-TCCCGCTGCCACAACCCTCGATCTG
435 T-GGGGATCAGCCCGGTCCGCCCT-TACGTGCT--ATCGATCCCGCTGCCACAACCCTCGATCCG
* * * * * *
15346016 GTTGGGGCTTAGACAT-GGAATGAACTCTGTATGCCAAAGCCAACTCACGAAATGGGCGTGCGGG
496 ATCGGAGCTTAGAC-TGGGAATGAACTCTGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGG
* ** ** *
15346080 CGCTCAGGTAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCT
560 CGCTAAGCCAGCCAGAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCT
15346136 TGTGTGCTGC
Statistics
Matches: 516, Mismatches: 80, Indels: 56
0.79 0.12 0.09
Matches are distributed among these distances:
667 6 0.01
668 211 0.41
669 5 0.01
670 2 0.00
671 2 0.00
672 98 0.19
673 38 0.07
676 2 0.00
677 1 0.00
679 3 0.01
680 1 0.00
681 4 0.01
682 4 0.01
683 1 0.00
684 10 0.02
685 128 0.25
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (661 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGAACACTCAAC
CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTATGTGCTATCGATCCTA
TTGTCGCAACCCTCGATCCAGATCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCCTACGGGCACTCAGCAGGCCGGAAAGG
CAGAATACGCAAGCCGAGGATCAGACCGGTCCCCATCGTGCTGTCATCACTCGGTCCTGCTGCCA
CAACCCTCGATCCGACTGCTTAGACATGGAATGAACTCCACATGCCTAAGCCAACACACGAAACG
AGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCAGCCCGGTCCGCC
CTTACGTGCTATCGATCCCGCTGCCACAACCCTCGATCCGATCGGAGCTTAGACTGGGAATGAAC
TCTGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCAGCCAGAAAGGCAGAAT
GCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCTCGTTGCCACAACCCTCAA
TCCGATTGGGG
Found at i:15346210 original size:26 final size:26
Alignment explanation
Indices: 15346181--15346233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15346171 CCGGTCTGAT
*
15346181 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15346207 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15346233 C
1 C
15346234 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15347280 original size:26 final size:26
Alignment explanation
Indices: 15347239--15347291 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15347229 CTGATTGGAT
15347239 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15347265 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15347291 C
1 C
15347292 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15347464 original size:26 final size:26
Alignment explanation
Indices: 15347435--15347487 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15347425 CTGATCCGAT
*
15347435 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15347461 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15347487 C
1 C
15347488 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15347728 original size:158 final size:158
Alignment explanation
Indices: 15347461--15347963 Score: 530
Period size: 159 Copynumber: 3.2 Consensus size: 158
15347451 ACTCTGTATG
* * * * *
15347461 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* ** * *
15347525 CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGA-CTGGCCTAGTCCCCCCTACGTGCTGTCGATC
65 CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATC-GACCCGGTCCCCCCTGCGTGCTGCCGATC
*
15347589 CTGCTACTGCAACCCTCGGTCTGGCCTGAT
129 CTGCTACCGCAACCCTCGGTCTGGCCTGAT
* * ** * *
15347619 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
* * * * * * *
15347684 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGTTGCCGGTCC
66 TGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCGATCC
* * * * * * **
15347749 CGCTGCCACATCCCTCGGTC-CGACTGGGG
130 TGCTACCGCAACCCTCGGTCTGGCCT-GAT
* * * *
15347778 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGAGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * *
15347842 CTGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTACCGATCC
65 CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCC
*
15347907 TGCTGACCGCAACCCTCGGTCTGGTCC-CAT
130 TGCT-ACCGCAACCCTCGGTCTGG-CCTGAT
*
15347937 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15347964 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 110 0.40
159 159 0.58
160 2 0.01
161 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
TGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTACCGCAACCCTCGGTCTGGCCTGAT
Found at i:15348698 original size:26 final size:26
Alignment explanation
Indices: 15348660--15348712 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15348650 GGCTCACACT
15348660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15348686 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15348712 C
1 C
15348713 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15349038 original size:26 final size:26
Alignment explanation
Indices: 15349002--15349054 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15348992 CTAGTTTGAC
15349002 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
15349028 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
15349054 C
1 C
15349055 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:15349237 original size:26 final size:26
Alignment explanation
Indices: 15349199--15349251 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15349189 CCGATCTGAT
15349199 CTTAGACTGGG-AATGAACTCCATATG
1 CTTAGACTGGGAAAT-AACTCCATATG
*
15349225 CTTAGACAT-GGAAATAACTCCGTATG
1 CTTAGAC-TGGGAAATAACTCCATATG
15349251 C
1 C
15349252 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAATAACTCCATATG
Found at i:15349907 original size:26 final size:26
Alignment explanation
Indices: 15349871--15349923 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15349861 CTGGTTAGAT
15349871 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15349897 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15349923 C
1 C
15349924 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15350104 original size:26 final size:26
Alignment explanation
Indices: 15350066--15350117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15350056 CCAGTTTGAT
15350066 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15350092 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15350118 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15350448 original size:26 final size:26
Alignment explanation
Indices: 15350419--15350470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15350409 TCTGTCCGAT
15350419 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15350445 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15350471 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15350891 original size:26 final size:26
Alignment explanation
Indices: 15350813--15350884 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
15350803 CTGATCCGAT
15350813 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
15350839 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
15350865 CTTAGACATGGAATGAACTC
1 CTTAGACATGGAATGAACTC
15350885 TGTATGCCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 44 0.98
27 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15351328 original size:26 final size:26
Alignment explanation
Indices: 15351285--15351337 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15351275 CCGGTTCGAT
15351285 CTTAGACTAGGAACGAACTCAGTATG
1 CTTAGACTAGGAACGAACTCAGTATG
* * * *
15351311 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCAGTATG
15351337 C
1 C
15351338 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCAGTATG
Found at i:15352044 original size:26 final size:26
Alignment explanation
Indices: 15352007--15352059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15351997 GGCTTAAACT
*
15352007 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
15352033 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15352059 C
1 C
15352060 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15352335 original size:158 final size:158
Alignment explanation
Indices: 15352032--15352319 Score: 350
Period size: 158 Copynumber: 1.8 Consensus size: 158
15352022 AACTCCGTAT
* * *
15352032 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAATGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCGCTCAG
* **
15352097 CCAGCCGGAGAGGTAGAATGCTCAAGCAAAGGATCGACCCGGTCCCCTCTGTGTGCTGTCAATCC
66 CCAGCCGGAGAGGTAGAATGCTCAAGCAAAGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCC
15352162 CACTGCCACAACCCTCGGTCTGGCTGGG
131 CACTGCCACAACCCTCGGTCTGGCTGGG
* ** *
15352190 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGATGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGG-CGCTCA
* * * * * ** *
15352254 GTCGGCCGGAGA-GTCAGAATG-TGCTAGGC-AGGGATCGGCTTGGTCCCCCCTGCATGCTGTCG
65 GCCAGCCGGAGAGGT-AGAATGCT-C-AAGCAAAGGATCGACCCGGTCCCCCCTGCATGCTGTCA
15352316 ATCC
127 ATCC
15352320 TGCTGCTGCA
Statistics
Matches: 108, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
157 5 0.05
158 100 0.93
159 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCGCTCAG
CCAGCCGGAGAGGTAGAATGCTCAAGCAAAGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCC
CACTGCCACAACCCTCGGTCTGGCTGGG
Found at i:15352730 original size:184 final size:183
Alignment explanation
Indices: 15352190--15352735 Score: 532
Period size: 184 Copynumber: 3.0 Consensus size: 183
15352180 TCTGGCTGGG
* *
15352190 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGCTCAG
* * * * * ** * ** *
15352255 TCGGCCGGAGA-GTCAGAATGTGCTAGGCAGGGATCGGCTTGGTCCCCCCTGCATGCTGTCGATC
66 TC-GCCGGAGAGGT-AGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTGTTGATC
* * *
15352319 CTGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACGCTGTAT
129 CTGCTGCGGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
* * * ** ** * * *
15352374 GCTTAGGC-TGGGGATGAACTTCGTACACCTAATTCAACCCACGAAACAAGCGTGCCGACGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGCTCA
* **
15352438 GTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC-AGCCC-AGTCCCCCCCTGTGTGCTACTG
65 GTCG-CCGGAGAGGTAGAATGCGCAAGTCGGGGATCGA-CCCGA-T-CCCCCCTGTGTGCTGTTG
* * *
15352501 ATCCTACTACCGGC-ACCCTCGGTCCGGT-TAGATCTT-GACTGGGAATGAACTCTGTAT
126 ATCCTGCT-GCGGCAACCCTCGGTTCGGTCT-GATCTTAGACTGGGAATGAACTCTGTAT
* ** * *
15352558 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATAAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGCTCAG
* * * * *
15352623 CCAGCTGGAAAGGTAGAATACGCAAGTCGGGGACCGACCCGATCCCCCCTGTGTGCTGTTGATCC
66 TC-GCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTGTTGATCC
* * *
15352688 TGCTGTC-GCAACCTTCGGTTTGGTCTGATCTTAGATTGGGAATGAACT
130 TGCTG-CGGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACT
15352736 TCGTATACCT
Statistics
Matches: 285, Mismatches: 61, Indels: 32
0.75 0.16 0.08
Matches are distributed among these distances:
182 2 0.01
183 43 0.15
184 194 0.68
185 43 0.15
186 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGATGCTCAG
TCGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTGTTGATCCT
GCTGCGGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:15353067 original size:26 final size:27
Alignment explanation
Indices: 15353038--15353092 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
15353028 ATTCGATCTT
15353038 AGACTGG-GAATGAACTCCGTATG-CTA
1 AGACTGGAG-ATGAACTCCGTATGCCTA
15353064 AGACTGGAGATGAACTCCGTATGCCTA
1 AGACTGGAGATGAACTCCGTATGCCTA
15353091 AG
1 AG
15353093 TCAACCCACG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (27 bp):
AGACTGGAGATGAACTCCGTATGCCTA
Found at i:15353393 original size:355 final size:356
Alignment explanation
Indices: 15352836--15353514 Score: 898
Period size: 355 Copynumber: 1.9 Consensus size: 356
15352826 CACTCTCTGT
* ** *
15352836 GCTGCCAGTCCTACTGCCACAACCTTCGGTCCGACTAGGGCTTATACATGGAATGAACTCCCCTA
1 GCTGCCAGTCCTACTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCCCTA
* *
15352901 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAAAGGTAGAATGCGCAA
66 TGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGACCGGAAAGGTAGAATGCGCAA
* * * * * *
15352966 GCTGGGGATCGGCTCGATCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTAGGTCCGATT
131 GCCGGGGATCAGCCCGATCCCCCCTACATGCTCTCGATCCTACTACCACAACCCTAGGTCCGATT
15353031 CGATCTTAGACTGGGAATGAACTCCGTATGCTAAGACTGGAGATGAACTCCGTATGCCTAAGTCA
196 CGATCTTAGACTGGGAATGAACTCCGTATGCTAAGACTGGAGATGAACTCCGTATGCCTAAGTCA
* * * ** * *
15353096 ACCCACGAAATGAGCGTACGTGCGCTCAGCCGGTCGGAGAGGCATAATGCGTAAGCCGAGGATCA
261 ACCCACGAAACGAGCATACGTACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGAGGATCA
15353161 GCCCGGTCCCGTTCTACGTGCTACCAATCCC
326 GCCCGGTCCCGTTCTACGTGCTACCAATCCC
* * * * *
15353192 GCTGCCAGTCCTGCTGCCACAACCCTCAATTCGCCTGGGGCTTAGACATGGAATGAACT-TCCTA
1 GCTGCCAGTCCTACTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCCCTA
*** *
15353256 TGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGGTTGGAGAGGTAGAATGCGCAA
66 TGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGACCGGAAAGGTAGAATGCGCAA
* * * * *** * *
15353321 GCCGGGGATCAGCCC-AGTCCCTCTTACGTGCTACT-GATCCTACTGCTTTAACCCTCGGTCTGA
131 GCCGGGGATCAGCCCGA-TCCCCCCTACATGCT-CTCGATCCTACTACCACAACCCTAGGTCCGA
* * *
15353384 -TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTGTGCCTAAG
194 TTC-GATCTTAGACTGGGAATGAACTCCGTATGCTAAGACTGGAGATGAACTCCGTATGCCTAAG
* ** * *
15353448 TCAACCCATGAAACGAGCATGGGTACGCTCAGCCGACCAGAGAGGCAGGATGCGTAAGCCGGGGA
258 TCAACCCACGAAACGAGCATACGTACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGAGGA
15353513 TC
323 TC
15353515 GAACGGGTGG
Statistics
Matches: 275, Mismatches: 45, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
354 3 0.01
355 220 0.80
356 52 0.19
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (356 bp):
GCTGCCAGTCCTACTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCCCTA
TGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGACCGGAAAGGTAGAATGCGCAA
GCCGGGGATCAGCCCGATCCCCCCTACATGCTCTCGATCCTACTACCACAACCCTAGGTCCGATT
CGATCTTAGACTGGGAATGAACTCCGTATGCTAAGACTGGAGATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCATACGTACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGAGGATCA
GCCCGGTCCCGTTCTACGTGCTACCAATCCC
Found at i:15354145 original size:26 final size:26
Alignment explanation
Indices: 15354101--15354153 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15354091 GGCTCAAACT
* *
15354101 CTTAGACTTGGAATCAACTCCATATG
1 CTTAGACATGAAATCAACTCCATATG
* *
15354127 CTTAGACATGAAATGAACTCCGTATG
1 CTTAGACATGAAATCAACTCCATATG
15354153 C
1 C
15354154 CTAGGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
CTTAGACATGAAATCAACTCCATATG
Found at i:15354474 original size:26 final size:26
Alignment explanation
Indices: 15354445--15354497 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15354435 CCAGTCCGAT
*
15354445 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
15354471 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15354497 C
1 C
15354498 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15354692 original size:26 final size:26
Alignment explanation
Indices: 15354654--15354706 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15354644 CCGGTCCGAT
15354654 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15354680 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15354706 C
1 C
15354707 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15355190 original size:26 final size:26
Alignment explanation
Indices: 15355154--15355206 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15355144 CCAGTCCAAT
*
15355154 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15355180 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15355206 C
1 C
15355207 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15355551 original size:26 final size:26
Alignment explanation
Indices: 15355522--15355574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15355512 CCGATCCGAT
*
15355522 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15355548 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15355574 C
1 C
15355575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15355748 original size:368 final size:370
Alignment explanation
Indices: 15354960--15355853 Score: 1011
Period size: 368 Copynumber: 2.4 Consensus size: 370
15354950 CTATGTGCTA
* * * *
15354960 CCGGTCCCGCTGCCACAACCTTC-GATTCGGCTGG-GTCTTAGACATGGAATGAACTCCCTATGC
1 CCGGTCCTGCTGCCACAACCCTCAG-TCCGACTGGAG-CTTAGACATGGAATGAACTCCCTATGC
* * * * * * *
15355023 CTAAGCCAACCCGCGAAACGGGCGTGCAGGTGCTCAGCCGGTTGGAGAGACAGAATGCGTAAGCC
64 CTAAGCCAACCCACGAAACAGACGTGCAGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTC
* * * * * **
15355088 AGGGATCAGCCCGG-CCCCTCCTGCATGCTGTCAATCCTACTGTCACAACCCTCGGTCCAGTCCA
129 GGGGATCGGTCCGGTCCCCACCTGCATGCTATCAATCCTACTACCACAACCCTCGGTCCAGTCCA
* *
15355152 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAAC
194 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
15355217 CCACGAAACGAGCGTGCGGGCAGTTCAGCCAACCAGAGAGTTCGGTCGGAGAGGCATAATGTGCA
259 CCACGAAACGAGCGTGCGGGCAGCTCAACCAACCAGAGAGTCCAGTCAGAGAGGCATAATGCGCA
* * * * *
15355282 TGTCGGGGATCAGCCTGATCCCCCTCTGTGTGCTGCGGATCCCGTTG
324 TGTCGGGAATCAACCCGATCCCCCTCTGCGTGCTGCGAATCCCGTTG
* * * * **
15355329 CCGGTGCTGCTGCCACAACCCTCGGTTCGATTGGAGCTTAGACAT-GAATGAACTCCCTATGCGG
1 CCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCCT
* * * **
15355393 AAGCCAACCCACGAAACAGACATGCAGGTGCTCAACCGATCGGAGAGGCAGAATACACAAGTCGG
66 AAGCCAACCCACGAAACAGACGTGCAGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGG
* ** * * * * *
15355458 GGATCGGTCCGGTCCCC-CCTGCGTGCTATTGATCCTGCTACCGCAACCTTTGGTCC-GATCCGA
131 GGATCGGTCCGGTCCCCACCTGCATGCTATCAATCCTACTACCACAACCCTCGGTCCAG-TCCAA
*
15355521 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
195 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * * *
15355586 CACGAAATGAGCGTGCGGG-TGCTCAACCGATCGGAGA-TGCCAGTCAGAGAGGCATAATGCGCA
260 CACGAAACGAGCGTGCGGGCAGCTCAACCAACCAGAGAGT-CCAGTCAGAGAGGCATAATGCGCA
* *
15355649 TGTCGGGAATCAACCCGATCCCTCTCTGCGTGCTGTC-AATCTCGTTG
324 TGTCGGGAATCAACCCGATCCCCCTCTGCGTGCTG-CGAATCCCGTTG
* * * * *
15355696 TCGGTCCTGCCT-CTACAACCCTTAGTCCGACTGGTGCTTAGACATGGAATGAACTCCGTATGCC
1 CCGGTCCTG-CTGCCACAACCCTCAGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCC
* * * * *
15355760 TATGCCAACCCAC-AAA-ATGAGCGTACAGGCGCTCAGTCGATCGGAGAGGTAGAATGCGTAAGT
65 TAAGCCAACCCACGAAACA-GA-CGTGCAGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGT
*
15355823 CGGGGATCGGTCCGATCCCCACCTGCATGCT
128 CGGGGATCGGTCCGGTCCCCACCTGCATGCT
15355854 GCCGATCCTG
Statistics
Matches: 437, Mismatches: 77, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
366 2 0.00
367 110 0.25
368 274 0.63
369 49 0.11
370 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (370 bp):
CCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCCT
AAGCCAACCCACGAAACAGACGTGCAGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGG
GGATCGGTCCGGTCCCCACCTGCATGCTATCAATCCTACTACCACAACCCTCGGTCCAGTCCAAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCAGCTCAACCAACCAGAGAGTCCAGTCAGAGAGGCATAATGCGCATG
TCGGGAATCAACCCGATCCCCCTCTGCGTGCTGCGAATCCCGTTG
Found at i:15356388 original size:26 final size:26
Alignment explanation
Indices: 15356359--15356411 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15356349 CCGATCTGAT
15356359 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
15356385 CTTAGACTGATGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
15356411 C
1 C
15356412 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:15357109 original size:26 final size:26
Alignment explanation
Indices: 15357071--15357123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15357061 GCCTCAACAT
15357071 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15357097 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15357123 C
1 C
15357124 CTAACGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15357452 original size:159 final size:159
Alignment explanation
Indices: 15357096--15357591 Score: 486
Period size: 159 Copynumber: 3.1 Consensus size: 159
15357086 AACTCCATAT
* * * * *
15357096 GCTTAGACATGGAATGAACTCCGTATGCCTAACGC-AACCTACGGAACGAGCGTACGGGCGCTCA
1 GCTTAGACACGGAATGAACTCCGTATGCCTAA-GCTAACCCACGAAACGAGCGTGCGGGAGCTCA
* * * ** *
15357160 ACCGGCC-AGAGAGGTAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCC-CTGTGTGTTGTCGA
65 GCCGACCGA-AGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCTCTGCATGCTGTCGA
* * *
15357223 TCCTGCTGCCACAACCCTTGGTCCGATCTGA
129 TCCCGCTCCCACAACCCTCGGTCCGATCTGA
* *** * * * *
15357254 TCTTAGATTGGGAATGAACTCCGTATGCATAAG-TCAACCCACGAAACAAGCGTGCGGGTGCTGA
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGAGCTCA
* * * * *
15357318 GCCGACCGAAGAGGCATAATGCGCAAACTGAGGATTGGCCCGATCCCCCTCTGCATGCTGTCGGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCTCTGCATGCTGTCGAT
* *
15357383 CCCGCTCCCACAACCCTCGGTCTGA-CTGGG
130 CCCGCTCCCACAACCCTCGGTCCGATCT-GA
* * * *
15357413 GCTTAGACACAGAATGAACTCCCTATGCCTAAGCTAACCCAAGAAACGGGCGTGCGGGAGCTCAG
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * ** *
15357478 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGGT-CCCC-CTGCGGGCTATCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCTCTGCATGCTGTCGATC
** * *
15357541 TTGCTGCCACAACCCTCGGTCCGGTCTGA
131 CCGCTCCCACAACCCTCGGTCCGATCTGA
* *
15357570 TCATAGACTA-GGAATGAACTCC
1 GCTTAGAC-ACGGAATGAACTCC
15357592 ATTTGCTTAG
Statistics
Matches: 271, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 50 0.18
158 99 0.37
159 121 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACACGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCTCTGCATGCTGTCGATC
CCGCTCCCACAACCCTCGGTCCGATCTGA
Found at i:15358322 original size:26 final size:26
Alignment explanation
Indices: 15358293--15358345 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15358283 CTGGTTTGAT
*
15358293 CTTAGAC-TGAGAATGAACTCTGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
15358319 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15358345 C
1 C
15358346 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15358340 original size:355 final size:354
Alignment explanation
Indices: 15357860--15358529 Score: 912
Period size: 355 Copynumber: 1.9 Consensus size: 354
15357850 TGCGTAAGCT
* * * * * *
15357860 GGGGATCGACCTGGTCCCCCCTACGTGTTGTTGATCCTGCTGCTAGTCCTACTGCTACAACCCTC
1 GGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTAGTCCTACTGCCACAACCCCC
* *
15357925 AGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATAAACTCCGTATG
66 AGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATAAACTCCGTATG
* * * ** * * *
15357990 CCTAAGCCAAGCAATGAAACGAGCGTGTGGGTGCTCAGCCGACT-GGAGAGGTAGAATGCGCAAG
131 CCTAAGCCAAACAACGAAACGAGCGTGCGGGCACTCAACCG-CTCGGAGAGGTAAAATACGCAAG
** * * *
15358054 CCGAGGACTGGGTCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCACAACCCTCAA-TCTGGTC
195 CCGAGGACTGGCCCGGTCCCACCTACGTACTATCGATCCTGCAGCCACAACCCTCAATTC-GGTC
** * *
15358118 TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCT
259 TGATCTTAGACTCAGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATGCGAGCGCT
15358183 CAGTCGACCGAAAAGGTAGATTGCGCAATCC
324 CAGTCGACCGAAAAGGTAGATTGCGCAATCC
* * * ** *
15358214 GGGGATCGACCCGATCCTTCCCTACGTGCTGTCGATCCTGCTGTTGGTCCTGTTGCCGCAACCCC
1 GGGGATCGACCCGATCC-CCCCTACGTGCTGTCGATCCTGCTGCTAGTCCTACTGCCACAACCCC
* * * *
15358279 CGGTCTGGTTTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTAT
65 CAGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATAAACTCCGTAT
* * *
15358344 GCCTAAGCCAAACCACGAAACGAGCGTGCGGGCACTCAACCGGTCGGATAGGTAAAATACGCAAG
130 GCCTAAGCCAAACAACGAAACGAGCGTGCGGGCACTCAACCGCTCGGAGAGGTAAAATACGCAAG
* * * * *
15358409 TCGAGGACTGGCCCGGTCCCACCTACGTACTGTCGATCCTGCAGCCGCAACCCTCAGTTCGGTTT
195 CCGAGGACTGGCCCGGTCCCACCTACGTACTATCGATCCTGCAGCCACAACCCTCAATTCGGTCT
15358474 GATCTTAGACTCAGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATG
260 GATCTTAGACTCAGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATG
15358530 TGGGCCCTGA
Statistics
Matches: 270, Mismatches: 43, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
354 16 0.06
355 252 0.93
356 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (354 bp):
GGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTAGTCCTACTGCCACAACCCCC
AGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATAAACTCCGTATG
CCTAAGCCAAACAACGAAACGAGCGTGCGGGCACTCAACCGCTCGGAGAGGTAAAATACGCAAGC
CGAGGACTGGCCCGGTCCCACCTACGTACTATCGATCCTGCAGCCACAACCCTCAATTCGGTCTG
ATCTTAGACTCAGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATGCGAGCGCTCA
GTCGACCGAAAAGGTAGATTGCGCAATCC
Found at i:15358832 original size:26 final size:26
Alignment explanation
Indices: 15358794--15358871 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
15358784 CTAATCCGAT
* *
15358794 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15358820 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15358846 CTTAGACTAGGG-ATG-ACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15358871 C
1 C
15358872 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
25 10 0.21
26 35 0.73
27 3 0.06
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15359559 original size:26 final size:26
Alignment explanation
Indices: 15359523--15359575 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15359513 CTGATCCGAT
15359523 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* * *
15359549 CTTAGATTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15359575 C
1 C
15359576 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15359941 original size:26 final size:26
Alignment explanation
Indices: 15359903--15359955 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15359893 CCTATCCGAT
15359903 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
15359929 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
15359955 C
1 C
15359956 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15360276 original size:159 final size:158
Alignment explanation
Indices: 15359928--15360430 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 158
15359918 AACTCTGTAT
* * * * *
15359928 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* * * * * *
15359993 CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCCTACGTACTGTCGATCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGAGTCCCCCCTACGTACTATCGATCC
* * *
15360058 TGCTGCCAGAACCCTCGGTCCGATCTGA
131 CGCTGCCACAACCCTCGGTCCGAGCTGA
* *
15360086 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * * * *
15360149 AGCCGGCCGGAGGGGCATAATGCGTAAGCCGGGGATCGACTCGA-TCCCCCTCTGCTTGCTATCG
65 A-CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CGAGTCCCCC-CTACGTACTATCG
* *
15360213 GTCCCGCTGCCACAACCCTCGGTCCG-GCTGGG
127 ATCCCGCTGCCACAACCCTCGGTCCGAGCT-GA
* * * * *
15360245 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* ** * * * * * * *
15360310 TCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATTGGCCCG-GTCCCCCCTGCGTCCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA-TCGACCGAGTCCCCCCTACGTACTATCGATC
** * * **
15360374 CTACTGCCACAACCCTTGGTCTG-GTCCAA
130 CCGCTGCCACAACCCTCGGTCCGAG-CTGA
*
15360403 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15360431 TTAGACTCGG
Statistics
Matches: 280, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 148 0.53
159 122 0.44
160 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGAGTCCCCCCTACGTACTATCGATCC
CGCTGCCACAACCCTCGGTCCGAGCTGA
Found at i:15360445 original size:26 final size:26
Alignment explanation
Indices: 15360404--15360456 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15360394 CTGGTCCAAT
15360404 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15360430 CTTAGACTCGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15360456 C
1 C
15360457 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15367057 original size:26 final size:26
Alignment explanation
Indices: 15367019--15367071 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15367009 GGCTCAAAAT
*
15367019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
15367045 CTTAGACAT-GGAAGGAACTCTGTATG
1 CTTAGAC-TGGGAAGGAACTCCGTATG
15367071 C
1 C
15367072 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:15368413 original size:26 final size:26
Alignment explanation
Indices: 15368375--15368427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15368365 CTGGTCTGAT
15368375 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
*
15368401 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15368427 C
1 C
15368428 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15370005 original size:159 final size:156
Alignment explanation
Indices: 15369651--15370152 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 156
15369641 AAGTCCATAT
* * * *
15369651 GCTTACACATAGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
15369716 TCAGCCGGAGAGGCAAAATGCGTAAGTCGGGGATCGGTCCGACCCCCTTGCATGCTGTAGGTCTT
66 CCAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGACCCCCTTGCATGCTGTAGGTCCT
* * *
15369781 GCTACCGTAACCCTCGGTCTGGTTCGA
131 GCTACCG-AACCCTCGGTCCGGCTAGA
* * * * * *
15369808 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
15369872 GCCAACCGAAGAGGCATATTGCGCAAGCCAGGGATCGGCCCGGTCCCCTTCTGCGTGCTGTCGGT
65 GCCAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCC-GACCCCCT-TGCATGCTGTAGGT
*
15369937 CCCACTGCTA-C-AACCCTCGGTCCGGCTAGG
128 --C-CTGCTACCGAACCCTCGGTCCGGCTAGA
* * * *
15369967 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
15370032 CCGACCGGAGAGGCAGAATGCGTAAGTCAAGGATCGACCCGATATCCCC-TGCGTGCTGTCGATC
66 CCAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCG--ACCCCCTTGCATGCTGTAGGTC
* *
15370096 CTGCTACCGCAACCCTCAGTCC-GATATGA
129 CTGCTACCG-AACCCTCGGTCCGGCTA-GA
* * *
15370125 TCTTAGGC-TGGCAATGAACTCCATATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
15370153 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 54, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
155 6 0.02
156 3 0.01
157 91 0.33
158 54 0.19
159 112 0.40
160 4 0.01
161 2 0.01
162 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGACCCCCTTGCATGCTGTAGGTCCT
GCTACCGAACCCTCGGTCCGGCTAGA
Found at i:15370161 original size:26 final size:26
Alignment explanation
Indices: 15370126--15370178 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15370116 CCGATATGAT
*
15370126 CTTAGGCTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
** *
15370152 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
15370178 C
1 C
15370179 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Done.