Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 96 of 138
Found at i:15370479 original size:171 final size:171
Alignment explanation
Indices: 15370151--15370520 Score: 408
Period size: 171 Copynumber: 2.2 Consensus size: 171
15370141 AACTCCATAT
* * *
15370151 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCAAAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCAAAG
* * * ** * *
15370216 CCGATCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCCATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCCATC
* * *
15370281 CTGCTACCGGCCTTGCTGCCACAACCCTC-AGTTCGG-CTGGA
131 CTGCTACCGGCCTCGCTACCACAACCCTCGA-TCCGGTCT-GA
* * * **
15370322 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGTAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCAAA
* * * *
15370386 GCCGGCCAGAGAGGCAGAATGCACAAGCCAAGGATC-GACCCGGTCTCCCC-CTGTGTGCTGTCG
65 GCCGACCAGAGAGGCAGAATGCACAAGCCAAGGATCAG-CCCAGTC-CCCCTCTGCGTGCTGTCC
* * * **
15370449 ATCCTGCTGCTGGTCTCGCTACTGCAACCCTCGATCCGGTCTGA
128 ATCCTGCTACCGGCCTCGCTACCACAACCCTCGATCCGGTCTGA
*
15370493 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
15370521 TTAGACATGG
Statistics
Matches: 164, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
170 2 0.01
171 154 0.94
172 8 0.05
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCAAAG
CCGACCAGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCCATC
CTGCTACCGGCCTCGCTACCACAACCCTCGATCCGGTCTGA
Found at i:15370523 original size:26 final size:26
Alignment explanation
Indices: 15370494--15370546 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15370484 CCGGTCTGAT
15370494 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15370520 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15370546 C
1 C
15370547 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15370815 original size:159 final size:159
Alignment explanation
Indices: 15370519--15370947 Score: 385
Period size: 159 Copynumber: 2.7 Consensus size: 159
15370509 AACTCCGTAT
** * * * *
15370519 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCACTCAG
* * * * * * ** * * ** * * **
15370584 CCGATCGGAGAGGTAGAATGCGTAAGTCGGGGATCGCCCCAATGCCCCC-CAACATGTTGTCGAT
66 CCGACCGAAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGAT-CCCCCTCTGCGTGCTACCGAT
* * *
15370648 CCTGCTGCCGCAACCCTCGGTCCAGTCCGA
130 CCCGCTGCCACAACCCTCGATCCAGTCCGA
* * ** * * * *
15370678 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAATCCACGAAATGAGCGCGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCACTCA
* * * * *
15370742 GCTGATCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGAT
65 GCCGACCGAAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCTCTGCGTGCTACCGAT
* ** ** *
15370807 CCCGCTGCCACAACCCTTGATCTGGTTGGG
130 CCCGCTGCCACAACCCTCGATCCAGTCCGA
* * *
15370837 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCACTCAG
* *
15370902 CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCC
66 CCGACCGAAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCC
15370948 TCCTACGTGC
Statistics
Matches: 212, Mismatches: 55, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
158 6 0.03
159 205 0.97
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCACTCAG
CCGACCGAAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCTCTGCGTGCTACCGATC
CCGCTGCCACAACCCTCGATCCAGTCCGA
Found at i:15370906 original size:870 final size:865
Alignment explanation
Indices: 15367596--15371100 Score: 3104
Period size: 870 Copynumber: 4.0 Consensus size: 865
15367586 GATCGGAGAG
* * * ** * * *
15367596 GCCGACCGGAGAGGCATAATGGGCAAGCCGGGGATCAGCCTGGTCCTCTTATGCGTGCTGTCGAT
1 GCCG-CCGGAGAGGCATAATGCGTAAG-CGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGAT
* * * ** * * * * *
15367661 CCCGTTGCCAATCCTACTACCACAACCCTC-GGTCCGATTGGGGCTTAGACATGGAAGGAACTCC
64 CCTGCTACC-GGCCTGCTACCACAACCCTCAGTTCAG-CTGGGGCTTAGACATGGAATGAACTCC
* * * * * * * *
15367725 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCAGTCGGAGAGGTAGAATGCG
127 GTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCA
* * * * * * * *
15367790 CAAGCCAGGGATCGGCTCTGTC-CCCCTTACGTGCTGCCGATCCTGCTACTGGTCCTGCTACTAC
192 CAAGCCAAGGATCGACCCGGTCTCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACTGC
* * * *
15367854 AACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATTGAATGAACT
257 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * *
15367918 CCGTATGCCTCAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCAGTCCGGAGAGGCAAAAT
322 CCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGT-CGGAGAGGCAAAAT
** * * * * * * * *
15367983 ATGCAAGCCGGGGATCGACCGGGTCCCCCTTGCATGTTATCGATCTTGTTACTGCAACCCTCGGT
386 GCGTAAGCCGGGGATCGCCCCGATCCCCCCTGCATGTTGTCGATCTTGCTACCGCAACCCTCGGT
* * * * *
15368048 CCAGTCTGATCTTAGACTGGGAATTAACTTCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCG
451 CCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
* * * * * *** * * *
15368113 GGCATTGAG-TCGGCTGGAGAGGCATAATGCGCAAGTTGGGGATTGGCCTGGTCCCCCTC-GACA
516 GGCACTGAGCT-GACCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTG-CG
* *
15368176 TGCTGCCGATCCTGCTGCCACAACACTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
579 TGCTGCCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * * * * *
15368241 TTCCTAAGCCGACCCACGAAAAGGGCATACGGGCACTCAACCGGCCGAAGAGGCAGAATTCACAA
644 TGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAA
* * * * * * * *
15368306 GCCAGGGATCGGCCCGGTCCCCCCTATGTGCTACCGATCCTGTTGTCGAAACCCTCAGTCTGGTC
709 GCCAAGGATCGACCCGGT-CCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCCGATC
* *
15368371 TGATCTTAGACTAGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
773 TGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * *
15368436 ACCCACAAAATGAGAGTGCGGGCGCTCA
838 ACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** * *
15368464 GCCGGCTGCAGATGCATAATCCGTAAGCCGAGGATCAGTCTGGTCACCCTCTGTGTGCTGTCGAT
1 GCC-GCCGGAGAGGCATAATGCGTAAG-CGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGAT
* * * *
15368529 CCCGCTACCGATCCTGCTACCACAACCCTCAG-TCTAGCTGGGGCTGAGACATGGAATGAACTCT
64 CCTGCTACCG-GCCTGCTACCACAACCCTCAGTTC-AGCTGGGGCTTAGACATGGAATGAACTCC
* * * * * ** * * * * * *
15368593 GTATACCGAAGCCAACCCATGAAAAGAGTGTACGGGTGCTCAGCCTGTCAAAGAGGAAAAATACA
127 GTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCA
* * *
15368658 TAAGCCAAGGATC-AGCCCGG--TCCCCCTGCATGCTGTCGATCCTGCTACTGGTCCTGCTACCG
192 CAAGCCAAGGATCGA-CCCGGTCTCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACTG
* * * * * *
15368720 TAACCCTTGGTCCGGTCTGATCTTAGGCTGGGAATGAACTCTGTATGCTTAGACATGGAATAAAC
256 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * * * *
15368785 TCCGTATGCCAAAGCCAACCCATGAAACGAA-CGTGCGGGTGCTCA-ACTGACTGGAGAGGCAGA
321 TCCGTATGCCTAAGCCAACCCATGAAAC-AAGCGTGCGGGCGCTCAGCCAGTC-GGAGAGGCAAA
* * ** * *
15368848 ATGCGTAAGCCGAGGACCAG-CATGGTCCCCTCT--ATGTGCTGTCGATCTTGCTACCGCAACCC
384 ATGCGTAAGCCGGGGATC-GCCCCGATCCCCCCTGCATGT--TGTCGATCTTGCTACCGCAACCC
*** * * ** * *
15368910 TCGGTTTGGTTCGATCTTAGATTGGGAATGAACTATGTATGCCTAAGTCAACCCACAAAATGAGT
446 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
* * * * * **
15368975 GTGCGGGCATTGA-ATCGACCGAAAAGGCATACTGCGCAAGCCAGGAATCGACCCGGTCCTACTC
511 GTGCGGGCACTGAGCT-GACCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTC
* ** ** *
15369039 TGTGTGCTGCC-AGTCCCGCTGCCGTAACCCTC-AGTTTGACTGTGGCTTAGACATGGAATGAAC
575 TGCGTGCTGCCGA-TCCCGCTGCCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGAAC
* * * * * ** * ** *
15369102 TCACTGTGCCTAAACAAACCCACGAAACGGGCGTGCGGGTGCTC-GTCGGTCGGAGAGGCAGAAT
638 TCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGACCGAAGAGGCAGAAT
* * * * * *
15369166 GCGCAAGTCAAGGATCGGCCCGGT-CCCCTGCGTGCTACCTATCCTGCTGCCCCTACCCTC-GAT
703 GCGCAAGCCAAGGATCGACCCGGTCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCAG-T
* * * *
15369229 -CTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGGATGAACTTCGTATGCC
767 CCGA-TCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCC
*
15369293 TAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCA
831 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
15369328 GCTGGCCGGAGAGGCATAATGCGCAAGCCAGGAATCAGCCCAGTCCCTCTTTGCGTGCTGTCGAT
1 GC-CGCCGGAGAGGCATAATGCGTAAGCGAGG-ATCAGCCCAGTCCCCCTCTGCGTGCTGTCGAT
15369393 CCTGCTACCGGTCCTGCTACCACAACCCTCAGTTCA---GGGGCTTAGACATGGAATGAACTCCG
64 CCTGCTACCGG-CCTGCTACCACAACCCTCAGTTCAGCTGGGGCTTAGACATGGAATGAACTCCG
* * * ** ** ** *
15369455 TATACC--AG-C-ACCCATCGCACATGA-TGTGCGCACAC-CCCCCGGCCCCCA-ATGTC-GAAA
128 TATACCTAAGCCAACCCA-CG-AAACGAGCGTGCGGGCACTCAGCCGG-CCAGAGA-GGCAG-AA
* ** * * * ** * * ****
15369512 CT-C-CTAATGCCGCCAGTTAGGCTCTTCGACGATGCTTCGGC-GATAGTGCTCTGGGCGAAAAA
188 -TGCAC-AA----GCCA---AGGATCGAC-CCGGT-CTCCCCCTG--CGTG--CT-GTCGATCCT
** * * **
15369574 AATAC-GG-CACTAGC-ACATGCCCGAGCCC-AGCATGTGCACCGTGGCTCAAAATCTTAGACTG
237 GCTACTGGTC-CT-GCTAC-TG--C-AACCCTCG-A--T---CC--GG-TC-TGATCTTAGACTG
* * * * * *
15369635 GGAATGAAGTCCATATGCTTACACATAGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGA
286 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAA
* * * ** *
15369700 GCGTGCGGGCGCTCAGTCAGCCGGAGAGGCAAAATGCGTAAGTCGGGGATCGGTCCGA-CCCCCT
351 GCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGCCCCGATCCCCCC
* * * * ** *
15369764 TGCATGCTGTAGGTCTTGCTACCGTAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTC
416 TGCATGTTGTCGATCTTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC
* * * * ** * *
15369829 CGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGCCAACCGAAGAGGCATATTGC
481 CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCTGACCGAAAAGGCATAATGC
* * * * * *
15369894 GCAAGCCAGGGATCGGCCCGGTCCCCTTCTGCGTGCTGTCGGTCCCACTGCTACAACCCTCGGTC
546 GCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGATC
* * * *
15369959 CGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCATGCGG
611 CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGG
** * * * * * *
15370024 GTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGTCAAGGATCGACCCGATATCCCCTGCGTGCT
676 GCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGT-CCCCCTACGTGCT
** * * *
15370089 GTCGATCCTGCTACCGCAACCCTCAGTCCGATATGATCTTAGGCT-GGCAATGAACTCCATATGC
740 ACCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTAGG-AATGAACTCCATATGC
* **
15370153 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCAAA
804 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
15370215 GCCGATCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCCAT
1 GCCG-CCGGAGAGGCATAATGCGTAAG-CGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGAT
* * * *
15370280 CCTGCTACCGGCCTTGCTGCCACAACCCTCAGTTCGGCTGGAGCTTAGACATGGAATGAACTTCG
64 CCTGCTACCGGCC-TGCTACCACAACCCTCAGTTCAGCTGGGGCTTAGACATGGAATGAACTCCG
* * **
15370345 TATGCCTAAGCCAACCCACGTAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCAC
128 TATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCAC
* *
15370410 AAGCCAAGGATCGACCCGGTCTCCCCCTGTGTGCTGTCGATCCTGCTGCTGGT-CTCGCTACTGC
193 AAGCCAAGGATCGACCCGGTCTCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCT-GCTACTGC
15370474 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
257 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * * *
15370539 CTGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCAGCC-GATCGGAGAGGTAGAAT
322 CCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAG-TCGGAGAGGCAAAAT
* * ** * *
15370603 GCGTAAGTCGGGGATCGCCCCAATGCCCCCCAACATGTTGTCGATCCTGCTGCCGCAACCCTCGG
386 GCGTAAGCCGGGGATCGCCCCGAT-CCCCCCTGCATGTTGTCGATCTTGCTACCGCAACCCTCGG
* * *
15370668 TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAATCCACGAAATGAGCGCGC
450 TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
* * *
15370733 GGGCGCTGAGCTGATCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGT
515 GGGCACTGAGCTGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGT
* * * **
15370798 GCTACCGATCCCGCTGCCACAACCCTTGATCTGGTTGGGGCTTAGACATGGAATGAACTCCCTAT
580 GCTGCCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* *
15370863 GCCTAAGCCAGCCCACGAAACGGGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAG
645 GCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAG
** * ** ** ** *
15370928 CCAAGGATCGACCCGGTCCCTCCTACGTGCTGTCAATCCTGCTGCTACAACCCTTGGTTTGGT-T
710 CCAAGGATCGACCCGGTCCC-CCTACGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCCGATCT
* *
15370992 CGATCTTAGACTCA-GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
774 -GATCTTAGACT-AGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* * * *
15371056 AACCCACAAAATGAGTGTGCGGGTGCTCA
837 AACCCACGAAACGAGCGTGCGGGCGCTCA
* *
15371085 GTCGACCAGAGAGGCA
1 GCCG-CCGGAGAGGCA
15371101 GGATGCGCAA
Statistics
Matches: 2102, Mismatches: 431, Indels: 206
0.77 0.16 0.08
Matches are distributed among these distances:
857 10 0.00
858 16 0.01
859 7 0.00
861 30 0.01
862 4 0.00
863 5 0.00
864 190 0.09
865 12 0.01
866 41 0.02
867 281 0.13
868 370 0.18
869 12 0.01
870 400 0.19
871 2 0.00
872 10 0.00
873 10 0.00
875 2 0.00
876 4 0.00
877 5 0.00
878 3 0.00
880 12 0.01
881 8 0.00
883 5 0.00
884 225 0.11
885 146 0.07
886 17 0.01
887 197 0.09
888 7 0.00
889 4 0.00
890 29 0.01
892 6 0.00
893 19 0.01
894 13 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (865 bp):
GCCGCCGGAGAGGCATAATGCGTAAGCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGATCC
TGCTACCGGCCTGCTACCACAACCCTCAGTTCAGCTGGGGCTTAGACATGGAATGAACTCCGTAT
ACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCACAAG
CCAAGGATCGACCCGGTCTCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACTGCAACC
CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGT
ATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAAAATGCGTA
AGCCGGGGATCGCCCCGATCCCCCCTGCATGTTGTCGATCTTGCTACCGCAACCCTCGGTCCAGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCAC
TGAGCTGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCC
GATCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAAGG
ATCGACCCGGTCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTA
GACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCA
Found at i:15371025 original size:26 final size:26
Alignment explanation
Indices: 15370996--15371048 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15370986 TTGGTTCGAT
*
15370996 CTTAGACTCAGAATGAACTTCGTATG
1 CTTAGACTCAGAATGAACTCCGTATG
** *
15371022 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCAGAATGAACTCCGTATG
15371048 C
1 C
15371049 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTCAGAATGAACTCCGTATG
Found at i:15372557 original size:171 final size:171
Alignment explanation
Indices: 15372253--15372576 Score: 371
Period size: 171 Copynumber: 1.9 Consensus size: 171
15372243 TAAACTGGGG
** * * ** *
15372253 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGTGCTCAGCCAGTCGGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGCACAGGCACTCAACCAGTCGGAGAGG
* * * *
15372318 CATAATGTATAAGTCGGGGATCAGCCCGGTCCCCCTTTACATGCTGTCAATCCCACTGCCGATCC
66 CAGAATGTACAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTGTCAATCCCACTGCCGATCC
* *
15372383 TGCTGCCACAATCCTCGATCCGACTGGGGCTTAGACATGGA
131 TGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGA
* * *
15372424 ATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGCACTGGCACTCAACCGGTCGGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGCACAGGCACTCAACCAGTCGGAGAGG
* * * * * * * ** ** *
15372489 TAGAATGTGCAAGCCGGGGATCGGCCTGGTCCCACC-CTGCGTGCTGTCGATCCTGCTGTTGGTC
66 CAGAATGTACAAGCCGGGGATCAGCCCGGTCCC-CCTCTACATGCTGTCAATCCCACTGCCGATC
*
15372553 CTGCTACCGCAACCCTCGATCCGA
130 CTGCTACCACAACCCTCGATCCGA
15372577 TCCGATCTTA
Statistics
Matches: 123, Mismatches: 29, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
171 121 0.98
172 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (171 bp):
ATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGCACAGGCACTCAACCAGTCGGAGAGG
CAGAATGTACAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTGTCAATCCCACTGCCGATCC
TGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGA
Found at i:15372933 original size:159 final size:158
Alignment explanation
Indices: 15372743--15373105 Score: 410
Period size: 159 Copynumber: 2.3 Consensus size: 158
15372733 GTCAATCTTG
* * * *
15372743 CTACCACAACCCTCAGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAC
1 CTACCACAACCCTCGGTCCGGTCTGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
15372807 CCATGAAATGAGCGTGCAGGCGCTGAGCTGATCGGAGAGGCAGAATGTACCAGCCGAGGATCGAC
65 CCACGAAAAGAGCCTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGTACAAGCCGAGGATCGAC
15372872 CCGATCCCCCTCTGCGTGCTGTCAG-TCCCA
130 CCGAT-CCCCTCTGCGTGCTGT-AGATCCCA
*
15372902 CTACCACAACCCTCGGTCCGG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 CTACCACAACCCTCGGTCCGGTCT-GAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * **
15372966 CCACGAAAAGGGCCTGCGGGGGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGT
65 CCACGAAAAGAGCCTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGTACAAGCCGAGGATCGAC
* *
15373031 CCGATCCCCTCTGCGTGCTGTGGATCCTA
130 CCGATCCCCTCTGCGTGCTGTAGATCCCA
* * * * *
15373060 CTGCCACAACCTTCGGTCTGGTCTGATCTTAAAC-TAGGAATGAACT
1 CTACCACAACCCTCGGTCCGGTCTGAGCTTAGACAT-GGAATGAACT
15373106 TCATATGCTT
Statistics
Matches: 171, Mismatches: 28, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
157 2 0.01
158 57 0.33
159 111 0.65
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTACCACAACCCTCGGTCCGGTCTGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAAAGAGCCTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGTACAAGCCGAGGATCGACC
CGATCCCCTCTGCGTGCTGTAGATCCCA
Found at i:15374031 original size:26 final size:25
Alignment explanation
Indices: 15373995--15374073 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
15373985 CCGATCCAAT
15373995 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
*
15374021 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
15374047 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
15374073 C
1 C
15374074 CTAAGTCAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:15374760 original size:196 final size:196
Alignment explanation
Indices: 15374417--15374911 Score: 715
Period size: 196 Copynumber: 2.5 Consensus size: 196
15374407 TCCTGTTGTC
* * * * * *
15374417 GCAACCCTCGGTCCGATCTGATCTTAGACTGAGAATGAACTTCGTATGCTTAGATTGGGGATGAA
1 GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGT-GGAATGAA
* * ** * * *
15374482 CTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCAGGTCGGAGAGGCAGAA
65 CTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACAGGTCAGAGAGGCAGAA
*
15374547 TACACAAGCCGGGGATCGACTCGGTCCCCCCT-GCGTGCTGCCGATCCTACTGCTTGTCCTGCTG
130 TACACAAGCCAGGGATCGACTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGCTG
15374611 CT
195 CT
*
15374613 GCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGATGGAATGAA
1 GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAG-TGGAATGAA
*
15374678 CTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACTGGTCAGAGAGGCAGAA
65 CTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACAGGTCAGAGAGGCAGAA
* * * *
15374743 TGCGCAAGCTAGGGATCGGCTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGCTG
130 TACACAAGCCAGGGATCGACTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGCTG
15374808 CT
195 CT
* *
15374810 GCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGATGTGGAATGAA
1 GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-GTGGAATGAA
* * *
15374875 CTCTGTGTGCCTAAGCCAACCCATGAAACGAA-CGTGC
65 CTCCGTATGCCTAAGCCAACCCACGAAAC-AAGCGTGC
15374912 AGGCCTTCAG
Statistics
Matches: 269, Mismatches: 26, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
196 140 0.52
197 126 0.47
198 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGTGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACAGGTCAGAGAGGCAGAAT
ACACAAGCCAGGGATCGACTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGCTGC
T
Found at i:15374870 original size:26 final size:26
Alignment explanation
Indices: 15374832--15374884 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15374822 TCGGTCTGAT
15374832 CTTAGACTGGGAATGAACTCCGTGTG
1 CTTAGACTGGGAATGAACTCCGTGTG
*
15374858 CTTAGA-TGTGGAATGAACTCTGTGTG
1 CTTAGACTG-GGAATGAACTCCGTGTG
15374884 C
1 C
15374885 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTGTG
Found at i:15374972 original size:197 final size:196
Alignment explanation
Indices: 15374417--15374956 Score: 723
Period size: 197 Copynumber: 2.7 Consensus size: 196
15374407 TCCTGTTGTC
* * * * *
15374417 GCAACCCTCGGTCCGATCTGATCTTAGACTGAGAATGAACTTCGTATGCTTAGAT-TGGGGATGA
1 GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATGT-GGAATGA
* * * *
15374481 ACT-TCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCAGGTCGGAGAGGCAG
65 ACTCT-GTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGCAGGTCGGAGAGGCAG
*
15374545 AATACACAAGCCGGGGATCGACTCGGTCCCCCCT-GCGTGCTGCCGATCCTACTGCTTGTCCTGC
129 AATGCACAAG-CGGGGATCGACTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGC
15374609 TGCT
193 TGCT
*
15374613 GCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-GATGGAATGA
1 GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATG-TGGAATGA
* * * *
15374677 ACTCCGTATGCCTAAGCCAACCCACGAAAC-AAGCGTGCGGGCACTCAACTGGTCAGAGAGGCAG
65 ACTCTGTATGCCTAAGCCAACCCACGAAACGAA-CGTGCGGGCACTCAGCAGGTCGGAGAGGCAG
* * *
15374741 AATGCGCAAGCTAGGGATCGGCTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGC
129 AATGCACAAGC-GGGGATCGACTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGC
15374806 TGCT
193 TGCT
* *
15374810 GCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGATGTGGAATGAA
1 GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATGTGGAATGAA
* * * * * * *
15374875 CTCTGTGTGCCTAAGCCAACCCATGAAACGAACGTGCAGGC-CTTCAGCCGGTTGGTGAGTCAGA
66 CTCTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCAC-TCAGCAGGTCGGAGAGGCAGA
15374939 ATGCACAAGTCGGGGATC
130 ATGCACAAG-CGGGGATC
15374957 AATTTGATCC
Statistics
Matches: 301, Mismatches: 33, Indels: 19
0.85 0.09 0.05
Matches are distributed among these distances:
195 2 0.01
196 137 0.46
197 158 0.52
198 4 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (196 bp):
GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATGTGGAATGAA
CTCTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGCAGGTCGGAGAGGCAGAA
TGCACAAGCGGGGATCGACTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGCTGC
T
Found at i:15376130 original size:696 final size:695
Alignment explanation
Indices: 15374626--15376130 Score: 1701
Period size: 696 Copynumber: 2.2 Consensus size: 695
15374616 ACCCTCGGTT
* * * *
15374626 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGATGGAATGAACTCCGTATGCCTA
1 CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGA-CTGGGATGAACTCCGTATGCCTA
* * * * * * * * *
15374691 AGCCAACCCACGAAACAAGCGTGCGGGCACTCAACTGGTCAGAGAGGCAGAATGCGCAAGCTAGG
65 AGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATACACAAGCCAGG
* * * * *
15374756 GATCGGCTCGGTCCCCCCTAGCGTGCTGCCGATCCTACTGCTTGTCCTGCTGCTGCAACCCTCAG
130 GATCGACTCGGTCCCCCCTAGCGTGCTGCCAATCCTACTGCTGGTCCTGCTACAGCAACCCTCAG
* * * * ** * *
15374821 TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGATGTGGAATGAACTCTGTGTGCC
195 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
* * * * * *
15374886 TAAGCCAACCCATGAAACGAACGTGCAGGCCTTCAGCCGGTTGGTGAGTCAGAATGCACAAGTCG
260 TAAGCCAACCCATGAAACGAACGTACAGGCCTTCAGCCGGTCGGAGAGGCAAAATGCACAAGCCG
*** * * * * *
15374951 GGGATCAATTTGATCCCCCCTACGTGCCATCGATCCTGCTGCCGTAACCCTTGGTCCTATCCGAT
325 GGGATCAACCCGATCCCCCCTACGTGCCATCGATACTGCTGCCGCAACCCATGATCCGATCCGAT
* * * * **
15375016 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGGCATGAGCGTACGGGCACTGAGC
390 CTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTGAGC
* * * * * *
15375081 TGATCGAAGAGGCATAATACGCGAGCTGAGGATCAACCTGGTCCCTCTCTACGTGCTGCCGGTCC
455 TGATCGAAGAGGCATAATACGCAAGCCGAGGATCAACCCGGTCCCCCTCTACGTGCTACCGATCC
* * * * * * * *
15375146 CGTTGCCACAGCTCTCAGTCCGACTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAA
520 CGCTGCCACAACCCTCAGTCCGACTGGGACATAGACATGGAATGAACTCCCCATGCCGAAGCCAA
* * * * * * *
15375211 TCCACGAAATGGGCGTGCGGGCGCTCAGCCGATCAGAGAGGTAGAATGCCAAGCTGGGGATCAAC
585 CCCACAAAATGGGCGTGCGGGCACTCAACCGACCAGAGAGGTAGAATGCCAAGCCGAGGATCAAC
* * * * *
15375276 TCGGTCCCCCTTGCGTGCTACCGATCCTACTGTCGGAACCCACAGC
650 CCGATCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCACAGC
* *
15375322 CTGGT-TCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCC
1 C-GGTCT-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGGATGAACTCCGTATGCC
* * * * *
15375386 TAAGTCAACCCATGAAATGAGCGTGCGGGCGCTTAGCAGGTCGGAGAGGCAGAATACACAAGCCG
63 TAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATACACAAGCCA
* * * * * *
15375451 GGGATCGACTCGGTCCCCCCT-GCGTGCTGTCAATCCTGCTGCTGGTCTTGCTACAGTAAGCCTT
128 GGGATCGACTCGGTCCCCCCTAGCGTGCTGCCAATCCTACTGCTGGTCCTGCTACAGCAACCCTC
* *
15375515 GGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATG
193 AGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATG
* * * * **
15375580 CCTAAGCCAACCCATGAAATGAGCGTACGGGCGC-TCAGTCGGTCGGAGAGGCAAAATGGGCAAG
258 CCTAAGCCAACCCATGAAACGAACGTACAGGC-CTTCAGCCGGTCGGAGAGGCAAAATGCACAAG
*** * ** * * * *
15375644 CCGGGGATTGGCCCGATCCCCCCTATGTGCTGTTGATACTGTTGTCGCAACCCATGATCCGGTCC
322 CCGGGGATCAACCCGATCCCCCCTACGTGCCATCGATACTGCTGCCGCAACCCATGATCCGATCC
**
15375709 GATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGCT-CGGGCGTT
387 GATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG-TACGGGCACT
* * * ** * *
15375773 GAGCTGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCG
451 GAGCTGATCGAAGAGGCATAATACGCAAGCCGAGGATCAACCCGGTCCCCCTCTACGTGCTACCG
* *
15375838 ATCCTGCTGCCACAACCCT-GGATCC-AGCTGGGACATAGACATGGAATGAACTCCCCATGCCGA
516 ATCCCGCTGCCACAACCCTCAG-TCCGA-CTGGGACATAGACATGGAATGAACTCCCCATGCCGA
* * *
15375901 AGCCAACCCACAAAATGGGCGTGTGGGCACTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGAG
579 AGCCAACCCACAAAATGGGCGTGCGGGCACTCAACCGACCAGAGAGGTAGAATGC-CAAGCCGAG
* * * *** *
15375966 GATCGACCCGATCCCCCCTGCGTGCTATCGATCTTACTGCCGCAACTCTTGATC
643 GATCAACCCGATCCCCCCTGCGTGCTACCGATCCTACTGCCGCAAC-CCACAGC
*
15376020 CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGATGAACTCCGTACGCCTAA
1 CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGATGAACTCCGTATGCCTAA
** * *
15376085 GTCAACGTAAGAAACGGGCATGCGGGCGCTCAGCTGG-CTGGAGAGG
66 GTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGGTC-GGAGAGG
15376131 TCGATCGGAG
Statistics
Matches: 664, Mismatches: 134, Indels: 22
0.81 0.16 0.03
Matches are distributed among these distances:
695 3 0.00
696 445 0.67
697 211 0.32
698 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (695 bp):
CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGATGAACTCCGTATGCCTAA
GTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATACACAAGCCAGGG
ATCGACTCGGTCCCCCCTAGCGTGCTGCCAATCCTACTGCTGGTCCTGCTACAGCAACCCTCAGT
CCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCATGAAACGAACGTACAGGCCTTCAGCCGGTCGGAGAGGCAAAATGCACAAGCCGG
GGATCAACCCGATCCCCCCTACGTGCCATCGATACTGCTGCCGCAACCCATGATCCGATCCGATC
TTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTGAGCT
GATCGAAGAGGCATAATACGCAAGCCGAGGATCAACCCGGTCCCCCTCTACGTGCTACCGATCCC
GCTGCCACAACCCTCAGTCCGACTGGGACATAGACATGGAATGAACTCCCCATGCCGAAGCCAAC
CCACAAAATGGGCGTGCGGGCACTCAACCGACCAGAGAGGTAGAATGCCAAGCCGAGGATCAACC
CGATCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCACAGC
Found at i:15376535 original size:169 final size:160
Alignment explanation
Indices: 15376237--15376763 Score: 480
Period size: 169 Copynumber: 3.2 Consensus size: 160
15376227 CCGACTGGGG
* * * *
15376237 CTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCTATAAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGGTGCTCAAC
** ** *
15376302 CGAT-CGGAGAGGCAAAATGTGCAAGTCGAGGATCGGCCC-AGTCCCCCCTACGTATTGCCGATC
65 CG-TCCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCCCGA-TCCCCCCTACGTGCTGTCGATC
* *
15376365 CTGCTGCTGGTCCTGCTATCATAACCCTCAGTCTGCTCTGAT
128 CTGCTGCT-AT-C-G----C--AACCCTCAGTCCGCTCTGAT
* * * * *
15376407 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAATGTACGGGCGCTCAACC
1 CTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGGTGCTCAACC
* * * *
15376472 GTCCGGAGAGGCAGAATGCACAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCT-
66 GTCCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTG
* *
15376536 C--CTATCGCAACCCTCGGTCCGGTCTGAT
131 CTGCTATCGCAACCCTCAGTCCGCTCTGAT
* * *
15376564 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCT-AAG
1 CTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGGTGCTCAA-
* * * * * *
15376628 TCGGCCGGAGAGGCATAATGCACAAGTCGAGGATCGACCCGATCCCCCTCTACATGCTGTCGGTC
64 CCGTCCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATC
* * * * **
15376693 CCGCTGCCAT---AACCCTCGGTCCGACT-GGGG
128 CTGCTGCTATCGCAACCCTCAGTCCG-CTCTGAT
**
15376723 CTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCAC
15376764 GAAATGGGTG
Statistics
Matches: 298, Mismatches: 49, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
157 26 0.09
158 87 0.29
159 64 0.21
160 3 0.01
162 3 0.01
163 1 0.00
164 1 0.00
165 1 0.00
166 2 0.01
168 2 0.01
169 100 0.34
170 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (160 bp):
CTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGGTGCTCAACC
GTCCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTG
CTGCTATCGCAACCCTCAGTCCGCTCTGAT
Found at i:15376653 original size:158 final size:157
Alignment explanation
Indices: 15376387--15376907 Score: 526
Period size: 158 Copynumber: 3.3 Consensus size: 157
15376377 CTGCTATCAT
* * * *
15376387 AACCCTCAGTCTGCTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAT
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT
* * * *
15376452 GAATGTACGGGCGCTCAA-CCGTCCGGAGAGGCAGAATGCACAAGTCAAGGATTGGCCCGATCCC
66 GAATGTGCGGGCGCT-AAGCCGACCGGAGAGGCAGAATGCACAAGTCGAGGATTGACCCGATCCC
** *
15376516 CCCTGCGTGCTGTCGATCCTCCTATCGC
130 CCCTGCGTGCTGTCGATCCTCCTGCCAC
* * *
15376544 AACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * *
15376609 CGAACGTGCGGGTGCTAAGTCGGCCGGAGAGGCATAATGCACAAGTCGAGGATCGACCCGATCCC
65 TGAATGTGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCACAAGTCGAGGATTGACCCGATCCC
* * * *
15376674 CCTCTACATGCTGTCGGTCC-CGCTGCCAT
130 CC-CTGCGTGCTGTCGATCCTC-CTGCCAC
* ** *
15376703 AACCCTCGGTCC-GACTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
1 AACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
** * * * * * ** * * *
15376767 ATGGGTGTGCGGGCACTCAGCCAATCGAAGAGGCAGAATGTGCAAGTCGGGGATTGACCTGGTCC
64 ATGAATGTGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCACAAGTCGAGGATTGACCCGATCC
* ** *
15376832 CCCTTGCGTGCTACCGATCCTACTGCCAC
129 CCCCTGCGTGCTGTCGATCCTCCTGCCAC
** *
15376861 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGC
1 AACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGC
15376908 TTAGACTGGG
Statistics
Matches: 290, Mismatches: 65, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 27 0.09
158 143 0.49
159 119 0.41
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (157 bp):
AACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT
GAATGTGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCACAAGTCGAGGATTGACCCGATCCCC
CCTGCGTGCTGTCGATCCTCCTGCCAC
Found at i:15376917 original size:26 final size:26
Alignment explanation
Indices: 15376881--15376933 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15376871 CCGGTCCAAT
15376881 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
15376907 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15376933 C
1 C
15376934 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15377063 original size:12 final size:12
Alignment explanation
Indices: 15377048--15377082 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
15377038 GCGCTATCGA
15377048 TCCTGCTACTGG
1 TCCTGCTACTGG
15377060 TCCTGCTACTGG
1 TCCTGCTACTGG
15377072 TCCTGCTACTG
1 TCCTGCTACTG
15377083 TAACCCTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.34, G:0.23, T:0.34
Consensus pattern (12 bp):
TCCTGCTACTGG
Found at i:15378470 original size:26 final size:26
Alignment explanation
Indices: 15378441--15378493 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15378431 CCGATCCGAT
*
15378441 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGCATG
15378467 CTTAGACATGGAATGAACTCCGCATG
1 CTTAGACATGGAATGAACTCCGCATG
15378493 C
1 C
15378494 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGCATG
Found at i:15378810 original size:159 final size:159
Alignment explanation
Indices: 15378466--15378912 Score: 449
Period size: 159 Copynumber: 2.8 Consensus size: 159
15378456 AACTCCGTAT
* * * * ***
15378466 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAACGAACGTTTAGGCACTCA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGACAACCCATGAAATGAGCGTACGGGCACTCA
* * * *
15378530 GCCGGTCGAAGAGGCAAAATGTACAAGCCGAGGA-CCGGCCTGGTCTGCCTTGCGTGCTGTCAAT
65 GCCGGTCGGAGAGGCAAAATGTGCAAGCCGAGGATCAGGCCTGATCTGCCTTGCGTGCTGTCAAT
* * * *
15378594 TCGGCTACCGCAACCCTCATTCTGGTCCAA
130 CCCGCTACCACAACCCTCAGTCTGGTCCAA
* * * *
15378624 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGAGCGTACGGGCACTCA
* * ** * *
15378688 GCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGGCC-GATCTTTCTCTGTGTGCTGTCAG
65 GCCGGTCGGAGAGGCAAAATGTGCAAGCCGAGGATCAGGCCTGATCTGCCT-TGCGTGCTGTCAA
* *
15378752 TCCCGCTACCACAACCCTCAGTCTGG-CTAGG
129 TCCCGCTACCACAACCCTCAGTCTGGTCCA-A
* * * * * *
15378783 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGGGCATGCGGCCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGAGCGTACGGGCACTCAG
* * * * * *
15378848 CCGATCGGAGAGGCAAAATGTGCAAGCCGGGGATC-GACCCGATC-CCCTCTGCGTGCTGTCGAT
66 CCGGTCGGAGAGGCAAAATGTGCAAGCCGAGGATCAGGCCTGATCTGCCT-TGCGTGCTGTCAAT
15378911 CC
130 CC
15378913 TACTGTCGCA
Statistics
Matches: 236, Mismatches: 46, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 108 0.46
159 126 0.53
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCATGAAATGAGCGTACGGGCACTCAG
CCGGTCGGAGAGGCAAAATGTGCAAGCCGAGGATCAGGCCTGATCTGCCTTGCGTGCTGTCAATC
CCGCTACCACAACCCTCAGTCTGGTCCAA
Found at i:15378978 original size:26 final size:26
Alignment explanation
Indices: 15378942--15378994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15378932 CCGGTCTGAT
*
15378942 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15378968 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15378994 C
1 C
15378995 CTACGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15379704 original size:26 final size:26
Alignment explanation
Indices: 15379666--15379718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15379656 GGCTCAAACT
**
15379666 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15379692 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15379718 C
1 C
15379719 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:15380050 original size:26 final size:26
Alignment explanation
Indices: 15380012--15380061 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15380002 GTTCAATCTC
15380012 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
15380038 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
15380062 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:15380465 original size:158 final size:159
Alignment explanation
Indices: 15380173--15380706 Score: 510
Period size: 158 Copynumber: 3.4 Consensus size: 159
15380163 CTGTTGCTGG
* * *
15380173 TCCTGCTACCACAACCCTCGGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
1 TCCTGCTACCACAACCCTCAGTCCGATCTAGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* * * *
15380236 GCCAACCCACGAAATGAGCGTGCAGGTGCTCAGCCAGTCAGAGAGGCAGAATGTGTAAGCCGAGG
65 GCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGG
* * *
15380301 ACCGACCCGATACCCCCTACGTGCTATCGA
130 ATCGACCCGATCCCCCCTATGTGCTATCGA
* * * * *
15380331 TCCTGCTGCCGCAACCCTCAGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGACTAAA
1 TCCTGCTACCACAACCCTCAGTCCGATCTAGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** ** * * * * *
15380395 TTAACCCACGAAATGAGCGTTTGGGTGCTGAGCCGGTCGGATAGGCATAATGCGCAACCCGAGGA
66 CCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGA
*
15380460 TCGACCCGATCCCCCTCTGTGTGCTGA-CGA
131 TCGACCCGATCCCCC-CTATGTGCT-ATCGA
* * * *
15380490 TCCCGCTACCACAACCCTCAGTCCG-GCTAGGGCTTAGAC-GTGGAATGAACTCCATATGCCTAA
1 TCCTGCTACCACAACCCTCAGTCCGATCTAGAGCTTAGACTG-GGAATGAACTCCGTATGCCTAA
* * ** ** * * * *
15380553 GCCAACCCACGAAACGGGCGTGCGGGCACTCAATCGGCCAGAGAGACAGAATGCGCAAGTCGGGG
65 GCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGG
* * *
15380618 ATC-AGCCCGGTCCCCCCAATGTGCTGTCGA
130 ATCGA-CCCGATCCCCCCTATGTGCTATCGA
* ** * * **
15380648 TCCTACTGTCGCAACCCTCAATCC-AGTCT-GATATTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTACCACAACCCTCAGTCCGA-TCTAGAGCTTAGACTGGGAATGAACTCCGTATGC
15380707 TTAGACTGGG
Statistics
Matches: 298, Mismatches: 67, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 173 0.58
159 123 0.41
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
TCCTGCTACCACAACCCTCAGTCCGATCTAGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGA
TCGACCCGATCCCCCCTATGTGCTATCGA
Found at i:15380721 original size:26 final size:26
Alignment explanation
Indices: 15380681--15380732 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15380671 CAGTCTGATA
15380681 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
15380707 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15380733 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15381071 original size:672 final size:672
Alignment explanation
Indices: 15379692--15381679 Score: 2916
Period size: 672 Copynumber: 3.0 Consensus size: 672
15379682 ACTCCGTATG
** * *** * * * ** * * *
15379692 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGACTAAATTAACCCACGAAATGAGCGTTTGGGTGCTGAGC
* * * * * * ** *
15379757 CGGTCGGAGAGGCAGAATGCGCAAGCCGAGAAAT-GGCCTGATCCCCCTCTGCATGCT-ACCGGT
66 CGGTCGGATAGGCATAATGCGCAACCCGAG-GATCGACCCGATCCCCCTCTGTGTGCTGA-CGAT
* * ** * * * *
15379820 CTCGCTTCCACAACCCTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCC
129 CCCGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCC
* * * ** * * ** ** *
15379885 AACCCATGAAACGGGTGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCATAAGCCGGGGATC
194 AACCCACGAAACGGGCGTGCGGGCACTCAATCGGCCAGAGAGACAGAATGCGCAAGTCGGGGATC
*** * * * * * * * * ** ** *
15379950 -GTTTTGATCCTCGCTACGTGCTATCGATCCTGCTGTTGCAACCCTCGGTCTGGT-TCA-ATCTC
259 AG-CCCGGTCCCCCCAATGTGCTGTCGATCCTACTGTCGCAACCCTCAATCCAGTCTGATAT-T-
* * *
15380012 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACA
321 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACG
* * ** ** * * * * *
15380077 AAACGAGCGTGTGGGCACT-TATCAGGTCGGAGAGGCAAAATGCGCAAG-TCGAGGATCAAC-CT
386 AAATGAGCGTGCGGGCACTCGGTC-GACCGGAGAGGCATAATCCGTAAGCT-GGGGATCAGCTC-
* * *** * * * ** * * * *
15380139 AGTCCCCC-CTGCGTGCTGTCGATCCTGTTGCTGGTCCTGCTACCACAACCCTCGGTCCGACTGG
448 GGTCCCCCTTTGCGTGCTGTCGATCCCACTACTGGTCCTACTGCCGTAACCCTTGGTCTGGCTAG
15380203 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCA
513 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCA
15380268 GCCAGTCAGAGAGGCAGAATGTGTAAGCCGAGGACCGACCCGATACCCCCTACGTGCTATCGATC
578 GCCAGTCAGAGAGGCAGAATGTGTAAGCCGAGGACCGACCCGATACCCCCTACGTGCTATCGATC
15380333 CTGCTGCCGCAACCCTCAGTCCGATCTGAT
643 CTGCTGCCGCAACCCTCAGTCCGATCTGAT
15380363 CTTAGACTGGGAATGAACTCCGTATGACTAAATTAACCCACGAAATGAGCGTTTGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGACTAAATTAACCCACGAAATGAGCGTTTGGGTGCTGAGC
15380428 CGGTCGGATAGGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGACGATCC
66 CGGTCGGATAGGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGACGATCC
*
15380493 CGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACGTGGAATGAACTCCATATGCCTAAGCCAA
131 CGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
15380558 CCCACGAAACGGGCGTGCGGGCACTCAATCGGCCAGAGAGACAGAATGCGCAAGTCGGGGATCAG
196 CCCACGAAACGGGCGTGCGGGCACTCAATCGGCCAGAGAGACAGAATGCGCAAGTCGGGGATCAG
15380623 CCCGGTCCCCCCAATGTGCTGTCGATCCTACTGTCGCAACCCTCAATCCAGTCTGATATTAGACT
261 CCCGGTCCCCCCAATGTGCTGTCGATCCTACTGTCGCAACCCTCAATCCAGTCTGATATTAGACT
15380688 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATG
326 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATG
15380753 AGCGTGCGGGCACTCGGTCGACCGGAGAGGCATAATCCGTAAGCTGGGGATCAGCTCGGTCCCCC
391 AGCGTGCGGGCACTCGGTCGACCGGAGAGGCATAATCCGTAAGCTGGGGATCAGCTCGGTCCCCC
15380818 TTTGCGTGCTGTCGATCCCACTACTGGTCCTACTGCCGTAACCCTTGGTCTGGCTAGGGCTTAGA
456 TTTGCGTGCTGTCGATCCCACTACTGGTCCTACTGCCGTAACCCTTGGTCTGGCTAGGGCTTAGA
15380883 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAGCCAGTCA
521 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAGCCAGTCA
15380948 GAGAGGCAGAATGTGTAAGCCGAGGACCGACCCGATACCCCCTACGTGCTATCGATCCTGCTGCC
586 GAGAGGCAGAATGTGTAAGCCGAGGACCGACCCGATACCCCCTACGTGCTATCGATCCTGCTGCC
15381013 GCAACCCTCAGTCCGATCTGAT
651 GCAACCCTCAGTCCGATCTGAT
15381035 CTTAGACTGGGAATGAACTCCGTATGACTAAATTAACCCACGAAATGAGCGTTTGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGACTAAATTAACCCACGAAATGAGCGTTTGGGTGCTGAGC
15381100 CGGTCGGATAGGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGACGATCC
66 CGGTCGGATAGGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGACGATCC
15381165 CGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
131 CGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
15381230 CCCACGAAACGGGCGTGCGGGCACTCAATCGGCCAGAGAGACAGAATGCGCAAGTCGGGGATCAG
196 CCCACGAAACGGGCGTGCGGGCACTCAATCGGCCAGAGAGACAGAATGCGCAAGTCGGGGATCAG
15381295 CCCGGTCCCCCCAATGTGCTGTCGATCCTACTGTCGCAACCCTCAATCCAGTCTGATATTAGACT
261 CCCGGTCCCCCCAATGTGCTGTCGATCCTACTGTCGCAACCCTCAATCCAGTCTGATATTAGACT
15381360 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATG
326 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATG
15381425 AGCGTGCGGGCACTCGGTCGACCGGAGAGGCATAATCCGTAAGCTGGGGATCAGCTCGGTCCCCC
391 AGCGTGCGGGCACTCGGTCGACCGGAGAGGCATAATCCGTAAGCTGGGGATCAGCTCGGTCCCCC
15381490 TTTGCGTGCTGTCGATCCCACTACTGGTCCTACTGCCGTAACCCTTGGTCTGGCTAGGGCTTAGA
456 TTTGCGTGCTGTCGATCCCACTACTGGTCCTACTGCCGTAACCCTTGGTCTGGCTAGGGCTTAGA
* * ** * *
15381555 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGACGCTCAGCCGGTCG
521 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAGCCAGTCA
** * * ** *
15381620 GAGAGGCAGAATGCATAAGCC-AGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTG
586 GAGAGGCAGAATGTGTAAGCCGA-GGACCGACCCGATACCCCCTACGTGCTATCGATCCTG
15381680 TTACTGGTCC
Statistics
Matches: 1205, Mismatches: 102, Indels: 19
0.91 0.08 0.01
Matches are distributed among these distances:
670 2 0.00
671 360 0.30
672 841 0.70
673 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (672 bp):
CTTAGACTGGGAATGAACTCCGTATGACTAAATTAACCCACGAAATGAGCGTTTGGGTGCTGAGC
CGGTCGGATAGGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGACGATCC
CGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGGCACTCAATCGGCCAGAGAGACAGAATGCGCAAGTCGGGGATCAG
CCCGGTCCCCCCAATGTGCTGTCGATCCTACTGTCGCAACCCTCAATCCAGTCTGATATTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATG
AGCGTGCGGGCACTCGGTCGACCGGAGAGGCATAATCCGTAAGCTGGGGATCAGCTCGGTCCCCC
TTTGCGTGCTGTCGATCCCACTACTGGTCCTACTGCCGTAACCCTTGGTCTGGCTAGGGCTTAGA
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAGCCAGTCA
GAGAGGCAGAATGTGTAAGCCGAGGACCGACCCGATACCCCCTACGTGCTATCGATCCTGCTGCC
GCAACCCTCAGTCCGATCTGAT
Found at i:15381138 original size:158 final size:158
Alignment explanation
Indices: 15380877--15381378 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 158
15380867 CTGGCTAGGG
*
15380877 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * *
15380942 CAGTCAGAGAGGCAGAATGTGTAAGCCGAGGACCGACCCGATACCCCCTACGTGCTATCGATCCT
66 CGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTATGTGCTATCGATCCT
15381007 GCTGCCGCAACCCTCAGTCCGATCTGAT
131 GCTGCCGCAACCCTCAGTCCGATCTGAT
* *** ** *
15381035 CTTAGAC-TGGGAATGAACTCCGTATGACTAAATTAACCCACGAAATGAGCGTTTGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * * *
15381099 CCGGTCGGATAGGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGA-CGAT
65 CCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTATGTGCT-ATCGAT
* * * * **
15381163 CCCGCTACCACAACCCTCAGTCCG-GCTAGGG
128 CCTGCTGCCGCAACCCTCAGTCCGATCT-GAT
* * * ** **
15381194 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * *
15381259 CGGCCAGAGAGACAGAATGCGCAAGTCGGGGATC-AGCCCGGTCCCCCCAATGTGCTGTCGATCC
66 CGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCCCTATGTGCTATCGATCC
* * *
15381323 TACTGTCGCAACCCTCAATCC-AGTCTGAT
130 TGCTGCCGCAACCCTCAGTCCGA-TCTGAT
*
15381352 ATTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
15381379 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 62, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 148 0.54
159 120 0.44
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
CGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTATGTGCTATCGATCCT
GCTGCCGCAACCCTCAGTCCGATCTGAT
Found at i:15381292 original size:159 final size:158
Alignment explanation
Indices: 15380869--15381322 Score: 484
Period size: 159 Copynumber: 2.9 Consensus size: 158
15380859 CCCTTGGTCT
*
15380869 GGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGG
1 GGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
* * * * * *
15380934 TGCTCAGCCAGTCAGAGAGGCAGAATGTGTAAGCCGAGGACCGACCCGATACCCCCTACGTGCT-
66 TGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTATGTGCTG
* * *
15380998 ATCGATCCTGCTGCCGCAACCCTCAGTCC
131 A-CGATCCCGCTACCACAACCCTCAGTCC
* ** * *** **
15381027 GATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGACTAAATTAACCCACGAAATGAGCGTTTG
1 G-GCTAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCG
* * * * * *
15381090 GGTGCTGAGCCGGTCGGATAGGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGTGTG
64 GGTGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTATGTG
15381155 CTGACGATCCCGCTACCACAACCCTCAGTCC
128 CTGACGATCCCGCTACCACAACCCTCAGTCC
* * *
15381186 GGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG
1 GGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
** ** * * * * * *
15381251 CACTCAATCGGCCAGAGAGACAGAATGCGCAAGTCGGGGATC-AGCCCGGTCCCCCCAATGTGCT
66 TGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCCCTATGTGCT
*
15381315 GTCGATCC
130 GACGATCC
15381323 TACTGTCGCA
Statistics
Matches: 235, Mismatches: 54, Indels: 14
0.78 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 112 0.48
159 120 0.51
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
TGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTATGTGCTG
ACGATCCCGCTACCACAACCCTCAGTCC
Found at i:15381393 original size:26 final size:26
Alignment explanation
Indices: 15381353--15381404 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15381343 CAGTCTGATA
15381353 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
15381379 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15381405 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15389395 original size:158 final size:157
Alignment explanation
Indices: 15388935--15389437 Score: 482
Period size: 158 Copynumber: 3.2 Consensus size: 157
15388925 TCCAGCTGGG
* * * * **
15388935 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTAGGAAATGAGCGTGCAGGCATTCA
1 GCTTAGATATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * *
15388999 GTTGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCTCTCTACGTGCTATCGAT
66 GTCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCGATCCC-CTCTACGTGCT-TCGAT
* *
15389064 CCTGCTGCCGCAACCCTCAGT-TCGATTTGA
128 CCTACTGCCGCAACCCTCAGTCT-GGTTTGA
* * *
15389094 TCTT--ATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTG
1 GCTTAGATA-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * * * * *
15389157 AGTCGGCC-AGAGAGGCATAAT-CGTAAGTCAGGGATCGACTCGATCCACTTCTGCGTGCGATCG
65 AGTCGACCGA-AGAGGCAGAATGCGCAAGTCGGGGATCGAC-CGATCC-CCTCTACGTGC-TTCG
* * * * * *
15389220 ATCCCACTACCACAACCCTCAGTCTGGCTAGG
126 ATCCTACTGCCGCAACCCTCAGTCTGGTTTGA
* * * * * *
15389252 GCTTAGATAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCA
1 GCTTAGATATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* *
15389316 GTCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGATCCGATCCCCCCTACGTGCTTCCGATC
66 GTCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCGATCCCCTCTACGTGCTT-CGATC
* * * *
15389381 CTTCTGCCGTAACCCTCTGTCAGGTTTGA
129 CTACTGCCGCAACCCTCAGTCTGGTTTGA
*
15389410 TCTTAGAT-TGGGAATGAACTCCGTATGC
1 GCTTAGATATGGGAATGAACTCCGTATGC
15389438 TTAGACTGGT
Statistics
Matches: 272, Mismatches: 58, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 173 0.64
159 90 0.33
160 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (157 bp):
GCTTAGATATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
GTCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCGATCCCCTCTACGTGCTTCGATCCT
ACTGCCGCAACCCTCAGTCTGGTTTGA
Found at i:15390418 original size:158 final size:159
Alignment explanation
Indices: 15390054--15390410 Score: 363
Period size: 159 Copynumber: 2.3 Consensus size: 159
15390044 TGGTGCCCCG
*
15390054 CAACCCTCAGTCC-AGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACAA
1 CAACCCTCAGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACAA
* * * *
15390118 AATGAGCATGCGGGTGCTAAGCTGATCGAAGAGGCATAATACGAAAGCTGGGGATCAGCCCAGTC
65 AACGAGCATGCGAGTGCTAAGCTGATCGAAGAGGCAGAATACGAAAGCCGGGGATCAGCCCAGTC
* *
15390183 CCCCTCTGTGTGCTGACAGTCTGGCTACCA
130 CCCCTCTGCGTGCTGACAGTCTGACTACCA
* * ** * * *
15390213 CAACCCTCGGTCCG-GCTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CAACCCTCAGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACA
* * * * * * *
15390276 AAACGGGCGTGCGAGTGCTCAG-TCGA-CTGGAGAGGTAGAATGC-ACAAGCCGGGGATCGGCCC
64 AAACGAGCATGCGAGTGCTAAGCT-GATC-GAAGAGGCAGAATACGA-AAGCCGGGGATCAGCCC
* *
15390338 AGTCCCCC-CTGCGTGCTG-CTGATCCT-ACTACCG
126 AGTCCCCCTCTGCGTGCTGACAG-T-CTGACTACCA
*
15390371 TAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACT
1 CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACT
15390411 TCGTATGCTT
Statistics
Matches: 160, Mismatches: 28, Indels: 21
0.77 0.13 0.10
Matches are distributed among these distances:
157 3 0.02
158 50 0.31
159 106 0.66
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (159 bp):
CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAA
ACGAGCATGCGAGTGCTAAGCTGATCGAAGAGGCAGAATACGAAAGCCGGGGATCAGCCCAGTCC
CCCTCTGCGTGCTGACAGTCTGACTACCA
Found at i:15390428 original size:26 final size:26
Alignment explanation
Indices: 15390392--15390444 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15390382 CCGATCTGAT
15390392 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
15390418 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15390444 C
1 C
15390445 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15390636 original size:310 final size:309
Alignment explanation
Indices: 15390233--15390838 Score: 820
Period size: 310 Copynumber: 2.0 Consensus size: 309
15390223 TCCGGCTAGG
* **
15390233 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGAGCACTCAG
* * **
15390298 TCGACTGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCAG-TCCCCCCTGCGTGCTGCTGATC
66 CCGACTGGAGAGGCAGAATGCACAAGCCGGGGATCGG-CCAGATCCCCCCTGCGTGCTGCCAATC
* *
15390362 CTACTACCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
130 CTACTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
** * * *
15390427 GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGTCGGAG
195 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAGCC-GACGGAA
*
15390492 AGGCATAATGCACAAGCCAAGGATCAACCCGGTCCCCCTCTGCGTGCTGGA
259 AGGCATAATGCACAAGCCAAGGATCAACCCGATCCCCCTCTGCGTGCTGGA
* * *
15390543 GCTTAGACATGGAATGAACTCTCTATGCCTAAGGCAACCCACGAAACGGACGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGAGCACTCAG
* * ** *
15390608 CCG-GTCGGAGAGGCAGAATTCACAAGCCGGGGATCGGCTTGATCCCCCCTGCGTGTTGCCAATC
66 CCGACT-GGAGAGGCAGAATGCACAAGCCGGGGATCGGCCAGATCCCCCCTGCGTGCTGCCAATC
* * ** * * *
15390672 TTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
130 CTACTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
** * * *
15390737 GGGATGAACTCCATATTTCTAAGTCAACCCATGAAATGAACGTGCGGGCGCTTAGCCGACGGAAA
195 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAGCCGACGGAAA
* ** *
15390802 GGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCC
260 GGCATAATGCACAAGCCAAGGATCAACCCGATCCCCC
15390839 CTTACGTGCT
Statistics
Matches: 255, Mismatches: 39, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
309 41 0.16
310 214 0.84
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (309 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGAGCACTCAG
CCGACTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCAGATCCCCCCTGCGTGCTGCCAATCC
TACTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAGCCGACGGAAAG
GCATAATGCACAAGCCAAGGATCAACCCGATCCCCCTCTGCGTGCTGGA
Found at i:15390654 original size:126 final size:125
Alignment explanation
Indices: 15390417--15390662 Score: 316
Period size: 126 Copynumber: 2.0 Consensus size: 125
15390407 AACTTCGTAT
* * * * *
15390417 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCTCTATGCCTAAGGCAACCCACGAAAGGAGCGTACGGGCACTCAG
* *
15390482 CCGGTCGGAGAGGCATAATGCACAAGCCAAGGATCAACCCGGTCCCCCTCTGCGTGCTGGA
66 CCGGTCGGAGAGGCAGAATGCACAAGCCAAGGATCAACCCGATCCCCC-CTGCGTGCTGGA
*
15390543 GCTTAGACAT-GGAATGAACTCTCTATGCCTAAGGCAACCCACGAAACGGA-CGTGCGGGCACTC
1 GCTTAGAC-TGGGAATGAACTCTCTATGCCTAAGGCAACCCACGAAA-GGAGCGTACGGGCACTC
* ** ** **
15390606 AGCCGGTCGGAGAGGCAGAATTCACAAGCCGGGGATCGGCTTGATCCCCCCTGCGTG
64 AGCCGGTCGGAGAGGCAGAATGCACAAGCCAAGGATCAACCCGATCCCCCCTGCGTG
15390663 TTGCCAATCT
Statistics
Matches: 103, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
125 7 0.07
126 93 0.90
127 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.30, T:0.17
Consensus pattern (125 bp):
GCTTAGACTGGGAATGAACTCTCTATGCCTAAGGCAACCCACGAAAGGAGCGTACGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCAAGGATCAACCCGATCCCCCCTGCGTGCTGGA
Found at i:15391083 original size:26 final size:26
Alignment explanation
Indices: 15391043--15391095 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15391033 CCGGTCTGAT
*
15391043 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
15391069 CTTAGACATGG-AATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACTCTGTATG
15391095 C
1 C
15391096 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:15391462 original size:160 final size:157
Alignment explanation
Indices: 15391068--15391507 Score: 481
Period size: 160 Copynumber: 2.8 Consensus size: 157
15391058 AACTTTGTAT
* ** *
15391068 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15391133 TCGACCGGAGAGGCAAAATGCGCAAGCCGGGGACTGGCTCGATCCCCCCTGCGTGCTGCCGATCC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGA-TGACCCGATCCCCCCTGCGTGCTACCGACCC
* * * **
15391198 TACTACCGCAGCCCTTGGTCTGGTCTGA
130 CACTACCACAACCCTCAGTCTGGTCTGA
* * * ** * *
15391226 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAA-CTCAACCCATGAAATGAATGTGTGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGCGCTC
* *
15391289 AGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATTGACCCGATCCCCCTCTGCGTGCTACCGG
64 AGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGA-TGACCCGATCCCCC-CTGCGTGCTACCGA
* * *
15391354 CCCCGCTGCCCACAACCCTCAGTCTGG-CTAGG
127 CCCCACT-ACCACAACCCTCAGTCTGGTCT-GA
* * *
15391386 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15391451 CCTATCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGATCCCTCCTGCGTGCT
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATGA-CCCGATCCCCCCTGCGTGCT
15391508 GTCGATCCTG
Statistics
Matches: 231, Mismatches: 43, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 93 0.40
159 29 0.13
160 105 0.45
161 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATGACCCGATCCCCCCTGCGTGCTACCGACCCC
ACTACCACAACCCTCAGTCTGGTCTGA
Found at i:15392249 original size:159 final size:158
Alignment explanation
Indices: 15391938--15392433 Score: 473
Period size: 159 Copynumber: 3.1 Consensus size: 158
15391928 CTTAGACATT
* * * * *
15391938 GAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGCCGACCAGAGA
1 GAATGAACTTCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGA
* * * * ** * * * *
15392003 GGCAGAATGCACAAGTCGGGGACCG-GCCTGATCCCCCCCTGTGTGCTGTCGATCCTGCTATCGC
66 GGCAGAATGCACAAGCCGGGGATCGACCCAG-T-CCCCCCTACGTGCTGCCGATCCTACTACCAC
* *
15392067 AACCCTC-GATCCAATCTAATCTTAGACTGG
129 AACCCTCAG-TCCGATCTGATCTTAGACTGG
* * * * *
15392097 GAATGAAGTTCGTATGCTTAA-CTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGACCGGAG
1 GAATGAACTTCGTATGCTTAAGC-CAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAG
* * * * * *
15392161 AGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGAT-CTCGCTGCCA
65 AGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCC-CTACGTGCTGCCGATCCT-ACTACCA
* * * *
15392225 CAACTCTTAGTCTGA-CTGGGTCTTAGACAT-G
128 CAACCCTCAGTCCGATCT-GATCTTAGAC-TGG
* * * * * * *
15392256 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGTGCTCAGTCGACTGGAGA
1 GAATGAACTTCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGA
* * * * **
15392321 GGTAGAATGCACAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCTGATCCTACTACCGTAA
66 GGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTACTACCACAA
15392386 CCCTCAGTCCGATCTGATCTTAGACTGG
131 CCCTCAGTCCGATCTGATCTTAGACTGG
15392414 GAATGAACTTCGTATGCTTA
1 GAATGAACTTCGTATGCTTA
15392434 GACTGGGGAT
Statistics
Matches: 268, Mismatches: 58, Indels: 23
0.77 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 65 0.24
159 196 0.73
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GAATGAACTTCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGA
GGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTACTACCACAA
CCCTCAGTCCGATCTGATCTTAGACTGG
Found at i:15392258 original size:859 final size:847
Alignment explanation
Indices: 15390543--15392528 Score: 2428
Period size: 859 Copynumber: 2.3 Consensus size: 847
15390533 GCGTGCTGGA
* * * **
15390543 GCTTAGACATGGAATGAACTCTCTATGCCTAAGGCAACCCACGAAACGGACGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * ** * * *
15390608 CCGGTCGGAGAGGCAGAATTCACAAGCCGGGGATCGGCTTGATCCCCCCTGCGTGTTGCCAATCT
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTG-CGATCC
*
15390673 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
130 TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* ** * * *
15390738 GGATGAACTCCATATTTCTAAGTCAACCCATGAAATGAA-CGTGCGGGCGCTTAGCCGAC----G
195 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAAGCGTGCGGGCGCTCAGCCGACGAGAG
15390798 G-AAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTTACGTGCTGCCACAACCCTCG
259 GCAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTTACGTGCTGCCACAACCCTCG
* * ** *
15390862 TTCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTAC
324 TTCGACTGGGGCTTAGACATAGAATAAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTAC
* * * **
15390927 AGGTGCTCAGCCGGTCGGAGAGACAGAATGCAAAAGCCAGGGATCAACCCAGTCCCCTCTGTGCG
389 AGGCGCTCAGCCGGTCGGAGAGACAAAATGCAAAAGCCAGGGATCAACCCAGTCCCCCCTACGCG
* * ** *
15390992 CTATCGATCCTGCTGCTGGTATTGCTGTCACAACCTTTGATCCGGTCTGATCTTAGACTGGAAAT
454 CTATCGATCCTGCTGCTGGTACTACTACCACAACCTTTGATCCGGTCTGATCCTAGACTGGAAAT
**
15391057 GAACTTTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATG
519 GAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATG
* * * * *
15391122 CGGGCGCTCAGTCGACCGGAGAGGCAAAATGCGCAAGCCGGGGACTGGCTCGATCCCCCCTGCGT
584 CGGGCACTCAGCCGACCAGAGAGGCAAAATGCACAAGCCGGGGACCGGCTCGATCCCCCCTGCGT
* * * *** *
15391187 GCTGCCGATCCTACTACCGCAGCCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
649 GCTGCCGATCCTACTACCGCAACCCTCGATCCAATCTAATCTTAGACTGGGAATGAACTTCGTAT
* * *
15391252 GCCTAACTCAACCCATGAAATGAATGTGTGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAG
714 GCCTAACTCAACCCATGAAACGAACGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAG
* * * *
15391317 CCGGGGATTGACCCGATCCCCCTCTGCGTGCTACCGGCCCCGCTGCCCACAACCCTCAGTCTGGC
779 CCGGGGATCGACCCGATCCCCCTCTACGTGCTACCGACCCCGCTGCCCACAACCCTCAGTCTGAC
15391382 TAGG
844 TAGG
*
15391386 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * * * * *
15391451 CCTATCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGATCCCTCCTGCGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTG-CGATCC
* * * * *
15391516 TGCTGTCGCAACCTTCGGTCCGGTCTGGTCTTAGACTGGAAATGAACTCCATATGCTTGGACTGG
130 TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
15391581 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTCAGCCGATCGGAGA
195 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGA-C-GAGA
* * * * * *
15391646 GGCTAGTCGGAGAGGCATAATGCGTAAGCTGGGGATCAGCCTGGT-CCCCCTCTGCGTGTTGCCA
258 GGC-A-----A-AGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCT-TACGTGCTGCCA
* **
15391710 CAACCCTCAG-TCTGGCTGGGGCTTAGACATAGAATAAACTCCATATGCCTAAGCCAACCCATGA
315 CAACCCTC-GTTC-GACTGGGGCTTAGACATAGAATAAACTCCATATGCCTAAGCCAACCCACAA
* * * * * * * * ** * *
15391774 AACGAGTGTGCGGGCGCTCAGCCGGTTGGAGAGGCAAAATGTATAAGCTAGGGATCGGCTCGGTG
378 AACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGACAAAATGCAAAAGCCAGGGATCAACCCAGT-
* * **
15391839 CCCCCCTACGTGCTA-CAGATCCTGCTGCTGGTCCTACTACCGTAACCTTTGATCCGGTCTGATC
442 CCCCCCTACGCGCTATC-GATCCTGCTGCTGGTACTACTACCACAACCTTTGATCCGGTCTGATC
*
15391903 CTAGACTAGG-AATGAACTCCGTATGCTTAGACATTGAATGAACT-TCGTATGCCTAAGCCAACC
506 CTAGACT-GGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACC
* ** * *
15391966 CACGAAACGAGTGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGGGGACCGGC-
569 CACAAAACGAGCATGCGGGCACTCAGCCGACCAGAGAGGCAAAATGCACAAGCCGGGGACCGGCT
* * * *
15392030 CTGATCCCCCCCTGTGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCAATCTAATCTTAGACT
634 C-GAT-CCCCCCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGATCCAATCTAATCTTAGACT
* * * *
15392095 GGGAATGAAGTTCGTATGCTTAACTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGACCGGA
697 GGGAATGAACTTCGTATGCCTAACTCAACCCATGAAACGAACGTGCGGGCGCTGAGCCGACCGGA
* * * * *
15392160 GAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGATCTCGCTG-CC
762 GAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTACCGACCCCGCTGCCC
* *
15392224 ACAACTCTTAGTCTGACT-GG
827 ACAACCCTCAGTCTGACTAGG
*
15392244 GTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGTGCTCA
1 G-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCA
* *
15392309 GTCGA-CTGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCC-AGTCCCCCCTGCGTGCTGCTGA
65 GCCGATC-GGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGA-TCCCCCCTGCGTGCTGC-GA
* ** * * * *
15392372 TCCTACTACCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
127 TCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
15392437 TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAG
192 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACGAG
**
15392502 A-G---AGGCAGGATGCGCAAGCCGGGGATC
257 AGGCAAAGGCATAATGCGCAAGCCGGGGATC
15392529 GAACGGATGA
Statistics
Matches: 967, Mismatches: 148, Indels: 53
0.83 0.13 0.05
Matches are distributed among these distances:
842 2 0.00
843 216 0.22
844 1 0.00
846 21 0.02
849 2 0.00
851 1 0.00
856 8 0.01
857 52 0.05
858 104 0.11
859 398 0.41
860 162 0.17
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (847 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCGATCCT
GCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACGAGAGGC
AAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTTACGTGCTGCCACAACCCTCGTT
CGACTGGGGCTTAGACATAGAATAAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACAG
GCGCTCAGCCGGTCGGAGAGACAAAATGCAAAAGCCAGGGATCAACCCAGTCCCCCCTACGCGCT
ATCGATCCTGCTGCTGGTACTACTACCACAACCTTTGATCCGGTCTGATCCTAGACTGGAAATGA
ACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCG
GGCACTCAGCCGACCAGAGAGGCAAAATGCACAAGCCGGGGACCGGCTCGATCCCCCCTGCGTGC
TGCCGATCCTACTACCGCAACCCTCGATCCAATCTAATCTTAGACTGGGAATGAACTTCGTATGC
CTAACTCAACCCATGAAACGAACGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCC
GGGGATCGACCCGATCCCCCTCTACGTGCTACCGACCCCGCTGCCCACAACCCTCAGTCTGACTA
GG
Found at i:15392440 original size:26 final size:26
Alignment explanation
Indices: 15392404--15392456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15392394 CCGATCTGAT
15392404 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
15392430 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15392456 C
1 C
15392457 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15393463 original size:158 final size:156
Alignment explanation
Indices: 15393163--15393664 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 156
15393153 ACTCCGTATG
*
15393163 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCAC-AAG
* * * * * * *
15393227 CCGGCCGGAGCGGCAGAATGCGTAAGCCAGGGATTGGCTCGGT-CCACTCCTGTGTGCTGTCGAT
63 CC-GCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCT-CTGCGTGCTGCCGAT
15393291 CCTACTG-CAGCAACCCTCAGTCCGGTTCGAT
126 CCTACTGCCA-CAACCCTCAGTCCGGTTCGAT
* *
15393322 CTT-GACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACAGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCACA-AGC
* * * * *
15393386 CAGCCGAAGAGGCATAATGCGCAAGCCGGGGAACGGCTTGGTCCCCCTCTGCGTGCTGCCGGTCC
64 C-GCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * **
15393451 CACTGCCACAACCCTCAGCCCAGCTGGGG
128 TACTGCCACAACCCTCAGTCCGGTTCGAT
* * * *
15393480 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGTGGGGGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAAC--GAGCGTGCGGGCACAA
* * * *
15393544 -CCGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGAAC-CGGTCCCCC-CTACGTGCTACCGA
62 GCCG-CCGAAGAGGCAGAATGCGCAAGCCAGGGATCG-GCTCGGTCCCCCTCTGCGTGCTGCCGA
* ** * *
15393606 TCCTACTACCGTAACCCCCTA-TCCGGTTTGAT
125 TCCTACTGCCACAACCCTC-AGTCCGGTTCGAT
*
15393638 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15393665 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 52, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 176 0.63
159 86 0.31
160 3 0.01
161 11 0.04
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCACAAGCCG
CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGATCCTAC
TGCCACAACCCTCAGTCCGGTTCGAT
Found at i:15393674 original size:26 final size:26
Alignment explanation
Indices: 15393638--15393690 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15393628 CCGGTTTGAT
*
15393638 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15393664 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15393690 C
1 C
15393691 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15394586 original size:26 final size:26
Alignment explanation
Indices: 15394557--15394607 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15394547 GGTCTAATCA
*
15394557 TAGACTGGGAATGAGCTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
15394583 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15394608 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15394952 original size:26 final size:26
Alignment explanation
Indices: 15394923--15394975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15394913 CCGATCTGAT
15394923 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15394949 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15394975 C
1 C
15394976 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15394954 original size:184 final size:182
Alignment explanation
Indices: 15394764--15395328 Score: 589
Period size: 195 Copynumber: 3.0 Consensus size: 182
15394754 TCCGACAGGG
* * * * * *
15394764 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTAAACCAATGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15394829 TCG-GTCGGAGAGGTAGAATGCGTAAGCCGGGGACCGACCCGGTCCCTCCTGTGTGCTGTCGATC
66 CCGACT-GGAGAGGCAGAATGCCTAAG-CGGGGACCGACCCGGTCCC-CCTGTGTGCTGTCGATC
15394893 CTGTTGTCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
128 CTGTTGTCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
* * * *
15394948 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCA
* * * * ** *
15395012 GCCGACTGGAGAGGCAGATTGCTTAAGCGGGGATCGATCCGGTCCCCCCTGCATGCTATCGATCC
65 GCCGACTGGAGAGGCAGAATGCCTAAGCGGGGACCGACCCGGT-CCCCCTGTGTGCTGTCGAT-C
* * * *
15395077 TGCTATTGGTATTGCTACTACAACCCTCGATCCGGTCCGATCTTAGAC-AGGGAATTAACTCCGT
128 --C---T-G--TTG-T-C-ACAACCCTCGGTCCGATCTGATCTTAGACTA-GGAATGAACTCCGT
15395141 AT
181 AT
*
15395143 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CACACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCA-ACGAAACGAGCGTGCGGGCGCTCA
* * *
15395207 GCCGACTGGAGAGGCAGAATGCCCAAGTCGAGGACCGACCCGGTCCCCTGTGTGTGCTGTCGATC
65 GCCGACTGGAGAGGCAGAATGCCTAAG-CGGGGACCGACCCGGTCCCC-CTGTGTGCTGTCGATC
* ** * * * *
15395272 CTGCTACCGCAACCCTCGGTCCGTTCTGATCTTAGATTGGGAATGAACTCCGTAT
128 CTGTTGTCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
15395327 GC
1 GC
15395329 CTAAGTCAAC
Statistics
Matches: 311, Mismatches: 49, Indels: 42
0.77 0.12 0.10
Matches are distributed among these distances:
183 28 0.09
184 117 0.38
185 2 0.01
186 1 0.00
187 1 0.00
189 2 0.01
190 2 0.01
192 3 0.01
193 2 0.01
194 3 0.01
195 125 0.40
196 25 0.08
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAG
CCGACTGGAGAGGCAGAATGCCTAAGCGGGGACCGACCCGGTCCCCCTGTGTGCTGTCGATCCTG
TTGTCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:15395147 original size:26 final size:26
Alignment explanation
Indices: 15395118--15395170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15395108 CCGGTCCGAT
*
15395118 CTTAGACAGGGAATTAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
15395144 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
15395170 C
1 C
15395171 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:15395647 original size:26 final size:26
Alignment explanation
Indices: 15395618--15395670 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15395608 CCGATCTGAT
15395618 CTTAGACTGA-GAATGAACTCCGTATG
1 CTTAGA-TGAGGAATGAACTCCGTATG
* *
15395644 CTTAGATTAGGGATGAACTCCGTATG
1 CTTAGATGAGGAATGAACTCCGTATG
15395670 C
1 C
15395671 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATGAGGAATGAACTCCGTATG
Found at i:15396373 original size:26 final size:26
Alignment explanation
Indices: 15396335--15396387 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15396325 GGCTCAAAAT
*
15396335 CTTAGACTAGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15396361 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15396387 C
1 C
15396388 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15396855 original size:156 final size:155
Alignment explanation
Indices: 15396362--15396983 Score: 536
Period size: 158 Copynumber: 4.0 Consensus size: 155
15396352 TTCCGTATGC
* * *
15396362 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAACT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCT
* * * * ** * ** *
15396427 AGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCAGCCCGATCCCCTCCACGTGCTGTCGATCATG
66 GGCCGGAAAGGCAAAATGCGCAAG-CCGGGATCGGCCCG-TCCCCTCTGCGTGCTGTCGATCCTG
* *
15396492 CTGCCGCAACCCTCAGTCCGGTCT-GAT
129 CTGCCACAACCCTCAGTCCGG-CTGGGT
* * * * * * *
15396519 CTTAGACTTGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAATGAGCATGCGGGCACTGAGC
1 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * *
15396584 CGACC-GAAGAGGCATAATGCGCAAGCCGGGATCGGCCCGGTCCCCCTCTGCGTGCTG-CTGGTC
65 TGGCCGGAA-AGGCAAAATGCGCAAGCCGGGATCGGCCC-GT-CCCCTCTGCGTGCTGTC-GATC
* * * * * *
15396647 CTGCTACTAGAACCCTCGGTCCGGCAAGGGC
126 CTGCTGCCACAACCCTCAGTCCGGC-TGGGT
* * * * *
15396678 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAGACGGGTGCGCGGGCGCTCAGCT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCT
* * * *
15396743 GGCCGGAAAGGCAAAACGGGCAA-CCGGGATCGGCCCAGTCCCCTTTGCGTGCTGTCGATCCCGC
66 GGCCGGAAAGGCAAAATGCGCAAGCCGGGATCGGCCC-GTCCCCTCTGCGTGCTGTCGATCCTGC
*
15396807 TGCCACAACCCTCAGTCTGGCTGGGGT
130 TGCCACAACCCTCAGTCCGGCT-GGGT
* * * * * *
15396834 TTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAA-CAGGCATGCAGGGCACTCAA
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGA-GCGTGC-GGGCGCTCAG
* * * * * * * *
15396898 CCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGTCCGACCCAC-CTGCGTGCTGCCGATCC
64 CTGGCCGGAAAGGCAAAATGCGCAAGCC-GGGATCGGCCCGTCCC-CTCTGCGTGCTGTCGATCC
* * *
15396962 TGCTGTCGCAACCCTCGGTCCG
127 TGCTGCCACAACCCTCAGTCCG
15396984 ATCCGATCTT
Statistics
Matches: 367, Mismatches: 83, Indels: 28
0.77 0.17 0.06
Matches are distributed among these distances:
156 83 0.23
157 58 0.16
158 212 0.58
159 14 0.04
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (155 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCT
GGCCGGAAAGGCAAAATGCGCAAGCCGGGATCGGCCCGTCCCCTCTGCGTGCTGTCGATCCTGCT
GCCACAACCCTCAGTCCGGCTGGGT
Found at i:15396953 original size:314 final size:315
Alignment explanation
Indices: 15396360--15396983 Score: 706
Period size: 314 Copynumber: 2.0 Consensus size: 315
15396350 AATTCCGTAT
* * *
15396360 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGAGCTCAA
* * * * **
15396425 CTAGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCAGCCCGATCCCCTCCACGTGCTGTCGATCA
66 CTAGCCGGAAAGGCAAAACGCGCAAG-CCGGGATCAGCCCGATCCCCTCCACGTGCTGTCGATCA
* * * * * * *
15396490 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGGCTAAGTCAA
130 CGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAA
* * * * *
15396555 CCCACGAAATGAGCATGCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGATCGGC
195 CCCACGAAAAGAGCATGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAGGATCGGC
* * * *
15396620 CCGGTCCCCCTCTGCGTGCTGCTGGTCCTGCTACTAG-AACCCTCGGTCCGGCAAGG
260 CCGGACCCACTCTGCGTGCTGCCGATCCTGCT-CTAGCAACCCTCGGTCCGGCAAGG
* * * * *
15396676 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAGACGGGTGCGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGAGCTCAA
* * * *** *
15396741 CTGGCCGGAAAGGCAAAACGGGCAA-CCGGGATCGGCCC-AGTCCCCTTTGCGTGCTGTCGATCC
66 CTAGCCGGAAAGGCAAAACGCGCAAGCCGGGATCAGCCCGA-TCCCCTCCACGTGCTGTCGATCA
* *
15396804 CGCTGCCACAACCCTCAGTCTGG-CTGGGGT-TTAGACATGGAATGAAATCCCTATGCCTAAGCC
130 CGCTGCCACAACCCTCAGTCCGGTCT--GATCTTAGACATGGAATGAAATCCCTATGCCTAAGCC
* ** *
15396867 AACCCATGAAACAG-GCATGCAGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGA
193 AACCCACGAAA-AGAGCATGC-GGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCC-AGGA
* * *
15396931 TCGGTCC-GACCCAC-CTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCG
255 TCGGCCCGGACCCACTCTGCGTGCTGCCGATCCTGCTCTAGCAACCCTCGGTCCG
15396984 ATCCGATCTT
Statistics
Matches: 255, Mismatches: 46, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
313 5 0.02
314 125 0.49
315 40 0.16
316 85 0.33
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGAGCTCAA
CTAGCCGGAAAGGCAAAACGCGCAAGCCGGGATCAGCCCGATCCCCTCCACGTGCTGTCGATCAC
GCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAAC
CCACGAAAAGAGCATGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAGGATCGGCC
CGGACCCACTCTGCGTGCTGCCGATCCTGCTCTAGCAACCCTCGGTCCGGCAAGG
Found at i:15397020 original size:26 final size:26
Alignment explanation
Indices: 15396991--15397043 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15396981 CCGATCCGAT
15396991 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGATTGGAAATGAACTCCGTATG
** *
15397017 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGAAATGAACTCCGTATG
15397043 C
1 C
15397044 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGAAATGAACTCCGTATG
Found at i:15398071 original size:26 final size:26
Alignment explanation
Indices: 15398033--15398085 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15398023 CCAGTCCAAT
15398033 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15398059 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15398085 C
1 C
15398086 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15398179 original size:356 final size:356
Alignment explanation
Indices: 15397490--15398193 Score: 930
Period size: 356 Copynumber: 2.0 Consensus size: 356
15397480 TGTCAGTCCC
15397490 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * ** *
15397555 CCACCAAACGGGCGTGCAGGCGCTCAACCGTCTGGAGAGGTTGAATGCGCAAGCTGGGGGATCGG
66 CCACCAAACGAGCGTGCAGGCGCTCAACCGACTGGAGAGGCAGAATGCACAAGCTGGGGGATCGG
** * * ** * *
15397620 CCCAGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCAATCTGGTCTAATCTTAGATT
131 CCCAGTCCCCCCTGCGTGCTGTAAATCCTGCTACCACAACCCTCAATCCAGTCCAATCTTAGACT
* * *
15397685 GGGAATGAACTCTGTACGCTTAGACAGGGGATGAACTCGGTATGCCTAAGCAACCCATGAAACGA
196 GGGAATGAACTCCGTACGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGA
* * * ** * * **
15397750 GCGTGCGGGCGCTCAGCCAGCTGGAGAGGCATAATGTGCAAGCCGAGGTTCGGCCCGATCCCCCC
261 GCGTGCGGGCACACAGCCAGCTGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCAAC
15397815 TCTGCGTGCTGTCGATCCTGCTAACGATCCT
326 TCTGCGTGCTGTCGATCCTGCTAACGATCCT
* * **
15397846 GCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
15397911 CCACGAAACGAGTGTGCGGGCGCTCAGCCAGAC-GGAGAGGCAGAATGCACAAGCT-GGGGATCG
66 CCACCAAACGAGCGTGCAGGCGCTCAACC-GACTGGAGAGGCAGAATGCACAAGCTGGGGGATCG
* * * **
15397974 GCTCGGTCCCCCCCTGCGTGCTGTAAATCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGA
130 GCCCAGT-CCCCCCTGCGTGCTGTAAATCCTGCTACCACAACCCTCAATCCAGTCCAATCTTAGA
* *
15398039 CTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
194 CTGGGAATGAACTCCGTACGCTTAGACAGGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAA
* * * * *
15398104 CGAGCGTGCGGGCACACAGTC-GATCGGAGAGGCGGAATGCACAAGTCGGGGATCGACCCGATCC
258 CGAGCGTGCGGGCACACAGCCAGCT-GGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCC
*
15398168 CAACT-TGCGTGCTGTCGATCTTGCTA
322 CAACTCTGCGTGCTGTCGATCCTGCTA
15398194 TCCGTAACCC
Statistics
Matches: 298, Mismatches: 46, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
355 13 0.04
356 219 0.73
357 66 0.22
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (356 bp):
GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACCAAACGAGCGTGCAGGCGCTCAACCGACTGGAGAGGCAGAATGCACAAGCTGGGGGATCGG
CCCAGTCCCCCCTGCGTGCTGTAAATCCTGCTACCACAACCCTCAATCCAGTCCAATCTTAGACT
GGGAATGAACTCCGTACGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGA
GCGTGCGGGCACACAGCCAGCTGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCAAC
TCTGCGTGCTGTCGATCCTGCTAACGATCCT
Found at i:15399533 original size:26 final size:26
Alignment explanation
Indices: 15399497--15399549 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15399487 CCGGTTCGAT
*
15399497 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
15399523 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15399549 C
1 C
15399550 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15400127 original size:26 final size:26
Alignment explanation
Indices: 15400098--15400150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15400088 CCGGTCCGAT
*
15400098 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
*
15400124 CTTAGACATGGAATAAACTTCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
15400150 C
1 C
15400151 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:15401245 original size:159 final size:159
Alignment explanation
Indices: 15401076--15401370 Score: 374
Period size: 159 Copynumber: 1.9 Consensus size: 159
15401066 GCCTAGACGT
* * * * * **
15401076 TGAGCAGACCGAAGTGGCATAATACGCAAGTCAAGGATCGGCTCGGTCCCCCTCTGCTTGCTGCC
1 TGAGCAGACCGAAGAGGCATAATACGAAAGCCAAGGATCGACCCGGTCCCCCTCTGCTCACTGCC
* * **
15401141 GGTCCCGCTGCCACAACCCACGATCTGGTTGGGGCTTAGACATGGAATAAACTCACTATGCCTAA
66 AGTCCCACTGCCACAACCCACGATCTGACTGGGGCTTAGACATGGAATAAACTCACTATGCCTAA
*
15401206 GGCAACCCACAAAATGGGCGTACGGGTGC
131 GCCAACCCACAAAATGGGCGTACGGGTGC
* * ** *
15401235 TGAGCCGACCGAAGAGGCATAATGCGAAAGCCGGGGATCGACCCGGTCCCCCTCTGCTCACTGTC
1 TGAGCAGACCGAAGAGGCATAATACGAAAGCCAAGGATCGACCCGGTCCCCCTCTGCTCACTGCC
* * * * * * *
15401300 AGTCCCATTGCCACAGCCCTCGTTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
66 AGTCCCACTGCCACAACCCACGATCTGACTGGGGCTTAGACATGGAATAAACTCACTATGCCTAA
15401365 GCCAAC
131 GCCAAC
15401371 ACATGGAACG
Statistics
Matches: 112, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
159 112 1.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
TGAGCAGACCGAAGAGGCATAATACGAAAGCCAAGGATCGACCCGGTCCCCCTCTGCTCACTGCC
AGTCCCACTGCCACAACCCACGATCTGACTGGGGCTTAGACATGGAATAAACTCACTATGCCTAA
GCCAACCCACAAAATGGGCGTACGGGTGC
Found at i:15401909 original size:26 final size:26
Alignment explanation
Indices: 15401871--15401920 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15401861 CCGATCTGAT
15401871 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15401897 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
15401921 GGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15402198 original size:158 final size:159
Alignment explanation
Indices: 15401897--15402325 Score: 440
Period size: 158 Copynumber: 2.7 Consensus size: 159
15401887 ACTCCGTATG
* * * * * * ** **
15401897 CTTAGACAT-GGAATGAACTCCGTAGGCCTAAGCCAACCCATGAAACAAGCG-TGTGGGTGCTCT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTAAGAAACGAGCGCT-CGGACGCTGA
* * * * * * * *
15401960 GCTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGT-CCCTCCCT-TCGTGCTGTCG
64 GCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCT-GCTAT-GTGCTATCG
* * * * *
15402023 ATCTTACTGCTGCAACCCTCAGTTCGGTCTGA-
127 ATCCTATTGCCGTAACCCTCACTTCGGTCTGAT
* * *
15402055 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CTGATGAAACGAGCGTTCGGATGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCT-AAGAAACGAGCGCTCGGACGCTGAG
* * * * * * *
15402119 TCGGCCGGATAGGCATAATGTGCAAGCC-GAGGATTGGCCCGATCCCCTGCTATGTGCTATCGAT
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCCTGCTATGTGCTATCGAT
15402183 CCTATTGCCGTAACCCTCACTTCGGTCTGAT
129 CCTATTGCCGTAACCCTCACTTCGGTCTGAT
*
15402214 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAAGAAATGAGCGCTCGGACGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAAGAAACGAGCGCTCGGACGCTGAGC
*
15402279 CGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCT
66 CGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCT
15402326 TTGCGTACTA
Statistics
Matches: 225, Mismatches: 37, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
157 3 0.01
158 118 0.52
159 101 0.45
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAAGAAACGAGCGCTCGGACGCTGAGC
CGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCTGCTATGTGCTATCGATCC
TATTGCCGTAACCCTCACTTCGGTCTGAT
Found at i:15402270 original size:159 final size:158
Alignment explanation
Indices: 15401963--15402325 Score: 437
Period size: 159 Copynumber: 2.3 Consensus size: 158
15401953 GTGCTCTGCT
* * * * * * *
15401963 GGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGT-CCCTCCCT-TCGTGCTGTCGATC
1 GGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCT-GCTAT-GTGCTATCGATC
* * * * *
15402026 TTACTGCTGCAACCCTCAGTTCGGTCTGACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
64 CTATTGCCGTAACCCTCACTTCGGTCTGACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
15402091 CTGATGAAACGAGCGTTCGGATGCTGAGTC
129 CTGAAGAAACGAGCGCTCGGACGCTGAGCC
* * * * * *
15402121 GGCCGGATAGGCATAATGTGCAAGCC-GAGGATTGGCCCGATCCCCTGCTATGTGCTATCGATCC
1 GGCCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCCTGCTATGTGCTATCGATCC
15402185 TATTGCCGTAACCCTCACTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
65 TATTGCCGTAACCCTCACTTCGGTCTGA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
*
15402250 CCT-AAGAAATGAGCGCTCGGACGCTGAGCC
129 -CTGAAGAAACGAGCGCTCGGACGCTGAGCC
*
15402280 GGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCT
1 GGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCT
15402326 TTGCGTACTA
Statistics
Matches: 172, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 1 0.01
158 68 0.40
159 100 0.58
160 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCTGCTATGTGCTATCGATCCT
ATTGCCGTAACCCTCACTTCGGTCTGACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACT
GAAGAAACGAGCGCTCGGACGCTGAGCC
Found at i:15402607 original size:159 final size:157
Alignment explanation
Indices: 15402223--15402821 Score: 440
Period size: 159 Copynumber: 3.8 Consensus size: 157
15402213 TCTTAGACTG
* * * * * * *
15402223 GGAATGAACTCCGTATGCCTAAGTCAACCTA-AGAAATGAGCGCT-CGGACGCTGAGCCGGTCAG
1 GGAATGAACTCCCTATGCCTAAGACAACCCACA-AAACGAGCG-TACGGGCGCTGAGCC-GACCG
* * * * * * *
15402286 AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCTT-TGCGTACTATCGATCCTACTACC
63 AGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGT-CCCTTCTGCGTGCTGTCGGTCCTGCTACC
* * * ** ** *
15402350 ATAACCCTCGGT-CTGATCCA-TTCTTGGACTA
127 ACAACCCTCAGTCCGGAT--AGGGCTTAAACAA
* ** * * ** * * * * *
15402381 GGAATCAAC-CTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGAGTGCTGAACCGATCGAAG
1 GGAATGAACTCCCTATGCCTAAGACAACCCACAAAACGAGCGTACGGGCGCTGAGCCGACCG-AG
* * * *
15402445 AGGCATAATGCACAAGCCAAGGATTGGCCCGATCCTCTTCTGCGTGCTGTCGGTCCTGCTACCAC
65 AGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCC-CTTCTGCGTGCTGTCGGTCCTGCTACCAC
* * *
15402510 AACTCTC-GATCCGGCTAGGGCTTAGACAA
129 AACCCTCAG-TCCGGATAGGGCTTAAACAA
* *
15402539 GGAATGAACTCCCTATGCCTAAGATAACCCACAAAACGTGCGTACGGGCGCTGAGCCGACCGATG
1 GGAATGAACTCCCTATGCCTAAGACAACCCACAAAACGAGCGTACGGGCGCTGAGCCGACCGA-G
* * * * ** *
15402604 AGGCATAATGCGCAAGCCGGGGATCCGCCCGGTCCCCCTT-TGCATACTGTCGGTCCCACTGCCA
65 AGGCATAATGCGCAAGCCAGGGATCGGCCCGGT--CCCTTCTGCGTGCTGTCGGTCCTGCTACCA
* *
15402668 CAACCCTCAGTCCGGATGGGGCTTAAACAT
128 CAACCCTCAGTCCGGATAGGGCTTAAACAA
* ** * * * *
15402698 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGACAACCCACAAAACGAGCGTACGGGCGCTGAGCCGACC-GAG
* * * * * *
15402763 AGGTAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCTCCTGCGTGTTGTCGATCCTGCT
65 AGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCTTCTGCGTGCTGTCGGTCCTGCT
15402822 GTCGCAACCC
Statistics
Matches: 345, Mismatches: 81, Indels: 30
0.76 0.18 0.07
Matches are distributed among these distances:
156 5 0.01
157 74 0.21
158 65 0.19
159 193 0.56
160 6 0.02
161 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCCTATGCCTAAGACAACCCACAAAACGAGCGTACGGGCGCTGAGCCGACCGAGA
GGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCTTCTGCGTGCTGTCGGTCCTGCTACCACAA
CCCTCAGTCCGGATAGGGCTTAAACAA
Found at i:15404279 original size:159 final size:158
Alignment explanation
Indices: 15404053--15404409 Score: 418
Period size: 159 Copynumber: 2.3 Consensus size: 158
15404043 TCGGTCTGAT
* * * * *
15404053 CTTAGAC-TGGAATAAACT-CGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGATGCTGAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACGGA-GCTGAGC
* * * * * *
15404116 CGACCGGA-GGGGCATAATGCATAAACCGAGGATTAGCCCAATCCCCCTCTACGTGTTG-CTGGT
65 CGACC-GATGAGGCATAATGCACAAACCGAGGATCAGCCCAATCCCCCTCTACATGCTGTC-GGC
* *
15404179 CCCGCTACCACAACCCTCGGTCCGATTAGGG
128 CCCACTACCACAACCCTCGATCCGATTAGGG
* *
15404210 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTACGG-GCGTCGAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACGGAGC-T-GAG
* * * * * *
15404274 TCGACCGATGAGGCATAATGCACAAGCCGAGGATCCGCTCGATCCCCCTCTGCATGCTGTCGGCC
64 CCGACCGATGAGGCATAATGCACAAACCGAGGATCAGCCCAATCCCCCTCTACATGCTGTCGGCC
* * *
15404339 CCACTGCCACAACCCTCGATCCGGTTGGGG
129 CCACTACCACAACCCTCGATCCGATTAGGG
15404369 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
15404410 GAAACGAGTG
Statistics
Matches: 170, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
157 9 0.05
158 13 0.08
159 147 0.86
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACGGAGCTGAGCC
GACCGATGAGGCATAATGCACAAACCGAGGATCAGCCCAATCCCCCTCTACATGCTGTCGGCCCC
ACTACCACAACCCTCGATCCGATTAGGG
Found at i:15404446 original size:159 final size:158
Alignment explanation
Indices: 15404053--15404489 Score: 402
Period size: 159 Copynumber: 2.8 Consensus size: 158
15404043 TCGGTCTGAT
* * * * * * *
15404053 CTTAGAC-TGGAATAAACT-CGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGATG-CT-GA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTACGG--GCCTCGA
* * * * * * * * * * *
15404114 GCCGACCGGAGGGGCATAATGCATAAACCGAGGATTAGCCCAATCCCCCTCTACGTGTTG-CTGG
64 GCCGACCGAAGAGGCAAAATGCACAAGCCGAGGAATCGCCCGAT-CCCCTCTGCATGCTGTC-GG
* * * *
15404178 TCCCGCTACCACAACCCTCGGTCCGATTAGGG
127 CCCCACTGCCACAACCCTCGATCCGATTAGGG
* * * *
15404210 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTACGGGCGTCGAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTACGGGCCTCGAGC
* * *
15404275 CGACCGATGAGGCATAATGCACAAGCCGAGG-ATCCGCTCGATCCCCCTCTGCATGCTGTCGGCC
66 CGACCGAAGAGGCAAAATGCACAAGCCGAGGAAT-CGCCCGAT-CCCCTCTGCATGCTGTCGGCC
* *
15404339 CCACTGCCACAACCCTCGATCCGGTTGGGG
129 CCACTGCCACAACCCTCGATCCGATTAGGG
* * *
15404369 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACT-TAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTACGGGC-CTCGAG
** ** * *
15404433 CCGGTCGAAGAGGCAAAATGTGCAAGCCGTGGAATGGCCCGATCCCCTCTGCATGCT
65 CCGACCGAAGAGGCAAAATGCACAAGCCGAGGAATCGCCCGATCCCCTCTGCATGCT
15404490 ACCGTAACCC
Statistics
Matches: 229, Mismatches: 43, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 8 0.03
158 26 0.11
159 191 0.83
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTACGGGCCTCGAGC
CGACCGAAGAGGCAAAATGCACAAGCCGAGGAATCGCCCGATCCCCTCTGCATGCTGTCGGCCCC
ACTGCCACAACCCTCGATCCGATTAGGG
Found at i:15405789 original size:158 final size:157
Alignment explanation
Indices: 15405282--15405932 Score: 573
Period size: 158 Copynumber: 4.1 Consensus size: 157
15405272 GCTTAAACAT
* ** **
15405282 GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAGCGAGCGTGCAGGG-GCTCAGTCGGTCAG
1 GGAATGAAC-TCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCGCTCAACCGACCAG
* * * * *** **
15405345 AGACGCAGAATGCGCAAGCTAGGGACCGACCC-AGTCCCCCCTGCGTGCTGTTGATCCCGCTGTC
64 AGAGGCAGAATGCGCAAGCCAGGGA-CGGCCCGA-TCCCCTCTGCGTGCTACCGATCCTACTGTC
* * *
15405409 GCAACCCTCGATCCAGTCCAATCTTAGACTG
127 GCAACCCTCGGTTCGGTCCAATCTTAGACTG
* * ** * * * *
15405440 GGAATGAACTCCA-TATGCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTGAATCGGCCGGA
1 GGAATGAACT-CAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGA
* * * * * * * *
15405504 GAGGCATAATGTGCAAGCCAGGGATCGGCCTGGTCCTCCTCTGCATGCTACCGGT-TTCACTGCC
65 GAGGCAGAATGCGCAAGCCAGGGA-CGGCCCGATCC-CCTCTGCGTGCTACCGATCCT-ACTGTC
* * * * * *
15405568 ACAATCCTC-GATCTGG-CTAGGTCTGAGACAT-
127 GCAACCCTCGGTTC-GGTCCA-ATCTTAGAC-TG
** * * *
15405599 GGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGGGCGTGCGGGCGCTCAACCAACCAGAG
1 GGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
* * *
15405664 AGGCAGAATGCGCAAGCCAGGGATCTGCCCGATCCCCACTGCGTGCTACCGATCCTGCTGTCGCA
66 AGGCAGAATGCGCAAGCCAGGGA-CGGCCCGATCCCCTCTGCGTGCTACCGATCCTACTGTCGCA
*
15405729 ACCCTCGGTTCGGTCTAATCTTAGACTG
130 ACCCTCGGTTCGGTCCAATCTTAGACTG
* * * * *
15405757 GGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGATCGGAG
1 GGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
* ** *
15405822 AGGCA-AAGTGCACAAGCCAGGGACAGGCCCGATCCCCTCTGCGTGCTGTCAATCCTACTGTCGC
66 AGGCAGAA-TGCGCAAGCCAGGGAC-GGCCCGATCCCCTCTGCGTGCTACCGATCCTACTGTCGC
* *
15405886 AACCCTCGGTTTGGTCCGATCTTAGACTG
129 AACCCTCGGTTCGGTCCAATCTTAGACTG
*
15405915 GGAATGAACTCCGTATGC
1 GGAATGAACTCAGTATGC
15405933 TTAGACTGGG
Statistics
Matches: 392, Mismatches: 85, Indels: 32
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.02
158 264 0.67
159 119 0.30
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
AGGCAGAATGCGCAAGCCAGGGACGGCCCGATCCCCTCTGCGTGCTACCGATCCTACTGTCGCAA
CCCTCGGTTCGGTCCAATCTTAGACTG
Found at i:15405935 original size:26 final size:26
Alignment explanation
Indices: 15405906--15405958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15405896 TTGGTCCGAT
15405906 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15405932 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15405958 C
1 C
15405959 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15406016 original size:158 final size:159
Alignment explanation
Indices: 15405849--15406148 Score: 424
Period size: 159 Copynumber: 1.9 Consensus size: 159
15405839 CAGGGACAGG
* * * *
15405849 CCCGATCCCCTCTGCGTGCTGTCAATCCTACTG-TCGCAACCCTCGGTTTGGTCCGATCTTAGAC
1 CCCGATCCCCCCTACGTGCTGTCAATCCTACTGCT-GCAACCCTCGGTCTGATCCGATCTTAGAC
* **
15405913 T-GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
65 TAAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACACCTAAGTCAACCCATGAAA
15405977 CAAGCGTATGGGCGTTCAGTCGGGGATCGA
130 CAAGCGTATGGGCGTTCAGTCGGGGATCGA
* * * * * *
15406007 CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGTAACCTTCGGTCTGATCTGATCTTAGACT
1 CCCGATCCCCCCTACGTGCTGTCAATCCTACTGCTGCAACCCTCGGTCTGATCCGATCTTAGACT
* *
15406072 AAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTACACCTAAGTCAACCCATGAAAC
66 AAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACACCTAAGTCAACCCATGAAAC
* *
15406137 GAGCGTGTGGGC
131 AAGCGTATGGGC
15406149 ACTCAGTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 53 0.43
159 70 0.57
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (159 bp):
CCCGATCCCCCCTACGTGCTGTCAATCCTACTGCTGCAACCCTCGGTCTGATCCGATCTTAGACT
AAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACACCTAAGTCAACCCATGAAAC
AAGCGTATGGGCGTTCAGTCGGGGATCGA
Found at i:15406762 original size:159 final size:159
Alignment explanation
Indices: 15406472--15407112 Score: 430
Period size: 159 Copynumber: 4.0 Consensus size: 159
15406462 ATTTCATATG
** * * * *
15406472 CTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
* ** * * *
15406537 CGATTGGAGAGGCAGAATGCGCAAGCCGAGGACGGGCCCGGTCCCCCCCTCCGTGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGACGAACCCGATCCCCACCTCCATGCTGTCGATCC
15406602 TGCTGTCGCAACCTTCGATCCAGTTTGAT
131 TGCTGTCGCAACCTTCGATCCAGTTTGAT
* *
15406631 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* * *
15406695 CCGATCGGAGAGGCATAATGCGCAAGCCGAGGATC-AACCCGATCCCCATCTGCATGCTGTC-AG
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGA-CGAACCCGATCCCCACCTCCATGCTGTCGA-
* * * * * * **
15406758 TCCTGCT-AC-CATAGCCCTCGGGTTCGGTTGGGG
128 TCCTGCTGTCGCA-A-CCTTC-GATCCAGTTTGAT
* * * * * * * ** *
15406791 CTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGGTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
* * * * * * * * * * **
15406856 CGA-CTGGAGAGGTAGAATGCACGAGTCGGGGATC-TACCCGGT-CCCTCCTACGTGCTACCGAT
66 CGATC-GGAGAGGCAGAATGCGCAAGCCGAGGA-CGAACCCGATCCCCACCTCCATGCTGTCGAT
* ** * * *
15406918 CCTACTGTTACAACCCTCGATCCGGTTCGAT
129 CCTGCTGTCGCAACCTTCGATCCAGTTTGAT
* * * **
15406949 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* * * * ** * * * *
15407013 -CTAGCCAGAGAGGTAGAATGCATAAGCC-AGGTAC-AAGCTCGGTCCCC-CCTACATGCTATCG
65 CCGA-TCGGAGAGGCAGAATGCGCAAGCCGAGG-ACGAA-CCCGATCCCCACCTCCATGCTGTCG
* *
15407074 ATCCTGCTGTCGCAACC-TC-AGTCCGGTCTGAT
127 ATCCTGCTGTCGCAACCTTCGA-TCCAGTTTGAT
15407106 CTTAGAC
1 CTTAGAC
15407113 TGGGAATAAA
Statistics
Matches: 381, Mismatches: 83, Indels: 38
0.76 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 27 0.07
158 115 0.30
159 142 0.37
160 93 0.24
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGAGGACGAACCCGATCCCCACCTCCATGCTGTCGATCC
TGCTGTCGCAACCTTCGATCCAGTTTGAT
Found at i:15407155 original size:26 final size:26
Alignment explanation
Indices: 15407106--15407158 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15407096 CCGGTCTGAT
*
15407106 CTTAGACTGGGAATAAACTTTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* **
15407132 CTTAGACTGGGGATGGACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
15407158 C
1 C
15407159 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:15407213 original size:157 final size:157
Alignment explanation
Indices: 15407052--15407354 Score: 437
Period size: 158 Copynumber: 1.9 Consensus size: 157
15407042 GGTACAAGCT
* *
15407052 CGGTCCCCCCTACATGCTATCGATCCTGCTGTCGCAA-CCTCAGTCCGGTCTGATCTTAGACTGG
1 CGGTCCCCCCTACATGCTATCGATCCTGCTGTCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
* * * * *
15407116 GAATAAACTTTGTATGCTTAGACTGGGGATGGACTCTGTATGCCTAAGTCAACCCAAGAAATGAG
66 GAATAAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAG
*
15407181 CGTATGGGTGCTCAACCGGGGATCGGTC
131 -GTATGGGCGCTCAACCGGGGATCGGTC
* * * * * *
15407209 CGGTCCCCCTTACGTGCTATCGATCTTGCTGTTGTAACCCTCGGTCCGATCCGATCTTAGACTGG
1 CGGTCCCCCCTACATGCTATCGATCCTGCTGTCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
* *
15407274 GAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
66 GAATAAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAG
*
15407339 GTGTGGGCGCTCAACC
131 GTATGGGCGCTCAACC
15407355 AGCCAGAGAG
Statistics
Matches: 128, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
157 46 0.36
158 82 0.64
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (157 bp):
CGGTCCCCCCTACATGCTATCGATCCTGCTGTCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
GAATAAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAG
GTATGGGCGCTCAACCGGGGATCGGTC
Found at i:15407315 original size:26 final size:26
Alignment explanation
Indices: 15407264--15407316 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15407254 CCGATCCGAT
*
15407264 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15407290 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15407316 C
1 C
15407317 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15407481 original size:26 final size:26
Alignment explanation
Indices: 15407445--15407497 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15407435 CCGGTCTGAT
15407445 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15407471 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15407497 C
1 C
15407498 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15408044 original size:26 final size:26
Alignment explanation
Indices: 15408008--15408060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15407998 CCGGTCTGAT
* *
15408008 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15408034 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15408060 C
1 C
15408061 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15409074 original size:159 final size:159
Alignment explanation
Indices: 15408728--15409221 Score: 467
Period size: 159 Copynumber: 3.1 Consensus size: 159
15408718 GGCTCAAAAT
* * * * * * * *
15408728 CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAAC
1 CTTAGACTAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * * * * *
15408793 TGGCTGAAGAGGCAGAATGCGTAAGCCAGGGATGGGCCCGAT-CCCC-CTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
15408856 TATTGTCGCAACCCTTGGTCCAGTCTAAT
131 TGTTGCCGCAACCCTCGGTCCAGACTAAG
** * * * * * *
15408885 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCATCCCACGAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * * * *
15408950 TGACCGAAGAGGCATAATGAGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
15409015 CGCTGCCACAACCCTCGGTCC-GACTAGGG
131 TGTTGCCGCAACCCTCGGTCCAGACTA-AG
* * * * *
15409044 CTTAGAC-ATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAA
1 CTTAGACTA-GGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * ** *
15409108 CCGACCGAAGAGGCAGAATGCGTAAGTCGAGGATCGGCTTGGTCCCCCT-TGCGTGCTGCCGATC
65 CCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* ** * *
15409172 CTGTTGCCGCAACCCTCGATCCAGTTTGAT
130 CTGTTGCCGCAACCCTCGGTCCAGACTAAG
*
15409202 CTTAGACTGGGAATGAACTC
1 CTTAGACTAGGAATGAACTC
15409222 TGTATGCTTA
Statistics
Matches: 268, Mismatches: 63, Indels: 11
0.78 0.18 0.03
Matches are distributed among these distances:
157 86 0.32
158 59 0.22
159 123 0.46
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
CGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGTTGCCGCAACCCTCGGTCCAGACTAAG
Found at i:15409238 original size:26 final size:26
Alignment explanation
Indices: 15409202--15409253 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15409192 CCAGTTTGAT
* *
15409202 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
15409228 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15409254 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:15410744 original size:158 final size:156
Alignment explanation
Indices: 15410477--15410930 Score: 495
Period size: 159 Copynumber: 2.9 Consensus size: 156
15410467 TCCAGCTGGG
* * * * *
15410477 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * * * * *
15410542 CCCGTCGGAGAGGCAGAATGCACAAGCCGGGGATCATCTTGGTCCCTCCTACGTGCTGTCGATCC
66 TCGGACGGAGAGGCA-AATGCACAAGCCGGGGATCAGCCTGGTCCC-CCTGCGTGCTGTCGATCC
15410607 TACTGCCACAACCCAAGGTCCGGTCT-GA
129 TACTGCCACAACCCAAGGTCCGG-CTAGA
* * * * * *
15410635 TCTTGGA-ATGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGA
* *
15410699 GTCGGACGGAGAGGCATAATGCACAAGCCGAGGATC-GACCCGGTCCCCCTTTGCGTGCTG-CTG
65 GTCGGACGGAGAGGCA-AATGCACAAGCCGGGGATCAG-CCTGGTCCCCC--TGCGTGCTGTC-G
** ** * *
15410762 ATCCCGCTGCCACAACCCTCGGTTCGGCTAGG
125 ATCCTACTGCCACAACCCAAGGTCCGGCTAGA
* *
15410794 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTG-GCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTGA
* **
15410858 GTCGGCCGGAGAGGCGAAATGTGCAAGCCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATC
65 GTCGGACGGAGAGGC-AAATGCACAAGCCGGGGATCAGCCTGGT-CCCCCTGCGTGCTGTCGATC
15410923 CTACTGCC
128 CTACTGCC
15410931 GTAACCCTCG
Statistics
Matches: 243, Mismatches: 41, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
157 4 0.02
158 110 0.45
159 118 0.49
160 11 0.05
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAG
TCGGACGGAGAGGCAAATGCACAAGCCGGGGATCAGCCTGGTCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCAAGGTCCGGCTAGA
Found at i:15410832 original size:159 final size:155
Alignment explanation
Indices: 15410455--15410943 Score: 518
Period size: 158 Copynumber: 3.1 Consensus size: 155
15410445 TCTTACCGAT
* * *
15410455 CACAACTCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
1 CACAACCCTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * * * *
15410520 AAACGAGTGTGTGGGTGCTGAGCCCGTCGGAGAGGCAGAATGCACAAGCCGGGGATCATCTTGGT
65 AAATGAGCGTGCGGGCGCTGAGTCGGACGGAGAGGCA-AATGCACAAGCCGGGGATCAGCCTGGT
*
15410585 CCCTCCTACGTGCTGTCGATCCTACTGC
129 CCC-CCTGCGTGCTGTCGATCCTACTGC
** ** * * *
15410613 CACAACCCAAGGTCCGGTCTGATCTTGGA-ATGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
1 CACAACCCTCGGTCCGG-CTGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * *
15410677 GAAATGAGCGTACGGGCACTGAGTCGGACGGAGAGGCATAATGCACAAGCCGAGGATC-GACCCG
64 GAAATGAGCGTGCGGGCGCTGAGTCGGACGGAGAGGCA-AATGCACAAGCCGGGGATCAG-CCTG
**
15410741 GTCCCCCTTTGCGTGCTG-CTGATCCCGCTGC
127 GTCCCCC--TGCGTGCTGTC-GATCCTACTGC
* *
15410772 CACAACCCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * **
15410837 AAACTG-GCGTGCGGGCGCTCAGTCGGCCGGAGAGGCGAAATGTGCAAGCCGGGGATCAGCCTGG
65 AAA-TGAGCGTGCGGGCGCTGAGTCGGACGGAGAGGC-AAATGCACAAGCCGGGGATCAGCCTGG
15410901 TCCCCCCTGCGTGCTGTCGATCCTACTGC
128 T-CCCCCTGCGTGCTGTCGATCCTACTGC
**
15410930 CGTAACCCTCGGTC
1 CACAACCCTCGGTC
15410944 TGATTCGATC
Statistics
Matches: 269, Mismatches: 49, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
157 4 0.01
158 134 0.50
159 120 0.45
160 11 0.04
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (155 bp):
CACAACCCTCGGTCCGGCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AATGAGCGTGCGGGCGCTGAGTCGGACGGAGAGGCAAATGCACAAGCCGGGGATCAGCCTGGTCC
CCCTGCGTGCTGTCGATCCTACTGC
Found at i:15411715 original size:26 final size:26
Alignment explanation
Indices: 15411677--15411729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15411667 GGCTCAAAAT
** *
15411677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
15411703 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
15411729 C
1 C
15411730 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:15412065 original size:159 final size:157
Alignment explanation
Indices: 15411702--15412203 Score: 418
Period size: 159 Copynumber: 3.2 Consensus size: 157
15411692 AACTCCGTAT
* * * *
15411702 GCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCTCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * * * *
15411767 CTGGCC-AGAGAGGTAGAATGCGCAAGCCAGAGATCGGCCCGGTCCCCCCTGCGTGCTTTGATCC
66 CCGACCGA-AGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGGTCCCCCCTGCGTACTTCGATCC
*** * * **
15411831 TGCTGTTGCAACCCTCGGTCTGGTTCGA
130 TGCTGCCACAACCCTCGATCCGACTCGA
* * * * * * *
15411859 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCA
* * * * * * *
15411923 GCCGACCGAAGAGGCATAATGTGCAAGGCGGGGATCGGCTCGGTCCCCCTCTGCGTACTGTCGGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGGTCCCCC-CTGCGTACT-TCGAT
* *
15411988 CCTGCTGCCACAACCCTCGATCCGACTGGG
128 CCTGCTGCCACAACCCTCGATCCGACTCGA
* * * *
15412018 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * * * * * * * * * * *
15412083 TCGATCGGAGAGGCAGATTGCGTAAGCC-GAGGATCGACCTGATCCCTCCTACATGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGA-GATCGGCCCGGTCCCCCCTGCGTACT-TCGATC
* * * *
15412147 CTGCTGACGCAACCCTCGGTCCGATTCGA
129 CTGCTGCCACAACCCTCGATCCGACTCGA
* * *
15412176 TCGTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
15412204 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 68, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
157 92 0.34
158 68 0.25
159 109 0.40
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGGTCCCCCCTGCGTACTTCGATCCT
GCTGCCACAACCCTCGATCCGACTCGA
Found at i:15412208 original size:26 final size:26
Alignment explanation
Indices: 15412179--15412229 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15412169 GATTCGATCG
*
15412179 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
15412205 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
15412230 CTAAGCCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:15412683 original size:177 final size:176
Alignment explanation
Indices: 15412425--15412752 Score: 419
Period size: 177 Copynumber: 1.9 Consensus size: 176
15412415 TTGCAAATCC
* * * *
15412425 TGCTACCATAACCCTCAGACCGGTCGATCTTAGATTGAGAATGAATTCCGTATGCTCAGACTAGG
1 TGCTACCACAACCCTCAGACCGGTCGATCTTAGATAGAGAATGAACTCCATATGCTCAGACTAGG
* *
15412490 GATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGTGCAGG-CGCTCAACCGATCGA-AG
66 GATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGC-GGACGCTCAACCGA-CGAGAG
15412553 AGGCAGAATGCGCAAGTCGAGGATCGGCCTGGTCCCCACTACGTGTCT
129 AGGCAGAATGCGCAAGTCGAGGATCGGCCTGGTCCCCACTACGTGTCT
* * * * * *
15412601 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAG-GAGTGAACTCCATATGCTTAGACTG
1 TGCTACCACAACCCTCAGACCGGT-CGATCTTAGA-TAGAGAATGAACTCCATATGCTCAGACTA
* * * * *
15412665 GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACGCTCAGCCGACTAGAG
64 GGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGACGCTCAACCGACGAGAG
* * *
15412730 AGGTAGGATGCGCAATTCGAGGA
129 AGGCAGAATGCGCAAGTCGAGGA
15412753 CTAGCTCGAT
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
176 24 0.19
177 102 0.80
178 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (176 bp):
TGCTACCACAACCCTCAGACCGGTCGATCTTAGATAGAGAATGAACTCCATATGCTCAGACTAGG
GATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGACGCTCAACCGACGAGAGAG
GCAGAATGCGCAAGTCGAGGATCGGCCTGGTCCCCACTACGTGTCT
Found at i:15412957 original size:159 final size:158
Alignment explanation
Indices: 15412656--15413157 Score: 408
Period size: 159 Copynumber: 3.2 Consensus size: 158
15412646 ACTCCATATG
* * ** * * * *
15412656 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAC-GAGCATGCGGACGCTCAG
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGCGCTCAA
* ** * * * ** * * * *
15412720 CCGACTAGAGAGGTAGGATGCGCAATTCGAGGA-CTAGCTCGATCCCCTTTTGCGTGCTGTCGAT
65 CCGGCCGGAGAGGCAGAATGTGCAAGCCAAGGATC-GGCCCGATCCCC-CTTGCGTGCTGTCGAT
* *
15412784 CCTGCTGTCGCAACCCTCGGTCTGGTCT-AAT
128 CCTGCTG-CGCAACCCTCGGTCCGGTCTCGAT
* * * *
15412815 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAAC-GAGCGTTCAGGG-GCTGA
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGA-CGTGC-GGGCGCTCA
* *** * *
15412878 ACCGGCCGGAGAGGCATAATGTGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCCTGCTGTCGGT
64 ACCGGCCGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGATCCCCCT-TGCGTGCTGTCGAT
* * * * * **
15412943 CCCGTTGCGACAACCATCGGTCCAG-CTGGGG
128 CCTGCTGCG-CAACCCTCGGTCCGGTCTCGAT
* * * * *
15412974 CTCAGAC-ATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCTCTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAA
* * * *
15413038 CTGGCTGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGGTCCCCCTTGTGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCC
15413103 TGCTGCTGCAACCCTCGGTCCGGT-TCGAT
130 TGCTGC-GCAACCCTCGGTCCGGTCTCGAT
* *
15413132 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15413158 ATTAGACATG
Statistics
Matches: 267, Mismatches: 65, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
158 61 0.23
159 201 0.75
160 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCT
GCTGCGCAACCCTCGGTCCGGTCTCGAT
Found at i:15413287 original size:184 final size:185
Alignment explanation
Indices: 15412977--15413737 Score: 683
Period size: 184 Copynumber: 4.0 Consensus size: 185
15412967 GCTGGGGCTC
* * * * *
15412977 AGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCTCTCAG-CT
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-TGTGCGGGCGCTCAGAC-
* * * * * *
15413040 G-GCTGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGGTCCCCCTTGTGTGCTGTCGATCCT
64 GAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* *
15413104 GCTGCTGCAACCCTCGGTCCGGT-TCGATCTTAGATTGGGAATGAACTCCATATGATT
129 GCTGCTGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCATATGCTT
* *
15413161 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGCACTCAGAC-A
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGACGA
* ** *
15413225 ACCGGAGAGGCAGAATGCGTAAGCCAAGGATCTACCCGATCCCCCCTGCGTGCTGCCGATCCTGC
66 ACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGC
** * * * * *
15413290 TGCCACAACCCTCAGTCCAGT-TAGATCTTAGACTGAGAATAAACTCCGTATGCTT
131 TGCTGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCATATGCTT
* * **
15413345 AGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAGTGAGTGTGCGGGCGCTCAGCCA
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG--A
* ** * * * *
15413409 GCAGGAGAGGTCGACCAGAGAGGCAGAATATGCAAGCCAGGGATTGGCCCGGTCCTCCCTGCGTG
63 -C----GA-----ACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTGCGTG
* *
15413474 CTGTCGATCCTGCTGCTGGTGCTACTGCCACAACCCTAGGTTCGGTCTGATCTTAAGACTGGGAA
118 CTGTCGAT-C--CTGC---TG---CTG---CAACCCTCGGTCCGGTCTGATCTT-AGACTGGGAA
*
15413539 TGAACTCCGTATGCTT
170 TGAACTCCATATGCTT
* * * *
15413555 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGTGTACGGGCGCTCAGCCG-
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGACGA
* * *** * * * *
15413619 ATCGAAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGATCCTTCCCTACGTGCTGTTGATCCTG
66 ACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCC-CCCCTGCGTGCTGTCGATCCTG
* * *
15413684 CTACTGCAACCCTCGGTCTGGTCTGATCTTATACTGGGAATGAACTCCATATGC
130 CTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
15413738 CTAAGTCAAC
Statistics
Matches: 469, Mismatches: 75, Indels: 65
0.77 0.12 0.11
Matches are distributed among these distances:
183 1 0.00
184 206 0.44
185 24 0.05
186 22 0.05
187 1 0.00
189 3 0.01
192 2 0.00
195 4 0.01
197 82 0.17
198 17 0.04
200 4 0.01
203 3 0.01
206 1 0.00
207 1 0.00
209 18 0.04
210 79 0.17
211 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (185 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGACGA
ACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGC
TGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT
Found at i:15413360 original size:26 final size:26
Alignment explanation
Indices: 15413316--15413368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15413306 CCAGTTAGAT
15413316 CTTAGACTGAGAATAAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
* * *
15413342 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
15413368 C
1 C
15413369 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:15414399 original size:184 final size:186
Alignment explanation
Indices: 15414209--15414789 Score: 530
Period size: 197 Copynumber: 3.0 Consensus size: 186
15414199 TCCGACTGGG
* *
15414209 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * *
15414274 A-CAACCGGAGAGGCAGAATGTGCAAGCCAAGGATCTACCCGATCCCCCCTGCGTGCTGCCGATC
66 ACCAACCGGAGAGGCAGAATGTGCAAGCCAGGGATCTACCCGATCCTCCCTGCGTGCTGTCGATC
* *
15414338 CTGCTGCCACAACCCTCAGTCCAGT-TAGATCTTAGACTGAGAATAAACTCCGTAT
131 CTGCTGCCACAACCCTCAGTCCAGTCTAGATCTTAGACTGGGAATGAACTCCGTAT
* * **
15414393 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAGTGAGTGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
* * * * * *
15414457 GCCAGCAGGAGAGGTCGACCAGAGAGGCAGAATATGCAAACCAGGGAT-TGGCCCGGTCCTCCCT
65 G--A-C---------CAACCGGAGAGGCAGAATGTGCAAGCCAGGGATCT-ACCCGATCCTCCCT
* *
15414521 GCGTGCTGTCGATCCTGCTGCTGGTGCTACTGCCACAACCCT-AGGTTCGGTCT-GATCTTAAGA
117 GCGTGCTGTCGA---T-C--C---TG---CTGCCACAACCCTCA-GTCCAGTCTAGATCTT-AGA
15414584 CTGGGAATGAACTCCGTAT
168 CTGGGAATGAACTCCGTAT
* *
15414603 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * * * * * *
15414667 ACCGACCGGAGAGGTAGAATGCGCAAGTCGGGGACCGATCGGATCCTTCCCTGCGTGCTGTCGAT
66 ACCAACCGGAGAGGCAGAATGTGCAAGCCAGGGATCTACCCGATCC-TCCCTGCGTGCTGTCGAT
* * * * *
15414732 CCTGCTGTCGCAGCCCTCAGTCCAATCCA-ATCTTAGACTGGGAATGAACTCCGTAT
130 CCTGCTGCCACAACCCTCAGTCCAGTCTAGATCTTAGACTGGGAATGAACTCCGTAT
15414788 GC
1 GC
15414790 CTAAGTCAAC
Statistics
Matches: 317, Mismatches: 45, Indels: 69
0.74 0.10 0.16
Matches are distributed among these distances:
183 1 0.00
184 57 0.18
185 24 0.08
186 21 0.07
187 1 0.00
189 2 0.01
192 1 0.00
194 1 0.00
195 1 0.00
196 1 0.00
197 80 0.25
198 17 0.05
200 1 0.00
201 1 0.00
203 1 0.00
206 3 0.01
207 1 0.00
208 1 0.00
209 24 0.08
210 77 0.24
211 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (186 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
ACCAACCGGAGAGGCAGAATGTGCAAGCCAGGGATCTACCCGATCCTCCCTGCGTGCTGTCGATC
CTGCTGCCACAACCCTCAGTCCAGTCTAGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15414412 original size:26 final size:26
Alignment explanation
Indices: 15414368--15414420 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15414358 CCAGTTAGAT
15414368 CTTAGACTGAGAATAAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
* * *
15414394 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
15414420 C
1 C
15414421 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:15415646 original size:26 final size:26
Alignment explanation
Indices: 15415610--15415662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15415600 TCGGTCTGAT
*
15415610 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCATATG
* *
15415636 CTTAGTCTGGGGATGAACTCCATATG
1 CTTAGGCTGGGAATGAACTCCATATG
15415662 C
1 C
15415663 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCATATG
Found at i:15415669 original size:27 final size:26
Alignment explanation
Indices: 15415616--15415669 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15415606 TGATCTTAGG
* *
15415616 CTGGGAATGAACTCCGTATGCTTAGT
1 CTGGGAATGAACTCCATATGCTAAGT
*
15415642 CTGGGGATGAACTCCATATGCGTAAGT
1 CTGGGAATGAACTCCATATGC-TAAGT
15415669 C
1 C
15415670 AACCCATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
CTGGGAATGAACTCCATATGCTAAGT
Found at i:15415870 original size:26 final size:26
Alignment explanation
Indices: 15415819--15415871 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15415809 CTGGTTCGAT
* *
15415819 CTTAGACTGGGAATGAACCCTGTATG
1 CTTAGACTGCGAATGAACCCTATATG
*
15415845 CTTAGACTTCGAATGAACTCC-ATATG
1 CTTAGACTGCGAATGAAC-CCTATATG
15415871 C
1 C
15415872 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACCCTATATG
Found at i:15416295 original size:26 final size:26
Alignment explanation
Indices: 15416266--15416318 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15416256 CCGGTCTGAT
*
15416266 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
15416292 CTTAGACTAGGGATGAGCTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15416318 C
1 C
15416319 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15416500 original size:26 final size:26
Alignment explanation
Indices: 15416462--15416514 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15416452 CTGGTCTAAT
15416462 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15416488 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15416514 C
1 C
15416515 ATAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15416792 original size:159 final size:158
Alignment explanation
Indices: 15416488--15416891 Score: 343
Period size: 159 Copynumber: 2.5 Consensus size: 158
15416478 ACTCCGTATG
*
15416488 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAAC
* * * * * *
15416553 CGACCGGAGAGGTAGAATGCGCAAGTCGGGGACCGATCGGATCCTTCCCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCACAAGTCGAGGACAGACCGGATCC-TCCCTGCGTGCTGTCGATCC
* * * *
15416618 TGCTGTCGCAGCCCTCAGTCCAATCCAAT
130 CGCTGCCACAACCCTCAGTCCAATCCAAT
* * ** * *
15416647 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGAGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAA
* * * * *
15416711 CCGGCTGAAGAGGCATAATGCATAAGTCGAGGATCAG-CCTGATCC-CCCTTTGCGTGCTGTCGG
65 CCGACCGAAGAGGCAGAATGCACAAGTCGAGGA-CAGACCGGATCCTCCC--TGCGTGCTGTC-G
* ** ****
15416774 A-CCCGCTGCCACAACCCTCGGTCC-GGCTGGGG
126 ATCCCGCTGCCACAACCCTCAGTCCAATC-CAAT
* ** * * * *
15416806 CTTAGACATGGAATGAACTCAC-TATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCATAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAA
* * *
15416870 CTGGCCGGAGAGGCAGAATGCA
65 CCGACCGAAGAGGCAGAATGCA
15416892 TAAGCTGGGG
Statistics
Matches: 195, Mismatches: 42, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 2 0.01
159 184 0.94
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAAC
CGACCGAAGAGGCAGAATGCACAAGTCGAGGACAGACCGGATCCTCCCTGCGTGCTGTCGATCCC
GCTGCCACAACCCTCAGTCCAATCCAAT
Found at i:15417420 original size:26 final size:26
Alignment explanation
Indices: 15417382--15417433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15417372 GGCCCAAACT
15417382 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15417408 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15417434 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15417594 original size:26 final size:26
Alignment explanation
Indices: 15417565--15417617 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15417555 TCCAGTTTGA
15417565 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
15417591 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
15417617 C
1 C
15417618 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15418807 original size:26 final size:26
Alignment explanation
Indices: 15418768--15418818 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15418758 GATCCGATCT
*
15418768 TAGACTGGGAATGAACTCTGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
15418794 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15418819 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:15418810 original size:698 final size:697
Alignment explanation
Indices: 15417381--15420239 Score: 2537
Period size: 698 Copynumber: 4.1 Consensus size: 697
15417371 TGGCCCAAAC
*
15417381 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
15417446 CACGAAATGAGCGTACGGGCGCTCAGTCGGCTGGAGAGGCAGAATGCGCAA-CCCAGGGACCGGC
66 CACGAAACGAGCGTACGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGA-GGATCGAC
* * * * *
15417510 CCGATCCCCCCTGCATGCTACCGAT-C--CTGCT-G--C--C-A--CATCCCTCGA-TCCAGTTT
130 TCGATCCCCCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTACGCAACCCTCGAGTCCAGTCT
*
15417563 GA-CTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
195 GATCTTAGACTGGGAATGAACT-CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15417627 CCCACGAAACGAGCGTACGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGG-GACCA
259 CCCACGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGAGATCG
* * * * * * **
15417691 CCCCAGTCCCCTCCTACGTGTTATTGATCCTGCTGCCGCAACACTCTATCCGGTCTGATCTTAGA
324 GCCCGGTCCCC-CCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * *
15417756 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAAATGAGCGTTCGGGCGCTGAGCTAGCC
388 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTTCGGGCGCTGAGCCAGCC
* * * * * ** *
15417821 GAAGGGGCATAATGCCCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGATGTCAGTCCCGCTG
452 GAAGAGGCATAATGCACAAGCCGGGGATCAGCCTGATCCCCCTCTGCATGCTACCGGTCCCGCTG
15417886 CCACAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
517 CCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* ** * * *
15417950 TGAAACGGGCGTGTGGGCGCTCAGTCGACGGGAGATACCGGCCGGAGATGCATAATGCGCAAG-T
581 CGAAACGGGCGTACGGGCG----G-C-TC-----A-ACCGGCCGGAGAGGCAGAATGCGCAAGCT
* * * * *
15418014 CGGGGATCAGCTCGGTCCCCTTCTGCATGCTACCAAT-CTCGC-T-G----CT-GGTCCTGCTAC
634 -AGGGATCAGCTCGGTCCCCATCTGCATGCTGCCGATCCT-GCTTCGCACCCTCGGTCC-GAT-C
15418071 C-A
695 CGA
* ** * ** **
15418073 -C-AACCCT-CG-ATCCG-ACT---TGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAA
1 TCTTAGACTGGGAAT--GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
15418130 CCCACGAAACGAGTGTGTGGGCGCTTAGCCGACTGGAGAGCCAGAATGCGTAAGCCGAGGATCGA
64 CCCACGAAACGAGCGTACGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
*
15418195 CTCGATCCCCCACTACGTGCTACCGATCCTACTGCTGGTCCTGCTATCGCAACCCTCGA-TCCCA
129 CTCGATCCCCC-CTACGTGCTACCGATCCTGCTGCTGGTCCTGCTA-CGCAACCCTCGAGT-CCA
* *
15418259 -TCTGATCTTAGATTGGGAATGAATTCGGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
191 GTCTGATCTTAGACTGGGAATGAACTC-GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * ** * *
15418323 CCAACCCATGAAACAAGTGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGTAAGCC-GGAG
255 CCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGAG
* * * * * **
15418387 ATCGGCCTGGTCCCCCCTACGTGCTGTCGATCTTACTACCGCAACCTTCGGTTTGGTCTGATCTT
320 ATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTT
* * * * *
15418452 AGACTGGGAATGAACTCCGTATGCTTAAGTCAACCTATGAAACGAGCGTGCAGGCGCTGAGCC-G
385 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCAG
* * * * * * *
15418516 ACCGAAGGGGCACAACGCGCAAGCTGGCGATCAGCGC-GATCCCCCTCTACATGCTACCGGTCCC
450 -CCGAAGAGGCATAATGCACAAGCCGGGGATCAGC-CTGATCCCCCTCTGCATGCTACCGGTCCC
* * *
15418580 GTTGCCACAACCCTCGGTCCGACTGCGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAAC
513 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
*
15418645 CCACGAAACGGGCGTACGGG-GGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCAG
578 CCACGAAACGGGCGTACGGGCGGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCAG
* * *
15418709 CTCTGTCCCC-TCTGCGTGCTGTCGATCCTGCTTTCGCCACCCTCGGTCCGATCCGA
643 CTCGGTCCCCATCTGCATGCTGCCGATCCTGC-TTCG-CACCCTCGGTCCGATCCGA
* * * *
15418765 TCTTAGACTGGGAATGAACTCTGTATGCATAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * * *
15418829 CCATGAAACGAGCGTGCAGGTGCTCAACCAACTAGAGAGGTAGAATGCGCAAGCCGGGGAT-GGC
65 CCACGAAACGAGCGTACGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* ** ** * * * *
15418893 TCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTGCTAGTCCTGCTACTGTAACCCTC-AGTTCGGT
130 TCGAT-CCCCCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTAC-GCAACCCTCGAGTCCAGT
* *
15418957 CTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATAGAATGAACTTCGTATGCCTAAGCC
193 CTGATCTTAGACTGGGAATGAACTC-GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
15419022 AACCCATGGAACGAGCATGCGGGGGCTCAACCGACCGGA-AGGCAGAATGCACAAGCCAAGGACA
257 AACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCC-AGG--A
* * * * * * *
15419086 GA-C--CCCGTTCCCCCTTGCATGCTGTCGATCCTGCTATCGAAACCCTCGGTCCGGTCCTGATC
319 GATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGGT-CTGATC
* * * *
15419148 TTAGATTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTACGGGCACTGAGCC
383 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCC
** * *
15419213 AGCC-AGAGAGGCATAATGCACAAGCCGGGGATCAGCCTGATCCCCCTCTGTGTGCTACTGGTGC
448 AGCCGA-AGAGGCATAATGCACAAGCCGGGGATCAGCCTGATCCCCCTCTGCATGCTACCGGTCC
* * * * * * * * *
15419277 CACTACCCCAACCCTCGATCTGGCTAGGGCTTAGGCATGGAATGAACTCTCTATGCCTAAGCCAA
512 CGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
15419342 CCCATGAAATGGGCATGCGGGCGG-TCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCG
577 CCCACGAAACGGGCGTACGGGCGGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCA
* * * * * *
15419406 GCCCGGTCCCCAT-TGCACGCTGCCGATCCTGCTGTCGCAACCCTCAGTCTGGTTCGA
642 GCTCGGTCCCCATCTGCATGCTGCCGATCCTGCT-TCGC-ACCCTCGGTCCGATCCGA
* * * * *
15419463 TCTTTGACTGGGAATGAACTCCGTATACTTAGAC-TAGGGATGAACTCTGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * **
15419527 CCACAAAACAAGCAG-ACGGGCGCTCAACCAGCCGAAGAGGCTGGCCGAAGAGGCAGAATACTTA
65 CCACGAAACGAGC-GTACGGGCGCT----CAGCC---GA--CT-G--G-AGAGGCAGAATGCGCA
** * * * *
15419591 AGTTGAGGATCGAC-CCAGTCCCCCCTACGTGCTACCGATCCTGCTACTGGTTCTGCTGTCGCAA
116 AGCCGAGGATCGACTCGA-TCCCCCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCT-ACGCAA
* * *
15419655 CCCT-TAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAGTGAACTC
179 CCCTCGAGTCCAGTCTGATCTTAGACTGGGAATGAAC-TCGTATGCTTAGACATGGAATGAACTC
* * * *
15419719 CGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGGCCAGAGAGGCAAAATTG
243 CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAA-TG
* * * * * * * *
15419784 C-CTAAGTC-GGGGATCGGCCTGGTCCCCCTTGCGTGCTATCAATCCTGTTGCCGCAACCCTCGG
307 CGC-AAGCCAGGAGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGG
* * * * *
15419847 TCTGATCCGATCTTAGATTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTC
371 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTC
* * * * * * * *
15419912 GGGTGATGAGTCAGTCGGAGAGGCATAATGCACAAGCCGGGGATC-GGCTTAGTCCCCCTCTGTA
436 GGGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCTGA-TCCCCCTCTGCA
* * *
15419976 TGCTACCGATCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
500 TGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * *
15420041 TGCCTAAGCCAACCCACGAAACGGGGGCGTA--GG-TGCTCAGCTGGCTGGAGAGGCAGAATGCG
565 TGCCTAAGCCAACCCACGAAAC--GGGCGTACGGGCGGCTCAACCGGCCGGAGAGGCAGAATGCG
* * * * * * *
15420103 CAAGCCAGGGATCAGCCCGATCGCCCCTACGTGCCGCCGATCCCGCTGCTGGTCCTGCTACCGCA
628 CAAGCTAGGGATCAGCTCGGT--CCCC-A--T-CTG-C-AT---GCTGCCGATCCTGCT-TCGC-
* * * *
15420168 ACCCTCGATACGGTTCGA
680 ACCCTCGGTCCGATCCGA
*
15420186 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGC
15420240 AAAAATCAAA
Statistics
Matches: 1752, Mismatches: 312, Indels: 175
0.78 0.14 0.08
Matches are distributed among these distances:
684 14 0.01
685 43 0.02
686 97 0.06
687 17 0.01
688 3 0.00
689 4 0.00
690 9 0.01
691 5 0.00
692 6 0.00
693 8 0.00
694 4 0.00
695 5 0.00
696 22 0.01
697 182 0.10
698 566 0.32
699 98 0.06
700 123 0.07
702 4 0.00
705 1 0.00
707 2 0.00
709 2 0.00
710 7 0.00
711 375 0.21
712 55 0.03
713 16 0.01
714 1 0.00
716 1 0.00
718 1 0.00
719 1 0.00
720 1 0.00
723 78 0.04
724 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (697 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATCGACT
CGATCCCCCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTACGCAACCCTCGAGTCCAGTCTG
ATCTTAGACTGGGAATGAACTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGAGATCGGC
CCGGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCAGCCGAAG
AGGCATAATGCACAAGCCGGGGATCAGCCTGATCCCCCTCTGCATGCTACCGGTCCCGCTGCCAC
AACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTACGGGCGGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCAGCTCGGTCC
CCATCTGCATGCTGCCGATCCTGCTTCGCACCCTCGGTCCGATCCGA
Found at i:15419111 original size:196 final size:196
Alignment explanation
Indices: 15418763--15419120 Score: 468
Period size: 196 Copynumber: 1.8 Consensus size: 196
15418753 GGTCCGATCC
* * *
15418763 GATCTTAGACTGGGAATGAACTCTGTATGCATAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCATAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** * *
15418828 CCCATGAAACGAGCGTGCAGGTGCTCAACCAACTAGAGAGGTAGAATGCGCAAGCCGGGGATGGC
66 CCCATGAAACGAGCATGCAGGGGCTCAACCAACCAGAGAGGCAGAATGCACAAGCCAAGGAAGAC
* * **
15418893 TCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTGCTAGTCCTGCTACTGTAACCCTCAGTTCGGTC
131 CCCGTCCCCCCCTGCATGCTGTCGATCCTGCTGCTAGTCCTGCTACTGTAACCCTCAGTTCGGTC
15418958 T
196 T
* *
15418959 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-AGAATGAACTTCGTATGCCTAAGCCA
1 GATCTTAGACTGGGAATGAACTCTGTATGCATAGAC-TGAGAATGAACTCCGTATGCCTAAGCCA
* * * *
15419023 ACCCATGGAACGAGCATGCGGGGGCTCAACCGACCGGA-AGGCAGAATGCACAAGCCAAGGACAG
65 ACCCATGAAACGAGCATGCAGGGGCTCAACCAACCAGAGAGGCAGAATGCACAAGCCAAGGA-AG
* *
15419087 ACCCCGTTCCCCCTTGCATGCTGTCGATCCTGCT
129 ACCCCGTCCCCCCCTGCATGCTGTCGATCCTGCT
15419121 ATCGAAACCC
Statistics
Matches: 136, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
195 19 0.14
196 116 0.85
197 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
GATCTTAGACTGGGAATGAACTCTGTATGCATAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
CCCATGAAACGAGCATGCAGGGGCTCAACCAACCAGAGAGGCAGAATGCACAAGCCAAGGAAGAC
CCCGTCCCCCCCTGCATGCTGTCGATCCTGCTGCTAGTCCTGCTACTGTAACCCTCAGTTCGGTC
T
Found at i:15419715 original size:26 final size:26
Alignment explanation
Indices: 15419673--15419725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15419663 CCAGTCCGAT
*
15419673 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15419699 CTTAGACAT-GGAGTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15419725 C
1 C
15419726 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15420000 original size:159 final size:159
Alignment explanation
Indices: 15419698--15420063 Score: 398
Period size: 159 Copynumber: 2.3 Consensus size: 159
15419688 AACTTCGTAT
* * * *
15419698 GCTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGATCAG
* * * * *
15419763 CCGGCCAGAGAGGCAAAATTGCCTAAGTCGGGGATCGGCCTGGTCCCCCTTGCGTGCTATCAATC
66 CCAGCCAGAGAGGCAAAATTGCCTAAGCCGGGGATCGGCCTAGTCCCCCTTGCATGCTACCAATC
* * * *
15419828 CTGTTGCCGCAACCCTCGG-TCTGATCCGA
131 CCGCTGCCACAACCCTCGGTTCGGAT-CGA
* * * * *
15419857 TCTTAGA-TTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGATGA
1 GCTTAGACAT-GGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGATCA
* * * * * * *
15419921 GTCAGTCGGAGAGGCATAA-TGCAC-AAGCCGGGGATCGGCTTAGTCCCCCTCTGTATGCTACCG
65 GCCAGCCAGAGAGGCAAAATTGC-CTAAGCCGGGGATCGGCCTAGTCCCCCT-TGCATGCTACCA
* * *
15419984 ATCCCGCTGCCACAACCCTCGGTTCGGCTGGG
128 ATCCCGCTGCCACAACCCTCGGTTCGGATCGA
* *
15420016 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACG
15420064 GGGGCGTAGG
Statistics
Matches: 169, Mismatches: 33, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
158 27 0.16
159 137 0.81
160 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGATCAG
CCAGCCAGAGAGGCAAAATTGCCTAAGCCGGGGATCGGCCTAGTCCCCCTTGCATGCTACCAATC
CCGCTGCCACAACCCTCGGTTCGGATCGA
Found at i:15420091 original size:159 final size:154
Alignment explanation
Indices: 15419698--15420115 Score: 390
Period size: 159 Copynumber: 2.6 Consensus size: 154
15419688 AACTTCGTAT
* *
15419698 GCTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTA--GGTGCTCAG
* * * * * *
15419763 CCGGCCAGAGAGGCAAAATTGCCTAAGTCGGGGATCGGCCTGGTCCCCCTTGCGTGCTATCAATC
64 CAGG-CGGAGAGGCAAAA-TGCC-AAGCCGGGGATCGGCCTAGTCCCCCTTGCATGCTACCAATC
* * * *
15419828 CTGTTGCCGCAACCCTCGGTCTGATCCGA
126 CCGCTGCCACAACCCTCGGTCGGATCCGA
* * * * * * *
15419857 TCTTAGA-TTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGATGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-T-AGGTGCTCA
* * * * *
15419921 GTCAGTCGGAGAGGCATAATGCACAAGCCGGGGATCGGCTTAGTCCCCCTCTGTATGCTACCGAT
63 G-CAGGCGGAGAGGCAAAATGC-CAAGCCGGGGATCGGCCTAGTCCCCCT-TGCATGCTACCAAT
* * *
15419986 CCCGCTGCCACAACCCTCGGTTCGGCT-GGG
125 CCCGCTGCCACAACCCTCGG-TCGGATCCGA
* *
15420016 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGCGTAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC--GAGCGTAGGTGCTCAG
* * *
15420081 CTGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATC
64 CAGGC-GGAGAGGCAAAATGC-CAAGCCGGGGATC
15420116 AGCCCGATCG
Statistics
Matches: 207, Mismatches: 41, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
158 30 0.14
159 164 0.79
160 9 0.04
161 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAGGTGCTCAGCA
GGCGGAGAGGCAAAATGCCAAGCCGGGGATCGGCCTAGTCCCCCTTGCATGCTACCAATCCCGCT
GCCACAACCCTCGGTCGGATCCGA
Found at i:15420225 original size:26 final size:26
Alignment explanation
Indices: 15420187--15420239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15420177 ACGGTTCGAT
*
15420187 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15420213 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15420239 C
1 C
15420240 AAAAATCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15420649 original size:171 final size:170
Alignment explanation
Indices: 15420344--15420676 Score: 409
Period size: 171 Copynumber: 2.0 Consensus size: 170
15420334 GCAGGTCCCA
** *
15420344 CTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * *
15420409 CACGAAACGGGTGTGCGGGCACTCAGTCGGCCAGAGAGGGATAATGCGTAAGCCAGGGATCAGCC
66 CACAAAACGAGCGTGCGGGCACTCAATCGGCCAGAGAGGCAAAATGCATAACCCAGGGATCAGCC
*
15420474 CGATCCCTCTCTGCATGCTGCTGATCCCGCTGCCGATCCTG
131 CGATCCCTC-CTGCATGCTACTGATCCCGCTGCCGATCCTG
* * * *
15420515 CTGCCAGAACCCTTGGTCCAGCTGGGGCTTAGACATAGAATGAACTCCGTATGGCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
* * ** **
15420580 CATAAAACGAGCGTGTGGGTGCTCAATCGATC-GAAGAGGCAAAATGCATAACCCAGGGATC-GA
66 CACAAAACGAGCGTGCGGGCACTCAATCGGCCAG-AGAGGCAAAATGCATAACCCAGGGATCAG-
* *
15420643 CCCGATCCCTCCTGCATGCTATTGATCCTGCTGC
129 CCCGATCCCTCCTGCATGCTACTGATCCCGCTGC
15420677 TGGTCCTGTT
Statistics
Matches: 136, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
170 22 0.16
171 114 0.84
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (170 bp):
CTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
CACAAAACGAGCGTGCGGGCACTCAATCGGCCAGAGAGGCAAAATGCATAACCCAGGGATCAGCC
CGATCCCTCCTGCATGCTACTGATCCCGCTGCCGATCCTG
Found at i:15421463 original size:26 final size:26
Alignment explanation
Indices: 15421434--15421486 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15421424 TCAGTCCGAT
15421434 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15421460 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15421486 C
1 C
15421487 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15421674 original size:158 final size:156
Alignment explanation
Indices: 15421460--15421961 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 156
15421450 ACTCCGTATG
*
15421460 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
*
15421525 CGGTCGGAGAGGTAGAATGCGCAAGCGGGAGAATCAGCCCGACCCCCCTGCGTGCTGTC-GATCT
66 CGGTCGGAGAGGTAGAATGCGCAAGCGGGAG-ATC-GCCCGACCCCCCTGCGTGCTG-CAGATCC
* **
15421589 TACTGTTGCAACCCTCGGTCTGGTCTGAT
128 TGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * *
15421618 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATTAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
15421682 CTGG-CGAGAGAGGCATAATGCGCAAGC-CGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCAGA
65 CCGGTCG-GAGAGGTAGAATGCGCAAGCGGGA-GATCG-CCC-GACCCCC-CTGCGTGCTGCAGA
* * * * **
15421745 TCCCGCTGCCACAACCTTCAGTCTGG-CTAGGG
125 TCCTGCTGCCGCAACCCTCGGTCTGGTCT-GAT
* * * * * * *
15421777 CTTACACATGGAATGAACTCCCTGTGCCTAAGCCAACCAACGAAATGGGCATGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
15421842 CGGTCGGAGAGGTAGAATGCACAAGCCGGG-GATTGGCCCAATCCCCCCTGCGTGCTACTGATCC
66 CGGTCGGAGAGGTAGAATGCGCAAG-CGGGAGA-TCGCCCGA-CCCCCCTGCGTGCTGCAGATCC
* * * **
15421906 TGCTGCCGTAACCCTCGATCTGATCCAAT
128 TGCTGCCGCAACCCTCGGTCTGGTCTGAT
15421935 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
15421962 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 56, Indels: 32
0.76 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 12 0.04
158 140 0.51
159 112 0.41
160 6 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGTAGAATGCGCAAGCGGGAGATCGCCCGACCCCCCTGCGTGCTGCAGATCCTGC
TGCCGCAACCCTCGGTCTGGTCTGAT
Found at i:15422597 original size:11 final size:11
Alignment explanation
Indices: 15422566--15422598 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
15422556 CGGTTAGGCT
15422566 CTCCGACGATG
1 CTCCGACGATG
15422577 CTCC-AGCGATG
1 CTCCGA-CGATG
15422588 CTCCGACGATG
1 CTCCGACGATG
15422599 GTGCCACGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:15422706 original size:26 final size:26
Alignment explanation
Indices: 15422668--15422720 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15422658 GGCTTAAAAT
* *
15422668 CTTAGACTGGGAATGATCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15422694 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15422720 C
1 C
15422721 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15423539 original size:26 final size:26
Alignment explanation
Indices: 15423510--15423562 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15423500 CCGGTCCAAT
15423510 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15423536 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15423562 C
1 C
15423563 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15424187 original size:158 final size:158
Alignment explanation
Indices: 15423865--15424365 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 158
15423855 AACTCCATAT
* * *
15423865 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * *** *
15423930 CCAGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCT
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCACTACATGCTCCAGATCC
* * *
15423995 TGCTACCACAACCCTCGGTCCGGTCCGA
131 CGCTACCACAACCCTCAGTCCGGTCAGA
* * *
15424023 TCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCA
* * *
15424087 GCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATTGGCCCGATCCCTCACTACATGCTACCAG-
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCC-CACTACATGCT-CCAGA
* *
15424151 TCCCGCTGCCACAACCCTCAGTCTGG-CTAG-
128 TCCCGCTACCACAACCCTCAGTCCGGTC-AGA
* * * ** * * *
15424181 GGTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * * * * * *
15424246 TCTGCCGAAAAAGTAGAATGCGCAAGCCGGGGATAGGCTCGGTCCCC-CTGCGTGCTGTC-GATC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCACTACATGCT-CCAGATC
* * *
15424309 CTGCTACCACAACCCTCAGTCCAGTCCG-
130 CCGCTACCACAACCCTCAGTCCGGTCAGA
*
15424337 GTGTTAGAC-TGGGAATGAACTCCGTATGC
1 G-CTTAGACAT-GGAATGAACTCCGTATGC
15424366 TTAGACTGAG
Statistics
Matches: 277, Mismatches: 57, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
155 1 0.00
156 33 0.12
157 27 0.10
158 184 0.66
159 31 0.11
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCACTACATGCTCCAGATCC
CGCTACCACAACCCTCAGTCCGGTCAGA
Found at i:15424369 original size:26 final size:26
Alignment explanation
Indices: 15424340--15424391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15424330 CAGTCCGGTG
15424340 TTAGACTG-GGAATGAACTCCGTATGC
1 TTAGACTGAGG-ATGAACTCCGTATGC
*
15424366 TTAGACTGAGGATGAACTCTGTATGC
1 TTAGACTGAGGATGAACTCCGTATGC
15424392 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGGATGAACTCCGTATGC
Found at i:15425626 original size:159 final size:157
Alignment explanation
Indices: 15425233--15425713 Score: 405
Period size: 158 Copynumber: 3.0 Consensus size: 157
15425223 CTATTACCAA
*
15425233 AACCCTCGGT-CAGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
1 AACCCTC-GTCCA-GCTGAGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* * * * *
15425297 ACGAGCGTACGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGGACC
64 ACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGACC
* * * * * * **
15425362 CTCCTGTGTCCTGTCGATCCTGTTGTCGT
129 CCCCTGCGTCCTATCGATCCCGCTGCCAC
* * * * *
15425391 AACCCTCGCTCCGGTTCGA-TCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 AACCCTCG-TCCAGCT-GAGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * ** *
15425454 AATGAGCGTGCGGGCGCTGAGTCGATTGAAGAGGC-GTAATGCGCAAGCCGAGGATCGACCCGGT
63 AACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGGCAG-AATGCGCAAGCCGAGGATCGACCCGGA
*
15425518 CCCCCTCTGCGTGCTATCGATCCCGCTGCCAC
127 CCCCC-CTGCGTCCTATCGATCCCGCTGCCAC
* * *
15425550 AACCCTCAGTCCAGCTGAGGCTTTGACATGGAATGAACTCCCTAT-CCTTAAGCCAACCCATGAA
1 AACCCTC-GTCCAGCTGAGGCTTAGACATGGAATGAACTCCATATGCC-TAAGCCAACCCACGAA
* * * * * ** * * * * * * * *
15425614 ACGGGCATGCGGGTGCTTAGCCGGTCGGAGAGGTAGAATGCACAAGCTGGGGATTGGCCCGGTCC
64 ACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGACC
* * * * * *
15425679 CCCCTACGTGCTGTCGATCCTGCTGTCGC
129 CCCCTGCGTCCTATCGATCCCGCTGCCAC
15425708 AACCCT
1 AACCCT
15425714 TGGTCCGATT
Statistics
Matches: 260, Mismatches: 52, Indels: 22
0.78 0.16 0.07
Matches are distributed among these distances:
157 4 0.02
158 135 0.52
159 117 0.45
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
AACCCTCGTCCAGCTGAGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGACCCC
CCTGCGTCCTATCGATCCCGCTGCCAC
Found at i:15425769 original size:26 final size:26
Alignment explanation
Indices: 15425728--15425780 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15425718 CCGATTCGAA
*
15425728 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15425754 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15425780 C
1 C
15425781 CTAACTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15432403 original size:26 final size:26
Alignment explanation
Indices: 15432365--15432417 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15432355 GGCTTAAAAT
15432365 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15432391 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
15432417 C
1 C
15432418 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15433423 original size:26 final size:26
Alignment explanation
Indices: 15433385--15433437 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15433375 GGCTCAAAAT
*
15433385 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15433411 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15433437 C
1 C
15433438 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15433778 original size:26 final size:26
Alignment explanation
Indices: 15433728--15433780 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15433718 CTGGTCCAAT
*
15433728 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAATCTCGTATG
*
15433754 CTTAGACTGGGGATGAA-CTCTGTATG
1 CTTAGACTGGGAATGAATCTC-GTATG
15433780 C
1 C
15433781 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATCTCGTATG
Found at i:15434661 original size:26 final size:26
Alignment explanation
Indices: 15434610--15434662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15434600 CCGATTTGAT
* *
15434610 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15434636 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15434662 C
1 C
15434663 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15435379 original size:26 final size:26
Alignment explanation
Indices: 15435341--15435393 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15435331 GGCTCAAAAT
*
15435341 CTTAGGCTGGGAATGAAATCTGTATG
1 CTTAGGCTGGGAATGAAATCCGTATG
*
15435367 CTTAGGCAT-GGAATGAACTCCGTATG
1 CTTAGGC-TGGGAATGAAATCCGTATG
15435393 C
1 C
15435394 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAAATCCGTATG
Found at i:15436102 original size:26 final size:26
Alignment explanation
Indices: 15436064--15436116 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15436054 CCAGTTTGAT
15436064 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15436090 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15436116 C
1 C
15436117 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15437306 original size:26 final size:26
Alignment explanation
Indices: 15437268--15437320 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15437258 GGCTTAAAAT
*
15437268 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15437294 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15437320 C
1 C
15437321 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15437675 original size:159 final size:152
Alignment explanation
Indices: 15437293--15437678 Score: 366
Period size: 153 Copynumber: 2.5 Consensus size: 152
15437283 AACTCCGTAT
* * * *
15437293 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAG
* * * **
15437358 CCGGTCGGAGAGGTAGAATGCACAAACCGAGGATCAACCCGATCCCCCTTACGTGTTATTTATCC
66 CCGGTCGAAGAGGCAGAATGCACAAACCGAGGATCAACCCGATCCCCCTTA-GTGTGATCCATCC
* *
15437423 TGCTGCCACAACCCTCGGTCCAA
130 CGCTGCCACAACCCTCGCTCCAA
* * * * * *
15437446 TCTTAGAC-TAGGAATGAACTCCGTATACATAAGTCAACCCACGAAACGAGCGTGCAGGCAC-CG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTC-
* * * * * * * *
15437509 AGTCGGTCGAAGAGGCATAATGCGCAAGCC-AGGGATCAGCCCGGTCCTCCTCT-GTGTGCTGCC
64 AGCCGGTCGAAGAGGCAGAATGCACAAACCGA-GGATCAACCCGATCCCCCT-TAGTGTGAT-CC
* *
15437572 AGTCCCGCTGCCACAATCCTCAGCTCGACTAGG
126 A-TCCCGCTGCCACAACCCTC-GCTC--C-A-A
* * *
15437605 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAG
15437670 CCGGTCGAA
66 CCGGTCGAA
15437679 AAGGTAGACT
Statistics
Matches: 183, Mismatches: 37, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
152 8 0.04
153 90 0.49
154 18 0.10
155 3 0.02
157 1 0.01
158 1 0.01
159 60 0.33
160 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (152 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCACAAACCGAGGATCAACCCGATCCCCCTTAGTGTGATCCATCCC
GCTGCCACAACCCTCGCTCCAA
Found at i:15437803 original size:26 final size:26
Alignment explanation
Indices: 15437764--15437817 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15437754 GCTCTAATCT
15437764 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* *
15437790 TAGACTGGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
15437816 TA
1 TA
15437818 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:15439397 original size:26 final size:26
Alignment explanation
Indices: 15439361--15439413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15439351 TCGATCTGAT
*
15439361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
15439387 CTTACACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15439413 C
1 C
15439414 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15439762 original size:53 final size:53
Alignment explanation
Indices: 15439675--15439786 Score: 161
Period size: 53 Copynumber: 2.1 Consensus size: 53
15439665 GGATCGACCT
** * *
15439675 GATCCCCCCTACGTGCTATTGATCCTACTGCTGGTCCTACTACCGTAACCCTC
1 GATCCCCCCTACGTGCTACCGATCCTACTACTGGTCCTACTACCGCAACCCTC
* * *
15439728 GATCCCTCCTACGTGCTACCGATCCTGCTACTGGTCCTGCTACCGCAACCCTC
1 GATCCCCCCTACGTGCTACCGATCCTACTACTGGTCCTACTACCGCAACCCTC
15439781 GATCCC
1 GATCCC
15439787 GATCCAAACT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.16, C:0.42, G:0.16, T:0.26
Consensus pattern (53 bp):
GATCCCCCCTACGTGCTACCGATCCTACTACTGGTCCTACTACCGCAACCCTC
Found at i:15439824 original size:26 final size:27
Alignment explanation
Indices: 15439795--15439852 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
15439785 CCGATCCAAA
15439795 CTTAGAC-TGAGAATGAACTCCATATG-
1 CTTAGACATG-GAATGAACTCCATATGC
*
15439821 CTTAGACATGGAATGAACTCCGTATGC
1 CTTAGACATGGAATGAACTCCATATGC
15439848 CTTAG
1 CTTAG
15439853 CCAACCCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (27 bp):
CTTAGACATGGAATGAACTCCATATGC
Found at i:15440167 original size:26 final size:26
Alignment explanation
Indices: 15440138--15440190 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15440128 CCGATCCGAT
15440138 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
15440164 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15440190 C
1 C
15440191 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15441110 original size:13 final size:13
Alignment explanation
Indices: 15441070--15441110 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
15441060 CGAGTGCTCA
15441070 GCCGATCGGAGAG
1 GCCGATCGGAGAG
*
15441083 GACGATCGGAGAG
1 GCCGATCGGAGAG
15441096 GCCGATCGGAGAG
1 GCCGATCGGAGAG
15441109 GC
1 GC
15441111 ATAATGCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.24, C:0.22, G:0.46, T:0.07
Consensus pattern (13 bp):
GCCGATCGGAGAG
Done.