Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 97 of 138
Found at i:15441707 original size:158 final size:157
Alignment explanation
Indices: 15441239--15441729 Score: 441
Period size: 158 Copynumber: 3.1 Consensus size: 157
15441229 CTTAGTAATT
* * * * *
15441239 GAATGAACTACGTATGCCTAAGCCAACTCACGAAACGAACATGCGGGCGCTCAGTCGGTCGAAGA
1 GAATCAACTCCGTATGCCTAAGCCAAC-CACGAAACGAGCATGCGGGCACTCAGCCGGTCGAAGA
* * * * * * * *
15441304 GGCAGAATGCGCAAATCGTGGATCAGCCCGGTCCCCGCTACATGCTACCGATCCTGCTACCGCAA
65 GGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTACGTGCTATCGATCCTACTACAGCAA
* *
15441369 CCCTCAGTCCGATCCGATCCTAGACTAG
130 CCCTCAGTCTGATCCGATCTTAGACTAG
* * * * * * * *
15441397 GAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCCTGCGGGCACTGAACCGGTCGAAGA
1 GAATCAACTCCGTATGCCTAAGCCAA-CCACGAAACGAGCATGCGGGCACTCAGCCGGTCGAAGA
* * ** * * * * *
15441462 GGCATAATGCACAAGTCGAGGATCAATCCGATCCCCTCTGCGTGTTGTCGGTCCTACTACCA-CA
65 GGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTACGTGCTATCGATCCTACTA-CAGCA
* * **
15441526 ACCCTCAGTCTG-GCTGGGGCTTAGAC-ATG
129 ACCCTCAGTCTGATC-CGATCTTAGACTA-G
* * * *** *
15441555 GAATCAAGTACC-TATGCCTAAGCCAACCGACGAAACGGGCATGCAGGCACTCAGCCAACCGGAG
1 GAATCAACT-CCGTATGCCTAAGCCAACC-ACGAAACGAGCATGCGGGCACTCAGCCGGTCGAAG
* * **
15441619 AGACAGAATGTGCAAGTCGAGGATTGGCCCGATCCCCCCTACGTGCTATCGATCCTACTACAGCA
64 AGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTACGTGCTATCGATCCTACTACAGCA
*
15441684 ACCCTCAGTCTGATCCGATCTTAGACTGG
129 ACCCTCAGTCTGATCCGATCTTAGACTAG
* *
15441713 GAATGAAGTCCGTATGC
1 GAATCAACTCCGTATGC
15441730 TTAGATTGGG
Statistics
Matches: 256, Mismatches: 67, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
157 8 0.03
158 243 0.95
159 5 0.02
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (157 bp):
GAATCAACTCCGTATGCCTAAGCCAACCACGAAACGAGCATGCGGGCACTCAGCCGGTCGAAGAG
GCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTACGTGCTATCGATCCTACTACAGCAAC
CCTCAGTCTGATCCGATCTTAGACTAG
Found at i:15441732 original size:26 final size:26
Alignment explanation
Indices: 15441703--15441781 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
15441693 CTGATCCGAT
* *
15441703 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
* *
15441729 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
15441755 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
15441781 C
1 C
15441782 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:15442505 original size:25 final size:26
Alignment explanation
Indices: 15442457--15442508 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15442447 TCGGTTTGAT
* *
15442457 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15442483 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15442508 C
1 C
15442509 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15443690 original size:26 final size:26
Alignment explanation
Indices: 15443654--15443706 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15443644 CCGGTCTAAT
15443654 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
15443680 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15443706 C
1 C
15443707 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15444183 original size:188 final size:184
Alignment explanation
Indices: 15443858--15444223 Score: 466
Period size: 188 Copynumber: 2.0 Consensus size: 184
15443848 GGGCTTAGAC
* * *
15443858 ATGGAATAAACTCCGTATGCCTAAGCCAACGCACGAAACGACCGTACGGGCGCTCAGCCGGCCAG
1 ATGGAATAAACTCCGTATGCCTAACCCAACCCACGAAACGACCGTACGGGCGCTCAGCCAGCCAG
* * * * *
15443923 AGAGGCAGAATACGTAAGCCAGGGATCAGCTCGATCCCTCCTGCATACTGTCGACCCTGTTCCCG
66 AGAGGCAGAATACGCAAACCAGGGATCAGCTCGATCCCCCCTACATACTGTCGACCCTGCTCCCG
* * * *
15443988 TAACCCTCGGTCTGGTCTGATCTTAGACTAGG-AATGAACTCCGTATGCTTCGAT
131 CAACCCTCGATCCGATCTGATCTTAGACT-GGTAATGAACTCCGTATGCTTCGAT
* * *
15444042 ATGGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCAAGCGTCCGGGCGCTCAGCCAG
1 ATGGAATAAACTCCGTATGCCTAACCCAACCCACGAAACGA-C---CGTACGGGCGCTCAGCCAG
* * * * *
15444107 TCAGAGAGGCAGAATGCGCAAACCAGGGA-CTGGCTCGATCCCCCCTACGTACTGTCGATCCTGC
62 CCAGAGAGGCAGAATACGCAAACCAGGGATC-AGCTCGATCCCCCCTACATACTGTCGACCCTGC
**
15444171 TGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGTAATGAACTCCGTATGC
126 TCCCGCAACCCTCGATCCGATCTGATCTTAGACTGGTAATGAACTCCGTATGC
15444224 CAAAGTCAAC
Statistics
Matches: 154, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
184 37 0.24
185 1 0.01
187 3 0.02
188 113 0.73
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (184 bp):
ATGGAATAAACTCCGTATGCCTAACCCAACCCACGAAACGACCGTACGGGCGCTCAGCCAGCCAG
AGAGGCAGAATACGCAAACCAGGGATCAGCTCGATCCCCCCTACATACTGTCGACCCTGCTCCCG
CAACCCTCGATCCGATCTGATCTTAGACTGGTAATGAACTCCGTATGCTTCGAT
Found at i:15444409 original size:159 final size:158
Alignment explanation
Indices: 15444197--15444502 Score: 346
Period size: 159 Copynumber: 1.9 Consensus size: 158
15444187 CCGATCTGAT
* * * * * * * * *
15444197 CTTAGACTGGTAATGAACTCCGTATGCCAAAGTCAACCCACGAAATGATCGTGCGGGCATTGAGT
1 CTTAGACTGGTAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTGCAGACACTCAGC
* ** * ** *
15444262 GGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCAG-TCCCTCTTTGCGTGCTGTCGGTC
66 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGAC-CAGATCCC-CCCTGCATGCTGTCGGTC
15444326 CCACTACCACAACCCTCAGCCTGACTGGGG
129 CCACTACCACAACCCTCAGCCTGACTGGGG
* * * *
15444356 CTTAGACATGG-ATTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGACGCTCAG
1 CTTAGAC-TGGTAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTGCAGACACTCAG
* *
15444420 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGGTCC
65 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCAGATCCCCCCTGCATGCTGTCGGTCC
** *
15444485 TGCTACCGCAACCCTCAG
130 CACTACCACAACCCTCAG
15444503 TCTGGTCTGA
Statistics
Matches: 120, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
158 33 0.28
159 84 0.70
160 3 0.03
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGTAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCGTGCAGACACTCAGC
CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCAGATCCCCCCTGCATGCTGTCGGTCCC
ACTACCACAACCCTCAGCCTGACTGGGG
Found at i:15444550 original size:26 final size:26
Alignment explanation
Indices: 15444514--15444566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15444504 CTGGTCTGAT
*
15444514 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15444540 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15444566 C
1 C
15444567 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15446282 original size:341 final size:350
Alignment explanation
Indices: 15445556--15446313 Score: 801
Period size: 341 Copynumber: 2.2 Consensus size: 350
15445546 TCCGGTTGGG
* * * **
15445556 GCTTAGACGTGGAATGAACTCAC-TATGCCTAAGCCAACCCATGAAAC-AG-GTGCGTGGGCACT
1 GCTTAGACATGGAATGAACTC-CGTAAGCCTAAGTCAACCCACAAAACGAGCGTGC--GGGCACT
* ** * * * * *
15445618 CAGCCGGCCTGAGAGACAGAATGCGCAGGTCGGGGATCAGCCCGTCCCCCTATGCATGCTATCGG
63 CAGTCGATCGGACAGGCAGAATGCGCAGGTCGGGGACCAGCCCGTCCCCCTATGCATGCTACCGG
* * * * * *
15445683 TCCCATTGCCATAACCCTCGGTCTGCTGGGGCTTAGACATGGAATGAAATCACTATGCCTAAGCC
128 TCCCATTGCCACAACCCTCAGTCGGCTAGGGCTTAGACATGAAATGAAACCACTATGCCTAAGCC
*
15445748 AACCCACGAAACGGGCGTGCGGGTGCTCAGCCAGTCGAAAAGGCAAAATGCGTAAGCCAGGGATC
193 AACCCACGAAACGGGCGTGCGGGTGCTCAGCCAGTCGAAAAGGCAAAATGCGCAAGCCAGGGATC
* * *
15445813 GACCCGATCCCTCCTATGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCATCGGTCTGG
258 GACCCGATCCCTCCTA-GTGCTGTCGA--CAGCTGCTGATCCTGCTGTCGCAACCATCGGTCCGG
*
15445878 TCTGATCTTAGATTGGGAATGAACTCCGTAC
320 TCTGATCTTAGACTGGGAATGAACTCCGTAC
* * * * *
15445909 GTTTAGACATGGAATGAACTCGGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * **
15445974 TCGATCGGACAGGCAGAATGTGCAGGTCGGGGACCGGTCCGGTCCCCCTCTGTGTGCTACCGGTC
66 TCGATCGGACAGGCAGAATGCGCAGGTCGGGGACCAG-CCCGTCCCCCTATGCATGCTACCGGTC
* *
15446039 CCATTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGAAATGAACCCCCTATGCCTAAGCCA
130 CCATTGCCACAACCCTCAGT-CGGCTAGGGCTTAGACATGAAATGAAACCACTATGCCTAAGCCA
* * * * * *
15446104 ACCCATGAAATGGGCGTGCGGGTGCTCAGCC-GATCGGAGAGGC-AAATGCGCAAGTCGGGGATC
194 ACCCACGAAACGGGCGTGCGGGTGCTCAGCCAG-TCGAAAAGGCAAAATGCGCAAGCCAGGGATC
*** * * * *
15446167 GGTTCGGT-CC-CC-A-TGC-GT-G-CAG-T-C-GATTCTGTTGTCGCAACCCTCGGTCCGGTCT
258 GACCCGATCCCTCCTAGTGCTGTCGACAGCTGCTGATCCTGCTGTCGCAACCATCGGTCCGGTCT
* *
15446222 GATTTTAGACTGGGAATGAACTCCGTAT
323 GATCTTAGACTGGGAATGAACTCCGTAC
* * * * *
15446250 GCTTAGA-GTAGGGATGAACTCCGTAAGCCTAAGTCAACCTACGAAATGAGCGTGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCA
15446314 ATCGGCCAGA
Statistics
Matches: 340, Mismatches: 58, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
340 1 0.00
341 103 0.30
342 1 0.00
343 1 0.00
344 2 0.01
347 1 0.00
348 2 0.01
349 3 0.01
351 1 0.00
352 2 0.01
353 80 0.24
354 64 0.19
355 79 0.23
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (350 bp):
GCTTAGACATGGAATGAACTCCGTAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAG
TCGATCGGACAGGCAGAATGCGCAGGTCGGGGACCAGCCCGTCCCCCTATGCATGCTACCGGTCC
CATTGCCACAACCCTCAGTCGGCTAGGGCTTAGACATGAAATGAAACCACTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCGGGTGCTCAGCCAGTCGAAAAGGCAAAATGCGCAAGCCAGGGATCGAC
CCGATCCCTCCTAGTGCTGTCGACAGCTGCTGATCCTGCTGTCGCAACCATCGGTCCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTAC
Found at i:15446723 original size:159 final size:159
Alignment explanation
Indices: 15446411--15446723 Score: 355
Period size: 159 Copynumber: 2.0 Consensus size: 159
15446401 GGTCCTGCTG
*
15446411 CCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCAT
* * * * * *
15446476 GAAACGAGCGTGTGGGCACTCAATCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGC
66 GAAACGAGCGTGCGGGCACTCAATCGACCGAAGAGGTAGAATACACAAGCCGAGGATCAACCCGC
* ***
15446541 TCCCCCTCTGCGTACTGTTGATCCCGCTA
131 TCCCCCTCTGCATACTACCGATCCCGCTA
** *
15446570 CCACAACCCTC-AGTCTGGCTGGGG-TGTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 CCACAACCCTCGA-TCCAGCTGGGGCT-TAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCC
* * * * **
15446633 ATGAAATGGGCGTGCGGGCGCTC-AGCTGACCGAAGAGGTAGAATACGTAAGCCGAGGATCAACC
64 ATGAAACGAGCGTGCGGGCACTCAATC-GACCGAAGAGGTAGAATACACAAGCCGAGGATCAACC
* * *
15446697 CGGTCCTTCC-CTGCATGCTACCGATCC
128 CGCTCC-CCCTCTGCATACTACCGATCC
15446724 TGCTGCTGGT
Statistics
Matches: 127, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
158 4 0.03
159 121 0.95
160 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
CCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCACTCAATCGACCGAAGAGGTAGAATACACAAGCCGAGGATCAACCCGC
TCCCCCTCTGCATACTACCGATCCCGCTA
Found at i:15447211 original size:866 final size:869
Alignment explanation
Indices: 15445516--15447401 Score: 1956
Period size: 866 Copynumber: 2.2 Consensus size: 869
15445506 CCCCTCTGCG
* * * * *
15445516 TGCTGTCGGTCCCGCTGTCACAACCTTCGGTCCGGTTGGGGCTTAGACGTGGAATGAACTCAC-T
1 TGCTGCCGGTCCTGCTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTC-CGT
* * * *
15445580 ATGCCTAAGCCAACCCATGAAAC-AGGTGCGTGGGCACTCAGCCGGCCTGAGAGACAGAATGCGC
65 ATGCCTAAGCCAACCCATGAAACGAGGT--GTGGGCACTCAACCGGTCGGAGAGGCAGAATGCGC
* * * * * * * *
15445644 AGGTCGGGGATC-AGCCCGTCCCCCTATGCATGCTATCGGTCCCATTGCCATAACCCTCGGTCTG
128 AAGCCGGGGATCGA-CCCGTCCCCCTATGCATACTATCGATCCCACTACCACAACCCTCAGTCTG
*
15445708 CTGGGGCTTAGACATGGAATGAAATCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTG
192 CTGGGGCTTAGACATGGAATGAAATCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCG
* * * **
15445773 CTCAGCCAGTCGAAAAGGCAAAATGCGTAAGCCAGGGATCGACCCGATCCCTCCTATGTGCTGTC
257 CTCAGCCAGCCGAAAAGGCAAAATACGTAAGCCAGGGATCAACCCGATCCCTCCTATGTGCTACC
* * * * * * *
15445838 GATCCTGCTGCTGGTCCTGCTGTCGCAACCATCGGTCTGGTCTGATCTTAGATTGGGAATGAACT
322 GATCCTGCTGCTGGTCCTACTGCCACAACCATCGATCCGGTCTGATATTAGACTGGGAATGAACT
* * * * * * * *
15445903 CCGTACGTTTAGACATGGAATGAACTCGGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGC
387 CCATACGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGAC
* * * * * **
15445968 GCTCAGTCGATCGGACAGGCAGAATGTGCAGGTCGGGGACCGGTCCGGTCCCCCTCTGTGTGCTA
452 GCTCAGCCGATCGAACAGGCAGAATGTGCAAGTCGGGGACCGCTCCGATCCCCCTCTGCATGCTA
* * * * *
15446033 CCGGTCCCATTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGAAATGAACCCCCTATGCCT
517 CCGATCACACTGCCACAACCCCCAGTCCGGCTAGAGCTTAGACATGAAATGAACCCCCTATGCCT
* * * * *
15446098 AAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAAATGCGCAAGTCGGG
582 AAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAGCCGATCGGAAAGACAAAT--GCAAGTC---
* * ** *
15446163 GATCGGTTCGGTCCCCATGCGTGCAGTCGATTCTGTTGTCGCAACCCTCGGTCCGGTCTGATTTT
642 G-CCGGTTC-G-CCCCATGCGTGCAGTCGAATCTGTTGTCGCAACCCTCGGTCCAATCTGATCTT
* * * *
15446228 AGACTGGGAATGAACTCCGTATGCTTAGAGTAGGGATGAACTCCGTAAGCCTAAGTCAACCTACG
704 AGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTAAGCCTAAGTAAACCCACG
* * **
15446293 AAATGAGCGTGCGGGCACTCAATCGGCCAGAGAGGCCGATCGGAGAGGCATAATGCGCAAGCTGG
769 AAACGAGCGTGCGGGCACTCAATCGGCCAGAGAGGCCGACCGGAGAGGCATAATGCGCAAGCCAG
* * * * * *
15446358 GGATCAGCCCGATCTCTCTCTGTGTGCTGCCAATTGC
834 AGATCAACCCGATCCCTCTCTGCGTGCTACCAA-TAC
* * *
15446395 -GCTGCCGGTCCTGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTA
1 TGCTGCCGGTCCTGCTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * *
15446459 AGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAATCGATCGGAGAGGTAGAATGCACAA
66 TGCCTAAGCCAACCCATGAAACGAG-GTGTGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAA
* * * * *
15446524 GCCGGGGATCGACCCGCTCCCCCTCTGCGTACTGTTGATCCCGCTACCACAACCCTCAGTCTGGC
130 GCCGGGGATCGACCCG-TCCCCCTATGCATACTATCGATCCCACTACCACAACCCTCAGTCT-GC
* * * *
15446589 TGGGG-TGTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCG
193 TGGGGCT-TAGACATGGAATGAAATCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCG
* * * * * * *
15446653 CTCAG-CTGACCGAAGAGGTAGAATACGTAAGCC-GAGGATCAACCCGGTCCTTCC-CTGCATGC
257 CTCAGCCAG-CCGAAAAGGCAAAATACGTAAGCCAG-GGATCAACCCGATCCCTCCTATG--TGC
* *
15446715 TACCGATCCTGCTGCTGGTCCTACTGCCACAACCTTCGATCCGGTTTGATATTAGACTGGGAATG
318 TACCGATCCTGCTGCTGGTCCTACTGCCACAACCATCGATCCGGTCTGATATTAGACTGGGAATG
* * *
15446780 AACTTCATATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC
383 AACTCCATACGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTAC
* * * *
15446845 GGACGCTCTGCCGGTCGAAGAGGCAGAATGTGCAAGTCGGGGACCGC-CTCGATCCCGC-CTGCA
448 GGACGCTCAGCCGATCGAACAGGCAGAATGTGCAAGTCGGGGACCGCTC-CGATCCCCCTCTGCA
* * * * **
15446908 TGCT-CTCGATCATACTG-CAGCAACCCCC-GATCCGGTCT-GATCTTAGA-TTGGAATGAACTT
512 TGCTAC-CGATCACACTGCCA-CAACCCCCAG-TCCGG-CTAGAGCTTAGACATGAAATGAACCC
** * * * *
15446968 TGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCGCTGAGTCGGA-CGGAAAGACATAAT-
573 CCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAG-CCGATCGGAAAGACA-AATG
* * * *
15447031 C-AG-C-CCGG-TC-CCCCCTGCGTGCTGTC-AATCT-TACTGTCGTAACCCTCTGTCCAATCTG
636 CAAGTCGCCGGTTCGCCCCATGCGTGCAGTCGAATCTGT--TGTCGCAACCCTCGGTCCAATCTG
* * *
15447089 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAAC
699 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTAAGCCTAAGTAAAC
* * * * * * *
15447154 CCATGAAACGAG-GTTGCGGGCACTTAGTCGGTCGGAGAGGTCGGCCGGAGAGGCATAATGCGCA
764 CCACGAAACGAGCG-TGCGGGCACTCAATCGGCCAGAGAGGCCGACCGGAGAGGCATAATGCGCA
* *
15447218 AGCCAGAGATCAACCCGATCCCTCTCTGCGTGCTATCGATAC
828 AGCCAGAGATCAACCCGATCCCTCTCTGCGTGCTACCAATAC
* * * * ** * *
15447260 TACTACTGGTCCTGCAT-CCATAACCTTCGGTTTGGCTAGGGCTTAGACATGAAATGAACTCCGT
1 TGCTGCCGGTCCTGC-TGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGT
*
15447324 ATGCCTAAGCCAACCCATGAAACGAGTGTGTTGTG--CTCAACCGGTCGGAGAGGCAGAATGCGC
65 ATGCCTAAGCCAACCCATGAAACGAG-GTG-TGGGCACTCAACCGGTCGGAGAGGCAGAATGCGC
* *
15447387 AAGCCAGAGATCGAC
128 AAGCCGGGGATCGAC
15447402 TCAATCCCCT
Statistics
Matches: 828, Mismatches: 155, Indels: 62
0.79 0.15 0.06
Matches are distributed among these distances:
864 1 0.00
865 44 0.05
866 252 0.30
867 4 0.00
869 2 0.00
870 3 0.00
875 1 0.00
876 2 0.00
877 2 0.00
878 116 0.14
879 100 0.12
880 141 0.17
881 160 0.19
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (869 bp):
TGCTGCCGGTCCTGCTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCATGAAACGAGGTGTGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAG
CCGGGGATCGACCCGTCCCCCTATGCATACTATCGATCCCACTACCACAACCCTCAGTCTGCTGG
GGCTTAGACATGGAATGAAATCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
GCCAGCCGAAAAGGCAAAATACGTAAGCCAGGGATCAACCCGATCCCTCCTATGTGCTACCGATC
CTGCTGCTGGTCCTACTGCCACAACCATCGATCCGGTCTGATATTAGACTGGGAATGAACTCCAT
ACGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTC
AGCCGATCGAACAGGCAGAATGTGCAAGTCGGGGACCGCTCCGATCCCCCTCTGCATGCTACCGA
TCACACTGCCACAACCCCCAGTCCGGCTAGAGCTTAGACATGAAATGAACCCCCTATGCCTAAGC
CAACCCATGAAATGAGCGTGCGAGCGCTCAGCCGATCGGAAAGACAAATGCAAGTCGCCGGTTCG
CCCCATGCGTGCAGTCGAATCTGTTGTCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATG
AACTCCATATGCTTAGACTAGGGATGAACTCCGTAAGCCTAAGTAAACCCACGAAACGAGCGTGC
GGGCACTCAATCGGCCAGAGAGGCCGACCGGAGAGGCATAATGCGCAAGCCAGAGATCAACCCGA
TCCCTCTCTGCGTGCTACCAATAC
Found at i:15447499 original size:26 final size:26
Alignment explanation
Indices: 15447470--15447522 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15447460 CCGATCTGCT
15447470 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15447496 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15447522 C
1 C
15447523 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15448104 original size:711 final size:699
Alignment explanation
Indices: 15446566--15448278 Score: 1827
Period size: 711 Copynumber: 2.4 Consensus size: 699
15446556 TGTTGATCCC
* *
15446566 GCTACCACAACCCTCAGTCTGGCTGGGGTGTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCAGTCTGGCTGGGCT-TAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
15446631 CCATGAAATGGGCGTGCGGGCGCTCAGCTGACCGAAGAGGTAGAATACGTAAGCC-GAGGATCAA
65 CCATGAAATGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGTAGAATACGTAAGCCAGA-GATCGA
* ** *
15446695 CCCGGTCCTTCCCTGCATGCTACCGATCCTGCTGCTGGTCCTACTGCCACAACCTTCGATCCGGT
129 CTCAAT-C--CCCTGCATGCTACCGAT-CTGCTG-TGGTCCTACTGCCACAACCCTCGATCCGGT
* * * * *
15446760 TTGATATTAGACTGGGAATGAACTTCATATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCC
189 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * **
15446825 AACCCACGAAACGAGCGTACGGACGCTCTGCCGGTCGAAGAGGCAGAATGTGCAAGTCGGGGACC
254 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCG-AGAGGCAGAATGCACAAGTCGGGGACC
*
15446890 GCCTCGATCCCGCCTGCATGCTCTCGATCATACTGCAGCAACCCCCGATCCGGTCTGATCTTAGA
318 GCCTCGATCCCGCCTGCATGCTCTCGATCATACTACAGCAACCCCCGATCCGGTCTGATCTTAGA
* * * * * * * *
15446955 TTGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCGCTGAGTCGGACGG
383 TGGGAATGAACTTCGTATGCCTAAG-CAAACCATGAAACGAGCGCTCGAGCGCGGAGTAGGACGC
* * * * ** * *
15447020 AAAGACATAATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCTTACTGTCGTAACCCTCTGTCCAA
447 AAAGACAGAATCAGCCCGATCCCCCCTACGTGCTGTCAATCTCACTACCATAACCCTCGGTCCAA
* * **
15447085 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGT
512 TCTGATCTTAGACTGGCAATGAACTCCATATGCTCAGACTGGGGATGAACTCCATATGCCTAAGT
* *
15447150 AAACCCATGAAACGAGGTTGCGGGCACTTAGTCGGTCGGAGAGGTCGGCCGGAGAGGCATAATGC
577 AAACCCACGAAACGAGGTTGCGGGCACTTAGTCGCTCGGAGAGGTCGGCCGGAGAGGCATAATGC
* *
15447215 GCAAGCCAGAGATCAACCCGATCCCTCTCTGCGTGCTATCGATACTACTACTGGTCCT
642 GCAAGCCAGAGATCAACCCGATCCCTCTCTGCGTGCTACCGATACTACTACCGGTCCT
* * * * *
15447273 GC-ATCCATAACCTTCGGTTTGGCTAGGGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAA
1 GCTA-CCACAACCCTCAGTCTGGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * * * *
15447337 CCCATGAAACGAGTGTG-TTGTGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAGAGATCGA
64 CCCATGAAATGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGTAGAATACGTAAGCCAGAGATCGA
* * * * *
15447401 CTCAATCCCCTAAGCTTGCTATCGATCTTGCTGTTGGTCCTGCTGCCACAACCCTCAATCCGATC
129 CTCAATCCCCT--GCATGCTACCGATC-TGCTG-TGGTCCTACTGCCACAACCCTCGATCCGGTC
* *
15447466 TGCTCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
190 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * *
15447531 ACCTACGAAACGAGCGTGCGGGCACTCAGTCGATCGTAGAGGCAGAATGCACAAG-CTGGGGATC
255 ACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCG-AGAGGCAGAATGCACAAGTC-GGGGACC
* * * * * * *
15447595 GACC-CGATCCC-CCTTGCATGCTGTCGATCTTGCTACCGTAACCCTCGATCTGGTCTGATCTTA
318 G-CCTCGATCCCGCC-TGCATGCTCTCGATCATACTACAGCAACCCCCGATCCGGTCTGATCTTA
* ** *
15447658 GACTGGGAATGAACTTCGTATGCCTAAG-AAACGAGTG-TGCGGGCGCT-GAGCCAGCCGGAG-A
381 GA-TGGGAATGAACTTCGTATGCCTAAGCAAACCA-TGAAACGAGCGCTCGAG-C-G-CGGAGTA
* * * * **
15447719 GGCATAATGCATAAGGCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGGTCTCACTACCATAA
441 GG----ACGCA-AAGACA-GAATCAGCCCGATCCCCCCTACGTGCTGTCAATCTCACTACCATAA
* ** * *
15447784 CTCTCGGTCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTCAGTCTGGGGATGAACTCC
500 CCCTCGGTCCAATCTGATCTTAGACTGGCAATGAACTCCATATGCTCAGACTGGGGATGAACTCC
* * * *
15447849 ATATGCCTAAGTTAACCCACGAAACGAGCG-TGCGGGCGCTTAGTTGCTCGGAGAGGTCGGTCGG
565 ATATGCCTAAGTAAACCCACGAAACGAG-GTTGCGGGCACTTAGTCGCTCGGAGAGGTCGGCCGG
* * * * * * *
15447913 AGAGGCATAATGCGCAA-CCTGGGGATCAGCTCGATCCC-CATCTGTGTGCTACCGATTCTGCTA
629 AGAGGCATAATGCGCAAGCC-AGAGATCAACCCGATCCCTC-TCTGCGTGCTACCGATACTACTA
15447976 CCGGTCCT
692 CCGGTCCT
* * * *
15447984 GCTACTACAACCCTCAGTCCGACTGGGACTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAAC
1 GCTACCACAACCCTCAGTCTGGCTGGG-CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* *
15448049 CCATGAAATGAGCATGCAGGCGCTCAGCCGATCGGAGAGGTAGAAT-CGTAAGCCAGGGATCGAC
65 CCATGAAATGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGTAGAATACGTAAGCCAGAGATCGAC
* * * *
15448113 TCGATCTCCCCTGCATGCTACCGATC--C-----TACTACTG---CAACCCTCGGTCTGGTCTGA
130 TC-A-ATCCCCTGCATGCTACCGATCTGCTGTGGTCCTACTGCCACAACCCTCGATCCGGTCTGA
* *
15448168 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACC
193 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
15448233 CATGAAACGAGTGTGCGAGCGCTCAGTCGGCCGAGAGGCAGAATGC
258 CACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAGAGGCAGAATGC
15448279 GTAAGCCAGG
Statistics
Matches: 830, Mismatches: 148, Indels: 65
0.80 0.14 0.06
Matches are distributed among these distances:
698 13 0.02
699 103 0.12
702 6 0.01
703 7 0.01
704 14 0.02
705 209 0.25
706 65 0.08
707 66 0.08
708 5 0.01
709 3 0.00
710 11 0.01
711 296 0.36
712 26 0.03
713 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (699 bp):
GCTACCACAACCCTCAGTCTGGCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAATGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGTAGAATACGTAAGCCAGAGATCGACT
CAATCCCCTGCATGCTACCGATCTGCTGTGGTCCTACTGCCACAACCCTCGATCCGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGTCGGTCGAGAGGCAGAATGCACAAGTCGGGGACCGCCTCGAT
CCCGCCTGCATGCTCTCGATCATACTACAGCAACCCCCGATCCGGTCTGATCTTAGATGGGAATG
AACTTCGTATGCCTAAGCAAACCATGAAACGAGCGCTCGAGCGCGGAGTAGGACGCAAAGACAGA
ATCAGCCCGATCCCCCCTACGTGCTGTCAATCTCACTACCATAACCCTCGGTCCAATCTGATCTT
AGACTGGCAATGAACTCCATATGCTCAGACTGGGGATGAACTCCATATGCCTAAGTAAACCCACG
AAACGAGGTTGCGGGCACTTAGTCGCTCGGAGAGGTCGGCCGGAGAGGCATAATGCGCAAGCCAG
AGATCAACCCGATCCCTCTCTGCGTGCTACCGATACTACTACCGGTCCT
Found at i:15449918 original size:26 final size:26
Alignment explanation
Indices: 15449880--15449932 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15449870 GGCTCAAACT
*
15449880 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15449906 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15449932 C
1 C
15449933 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15450305 original size:163 final size:158
Alignment explanation
Indices: 15449902--15450305 Score: 411
Period size: 159 Copynumber: 2.5 Consensus size: 158
15449892 ATGAACTCCG
*
15449902 TATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT
1 TATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT
* * * * * * *
15449967 CAGTCGGCCAGAGAGCCAGAATGCGCAAGCCGAGGATCGACCTGGTTTCCCTCTACGTGCTGCCG
66 CAGTCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTTCCCCCCTACGTACTACCG
* *
15450032 GTCTCATTGCCACAACCCTCGGTCCGGCT
131 ATCTCA-TGCCACAACCCTCGATCCGGCT
*** * * * * *
15450061 GGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCT
1 TATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT
* * * * * * *
15450126 CAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGG-TCCCCCCTGCGTACTACCG
66 CAGTCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTTCCCCCCTACGTACTACCG
15450190 ATGCTGC-TGCCACAACCCTCGATCCGATTTGATCT
131 AT-CT-CATGCCACAACCCTCGATCCG----G--CT
* * * * * *
15450225 TATGCTTAGA-TTGGGAAT-AACTCCGTATGCCTAAGTCAACCCACGACACGAGTGTACGGGTGC
1 TATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC
15450288 TCAGTCGGTCAGAGAGGC
65 TCAGTCGGTCAGAGAGGC
15450306 CGACCAGAGA
Statistics
Matches: 195, Mismatches: 41, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
158 33 0.17
159 94 0.48
160 1 0.01
162 1 0.01
163 52 0.27
164 14 0.07
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
TATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT
CAGTCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTTCCCCCCTACGTACTACCG
ATCTCATGCCACAACCCTCGATCCGGCT
Found at i:15450817 original size:26 final size:26
Alignment explanation
Indices: 15450779--15450831 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15450769 CTGGTCTGAT
15450779 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
15450805 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTATATG
15450831 C
1 C
15450832 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:15451676 original size:26 final size:26
Alignment explanation
Indices: 15451647--15451699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15451637 CCGGTCGGAT
15451647 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15451673 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15451699 C
1 C
15451700 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15451980 original size:159 final size:159
Alignment explanation
Indices: 15451673--15452048 Score: 375
Period size: 159 Copynumber: 2.4 Consensus size: 159
15451663 ACTCCGTATG
* * * * **
15451673 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTTTGC
1 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * ** * * * *
15451738 CCGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGTCTGGTCCCCACATGTGTGCTGTCGATCC
66 CCGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCACATGCGTGCCGTCGATCC
* * * *
15451803 TGCTACCGCAACCTTCGAT-CTGGTCCAA
131 CGCTACCACAACCTTCGATCCAGCTCCAA
* *
15451831 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTGA
1 -CTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * * *
15451895 G-CCGATTGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCC-CTCTGCGTGCCGTCG
64 GCCCG-TCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCAC-ATGCGTGCCGTCG
* * ***
15451958 GTCCCGCTGCCACAA-CTCTCGATCCAGCTGGGA
127 ATCCCGCTACCACAACCT-TCGATCCAGCTCCAA
* * **
15451991 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTTGAAACGAGCGTGCGGGC
1 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
15452049 ACTTAGTCGG
Statistics
Matches: 176, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 7 0.04
159 164 0.93
160 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CCGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCACATGCGTGCCGTCGATCC
CGCTACCACAACCTTCGATCCAGCTCCAA
Found at i:15452179 original size:26 final size:26
Alignment explanation
Indices: 15452149--15452201 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15452139 CCAGTCCGTT
*
15452149 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGACTAGAG-ATGAACTCAGTATG
15452175 CTTAGACTAGAGATGAACTCAGTATG
1 CTTAGACTAGAGATGAACTCAGTATG
15452201 C
1 C
15452202 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAGATGAACTCAGTATG
Found at i:15452912 original size:26 final size:26
Alignment explanation
Indices: 15452874--15452926 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15452864 GGCTCAAACT
15452874 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15452900 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15452926 C
1 C
15452927 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15454059 original size:26 final size:25
Alignment explanation
Indices: 15454018--15454069 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15454008 CCGGTTTGAT
*
15454018 CTTAGACTAGAATGAACTCTGTATG
1 CTTAGACTAGAATGAACTCCGTATG
*
15454043 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TAGAATGAACTCCGTATG
15454069 C
1 C
15454070 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCGTATG
Found at i:15454701 original size:184 final size:184
Alignment explanation
Indices: 15454354--15454723 Score: 483
Period size: 184 Copynumber: 2.0 Consensus size: 184
15454344 TCTGGCTGGG
* * * * *
15454354 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCATACAGGCACTCAG
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAA
* * *
15454419 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCTGCGTGCTACCGATCC
66 CCGACCGAACAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCCCCTGCGTGCTACCGATCC
*
15454484 TGCTGCCGCAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCGCAACCCTCGATTCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * *
15454538 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAA
* * * * * * **
15454603 CCGATCGAACAGGCATAATGCATAAGTCAGGGATCGACCCGATCCCTTCCC-GCGTGTTGTCGAT
66 CCGACCGAACAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCC--CCCTGCGTGCTACCGAT
* * * *
15454667 CCTGCTGCCGCAACCCTTGATTTG-TTCGATCTTAGACTGGGAATGAACTCCGTAT
129 CCTGCTGCCGCAACCCTCGATTCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
15454722 GC
1 GC
15454724 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
184 125 0.79
185 31 0.19
186 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (184 bp):
GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAA
CCGACCGAACAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCCCCTGCGTGCTACCGATCC
TGCTGCCGCAACCCTCGATTCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15454831 original size:158 final size:158
Alignment explanation
Indices: 15454548--15455039 Score: 373
Period size: 158 Copynumber: 3.1 Consensus size: 158
15454538 GCTTAGAAAT
* * *
15454548 GGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGTGCAGGCGCTCAACCGATCGAAC
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCGATCGAAC
* * *
15454613 AGGCATAATGCATAAGTCAGGGATCGACCCGATCCCTTCCCGCGTGTTGTCGATCCTGCTGCCGC
66 AGGCATAATGCACAAGTCAGGGATCCACCCGATCCCTTCCCGCGTGCTGTCGATCCTGCTGCCGC
15454678 AACCCTTGATTTGTTCGATCTTAGACTG
131 AACCCTTGATTTGTTCGATCTTAGACTG
* * * * * * *
15454706 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTGAGCCGATCTG-A
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCGATC-GAA
* ** * * * *
15454770 GAGGCATAATGTGCAAGTCAGGGATCCATCCGATCCC-TCTCTGCGTGCTGTCGGTCTTGCTGCC
65 CAGGCATAATGCACAAGTCAGGGATCCACCCGATCCCTTC-CCGCGTGCTGTCGATCCTGCTGCC
* * ** *** * ** *
15454834 CCAAACCTCAATCCAATTGGGGCTTAAACAT-
129 GCAACCCTTGAT-TTGTTCGATCTTAGAC-TG
* * * * ** * * *
15454865 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGATTGGAC
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCGATCGAAC
* * * ** * * * * * **
15454930 AGGTAGAATGTACAAG-CTAGGGATGGACCCGGTCCC-TCCTGCATGCTATCGATCCTACTATCG
66 AGGCATAATGCACAAGTC-AGGGATCCACCCGATCCCTTCCCGCGTGCTGTCGATCCTGCTGCCG
* ** * * *
15454993 CAACCCTCGATCCGATCTGATCTTAGATTT
130 CAACCCTTGATTTGTTC-GATCTTAGACTG
15455023 GGAATGAACTCCATATG
1 GGAATGAACTCCATATG
15455040 TTTAGACTGG
Statistics
Matches: 258, Mismatches: 68, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
157 5 0.02
158 161 0.62
159 91 0.35
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (158 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCGATCGAAC
AGGCATAATGCACAAGTCAGGGATCCACCCGATCCCTTCCCGCGTGCTGTCGATCCTGCTGCCGC
AACCCTTGATTTGTTCGATCTTAGACTG
Found at i:15454940 original size:159 final size:158
Alignment explanation
Indices: 15454538--15454985 Score: 404
Period size: 158 Copynumber: 2.8 Consensus size: 158
15454528 AACTCCGTAT
* *
15454538 GCTTAGAA-ATGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGTGCAGGCGCTCA
1 GCTTA-AACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
15454602 ACCGATCGAACAGGCATAATGCATAAGTCAGGGATCGACCCGATCCCTTCCCGCGTGTTGTCGAT
65 GCCGATTGGACAGGCATAATGTACAAGTCAGGGATCCACCCGATCCCTTCCCGCGTGCTGTCGAT
* * ** ***
15454667 CCTGCTGCCGCAACCCTTGATTTGTTCGA
130 CCTGCTGCCCCAAACCTCAATCAATTCGA
* * * * * * * * *
15454696 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTGA
1 GCTTAAACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
15454760 GCCGATCT-GAGAGGCATAATGTGCAAGTCAGGGATCCATCCGATCCC-TCTCTGCGTGCTGTCG
65 GCCGAT-TGGACAGGCATAATGTACAAGTCAGGGATCCACCCGATCCCTTC-CCGCGTGCTGTCG
* * * *
15454823 GTCTTGCTGCCCCAAACCTCAATCCAATTGGG
128 ATCCTGCTGCCCCAAACCTCAAT-CAATTCGA
* * *
15454855 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * *
15454920 CCGATTGGACAGGTAGAATGTACAAG-CTAGGGATGGACCCGGTCCC-TCCTGCATGCTATCGAT
66 CCGATTGGACAGGCATAATGTACAAGTC-AGGGATCCACCCGATCCCTTCCCGCGTGCTGTCGAT
15454983 CCT
130 CCT
15454986 ACTATCGCAA
Statistics
Matches: 226, Mismatches: 56, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 130 0.58
159 91 0.40
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATTGGACAGGCATAATGTACAAGTCAGGGATCCACCCGATCCCTTCCCGCGTGCTGTCGATC
CTGCTGCCCCAAACCTCAATCAATTCGA
Found at i:15454985 original size:501 final size:495
Alignment explanation
Indices: 15453982--15455137 Score: 1163
Period size: 501 Copynumber: 2.3 Consensus size: 495
15453972 GGTTCTTCTG
* * * * * *
15453982 TCGATCCTGCTGCAGCAACCCTCAGTCCGGTTTGATCTTAGACTAGAATGAACTCTGTATGCTTA
1 TCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGAATGAACTCCGTATGCTTA
* * * * *
15454047 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGTC--T
66 GAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGAT
* * *
15454110 GCCAGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCAGATCCCCCCTGCGTGCTGTCGATCCTAC
130 GCCAGACAGGCAGAATGCACAAGTCGAGGATCGACCAGATCCCCCCTGCGTGCTGTCGATCCTAC
* *
15454175 TGCCACAATCTTTGATCCGATCTTAAATCAAGAATCAGATCCGTATGCCTAAGACAACCCACGAA
195 TGCCACAACCCTTGATCCGATCTTAAATCAAGAATCAGATCCGTATGCCTAAGACAACCCACGAA
** * *
15454240 ATGAGCGTTTGGGCAGTGAGCCAGCTAGAGAGGCATAATGTGCAAGCCGGTGATCAGCTCGATCC
260 ATGAGCGTACGGGCACTGAGCCAGCTAGAGAGGCATAATGTGCAAGCAGGTGATCAGCTCGATCC
* * *** *
15454305 CCCTCTGTATGATATCGGTCTCGCTGCCACAACCCATGGTCTGGCTGGGGCTTAGACATGGAATG
325 CCCTCTGCATGATATCGGTCTCGCTGCCACAACCCA-GATCCAACTGGGGCTTAAACATGGAATG
* * * *
15454370 AACTCCGTATGCCTAAGCCATCCCATGAAACGAGCATACAGGCACTCAGCCGACCGGAGAGGCAG
389 AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAGCCGACCGGACAGGCAG
* *
15454435 AATGCGCAAGCCAGGGATCGACCCAATCCCCCCTGCGTGCTA
454 AATGCACAAGCCAGGGATCGACCCAATCCCCCCTGCATGCTA
* * **
15454477 CCGATCCTGCTGCCGCAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
1 TCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACT-GGAATGAACTCCGTATGCTT
* * *
15454542 AGAAATGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGTGCAGGCGCTCAACCGA
65 AGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGA
* * * * *
15454607 T-CGA-ACAGGCATAATGCATAAGTC-AGGGATCGACCCGATCCCTTCCC-GCGTGTTGTCGATC
129 TGCCAGACAGGCAGAATGCACAAGTCGA-GGATCGACCAGATCCC--CCCTGCGTGCTGTCGATC
* * * * ** * *
15454668 CTGCTGCCGCAACCCTTGATTTGTTCGATCTTAGA-CTGGGAATGA-ACTCCGTATGCCTAAGTC
191 CTACTGCCACAACCCTTGA----TCCGATCTTAAATC-AAGAATCAGA-TCCGTATGCCTAAGAC
* *
15454731 AACCCATGAAATGAGCGTACGGGCACTGAGCCGATCT-GAGAGGCATAATGTGCAAGTCAGG-GA
250 AACCCACGAAATGAGCGTACGGGCACTGAGCC-AGCTAGAGAGGCATAATGTGCAAG-CAGGTGA
* * * * * * * *
15454794 TCCATC-CGATCCCTCTCTGCGTGCTGTCGGTCTTGCTGCCCCAAACCTCA-ATCCAATTGGGGC
313 T-CAGCTCGATCCCCCTCTGCATGATATCGGTCTCGCTGCCAC-AACC-CAGATCCAACTGGGGC
* * * * **
15454857 TTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCC
375 TTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAGCC
** * * * * ** *
15454922 GATTGGACAGGTAGAATGTACAAGCTAGGGATGGACCCGGTCCCTCCTGCATGCTA
440 GACCGGACAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCCCCTGCATGCTA
* ** * * * *
15454978 TCGATCCTACTATCGCAACCCTCGATCCGATCTGATCTTAGATTTGGAATGAACTCCATATGTTT
1 TCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGA-CTGGAATGAACTCCGTATGCTT
* * * ** * *
15455043 AG-ACTGGGGATGAACTTCGTATGCCTAAGTTAACCCATGAAACAAGCGTGCGGACGCTCAGCCG
65 AGAAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-CGCTCAGCCG
* * * *
15455107 A--CCAGAGAGGCAGGATGCGCAAGTCGGGGAT
128 ATGCCAGACAGGCAGAATGCACAAGTCGAGGAT
15455138 TGAACGGGTG
Statistics
Matches: 533, Mismatches: 106, Indels: 38
0.79 0.16 0.06
Matches are distributed among these distances:
495 37 0.07
496 102 0.19
497 30 0.06
498 4 0.01
500 8 0.02
501 336 0.63
502 14 0.03
503 2 0.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (495 bp):
TCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGAATGAACTCCGTATGCTTA
GAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGATG
CCAGACAGGCAGAATGCACAAGTCGAGGATCGACCAGATCCCCCCTGCGTGCTGTCGATCCTACT
GCCACAACCCTTGATCCGATCTTAAATCAAGAATCAGATCCGTATGCCTAAGACAACCCACGAAA
TGAGCGTACGGGCACTGAGCCAGCTAGAGAGGCATAATGTGCAAGCAGGTGATCAGCTCGATCCC
CCTCTGCATGATATCGGTCTCGCTGCCACAACCCAGATCCAACTGGGGCTTAAACATGGAATGAA
CTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAGCCGACCGGACAGGCAGAA
TGCACAAGCCAGGGATCGACCCAATCCCCCCTGCATGCTA
Found at i:15456119 original size:159 final size:159
Alignment explanation
Indices: 15455763--15456265 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 159
15455753 AACTTCGTAT
* *
15455763 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * *
15455827 GCTAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCTCGATCCCC-CCTACTTGCTGTCGAT
65 GCCAGCCGAAGAGGCAGAATGCGAAAGTCAGGGATCGACCCGATCCCCTCCTGCGTGCTGTCGAT
* * ***
15455891 CTTGCTGCCCCAACCCTCGGTACAATC-CGA
130 CTTGCTGCCACAACCCTCGAT-CTGGCTCGA
* * * * * * *
15455921 TCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
15455986 CCGGCCAAAGAGGCATAATGCGAAAGTCAGGGATCGACCCGATCCCCTTCTGCGTGCTGTCGGTC
66 CCAGCCGAAGAGGCAGAATGCGAAAGTCAGGGATCGACCCGATCCCCTCCTGCGTGCTGTCGATC
** * *
15456051 CCGCTGCCACAACCCTCGATCTGGCTGGG
131 TTGCTGCCACAACCCTCGATCTGGCTCGA
* * * * *
15456080 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCTGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
15456144 GCCAGCCGAAGAGGCAGAATGCGTAAG-CCGAGGATCGACCCGAT-CCCTCCAGCGTGCTGTCGA
65 GCCAGCCGAAGAGGCAGAATGCGAAAGTCAG-GGATCGACCCGATCCCCTCCTGCGTGCTGTCGA
* ** * *
15456207 TCTTGCAGCCGTAACCCTCGATCTGGTTTGA
129 TCTTGCTGCCACAACCCTCGATCTGGCTCGA
* *
15456238 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
15456266 TTGGACTGGG
Statistics
Matches: 277, Mismatches: 62, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 158 0.57
159 116 0.42
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAGCCGAAGAGGCAGAATGCGAAAGTCAGGGATCGACCCGATCCCCTCCTGCGTGCTGTCGATC
TTGCTGCCACAACCCTCGATCTGGCTCGA
Found at i:15456636 original size:26 final size:26
Alignment explanation
Indices: 15456607--15456659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15456597 CCGATTTGAT
15456607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
15456633 CTTAGAGTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15456659 C
1 C
15456660 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15457220 original size:26 final size:27
Alignment explanation
Indices: 15457171--15457221 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
15457161 TTCTGATCTA
*
15457171 AGACTAGGGAATGAACTTCGTATGCTT
1 AGACTAGGGAATGAACTTCATATGCTT
* *
15457198 AGACT-GGGGATGAACTTTATATGC
1 AGACTAGGGAATGAACTTCATATGC
15457222 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (27 bp):
AGACTAGGGAATGAACTTCATATGCTT
Found at i:15457929 original size:26 final size:26
Alignment explanation
Indices: 15457891--15457961 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 26
15457881 GGCTCAAAAT
15457891 CTTAGAC-TGGGAATGCAA-TCCATACA
1 CTTAGACAT-GGAATG-AACTCCATACA
* **
15457917 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATACA
15457943 CTTAGACATGGAATGAACT
1 CTTAGACATGGAATGAACT
15457962 TCGTATGCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
25 2 0.05
26 37 0.93
27 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATACA
Found at i:15457966 original size:26 final size:26
Alignment explanation
Indices: 15457917--15457969 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15457907 AATCCATACA
15457917 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
15457943 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15457969 C
1 C
15457970 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15459016 original size:26 final size:26
Alignment explanation
Indices: 15458984--15459036 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15458974 CCAATATGAT
*
15458984 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTCGGG-ATGAACTCCGTATG
15459010 CTTAGACTCGGGATGAACTCCGTATG
1 CTTAGACTCGGGATGAACTCCGTATG
15459036 C
1 C
15459037 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGGATGAACTCCGTATG
Found at i:15459668 original size:26 final size:26
Alignment explanation
Indices: 15459630--15459706 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
15459620 GGCTCAAAAT
*
15459630 CTTAGAC-TGGGAATGAAATCTGTATG
1 CTTAGACAT-GGAATGAAATCCGTATG
*
15459656 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAAATCCGTATG
*
15459682 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAAATCCGTAT
15459707 ACCTAAGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:15460391 original size:26 final size:24
Alignment explanation
Indices: 15460355--15460433 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 24
15460345 CCGATCCTAT
15460355 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGG-ATGAACT-CGTATG
*
15460381 CTTAGACTGGGGAGGAACTCAGTATG
1 CTTAGACT-GGGATGAACTC-GTATG
15460407 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACT-CGTATG
15460433 C
1 C
15460434 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 42 0.89
27 4 0.09
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (24 bp):
CTTAGACTGGGATGAACTCGTATG
Found at i:15461645 original size:26 final size:26
Alignment explanation
Indices: 15461616--15461668 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15461606 CCGGTCTGAT
*
15461616 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15461642 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15461668 C
1 C
15461669 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15462026 original size:26 final size:26
Alignment explanation
Indices: 15461997--15462052 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15461987 TCGGTCTGAT
15461997 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
*
15462023 CTTAGACATGGAATGGACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
15462049 CTTA
1 CTTA
15462053 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:15462377 original size:159 final size:158
Alignment explanation
Indices: 15462022--15462520 Score: 404
Period size: 158 Copynumber: 3.2 Consensus size: 158
15462012 AACTCTGTAT
* * * * * *
15462022 GCTTAGACATGGAATGGACTCTGTATGCTTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * *
15462087 CCCGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGTCCAGTCCCCCCTGCGTGCTGTCGATCC
66 CCCGTCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATCC
* *
15462152 TACTACCGCAACACTCAGTCTGGTCTGA
131 TACTACCACAACACTCAGTCCGGTCTGA
* * * * * * *
15462180 TCTTAGAC-TAGGAATGAACTCCGTATGACTAAGTCAACCCATAAAATGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * *
15462244 G-CCGATC-GAAGAGGCATAATGCACAAGCCGGGGATTAGCCCAGTCCTCCTCTGCGTGCTGTC-
65 GCCCG-TCAG-AGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCC-CCCCTGCGTGCTGTCG
* * * *
15462306 AGT-CTCACTGCCACAACTCTCATTCCGGT-TGGG
127 A-TCCT-ACTACCACAACACTCAGTCCGGTCT-GA
* * * * ***
15462339 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGTTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
15462404 -TCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGTGTGCTGCCGATC
66 CCCG-TCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATC
* ** * * *
15462468 CTGCTGTCACAACCCTC-GATCCAGTCCGA
130 CTACTACCACAACACTCAG-TCCGGTCTGA
*
15462497 TCTTAGAC-TGGGAATGAACTCCGT
1 GCTTAGACAT-GGAATGAACTCCGT
15462521 TCGCTTAGAC
Statistics
Matches: 267, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 6 0.02
158 138 0.52
159 121 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCCGTCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATCC
TACTACCACAACACTCAGTCCGGTCTGA
Found at i:15462916 original size:26 final size:26
Alignment explanation
Indices: 15462878--15462930 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15462868 CCCGTCAAAT
15462878 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15462904 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15462930 C
1 C
15462931 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15463024 original size:882 final size:874
Alignment explanation
Indices: 15461110--15463459 Score: 2691
Period size: 882 Copynumber: 2.7 Consensus size: 874
15461100 CCGTGGCTCA
15461110 AAATCTTAGA-TCGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
1 AAATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* *** * *
15461174 AACCCATGAAATGAACGTGCAAGCGCTCAGTCAGTCAGAGAGGCAGAATGCGCAAATCGGGGATC
65 AACCCATGAAATGAGCGTGTGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATC
* * * * *
15461239 GACCCGAT-CCCCCTGTACGTGCTGTTGATCCTACTGCCTCAACCCTCAGTCCAATCCGATCTTA
130 GGCTCGATCCCCCCTG--CGTGCTGTCGATCCTACTGCCACAA-CCTCAGTCCGATCCGATCTTA
* * * *
15461303 GACTGGGAATGAACTTTGTATGCATAAGTTAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGC
192 GACTGGGAATGAACTTCGTATGC-TAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAGCCGGT
* * * *
15461368 CAAAGGGGCATAATGCACAAGCCAAGGATTGGCCCGATCCCCCTCTGTGTGCTGCTGATCCTGCT
256 CGAAGAGGCATAATGCACAAGCCAAGGATTGGCCCGATCCCCCTCTGCGTGCTGCAGATCC-GCT
* *
15461433 GCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
320 GCCACAACCCTC-ATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * *
15461498 CGAAACGGGCGTACGGGTGCTCAACCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCCTG
384 CGAAACGGGCGTACGGGTGCTC-AGCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCG
* * * * * * * * *
15461563 ATCCCTCCTACGTGCTGCTGATCCTACTACCGCAACTCTTGGTCCGGTCTGATCTTAGATTGGGA
448 ATCCCCCCTGCGTGCTGCCGATCCTGCT-GCGCAACCCTTGATCCAGTCCGATCTTAGATTGGGA
** *
15461628 ATGAACTCCGTATGCTTAGACTGGGGATGAAC-TCTGTATGCCTAAGTCAACCCACGAAATGGAC
512 ATGAACTCCGTATGCTTAGACTGGGGATGAACTTC-GTATGCCTAAGTCAACCCAC-AAAACGAG
* * * *** * *
15461692 CGTGCGGGTGCTCAGCCAGTCGGAGAGGTCGGTTGGAGAGGCATAATGCGCAAGCTGCAGATCAG
575 CGTGCGAGCGCTCAGCCAGTCGAAGAGGTCGACCGAAGAGACATAATGCGCAAGCTGCAGATCAG
* * * ** *
15461757 CCCGATCTTCCTCTGCGTCCTGCCAATCCCGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGGC
640 CCCAATC-TCCTCTACGTCCTGCCAATCCCGCTACCAGTCCTGCTGCCACAACCCTCGATCCAGC
* ** * **
15461822 TAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGTGTGCGGGTGC
704 TAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGCGGAAGC
* ** * * * * *
15461887 TCAGCTAGCCGGAGAGGTAGAATGTGCAAGTCGGGGATCGGCCCGATCCCTCTTGCGTGCTGTCG
769 TAAGCTAGCCAAAGAGGTAGAATGCGCAAGTCGGGCATCGACCCGATCCCTCCTACGTGCTGTCG
* * * *
15461952 ATCCTGCTACTGGTCCTGCTACTGCAACCCTCGATTCGGTC
834 ATCCTGCTACTGGTCCTGCTACCGCAACCCTAGATCCCGTC
** * * * *
15461993 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGGACTCTGTATGCTTAAGCCA
1 AAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * *
15462058 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCCGTCAGAGAGGCAGAATGCGCAAG-CTGGGGATC
66 ACCCATGAAATGAGCGTGTGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGTC-GGGGATC
* * * * * *
15462122 GG-TCCAGTCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACACTCAGTCTGGTCTGATCTTAG
130 GGCTCGA-TCCCCCCTGCGTGCTGTCGATCCTACTGCCACAAC-CTCAGTCCGATCCGATCTTAG
* * ** * *
15462186 ACTAGGAATGAACTCCGTATGACTAAGTCAACCCATAAAATGAGTGTGCGGGCACTGAGCCGATC
193 ACTGGGAATGAACTTCGTATG-CTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAGCCGGTC
** * * *
15462251 GAAGAGGCATAATGCACAAGCCGGGGATTAGCCC-AGTCCTCCTCTGCGTGCTGTCAG-TCTCAC
257 GAAGAGGCATAATGCACAAGCCAAGGATTGGCCCGA-TCCCCCTCTGCGTGCTG-CAGATC-CGC
* *
15462314 TGCCACAACTCTCATTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
319 TGCCACAACCCTCA-TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * *
15462379 ACGAAACGGGCATGCGGTTGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCC
383 ACGAAACGGGCGTACGGGTGCTCAG-CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCC
* * * * *
15462444 GGTCCCCCCTGTGTGCTGCCGATCCTGCTGTCACAACCCTCGATCCAGTCCGATCTTAGACTGGG
447 GATCCCCCCTGCGTGCTGCCGATCCTGCTG-CGCAACCCTTGATCCAGTCCGATCTTAGATTGGG
*
15462509 AATGAACTCCGT-TCGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTAAACCCACAAAACGAG
511 AATGAACTCCGTAT-GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAG
** *
15462573 CGTGCGAGCGCTCAATC-GATCGAAGAGGTCGACCGAAGAGACATAATGTGCAAG-T-CGAGGAT
575 CGTGCGAGCGCTCAGCCAG-TCGAAGAGGTCGACCGAAGAGACATAATGCGCAAGCTGC-A-GAT
* * * *
15462635 CAGGCCAATGC-CCTTCTATGTGCTGTCAATCCCGCTACCAGTCCTGCTGCCACAACCCTC-AGT
637 CAGCCCAAT-CTCC-TCTACGTCCTGCCAATCCCGCTACCAGTCCTGCTGCCACAACCCTCGA-T
* *
15462698 CCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGTG
699 CCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGCG
* * * * * *
15462763 GAAGTTAAGCTGGCCAAAGAGGTAGAATGCGTAAGTTGGGCATCGACCCGGTCTCTCCCTACGTG
764 GAAGCTAAGCTAGCCAAAGAGGTAGAATGCGCAAGTCGGGCATCGACCCGATCCCT-CCTACGTG
* * * *
15462828 -TG-CTGATCTTGCTATTGGTCCTGC-AGCCGTAACCCTAGGTCCCGTC
828 CTGTC-GATCCTGCTACTGGTCCTGCTA-CCGCAACCCTAGATCCCGTC
*
15462874 AAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 AAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
15462939 ACCCATAAAATGAGCATGTGGGCGCTCAACCTG-CTGAAGAGGTAGAATGCGCAAGTCGGGGACC
66 ACCCATGAAATGAGCGTGTGGGCGCTCAGCCAGTCAG-AGAGGCAGAATGCGCAAGTCGGGGATC
*
15463003 GGCTCGATCCCCCCATGCGTGCTGTCGATCCTGCTGCCACAACCTTCAGTCCGATCCGATCTTAG
130 GGCTCGATCCCCCC-TGCGTGCTGTCGATCCTACTGCCACAACC-TCAGTCCGATCCGATCTTAG
* * * * * *
15463068 ACTGGGAATGAACTTCGTATGCCTAAGTCAACCGACGAAACGAGTGTTCGGCCGCAGAACCGGTC
193 ACTGGGAATGAACTTCGTATG-CTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAGCCGGTC
* ** * *
15463133 GGAGAGGCATAATGTGCAAGCCAAGGATTGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCGTTG
257 GAAGAGGCATAATGCACAAGCCAAGGATTGGCCCGATCCCCCTCTGCGTGCTGCAGAT-CCGCTG
* * *
15463198 CCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
321 CCACAACCCTC-ATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * ** *
15463263 AAAATGGGTGTACGGGTGCTCAGCCAGTCAGAGAGACAGAATGCGCAAGCTGGGGATCGGCCCGA
385 GAAACGGGCGTACGGGTGCTCAGCGA-TCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGA
* * *
15463328 TCCCCCTTGCGTGCTGTCGATCCTGCTGCTGCAACCCTTGATCCAATCCGATCTTAGATTGGGAA
449 TCCCCCCTGCGTGCTGCCGATCCTGCTGC-GCAACCCTTGATCCAGTCCGATCTTAGATTGGGAA
* * * * * * ***
15463393 TGAACTCCATATACTTAGATTGGGGATGAACTCCATATGCGTAAGTCAACCCGTGAAACGAGCGT
513 TGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGT
15463458 GC
578 GC
15463460 AAACGTTCAG
Statistics
Matches: 1225, Mismatches: 207, Indels: 71
0.82 0.14 0.05
Matches are distributed among these distances:
879 1 0.00
880 10 0.01
881 358 0.29
882 727 0.59
883 121 0.10
884 8 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (874 bp):
AAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCATGAAATGAGCGTGTGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCG
GCTCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCTCAGTCCGATCCGATCTTAGACT
GGGAATGAACTTCGTATGCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAGCCGGTCGAAG
AGGCATAATGCACAAGCCAAGGATTGGCCCGATCCCCCTCTGCGTGCTGCAGATCCGCTGCCACA
ACCCTCATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
GGCGTACGGGTGCTCAGCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCC
TGCGTGCTGCCGATCCTGCTGCGCAACCCTTGATCCAGTCCGATCTTAGATTGGGAATGAACTCC
GTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCGC
TCAGCCAGTCGAAGAGGTCGACCGAAGAGACATAATGCGCAAGCTGCAGATCAGCCCAATCTCCT
CTACGTCCTGCCAATCCCGCTACCAGTCCTGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGCGGAAGCTAAGCTAGCCAA
AGAGGTAGAATGCGCAAGTCGGGCATCGACCCGATCCCTCCTACGTGCTGTCGATCCTGCTACTG
GTCCTGCTACCGCAACCCTAGATCCCGTC
Found at i:15463200 original size:159 final size:158
Alignment explanation
Indices: 15462904--15463400 Score: 407
Period size: 159 Copynumber: 3.1 Consensus size: 158
15462894 ACTCCATATG
* * * * *
15462904 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCATGT--GGGCGCTC
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAG--TGTACGGCCGCAC
* * ** * ** * *
15462966 AACCTG-CTGAAGAGGTAGAATGCGCAAGTCGGGGACCGGCTCGATCCCCC-CATGCGTGCTGTC
63 AACCAGTCAG-AGAGACAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTC-TGCGTGCTGTC
15463029 GATCCTGCTGCCACAACCTTCAGTCCGATCCGAT
126 GATCCTGCTGCCACAACCTTCAGTCC-ATCCGAT
* * * * * * *
15463063 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCGACGAAACGAGTGTTCGGCCGCAGAAC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTACGGCCGCACAAC
* * * * * * *
15463128 CGGTCGGAGAGGCATAATGTGCAAGCCAAGGATTGGCCCGATCCCCCTCTGCGTGCTGCCGATCC
66 CAGTCAGAGAGACAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
* * * * * * **
15463193 CGTTGCCACAACCCTCGGTCCAGCTAGGG
131 TGCTGCCACAACCTTCAGTCCATC-CGAT
* * ** * *
15463222 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTACGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTACGGCCGCACAA
***
15463286 CCAGTCAGAGAGACAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCT-TGCGTGCTGTCGATC
65 CCAGTCAGAGAGACAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
** *
15463350 CTGCTGCTGCAACCCTTGA-TCCAATCCGAT
130 CTGCTGCCACAA-CCTTCAGTCC-ATCCGAT
*
15463380 CTTAGATTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
15463401 ATATACTTAG
Statistics
Matches: 264, Mismatches: 64, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 47 0.18
159 209 0.79
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTACGGCCGCACAAC
CAGTCAGAGAGACAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCTTCAGTCCATCCGAT
Found at i:15463409 original size:26 final size:26
Alignment explanation
Indices: 15463380--15463430 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15463370 CCAATCCGAT
15463380 CTTAGATTGGGAATGAACTCCATATA
1 CTTAGATTGGGAATGAACTCCATATA
*
15463406 CTTAGATTGGGGATGAACTCCATAT
1 CTTAGATTGGGAATGAACTCCATAT
15463431 GCGTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATA
Found at i:15463926 original size:12 final size:12
Alignment explanation
Indices: 15463909--15463936 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
15463899 GAGGGATAGG
15463909 GGGCCAATATAA
1 GGGCCAATATAA
15463921 GGGCCAATATAA
1 GGGCCAATATAA
15463933 GGGC
1 GGGC
15463937 TTAGATTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.32, T:0.14
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:15464290 original size:159 final size:158
Alignment explanation
Indices: 15463949--15464438 Score: 496
Period size: 159 Copynumber: 3.1 Consensus size: 158
15463939 AGATTGGGGT
* * * *
15463949 TGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGC-GGCACTCAGCTGGTCGGAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGC
* * * ** *
15464013 ATAATGCGCAAGCC-GGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCCTGCTGCTGCATCC
66 ATAATGCGCAA-CCTGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAACC
* * *
15464077 GTCGGTCTGGTCTGATCTTAGATTGGAAA
130 CTCGGTCTGGTCTGAGCTTAGAATGGAAA
*
15464106 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGC
** *
15464171 ATAATGTACAACCTGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGA-CCCGCTGCCACAAC
66 ATAATGCGCAACCTGGGGATCGGCCTGATCCCCC-CTGCGTGCTGTC-GATCCCGCTGCCACAAC
*
15464235 CCTCGGTCTGG-CTGGGGCTTAGACATGG-AA
129 CCTCGGTCTGGTCT-GAGCTTAGA-ATGGAAA
* * * * * *
15464265 TGAACTACC-TATGCCTAAG-CTAACCCAGGAAACGGGCGTGCGGGCGCTCAACCAGCCGAAGAG
1 TGAACT-CCGTATGCCTAAGTC-AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
* * ** * *
15464328 GCAGAATGCGCAAGCTGGGGATCGGTCC-GATCCCCCCTGCGTGCTG-CTGATCATGCTGTCGCA
64 GCATAATGCGCAACCTGGGGATCGG-CCTGATCCCCCCTGCGTGCTGTC-GATCCCGCTGCCACA
* * * * * *
15464391 ACCCTCGATGTGTTC-GATCTTAGATTGGGAA
127 ACCCTCGGTCTGGTCTGAGCTTAGAATGGAAA
*
15464422 TGAACTTCGTATGCCTA
1 TGAACTCCGTATGCCTA
15464439 GACTGGGGAT
Statistics
Matches: 278, Mismatches: 42, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
156 4 0.01
157 68 0.24
158 77 0.28
159 120 0.43
160 9 0.03
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGC
ATAATGCGCAACCTGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAACCC
TCGGTCTGGTCTGAGCTTAGAATGGAAA
Found at i:15464440 original size:26 final size:26
Alignment explanation
Indices: 15464411--15464464 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
15464401 TGTTCGATCT
* *
15464411 TAGATTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
15464437 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
15464463 TA
1 TA
15464465 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:15465454 original size:158 final size:158
Alignment explanation
Indices: 15465155--15465557 Score: 370
Period size: 158 Copynumber: 2.6 Consensus size: 158
15465145 AACTCCGTAT
* * * *
15465155 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGCGGGTG-TTCA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAG-CAACCCACGAAACGAGCGTGCGGGCGCTTCA
* * * * * * * *
15465219 ACCTTCCGGAGAGGTAGAATGTGAAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGTTGTCAATC
65 ACCGTCCGAAGAGGCAGAATGCGAAAGACGAGGATCAACCCGGTCCCCCCTGCATGCTGTCAATC
**
15465284 CTGCTGCTACAACCCTCAGTCCAGTCAGA
130 CCACTGCTACAACCCTCAGTCCAGTCAGA
* * *
15465313 TCTTAGATAGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTT-A
1 GCTTAGACATGGAATGAACTCCGTATGCATAAG-CAACCCACGAAACGAGCGTGCGGGCGCTTCA
* * * * **
15465377 GCAGGT-CGAAGAGGCATAATGCGTAAGACGAGGATCAACCCGGTCCCCCTCTGCATGCT-TCGG
65 AC-CGTCCGAAGAGGCAGAATGCGAAAGACGAGGATCAACCCGGTCCCCC-CTGCATGCTGTCAA
** * ** *
15465440 TCCCACTAGC-ACAACCCTTGGTCCGGTTGGG
128 TCCCACT-GCTACAACCCTCAGTCCAGTCAGA
* * **
15465471 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCTAACCCATGAAACGAGCGTTTGGGCGC-TCA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGC-AACCCACGAAACGAGCGTGCGGGCGCTTCA
* * *
15465535 GCCGAT-TGGAGAGGCAGAATGCG
65 ACCG-TCCGAAGAGGCAGAATGCG
15465558 CAAGCCAGGG
Statistics
Matches: 197, Mismatches: 41, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 182 0.92
159 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCAACCCACGAAACGAGCGTGCGGGCGCTTCAA
CCGTCCGAAGAGGCAGAATGCGAAAGACGAGGATCAACCCGGTCCCCCCTGCATGCTGTCAATCC
CACTGCTACAACCCTCAGTCCAGTCAGA
Found at i:15466368 original size:26 final size:26
Alignment explanation
Indices: 15466330--15466382 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15466320 CCAGTCCGAT
*
15466330 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15466356 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
15466382 C
1 C
15466383 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15466485 original size:184 final size:184
Alignment explanation
Indices: 15466171--15466532 Score: 442
Period size: 184 Copynumber: 2.0 Consensus size: 184
15466161 TCTGGCTAGG
* * *
15466171 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCTCGAAATAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCTCGAAACAAGCGTACGGCCACTCAG
* ** ** * * *
15466236 CCGACTGGAGAGGCAGAATGCACAAGCTGGGGATCGTTCTGATCCCCCTTACGTGCTCCCGATCT
66 CCGACTAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGTACTCCCGATCT
* *
15466301 TACTGCCGCAA-CCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTTGTAT
131 TACTGCAGCAACCCTT-GGTCCAGTCCGATCTTAGACCGGGAATGAACTTTGTAT
* * *
15466355 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCAT-GAAACGAGCGTACGGCCGCTT
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCC-TCGAAACAAGCGTACGGCCACTC
* * * **
15466418 AGCTGACTAGAGAGGCAGAATGCGCTAGCCAGGGATCGACCCGATCCCCCCTACGTACTGTCGAT
64 AGCCGACTAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGTACTCCCGAT
** * * *
15466483 CTTGGTGCAGCAACCCTTGGTTCGGTCCGATCTTAGTCCGGGAATGAACT
129 CTTACTGCAGCAACCCTTGGTCCAGTCCGATCTTAGACCGGGAATGAACT
15466533 CCGTATGAAC
Statistics
Matches: 149, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 143 0.96
185 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCTCGAAACAAGCGTACGGCCACTCAG
CCGACTAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGTACTCCCGATCT
TACTGCAGCAACCCTTGGTCCAGTCCGATCTTAGACCGGGAATGAACTTTGTAT
Found at i:15466867 original size:26 final size:26
Alignment explanation
Indices: 15466831--15466883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15466821 CCGATCCGAT
*
15466831 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
15466857 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15466883 C
1 C
15466884 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15467474 original size:184 final size:184
Alignment explanation
Indices: 15467156--15467506 Score: 472
Period size: 184 Copynumber: 1.9 Consensus size: 184
15467146 CTGTCGATCC
* * * *
15467156 TGCTGCTGGTCCTGCTATCGCAACCCTCGATCTGGTCTGATCTTAGTCTAGGAATGAACTCCGTA
1 TGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGTCTAGGAATGAACTCCGTA
* * * * *
15467221 TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAGCGGGCGTGCAGGCACTCA
66 TACTTAGACATGGAATAAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
*
15467286 GCCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCTCTCTGCG
131 GCCGACCAGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCTCTCTGCG
* * * *
15467340 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAT-TGGGAATGAACTCTGT
1 TGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAG-TCTAGGAATGAACTCCGT
* * * *
15467404 ATACTTAGAC-TAGGGATAAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
65 ATACTTAGACAT-GGAATAAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACT
* * * *
15467468 CAGCCGACCAGAGGGGCAGGATGCGCAAGCCTGGGATCG
129 CAGCCGACCAGAGAGGCAGAATGCGCAAACCGGGGATCG
15467507 AACGGGTGGT
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.01
184 141 0.99
185 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (184 bp):
TGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGTCTAGGAATGAACTCCGTA
TACTTAGACATGGAATAAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
GCCGACCAGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCTCTCTGCG
Found at i:15469362 original size:158 final size:157
Alignment explanation
Indices: 15468860--15469424 Score: 546
Period size: 158 Copynumber: 3.6 Consensus size: 157
15468850 GGTTACACAT
* *
15468860 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * * **
15468925 AGGTAGAATGCGTAAG-TCAGTGATCAGCCCGATCCCCC-TACGGGCTATCGATCCTGCTACTGC
66 AGGTAGAATGCGCAAGCT-GGGGATCGGCCCG-TCCCCCTTGCGTGCTGTCGATCCTGCTACCAC
* * *
15468988 GACCCTCGGTCTGGTCTGATCTTAGACTG
129 AACCCTCGGTCCGATCTGATCTTAGACTG
* * * * * * * * ** * *
15469017 AGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCACTAAGTTGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * * *
15469082 AGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCTCTTTGTGTGCTGCCGGTCTTGC-AGCCA
66 AGGTAGAATGCGCAAGCTGGGGATCGGCCC-GTCCC-CCTTGCGTGCTGTCGATCCTGCTA-CCA
* **
15469146 CAGCCCTCGGTCCGA-CTAGGGCTTAGACAT-
128 CAACCCTCGGTCCGATCT-GATCTTAGAC-TG
* * * *
15469176 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGACCGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
*
15469241 AGGTAGAATGCGCAAGCTGGGGATTGGCCCAGTCCCCCTTGCGTGCTGTCGATCCTGCTACCACA
66 AGGTAGAATGCGCAAGCTGGGGATCGGCCC-GTCCCCCTTGCGTGCTGTCGATCCTGCTACCACA
* * *
15469306 ACCCTTGGTCCAATCTGATCTTAGGCTG
130 ACCCTCGGTCCGATCTGATCTTAGACTG
* * *
15469334 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
** * * *
15469399 AGACAGGATGAGCAAGCCGGGGATCG
66 AGGTAGAATGCGCAAGCTGGGGATCG
15469425 AATGGATGGT
Statistics
Matches: 320, Mismatches: 78, Indels: 19
0.77 0.19 0.05
Matches are distributed among these distances:
157 79 0.25
158 123 0.38
159 117 0.37
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGTAGAATGCGCAAGCTGGGGATCGGCCCGTCCCCCTTGCGTGCTGTCGATCCTGCTACCACAA
CCCTCGGTCCGATCTGATCTTAGACTG
Found at i:15476830 original size:159 final size:158
Alignment explanation
Indices: 15476473--15476881 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 158
15476463 ATATGATTCA
* * * * *
15476473 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAATGAGCGTTCGGGTGCTGA
1 ATCTTAGACTGGGAATGAACAC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * *
15476538 GCCGGTCGGAGAGGCATAATGTGTAAATCGGGGTTAGACCCGATCCCCCTCGATGTGCTGTCGGT
65 GCCGGTCGGAGAGGCAGAATGTGTAAATCGGGATTAGACCCGATCCCCCTCGATGTGCTGTCGAT
** * *
15476603 CCCGCTGCCACAACCTTCGATCCGACTGG
130 CCCGCTAACACAACCCTCGATCAGACTGG
** * * * * * * *
15476632 GGCTTAGACAT-GGAAGGAACTCCTTATACCTACA-CCAACCCACGAAACGGGCGTGCGGGCGCT
1 ATCTTAGAC-TGGGAATGAAC-ACGTATGCCTA-AGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * *
15476695 CAGCCGATCGGAGAGGCAGAATGTGTAAATCAGGGATTCGGCCCGATCCCCC-CTG-TGTGCTGT
63 CAGCCGGTCGGAGAGGCAGAATGTGTAAATC-GGGATTAGACCCGATCCCCCTC-GATGTGCTGT
** *
15476758 CGATCTTGCTAACGCAACCCTCGATCAGATCT-G
126 CGATCCCGCTAACACAACCCTCGATCAGA-CTGG
* *
15476791 ATCTTAGACTGGGAATGAACAACGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGTTCA
1 ATCTTAGACTGGGAATGAAC-ACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * *
15476856 ACCGGTCGAAGAGGTAGAATCTGTAA
65 GCCGGTCGGAGAGGCAGAATGTGTAA
15476882 GTTGGGGACC
Statistics
Matches: 199, Mismatches: 43, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
158 2 0.01
159 174 0.87
160 23 0.12
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (158 bp):
ATCTTAGACTGGGAATGAACACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAGAATGTGTAAATCGGGATTAGACCCGATCCCCCTCGATGTGCTGTCGATC
CCGCTAACACAACCCTCGATCAGACTGG
Found at i:15477283 original size:26 final size:26
Alignment explanation
Indices: 15477254--15477306 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15477244 CCGATCCGAT
15477254 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
15477280 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15477306 C
1 C
15477307 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15477946 original size:26 final size:26
Alignment explanation
Indices: 15477917--15477995 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
15477907 GGCTGAAACT
15477917 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
* *
15477943 CTTAGACATGGAATGAAATTTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
*
15477969 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCTGTATG
15477995 C
1 C
15477996 CTAAGCCAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:15478257 original size:158 final size:158
Alignment explanation
Indices: 15477968--15478262 Score: 380
Period size: 158 Copynumber: 1.9 Consensus size: 158
15477958 AAATTTGTAT
* *
15477968 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGTGCTCAA
* * * * *
15478033 CCGCCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCTCGGTACCTCTCTGCATGCTGTTAGTCC
66 CCGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCTCGATACCTCTCTGCATGCTGTCAATCC
15478098 TGCTGCCACAACGTTCGGTCCGGCTGGG
131 TGCTGCCACAACGTTCGGTCCGGCTGGG
* * * * * *
15478126 GCTTAGACATTGATTGAACTCCCTATGCCTAAGCTAACCCACAAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGTGCTCAA
* * * *
15478191 CCGACTGGAGAGGCAGAATGCGCAAGCCAGGGATTGGC-CTGATCACC-C-CTGCGTGCTGTCAA
66 CCG-CCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCTC-GAT-ACCTCTCTGCATGCTGTCAA
*
15478253 TCCTGTTGCC
128 TCCTGCTGCC
15478263 GCAATCCTCA
Statistics
Matches: 116, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
158 81 0.70
159 32 0.28
160 3 0.03
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGTGCTCAA
CCGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCTCGATACCTCTCTGCATGCTGTCAATCC
TGCTGCCACAACGTTCGGTCCGGCTGGG
Found at i:15478898 original size:158 final size:158
Alignment explanation
Indices: 15478530--15479456 Score: 609
Period size: 159 Copynumber: 5.8 Consensus size: 158
15478520 CTTAGACATT
* * * * * * * *
15478530 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAATACGGGCGTTCAGCCGGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTAAGCCGATCGAAGA
* * * * * * * * * * * **
15478595 GGCAGAATACACAAGCTGGGGACCGACTCGATCCCCCTAC--C-TACTGTCGATCCTGCTGCCAT
66 GGCATAATGCGCAAGCTAGGGATCGGCCCGATCCCCCT-CTGCGTGCCGCCGATCCTGCTACCGC
* * * *
15478657 AACCCTCAGTTCGGTCCGATTTTAGACTGG
130 AACCCTCGGTCCGAT-CGATCTTAGACTGG
* * * * *
15478687 GAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGA-TCGGACACTAAGCCGATCGAAA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-ATTCGGGCGCTAAGCCGATCGAAG
* * * **
15478751 AAGCATAATGCGTAAGCTAGGGATCGGCCCGATCCCCCTCTGCGTGCCGCCGA-CCTCGTTGTCG
65 AGGCATAATGCGCAAGCTAGGGATCGGCCCGATCCCCCTCTGCGTGCCGCCGATCCT-GCTACCG
*
15478815 CAACCCTTGGTCCGATTCGATCTTAGACTGG
129 CAACCCTCGGTCCGA-TCGATCTTAGACTGG
** * *
15478846 GAATG-ACTTTGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCGCTAAGCC-AGTCGGAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTAAGCCGA-TCGAAG
* * **
15478909 AGGCAGAATGCGCAAGAC-AGGGATCGGCCCGATCCCCCT-TGCGTGCTGTTGATCCTGCTACCG
65 AGGCATAATGCGCAAG-CTAGGGATCGGCCCGATCCCCCTCTGCGTGCCGCCGATCCTGCTACCG
*
15478972 TAACCCTCGGTCCGATCTGATCTTAGACTGG
129 CAACCCTCGGTCCGATC-GATCTTAGACTGG
* * * * * **
15479003 GAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTAAGCCGATCGAAGA
* * * * *
15479068 GGCATAATGCGCAAGCTGGGGATCAGTCTGGTCCCCCTCTGCATGCTGTTGATCTCGCTAACGAT
66 GGCATAATGCGCAAGCTAGGGATCGGCCCGAT-CCCC-CT-C-TGC-G-TG--C-CGC---CGAT
* * * ** *
15479133 CCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGGCAT-G
119 CCTGCTACCGCAACCCTCGGTCC-GATCGATCTTAGAC-TGG
* * * * * * * ** * * *
15479174 GAATGAACTCTGTATTCCTAAGCCAACCCATGAAACAAGCGTACGGAAGCTCAGCCGGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTAAGCCGATCGAAGA
* * * * * * * * * * * *
15479239 GGCAGAATGCGCAAG-TCAGAGACCGACCCGGTCCCCTTCTACGTGCTGTCGATCCTACTGCGGC
66 GGCATAATGCGCAAGCT-AGGGATCGGCCCGATCCCCCTCTGCGTGCCGCCGATCCTGCTACCGC
* *
15479303 AACCCTCAGTCTGATCTGATCTTAGACTGG
130 AACCCTCGGTCCGATC-GATCTTAGACTGG
* * * * * * * ** * *
15479333 GAATGAACTCTGTAAGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGGGTCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTAAGCCGATCGAAGA
* * **
15479398 GGCATAATGCACAAGC-CGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCCTGCT
66 GGCATAATGCGCAAGCTAG-GGATCGGCCCGATCCCCCTCTGCGTGCCGCCGATCCTGCT
15479457 GTTGGTCCTG
Statistics
Matches: 599, Mismatches: 137, Indels: 66
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 129 0.22
158 162 0.27
159 169 0.28
160 3 0.01
162 1 0.00
163 4 0.01
164 1 0.00
165 4 0.01
166 1 0.00
167 3 0.01
168 2 0.00
169 1 0.00
170 5 0.01
171 108 0.18
172 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTAAGCCGATCGAAGA
GGCATAATGCGCAAGCTAGGGATCGGCCCGATCCCCCTCTGCGTGCCGCCGATCCTGCTACCGCA
ACCCTCGGTCCGATCGATCTTAGACTGG
Found at i:15479274 original size:171 final size:171
Alignment explanation
Indices: 15478959--15479292 Score: 361
Period size: 171 Copynumber: 2.0 Consensus size: 171
15478949 GCGTGCTGTT
** * *
15478959 GATCCTGCTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAAGCCTAA
1 GATCCTGCTACCACAACCCTCGGTCCGAGCTGAGCTTAGACTGGGAATGAACTCCGTAAGCCTAA
* * * ** * * *
15479024 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCATAATGCGCAAGCTGGGG
66 GCCAACCCACGAAACAAGCGTACGGAAGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCTAGAG
* * * * *
15479089 ATCAGTCTGGTCCCCCTCTGCATGCTGTTGATCTCGCTAAC
131 ACCAGCCCGGTCCCCCTCTACATGCTGTCGATCTCGCTAAC
* * * **
15479130 GATCCTGCTACCACAACCCTCGGTCCG-GCTAGGGCTTAGGCAT-GGAATGAACTCTGTATTCCT
1 GATCCTGCTACCACAACCCTCGGTCCGAGCT-GAGCTTAGAC-TGGGAATGAACTCCGTAAGCCT
* * *
15479193 AAGCCAACCCATGAAACAAGCGTACGGAAGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-TCA
64 AAGCCAACCCACGAAACAAGCGTACGGAAGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCT-A
* *
15479257 GAGACC-GACCCGGTCCCCTTCTACGTGCTGTCGATC
128 GAGACCAG-CCCGGTCCCCCTCTACATGCTGTCGATC
15479293 CTACTGCGGC
Statistics
Matches: 132, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
170 4 0.03
171 127 0.96
172 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (171 bp):
GATCCTGCTACCACAACCCTCGGTCCGAGCTGAGCTTAGACTGGGAATGAACTCCGTAAGCCTAA
GCCAACCCACGAAACAAGCGTACGGAAGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCTAGAG
ACCAGCCCGGTCCCCCTCTACATGCTGTCGATCTCGCTAAC
Found at i:15479532 original size:26 final size:26
Alignment explanation
Indices: 15479494--15479546 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15479484 CCGGTTCGAT
15479494 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
15479520 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
15479546 C
1 C
15479547 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15480035 original size:158 final size:156
Alignment explanation
Indices: 15479520--15480049 Score: 446
Period size: 159 Copynumber: 3.3 Consensus size: 156
15479510 ACTCTGTATG
* * * *
15479520 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGG-GCCCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGTG--CTCAG
* * *
15479584 TCGGTCGGAGAGGT-AGAATACACAAG-TCAGGGACCGACCCGGTCCCCCTCTGCGTGCTGTCGA
64 TCGGTCGGAGA-GTCAGAATGCACAAGCT-GGGGATC-A-CCGGTCCCCCTCTGCGTGCTGTCGA
* *
15479647 TCCTACTGCCGCAACCCTCGGT-CTGGTCTGAT
125 TCCTACTGCCGCAACCCTCGGTCCAGCTC-GAT
* ** * * **
15479679 CTTAGAC-TAGGAATGAACTCCGTAAGCCTAAGTCAACCCATGAAATGGGCGTACGGGTGCTGGG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGC-GGTGCTCAG
** * * * * *
15479743 TCGACCGGAGAGGCATAATGCACAAGCCGGGGATCAGTCCGATCCCCCTCTGCATGCTGTCGATC
64 TCGGTCGGAGAGTCAGAATGCACAAGCTGGGGATCA--CCGGTCCCCCTCTGCGTGCTGTCGATC
* * ** * **
15479808 CCACTGCCACAACCCTCGGTCTGGCTGGGG
127 CTACTGCCGCAACCCTCGGTCCAGCTCGAT
* * ** *
15479838 CTTAGACATGGAATGAACTCCCTATACGGAAGCTC-ACCCACAAAATGAGCGTGCGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-TCAACCCACAAAATGAGCGTGCGGTGCTCAGT
* * *
15479902 CGGTCAGAGAGTCAGAATGCACAAGCTGGGGATCTACCTGGTCCCCC-CTTGTGTGCTATCGATC
65 CGGTCGGAGAGTCAGAATGCACAAGCTGGGGATC-ACC-GGTCCCCCTC-TGCGTGCTGTCGATC
* * * * *
15479966 CTGCTGCTGTAACCCTCGATCCAGTTCGAT
127 CTACTGCCGCAACCCTCGGTCCAGCTCGAT
** *
15479996 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGC
15480050 AGACGCTCAG
Statistics
Matches: 286, Mismatches: 71, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
157 6 0.02
158 117 0.41
159 155 0.54
160 7 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGTGCTCAGTC
GGTCGGAGAGTCAGAATGCACAAGCTGGGGATCACCGGTCCCCCTCTGCGTGCTGTCGATCCTAC
TGCCGCAACCCTCGGTCCAGCTCGAT
Found at i:15480703 original size:26 final size:26
Alignment explanation
Indices: 15480665--15480717 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15480655 GGCTCAAACT
15480665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15480691 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15480717 C
1 C
15480718 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15481093 original size:159 final size:156
Alignment explanation
Indices: 15480690--15481121 Score: 519
Period size: 159 Copynumber: 2.7 Consensus size: 156
15480680 AACTCCGTAT
** * * * *
15480690 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGCTGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGAGGC-GCTCAG
* * * *
15480755 TCGACCGGAGAGGTAGAATACGCA-AGCTGAGGATCGACCCGGTCCCCCTCTGCGTGCTACCGAT
65 CCGA-CGGAGAGGTAGAATGCGCAGAGC-GGGGATCG-CCCGATCCCCCTCTGCGTGCTACCGAT
15480819 CCCGCTGCCACAACCTTCGGTCTGGCTGGG
127 CCCGCTGCCACAACCTTCGGTCTGGCTGGG
* * * *
15480849 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTG-AGGCGCTCAG
* * * *
15480914 CCGATCGGAGAGGTAAAATGCGTAAGAGC-GGGATCGCCTCGATCCCCTTCTGCGTGCTACTGAT
65 CCGA-CGGAGAGGTAGAATGCG-CAGAGCGGGGATCGCC-CGATCCCCCTCTGCGTGCTACCGAT
* *
15480978 CTCGCTGCCACAACCCTT-GGTCTGGTTGGG
127 CCCGCTGCCACAA-CCTTCGGTCTGGCTGGG
*
15481008 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTG-AGGCGCTCAG
* * *
15481073 CCGGCAGGAGAGGCAGAATGCGCAGGGCGGGGATCGGCCCGATCCCCCT
65 CCGAC-GGAGAGGTAGAATGCGCAGAGCGGGGATC-GCCCGATCCCCCT
15481122 GAGTGCTGCC
Statistics
Matches: 233, Mismatches: 32, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
158 7 0.03
159 213 0.91
160 10 0.04
161 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGAGGCGCTCAGC
CGACGGAGAGGTAGAATGCGCAGAGCGGGGATCGCCCGATCCCCCTCTGCGTGCTACCGATCCCG
CTGCCACAACCTTCGGTCTGGCTGGG
Found at i:15481742 original size:26 final size:26
Alignment explanation
Indices: 15481702--15481753 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15481692 TGATCTGATG
15481702 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
15481728 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
15481754 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:15482290 original size:26 final size:26
Alignment explanation
Indices: 15482239--15482291 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15482229 GGCTCAAAAT
*
15482239 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15482265 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15482291 C
1 C
15482292 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15482940 original size:25 final size:26
Alignment explanation
Indices: 15482892--15482941 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
15482882 CCAGTTCTAT
15482892 CTTAGACTAGGAATGAACTATGTATG
1 CTTAGACTAGGAATGAACTATGTATG
* *
15482918 CTTAGACT-GGGATGAACTTTGTAT
1 CTTAGACTAGGAATGAACTATGTAT
15482942 TCCTAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTATGTATG
Found at i:15483832 original size:26 final size:26
Alignment explanation
Indices: 15483796--15483848 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15483786 TCAGTCTGAT
*
15483796 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15483822 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15483848 C
1 C
15483849 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15484555 original size:26 final size:26
Alignment explanation
Indices: 15484517--15484569 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15484507 GGCTTAAAAT
*
15484517 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15484543 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15484569 C
1 C
15484570 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15484705 original size:906 final size:902
Alignment explanation
Indices: 15482733--15484728 Score: 2904
Period size: 906 Copynumber: 2.2 Consensus size: 902
15482723 TCTGACTGGG
* * * * *
15482733 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * *
15482798 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCC-AGTCCCCCCTACGTGCCGTCGATC
66 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCCTGCGTGCTGTCGATC
* * * **
15482862 CTGCTGTCGCAACCCTCGGTCCAGTTCTATCTTAGACTAGGAATGAACTATGTATGCTTAGACTG
130 CTGCT-TCGCAACCCTCGGT-CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*** * * * * * *
15482927 GGATGAACTTTGTATTCCTAGTCAACCCATGAAACGAACATACGGGCGTTCAGCCGACCAGAGGG
193 GGATGAACTCCATATGCCTAGTCAACCCACGAAACGAACATACGAGCGCTCAACCGACCAGAGAG
* *
15482992 GCAGGATGCGCAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGGACATCTTCATATTTCTG
258 GCAGGATGCACAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
*
15483057 CCATGACAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
323 CCATGACAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCCTAAGCCTTCATGAGAAG
*
15483122 TTTAATGGCAAGATGACCAGTTTTCTATTTTTCAGGATTTTCAAAACTTTTTGCGGTTCAAGATT
388 TTTAATGGCAAGACGACCAGTTTTCTATTTTTCAGGATTTTCAAAACTTTTTGCGGTTCAAGATT
*
15483187 TTTTAAAATTTTTTTAGAGAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTT
453 TTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTT
* ** *
15483252 TGGCATGCAAAAAAAATTCAGTTAAAAAATCGAAGTGGAGAAGATTTTGTGAAAGTTTGAAAAAA
518 TAGCATGCAAAAAAAATTCAGCCAAAAAATCCAAGTGGAGAAGATTTTGTGAAAGTTTGAAAAAA
* **
15483317 GTGTCACCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTCCTT
583 GTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAATAAAATCTCAAATGCTCCTT
* *
15483382 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
648 AAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
15483447 ACCCATTGCGCATCATGTGTGCACACCCCCCGGCCCCCCCAATCATCGAAACCCCCAATGCCGCT
713 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCATCGAAACCCCCAATGCCGCC
* * *
15483512 GGTTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCCGGGTGAAAAAAATACGGCACCAGCACA
778 GGTTAAGCTCTCCGACGATGCTCCGACGATGCTGCCCCGGGAGAAAAAAATACGGCACCAGCACA
*
15483577 TGCTCGAGCCCAGCATGTGCACCATAGCTCAAAATCTTAGACTGGGAATGAACTCCGTAT
843 TGCCCGAGCCCAGCATGTGCACCATAGCTCAAAATCTTAGACTGGGAATGAACTCCGTAT
* * *
15483637 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * *
15483702 CCGGTCGTAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * *
15483767 TGCTGCGGCAACCATCGGTTCAGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGG
131 TGCTTC-GCAACCCTCGG-TCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-G
*
15483832 GGATGAACTCCATATGCCTAAGTCAACCCACGAAAC-AAGCGTGA-GAGCGCTCAACCGACCAGA
193 GGATGAACTCCATATGCCT-AGTCAACCCACGAAACGAA-CAT-ACGAGCGCTCAACCGACCAGA
* * *
15483895 GAGGCAGGATGCACAAGTCGGGGATCGAATGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTT
255 GAGGCAGGATGCACAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGCACATCTTCATATTT
* *
15483960 CTGCCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCCTAAGCCTTCATGAG
320 CTGCCATGACAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCCTAAGCCTTCATGAG
** * * ** ***
15484025 AAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGG
385 AAGTTTAATGGCAAGACGACCAGTTTTCTATTTTTCAGGATTTTCAAAACTTTTTGCGGTTCAAG
*
15484090 ATTTTTTAAAATTTTTTTAGAAAGTGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTT
450 ATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTT
** * * **
15484155 TTTTAGTGTGCACAAAAAATTCAGCCAAAAACTCCAAGTGGAGAAGATTTTGTGACCGTTTGAAA
515 TTTTAGCATGCAAAAAAAATTCAGCCAAAAAATCCAAGTGGAGAAGATTTTGTGAAAGTTTGAAA
* *
15484220 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCAATAAAATCTCAAATGCTC
580 AAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAATAAAATCTCAAATGCTC
* *
15484285 TTTAA-GGGGTGTGACTTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
645 CTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
15484349 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCCCCAATGCC
710 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCATCGAAACCCCCAATGCC
* * * * **
15484414 GCCGGTTAAGCTCTCTGGCGATGCTCCGGCGATGCTGCTCCGGGAGAAAAAAATGTGGCACCAGC
775 GCCGGTTAAGCTCTCCGACGATGCTCCGACGATGCTGCCCCGGGAGAAAAAAATACGGCACCAGC
* * * *
15484479 ACATGCCCGAGCCCAGCATGTGCACCGTGGCTTAAAATCTTAGACTGGGAATGAACTCTGTAT
840 ACATGCCCGAGCCCAGCATGTGCACCATAGCTCAAAATCTTAGACTGGGAATGAACTCCGTAT
* *
15484542 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * *
15484607 TCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCCTGCGTGGTGTTGAAC
66 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGATC
* * *
15484672 TTGCTATCGCAACCCTCGGATC-GATCCGATCTTATACCGGGAATGAACTCCGTATGC
130 CTGCT-TCGCAACCCTCGG-TCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
15484729 ATAAGTCAAC
Statistics
Matches: 967, Mismatches: 115, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
903 1 0.00
904 163 0.17
905 352 0.36
906 449 0.46
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTTCGCAACCCTCGGTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
TGAACTCCATATGCCTAGTCAACCCACGAAACGAACATACGAGCGCTCAACCGACCAGAGAGGCA
GGATGCACAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCA
TGACAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCCTAAGCCTTCATGAGAAGTTT
AATGGCAAGACGACCAGTTTTCTATTTTTCAGGATTTTCAAAACTTTTTGCGGTTCAAGATTTTT
TAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTAG
CATGCAAAAAAAATTCAGCCAAAAAATCCAAGTGGAGAAGATTTTGTGAAAGTTTGAAAAAAGTG
TCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAATAAAATCTCAAATGCTCCTTAAG
GGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCATCGAAACCCCCAATGCCGCCGGT
TAAGCTCTCCGACGATGCTCCGACGATGCTGCCCCGGGAGAAAAAAATACGGCACCAGCACATGC
CCGAGCCCAGCATGTGCACCATAGCTCAAAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15484844 original size:159 final size:156
Alignment explanation
Indices: 15484543--15485045 Score: 521
Period size: 159 Copynumber: 3.2 Consensus size: 156
15484533 ACTCTGTATG
*
15484543 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
15484608 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCCTGCGTGGTGTTGAACT
65 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCT-CTGCGTGCTG-TGATCC
* **
15484673 TGCTATCGCAACCCTCGGATC-GATCCGAT
128 TACTGCCGCAACCCT-GGATCTGATCCGAT
* * * *
15484702 CTTATACCGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG-
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
15484766 CCAGCCGAAGAGACATAATGCGCAAGCCAGGGATCGGTCCGGTCTCCCTCTGCGTGCTGCTGGTC
65 CGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CCCTCTGCGTGCTG-TGATC
* * * * **
15484831 CCACTGCCACAACCCTTGATCTGA-CTGGGG
127 CTACTGCCGCAACCCTGGATCTGATC-CGAT
* * * * * *
15484861 CTTAGACATGGATTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCGGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* *
15484926 CGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTACCCC-CTGCGTGTTGTCGATCC
65 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTGT-GATCC
* * *
15484990 TACTGCCGCATCCCTTGG-TCTGGTCTGAT
128 TACTGCCGCAACCC-TGGATCTGATCCGAT
*
15485019 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
15485046 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 59 0.21
159 209 0.75
160 8 0.03
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTGATCCTAC
TGCCGCAACCCTGGATCTGATCCGAT
Found at i:15485055 original size:26 final size:26
Alignment explanation
Indices: 15485019--15485074 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15485009 CTGGTCTGAT
15485019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
15485045 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15485071 CTTA
1 CTTA
15485075 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15486598 original size:157 final size:158
Alignment explanation
Indices: 15486292--15486705 Score: 458
Period size: 157 Copynumber: 2.6 Consensus size: 158
15486282 AACTCCGTAT
* * * * * *
15486292 GCTTCGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCATGCGGG-GCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
15486356 CCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTATGCGTGTTGCCAATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTATGCATGCTGCCAATC
* ** ***
15486421 CCGCTGTCAAAACCTCGGTCCGGTTGGG
131 CCGCTGCCAAAACCTCGGTCCAATTCAA
* * * *
15486449 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
15486513 GTCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCA-CCCAGTCCCCC-CTGCATGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTATGCATGCTGCCAAT
* * *
15486576 CCTGCTGCCACAACCCTTGGTCCAATTCAA
130 CCCGCTGCCA-AAACCTCGGTCCAATTCAA
* *
15486606 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15486671 CCGACCAGAGGGGCAGGATGCGCAAGCCGGAGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC
15486706 GAACGGGTGG
Statistics
Matches: 212, Mismatches: 41, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
156 19 0.09
157 155 0.73
158 38 0.18
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTATGCATGCTGCCAATC
CCGCTGCCAAAACCTCGGTCCAATTCAA
Found at i:15487707 original size:26 final size:26
Alignment explanation
Indices: 15487656--15487708 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15487646 TCGGTCTGAT
*
15487656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
15487682 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15487708 C
1 C
15487709 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15488322 original size:157 final size:157
Alignment explanation
Indices: 15488062--15488563 Score: 510
Period size: 157 Copynumber: 3.2 Consensus size: 157
15488052 ACTCCATATG
* * * * *
15488062 CTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCATGAAATGAGCATGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15488126 CCGGTCGGAGAGGCAGAATGCGTAAGCTAAGGATCAGCTCGATCCCCCCTACGTGCTATCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATTAGCTCGATCCCCCCTACGTGCTATCGATCC
* * * *
15488191 TGCTACTGCAACCCTCAGACCGGTCCAAT
130 TGCTGCTGCAACCCTCGGTCCGGT-CGAT
* * * *
15488220 CTTAGACTGGGAAT-AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15488284 CGACCGGAGAGGCATAATGCGCAAGCCATGGATTAGCTCGATCCCCCTCTACGTGC-AACCAGTC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATTAGCTCGATCCCCC-CTACGTGCTATCGA-TC
** * * **
15488348 CTGCTGCCACAACCCTCGGTCTGGATGGGG
129 CTGCTGCTGCAACCCTCGGTCCGG-TCGAT
* * *
15488378 CTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATCGGGCGTGCGGGTGCTCA
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCGCTCA
* * * ** * * *
15488442 ACCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGC-CTGATCCCCCTTGCGTGCTATCGAT
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATTAGCTC-GATCCCCCCTACGTGCTATCGAT
* *
15488506 CCTGCTGCTGCAACCCTCGGTCCAGTTTGAT
128 CCTGCTGCTGCAACCCTCGGTCC-GGTCGAT
*
15488537 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15488564 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 55, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
157 86 0.31
158 52 0.19
159 82 0.29
160 58 0.21
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATTAGCTCGATCCCCCCTACGTGCTATCGATCCT
GCTGCTGCAACCCTCGGTCCGGTCGAT
Found at i:15488498 original size:159 final size:158
Alignment explanation
Indices: 15488061--15488563 Score: 399
Period size: 159 Copynumber: 3.2 Consensus size: 158
15488051 AACTCCATAT
* * * * * *
15488061 GCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCATGAAATGAGCATGCAGGCGCTCA
1 GCTTAGAC-TGGGAAT-AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * * * *
15488125 GCCGGTCGGAGAGGCAGAATGCGTAAGCTAAGGATCAGCTCGATCCCCC-CTACGTGCTATCGAT
64 ACCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTAGCTCGATCCCCCTCTACGTGCAACCGAT
* ** * * * ***
15488189 CCTGCTACTGCAACCCTCAGACCGG-TCCAA
129 CCTGCTGCCACAACCCTCGGTCTGGAT-GGG
* ** * * * *
15488219 TCTTAGACTGGGAATAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAGC
1 GCTTAGACTGGGAATAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * *
15488284 CGACCGGAGAGGCATAATGCGCAAGCCATGGATTAGCTCGATCCCCCTCTACGTGCAACC-AGTC
66 CGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTAGCTCGATCCCCCTCTACGTGCAACCGA-TC
15488348 CTGCTGCCACAACCCTCGGTCTGGATGGG
130 CTGCTGCCACAACCCTCGGTCTGGATGGG
* *
15488377 GCTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATCGGGCGTGCGGGTGCTC
1 GCTTAGACTG-GGAAT-AACTCCCTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCGCTC
* * * * * * *
15488441 AACCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGC-CTGATCCCCCT-TGCGTGCTATCG
63 AACCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTAGCTC-GATCCCCCTCTACGTGCAACCG
** ** * * *
15488504 ATCCTGCTGCTGCAACCCTCGGTCCAGTTTGA
127 ATCCTGCTGCCACAACCCTCGGTCTGGATGGG
* *
15488536 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAAT-AACTCCCTATGC
15488564 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 56, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 84 0.30
158 54 0.19
159 85 0.30
160 56 0.20
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTAGCTCGATCCCCCTCTACGTGCAACCGATCC
TGCTGCCACAACCCTCGGTCTGGATGGG
Found at i:15488566 original size:26 final size:26
Alignment explanation
Indices: 15488537--15488589 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15488527 CCAGTTTGAT
15488537 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15488563 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15488589 C
1 C
15488590 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15494481 original size:26 final size:26
Alignment explanation
Indices: 15494445--15494497 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15494435 CCGGTTCGAT
*
15494445 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
15494471 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15494497 C
1 C
15494498 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15495974 original size:26 final size:26
Alignment explanation
Indices: 15495936--15495988 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15495926 CTAGTCTGAT
*
15495936 CTTAGGCCAGGAATGAACT-TCGTATG
1 CTTAGGCCAGGAATAAACTCT-GTATG
15495962 CTTAGG-CATGGAATAAACTCTGTATG
1 CTTAGGCCA-GGAATAAACTCTGTATG
15495988 C
1 C
15495989 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGGCCAGGAATAAACTCTGTATG
Found at i:15496259 original size:158 final size:159
Alignment explanation
Indices: 15495971--15496939 Score: 704
Period size: 159 Copynumber: 6.1 Consensus size: 159
15495961 GCTTAGGCAT
* * * * * **
15495971 GGAATAAACTCTGTATGCCTAAGCCAACCCATGAAGCAAGCGTGCGGGTGCTCAGTTGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * * * * *
15496036 AGGCAGAATGTC-CAAGCCGAGGATCAGCCCGATCCCCCT-TACGTGCTATCGATCTTGCTACCG
66 AGGCAGAATG-CGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCA
* *
15496099 CAACCCTCGGTCCGGTCCGATCTTAGATTG
130 CAACCCTCGGTCCGGTCTGATCTTAGACTG
* * * ** * * *
15496129 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCAGATGCTGAGCCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * *
15496194 AGGCAGAATGTGTAAGTCGAGGATCGGCCCAGTCCCCCT-TGCATGCTGTCGATCCTGCTGTCGC
66 AGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCAC
* * *
15496258 AACCCTTGGTCTGGTCTGATCTTAGACTA
131 AACCCTCGGTCCGGTCTGATCTTAGACTG
* * * * * * *
15496287 GGAATGAACTCCATATGCCTAAGTCAACGCACGAAACGAGAGTGCGGGCGCTGAGCCGACGGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * * *
15496352 TGGCATAATGTGCAAGT-TAGGGATCGACCTGGTCCCCCTCTGCATGCTGTCGGTCCCACTGCCA
66 AGGCAGAATGCGCAAGTCGA-GGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCA
* * * * **
15496416 AAACCCTCAGTTC-GACTAGGGCTTAGACAT-
130 CAACCCTCGGTCCGGTCT-GATCTTAGAC-TG
* * * * * * *
15496446 GCAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTGCGGGCGCTCAGCC-AGCCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGA-CCGGA
* * * ** * *
15496510 GAGGTAAAATGCGCAAGTCGGGGATCGATCTGGTCCCCCTCTG-AGTGCTGTCGATCCTACTGCT
65 GAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCA-TGCTGTCGATCCTACTGCC
*
15496574 ACAACCCTCGGTCTGGTCTGATCTTAGACTG
129 ACAACCCTCGGTCCGGTCTGATCTTAGACTG
* * * * * * * * * * * *
15496605 GGAATGAACTCTGTATGCATAAGTCAACCAACGAAACGAGCGTACAGGCACTGAGCTGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * * **
15496670 AGGCATAATACGTAAG-CTGAGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGGTCCCGCTGCCA
66 AGGCAGAATGCGCAAGTC-GAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCA
* * **
15496734 CAACCCTCGGTTCGAT-TGGGGCTTAGACAT-
130 CAACCCTCGGTCCGGTCT-GATCTTAGAC-TG
* ** * * * *
15496764 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGCCAACCGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * **
15496829 AGGTAGAATGCGCAAG-CTGAGGATCGGCCTGGTCCCCCT-TGCGTACTGCCGATCCTACTATCA
66 AGGCAGAATGCGCAAGTC-GAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCA
* * **
15496892 GAAACCTCGGTTTGGTCTGATCTTAGACTG
130 CAACCCTCGGTCCGGTCTGATCTTAGACTG
* *
15496922 GGAATGTACTCCATATGC
1 GGAATGAACTCCGTATGC
15496940 TTAGACTGGG
Statistics
Matches: 628, Mismatches: 166, Indels: 34
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.00
158 272 0.43
159 348 0.55
160 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCAC
AACCCTCGGTCCGGTCTGATCTTAGACTG
Found at i:15496601 original size:318 final size:317
Alignment explanation
Indices: 15496225--15496939 Score: 877
Period size: 318 Copynumber: 2.3 Consensus size: 317
15496215 GATCGGCCCA
* * * *
15496225 GTCCCCCTTGCA-TGCTGTCGATCCTGCTGTCGCAACCCTTGGTCTGGTCTGATCTTAGACTAGG
1 GTCCCCCTTG-AGTGCTGTCGATCCTACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGG
* * * * *
15496289 AATGAACTCCATATGCCTAAGTCAACGC-ACGAAACGAGAGTGCGGGCGCTGAGCCGA-CGGGAG
65 AATGAACTCCATATGCATAAGTCAAC-CAACGAAACGAGAGTACAGGCACTGAGCCGATC-GAAG
* ** * * *
15496352 TGGCATAATGTGCAAG-TTAGGGATCGACCTGGTCCCCCTCTGCATGCTGTCGGTCCCACTGCCA
128 AGGCATAATACGCAAGCTGA-GGATCGACCCGATCCCCCTCTGCATGCTGTCGGTCCCACTGCCA
*
15496416 AAACCCTCAGTTCGACTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAA
192 AAACCCTCAGTTCGACTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* ** * * *
15496481 ATAGGTGTGCGGGCGCTCAGCCAGCC-GAAGAGGTAAAATGCGCAAG-TCGGGGATCGATCTG
257 ACAGGCATGCGGGCGCTCAGCCAACCGGAA-AGGTAAAATGCGCAAGCT-GAGGATCGACCTG
15496542 GTCCCCCTCTGAGTGCTGTCGATCCTACTG-CTACAACCCTCGGTCTGGTCTGATCTTAGACTGG
1 GTCCCCCT-TGAGTGCTGTCGATCCTACTGTC-ACAACCCTCGGTCTGGTCTGATCTTAGACTGG
** * *
15496606 GAATGAACTCTGTATGCATAAGTCAACCAACGAAACGAGCGTACAGGCACTGAGCTGATCGAAGA
64 GAATGAACTCCATATGCATAAGTCAACCAACGAAACGAGAGTACAGGCACTGAGCCGATCGAAGA
* * * * * *
15496671 GGCATAATACGTAAGCTGAGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGGTCCCGCTGCCACA
129 GGCATAATACGCAAGCTGAGGATCGACCCGATCCCCCTCTGCATGCTGTCGGTCCCACTGCCAAA
* * * *
15496736 ACCCTCGGTTCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
194 ACCCTCAGTTCGACTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * *
15496801 GGGCATGCGGGTGCTCAGCCAACCGGAAAGGTAGAATGCGCAAGCTGAGGATCGGCCTG
259 AGGCATGCGGGCGCTCAGCCAACCGGAAAGGTAAAATGCGCAAGCTGAGGATCGACCTG
* * * * * * *
15496860 GTCCCCCTTGCGTACTGCCGATCCTACTATCAGAAACCTCGGTTTGGTCTGATCTTAGACTGGGA
1 GTCCCCCTTGAGTGCTGTCGATCCTACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
*
15496925 ATGTACTCCATATGC
66 ATGAACTCCATATGC
15496940 TTAGACTGGG
Statistics
Matches: 339, Mismatches: 50, Indels: 18
0.83 0.12 0.04
Matches are distributed among these distances:
317 71 0.21
318 261 0.77
319 7 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (317 bp):
GTCCCCCTTGAGTGCTGTCGATCCTACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
ATGAACTCCATATGCATAAGTCAACCAACGAAACGAGAGTACAGGCACTGAGCCGATCGAAGAGG
CATAATACGCAAGCTGAGGATCGACCCGATCCCCCTCTGCATGCTGTCGGTCCCACTGCCAAAAC
CCTCAGTTCGACTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG
GCATGCGGGCGCTCAGCCAACCGGAAAGGTAAAATGCGCAAGCTGAGGATCGACCTG
Found at i:15496949 original size:26 final size:26
Alignment explanation
Indices: 15496913--15496965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15496903 TTGGTCTGAT
*
15496913 CTTAGACTGGGAATGTACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15496939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15496965 C
1 C
15496966 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15497512 original size:26 final size:26
Alignment explanation
Indices: 15497476--15497528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15497466 CCGGTCCGAT
* *
15497476 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15497502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15497528 C
1 C
15497529 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15498648 original size:26 final size:26
Alignment explanation
Indices: 15498607--15498659 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15498597 CCAGTCCGAT
15498607 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
15498633 CTTAGACTAGGG-ATGAACTTTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
15498659 C
1 C
15498660 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15499528 original size:26 final size:26
Alignment explanation
Indices: 15499477--15499529 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15499467 CTGATCCAAT
**
15499477 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
15499503 CTTAGATTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15499529 C
1 C
15499530 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:15500235 original size:26 final size:26
Alignment explanation
Indices: 15500185--15500237 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15500175 GGCTCAAAAT
**
15500185 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15500211 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15500237 C
1 C
15500238 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15501139 original size:159 final size:157
Alignment explanation
Indices: 15500845--15501706 Score: 652
Period size: 159 Copynumber: 5.4 Consensus size: 157
15500835 CTGCCGATCC
* * *
15500845 TGCTATCGATCCTGCTACCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCCGT
1 TGCTGTCGATCCTGCTACCACAACCCTCGGTCTAG-CTCGAGCTTAGACATGGAATGAACTCCGT
* ** * * * * *
15500909 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGC-GCAGTCGACCAGAGAGGTAGAATGTGC
65 ATGCCTAAGCCAACCCATGAAATGAGCGTATGGGCGCTG-AGCCGATCGGAGAGGTAGAATGCGC
15500973 AAGCTGGGGATCGACCTGGTCCCCCCATGCG
129 AAGCTGGGGATCG-CCTGGTCCCCCC-TGCG
* * * * *
15501004 TGCTGTCGATCCTGCTACCACAACCTTCGGTCTAGTTCGATCTTAGA-TTGGGAATGAACTCCGC
1 TGCTGTCGATCCTGCTACCACAACCCTCGGTCTAGCTCGAGCTTAGACAT-GGAATGAACTCCGT
* * * * * *
15501068 ATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGCCGATCAGG-GAGGCATAATGCGC
65 ATGCCTAAGCCAACCCATGAAATGAGCGTATGGGCGCTGAGCCGATC-GGAGAGGTAGAATGCGC
*
15501132 AAGCTGGGGATTAGCCCT-GTCCCCCTCTGCG
129 AAGCTGGGGA-TCG-CCTGGTCCCCC-CTGCG
* * * * * * * *
15501163 TGCTG-CCAGT-CTCGCTGCCACAACCTTTGATC-ATGCTAGGGCTTAGAGATGGAATGAACTCC
1 TGCTGTCGA-TCCT-GCTACCACAACCCTCGGTCTA-GCTCGAGCTTAGACATGGAATGAACTCC
* * * * * * * *
15501225 CTATACCTAAGCCAACCCACGAAATGGGCATTTGAGCGCTCAGCCGATCGGAGAGGTAGAATGCG
63 GTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGCGCTGAGCCGATCGGAGAGGTAGAATGCG
** * ** *
15501290 CAAGCCAGGGATCGACTCCTTCCCCCCCCGCG
128 CAAGCTGGGGATCGCCT-GGT-CCCCCCTGCG
* ** * ** * *
15501322 TGCTGTTGATCCTGCTACCGTAACCCTCAGTCCGGTTCGATCTTAGAC-TGTGAATGAACTCCGT
1 TGCTGTCGATCCTGCTACCACAACCCTCGGTCTAGCTCGAGCTTAGACATG-GAATGAACTCCGT
* * ** * *
15501386 ATGCCTAAGTCAACCCATGAAATGAGTGTATGGGCATTGAGCCGATCGGAGAGGTATAATTCGCA
65 ATGCCTAAGCCAACCCATGAAATGAGCGTATGGGCGCTGAGCCGATCGGAGAGGTAGAATGCGCA
* * *
15501451 AGCTGGGGACTTGCCCGGTCCCACTCTGCG
130 AGCTGGGGA-TCGCCTGGTCCC-CCCTGCG
* * ** * * ** * * * *
15501481 TGCTGCCGGTCCCACTAGCACAACCCTCGATCCGGCTGGGGCTTAGACATAGAATGAACTCCTTA
1 TGCTGTCGATCCTGCTACCACAACCCTCGGTCTAGCTCGAGCTTAGACATGGAATGAACTCCGTA
* * * * * *
15501546 TGCCTAAGCCAACCCATGAAACGAGCGTGCT-GGCGCTTAGCCTATCGGAGAGGCAGAATGCACA
66 TGCCTAAGCCAACCCATGAAATGAGCGT-ATGGGCGCTGAGCCGATCGGAGAGGTAGAATGCGCA
* *
15501610 AGCCGGGGATCGGCTCGGTCCCCCCTGCG
130 AGCTGGGGATCGCCT-GGTCCCCCCTGCG
* * * * *
15501639 TGCTGTCGATCC-GACTATCGCAACCCTCGGT-TCGATCTGATCTTAGAC-TAGGAATGAACTCC
1 TGCTGTCGATCCTG-CTACCACAACCCTCGGTCTAGCTC-GAGCTTAGACAT-GGAATGAACTCC
15501701 GTATGC
63 GTATGC
15501707 TTAGACTGGG
Statistics
Matches: 540, Mismatches: 137, Indels: 53
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.01
158 72 0.13
159 440 0.81
160 23 0.04
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
TGCTGTCGATCCTGCTACCACAACCCTCGGTCTAGCTCGAGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCATGAAATGAGCGTATGGGCGCTGAGCCGATCGGAGAGGTAGAATGCGCAA
GCTGGGGATCGCCTGGTCCCCCCTGCG
Found at i:15501453 original size:318 final size:315
Alignment explanation
Indices: 15500863--15501706 Score: 973
Period size: 318 Copynumber: 2.7 Consensus size: 315
15500853 ATCCTGCTAC
* * * * *
15500863 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGATCAGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * * * * *
15500928 AAATGAGCGTGCGGGTGCGCAGTCGACCAGAGAGGTAGAATGTGCAAGCTGGGGATCGA--CCTG
66 AAATGAGCGT-CTGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCCT-
* * * * *
15500991 GTCCCCCCATGCGTGCTGTCGATCCTGCTACCACAACCTTCGGTCTAGTTCGATCTTAGATTGGG
129 -TCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTC-CGTTCGATCTTAGACT-GG
*
15501056 AATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGCCGATCAGGGAG
191 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGCCGATCAGGGAG
* * * *
15501121 GCATAATGCGCAAGCTGGGGA-TTAGCCCTGTCCCCCTCTGCGTGCTGCCAGTCTCGCT-G
256 GCATAATGCGCAAGCTGGGGACTT-GCCCGGTCCCACTCTGCGTGCTGCCAGTCCCACTAG
* * * * *
15501180 CCACAACCTTTGATCATGCTAGGGCTTAGAGATGGAATGAACTCCCTATACCTAAGCCAACCCAC
1 -CACAACCCTCGATCAGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
15501245 GAAATGGGCATTTGAGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACTCCT
65 GAAATGAGCGTCTG-GCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCCT
* * * *
15501310 TCCCCCCCCGCGTGCTGTTGATCCTGCTACCGTAACCCTCAGTCCGGTTCGATCTTAGACTGTGA
129 TCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCC-GTTCGATCTTAGACTG-GA
* ** *
15501375 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTATGGGCATTGAGCCGATC-GGAGAG
192 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGCCGATCAGG-GAG
* * *
15501439 GTATAATTCGCAAGCTGGGGACTTGCCCGGTCCCACTCTGCGTGCTGCCGGTCCCACTAG
256 GCATAATGCGCAAGCTGGGGACTTGCCCGGTCCCACTCTGCGTGCTGCCAGTCCCACTAG
* * * * *
15501499 CACAACCCTCGATCCGGCTGGGGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCATG
1 CACAACCCTCGATCAGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * * * **
15501564 AAACGAGCGTGCTGGCGCTTAGCCTATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGT
66 AAATGAGCGT-CTGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCCTT
* * *
15501629 -CCCCCCTGCGTGCTGTCGATCC-GACTATCGCAACCCTCGGTTCGATCTGATCTTAGACTAGGA
130 CCCCCCCTGCGTGCTGTCGATCCTG-CTACCGCAACCCTCGGTCCGTTC-GATCTTAGACT-GGA
15501692 ATGAACTCCGTATGC
192 ATGAACTCCGTATGC
15501707 TTAGACTGGG
Statistics
Matches: 442, Mismatches: 72, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
316 4 0.01
317 67 0.15
318 363 0.82
319 5 0.01
320 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (315 bp):
CACAACCCTCGATCAGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAATGAGCGTCTGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCCTTC
CCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGTTCGATCTTAGACTGGAATGA
ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTGAGCCGATCAGGGAGGCATA
ATGCGCAAGCTGGGGACTTGCCCGGTCCCACTCTGCGTGCTGCCAGTCCCACTAG
Found at i:15501721 original size:26 final size:26
Alignment explanation
Indices: 15501680--15501732 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15501670 TCGATCTGAT
15501680 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
15501706 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15501732 C
1 C
15501733 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15502447 original size:26 final size:26
Alignment explanation
Indices: 15502410--15502460 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15502400 GGCTCAAAAT
* *
15502410 CTTAGACTTGGAATGAACTCCGTATA
1 CTTAGACATGGAATAAACTCCGTATA
15502436 CTTAGACATGGAATAAACTCCGTAT
1 CTTAGACATGGAATAAACTCCGTAT
15502461 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATA
Found at i:15502943 original size:26 final size:26
Alignment explanation
Indices: 15502902--15502954 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15502892 CTGGTCTGAC
15502902 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
15502928 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15502954 C
1 C
15502955 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15503276 original size:171 final size:171
Alignment explanation
Indices: 15502927--15503296 Score: 410
Period size: 171 Copynumber: 2.2 Consensus size: 171
15502917 AACTCCGTAT
* * * *
15502927 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGCACGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACAGGCGCTCAA
* *
15502992 CCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGGTCCCCTTCTGCGTGCTACCAATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCTTCTGCGTGCTACCAATC
* * *
15503057 CTGCTACCGGTCCTACTACCACAACCATCGGTCCGACTGGG
131 CTGCTACCGGTCCTACTACCACAACCATCGATCCGACTCGA
* * * * **
15503098 GCTTAGACAT-GGAATGACCTCCGTATGCCTAAGCCAATCTAGGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACAGGCGCTCA
* * * * * *
15503162 ACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGAT-TGACCCGGTCCCC-TCTTGTGTGCTACCG
65 ACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGGTCCCCTTC-TGCGTGCTACCA
* * * *
15503225 ATCCTGCTACCGGT-TTGGCTACCGCAATCC-TCGATCCG-GTCCGA
128 ATCCTGCTACCGGTCCT-ACTACCACAA-CCATCGATCCGACT-CGA
*
15503269 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
15503297 TTAAACATGG
Statistics
Matches: 165, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
170 6 0.04
171 156 0.95
172 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACAGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCTTCTGCGTGCTACCAATC
CTGCTACCGGTCCTACTACCACAACCATCGATCCGACTCGA
Found at i:15504043 original size:158 final size:157
Alignment explanation
Indices: 15503305--15504597 Score: 801
Period size: 158 Copynumber: 8.1 Consensus size: 157
15503295 GCTTAAACAT
* * **
15503305 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-AGCTCAGCCGACTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-CTCAGCCGACCAGA
* * * * * * * * * * * *
15503369 GAGACAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCTTGTGTGTTGTCGATCCTACTACCGC
65 GAGGCATAATGTGCAAGTCGAGGATCGGCCCGGTCCCTC-TGCGTGCTATCGATCCTGCTGCCGC
* * *
15503434 AACCCTCGATCTGATCTGATCTTAGAAT-
129 AACCCTCGGTCCGATCTGATCTTAGACTA
* * ** * * * * *
15503462 GAGAATGAACTCCGCATGACTAAATCAACCCACGAAATGAGCGTGCGGG-AGGTGAGCCGGCCGG
1 G-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-CTCAGCCGACCAG
* * * * * * * * * *
15503526 AGAGACATAATGCGCAAGCCGGGGATCGGCTCGTTCCCTCTACGTGCTGTCGAT-CTCACTGCCA
64 AGAGGCATAATGTGCAAGTCGAGGATCGGCCCGGTCCCTCTGCGTGCTATCGATCCT-GCTGCCG
* * * **
15503590 CAACCCTCGATCTGGT-TGGGGCTTAGAC-A
128 CAACCCTCGGTCCGATCT-GATCTTAGACTA
* * * * * *
15503619 TGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGA
* ** * * ** * *
15503684 GAGGCAGAATGCACAAG-CTAGGGATCTGCCCAATTCCCCCTACGTGCTATCGATACTGCTGCTG
65 GAGGCATAATGTGCAAGTCGA-GGATCGGCCC-GGTCCCTCTGCGTGCTATCGAT-C--CTGCT-
* *
15503748 GTCTTGCTGCCACAACCCTCGGTCCGGT-TCAATCTTAGAC-A
124 G-C---C-G---CAACCCTCGGTCCGATCT-GATCTTAGACTA
* * * *
15503789 TGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGG-GCTCAGCTGACCAG
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GGCACTCAGCCGACCAG
* * * * * * * * * * **
15503853 AGAGGTAGAATGCGTAAG-CTAAGGAACAGCCCGATCCCTCATGCGTGCTGTTGATCCTGCTATC
64 AGAGGCATAATGTGCAAGTC-GAGGATCGGCCCGGTCCCTC-TGCGTGCTATCGATCCTGCTGCC
*
15503917 GCAACCCTCGGTCCGATCTGATCTTAGGCTA
127 GCAACCCTCGGTCCGATCTGATCTTAGACTA
* * * * *
15503948 GGAATGAACTCCGTATGCCTAAGTCATCCC-CTGAAATGAGCGTGCGGGCACTGACCCGACC-GA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAACGAGCGTGCGGGCACTCAGCCGACCAG-
* * * * * * * * *
15504011 AAAGGCATAATGTGCAAGTCGAGGTTTGGCCCGATCCTCTTCTGCGTGTTGTCGGTCCCGCTACC
64 AGAGGCATAATGTGCAAGTCGAGGATCGGCCCGGTCC-C-TCTGCGTGCTATCGATCCTGCTGCC
* * **
15504076 ACAACCCTCAGTCCGA-CTAGGGCTTAGAC-A
127 GCAACCCTCGGTCCGATCT-GATCTTAGACTA
* * * * * ** *
15504106 TGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGCATGCGGGCGGTCAGTCGACCAGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGA
* * * ** * * * *
15504171 GAGGCAGAATGAGCAAGTCGGGGATCCACCCGGTCCCTCCTGTGTGCTACCGATCTTACTGCCGC
65 GAGGCATAATGTGCAAGTCGAGGATCGGCCCGGTCCCT-CTGCGTGCTATCGATCCTGCTGCCGC
* *
15504236 AACCCTCGATCCGATCTGATCTTAGACTG
129 AACCCTCGGTCCGATCTGATCTTAGACTA
* * * * * * *
15504265 GGAATGAACTTCGTATGCCTAAGTCAATCCATGAAACGAGCGTGTGGGCACTGAGCC-AGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGA-CCAGA
* * * * *
15504329 GAGGCATAATGCGCAAGCCGGGGATTGACCCGGTCCCCTTCTGCGTGCTATCGATCCCT-CTGCC
65 GAGGCATAATGTGCAAGTCGAGGATCGGCCCGGT-CCC-TCTGCGTGCTATCGAT-CCTGCTGCC
** **
15504393 ATAACCCTCGGTCCGA-CTGGGGCTTAGAC-A
127 GCAACCCTCGGTCCGATCT-GATCTTAGACTA
* * * * *
15504423 TGGAATGAACACAC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAACCGGCCAG
1 -GGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAG
* *
15504487 AGAGGCAAAATGTGCAAGTCGAGGATCGGCCCGGTCCCCTCTGCGTGCTATCGATCCTGCTGTCG
64 AGAGGCATAATGTGCAAGTCGAGGATCGGCCCGGT-CCCTCTGCGTGCTATCGATCCTGCTGCCG
* *
15504552 CAACCCTCGGTCTGGTCTGATCTTAGACT-
128 CAACCCTCGGTCCGATCTGATCTTAGACTA
*
15504581 GAGAATCAACTCCGTAT
1 G-GAATGAACTCCGTAT
15504598 ACTTAGACTG
Statistics
Matches: 887, Mismatches: 197, Indels: 103
0.75 0.17 0.09
Matches are distributed among these distances:
156 4 0.00
157 121 0.14
158 374 0.42
159 246 0.28
160 8 0.01
161 3 0.00
162 4 0.00
163 1 0.00
166 1 0.00
167 5 0.01
169 6 0.01
170 111 0.13
171 3 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAG
AGGCATAATGTGCAAGTCGAGGATCGGCCCGGTCCCTCTGCGTGCTATCGATCCTGCTGCCGCAA
CCCTCGGTCCGATCTGATCTTAGACTA
Found at i:15504116 original size:159 final size:156
Alignment explanation
Indices: 15503781--15504543 Score: 583
Period size: 159 Copynumber: 4.8 Consensus size: 156
15503771 CCGGTTCAAT
* * *
15503781 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGG-GCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GGCACTCAG
* * * * * * * * * *
15503845 CTGACCAGAGAGGTAGAATGCGTAAG-CTAAGGAAC-AGCCCGATCCC-TCATGCGTGCTGTTGA
65 CCGACCAGAGAGGCATAATGTGCAAGTC-GAGGATCGA-CCCGGTCCCTTC-TGCGTGCTATCGA
** ** * **
15503907 TCCTGCTATCGCAACCCTCGGTCCGATCTGAT
127 TCCCACTGCCACAACCCTC-GTCCGA-CTGGG
* * * * *
15503939 CTTAGGC-TAGGAATGAACTCCGTATGCCTAAGTCATCCC-CTGAAATGAGCGTGCGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAACGAGCGTGCGGGCACTCA
* * * * * * * * *
15504002 CCCGACC-GAAAAGGCATAATGTGCAAGTCGAGGTTTGGCCCGATCCTCTTCTGCGTGTTGTCGG
64 GCCGACCAG-AGAGGCATAATGTGCAAGTCGAGGATCGACCCGGTCC-CTTCTGCGTGCTATCGA
* *
15504066 TCCCGCTACCACAACCCTCAGTCCGACTAGGG
127 TCCCACTGCCACAACCCTC-GTCCGACT-GGG
* * * * * ** *
15504098 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGCATGCGGGCGGTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * **
15504163 CGACCAGAGAGGCAGAATGAGCAAGTCGGGGATCCACCCGGTCCCTCCTGTGTGCTACCGATCTT
66 CGACCAGAGAGGCATAATGTGCAAGTCGAGGATCGACCCGGTCCCTTCTGCGTGCTATCGATCCC
* **
15504228 ACTGCCGCAACCCTCGATCCGATCTGAT
131 ACTGCCACAACCCTCG-TCCGA-CTGGG
* * * * * *
15504256 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAATCCATGAAACGAGCGTGTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
15504320 CC-AGCCGGAGAGGCATAATGCGCAAGCCGGGGATTGACCCGGTCCCCTTCTGCGTGCTATCGAT
65 CCGA-CCAGAGAGGCATAATGTGCAAGTCGAGGATCGACCCGGT-CCCTTCTGCGTGCTATCGAT
* *
15504384 CCCTCTGCCATAACCCTCGGTCCGACTGGGG
128 CCCACTGCCACAACCCTC-GTCCGACT-GGG
* * * *
15504415 CTTAGACATGGAATGAACACAC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAA
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
15504479 CCGGCCAGAGAGGCAAAATGTGCAAGTCGAGGATCGGCCCGGTCCCCTCTGCGTGCTATCGATCC
65 CCGACCAGAGAGGCATAATGTGCAAGTCGAGGATCGACCCGGTCCCTTCTGCGTGCTATCGATCC
15504544 TGCTGTCGCA
Statistics
Matches: 473, Mismatches: 110, Indels: 44
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.02
158 218 0.46
159 239 0.51
160 8 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACCAGAGAGGCATAATGTGCAAGTCGAGGATCGACCCGGTCCCTTCTGCGTGCTATCGATCCC
ACTGCCACAACCCTCGTCCGACTGGG
Found at i:15504144 original size:317 final size:314
Alignment explanation
Indices: 15503781--15504597 Score: 942
Period size: 317 Copynumber: 2.6 Consensus size: 314
15503771 CCGGTTCAAT
* *
15503781 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGGGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCG-GGGCTCAGC
* * * * * * *
15503846 TGACCAGAGAGGTAGAATGCGTAAG-CTAAGGAACAGCCCGATCCCTCATGCGTGCTGTTGATCC
65 TGACCAGAGAGGCAGAATGAGCAAGTC-GAGGAACAGCCCGGTCCCTC-TGCGTGCTATCGATCC
* *
15503910 TGCTATCGCAACCCTCGGTCCGATCTGATCTTAGGCTAGGAATGAACTCCGTATGCCTAAGTC-A
128 TGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
15503974 TCCCCTGAAATGAGCGTGCGGGCACTGACCC-GACCGAAAAGGCATAATGTGCAAGTCGAGGTTT
192 T-CCATGAAACGAGCGTGCGGGCACTGACCCAG-CCGAAAAGGCATAATGCGCAAGCCGAGGATT
* * * * *
15504038 GGCCCGATCCTCTTCTGCGTGTTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTAGGG
255 GACCCGATCCCCTTCTGCGTGCTATCGATCCCGCTACCACAACCCTCAGTCCGACTAGGG
* * * *
15504098 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGCATGCGGGCGGTCAG-
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-GCTCAGC
* * * *
15504162 TCGACCAGAGAGGCAGAATGAGCAAGTCGGGGATCCA-CCCGGTCCCTCCTGTGTGCTACCGATC
65 T-GACCAGAGAGGCAGAATGAGCAAGTCGAGGA-ACAGCCCGGTCCCT-CTGCGTGCTATCGATC
* * * * *
15504226 TTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
127 CTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15504291 ATCCATGAAACGAGCGTGTGGGCACTGAGCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATTG
191 ATCCATGAAACGAGCGTGCGGGCACTGACCCAGCCGAAAAGGCATAATGCGCAAGCCGAGGATTG
* * * * * *
15504356 ACCCGGTCCCCTTCTGCGTGCTATCGATCCCTCTGCCATAACCCTCGGTCCGACTGGGG
256 ACCCGATCCCCTTCTGCGTGCTATCGATCCCGCTACCACAACCCTCAGTCCGACTAGGG
* * * * *
15504415 CTTAGACATGGAATGAACACACTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGG-GGCTCAGC
* * * * * *
15504480 CGGCCAGAGAGGCAAAATGTGCAAGTCGAGGATCGGCCCGGTCCCCTCTGCGTGCTATCGATCCT
65 TGACCAGAGAGGCAGAATGAGCAAGTCGAGGAACAGCCCGGT-CCCTCTGCGTGCTATCGATCCT
* * *
15504545 GCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATCAACTCCGTAT
129 GCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTG-GAATGAACTCCGTAT
15504598 ACTTAGACTG
Statistics
Matches: 416, Mismatches: 72, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
316 5 0.01
317 400 0.96
318 11 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (314 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGCTCAGCT
GACCAGAGAGGCAGAATGAGCAAGTCGAGGAACAGCCCGGTCCCTCTGCGTGCTATCGATCCTGC
TGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAATCCA
TGAAACGAGCGTGCGGGCACTGACCCAGCCGAAAAGGCATAATGCGCAAGCCGAGGATTGACCCG
ATCCCCTTCTGCGTGCTATCGATCCCGCTACCACAACCCTCAGTCCGACTAGGG
Found at i:15505109 original size:159 final size:157
Alignment explanation
Indices: 15504711--15505134 Score: 396
Period size: 159 Copynumber: 2.7 Consensus size: 157
15504701 TCTGTATGCC
* * * *
15504711 TAGACATGGATTGAACTCCGC-ATGCCTAAGCC-ACCCATGAAACGAGCGTGCGGGTGCTCAGCT
1 TAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCT
* ** * * * *
15504774 GGCTAGAGAGGTAAAATACGTAAG-TCGGGGATCGGC-CCAGTCCCCCCTGTGTGCTATCGATCC
65 GGC-GGAGAGACAAAATGCGTAAGCT-GGGGATCGGCTCGA-TCCCCCCTATGTACTATCGATCC
* * *
15504837 TACTACCGCAAGCCTCAGTCCGATCTGATCT
127 CACTACCACAACCCTCAGTCCGATCTGATCT
* ** * *
15504868 TAGAC-TGGGAATTAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCG-TTGAGC
1 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTT-AGC
* * * * *
15504931 TAGCCGA-AGACCCATAATGCGTAAGCTGGGGATCGGCTCGATCCCCCTCTATGTACTGTCGGTC
64 TGGCGGAGAGA--CAAAATGCGTAAGCTGGGGATCGGCTCGATCCCCC-CTATGTACTATCGATC
* * * *
15504995 CCGCTGCCACAACCCTCAGTCCGA-CTGGGTTT
126 CCACTACCACAACCCTCAGTCCGATCT-GATCT
*
15505027 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCTG
* * * *
15505092 GTCGGAGAGACAGAATGCGTAAGCTGGAGATCAGCTCGGTCCC
66 G-CGGAGAGACAAAATGCGTAAGCTGGGGATCGGCTCGATCCC
15505135 GTCTACGTGC
Statistics
Matches: 214, Mismatches: 39, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
156 3 0.01
157 26 0.12
158 56 0.26
159 120 0.56
160 6 0.03
161 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCTG
GCGGAGAGACAAAATGCGTAAGCTGGGGATCGGCTCGATCCCCCCTATGTACTATCGATCCCACT
ACCACAACCCTCAGTCCGATCTGATCT
Found at i:15505218 original size:26 final size:26
Alignment explanation
Indices: 15505182--15505234 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15505172 TCTGTCCAAT
15505182 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15505208 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15505234 C
1 C
15505235 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15506025 original size:158 final size:156
Alignment explanation
Indices: 15505574--15506025 Score: 464
Period size: 158 Copynumber: 2.9 Consensus size: 156
15505564 AACTCCGTAT
15505574 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * * * *
15505639 CCAATCGGAGAGGCAGAATGCGCAAGCCGAG-TCAGCTTGGTCCCCCCATGCATGCTGTCAATCT
66 CCGATCGGAGAGGCAGAATGC-CAAGCCGGGATCAGCCTGGTCCCCTC-TGCGTGCTGTCAATCC
* ** *
15505703 TGCTGCCACAACCCTTGGTTTGGTCTGA
129 TGCTGCCACAACCCTCGGTTCCGACTGA
* * * * * * *
15505731 TCTTAGAC-TGGGAATGATCTCGGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
* * * * * *
15505795 GCCGATCGGAGGGGCATAATGTGCAA-CCGAGGATCAGCCTAGTCCTCCTCTGCGTGTTGTCGAT
65 GCCGATCGGAGAGGCAGAATG-CCAAGCCG-GGATCAGCCTGGTCC-CCTCTGCGTGCTGTCAAT
** *
15505859 CCCACTGCCACAACCCTCGG-TCCGACTGGG
127 CCTGCTGCCACAACCCTCGGTTCCGACT-GA
* * * *
15505889 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAACCACGAAATGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* ** * *
15505954 TCGATCGGAGAGGCAGAATGCCTAAGTTTGGGATC-GACCCGGTCCCCTCTGCGTGCTGCCAATC
66 CCGATCGGAGAGGCAGAATGCC-AAG-CCGGGATCAG-CCTGGTCCCCTCTGCGTGCTGTCAATC
15506018 CTGCTGCC
128 CTGCTGCC
15506026 GCAAACCTTG
Statistics
Matches: 235, Mismatches: 49, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.02
157 82 0.35
158 133 0.57
159 15 0.06
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
CCGATCGGAGAGGCAGAATGCCAAGCCGGGATCAGCCTGGTCCCCTCTGCGTGCTGTCAATCCTG
CTGCCACAACCCTCGGTTCCGACTGA
Found at i:15507284 original size:158 final size:158
Alignment explanation
Indices: 15506784--15507276 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 158
15506774 ACTCCACATG
* * * *
15506784 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * *
15506849 CTGTCGGAGAGGCATAATGCGCAAGTCAGGGATTGGCCTGATCCCCCCTACGTGCTGTCAATCCT
66 CAGCCGGAGAGGCATAATCCGCAAGCCGGGGATCGGCCTGATCCCCCCTACGTGCTGTCGATCCT
* * * *
15506914 GCTACTGTAACCCT-TGATCCGGTCTGAT
131 GCTGCTGCAACCCTCAG-TCCAGTCTGAT
* * * * *
15506942 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
15507006 CCGGCCAGAGAGGCATAA-CGCGCAAGCCGGGGATCGACCTGGTCCCCTCTGCGTGCTTTCGAT-
65 CCAGCCGGAGAGGCATAATC-CGCAAGCCGGGGATCGGCCTGATCCCCCCTACGTGCTGTCGATC
** * * **
15507069 CTCGCTGCCACAATCCTCAGTCTAG-CTGGGG
129 CT-GCTGCTGCAACCCTCAGTCCAGTCT-GAT
* * * * * *
15507100 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
15507165 CAACCGGAGAGGTAGAATCCGTAAGCCGGGGATCGGCCCGCTCCCCCCTACGTGCTGTCGATCCT
66 CAGCCGGAGAGGCATAATCCGCAAGCCGGGGATCGGCCTGATCCCCCCTACGTGCTGTCGATCCT
*
15507230 GCTGTTGCAACCCTCAGTCCAGTCTGAT
131 GCTGCTGCAACCCTCAGTCCAGTCTGAT
15507258 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
15507277 TTGTATGCTT
Statistics
Matches: 262, Mismatches: 63, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 249 0.95
159 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CAGCCGGAGAGGCATAATCCGCAAGCCGGGGATCGGCCTGATCCCCCCTACGTGCTGTCGATCCT
GCTGCTGCAACCCTCAGTCCAGTCTGAT
Found at i:15508333 original size:26 final size:26
Alignment explanation
Indices: 15508280--15508334 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
15508270 TCCCCCTGTG
*
15508280 TGCTTAGACTGGGAAAGAACTTCATA
1 TGCTTAGACTGGGAAAGAACTCCATA
* *
15508306 TGCTTAGACTAGGG-ATGAACTCCGTA
1 TGCTTAGACT-GGGAAAGAACTCCATA
15508332 TGC
1 TGC
15508335 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAAAGAACTCCATA
Found at i:15509124 original size:26 final size:26
Alignment explanation
Indices: 15509094--15509146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15509084 TCCGTCCAAT
*
15509094 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
15509120 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
15509146 C
1 C
15509147 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15510198 original size:26 final size:26
Alignment explanation
Indices: 15510148--15510200 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15510138 CCAGTCTGAT
**
15510148 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15510174 CTTAGACTGGGGATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15510200 C
1 C
15510201 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15510430 original size:343 final size:342
Alignment explanation
Indices: 15509803--15510445 Score: 853
Period size: 343 Copynumber: 1.9 Consensus size: 342
15509793 GTGGCTCAAA
*
15509803 ATCTTAGACTGGGAATGAACTTCGTATCCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAA
1 ATCTTAGACTGGGAATGAACTTCGTATCCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
* * * * * *
15509868 CCACGAAACTAGCGTGTGGGCGCTCAGTCAGCCGGAGAGGCATAATGTGCAAGTCAGGGATCGAC
66 CCACGAAAATAGCGTGCGGGCGCTCAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCGAC
* * * *
15509933 CCGGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCGAATGGGGCTTAGACA
131 CCGGTCCCCCTATGCGTGCTGCCGATCCCACTGCCACAACCCTCAGTCCGAATGGGGCTTAGACA
* * * * * *
15509998 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAGTCGGTCGGA
196 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGATCGGA
15510063 GAGGCATAATGAGCAAGCCGAGGATCGACCCGGTACCCCCTGTGTGCTGTCGATCCTACTGCCGG
261 GAGGCATAATGAGCAAGCCGAGGATCGACCCGGT-CCCCCTGTGTGCTGTCGATCCTACTGCCGG
15510128 AACCCTCAGTCCAGTCTG
325 AACCCTCAGTCCAGTCTG
* * * * *
15510146 ATCTTAGACTGGGAATGAACTTTGTATGCTTAGAC-TGGGGATGGACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTTCGTATCCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * *
15510210 CCCAC-AAAATGAGCGTGCGGGCGCTGAGCCAATCGGAGAGGCATAATGCGCAAGCCTA-GGATC
65 ACCACGAAAAT-AGCGTGCGGGCGCTCAGCCAACCGGAGAGGCATAATGCGCAAGCC-AGGGATC
* * * * * * ** *
15510273 GGCTCGGTCCTCTTATGCGTGCTGCCGATCTCACTGCCACAACCCTCAGTTCGGCTGGGGTTTAG
128 GACCCGGTCCCCCTATGCGTGCTGCCGATCCCACTGCCACAACCCTCAGTCCGAATGGGGCTTAG
* *
15510338 AC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCGAT
193 ACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGAT
* * * *
15510402 CGGAGAGGCATAATGGGCAAGTCGAGGATCGGCCTGGTCCCCCT
257 CGGAGAGGCATAATGAGCAAGCCGAGGATCGACCCGGTCCCCCT
15510446 CTGCGTGCTA
Statistics
Matches: 256, Mismatches: 40, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
342 13 0.05
343 242 0.95
344 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (342 bp):
ATCTTAGACTGGGAATGAACTTCGTATCCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
CCACGAAAATAGCGTGCGGGCGCTCAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCGAC
CCGGTCCCCCTATGCGTGCTGCCGATCCCACTGCCACAACCCTCAGTCCGAATGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGATCGGA
GAGGCATAATGAGCAAGCCGAGGATCGACCCGGTCCCCCTGTGTGCTGTCGATCCTACTGCCGGA
ACCCTCAGTCCAGTCTG
Found at i:15510601 original size:158 final size:158
Alignment explanation
Indices: 15510173--15510609 Score: 524
Period size: 159 Copynumber: 2.8 Consensus size: 158
15510163 AACTTTGTAT
* * * * *
15510173 GCTTAGACTGGGGATGGACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGAGAAT-GACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
15510238 CCAATCGGAGAGGCATAATGCGCAAGCCTA-GGATCGGCTCGGTCCTCTTATGCGTGCTGCCGAT
65 CCGATCGGAGAGGCATAATGCGCAAGCC-AGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
* *
15510302 CTCACTGCCACAACCCTCAGTTCGGCTGGG
129 CCCACTGCCACAACCCTCAATTCGGCTGGG
* * *
15510332 GTTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACTGAGAATG-ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15510397 CCGATCGGAGAGGCATAATGGGCAAGTC-GAGGATCGGCCTGGTCCCCCTCTGCGTGCTACCGGT
65 CCGATCGGAGAGGCATAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
15510461 CCCACTGCCACAACCCTCAA-TCTGGCTGGG
129 CCCACTGCCACAACCCTCAATTC-GGCTGGG
* * * *
15510491 GCTTAGACATG-GAATGACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAG
1 GCTTAGAC-TGAGAATGACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
15510555 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAATCCCCC-CTGCGTG
65 CCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTG
15510610 TTGTCGATCC
Statistics
Matches: 237, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
157 7 0.03
158 83 0.35
159 145 0.61
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACTGAGAATGACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCC
CACTGCCACAACCCTCAATTCGGCTGGG
Found at i:15510675 original size:158 final size:157
Alignment explanation
Indices: 15510174--15510675 Score: 523
Period size: 159 Copynumber: 3.2 Consensus size: 157
15510164 ACTTTGTATG
* * * * *
15510174 CTTAGACTGGGGATGGACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ***
15510239 CAATCGGAGAGGCATAATGCGCAAGCCTA-GGATCGGCTCGGTCCTCTTATGCGTGCTGCCGAT-
66 CGATCGGAGAGGCATAATGCGCAAGCC-AGGGATCGGCCCGGTCC-CCCCTGCGTGCTGCCGATC
*
15510302 CTCACTGCCACAACCCTCAGTTCGGCTGGGGT
129 CT-ACTGCCACAACCCTCA-TCCGGCT-GGGT
* * *
15510334 -TTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15510398 CGATCGGAGAGGCATAATGGGCAAGTC-GAGGATCGGCCTGGTCCCCCTCTGCGTGCTACCGGTC
66 CGATCGGAGAGGCATAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATC
* * *
15510462 CCACTGCCACAACCCTCAATCTGGCTGGGG
129 CTACTGCCACAACCCTC-ATCCGGCTGGGT
* * * *
15510492 CTTAGACAT-GGAATG-ACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * *
15510555 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAATCCCCCCTGCGTGTTGTCGATCC
65 CCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * *
15510620 TACTACCGCAACCCTCGATCCGGTCT-GAT
130 TACTGCCACAACCCTC-ATCCGG-CTGGGT
*
15510649 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15510676 TTAGATTAGG
Statistics
Matches: 281, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 45 0.16
158 95 0.34
159 137 0.49
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
ACTGCCACAACCCTCATCCGGCTGGGT
Found at i:15511412 original size:26 final size:26
Alignment explanation
Indices: 15511374--15511426 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15511364 GGCTCAAAAT
15511374 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15511400 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15511426 C
1 C
15511427 CTACGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15511859 original size:159 final size:158
Alignment explanation
Indices: 15511400--15511902 Score: 457
Period size: 159 Copynumber: 3.2 Consensus size: 158
15511390 ACTCCGTATG
* * * *
15511400 CTTAGACATGGAATGAACTTCGTATGCCTACGCCAACCCATGAAAC-GAGTGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGAG-CTGCGGGCGCTCAG
** * * ** *
15511464 TTGGCC-GAAAGGCATAATGCGCAAGCCGGGGATCGGCCTAATCCCCCCTTGTGTGCTATCGATC
65 CCGACCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCC-TATGTGCTATCGATC
*
15511528 CTGCTTCTGCAACCCTCGGTCCGGTCTGAT
129 CTGCTACTGCAACCCTCGGTCCGGTCTGAT
* * * ** *
15511558 CTTAGA-GTGGGAATGAACTCCATATGCATAAGTCAA-CCAACAAA-ATGAGCGTGCGGGCGCTG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACA-GAGC-TGCGGGCGCTC
* * * * * * *
15511620 AACCGACCGAAAAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCTCTATGTGCTGTTCG
63 AGCCGACCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTATGTGCT-ATCG
** * ** *
15511685 -TCCCACTGCCACAACCCTCGGTCTGG-CTG-T
126 ATCCTGCTACTGCAACCCTCGGTCCGGTCTGAT
* * *
15511715 GGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGGCATGCGGGCGCTC
1 --CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGAGC-TGCGGGCGCTC
* * * * *
15511780 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTACCGAT
63 AGCCGACCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTATGTGCTATCGAT
* * *
15511845 CCTGCTACTGCAACCCTCTGTCCGATCCGAT
128 CCTGCTACTGCAACCCTCGGTCCGGTCTGAT
*
15511876 CTTAGAC-TGCGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCATATGC
15511903 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 63, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
157 8 0.03
158 52 0.20
159 137 0.52
160 67 0.25
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGAGCTGCGGGCGCTCAGC
CGACCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTATGTGCTATCGATCCT
GCTACTGCAACCCTCGGTCCGGTCTGAT
Found at i:15511905 original size:26 final size:26
Alignment explanation
Indices: 15511876--15511928 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15511866 CCGATCCGAT
15511876 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
15511902 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
15511928 C
1 C
15511929 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:15512364 original size:157 final size:158
Alignment explanation
Indices: 15512096--15512458 Score: 417
Period size: 158 Copynumber: 2.3 Consensus size: 158
15512086 GCTTAGACAT
* * * **
15512096 GGAATGAACTCCGTATGCCTAAGCCATCCCACGAAATGAGCTTGCGGGCGCTCAGCCAACTGGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCAACCAGAG
* * * * *
15512161 AGGCAGATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTACGTGCTG-CAATCCTGCTGCCGCA
66 AGACAGATACGCAAGCCGGGGACCGGCCCGATCCCCCCCTACGTGCTGTCAATCCTGCTACCACA
*
15512225 ACCCTCGGTTC-AGTCCGATCTTAAACTA
131 ACCCCCGG-TCGAGTCCGATCTTAAACTA
* * * * *
15512253 GGAATGAACTCTGTATGCCCAAGCCAACCCACAAAATGAGCGTGCGGGCGTTCAGCCAGCCAGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCAACCAGAG
* * * ** * *
15512318 AGATAGAATACGCAAGTCGGGGACCGGCCCGAT-CCCCTCTGTGTGCTGTCGATCCTGCTATCAC
66 AGACAG-ATACGCAAGCCGGGGACCGGCCCGATCCCCCCCTACGTGCTGTCAATCCTGCTACCAC
* * * *
15512382 AACCCCCGGTCGAGTTCGATCTTAGATTG
130 AACCCCCGGTCGAGTCCGATCTTAAACTA
** *
15512411 GGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCATGCGGG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGG
15512459 TGTTGAGCTG
Statistics
Matches: 171, Mismatches: 32, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
157 74 0.43
158 97 0.57
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCAACCAGAG
AGACAGATACGCAAGCCGGGGACCGGCCCGATCCCCCCCTACGTGCTGTCAATCCTGCTACCACA
ACCCCCGGTCGAGTCCGATCTTAAACTA
Found at i:15512749 original size:26 final size:26
Alignment explanation
Indices: 15512720--15512772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15512710 TCGATCTGAT
*
15512720 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
15512746 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
15512772 C
1 C
15512773 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:15513836 original size:159 final size:159
Alignment explanation
Indices: 15513443--15513937 Score: 443
Period size: 158 Copynumber: 3.1 Consensus size: 159
15513433 GGCTCAAAAT
* * *
15513443 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCGGT
* * * * * *
15513508 CGGCCGGAGAGGTATAATGCACAAGCTGGGGATCGGCCCGATCCCCC-CTGTGTGCTATCGATCC
66 CGGCCGGAGAGGCATAATGCGCAAGTTGGGGATCGACCCGGTCCCCCTCTGTGTGCTATCGAGCC
** * *
15513572 TGCTACAGCAACCCTCGATCCAGTCTAAT
131 CACTACAGCAACCCTCGATCCAGGCTAAG
* * * * * * *
15513601 CTTAGACTGGGAATGAACTCTATATGCATAAGTCAACCAACAAAACGAACGTGTGGGCACT-GAG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCG-G
* * * * *
15513665 CCGGTCGAAGAGGCATAATGCGCAAGTTGGGGATCGACCCGGTCCCCCTCTATGTGCTGTCTG-G
65 TCGGCCGGAGAGGCATAATGCGCAAGTTGGGGATCGACCCGGTCCCCCTCTGTGTGCTATC-GAG
* * *
15513729 CCCACTACCA-CAACCCTCGGT-CTGGCTAGGG
129 CCCACTA-CAGCAACCCTCGATCCAGGCTA-AG
* * * *
15513760 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCGG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCGG
* * * * * * *
15513824 TCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCTACTCGGT-CCCCTCTGTGTGCTA-CAGAT
65 TCGGCCGGAGAGGCATAATGCGCAAGTTGGGGATCGACCCGGTCCCCCTCTGTGTGCTATC-GAG
** * * * *
15513887 CCTGCTACTGCAACCCTCTG-TTC-GGTCTGAT
129 CCCACTACAGCAACCCTC-GATCCAGG-CTAAG
15513918 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
15513938 TGTATGCTTA
Statistics
Matches: 266, Mismatches: 58, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 145 0.55
159 112 0.42
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCGGT
CGGCCGGAGAGGCATAATGCGCAAGTTGGGGATCGACCCGGTCCCCCTCTGTGTGCTATCGAGCC
CACTACAGCAACCCTCGATCCAGGCTAAG
Found at i:15513969 original size:26 final size:26
Alignment explanation
Indices: 15513918--15513970 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15513908 TCGGTCTGAT
**
15513918 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15513944 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15513970 C
1 C
15513971 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15514533 original size:158 final size:159
Alignment explanation
Indices: 15514261--15514564 Score: 353
Period size: 158 Copynumber: 1.9 Consensus size: 159
15514251 GTCCTGCTAT
* * ** **
15514261 CGCAACCCTCGATCCAGTCCGATCTTAAATTGGGAATGAACTTTGTATGCCCAAGCCAACCCATG
1 CGCAACCCTCGATCCAGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCCAAGCCAACCCAAA
* * * * *
15514326 AAATGAGCGTGCGAGCGCTCAACTGGCTGGAGAGGCAGAATGCGCAAGTCTGGGACCGGCAC-GG
66 AAATGAGCGTGCGAGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGC-CTGA
15514390 TCCCCC-CTGCGTGCTGTCTATCCTATTGC
130 TCCCCCTCTGCGTGCTGTCTATCCTATTGC
* * * * * *
15514419 CGCAACCCTCGGTGCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAA
1 CGCAACCCTCGATCCAGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCCAAGCCAACCCAAA
* * * * * * *
15514484 AAATGAGTGTGTGGGCACTGAGCCGGCCGGAGAGGCATAATGCAG-AAGTCGGGGATCGGCCTGA
66 AAATGAGCGTGCGAGCACTCAACCGGCCGGAGAGGCAGAATGC-GCAAGTCGGGGACCGGCCTGA
15514548 TCCCCCTCTGCGTGCTG
130 TCCCCCTCTGCGTGCTG
15514565 CCGGTCTCGC
Statistics
Matches: 119, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 107 0.90
159 11 0.09
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CGCAACCCTCGATCCAGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCCAAGCCAACCCAAA
AAATGAGCGTGCGAGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCTGAT
CCCCCTCTGCGTGCTGTCTATCCTATTGC
Found at i:15514809 original size:26 final size:26
Alignment explanation
Indices: 15514771--15514823 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15514761 CTGGTTCGAT
15514771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15514797 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15514823 C
1 C
15514824 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15515025 original size:123 final size:123
Alignment explanation
Indices: 15514806--15515043 Score: 298
Period size: 123 Copynumber: 1.9 Consensus size: 123
15514796 GCTTAGACAT
* ** *
15514806 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGATCGTGCGGGTGCTCAGCCGGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACGAGCGTGCGGGTGCTCAGCCGGTCGAAG
* ***
15514871 AGGCAGAATGCATAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTTGATCTTG
66 AGGCAGAATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTTGATCTTG
* * * * *
15514929 GGAATGAACTCCGTATGCCTAAGTCAAACCACAAAATGAGCGTGCGGGTGCTGAGTC-GTCTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACGAGCGTGCGGGTGCTCAGCCGGTC-GAA
* ** **
15514993 GAGGCATAATGTGCAAGCCAAGGATTGGCCCGATCCCCCTCTGCGTGCTGT
65 GAGGCAGAATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGT
15515044 CGGTCCCACT
Statistics
Matches: 96, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
122 3 0.03
123 93 0.97
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (123 bp):
GGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACGAGCGTGCGGGTGCTCAGCCGGTCGAAG
AGGCAGAATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTTGATCTTG
Found at i:15516049 original size:26 final size:26
Alignment explanation
Indices: 15516011--15516063 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15516001 GGCTCAAACT
15516011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15516037 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15516063 C
1 C
15516064 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15516617 original size:194 final size:195
Alignment explanation
Indices: 15516323--15516703 Score: 511
Period size: 194 Copynumber: 2.0 Consensus size: 195
15516313 TGTTGCCTAT
* * *
15516323 CCTGCTGCCGCAACCCTCAGTCCAGTTAGATCTTAGACTGGAAATGAACTCCGTATGCTTAAACT
1 CCTGCTACCGCAACCCTCAGTCCAGATAGATCTTAGACTGGAAATGAACTCCATATGCTTAAACT
* * *
15516388 AGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAACCGACCGGA
66 AGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAACCGACCGGA
* * * * * *
15516453 GAGGTAGAATGCACAAGTC-GGGGCTCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTCTGG
131 GAGGTAGAATGCACAAGCCAAGGAC-CGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTCTGG
15516517 C
195 C
*
15516518 CCTGCTACCGCAACCCTCAGTCC-GATACGATCTTAGACT-GAAATGAACTCCATATGCTTAGAC
1 CCTGCTACCGCAACCCTCAGTCCAGATA-GATCTTAGACTGGAAATGAACTCCATATGCTTAAAC
* * * ** *
15516581 -ATGGAATGAACTCTGTATGCCTCAA-CCAAGCCACGAAACGAGCATGCAGGCGCTCAGTCGGCC
65 TA-GGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAACAAGCATGCAGGCGCTCAACCGACC
*
15516644 GGAGAGGTAGAATGCACAAGCCAAGGACCGACCCGATCGCCCCTGCGTGCTATCGATCCT
128 GGAGAGGTAGAATGCACAAGCCAAGGACCGACCCGATCCCCCCTGCGTGCTATCGATCCT
15516704 ACTGTCACAA
Statistics
Matches: 162, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
193 1 0.01
194 123 0.76
195 38 0.23
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.19
Consensus pattern (195 bp):
CCTGCTACCGCAACCCTCAGTCCAGATAGATCTTAGACTGGAAATGAACTCCATATGCTTAAACT
AGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAACCGACCGGA
GAGGTAGAATGCACAAGCCAAGGACCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTCTGGC
Found at i:15517061 original size:41 final size:41
Alignment explanation
Indices: 15517016--15517097 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
15517006 CATGCTGCCG
* *
15517016 ATCCTGCTGTCACAACCCTCGATCTGGTCTGATCTTAGACT
1 ATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACT
** * *
15517057 ATCCTGCTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACT
1 ATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACT
15517098 GGGAATGAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.17, C:0.32, G:0.20, T:0.32
Consensus pattern (41 bp):
ATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACT
Found at i:15517126 original size:26 final size:26
Alignment explanation
Indices: 15517090--15517142 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15517080 CCGGTCTGAT
15517090 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15517116 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15517142 C
1 C
15517143 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15517499 original size:26 final size:26
Alignment explanation
Indices: 15517470--15517522 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15517460 CCGATCCGAT
15517470 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15517496 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15517522 C
1 C
15517523 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15517975 original size:158 final size:156
Alignment explanation
Indices: 15517496--15517989 Score: 501
Period size: 158 Copynumber: 3.1 Consensus size: 156
15517486 ACTCCGTATG
* * *
15517496 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGGGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * *
15517560 CCGATCGGAGAGGTAGAATGCACAAGTCGGGGACCGGCCCAGTCCCTCCCTGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCA-TCCC-CCCTGCGTGCTG-CGATC
* * ** *
15517625 CGGTTATCGTAACCCTCAGTCCGATCTGAT
127 CCGCTGCCGTAACCCTCAGTCCGATCCGAT
* * * *
15517655 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * * ** * *
15517720 CGACCGGAGAGGCATAATGCGCAAACCGGGGATCGACCCATCACCTTCTACGTGCTGCCTATCCC
66 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCATC-CCCCCTGCGTGCTG-CGATCCC
** ** **
15517785 GCTGCCACAACCCTC-GATCC-AGTTGGGG
129 GCTGCCGTAACCCTCAG-TCCGA-TCCGAT
* * * * *
15517813 CTTAGA-TAGGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGAACGTATGGGTGCTCAA
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * *
15517877 CCGGCCGAAGAGGCAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCAGATCC
65 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCC-ATCCCCCCTGCGTGCTGC-GATCC
**
15517942 TACTGCCGTAACCCTCAGTCCGATCCGAT
128 CGCTGCCGTAACCCTCAGTCCGATCCGAT
15517971 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
15517990 TCATTTGCTT
Statistics
Matches: 267, Mismatches: 58, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 167 0.63
159 96 0.36
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCATCCCCCCTGCGTGCTGCGATCCCGC
TGCCGTAACCCTCAGTCCGATCCGAT
Found at i:15519626 original size:159 final size:157
Alignment explanation
Indices: 15519278--15519778 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 157
15519268 AACTCCGTAT
* ** * * *
15519278 GCTTAGACATGGAATGAACTCTGTATGATTAAGCCAACCCATGAAACAAGCATATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * * * * *
15519343 TCGCCCGAAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCATGCGTGCTGTCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAATCCGGGGATC-GCCCGGTCCCCCTTACGTGCTGTCGATCC
* * * *
15519408 TACTGTCGCAACCCTGGGTCCAATCCGA
130 TGCTGCCACAACCCTCGGTCCAATCCGA
* * * * * *
15519436 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGTGGGCGTTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
* *
15519500 GTCGACCGGAGAGGCATAATGCGCAATCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGT
65 GTCGACCGGAGAGGCAGAATGCGCAATCCGGGGATC-GCCCGGTCCCCCT-TACGTGCTGTCGAT
* * * * *
15519565 CCCGTTGCCACAACCCTCGGTCC-AGCTGGG
128 CCTGCTGCCACAACCCTCGGTCCAATC-CGA
* * **
15519595 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* *
15519660 CCGACCGGAGAGGCAGAATGCGCAAGT-TGGGGATCGACCCGGTCCCCCTTACGTG-TCGTCGAT
66 TCGACCGGAGAGGCAGAATGCGCAA-TCCGGGGATCG-CCCGGTCCCCCTTACGTGCT-GTCGAT
* ** *
15519723 CCTGCTACCACAACCCTCGGTCCGGTCTGA
128 CCTGCTGCCACAACCCTCGGTCCAATCCGA
* *
15519753 TCTTAGA-GTGGGAATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
15519779 ACTTAGACTG
Statistics
Matches: 279, Mismatches: 55, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 148 0.53
159 126 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGCAATCCGGGGATCGCCCGGTCCCCCTTACGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCAATCCGA
Found at i:15520511 original size:26 final size:26
Alignment explanation
Indices: 15520473--15520525 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15520463 GGCTCAAAAT
15520473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15520499 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15520525 C
1 C
15520526 CTAAGCCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15520828 original size:159 final size:156
Alignment explanation
Indices: 15520498--15521068 Score: 523
Period size: 159 Copynumber: 3.6 Consensus size: 156
15520488 AACTCCGTAT
* * * *
15520498 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCTACGAAATGAGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
* **
15520563 CCGACCGGAGAGGCAGAATGCATAAGCCGGGGAT--C-GG-CCCTCC-CTACGTGTTGACGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGCTGGTCCC-CCTCTACGTGTTGACGATCC
* *
15520623 TGCTGCCACAACCCTTGGTCCGGTCTGAT-
130 -GCTGCCACAACCCTCGGTCC-GACTG-TG
** * * * * * * *
15520652 -CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCA
* * * * *
15520715 GCTGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGACTTGGTCCCCCTCTATGTGTTGTCGGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCG-C-TGGTCCCCCTCTACGTGTTGACGAT
15520780 CTCGCTGCCACAACCCTCGGTCCGACTGTG
128 C-CGCTGCCACAACCCTCGGTCCGACTGTG
* * * * *
15520810 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTATGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
** * * * *
15520875 CCGGTCGAAGAGGCAGAATGCGGAAGTCGGGGATCGGCCTGGTCCCCCT-TACGTGCTGCCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATC-G-CTGGTCCCCCTCTACGTGTTGACGAT-
* * * * *
15520939 CCGCTACTATAACCCTCGATCC-AGCTGGG
128 CCGCTGCCACAACCCTCGGTCCGA-CTGTG
* * * * * *
15520968 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
* * * *
15521033 TCGACCGGAGAGGTAGAATACGCAAGCCGGGGATCG
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCG
15521069 GCCCGGTCCC
Statistics
Matches: 336, Mismatches: 66, Indels: 27
0.78 0.15 0.06
Matches are distributed among these distances:
152 1 0.00
153 80 0.24
156 1 0.00
157 3 0.01
158 122 0.36
159 125 0.37
160 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGCTGGTCCCCCTCTACGTGTTGACGATCCG
CTGCCACAACCCTCGGTCCGACTGTG
Found at i:15521132 original size:158 final size:158
Alignment explanation
Indices: 15520499--15521153 Score: 548
Period size: 158 Copynumber: 4.2 Consensus size: 158
15520489 ACTCCGTATG
* * * *
15520499 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCTACGAAATGAGCATGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGT
* ** *
15520564 CGACCGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCC--T---CCCTACGTGTTGA-CGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCT-ACCGATCC
* *
15520623 TGCTGCCACAACCCTTGGTCCGGTCTGAT
130 TGCTGCCACAACCCTCGGTCCGATCTGAT
* * * * * * * *
15520652 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
* * ** * * ** *
15520716 -CTGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGACTTGGTCCCCCTCTATGTGTTGTCGGT
65 TC-GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTACCGAT
15520780 -CTCGCTGCCACAACCCTCGGTCCGA-CTG-T
128 CCT-GCTGCCACAACCCTCGGTCCGATCTGAT
* * * * *
15520809 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTATGCGGGCGCTCA
1 --CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCA
** * * * * *
15520874 -TCCGGTCGAAGAGGCAGAATGCGGAAGTCGGGGATCGGCCTGGTCCCCCTTACGTGCTGCCGAT
64 GT-CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGAT
* * * * * * *
15520938 CCCGCTACTATAACCCTCGATCC-AGCTGGGGT
128 CCTGCTGCCACAACCCTCGGTCCGATCT--GAT
* * * * * *
15520970 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGAGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGT
* * * *
15521034 CGACCGGAGAGGTAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCT
* **** *
15521099 ACTGCTGTTACCCTCGGTCCGATCCGAT
131 GCTGCCACAACCCTCGGTCCGATCTGAT
15521127 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
15521154 TTAGATTGGG
Statistics
Matches: 399, Mismatches: 79, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
152 2 0.01
153 82 0.21
155 1 0.00
157 5 0.01
158 181 0.45
159 124 0.31
160 3 0.01
161 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGT
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCT
GCTGCCACAACCCTCGGTCCGATCTGAT
Found at i:15521517 original size:170 final size:174
Alignment explanation
Indices: 15521152--15521524 Score: 393
Period size: 170 Copynumber: 2.2 Consensus size: 174
15521142 AACTCCGTAT
* ** * * *
15521152 GCTTAGATTGGGGATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTACTGGA
1 GCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGG-ACTGCA
* * * * *
15521217 AAGGTCGGCTGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGCC
65 AAGCTCGGCTGGAGAGACAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCC
*
15521282 GATCCCGCTACTGGTCTTGCTGCCACAACCCTCGGTCCACCTAGG
130 GATCCCGCTACTGGTCTTGCTGCCACAACCCTCGGTCCACCTAGA
* * *
15521327 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGG-C-GCT
1 GCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGACTGCA
* * *
15521389 CAGCT-GG-TCGGAGAGACAGAATGCGCAAGCTGGGGATC-GTCTCGATCCCCC-CTGCATGCTG
65 AAGCTCGGCT-GGAGAGACAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCTCTGCATGCTG
* * * ** * **
15521450 TCGATCCTGCTGCTGGTCTTGCTGCCGTAACCCTTGGTCCGGTCT-GA
128 CCGATCCCGCTACTGGTCTTGCTGCCACAACCCTCGGTCC-ACCTAGA
* *
15521497 TCTTAGATTGGGAATGAACTCCATATGC
1 GCTTAGATTGGGAATGAACTCCGTATGC
15521525 TTAGACATGG
Statistics
Matches: 164, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
169 1 0.01
170 70 0.43
171 38 0.23
172 4 0.02
173 1 0.01
175 49 0.30
176 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (174 bp):
GCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGACTGCAA
AGCTCGGCTGGAGAGACAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCG
ATCCCGCTACTGGTCTTGCTGCCACAACCCTCGGTCCACCTAGA
Done.