Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 98 of 138
Found at i:15521898 original size:159 final size:157
Alignment explanation
Indices: 15521523--15522024 Score: 482
Period size: 159 Copynumber: 3.2 Consensus size: 157
15521513 AACTCCATAT
* * *
15521523 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * *
15521588 CCGACCGTAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGTC-TGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCCTG-CGTGCTGCCGATC
*
15521652 CTGCTACTGCAACCCTCGATCCGGTCCGA
130 C-GCTACTGCAACCCTCGATCCGGTCAGA
* * ** * * *
15521681 TCTTAGAC-TGGGAATGAACTTCGTATGTTTAAGTCAACCCACGAAACGAGCGTACGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
15521745 GCCGATCGGAGAGACATAATGTGCAAGCCGAGGATTGGCCCGGTCCCCCTCTGCGTGCTGCCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCC-CTGCGTGCTGCCGAT
*
15521810 CC-C-ACTGCAACAATCCTCTG-TCCGG-CTAGG
129 CCGCTACTGCAAC---CCTC-GATCCGGTC-AGA
* *
15521840 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACG-GACGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTCA
* * * * * *
15521904 GTCGACCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCCGGGT-CCCCCTGCGTGCTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCCTGCGTGCTGCCGATC
* * * * * * *
15521968 CTGTTGCCGTAACCCTCGGTCTGGTCTGA
130 C-GCTACTGCAACCCTCGATCCGGTCAGA
* *
15521997 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15522025 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 52, Indels: 33
0.76 0.14 0.09
Matches are distributed among these distances:
156 10 0.04
157 49 0.18
158 101 0.37
159 109 0.39
160 7 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
GCTACTGCAACCCTCGATCCGGTCAGA
Found at i:15522034 original size:26 final size:26
Alignment explanation
Indices: 15521998--15522050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15521988 CTGGTCTGAT
*
15521998 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15522024 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15522050 C
1 C
15522051 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15522549 original size:12 final size:12
Alignment explanation
Indices: 15522529--15522559 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15522519 GAAGGATAGG
*
15522529 GGGCTAATATAA
1 GGGCCAATATAA
15522541 GGGCCAATATAA
1 GGGCCAATATAA
15522553 GGGCCAA
1 GGGCCAA
15522560 GTGTCACACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.16, G:0.29, T:0.16
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:15524787 original size:26 final size:26
Alignment explanation
Indices: 15524758--15524829 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
15524748 CTTAGACTGG
*
15524758 GAATGAACTCTGTATGCCTAGACATA
1 GAATGAACTCCGTATGCCTAGACATA
*
15524784 GAATGAACTCCGTATGCCTAGACATG
1 GAATGAACTCCGTATGCCTAGACATA
15524810 GAATGAACTCCGTATGCCTA
1 GAATGAACTCCGTATGCCTA
15524830 AGCCAACCCA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (26 bp):
GAATGAACTCCGTATGCCTAGACATA
Found at i:15525266 original size:26 final size:26
Alignment explanation
Indices: 15525237--15525289 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15525227 TCGATCCGAT
*
15525237 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
15525263 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15525289 C
1 C
15525290 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15525654 original size:26 final size:26
Alignment explanation
Indices: 15525616--15525668 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15525606 CCGGTCCGAT
*
15525616 CTTAGACTCGGAATGAACTTCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
15525642 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TCGGAATGAACTCCGTATG
15525668 C
1 C
15525669 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:15526019 original size:159 final size:157
Alignment explanation
Indices: 15525647--15526021 Score: 387
Period size: 158 Copynumber: 2.4 Consensus size: 157
15525637 GTATGCTTAG
* * **
15525647 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACC
1 ACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCACCCGACC
* ** * * * * *
15525712 GGAGAGGCAAAATGTGCAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCTGTTGC
65 GAAGAGGCAAAATACGCAAGCCAAAGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCCGTTAC
* * * * *
15525777 CGCAACCCTCAGTCTGGTTTGATCTTAG
130 CACAACCCTCAGTCTGGTTGGAGCATAC
* ** * * ** *
15525805 AC-TGGGAATGAACTCTGTATGCCTAAGTTAATCCATGAAACGAGCCTGCAAGTGCTGACCCGAC
1 ACAT-GGAATGAACTC-CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCACCCGAC
* * *
15525869 CGAAGAGGCATAATACGTAAGCCAAAGATC-GACCCGATCCCCCTCTGCATGCTGCCGGTCCCGT
64 CGAAGAGGCAAAATACGCAAGCCAAAGATCAG-CCCGATCCCCC-CTGCATGCTGCCGATCCCGT
* *
15525933 TACCACAACCCTCGGTCTGGTTGGGGCATAC
127 TACCACAACCCTCAGTCTGGTTGGAGCATAC
*
15525964 ACATGGAATGAACTACCTATGCCTAAGCCAACCCATGAAATG-GACGTGCGGGTGCTCA
1 ACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGTGCTCA
15526022 GCTGGCTGAA
Statistics
Matches: 171, Mismatches: 39, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 84 0.49
159 83 0.49
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
ACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCACCCGACCG
AAGAGGCAAAATACGCAAGCCAAAGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCCGTTACC
ACAACCCTCAGTCTGGTTGGAGCATAC
Found at i:15526033 original size:159 final size:157
Alignment explanation
Indices: 15525647--15526037 Score: 385
Period size: 159 Copynumber: 2.5 Consensus size: 157
15525637 GTATGCTTAG
* *
15525647 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-TCGAC
1 ACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCT-GAC
* ** * * * * *
15525711 CGGAGAGGCAAAATGTGCAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCTGTTG
64 CGAAGAGGCAAAATACGCAAGCCAAAGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCCGTTA
* * * * *
15525776 CCGCAACCCTCAGTCTGGTTTGATCTTAG
129 CCACAACCCTCAGTCTGGTTGGAGCATAC
* ** * * ** * * *
15525805 AC-TGGGAATGAACTCTGTATGCCTAAGTTAATCCATGAAACGAGCCTGCAAGTGCTGACCCGAC
1 ACAT-GGAATGAACTC-CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGAC
* * *
15525869 CGAAGAGGCATAATACGTAAGCCAAAGATC-GACCCGATCCCCCTCTGCATGCTGCCGGTCCCGT
64 CGAAGAGGCAAAATACGCAAGCCAAAGATCAG-CCCGATCCCCC-CTGCATGCTGCCGATCCCGT
* *
15525933 TACCACAACCCTCGGTCTGGTTGGGGCATAC
127 TACCACAACCCTCAGTCTGGTTGGAGCATAC
* *
15525964 ACATGGAATGAACTACCTATGCCTAAGCCAACCCATGAAATG-GACGTGCGGGTGCTCAGCTGGC
1 ACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGTGCTCAGCTGAC
*
15526028 TGAAGAGGCA
64 CGAAGAGGCA
15526038 GAATGCACAA
Statistics
Matches: 182, Mismatches: 43, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 83 0.46
159 95 0.52
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (157 bp):
ACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGACCG
AAGAGGCAAAATACGCAAGCCAAAGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCCGTTACC
ACAACCCTCAGTCTGGTTGGAGCATAC
Found at i:15526158 original size:26 final size:26
Alignment explanation
Indices: 15526117--15526169 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15526107 TCGATCTGAT
15526117 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
15526143 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15526169 C
1 C
15526170 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15527356 original size:159 final size:157
Alignment explanation
Indices: 15526969--15527476 Score: 439
Period size: 158 Copynumber: 3.2 Consensus size: 157
15526959 AACTCCGTAT
* ** * * * * * *
15526969 GCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
* * ** ** * ** * *
15527034 CCGACCGGAGAGGCAGAATGTGCAAGTTGGGGATCGGCTCGGTACCCCCGTGCGTGCTGTCCATC
66 CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAAT-CCCCC-TACGTGCTGTCGATC
** * *
15527099 TTGCTGCCATAACCCTCAGT-CGGTCT-GA
129 CCGCTGCCACAACCCTCGGTCCGG-CTGGA
* * *** * * * ** *
15527127 TCTTAGAC-TGAAAATGAACTCGGAATGCATAAGTCAACCCACGAAACGAGCGTACAGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCA
* * * *
15527191 GCCGGCCGAAGAGGCATAATGCATAAGCCGGTGATCGGCCCAATCCCCCTCTACGTGCTG-CTGG
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAAT-CCCC-CTACGTGCTGTC-GA
15527255 TCCCGCTGCCACAACCCTCGGTCCGGCTGGA
127 TCCCGCTGCCACAACCCTCGGTCCGGCTGGA
* *
15527286 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
* * * * *** * *
15527351 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCTGCGTGCTGTCGATCCT
66 CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAATCCCCCTACGTGCTGTCGATCCC
* * *
15527416 GCTGCCGCAACCCTCGGTCTGGCTGGG
131 GCTGCCACAACCCTCGGTCCGGCTGGA
*
15527443 GCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGC
15527477 TAAAACATGA
Statistics
Matches: 280, Mismatches: 63, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
157 73 0.26
158 117 0.42
159 88 0.31
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAATCCCCCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGGCTGGA
Found at i:15527489 original size:157 final size:157
Alignment explanation
Indices: 15526969--15527570 Score: 534
Period size: 157 Copynumber: 3.8 Consensus size: 157
15526959 AACTCCGTAT
* ** * * *
15526969 GCTTAGGCATGGAATGAACTCTGTATGCCTAAGC-CAACCTACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAACC-ACGAAACGAGCGTGCAGGCGCTCA
* ** * *
15527033 GCCGACCGGAGAGGCAGAATGTGCAAGTTGGGGATCGG-CTCGGTACCCCCGTGCGTGCTGTCCA
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTACCCCC-TACGTGCTGTCGA
* * *
15527097 TCTTGCTGCCATAACCCTCAGTCGGTCT-GA
128 TCCTGCTGCCACAACCCTCGGTCGG-CTGGA
* * *** * * * * *
15527127 TCTTAGAC-TGAAAATGAACTCGGAATGCATAAG-TCAACCCACGAAACGAGCGTACAGGTGCTG
1 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCT-AAACCACGAAACGAGCGTGCAGGCGCTC
* * * ** * *** *
15527190 AGCCGGCCGAAGAGGCATAATGCATAAGCCGGTGATCGGCCCAATCCCCCTCTACGTGCTG-CTG
64 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTACCCC-CTACGTGCTGTC-G
* *
15527254 GTCCCGCTGCCACAACCCTCGGTCCGGCTGGA
127 ATCCTGCTGCCACAACCCTCGGT-CGGCTGGA
* * * * *
15527286 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAACCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
15527351 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGT-CCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTACCCCCTACGTGCTGTCGATCC
* *
15527415 TGCTGCCGCAACCCTCGGTCTGGCTGGG
131 TGCTGCCACAACCCTCGGTC-GGCTGGA
* * * * *
15527443 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAAACATGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAACCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * *
15527508 CCGATCGGAGGGGTAGAATGCGTAAGCCGAGGATCGACCTGGTACCCCCTATGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTACCCCCTACGTGCTGTCGAT
15527571 TCTACTGCTG
Statistics
Matches: 349, Mismatches: 82, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 128 0.37
158 127 0.36
159 91 0.26
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAACCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTACCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCGGCTGGA
Found at i:15527665 original size:26 final size:26
Alignment explanation
Indices: 15527614--15527666 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15527604 CTGATCTGAT
**
15527614 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15527640 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15527666 C
1 C
15527667 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15528689 original size:26 final size:25
Alignment explanation
Indices: 15528639--15528690 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15528629 GGTTCAGACT
*
15528639 CTTAGACTGGAATGAACTCTATATG
1 CTTAGACTGGAATGAACTCCATATG
*
15528664 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
15528690 C
1 C
15528691 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:15529322 original size:196 final size:196
Alignment explanation
Indices: 15528949--15529332 Score: 439
Period size: 196 Copynumber: 2.0 Consensus size: 196
15528939 GTGCTGCTGA
* * * * *
15528949 TCCTGCTGTTGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCATATGGTTAGAT
1 TCCTGCTATTGCAACCCTCGATCTGATCTGATCTTAAACTGGAAATGAACTCCATATGCTTAGAC
* * * * * * * * * *
15529014 GGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCATACGGGCATTCAACCGATCAG
66 AGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCACTCAACCGACCAG
* * *
15529079 AAAGGCAGATGCACATGCTGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTACTACTG
131 AAAGGCAGATGCACAAGCCGAGGATCGACCCGGTCCCCCCCTGCGTGCTATCGATCCTACTACTG
15529144 G
196 G
* * * *
15529145 TCCTGCTATTGCAACCCTCGGTTTGGTCTGATCTTAAACTGGAAATGAACTCCGTATGCTTAGAC
1 TCCTGCTATTGCAACCCTCGATCTGATCTGATCTTAAACTGGAAATGAACTCCATATGCTTAGAC
* * * * *
15529210 ATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAACCGGCCGG
66 AGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCACTCAACCGACCAG
* * * * * *
15529275 AGAGGTAGAATGCGCAAGCCGGGGA-CTGGCCCGGT-CCCCCTTGCGTGCTATCGATCCT
131 AAAGGCAG-ATGCACAAGCCGAGGATC-GACCCGGTCCCCCCCTGCGTGCTATCGATCCT
15529333 GTTGCAGCAA
Statistics
Matches: 153, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
196 134 0.88
197 19 0.12
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (196 bp):
TCCTGCTATTGCAACCCTCGATCTGATCTGATCTTAAACTGGAAATGAACTCCATATGCTTAGAC
AGGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCACTCAACCGACCAG
AAAGGCAGATGCACAAGCCGAGGATCGACCCGGTCCCCCCCTGCGTGCTATCGATCCTACTACTG
G
Found at i:15529707 original size:26 final size:26
Alignment explanation
Indices: 15529678--15529730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15529668 TCGGTCCGAT
15529678 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
15529704 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15529730 C
1 C
15529731 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15530288 original size:158 final size:155
Alignment explanation
Indices: 15529861--15530289 Score: 377
Period size: 158 Copynumber: 2.7 Consensus size: 155
15529851 GCCGATCCTG
*
15529861 CTACCACAACCCTCAGTTTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTACCACAACCCTCAG-TTGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
15529926 CATGAAACGAGCGTGTAGGCGCTCAGTCGGTCGGAGAAGCG-GAATGCGTAAGTCGAGGATCAGC
65 CATGAAACGAGCGTATGGGCGCTCAGCCGGTC-GA-AAG-GAGAATGCGTAAGTCGAGGATCAGC
* * * **
15529990 CCGGTCCCCCGTGCGTGCTGTCAATCTTG
127 ACGGTCCCCCGTACGTACTGTCAATCTCA
* * * ** * * *
15530019 CTATCATAACCCT-AGGTTCGGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCA
1 CTACCACAACCCTCA-GTT-GAT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
15530081 ACCCATGAAACGAGCGTACGGGCACTGAGCCGATCGAAGAGGCATAATGCTTAAGTCG-GGATCG
62 ACCCATGAAACGAGCGTATGGGCGCTCAGCCGGTCGAA-AGG-AGAATGCGTAAGTCGAGGATCA
* **
15530145 GCATGGTCCCTCTC-TACGTACTGTCGGT-TCCA
125 GCACGGTCCC-C-CGTACGTACTGTCAATCT-CA
* * *
15530177 CTGCCACAACCCTCAGTCTGATTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
1 CTACCACAACCCTCAGT-TGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* *
15530242 CATGGAACGAGCGTATGGGTGCTCAGCCGGTCAGAAAGGTAGAATGCG
65 CATGAAACGAGCGTATGGGCGCTCAGCCGGTC-GAAAGG-AGAATGCG
15530290 CAAACCGGGG
Statistics
Matches: 209, Mismatches: 47, Indels: 30
0.73 0.16 0.10
Matches are distributed among these distances:
156 2 0.01
157 23 0.11
158 176 0.84
159 8 0.04
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (155 bp):
CTACCACAACCCTCAGTTGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ATGAAACGAGCGTATGGGCGCTCAGCCGGTCGAAAGGAGAATGCGTAAGTCGAGGATCAGCACGG
TCCCCCGTACGTACTGTCAATCTCA
Found at i:15530381 original size:684 final size:685
Alignment explanation
Indices: 15529202--15530529 Score: 1642
Period size: 684 Copynumber: 1.9 Consensus size: 685
15529192 AACTCCGTAT
15529202 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAA
* * * * * *
15529267 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGACTGGCCCGGTCCCCCTTGCGTGCTATCGATCC
66 CCGGCCGGAGAAGCAGAATGCGCAAGCCGAGGACTAGCCCGGTCCCCCGTGCGTGCTATCAATCC
* * *
15529332 TGTTGCAGCAACCCTCAGTCCATTCCAATCTTAGACTGGGAATGAGCTCTATATGCCTAAGTCAA
131 TGTTGCAGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCTATATGCATAAGTCAA
* *
15529397 CCCACAAAACGAGCGTTAAGGCGCTGAGCCGATCGGAGAGGCATAATGCGCAAGTCGAGGATCGA
196 CCCACAAAACGAGCGTTAAGGCACTGAGCCGATCGAAGAGGCATAATGCGCAAGTCGAGGATCGA
* ** * *
15529462 CCCGATCCCCCCCTGTGTGCTGCCGATCCCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGAC
261 CACGATCCCCCCCTACGTACTGCCGATCCCACTGCCACAACCCTCGATCTGACTGGGGCTTAGAC
* * * * *
15529527 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGTGCTCAGCTGGCCGG
326 ATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACGGGTGCTCAGCCGGCCAG
**
15529592 AAAGGCAGAATGCACAAGACGGGGATCGACCCAATTCCCCCTACGTGCTGTCGATCCTACTGTCG
391 AAAGGCAGAATGCACAAGACGGGGATCGACCCAATTCCCCCTACGTGCTACCGATCCTACTGTCG
* *
15529657 CAACCCTCGATTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
456 CAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * ** * * *
15529722 TCTGTATGCCTAAGTCAACCAACGAAATGAGGGTG-TGGTCGCTCAGCCGGTCGTAGAGGCCGAT
521 TCCGTATGCCTAAGTCAACCAACGAAACGAGGGTGCGGGT-GCTCAGCCGACCGGAGAGGCCAAC
* ** * *
15529786 TGGAGAGGCATAATGTGCAAGCCTG-GGATCAACCCGGTCCCCCTATGCATGCCGCCGATCTCGC
585 CGGAGAGGCATAATACGCAAGCC-GAGGATCAACCCGATCCCCCTATACATGCCGCCGATCTCGC
15529850 TGCCGATCCTGCTACCACAACCCTCAGTTTGACTGGG
649 TGCCGATCCTGCTACCACAACCCTCAGTTTGACTGGG
* *
15529887 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTA-GG-CGCTC
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC--GTACGGCCGCTC
** * * * * *
15529950 AGTCGGTCGGAGAAGCGGAATGCGTAAGTCGAGGA-TCAGCCCGGTCCCCCGTGCGTGCTGTCAA
64 AACCGGCCGGAGAAGCAGAATGCGCAAGCCGAGGACT-AGCCCGGTCCCCCGTGCGTGCTATCAA
* * * * ** *
15530014 TCTTGCTAT-CA-TAACCCT-AGGTTCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCAT
128 TCCTG-T-TGCAGCAACCCTCA-GTCCAGTCCAATCTTAGACTGGGAATGAACTCT-ATATGCAT
** * **
15530075 AAGTCAACCCATGAAACGAGCG-TACGGGCACTGAGCCGATCGAAGAGGCATAATGCTTAAGTCG
189 AAGTCAACCCACAAAACGAGCGTTA-AGGCACTGAGCCGATCGAAGAGGCATAATGCGCAAGTCG
* * * * * * * * *
15530139 -GGATCGGCATGGTCCCTCTCTACGTACTGTCGGTTCCACTGCCACAACCCTC-AGTCTGATTGG
253 AGGATCGACACGATCCCCCCCTACGTACTGCCGATCCCACTGCCACAACCCTCGA-TCTGACTGG
* * *
15530202 GGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGGAAC-GAGCGTATGGGTGCTC
317 GGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTACGGGTGCTC
* * * **
15530266 AGCCGGTCAGAAAGGTAGAATGCGCAA-ACCGGGGATCGACCCGGTTCCCCCTACGTGCTACCGA
381 AGCCGGCCAGAAAGGCAGAATGCACAAGA-CGGGGATCGACCCAATTCCCCCTACGTGCTACCGA
* * * *
15530330 TCCTGCTGTCGTAACCCTC-AGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
445 TCCTACTGTCGCAACCCTCGA-TCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* * *
15530394 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCCGACCG
509 CTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGGGTGCGGGTGCTCAGCCGACCG
* * * *
15530459 GAGAGGCCAACCGGAGAGGCATAATACGCAAGCCGAGGATCAGCTCGATCCCCCTCTACATGCTG
574 GAGAGGCCAACCGGAGAGGCATAATACGCAAGCCGAGGATCAACCCGATCCCCCTATACATGCCG
15530524 CCGATC
639 CCGATC
15530530 CTGCTACCGA
Statistics
Matches: 542, Mismatches: 87, Indels: 29
0.82 0.13 0.04
Matches are distributed among these distances:
683 6 0.01
684 326 0.60
685 201 0.37
686 5 0.01
687 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (685 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAA
CCGGCCGGAGAAGCAGAATGCGCAAGCCGAGGACTAGCCCGGTCCCCCGTGCGTGCTATCAATCC
TGTTGCAGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCTATATGCATAAGTCAA
CCCACAAAACGAGCGTTAAGGCACTGAGCCGATCGAAGAGGCATAATGCGCAAGTCGAGGATCGA
CACGATCCCCCCCTACGTACTGCCGATCCCACTGCCACAACCCTCGATCTGACTGGGGCTTAGAC
ATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACGGGTGCTCAGCCGGCCAG
AAAGGCAGAATGCACAAGACGGGGATCGACCCAATTCCCCCTACGTGCTACCGATCCTACTGTCG
CAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCAACGAAACGAGGGTGCGGGTGCTCAGCCGACCGGAGAGGCCAACC
GGAGAGGCATAATACGCAAGCCGAGGATCAACCCGATCCCCCTATACATGCCGCCGATCTCGCTG
CCGATCCTGCTACCACAACCCTCAGTTTGACTGGG
Found at i:15530391 original size:26 final size:26
Alignment explanation
Indices: 15530362--15530414 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15530352 CCGATCTGAT
15530362 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15530388 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15530414 C
1 C
15530415 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15530651 original size:138 final size:138
Alignment explanation
Indices: 15530403--15530676 Score: 395
Period size: 138 Copynumber: 2.0 Consensus size: 138
15530393 ACTGGGGATG
* * * *
15530403 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCCGACCGGAGAGGCCA
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCGGAAAAGCCA
* * *
15530468 ACCGGAGAGGCATAATACGCAAGCCGAGGATCAGCTCGATCCCCCTCTACATGCTGCCGATCCTG
66 ACCGGAGAGGCATAATACGCAAGCCAAGGATCAGCTCGATCCCCCTCTACATGCTGCAGATCCCG
15530533 CTACCGAT
131 CTACCGAT
* ** *
15530541 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAAAAGCTA
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCGGAAAAGCCA
** * * * *
15530606 GTCGGAGAGGCATAATGCGTAAGCCAAGGATCAGCTCGATCCCCCTTTACGTGCTGCAGATCCCG
66 ACCGGAGAGGCATAATACGCAAGCCAAGGATCAGCTCGATCCCCCTCTACATGCTGCAGATCCCG
15530671 CTACCG
131 CTACCG
15530677 GTCCTACTGC
Statistics
Matches: 119, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 119 1.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (138 bp):
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCGGAAAAGCCA
ACCGGAGAGGCATAATACGCAAGCCAAGGATCAGCTCGATCCCCCTCTACATGCTGCAGATCCCG
CTACCGAT
Found at i:15536831 original size:26 final size:26
Alignment explanation
Indices: 15536802--15536854 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15536792 CCGATCCGAT
*
15536802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15536828 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15536854 C
1 C
15536855 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15538441 original size:158 final size:156
Alignment explanation
Indices: 15537889--15538701 Score: 607
Period size: 159 Copynumber: 5.1 Consensus size: 156
15537879 ACTCTATATG
* * * *
15537889 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT-AGT
* * * * * * * *
15537954 CGGCCGGAGAGGCAAAATGTGCAAGCTGAGGATTGGCCTGGTCCCCCCCTGCGTGCTGTCGATCC
65 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCACTGCGTGCTGTCGATCC
15538019 TGCTACCATAACCCTCGGTTCGATCCGAT
130 TGCTACCATAACCCTC-GTTCG-TCCGAT
* * * * * * * *
15538048 CTTAGAC-TGGGAATGAAATCCATATGCATAAGTCAACCCAAGAAATGAGCGTGTGGGCACAGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAC-TAG
* * * * *
15538112 TCGATCGAAGAGGCATAATACGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGGCGGTC
64 TCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCACTGCGTGCTGTCGATC
** * * * ** **
15538177 CCACTGCCACAACCCTCGGTCTGGTTGGGG
129 CTGCTACCATAACCCTC-GT-TCGTCCGAT
* * *
15538207 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT-AGT
* * * * * *
15538272 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCACTGTGTGCTGTCGATCC
65 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCACTGCGTGCTGTCGATCC
*
15538336 TGCTACCGTAACCCTCAGTTCAGTCCGAT
130 TGCTACCATAACCCTC-GTTC-GTCCGAT
* * *
15538365 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGCACT-GT
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAGT
* * * * * * ** * *
15538428 GCTGGCCGTAGAGGCATAATGTGCAAGCTGAGGATTGGCCCAGTCCCCCTGTGTGTGTTGTCGAT
65 -C-GACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCACTGCGTGCTGTCGAT
* * * * * * * **
15538493 CCCGCTGCCACAACGCTCGGTCCGACTGGGG
128 CCTGCTACCATAACCCTC-GTTCGTC-CGAT
* * * * *
15538524 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCATGTGGGCGCTCA-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCACT-AG
* * * * * * * * * *
15538587 ACCAGCCGGAGAGGCAGAATACGCAAGCAGGGGATCGGTCTGGTCCCCC-CTGCGTGCTGTAGAT
64 TCGA-CCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCACTGCGTGCTGTCGAT
* * * * *
15538651 CCTGGTGCCGTAACCCTCGGTCCGATCTGAT
128 CCTGCTACCATAACCCTC-GTTCG-TCCGAT
15538682 CTTAGAC-TGGTAATGAACTC
1 CTTAGACATGG-AATGAACTC
15538702 TATATACTTA
Statistics
Matches: 509, Mismatches: 127, Indels: 37
0.76 0.19 0.05
Matches are distributed among these distances:
156 2 0.00
157 6 0.01
158 168 0.33
159 329 0.65
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAGTC
GACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCACTGCGTGCTGTCGATCCT
GCTACCATAACCCTCGTTCGTCCGAT
Found at i:15538476 original size:317 final size:316
Alignment explanation
Indices: 15537888--15538706 Score: 980
Period size: 317 Copynumber: 2.6 Consensus size: 316
15537878 AACTCTATAT
* * *
15537888 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * *
15537953 TCGGCCGGAGAGGCAAAATGTGCAAGCTGAGGATTGGCCTGGTCCCCCCCTGCGTGCTGTCGATC
66 TCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCTGGT-CCCCCCTGCGTGCTGTCGATC
* *
15538018 CTGCTACCATAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAAATCCATATGCATAAGTCA
130 CTGCTACCGTAACCCTC-GTTCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * *
15538083 ACCCAAGAAATGAGCGTGTGGGCACAGAGTCGATCGAAGAGGCATAATACGCAAGCCGAGGATCG
194 ACCCAAGAAACGAGCGTGTAGGCACAGAGTCGACCGAAGAGGCATAATACGCAAGCCGAGGATCG
* * * **
15538148 GCCCGGTCCCCCTCTGCGTGCTGGCGGTCCCACTGCCACAACCCTCGGTCTGGTTGGG
259 GCCCAGTCCCCCTCTGCGTGCTGGCGATCCCACTGCCACAACCCTCGGTCCGACTGGG
* * *
15538206 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * *
15538271 TCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCACTGTGTGCTGTCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
* *
15538336 TGCTACCGTAACCCTCAGTTC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
131 TGCTACCGTAACCCTC-GTTCGA-TCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * * * * ** *
15538400 ACCCATGAAACGAGCGT-TCAGGCACTGTG-CTGGCCGTAGAGGCATAATGTGCAAGCTGAGGAT
194 ACCCAAGAAACGAGCGTGT-AGGCACAGAGTC-GACCGAAGAGGCATAATACGCAAGCCGAGGAT
* * * * * * *
15538463 TGGCCCAGTCCCCCTGTGTGTGTTGTCGATCCCGCTGCCACAACGCTCGGTCCGACTGGG
257 CGGCCCAGTCCCCCTCTGCGTGCTGGCGATCCCACTGCCACAACCCTCGGTCCGACTGGG
* * * *
15538523 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGTGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGGGCGTGCGGGCGCTCAG
* * * * *
15538587 ACCAGCCGGAGAGGCAGAATACGCAAGCAGGGGATCGGTCTGGTCCCCCCTGCGTGCTGTAGATC
66 TCGA-CCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
* * * * * *
15538652 CTGGTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGTAATGAACTCTATAT
130 CTGCTACCGTAACCCTC-GTTCGATCCGATCTTAGACTGGGAATGAACTCCATAT
15538707 ACTTAGACTA
Statistics
Matches: 422, Mismatches: 74, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
316 5 0.01
317 325 0.77
318 92 0.22
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGGGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCGTAACCCTCGTTCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAAC
CCAAGAAACGAGCGTGTAGGCACAGAGTCGACCGAAGAGGCATAATACGCAAGCCGAGGATCGGC
CCAGTCCCCCTCTGCGTGCTGGCGATCCCACTGCCACAACCCTCGGTCCGACTGGG
Found at i:15539335 original size:11 final size:11
Alignment explanation
Indices: 15539321--15539346 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15539311 ACTCTCCAGT
15539321 GATGCTCCGAC
1 GATGCTCCGAC
15539332 GATGCTCCGAC
1 GATGCTCCGAC
15539343 GATG
1 GATG
15539347 GTACCCCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:15539788 original size:26 final size:26
Alignment explanation
Indices: 15539759--15539811 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15539749 CTGATCCAAT
15539759 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15539785 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15539811 C
1 C
15539812 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15540181 original size:159 final size:159
Alignment explanation
Indices: 15539869--15541380 Score: 926
Period size: 159 Copynumber: 9.4 Consensus size: 159
15539859 AGGCCAACCA
* * * * * * * * *
15539869 GAGAGGCAGAATGCGCTAGCTGGGGATCGGTCTGATCCCCCCTACGTGCTGTCGATCCTGCTACC
1 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCC
* * * ** * *
15539934 GCAACCCTTAG-TTCGG-TCCGATCTTAGAC-TGAGAATGAGCTCCGTATGCCTAAGTCAACCCA
66 ACAACCC-TCGTTTCGGCT-GGGGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
15539996 TGAAA-TGAGTGTTCGGGTGCTAAGCCGGTCG
128 TGAAACAGAGCGTGCGGGCGCTCAGCCGGCCG
* * * * * *
15540027 GAGATGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCAGTTCC-ACTA
1 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCC-CTGCGTGCTATC-GATCCTACTG
* * *
15540091 CCTCAACCCTCGTTTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATTCCTAAGCCAACCCAT
64 CCACAACCCTCGTTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* *
15540156 GAAACAG-GCATGCGGGCGCTCAGCCGGCCA
129 GAAACAGAGCGTGCGGGCGCTCAGCCGGCCG
* * * * * * *
15540186 GAGAGGTAGAATGCGCAAGCTGGGGACCGGCCCAGTCCCCCCTACGTGCTGTCGATCCTACTACC
1 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCC
* * * ** * *
15540251 GCAACCCTCG-GTCTGG-TCCGATCTTAGA-TTGGGAATGAACTTCGTATGCCTAA-CTCAACCC
66 ACAACCCTCGTTTC-GGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCC
* * * **
15540312 AT-AAA-ATGAACGTACGGGTGCTCAGCCGATCG
127 ATGAAACA-GAGCGTGCGGGCGCTCAGCCGGCCG
* * ** * *
15540344 GAGAGGCAGAATGCGCAAG-TCGGGGACCAGCCTGGTCTCCCATTGGGTGCTGTCGATCCTACTG
1 GAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGGTC-CCCCCTGCGTGCTATCGATCCTACTG
** * * * ** * **
15540408 CCGTAACCCTCGATCCGATCT-GATCTTAGAC-TGGAAATGAACTTCGTATGCCTAAATCAACCC
64 CCACAACCCTCGTTTCG-GCTGGGGCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCC
* * * * * ***
15540471 ACGAAA-TGAGCGTTCGGGCACTGAGCCGATTG
127 ATGAAACAGAGCGTGCGGGCGCTCAGCCGGCCG
* * * * * * *
15540503 GAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTACATGCTGTCGGTGCC-ACTG
1 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCC-CTGCGTGCTATCGAT-CCTACTG
* **
15540567 CCACAACCCTCAGTTT-GGCTGGGGCTTAGACGTGGAATGAACTCTATATGCCTAAGCCAACCCA
64 CCACAACCCTC-GTTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* *
15540631 TGAAAC-GAGTGTGCGGGTGCTCAGCCGGCCG
128 TGAAACAGAGCGTGCGGGCGCTCAGCCGGCCG
* * * * ** *
15540662 AAGAGGAAGAATACGCAAGCCGGGGATCAGCTTGGTCCCCCCCTGCATGCTGCCATTCCTGCTGC
1 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGT-CCCCCCTGC--G-TG------CT-AT-C
* * *
15540727 TGGTCCTACTGCCGCAACCCTCG-TTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
54 -GATCCTACTGCCACAACCCTCGTTTC-GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* * * *
15540791 AAGCGAACCCATGAAAC-GAGTGTGCGGGCACTCAACCGGCCG
117 AAGCCAACCCATGAAACAGAGCGTGCGGGCGCTCAGCCGGCCG
* * * ** *
15540833 AAGAGGCAGAATGCGCAAG-TCGGGGATTACCCCGG-CCCCCCTTTGTGCGT-TGCCGATCCTGC
1 GAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGGTCCCCCCTGCGTGC-TAT--CGATCCTAC
* * * * *
15540895 TGCCACAACCTTCGATCCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
62 TGCCACAACCCTCGTTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
15540960 ACGAAA-TGGGCGTGCGGGCGCTCAGCCGACAG
127 ATGAAACAGAGCGTGCGGGCGCTCAGCCGGCCG
* * * * *
15540992 GAGAGGGAGAATGCGTAAG-TCGGGGACCAGCCCGGTCCCCCCTTGCGTACTATCGATCCTGCTG
1 GAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGGTCCCCCC-TGCGTGCTATCGATCCTACTG
* * ** *
15541056 CCACAACTCTCGGTTCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCC
64 CCACAACCCTCGTTTCGG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * **
15541119 ACGAAAC-GAGCGTGTGGGTGCTGAGCCAACCG
127 ATGAAACAGAGCGTGCGGGCGCTCAGCCGGCCG
* * * ** ** ** ** * * **
15541151 AAGAGGCATAATGCGTAAGCCAGGGATTGGCCCAATCCCCCTCAACGTGCTATAGGTCCCGCTGC
1 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCC-CTGCGTGCTATCGATCCTACTGC
* * ***
15541216 CACAACCCTCAGTTT-GGTTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAAAGAT
65 CACAACCCTC-GTTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * *
15541280 GAAAC-GGGCGTGTGGGCACTCAACAGACCG
129 GAAACAGAGCGTGCGGGCGCTCAGCCGGCCG
** * * ** * *
15541310 GAGAGGCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCCTGCGTGCTGCCAATCCTGCTGCC
1 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCC
15541375 ACAACC
66 ACAACC
15541381 TTCGATCCGA
Statistics
Matches: 1070, Mismatches: 223, Indels: 122
0.76 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 14 0.01
158 177 0.17
159 693 0.65
160 42 0.04
161 7 0.01
162 2 0.00
166 2 0.00
167 1 0.00
168 2 0.00
169 10 0.01
170 4 0.00
171 115 0.11
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCC
ACAACCCTCGTTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
AACAGAGCGTGCGGGCGCTCAGCCGGCCG
Found at i:15540518 original size:317 final size:317
Alignment explanation
Indices: 15539865--15540692 Score: 737
Period size: 317 Copynumber: 2.6 Consensus size: 317
15539855 GGAGAGGCCA
* * * *
15539865 ACCAGAGAGGCAGAATGCGCTAGCTGGGGATCGG-TCTGATCCCCCCTACGTGCTGTCGATCCTG
1 ACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAG-TCCCCCCTACGTGCTGTCGATCCTA
* * *
15539929 CTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGAGAATGAGCTCCGTATGCCTAAGTCAACC
65 CTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAACTCAACC
* ** * * * * * *
15539994 CATGAAATGAGTGTTCGGGTGCTAAGCCGGTCGGAGATGCATAATGCGCAAGCTGGGGATCGGCC
130 CATAAAATGAACGTACGGGTGCTAAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGACCAGCC
* * * * *
15540059 CGATCCCCCTCTGCGTGCTATCAGTTCCACTACCTCAACCCTCGTTTCGGCTGGGGCTTAGACAT
195 CGATCCCCATCTGCGTGCTATCAGATCCACTACCTCAACCCTCGATCCGGCTGGAGCTTAGACAT
* * * * *
15540124 GGAATGAACTCCTTATTCCTAAGCCAACCCATGAAACAGGCATGCGGGCGCTCAGCCG
260 GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAGGCATGCGGGCACTCAGCCG
* * *
15540182 GCCAGAGAGGTAGAATGCGCAAGCTGGGGACCGGCCCAGTCCCCCCTACGTGCTGTCGATCCTAC
1 ACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCCTAC
* * * *
15540247 TACCGCAACCCTC-GGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAACTCAACC
66 TACCGCAACCCTCAGTTC-GGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAACTCAACC
*
15540311 CATAAAATGAACGTACGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAG-TCGGGGACCAGC
130 CATAAAATGAACGTACGGGTGCTAAGCCGATCGGAGAGGCAGAATGCGCAAGCT-GGGGACCAGC
* * * * * * *
15540375 CTGGTCTCCCAT-TGGGTGCTGTC-GATCCTACTGCCGT-AACCCTCGATCCGATCT-GATCTTA
194 CCGATC-CCCATCTGCGTGCTATCAGATCC-ACTACC-TCAACCCTCGATCCG-GCTGGAGCTTA
* * * * * *
15540436 GAC-TGGAAATGAACTTCGTATGCCTAAATCAACCCACGAAA-TGAGCGTTCGGGCACTGAGCCG
255 GACATGG-AATGAACTCCGTATGCCTAAACCAACCCACGAAACAG-GCATGCGGGCACTCAGCCG
*** * * ** * * *
15540499 ATTGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTACATGCTGTCGGTGCC-
1 ACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCC-CTACGTGCTGTCGAT-CCT
* * * * ** **
15540563 ACTGCCACAACCCTCAGTTTGG-CTGGGGCTTAGACGTG-GAATGAACTCTATATGCCTAAGC-C
64 ACTACCGCAACCCTCAGTTCGGTC-CGATCTTAGAC-TGAGAATGAACTCCGTATGCCTAA-CTC
* * ** * * ** * * * * *
15540625 AACCCATGAAACGAGTGTGCGGGTGCTCAGCCGGCCGAAGAGGAAGAATACGCAAGCCGGGGATC
126 AACCCATAAAATGAACGTACGGGTGCTAAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGACC
15540690 AGC
191 AGC
15540693 TTGGTCCCCC
Statistics
Matches: 412, Mismatches: 83, Indels: 31
0.78 0.16 0.06
Matches are distributed among these distances:
316 12 0.03
317 275 0.67
318 118 0.29
319 7 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (317 bp):
ACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCCTAC
TACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAACTCAACCC
ATAAAATGAACGTACGGGTGCTAAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGACCAGCCC
GATCCCCATCTGCGTGCTATCAGATCCACTACCTCAACCCTCGATCCGGCTGGAGCTTAGACATG
GAATGAACTCCGTATGCCTAAACCAACCCACGAAACAGGCATGCGGGCACTCAGCCG
Found at i:15540963 original size:489 final size:469
Alignment explanation
Indices: 15539956--15541423 Score: 1124
Period size: 489 Copynumber: 3.1 Consensus size: 469
15539946 TCGGTCCGAT
* * * *
15539956 CTTAGACTGAGAATGAGCTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCGGGTGCTAAGC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTAAGC
* * * * * * *
15540021 CGGTCGGAGATGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCAGTTC
65 CGATAGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTATC-GGTC
* * *
15540086 CACTACCTCAACCCTCGTTTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATTCCTAAGCCAA
129 CACTGCCACAACCCTCGTTT-GGCTGGGGCTTAGAC-TGGAATGAACT-CTTATGCCTAAGCCAA
* * * *
15540151 CCCATGAAAC-AGGCATGCGGGCGCTCAGCCGGCC-AGAGAGGTAGAATGCGCAAGCTGGGGACC
191 CCCATGAAACGAGG--TGCGGGTGCTCAGCCGGCCGA-AGAGGAAGAATACGCAAGCCGGGGACC
* * * *
15540214 GGCCCAGTCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGA
253 AGCCCAGTCCCCCCTACGTCCTGTCGATCCTACTACCGCAACCCTCGGTCTGCTCCGAGCTTAGA
* * * ** * *
15540279 TTGGGAATGAACTTCGTATGCCTAACTCAACCCATAAAATGAACGTACGGGTGCTCAGCCGATCG
318 ATGGGAATGAACTCCGTATGCCTAACTCAACCCATAAAACGAACGTACGGGCACTCAACCGACCG
* * * * * * *
15540344 GAGAGGCAGAATGCGCAAGTCGGGGACCAGCCTGGTCTCCCATTGGGTGCTGTCGATCCTACTGC
383 AAGAGGCAGAATGCGCAAGTCGGGGACCACCCCGGCCCCCCATTGGGCGCTGCCGATCCTACTGC
** *
15540409 CGTAACCCTCGATCCGATCTGAT
448 CACAACCCTCGATCCGA-CTGAG
* * * *
15540432 CTTAGACTGGAAATGAACTTCGTATGCCTAAATCAACCCACGAAATGAGCGTTCGGGCACTGAGC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTAAGC
* * * * *
15540497 CGATTGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTACATGCTGTCGGTGC
65 CGATAGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGGT-C
15540562 CACTGCCACAACCCTCAGTTTGGCTGGGGCTTAGACGTGGAATGAACTCTATATGCCTAAGCCAA
129 CACTGCCACAACCCTC-GTTTGGCTGGGGCTTAGAC-TGGAATGAACTCT-TATGCCTAAGCCAA
*
15540627 CCCATGAAACGAGTGTGCGGGTGCTCAGCCGGCCGAAGAGGAAGAATACGCAAGCCGGGGATCAG
191 CCCATGAAACGAG-GTGCGGGTGCTCAGCCGGCCGAAGAGGAAGAATACGCAAGCCGGGGACCAG
*** * * *
15540692 CTTGGTCCCCCCCTGCATGCTGCCATTCCTGCTGCTGGTCCTACTGCCGCAACCCTCGTTCTGAC
255 CCCAGT-CCCCCCT--A--C-G----TCCTG-T-C-GATCCTACTACCGCAACCCTCGGTCTG-C
* * * * ** *
15540757 T-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-GAACCCATGAAACGAGTGTGCGGG
306 TCCGAGCTTAGA-ATGGGAATGAACTCCGTATGCCTAA-CTCAACCCATAAAACGAACGTACGGG
* ** * * *
15540819 CACTCAACCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATTACCCCGGCCCCCCTTTGTGCGTT
369 CACTCAACCGACCGAAGAGGCAGAATGCGCAAGTCGGGGACCACCCCGGCCCCCCATTGGGCGCT
* * *
15540884 GCCGATCCTGCTGCCACAACCTTCGATCCTG-CTGGGG
434 GCCGATCCTACTGCCACAACCCTCGATCC-GACT-GAG
* * * * *
15540921 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTAAGC
* * * * * * * *
15540986 CGACAGGAGAGGGAGAATGCGTAAGTCGGGGACCAGCCCGGTCCCCC-CTTGCGTACTATCGATC
65 CGATAGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTC-TGCGTGCTATCGGTC
* * * ** * *
15541050 CTGCTGCCACAACTCTCGGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
129 C-ACTGCCACAACCCTC-GTTTGG-CTGGGGCTTAGACT-GGAATGAACT-CTTATGCCTAAGCC
* * * ** * * * * * **
15541114 AACCCACGAAACGAGCGTGTGGGTGCTGAGCCAACCGAAGAGGCATAATGCGTAAGCCAGGGATT
189 AACCCATGAAACGAG-GTGCGGGTGCTCAGCCGGCCGAAGAGGAAGAATACGCAAGCCGGGGACC
* * * * * * * ** * * * * * ** *
15541179 GGCCCAATCCCCCTCAACGTGCTATAGGTCCCGCTGCCACAACCCTCAGTTTGGTTGGGGCTTAG
253 AGCCCAGTCCCCC-CTACGTCCTGTCGATCCTACTACCGCAACCCTCGGTCTGCTCCGAGCTTAG
* *** * ** ** *
15541244 ACAT-GGAATGAACTCCATATGCCTAAGC-CAAAAGATGAAACGGGCGTGTGGGCACTCAACAGA
317 A-ATGGGAATGAACTCCGTATGCCTAA-CTCAACCCATAAAACGAACGTACGGGCACTCAACCGA
* * * * ** * * * * *
15541307 CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCC--TGCGTGCTGCCAATCCTG
380 CCGAAGAGGCAGAATGCGCAAGTCGGGGACCACCCCGG-CCCCCCATTGGGCGCTGCCGATCCTA
* * * *
15541370 CTGCCACAACCTTCGATCCGATTCAAT
444 CTGCCACAACCCTCGATCCGACT-GAG
15541397 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
15541424 TTAGACTGGG
Statistics
Matches: 801, Mismatches: 155, Indels: 72
0.78 0.15 0.07
Matches are distributed among these distances:
475 7 0.01
476 273 0.34
477 128 0.16
478 7 0.01
479 2 0.00
480 3 0.00
481 1 0.00
482 1 0.00
484 1 0.00
485 1 0.00
486 4 0.00
487 2 0.00
488 12 0.01
489 349 0.44
490 10 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (469 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTAAGCC
GATAGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGGTCCA
CTGCCACAACCCTCGTTTGGCTGGGGCTTAGACTGGAATGAACTCTTATGCCTAAGCCAACCCAT
GAAACGAGGTGCGGGTGCTCAGCCGGCCGAAGAGGAAGAATACGCAAGCCGGGGACCAGCCCAGT
CCCCCCTACGTCCTGTCGATCCTACTACCGCAACCCTCGGTCTGCTCCGAGCTTAGAATGGGAAT
GAACTCCGTATGCCTAACTCAACCCATAAAACGAACGTACGGGCACTCAACCGACCGAAGAGGCA
GAATGCGCAAGTCGGGGACCACCCCGGCCCCCCATTGGGCGCTGCCGATCCTACTGCCACAACCC
TCGATCCGACTGAG
Found at i:15541106 original size:648 final size:645
Alignment explanation
Indices: 15540094--15541373 Score: 1518
Period size: 648 Copynumber: 2.0 Consensus size: 645
15540084 TCCACTACCT
* * *
15540094 CAACCCTCGTTTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATTCCTAAGCCAACCCATGAA
1 CAACCCTCGTTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * * *
15540159 ACAGGCATGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATGCGCAAGCTGGGGACCGGCCCAGTCC
66 ACAGG-ATGCGGGCACTCAACCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGACCGACCCAGGCC
* * * * * *
15540224 CCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGA
130 CCCCTACGTGCTGCCGATCCTACTACCACAACCCTCGATCTGCTCCGAGCTTAGAATGGGAATGA
* * * *
15540289 ACTTCGTATGCCTAACTCAACCCATAAAATGAACGTACGGGTGCTCAGCCGATCGGAGAGGCAGA
195 ACTCCCTATGCCTAACTCAACCCACAAAATGAACGTACGGGCGCTCAGCCGATCGGAGAGGCAGA
* * * * * **
15540354 ATGCGCAAGTCGGGGACCAGCCTGGTCTCCCATTGGGTGCTGTCGATCCTACTGCCGTAACCCTC
260 ATGCGCAAGTCGGGGACCAGCCCGGTCCCCCATTGCGTACTATCGATCCTACTGCCACAACCCTC
* *
15540419 GATCCGATCTGATCTTAGACTGGAAATGAACTTCGTATGCCTAAATCAACCCACGAAATGAGCGT
325 GATCCGATCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGT
* ** * * ** *
15540484 -TCGGGCACTGAGCCGATTGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTA
390 GT-GGGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCAACCCAATCCCCCTCAA
* * * * *
15540548 CATGCTGTCGGTGCCACTGCCACAACCCTCAGTTTGGCTGGGGCTTAGACGTGGAATGAACTCTA
454 CATGCTATAGGTCCCACTGCCACAACCCTCAGTTTGGCTGGGGCTTAGACATGGAATGAACTCCA
** * ** * * *
15540613 TATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAGCCGGCCGAAGAGGAAGAATACGC
519 TATGCCTAAGCCAAAACATGAAACGAGCGTGCGGGCACTCAACAGACCGAAGAGGAAGAATACGC
* ** *
15540678 AAGCCGGGGATCAGCTTGGTCCCCCCCTGCATGCTGCCATTCCTGCTGCTGGTCCTACTGCCG
584 AAGCCAGGGATCAGCACGGT-CCCCCCTGCATGCTGCCAATCCTGCTGCTGGTCCTACTGCCG
*
15540741 CAACCCTCG-TTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCATGA
1 CAACCCTCGTTTC-GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
** *
15540805 AACGAGTG-TGCGGGCACTCAACCGGCC-GAAGAGGCAGAATGCGCAAG-TCGGGGA-TTACCCC
65 AAC-AG-GATGCGGGCACTCAACCGGCCAG-AGAGGCAGAATGCGCAAGCT-GGGGACCGACCCA
** * * * * *
15540866 GGCCCCCCTTTGTGCGTTGCCGATCCTGCTGCCACAACCTTCGATCCTGCT-GGGGCTTAGACAT
126 GGCCCCCCTACGTGC--TGCCGATCCTACTACCACAACCCTCGAT-CTGCTCCGAGCTTAGA-AT
* ** *
15540930 -GGAATGAACTCCCTATGCCTAAGC-CAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGA-CAG
187 GGGAATGAACTCCCTATGCCTAA-CTCAACCCACAAAATGAACGTACGGGCGCTCAGCCGATC-G
* * * *
15540992 GAGAGGGAGAATGCGTAAGTCGGGGACCAGCCCGGTCCCCCCTTGCGTACTATCGATCCTGCTGC
250 GAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCGGTCCCCCATTGCGTACTATCGATCCTACTGC
* * * * * *
15541057 CACAACTCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
315 CACAACCCTCGATCCGATCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAATCAACCCACG
** * ***
15541122 AAACGAGCGTGTGGGTGCTGAGCCAACCGAAGAGGCATAATGCGTAAGCCAGGGATTGGCCCAAT
380 AAACGAGCGTGTGGGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCAACCCAAT
* * *
15541187 CCCCCTCAACGTGCTATAGGTCCCGCTGCCACAACCCTCAGTTTGGTTGGGGCTTAGACATGGAA
445 CCCCCTCAACATGCTATAGGTCCCACTGCCACAACCCTCAGTTTGGCTGGGGCTTAGACATGGAA
* * * * *
15541252 TGAACTCCATATGCCTAAGCCAAAAGATGAAACGGGCGTGTGGGCACTCAACAGACCGGAGAGGC
510 TGAACTCCATATGCCTAAGCCAAAACATGAAACGAGCGTGCGGGCACTCAACAGACCGAAGAGGA
* * *
15541317 AGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCCTGCGTGCTGCCAATCCTGCTGC
575 AGAATACGCAAGCCAGGGATCAGCACGGTCCCCCCTGCATGCTGCCAATCCTGCTGC
15541374 CACAACCTTC
Statistics
Matches: 527, Mismatches: 94, Indels: 24
0.82 0.15 0.04
Matches are distributed among these distances:
646 20 0.04
647 125 0.24
648 374 0.71
649 8 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (645 bp):
CAACCCTCGTTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
ACAGGATGCGGGCACTCAACCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGACCGACCCAGGCCC
CCCTACGTGCTGCCGATCCTACTACCACAACCCTCGATCTGCTCCGAGCTTAGAATGGGAATGAA
CTCCCTATGCCTAACTCAACCCACAAAATGAACGTACGGGCGCTCAGCCGATCGGAGAGGCAGAA
TGCGCAAGTCGGGGACCAGCCCGGTCCCCCATTGCGTACTATCGATCCTACTGCCACAACCCTCG
ATCCGATCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTG
TGGGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCAACCCAATCCCCCTCAACA
TGCTATAGGTCCCACTGCCACAACCCTCAGTTTGGCTGGGGCTTAGACATGGAATGAACTCCATA
TGCCTAAGCCAAAACATGAAACGAGCGTGCGGGCACTCAACAGACCGAAGAGGAAGAATACGCAA
GCCAGGGATCAGCACGGTCCCCCCTGCATGCTGCCAATCCTGCTGCTGGTCCTACTGCCG
Found at i:15541257 original size:318 final size:316
Alignment explanation
Indices: 15539956--15541423 Score: 1045
Period size: 318 Copynumber: 4.6 Consensus size: 316
15539946 TCGGTCCGAT
* * * * * * * *
15539956 CTTAGAC-TGAGAATGAGCTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCGGGTGCTAAG
1 CTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * * *
15540020 CCGGTCGGAGATGCATAATGCGCAAGCTGGGGATCGGCCCGAT-CCCCCTCTGCGTGCTATCAGT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCCT-TGCGTGCTGTC-GA
* * * * * * ** * *
15540084 TCC-ACTACCTCAACCCTCGTTTCG-GCTGGGGCTTAGACAT-GGAATGAACTCCTTATTCCTAA
128 TCCTACTGCCACAACCCTCGATCCGATCTCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* * * * * * * * * *
15540146 GCCAACCCATGAAAC-AGGCATGCGGGCGCTCAGCCGGCC-AGAGAGGTAGAATGCGCAAGCTGG
192 GTCAACCCACGAAACGA-GCGTGTGGGCACTGAGCCGACCGA-AGAGGCATAATGCGCAAGCCGG
*** * ** * * * * * *
15540209 GGACCGGCCCAGTCCCCC-CTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGG-TCCGA
255 GGA-TTACCCAGTCCCCCTCTACGTGCT-T-GGTCCCGCTGCCACAACCCTCAGTTTGGCT-GGG
*
15540272 T
316 G
* * * * * * * *
15540273 CTTAGA-TTGGGAATGAACTTCGTATGCCTAA-CTCAACCCATAAAATGAACGTACGGGTGCTCA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
15540336 GCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCTGGTCTCCCATTGGGTGCTGTCGAT
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCCTTGCGTGCTGTCGAT
** * * *
15540401 CCTACTGCCGTAACCCTCGATCCGATCT-GATCTTAGACTGGAAATGAACTTCGTATGCCTAAAT
129 CCTACTGCCACAACCCTCGATCCGATCTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** *
15540465 CAACCCACGAAATGAGCGT-TCGGGCACTGAGCCGATTGGAGAGGCATAATGCGCAAGCCGGGGA
194 CAACCCACGAAACGAGCGTGT-GGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGA
* * * * *
15540529 TCAACCCGGTCCCCCTCTACATGCTGTCGGTGCCACTGCCACAACCCTCAGTTTGGCTGGGG
258 T-TACCCAGTCCCCCTCTACGTGCT-T-GGTCCCGCTGCCACAACCCTCAGTTTGGCTGGGG
* * * *
15540591 CTTAGACGTGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** *
15540656 CGGCCGAAGAGGAAGAATACGCAAGCCGGGGATCAGCTTGGTCCCCCCCTGCATGCTGCCATTCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGT-CCCCCCT---TGC-G----TGC
* * * * * **
15540721 TGCTGCTGGTCCTACTGCCGCAACCCTCGTTCTGA-CTGGGGCTTAGACAT-GGAATGAACTCCG
122 TG-T-C-GATCCTACTGCCACAACCCTCGATCCGATCTCGATCTTAGAC-TGGGAATGAACTCCG
* * * * * * *
15540784 TATGCCTAAG-CGAACCCATGAAACGAGTGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGCG
183 TATGCCTAAGTC-AACCCACGAAACGAGCGTGTGGGCACTGAGCCGACCGAAGAGGCATAATGCG
* * * ** * *
15540848 CAAGTCGGGGATTACCCCGGCCCCC-CTTTGTGCGTTGCCGATCCTGCTGCCACAACCTTC-GAT
247 CAAGCCGGGGATTACCCAGTCCCCCTCTACGTGC-TTG--G-TCCCGCTGCCACAACCCTCAG-T
*
15540911 CCT-GCTGGGG
307 -TTGGCTGGGG
* * * *
15540921 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15540986 CGACAGGAGAGGGAGAATGCGTAAGTCGGGGACCAGCCCGGTCCCCCCTTGCGTACTATCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCCTTGCGTGCTGTCGATCC
* * * * *
15541051 TGCTGCCACAACTCTCGGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
131 TACTGCCACAACCCTCGATCCGATCTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * *
15541115 ACCCACGAAACGAGCGTGTGGGTGCTGAGCCAACCGAAGAGGCATAATGCGTAAGCCAGGGATTG
196 ACCCACGAAACGAGCGTGTGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATT-
* * * *
15541180 GCCCAATCCCCCTCAACGTGCTATAGGTCCCGCTGCCACAACCCTCAGTTTGGTTGGGG
260 ACCCAGTCCCCCTCTACGTGCT-T-GGTCCCGCTGCCACAACCCTCAGTTTGGCTGGGG
*** * * * *
15541239 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAAAAGATGAAACGGGCGTGTGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
15541304 AGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCC-TGCGTGCTGCCAATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCCTTGCGTGCTGTCGATCC
* * *
15541368 TGCTGCCACAACCTTCGATCCGAT-TCAATCTTAGACTGGGAATGAACTCCGTATGC
131 TACTGCCACAACCCTCGATCCGATCTCGATCTTAGACTGGGAATGAACTCCGTATGC
15541424 TTAGACTGGG
Statistics
Matches: 905, Mismatches: 199, Indels: 94
0.76 0.17 0.08
Matches are distributed among these distances:
316 6 0.01
317 256 0.28
318 349 0.39
319 23 0.03
320 7 0.01
321 4 0.00
322 2 0.00
323 1 0.00
325 1 0.00
326 3 0.00
327 5 0.01
328 7 0.01
329 24 0.03
330 215 0.24
331 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCCTTGCGTGCTGTCGATCC
TACTGCCACAACCCTCGATCCGATCTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGTGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATTA
CCCAGTCCCCCTCTACGTGCTTGGTCCCGCTGCCACAACCCTCAGTTTGGCTGGGG
Found at i:15541426 original size:26 final size:26
Alignment explanation
Indices: 15541397--15541449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15541387 CCGATTCAAT
15541397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15541423 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15541449 C
1 C
15541450 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15541720 original size:159 final size:159
Alignment explanation
Indices: 15541555--15541849 Score: 364
Period size: 159 Copynumber: 1.9 Consensus size: 159
15541545 GTTGGTCCTG
* * *
15541555 CTGCCACAACCCTCGGTCCAGTC-CGATCTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGTCA
1 CTGCCACAACCCTCGGT-CAGACTCGAGCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCA
* * * *
15541617 ACCCATGAAACGAGCGTGCAGGCGCTGAGCCGG-CCGAAGAGGCATAATACACAAGCTGGGGATC
63 ACCCATGAAACGAGCATACAGGCGCTCAGCCGGTCCGAA-AGGCAGAATACACAAGCTGGGGATC
15541681 GACCCGATCCCCCTCTATATGCTGCCAGTCCCA
127 GACCCGATCCCCCTCTATATGCTGCCAGTCCCA
* * * *
15541714 CTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCATCC
1 CTGCCACAACCCTCGGTCAGACTCGAGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACC
* * * ** * *
15541779 CATGAAACGAGCATACGGGCGCTCAGCCGGTCGGAAAGGCAGAATGCGTAAGCTGGGGATTGGCC
66 CATGAAACGAGCATACAGGCGCTCAGCCGGTCCGAAAGGCAGAATACACAAGCTGGGGATCGACC
15541844 CGATCC
131 CGATCC
15541850 TCCATGCATG
Statistics
Matches: 114, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
158 3 0.03
159 104 0.91
160 7 0.06
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
CTGCCACAACCCTCGGTCAGACTCGAGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACC
CATGAAACGAGCATACAGGCGCTCAGCCGGTCCGAAAGGCAGAATACACAAGCTGGGGATCGACC
CGATCCCCCTCTATATGCTGCCAGTCCCA
Found at i:15541876 original size:502 final size:501
Alignment explanation
Indices: 15541048--15542001 Score: 1160
Period size: 502 Copynumber: 1.9 Consensus size: 501
15541038 GTACTATCGA
* * * *
15541048 TCCTGCTGCCACAACTCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * **
15541113 CAACCCACGAAACGAGCGTGTGGGTGCTGAGCCAACCGAAGAGGCATAATGCGTAAGCCAGGGAT
66 CAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAACCGAAGAGGCATAATACACAAGCCAGGGAT
* * * * * * **
15541178 TGGCCCAATCCCCCTCAACGTGCTATAGGTCCCGCTGCCACAACCCTCAGTTTGGTTGGGGCTTA
131 CGACCCAATCCCCCTCAACATGCTACAGGTCCCACTGCCACAACCCTCAGTCTGACTGGGGCTTA
* * * **
15541243 GACATGGAATGAACTCCATATGCCTAAGCCAAAAGATGAAACGGGCGTGTGGGCACTCAACAGAC
196 GACATGGAATGAACTCCATATGCCTAAGCCAAAACATGAAACGAGCATACGGGCACTCAACAGAC
* * * *
15541308 CGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCACGGTCCCCCCTGCGTGCTGCCAATCCTGCTG
261 CGGAAAGGCAGAATGCGCAAGCCAGGGATCGGCACGATCCCCCATGCATGCTGCCAATCCTGCTG
* * **
15541373 CCACAACCTTCGATCCGAT-TCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
326 CCACAACCCTCGATCCGGTCT-AATCTTAGACTCAGAATGAACTCCGTATGCTTAGACT-GGGAT
* * * **
15541437 GAACT-TCGTATGCCTAAGTCAAACCATGAAACGAGCGTGGGGGTGCTCAGTCGACCAGAGAGGT
389 GAACTCT-ATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGACGCTCAGTCGACCAGAGAGGT
15541501 CGATTGGAGAGGCAAAATACGTAGAATGCGTTGTCGATCCTACTGTTGG
453 CGATTGGAGAGGCAAAATACGTAGAATGCGTTGTCGATCCTACTGTTGG
*
15541550 TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
1 TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** **
15541615 CAACCCATGAAACGAGCGTGCAGGCGCTGAGCCGGCCGAAGAGGCATAATACACAAGCTGGGGAT
66 CAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAACCGAAGAGGCATAATACACAAGCCAGGGAT
* * * * *
15541680 CGACCCGATCCCCCTCTATATGCTGCCA-GTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTT
131 CGACCCAATCCCCCTCAACATGCT-ACAGGTCCCACTGCCACAACCCTCAGTCTGACTGGGGCTT
*** * * *
15541744 AGACATGGAATGAACTCTC-TATGCCTAAGCCATCCCATGAAACGAGCATACGGGCGCTCAGCCG
195 AGACATGGAATGAACTC-CATATGCCTAAGCCAAAACATGAAACGAGCATACGGGCACTCAACAG
** * ** * * * * * *
15541808 GTCGGAAAGGCAGAATGCGTAAGCTGGGGATTGGCCCGATCCTCCATGCATGCTGTCGATCTTGC
259 ACCGGAAAGGCAGAATGCGCAAGCCAGGGATCGGCACGATCCCCCATGCATGCTGCCAATCCTGC
* * * **
15541873 TGCCGCAACCCTCGATCCGGTCTGATCTTAGATTCAGAATGAACTTTGTATGCTTAGACTGGGAT
324 TGCCACAACCCTCGATCCGGTCTAATCTTAGACTCAGAATGAACTCCGTATGCTTAGACTGGGAT
* * * * * *
15541938 GAACTCTATATGCCTATGTTAACCCACGATATGAGCGTGCGGACGCTCAGTCGGCCAGAGAGGT
389 GAACTCTATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGACGCTCAGTCGACCAGAGAGGT
15542002 AGGATGCGCA
Statistics
Matches: 373, Mismatches: 75, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
501 56 0.15
502 314 0.84
503 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (501 bp):
TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAACCGAAGAGGCATAATACACAAGCCAGGGAT
CGACCCAATCCCCCTCAACATGCTACAGGTCCCACTGCCACAACCCTCAGTCTGACTGGGGCTTA
GACATGGAATGAACTCCATATGCCTAAGCCAAAACATGAAACGAGCATACGGGCACTCAACAGAC
CGGAAAGGCAGAATGCGCAAGCCAGGGATCGGCACGATCCCCCATGCATGCTGCCAATCCTGCTG
CCACAACCCTCGATCCGGTCTAATCTTAGACTCAGAATGAACTCCGTATGCTTAGACTGGGATGA
ACTCTATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGACGCTCAGTCGACCAGAGAGGTCGA
TTGGAGAGGCAAAATACGTAGAATGCGTTGTCGATCCTACTGTTGG
Found at i:15542650 original size:26 final size:26
Alignment explanation
Indices: 15542612--15542664 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15542602 GGCTCAAACT
15542612 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15542638 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15542664 C
1 C
15542665 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15545446 original size:26 final size:26
Alignment explanation
Indices: 15545406--15545458 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15545396 GGCTCAAACT
* *
15545406 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAAATCCATATG
15545432 CTTAGACATGG-AATGAAATCCATATG
1 CTTAGAC-TGGAAATGAAATCCATATG
15545458 C
1 C
15545459 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAAATCCATATG
Found at i:15546156 original size:26 final size:26
Alignment explanation
Indices: 15546127--15546178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15546117 TCAGTCCGAT
15546127 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15546153 CTTAGACATGGAATGAAGTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15546179 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15546669 original size:26 final size:26
Alignment explanation
Indices: 15546629--15546679 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15546619 CAGTCCGATC
15546629 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
*
15546655 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCTGTATG
15546680 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGG
Found at i:15547519 original size:159 final size:158
Alignment explanation
Indices: 15547143--15547505 Score: 419
Period size: 158 Copynumber: 2.3 Consensus size: 158
15547133 AACTCTGTAT
* *
15547143 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTTAG
** * *
15547208 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGGTCCCCCCTACGTGCTGTCAATCC
66 CCGGAGGGAGAGGCAGAATGCGCAAGCCGGGGACAGACTCGGTCCCCCCTACGTGCTATCAATCC
* * * * *
15547273 TGCTGCCGCAACCTTTGATCCGATCTGA
131 CGATGCCACAACCCTCGATCCGATCTGA
* * * * *
15547301 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCG-TTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTT-
* * * * *
15547364 AGCTGGAGGGAGAGGCATAATGCGCAAGTCGGGGATCAG-TTCGGTCCCCCTCTACGTGCTATCG
64 AGCCGGAGGGAGAGGCAGAATGCGCAAGCCGGGGA-CAGACTCGGTCCCCC-CTACGTGCTATCA
* * *
15547428 ATCCCGATGCCACAACCCTCGGTCCGGT-TAGG
127 ATCCCGATGCCACAACCCTCGATCCGATCT-GA
* *
15547460 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
15547506 CAGGCGTGCG
Statistics
Matches: 169, Mismatches: 30, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 92 0.54
159 73 0.43
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTTAG
CCGGAGGGAGAGGCAGAATGCGCAAGCCGGGGACAGACTCGGTCCCCCCTACGTGCTATCAATCC
CGATGCCACAACCCTCGATCCGATCTGA
Found at i:15547669 original size:26 final size:26
Alignment explanation
Indices: 15547619--15547671 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15547609 CTGGTCCGAT
**
15547619 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15547645 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15547671 C
1 C
15547672 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15547924 original size:196 final size:196
Alignment explanation
Indices: 15547590--15547961 Score: 528
Period size: 196 Copynumber: 1.9 Consensus size: 196
15547580 CTGTCGATCT
* **
15547590 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACATG
1 TGCTACCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG
* * * * * **
15547655 GAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGTGGGTGGGTGCTCAACCGGTTGGAGA
66 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGGTGCTCAACCGATCAGAGA
* * ** * *
15547720 GGCAGAATGCGCAAGTCAGGGATCGGCTCGATCCCCCCTACGTGCTGTTGATCTTACTACTGGTC
131 GGCAGAATGCACAAGCCAGGGATCAACCCGATCCCCCCTACCTGCTGTTGATCTTACTACTGGTC
15547785 C
196 C
* *
15547786 TGCTACCACAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATG
1 TGCTACCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG
* * **
15547851 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAGTCGATCAGAGA
66 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGGTGCTCAACCGATCAGAGA
* *
15547916 GGCAGAATGCATAAGCCGGGGATCAACCCGATCCCCCCTACCTGCT
131 GGCAGAATGCACAAGCCAGGGATCAACCCGATCCCCCCTACCTGCT
15547962 ATCGATTCTA
Statistics
Matches: 152, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
196 152 1.00
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (196 bp):
TGCTACCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGGTGCTCAACCGATCAGAGA
GGCAGAATGCACAAGCCAGGGATCAACCCGATCCCCCCTACCTGCTGTTGATCTTACTACTGGTC
C
Found at i:15548344 original size:26 final size:26
Alignment explanation
Indices: 15548315--15548367 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15548305 CCGGTCTGAT
15548315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15548341 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15548367 C
1 C
15548368 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15549344 original size:26 final size:26
Alignment explanation
Indices: 15549308--15549360 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15549298 CCGATTTGAT
*
15549308 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15549334 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15549360 C
1 C
15549361 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15550893 original size:26 final size:26
Alignment explanation
Indices: 15550855--15550907 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15550845 GGCTCAAACT
15550855 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15550881 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15550907 C
1 C
15550908 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15551235 original size:26 final size:26
Alignment explanation
Indices: 15551199--15551248 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15551189 CCGGTTCGAT
15551199 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15551225 CTTAGACTGGGAATGAACTCCATA
1 CTTAGACTGGGAATGAACTCCATA
15551249 AGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15551424 original size:26 final size:26
Alignment explanation
Indices: 15551395--15551447 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15551385 CCGGTCCGAT
15551395 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15551421 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15551447 C
1 C
15551448 CCAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15551525 original size:196 final size:195
Alignment explanation
Indices: 15551188--15551544 Score: 468
Period size: 196 Copynumber: 1.8 Consensus size: 195
15551178 CAACCCTTGA
*
15551188 TCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATAAGCC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATAAGCC
* * * * ** * *
15551253 TAAGTCAACCCATGAAACGAGCGTGTGGGTGCTTAGCCAGTCGAAGAGGTAGAATGCGTAAGCCG
66 CAAGCCAACCAACGAAACGAGCGTACGGGCGCTTAGCCAGTCGAAGAGGCAGAA-GCGTAAGCCG
* *
15551318 AGGATCGACCCGATCCCC-CCTGTGTGCTGTAGATCCTGCTGCAGGTCCTGCTACCGCAACCCCA
130 AGGACCGACCCG-GCCCCTCCTGTGTGCTGTAGATCCTGCTGCAGGTCCTGCTACCGCAACCCCA
15551382 TG
194 TG
* * *
15551384 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCATAAGC
** * *
15551448 CCAAGCCAACCAACGAAACGAGCGTACGGGCGCTTAGCTGGTCGGAGAGGCAGAA-CGTAAAAGT
65 CCAAGCCAACCAACGAAACGAGCGTACGGGCGCTTAGCCAGTCGAAGAGGCAGAAGCGT--AAGC
*
15551512 CGGGGACCGACCCGGCCCCTTCCTGTGTGCTGT
128 CGAGGACCGACCCGGCCCC-TCCTGTGTGCTGT
15551545 CAATCTGGCT
Statistics
Matches: 137, Mismatches: 19, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
194 3 0.02
195 4 0.03
196 117 0.85
197 13 0.09
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (195 bp):
TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATAAGCC
CAAGCCAACCAACGAAACGAGCGTACGGGCGCTTAGCCAGTCGAAGAGGCAGAAGCGTAAGCCGA
GGACCGACCCGGCCCCTCCTGTGTGCTGTAGATCCTGCTGCAGGTCCTGCTACCGCAACCCCATG
Found at i:15551937 original size:26 final size:26
Alignment explanation
Indices: 15551896--15551948 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15551886 CCAGTTCGAT
15551896 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15551922 CTTAGACTTGGG-ATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15551948 C
1 C
15551949 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15552780 original size:158 final size:158
Alignment explanation
Indices: 15552302--15552794 Score: 451
Period size: 158 Copynumber: 3.1 Consensus size: 158
15552292 ACTCTATATG
* * *
15552302 CTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA-A
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAGA
* * * *
15552366 CTAGCCGGATAGGTAGAATGCGTAAATCGGGGATAGGCCCGATCCCCCCTACGTGCTATCGATCC
66 C-GGCCGGAGAGGTAAAATGCGTAAACCGGGGATAGGCCCGATCCCCCCTACGTGCTATCGATCC
* * * **
15552431 TGCTACCGCAACCCTCGGT-TCGATCCCAT
130 TGCTGCCGCAACCCTCAGTCT-GGTCTGAT
* * * * * *
15552460 CTTAGAC-TAGGAATGAACACCGCT-TGCCTAAGTCAAGCCACAAAATGAACGTGCGGGCGTTGA
1 CTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCA
* * * * * * * * *
15552523 GCCGGCCGGAGTGGCATAATGCGCAAACCGAGGATTGGCCC-ATCCCCCTCTACGTGCTACCGGT
64 GACGGCCGGAGAGGTAAAATGCGTAAACCGGGGATAGGCCCGATCCCCC-CTACGTGCTATCGAT
* * **
15552587 CCCGCTGCCACAACCCTCAGTCTGG-CTGGGG
128 CCTGCTGCCGCAACCCTCAGTCTGGTCT-GAT
* * ** * *
15552618 CTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAGA
* * * * * *
15552683 CGGCCAGAGAGGTAAAATGCGTAAGCCGGGGATCGACCCGGTCGCCCCTACGTGCTATCGATCCT
66 CGGCCGGAGAGGTAAAATGCGTAAACCGGGGATAGGCCCGATCCCCCCTACGTGCTATCGATCCT
* **
15552748 GCTGCCGTAACCCTTTGTCTGGTCTGAT
131 GCTGCCGCAACCCTCAGTCTGGTCTGAT
*
15552776 CTTAGA-TTGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
15552795 TCATACGCTT
Statistics
Matches: 260, Mismatches: 64, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 12 0.05
158 237 0.91
159 11 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAGA
CGGCCGGAGAGGTAAAATGCGTAAACCGGGGATAGGCCCGATCCCCCCTACGTGCTATCGATCCT
GCTGCCGCAACCCTCAGTCTGGTCTGAT
Found at i:15554551 original size:161 final size:161
Alignment explanation
Indices: 15554245--15554599 Score: 425
Period size: 161 Copynumber: 2.2 Consensus size: 161
15554235 TCAATCCAAT
* **
15554245 CTTAGAC-TAGGAATGAACTCCGTATGCG-TAAGTCAACCCATGAAACAAGCGTTCGGGTGTTAA
1 CTTAGACAT-GGAATGAACTCCGTATGCGCTAAGCCAACCCATGAAACAAGCGTTCGGGCATTAA
* * * * *
15554308 GCCGACCGGAGAGGGCATAATGAGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGAGCTACCGA
65 GCCGACCGAAGAGGGCAGAATGAGCAAGCCGAGGATCAGCCCGACCCCCCTCTGCGAGCTACCGA
*
15554373 TCCCGCTGCCACAACCCTCAGACCGGCTGGGG
130 TCCCGCTGCCACAACCCTCAGACCGACTGGGG
* * *
15554405 CTTAGACATGGAATGAACTACGTATGCGCATAAGCCAACCCATGAAACGAGCGTAT-GGGCATTC
1 CTTAGACATGGAATGAACTCCGTATGCGC-TAAGCCAACCCATGAAACAAGCGT-TCGGGCATTA
* * * ** * **
15554469 AGCTGACCGAAGA-GGCAGAATGCGCAAGCCGAGGATCGGTTCGGCCCCCCTCTGC-ATGCTGTC
64 AGCCGACCGAAGAGGGCAGAATGAGCAAGCCGAGGATCAGCCCGACCCCCCTCTGCGA-GCTACC
* *
15554532 GATCCCGCTGCCACAACCCTCGGTCCGACTGGGG
128 GATCCCGCTGCCACAACCCTCAGACCGACTGGGG
*
15554566 CTTAGACATGGAATGAACTCCCTATGC-CTAAGCC
1 CTTAGACATGGAATGAACTCCGTATGCGCTAAGCC
15554600 TAAGCCAACC
Statistics
Matches: 166, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
159 6 0.04
160 27 0.16
161 94 0.57
162 38 0.23
163 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (161 bp):
CTTAGACATGGAATGAACTCCGTATGCGCTAAGCCAACCCATGAAACAAGCGTTCGGGCATTAAG
CCGACCGAAGAGGGCAGAATGAGCAAGCCGAGGATCAGCCCGACCCCCCTCTGCGAGCTACCGAT
CCCGCTGCCACAACCCTCAGACCGACTGGGG
Found at i:15554771 original size:26 final size:26
Alignment explanation
Indices: 15554730--15554782 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15554720 TCGGTTCGAT
15554730 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
15554756 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
15554782 C
1 C
15554783 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15555301 original size:159 final size:158
Alignment explanation
Indices: 15554967--15555466 Score: 510
Period size: 159 Copynumber: 3.2 Consensus size: 158
15554957 TCCATATGCG
* *
15554967 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGATC
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-TC
** * * * *
15555032 GATC-AGAGAGGCAGAAT--GTAAGTCAGGGACCAACCTGGTCCCACCCAT-CGTGCTGTCGATC
65 GGCCGA-AGAGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCC-CCC-TGCGTGCTATCGATC
* * * * *
15555093 CTGCTATCGCAACCCTCGGTTCGATCTGATCT
127 CCGCTACCACAACCCTCAGTTCGATCTGAGCT
* * *
15555125 TAGAC-TGGAAATTAACTCCATATGCCTAAGCCAACCCACGAAGCGAGCGTGCGGGTGCTCAGTC
1 TAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
*
15555189 GGCCGAAGAGGTAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGATCCC
65 GGCCGAAGAGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCC-CTGCGTGCTATCGATCCC
* * * *
15555254 GCTGCCACAACTCTCAGTTGGA-CTGGGGCT
129 GCTACCACAACCCTCAGTTCGATCT-GAGCT
* * * * *
15555284 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGTGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * * *
15555349 GCCGGAGAGGCAGAATGCGTATGCCAGGGATCGTCTCGATCCCCCCTGCGTGCTATCGATCCTGC
66 GCCGAAGAGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCCGC
* * * * * * *
15555414 TATCGCAGCCCTTAGTCCGGTCTGATCT
131 TACCACAACCCTCAGTTCGATCTGAGCT
*
15555442 TAGAC-TGGGAATGCACTCCATATGC
1 TAGACAT-GGAATGAACTCCATATGC
15555467 TTAGACAAGG
Statistics
Matches: 282, Mismatches: 50, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
157 18 0.06
158 113 0.40
159 148 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
GCCGAAGAGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCCGC
TACCACAACCCTCAGTTCGATCTGAGCT
Found at i:15557366 original size:156 final size:158
Alignment explanation
Indices: 15557065--15557373 Score: 349
Period size: 156 Copynumber: 2.0 Consensus size: 158
15557055 AACTTCGTAT
* *
15557065 GCTTCGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
15557130 CCGATCGAAGAGGTAGAATGCGCAAGCTGAGATCGGCCTGGTCCCCCTTAGCATGCTACCGATCC
66 CCGATCGAAGAGGCAGAATGCACAAGCAGAGATCAGCCCGGTCCCCCCTAGCATCCTACCGATCC
15557195 CACTGCCACAACCCTCGATCCGACTGGG
131 CACTGCCACAACCCTCGATCCGACTGGG
* *
15557223 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCC-ACCCATC-AAACGGGCGTGCGGGCGCT-T
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCGCTCA
** * * * * * *
15557285 GTTG-GCTGGAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGGTCCCCCCT-GCGTCCTATCGA
65 GCCGATC-GAAGAGGCAGAATGCACAAG-CAGAGATCAGCCCGGTCCCCCCTAGCATCCTACCGA
** * *
15557348 TCCTGCTGCCCCAACCCTCGGTCCGA
128 TCCCACTGCCACAACCCTCGATCCGA
15557374 TTCAATCTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
155 1 0.01
156 50 0.40
157 40 0.32
158 34 0.27
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCACAAGCAGAGATCAGCCCGGTCCCCCCTAGCATCCTACCGATCC
CACTGCCACAACCCTCGATCCGACTGGG
Found at i:15557409 original size:26 final size:26
Alignment explanation
Indices: 15557380--15557432 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15557370 CCGATTCAAT
15557380 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15557406 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15557432 C
1 C
15557433 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15557578 original size:185 final size:184
Alignment explanation
Indices: 15557223--15557777 Score: 519
Period size: 185 Copynumber: 3.0 Consensus size: 184
15557213 TCCGACTGGG
* *** * *
15557223 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCC-ACCCATC-AAACGGGCGTGCGGGCGCT-T
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACAAACGTACGGGCGCTCA
** * * *
15557285 GTTGG-CTGGAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGGTCCCCCCTGCGTCCTATCGAT
65 GCCGGTC-GGAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCACCCCTGCGTCCTACCGAT
* * *
15557349 CCTGCTGCCCCAACCCTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTAT
129 CCTACTGCCCCAACCCTCAGTCCGATTCAATCTCAGACTGGGAATGAACTCCGTAT
* *
15557405 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAACGTACGGGCGCTCA
** * * * *
15557469 GCCGGTCGGAGAGGCAGAATGTGCAAGCTAGGGATTGGCCTGATCAACCCCTGCGTGCTACCGAT
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATC-ACCCCTGCGTCCTACCGAT
* * * * * *
15557534 CCTACTGCCGCAACCCTCAGTCTG-GTCTGATCTCAGATTGGGAATGATCTCCGTAT
129 CCTACTGCCCCAACCCTCAGTCCGATTC-AATCTCAGACTGGGAATGAACTCCGTAT
* * * * *
15557590 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAACGTACGGGCGCTCAG
* * * * * * * * * ** *
15557655 TCGGTCCGATGAGGCAGAATGCACAAGTCGGGGACTGGCCCGATCCCCCCTCACGTACTGTCAAT
66 CCGGTCGGA-GAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCACCCCT-GCGTCCTACCGAT
* * ** ** * * *
15557720 CTTGCTGCTGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAACGAACTCCGTAT
129 CCTACTGCCCCAACCCTCAGTCCGATTCAATCTCAGACTGGGAATGAACTCCGTAT
15557776 GC
1 GC
15557778 CTAAGTAAAC
Statistics
Matches: 299, Mismatches: 63, Indels: 18
0.79 0.17 0.05
Matches are distributed among these distances:
181 1 0.00
182 31 0.10
183 20 0.07
184 37 0.12
185 129 0.43
186 80 0.27
187 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAACGTACGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCACCCCTGCGTCCTACCGATCC
TACTGCCCCAACCCTCAGTCCGATTCAATCTCAGACTGGGAATGAACTCCGTAT
Found at i:15558119 original size:26 final size:26
Alignment explanation
Indices: 15558068--15558120 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15558058 CTGGTCTGAT
**
15558068 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
15558094 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15558120 C
1 C
15558121 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15558307 original size:26 final size:26
Alignment explanation
Indices: 15558278--15558330 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15558268 CTGATCCGAT
15558278 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15558304 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15558330 C
1 C
15558331 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15558678 original size:159 final size:156
Alignment explanation
Indices: 15558303--15558805 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 156
15558293 AACTCCGTAT
* * *
15558303 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
15558368 CCGGCTGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGATCCCCCCTGCATGCTATCGATTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCT-TCCAGTC
*
15558433 TGCTGCCACAACCCTCGGTCTGGTCCGA
129 TGCTGCCACAACCCTCGGTCCGGTCCGA
* * * * * *
15558461 TCTTGGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
15558525 GCCGACCGGAGAGGCATAATGCGCAAGCAGGGGATTGGCTCGATCCCCCTCTACGTGCTTCCAGT
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCC-CTGCGTGCTTCCAGT
* ** *
15558590 CTCGCTGCCACAACCCTCTGTCCGGTTGGG
128 CT-GCTGCCACAACCCTCGGTCCGGTCCGA
* ** * * *
15558620 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCGAACCCACGAAACGGGAGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * * *
15558685 CCGGTCGGAGAGTTAGAATGCGCAAGCTGGGGATCGGCCCGATCTCCCCTGCGTGCTACC-GATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTTCCAG-TC
* * * *
15558749 TTGCTGCCGCAACCCTCAGTCTGGTCTGA
129 -TGCTGCCACAACCCTCGGTCCGGTCCGA
*
15558778 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
15558806 TTAGACTAGA
Statistics
Matches: 280, Mismatches: 57, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 158 0.56
159 118 0.42
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTTCCAGTCTG
CTGCCACAACCCTCGGTCCGGTCCGA
Found at i:15559205 original size:26 final size:26
Alignment explanation
Indices: 15559167--15559219 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15559157 CTGGTCTGAT
15559167 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15559193 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15559219 C
1 C
15559220 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15559446 original size:26 final size:26
Alignment explanation
Indices: 15559408--15559460 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15559398 GGCTCAAAAT
*
15559408 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15559434 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
15559460 C
1 C
15559461 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15561074 original size:159 final size:158
Alignment explanation
Indices: 15560772--15561223 Score: 545
Period size: 159 Copynumber: 2.8 Consensus size: 158
15560762 AACTCCGTAT
* *
15560772 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
15560837 CCGACCGGAGAGGCAGAATGTGCAAGC-CGGGGATCGGCCTGGTCCCCCCTTACATGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGTGCAA-CTCGGGGATCGGCCCGGTCCCCCC-TGCATGCTGTCGAT
* **
15560901 CCTGCTGCTGCAACCCTT-GGTCCGA-TCCAA
129 CCTGCTACCACAA-CCTTCGGTCCGACT-CAA
* * * *
15560931 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
15560995 GCCGACCGGAGAGGCATAATGCGCAACTCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGGT
65 GCCGACCGGAGAGGCAGAATGTGCAACTCGGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCGAT
***
15561060 CCTGCTACCACAACCTTCGGTCCGACTGGG
129 CCTGCTACCACAACCTTCGGTCCGACTCAA
* * * *
15561090 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAATTG-GCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCGCTCA
* * * * * *
15561154 GCCGGCCGTAGAGGTAGAATATGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATC
65 GCCGACCGGAGAGGCAGAATGTGCAACTCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATC
15561219 CTGCT
130 CTGCT
15561224 GTCGTAACCC
Statistics
Matches: 248, Mismatches: 38, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
158 25 0.10
159 219 0.88
160 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGTGCAACTCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
TGCTACCACAACCTTCGGTCCGACTCAA
Found at i:15561278 original size:26 final size:26
Alignment explanation
Indices: 15561249--15561301 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15561239 TCAGTTTGAT
* *
15561249 CTTAGATTGGGAATGAATTTCATATG
1 CTTAGATTGGGAATGAACTCCATATG
*
15561275 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
15561301 C
1 C
15561302 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:15563744 original size:158 final size:155
Alignment explanation
Indices: 15563243--15563746 Score: 453
Period size: 159 Copynumber: 3.2 Consensus size: 155
15563233 ACTCCACATC
* * * *
15563243 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGTGCTCAGTC
1 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCC
** * ** *
15563308 GGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCCTGAGTGCTATCGATCTTG
66 GGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGCCGATCCTG
* * *
15563373 CTACCACAACCCTCGGTCTAGTCTAAT
130 CTGCC-TAACCCTCGGTCTAGTCTGAT
* * * * *
15563400 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACCGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGT-GCGGCGCTCAG
* * * * * * * *
15563464 CTGGCCGAAGAGGCATAATACGCAAGTCGAGGATC-AGCTCGGT-CCACCTTTGCATGCTGCC-A
64 CCGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGTG--TGCTGCCGA
** * * * **
15563526 GTCCCACTGCCTCAACCCTCGGTTTGGAT-GGGG
125 -TCCTGCTGCCT-AACCCTCGGTCTAG-TCTGAT
* *
15563559 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAGC
* * *
15563624 CGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGTGTGTTGCCGATCCT
65 CGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGCCGATCCT
** *
15563689 GCTGCCGTAACCCTCAATCCAGTCTGAT
129 GCTGCC-TAACCCTCGGTCTAGTCTGAT
*
15563717 CTTAGACTAT-GAATGAACTTCGTATGCTTA
1 CTTAGAC-ATGGAATGAACTCCGTATGCTTA
15563747 GACTGGGGAT
Statistics
Matches: 267, Mismatches: 62, Indels: 35
0.73 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 56 0.21
158 88 0.33
159 111 0.42
160 11 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCC
GGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGCCGATCCTGC
TGCCTAACCCTCGGTCTAGTCTGAT
Found at i:15564205 original size:355 final size:354
Alignment explanation
Indices: 15563554--15564220 Score: 822
Period size: 355 Copynumber: 1.9 Consensus size: 354
15563544 TCGGTTTGGA
* ** **
15563554 TGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCAAGCGGGCGC
* * * ** *
15563619 TCAGCCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGTGTGTTGCCG
66 TCAGCCGGACAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGTAGCCG
* * *
15563684 ATCCTGCTGCCGTAACCCTCAATCCAGTCTGATCTTAGACTATGAATGAACTTCGTATGCTTAGA
131 ATCCTGCTGCCGCAACCCTCAATCCAGTATGATCTTAGACTAGGAATGAACTTCGTATGCTTAGA
* * * * *** *
15563749 CTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGATCGTGCGGTTGCTCAGCCGGTCA
196 CTGGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAACCGGTCA
** * * * * *
15563814 GAGAGGCTTAATCCGTAAGCCGGGGATCAGCCCGGTCTCTCTCTGCGTGCTATTGATCCTGCTGC
261 GAGAGGCAGAATACGCAAGCCGGGGACCAGCCCGGTC-CCCCCTGCGTGCTATTGATCCTGCTGC
15563879 TAGTCCTGCTGCAACAACCATCGGTCCGGT
325 TAGTCCTGCTGCAACAACCATCGGTCCGGT
* *
15563909 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACAAGCAAGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCAAGCGGGCGC
* * * *
15563974 TCAGCCGGACGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCC-GATCCCCCCTACGTGTAGTC
66 TCAGCCGGACAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAG-TCCCCCCTACGTGTAGCC
* ** * *
15564038 GATCCTGCTGTCGCAACCCTCGGT-CTGATATGATCTTAGACTGGGAATGAAC-TCTGTATGCTT
130 GATCCTGCTGCCGCAACCCTCAATCCAG-TATGATCTTAGACTAGGAATGAACTTC-GTATGCTT
* * * *
15564101 AGACAT-GGAATGAACTTCGTATGTCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAACTG
193 AGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAACCG
* * *
15564165 GTCGGAGAGGCAGAATATGCAAGTCGGGGACC-GACCCGGTCCCCCCTGCGTGCTAT
257 GTCAGAGAGGCAGAATACGCAAGCCGGGGACCAG-CCCGGTCCCCCCTGCGTGCTAT
15564221 CAATCCTACT
Statistics
Matches: 260, Mismatches: 47, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
354 19 0.07
355 240 0.92
356 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (354 bp):
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCAAGCGGGCGC
TCAGCCGGACAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGTAGCCG
ATCCTGCTGCCGCAACCCTCAATCCAGTATGATCTTAGACTAGGAATGAACTTCGTATGCTTAGA
CTGGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAACCGGTCA
GAGAGGCAGAATACGCAAGCCGGGGACCAGCCCGGTCCCCCCTGCGTGCTATTGATCCTGCTGCT
AGTCCTGCTGCAACAACCATCGGTCCGGT
Found at i:15564239 original size:184 final size:184
Alignment explanation
Indices: 15563913--15564282 Score: 474
Period size: 184 Copynumber: 2.0 Consensus size: 184
15563903 TCCGGTTGGG
* * * *
15563913 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACAAGCAAGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAAGCAAGCGGGCACTCAA
* * * *
15563978 CCGGACGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTACGTGTAGTCGATCC
66 CCGGACGGAGAGGCAGAATACGCAAGTCAGGGACCGACCCGATCCCCCCTACGTGTAGTCAATCC
* * * * **
15564043 TGCTGTCGCAACCCTCGGT-CTGATATGATCTTAGACTGGGAATGAACTCTGTAT
131 TACTGCCGCAACCCTCAGTCCAG-TATGATCTTAGACTACGAATGAACTCTGTAT
* * * **
15564097 GCTTAGACATGGAATGAACTTCGTATGTCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAAGCAAGCGGGCACTCAA
* * * * * *
15564162 CTGGTCGGAGAGGCAGAATATGCAAGTCGGGGACCGACCCGGTCCCCCCTGCGTGCTA-TCAATC
66 CCGGACGGAGAGGCAGAATACGCAAGTCAGGGACCGACCCGATCCCCCCTACGTG-TAGTCAATC
*
15564226 CTACTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTACGAATGAACTCTGTAT
130 CTACTGCCGCAACCCTCAGTCCAGTATGATCTTAGACTACGAATGAACTCTGTAT
15564281 GC
1 GC
15564283 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 154 0.97
185 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAAGCAAGCGGGCACTCAA
CCGGACGGAGAGGCAGAATACGCAAGTCAGGGACCGACCCGATCCCCCCTACGTGTAGTCAATCC
TACTGCCGCAACCCTCAGTCCAGTATGATCTTAGACTACGAATGAACTCTGTAT
Found at i:15564614 original size:26 final size:26
Alignment explanation
Indices: 15564573--15564625 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15564563 CTGGTCCGAT
*
15564573 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15564599 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTTCGTATG
15564625 C
1 C
15564626 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15565583 original size:159 final size:159
Alignment explanation
Indices: 15565282--15565719 Score: 346
Period size: 159 Copynumber: 2.8 Consensus size: 159
15565272 ACTCCATATG
* * * ** *
15565282 CTTAGACATGGAATGAACTTTGTATGCCTAAGCCAAACCACGAAATGAGCGTGCAGGCGCTTAGT
1 CTTAGACATGGAATGAACTTCGTATGCATAAGCCAAACCAAGAAATGAGCGTGCAGGCGCAGAGC
* ** * * * **
15565347 CGGTCGGAGAGGCAGAATGCATAAGCCGGGGATTGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
66 CGATCAAAGAGGCAGAATGCACAAGCAGGGGATCGGCCCGATCCCCCCCTGCGTGCTACCGATCC
** *
15565412 TGCTACCGTAACCCTCCACCTGGTCTGAT
131 CACTACCATAACCCTCCACCTGGTCTGAT
* * * *
15565441 CTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCAAGAAATGAGCGTGCGGGTGCAGAG
1 CTTAGACAT-GGAATGAACTTCGTATGCATAAGCCAAACCAAGAAATGAGCGTGCAGGCGCAGAG
* * * * * *
15565505 CCGATCAAAGAGGCATAATGCGCAAGTAGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTC
65 CCGATCAAAGAGGCAGAATGCACAAGCAGGGGATCGGCCCGATCCCCCCCTGCGTGCTACCGATC
* * * **
15565570 CCACTGCCATAACCCTCGATCC-AG-CTGGGG
130 CCACTACCATAACCCTCCA-CCTGGTCT-GAT
* * * * * * * * * * * **
15565600 CTTAGACATGGAATGAACTCCCTACGCCTAAGACAATCCACGAAATGGGTGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTTCGTATGCATAAGCCAAACCAAGAAATGAGCGTGCAGGCGCAGAG-
** * * * *
15565665 TGGCTC-AAGAGGCAGAATGCACAAGCCGGGGATCGACCCGAT-CCCCTCTGCGTGC
65 CCGATCAAAGAGGCAGAATGCACAAGCAGGGGATCGGCCCGATCCCCCCCTGCGTGC
15565720 GGCCAATCCT
Statistics
Matches: 222, Mismatches: 52, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
158 16 0.07
159 200 0.90
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTTCGTATGCATAAGCCAAACCAAGAAATGAGCGTGCAGGCGCAGAGC
CGATCAAAGAGGCAGAATGCACAAGCAGGGGATCGGCCCGATCCCCCCCTGCGTGCTACCGATCC
CACTACCATAACCCTCCACCTGGTCTGAT
Found at i:15565777 original size:158 final size:158
Alignment explanation
Indices: 15565354--15565778 Score: 399
Period size: 159 Copynumber: 2.7 Consensus size: 158
15565344 AGTCGGTCGG
* * * * *
15565354 AGAGGCAGAATGCATAAGCCGGGGATTGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTACC
1 AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
** * * * * * *
15565419 GTAACCCTCCACCT-GGTCTGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCAAG
66 GTAACCCT-CAGTTCAGTTTGATCTTAGACT-GGAATGAACTCCCTACGCATAAGACAACCCAAG
*
15565483 AAATGAGCGTGCGGGTGCAGAGCCGATCAA
129 AAATGAGCGTGCGGGTGCACAGCCGATCAA
* * ** * * * **
15565513 AGAGGCATAATGCGCAAGTAGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTCCCACTGCC
1 AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * * ** * * *
15565578 ATAACCCTC-GATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGACAATCCACG
66 GTAACCCTCAG-TTCAGTTTGATCTTAGAC-TGGAATGAACTCCCTACGCATAAGACAACCCAAG
* * * ** *
15565642 AAATGGGTGTGCGGGTGCTCAGTTGGCTC-A
129 AAATGAGCGTGCGGGTGCACAG-CCGATCAA
* * *
15565672 AGAGGCAGAATGCACAAGCCGGGGATCGACCCGAT-CCCCTCTGCGTGCGGCCAATCCTGCTGCC
1 AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
15565736 GTAACCCTCAGTTCAGTTTGATCTTAGACTGGAAATGAACTCC
66 GTAACCCTCAGTTCAGTTTGATCTTAGACTGG-AATGAACTCC
15565779 GTATGCTTAG
Statistics
Matches: 204, Mismatches: 56, Indels: 13
0.75 0.21 0.05
Matches are distributed among these distances:
157 3 0.01
158 55 0.27
159 142 0.70
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
GTAACCCTCAGTTCAGTTTGATCTTAGACTGGAATGAACTCCCTACGCATAAGACAACCCAAGAA
ATGAGCGTGCGGGTGCACAGCCGATCAA
Found at i:15565798 original size:26 final size:26
Alignment explanation
Indices: 15565758--15565810 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15565748 TCAGTTTGAT
*
15565758 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
15565784 CTTAGACATGG-AATGAACTCCATATG
1 CTTAGAC-TGGAAATGAACTCCATATG
15565810 C
1 C
15565811 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:15565915 original size:184 final size:184
Alignment explanation
Indices: 15565599--15565968 Score: 418
Period size: 184 Copynumber: 2.0 Consensus size: 184
15565589 TCCAGCTGGG
* * * *** *
15565599 GCTTAGACATGGAATGAACTCCCTACGCCTAAGACAATCCACGAAATGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATACGCCTAAGACAACCCACGAAACGAACGTGCGGGCGCTCAG
* * * *
15565664 TTGGCTCAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCTCTGCGTGCGGCCAATCC
66 TAGGCTCAAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGCGTCCGGCCAATCC
* * ***
15565729 TGCTGCCGTAACCCTCAGTTCAG-TTTGATCTTAGACTGGAAATGAACTCCGTAT
131 TGCTGCCGCAACCCTC-GGTCAGATCCAATCTTAGACTGGAAATGAACTCCGTAT
* * *
15565783 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATACGCCTAAGACAACCCACGAAACGAACGTGCGGGCGCTCAG
* * * ** * * * * ***
15565848 TAGGTTGAAGAGGCAGAATGCGCAAGTTGGGGACCGTCTCGGTCCCCCCTGCGTCCTGTTGATCC
66 TAGGCTCAAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGCGTCCGGCCAATCC
* * *
15565913 TGCTGCCGCAACCTTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCGCAACCCTCGGTCAGATCCAATCTTAGACTGGAAATGAACTCCGTAT
15565967 GC
1 GC
15565969 CTAAGTCAAC
Statistics
Matches: 151, Mismatches: 34, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
183 4 0.03
184 147 0.97
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATACGCCTAAGACAACCCACGAAACGAACGTGCGGGCGCTCAG
TAGGCTCAAGAGGCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGCGTCCGGCCAATCC
TGCTGCCGCAACCCTCGGTCAGATCCAATCTTAGACTGGAAATGAACTCCGTAT
Found at i:15566129 original size:159 final size:158
Alignment explanation
Indices: 15565783--15566199 Score: 482
Period size: 159 Copynumber: 2.6 Consensus size: 158
15565773 AACTCCGTAT
*
15565783 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
*** * * * * **
15565848 -TAGGTTGAAGAGGCAGAATGCGCAAGTTGGGGACCGTCTCGGTCCCCCCTGCGTCCTGTTGATC
66 CT-GACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGTCCCAGTCCCCCCTGCGTCCTGCCGATC
* * * * *
15565912 CTGCTGCCGCAACCTTCGGTCTGATCCAA
130 CAGCTGCCACAACCCTCGGTCCGAGCCAA
* * * * * * * *
15565941 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* *
15566005 GCTGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGTCCCAGTCCCCCTCTGCGTGCTGCCGAT
65 GCTGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGTCCCAGTCCCCC-CTGCGTCCTGCCGAT
*
15566070 CCAGCTGCCACAACCCTCGGTCCG-GCCGGA
129 CCAGCTGCCACAACCCTCGGTCCGAGCC-AA
* * * *
15566100 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
15566165 CTGACCGAAAAGGCAGAATACGCAAGTC-GGGATCG
66 CTGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCG
15566200 GTTCGGTCCC
Statistics
Matches: 214, Mismatches: 40, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 101 0.47
159 111 0.52
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CTGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGTCCCAGTCCCCCCTGCGTCCTGCCGATCC
AGCTGCCACAACCCTCGGTCCGAGCCAA
Found at i:15566309 original size:26 final size:26
Alignment explanation
Indices: 15566258--15566310 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15566248 CCGGTCCGAT
* *
15566258 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15566284 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15566310 C
1 C
15566311 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15567018 original size:26 final size:26
Alignment explanation
Indices: 15566980--15567032 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15566970 GGCTGAAAAT
15566980 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15567006 CTTAGACAT-GGAATGAAGTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15567032 C
1 C
15567033 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15568165 original size:159 final size:157
Alignment explanation
Indices: 15567874--15568365 Score: 393
Period size: 159 Copynumber: 3.1 Consensus size: 157
15567864 TTAGACATGC
* * * * ** * * *
15567874 AATGAACTCCGTATGCCTAAGCCAACCCATAAAGC-AAGCGTGCGGATGCTCAGCCGACCGGAGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGA-CGTACGGGCGCTGAACCAACCGGAGA
* ** * * * * * * ** * * *
15567938 GGCAGAATGCGCAAGTTGGGGATCGGCCC-GATCCCCCATTGCATGCTATCTATCCTGCTACCAT
65 GGCAGAACGCGCAAGCCGGAGATCGGCCCAG-TCCCCC-CTACGTGCTACCAATCCCACTGCTAC
*
15568002 AACCCTCAGTCCGATCCGATCTTAGACTGGG
128 AACCCTCGGTCCG-TCCGATCTTAGACTGGG
** *
15568033 AATGAACTCCGTATGCCTAA-CTCAACCCACAAAACGGGTGTACGGGCGCTGAACCGACCGGAGA
1 AATGAACTCCGTATGCCTAAGC-CAACCCACAAAACGGACGTACGGGCGCTGAACCAACCGGAGA
* * * * * * * *
15568097 GGCATAACGTGTAAGCCTGAGATTGGCCC-GATCCCCCTCTATGTGCTACCAGTCCCGCTG-TCA
65 GGCAGAACGCGCAAGCCGGAGATCGGCCCAG-TCCCCC-CTACGTGCTACCAATCCCACTGCT-A
* * **
15568160 CAACCCTCGGTTCGGCCGGGGCTTAGACAT-GG
127 CAACCCTCGGTCCGTCC-GATCTTAGAC-TGGG
* * * * *
15568192 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTTAGCCAACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGACGTACGGGCGCTGAACCAACCGGAGAG
* * * *
15568257 GCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTACCAATCCTACTGCTGCAAC
66 GCAGAACGCGCAAGCCGGAGATCGGCCCAGTCCCCCCTACGTGCTACCAATCCCACTGCTACAAC
**
15568322 CCTCGGTCCGGTCTTATCTTAGACTGGG
131 CCTCGGTCC-GTCCGATCTTAGACTGGG
15568350 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
15568366 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 57 0.22
159 199 0.77
160 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (157 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGACGTACGGGCGCTGAACCAACCGGAGAG
GCAGAACGCGCAAGCCGGAGATCGGCCCAGTCCCCCCTACGTGCTACCAATCCCACTGCTACAAC
CCTCGGTCCGTCCGATCTTAGACTGGG
Found at i:15568527 original size:184 final size:184
Alignment explanation
Indices: 15568205--15568549 Score: 455
Period size: 184 Copynumber: 1.9 Consensus size: 184
15568195 GAACTCCCTA
* * *
15568205 TGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTTAGCCAACCGGAGAGGCAGAATGCGCAA
1 TGCCTAAGCCAACCAACGAAACGGACGTGCGGGCGCTCAGCCAACAGGAGAGGCAGAATGCGCAA
* * *
15568270 GCCGGGGATCGGCCCAGTCCCCCCTACGTGCTACCAATCCTACTGCTGCAACCCTCGGTCCGGTC
66 GCCGGGGATCAGCCCAGTCCCCCCTACGTGCTACCAATCCTACTGCTGCAACCCTCAGTCCAGTC
*
15568335 TTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTT
131 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTT
* * * *
15568389 TGCCTAAGTCAACCAATGAAAC-GAGCGTGCGGGCGCTCAGTCGACTAGG-GAGGCA-AGATGCG
1 TGCCTAAGCCAACCAACGAAACGGA-CGTGCGGGCGCTCAGCCAAC-AGGAGAGGCAGA-ATGCG
* * * * ** * *
15568451 TAAGCCGGGGATCAGCTCGGTCCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAA-CCTCAGTCT
63 CAAGCCGGGGATCAGCCCAGT-CCCCCCTACGTGCTACCAATCCTACTGCTGCAACCCTCAGTCC
15568515 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
127 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15568550 ATAAGTCAAC
Statistics
Matches: 138, Mismatches: 19, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
183 3 0.02
184 104 0.75
185 31 0.22
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (184 bp):
TGCCTAAGCCAACCAACGAAACGGACGTGCGGGCGCTCAGCCAACAGGAGAGGCAGAATGCGCAA
GCCGGGGATCAGCCCAGTCCCCCCTACGTGCTACCAATCCTACTGCTGCAACCCTCAGTCCAGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTT
Found at i:15568885 original size:26 final size:26
Alignment explanation
Indices: 15568826--15568875 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15568816 CAGGACCGGT
15568826 CTCTG-AT-CTTAGACTGGGAATGAA
1 CTCTGTATGCTTAGACTGGGAATGAA
*
15568850 CTCTGTATGCTTAGACTGGGGATGAA
1 CTCTGTATGCTTAGACTGGGAATGAA
15568876 TTTCGTATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTCTGTATGCTTAGACTGGGAATGAA
Found at i:15569586 original size:26 final size:25
Alignment explanation
Indices: 15569544--15569592 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
15569534 GGCTCAAAAT
15569544 CTTAGACTGAAATGAACTCCGTACG
1 CTTAGACTGAAATGAACTCCGTACG
*
15569569 CTTAGACATGGAATGAACTCCGTA
1 CTTAGAC-TGAAATGAACTCCGTA
15569593 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (25 bp):
CTTAGACTGAAATGAACTCCGTACG
Found at i:15569761 original size:26 final size:26
Alignment explanation
Indices: 15569725--15569777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15569715 CCAGTCTGAT
*
15569725 CTTAGATTGGGCATGAACTCCGTATG
1 CTTAGACTGGGCATGAACTCCGTATG
*
15569751 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGCATGAACTCCGTATG
15569777 C
1 C
15569778 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGCATGAACTCCGTATG
Found at i:15570139 original size:170 final size:170
Alignment explanation
Indices: 15569751--15570290 Score: 633
Period size: 170 Copynumber: 3.2 Consensus size: 170
15569741 ACTCCGTATG
* * *
15569751 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGATCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAG-
* * * * * *
15569816 CGGTCGGAGAGGCATAATGCGCAAGCCAAGGATC-AGCCCGATCCCCCTCTACATGCTATCGATC
65 CGGGCGAAGAGGCATAATGCGCAAGCCGAGGATCGAGCCCGATCCCCC-CTGCGTGCTGTCGATC
* * ** * * **
15569880 CTGCTG-TCGGTCCTGCTACCACAACCGTCGGTTTG-GCTGGGG
129 CTGCTGCT-GGTCCTGCTACCACAACCTTCAGTCCGATC-CGAT
* * *
15569922 CTCAGACAT-GGAATGAACTTCGTATGCCTTAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAG
* * * *
15569986 TCGGGCGAAGAGGCAGAATGCGCAAGCCGGGGATCGAGCCAG-TCCCCCCTGTGTGCTGTCGATC
65 -CGGGCGAAGAGGCATAATGCGCAAGCCGAGGATCGAGCCCGATCCCCCCTGCGTGCTGTCGATC
* * *
15570050 CTGCTGCTGGTCTTGCTACCGCAATCTTCAGTCCGATCCGAT
129 CTGCTGCTGGTCCTGCTACCACAACCTTCAGTCCGATCCGAT
* * *
15570092 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCTATGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
* * * * *
15570157 CGGCCAGAGAGGCATAATGCGCAAGTCGAAGATCGA-CCCGATCTCCCCTGCGTGCTGTCGATCC
66 GGGCGA-AGAGGCATAATGCGCAAGCCGAGGATCGAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *
15570221 TGCTGCTGGTCCTGCTACCACAACCTTCAGTCCAATCTGAT
130 TGCTGCTGGTCCTGCTACCACAACCTTCAGTCCGATCCGAT
*
15570262 CTTAGACTGGGAATGAACTCCGCATGCCT
1 CTTAGACTGGGAATGAACTCCGTATGCCT
15570291 CAGCGGACCG
Statistics
Matches: 313, Mismatches: 49, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
169 9 0.03
170 205 0.65
171 93 0.30
172 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
GGGCGAAGAGGCATAATGCGCAAGCCGAGGATCGAGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCTGGTCCTGCTACCACAACCTTCAGTCCGATCCGAT
Found at i:15571641 original size:159 final size:157
Alignment explanation
Indices: 15570732--15571709 Score: 662
Period size: 158 Copynumber: 6.2 Consensus size: 157
15570722 AACTTCGTAT
* * * * * ** * *
15570732 GCTTAGACTGGG-CTGAAATTCGTATGCCGAAGTCAATGCACAAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
15570796 CCGGTCGGAGAGGCAGTATGTGCAAGCCGGGGAAT-GG-TCGGTCACCCCCTATGTGCTGTCGAT
66 CCGGTCGGAGAGGTAGAATGCGTAAGTCGGGG-ATCGGCCCGATC-CCCCCTACGTGCTGTCGAT
* ** ** * **
15570859 CCTACTATCGTAACCCTCGGTCCGATCCAA
129 CCTGCTGCCACAACCCTCGGTCCG-GCTGA
* * * * * *
15570889 TCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* ** * * * * * * *
15570954 TCGACCAGAGAGGTATAATGCGCAAGTCGAGGATCAGCCCGATCCCCGTCC-ATGTGCTG-CCAG
66 CCGGTCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGATCCCC--CCTACGTGCTGTCGA-
* * *
15571017 TCTTGCTGCCACAACCCTCGGTCCAGCTGGG
128 TCCTGCTGCCACAACCCTCGGTCCGGCT-GA
* * **
15571048 GCTTAGA-TATGGAATGAACAACC-TATGCCTAAGCCAACCCACGAAATG-GACGTGTAGGCGCT
1 GCTTAGACT-GGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGCGCT
* * * * ** * * *
15571110 CAGCCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCTTCTGCATGCTATCGA
63 CAGCCGGTCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGA
* ** * * *
15571175 TCCTGCTACCGTAATCCTCGATCCAGTCTGA
128 TCCTGCTGCCACAACCCTCGGTCC-GGCTGA
* * * * *
15571206 TCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCAACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* ** * * * * *
15571271 CTGGTCGGAGAGGTAGAATAAGTAAGTCGGGGACCGGTCCGATCCCCCTTGCATGCTGTCGATCC
66 CCGGTCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* *
15571336 TGCTGTCGCAACCCTCGGTCCGGTCTGA
131 TGCTGCCACAACCCTCGGTCCGG-CTGA
* * * * * * * *
15571364 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCCTACGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * ** * * * *
15571429 CTGATCGGAGAGGCATAATGTGCAAACCGAGGATCGACCCGGTCCCCTTCTACGTGCTGTCGATC
66 CCGGTCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGATCCCC-CCTACGTGCTGTCGATC
* *
15571494 CCGCTGCCACAACCCTCGGTCCGGCTGGG
130 CTGCTGCCACAACCCTCGGTCCGGCT-GA
* * *
15571523 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCGTACGGGCGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCGCTC
* ** **
15571586 AGCCGGCCGGAGAGGTAGAATGTATAAGTCGGGGGATCGGCCCGATCCCCCCTACGTGCTACCGA
64 AGCCGGTCGGAGAGGTAGAATGCGTAAGTC-GGGGATCGGCCCGATCCCCCCTACGTGCTGTCGA
* * ** * * * *
15571651 TCCTGTTACCGTAACCCTCAGTCTGATCCGA
128 TCCTGCTGCCACAACCCTCGGTCCG-GCTGA
* *
15571682 TCTTAGACTAGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
15571710 TTAGACTGGG
Statistics
Matches: 634, Mismatches: 163, Indels: 46
0.75 0.19 0.05
Matches are distributed among these distances:
157 16 0.03
158 312 0.49
159 285 0.45
160 21 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGGCTGA
Found at i:15571712 original size:26 final size:26
Alignment explanation
Indices: 15571683--15571735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15571673 CTGATCCGAT
15571683 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15571709 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15571735 C
1 C
15571736 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15572862 original size:158 final size:158
Alignment explanation
Indices: 15572333--15573227 Score: 680
Period size: 158 Copynumber: 5.6 Consensus size: 158
15572323 ACTCCATATG
* * *
15572333 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
*** * * * * * * * *
15572398 CAACCGGAGAGGCATAATACACAAGTCC-GAGAACCGACCCGATCCCCCCTGCGTGTTGTCGATC
66 CGGTCGAAGAGGCATAATGCGCAAG-CCAG-GGATCGACCCGGTCCCCTCTGCGTGCTGTCGATC
* * * *
15572462 CTGCTGCCACAACCCTCGATCCGATCCTAT
129 CTACTGCCGCAACCCTCGATCCGGTCCAAT
* * * * *
15572492 CTTAGAATGGGAATGAACTCCGTATGCCTGAG-CGAACCCATGAAAC-AGGCATGTGGGTGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGA-GCGTGCGGGTGCTCA
* * * * * * * ** *
15572555 TCCAGCCAAAGAGGCAGAATGCGAAAGTC-GAGGATCGACTTGGTCCCCTCTGTGTGCTG-CTGA
64 ACCGGTCGAAGAGGCATAATGCGCAAGCCAG-GGATCGACCCGGTCCCCTCTGCGTGCTGTC-GA
* * * *
15572618 TCCAACTGCCACAACCCTCGGTCCGGTCCGAT
127 TCCTACTGCCGCAACCCTCGATCCGGTCCAAT
* * * *
15572650 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * *
15572715 CGGTCGAAGAGGCATAATGCGCAAGCCAGGGACCGACTCGGTCCCCTCTACGTGCTGTCGATCCT
66 CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCCT
* ** *
15572780 ACTGCCGCAACCCTTGGCCCGATCCAAT
131 ACTGCCGCAACCCTCGATCCGGTCCAAT
* * * * **
15572808 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGTGTGCGAGCACT-AAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAA-
* * * * * *
15572872 CCGGTTGGAA-AGGCATAATGCGTAAGCCAAGGATCAACCTGGTCCCCCTCTGCGTGCTATCGAT
65 CCGG-TCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGT-CCCCTCTGCGTGCTGTCGAT
* * * ****
15572936 CCTGCTGCCGGTCCTACTGCCATAACCCTCGGTCTGG-CTGGGG
128 CCTACT----G--C--C-G-C--AACCCTCGATCCGGTC-CAAT
* * * *
15572979 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA-
* * * * * * * *
15573043 TCGGGTAG-AGAGGCAAAATGCGCAAGCCAGGGATC-AGCCCGATCCCCCCTACATGCTGTCGAT
64 ACCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCTCTGCGTGCTGTCGAT
* *
15573106 CCTACTACCGCAA-CCTCGATCCGGTCTAAT
128 CCTACTGCCGCAACCCTCGATCCGGTCCAAT
* * * * *
15573136 CTTAGACTGGAAATGAACTCCGTATGCATGAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * *
15573201 CGGTCAAAGAGGCATAATACGCTAGCC
66 CGGTCGAAGAGGCATAATGCGCAAGCC
15573228 GAGGATCAGC
Statistics
Matches: 582, Mismatches: 123, Indels: 64
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.01
157 82 0.14
158 265 0.46
159 101 0.17
160 1 0.00
161 1 0.00
162 1 0.00
163 1 0.00
164 1 0.00
165 1 0.00
167 1 0.00
168 1 0.00
169 1 0.00
170 24 0.04
171 91 0.16
172 5 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCCT
ACTGCCGCAACCCTCGATCCGGTCCAAT
Found at i:15573346 original size:26 final size:26
Alignment explanation
Indices: 15573294--15573346 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15573284 CTGGTCCGGT
**
15573294 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCTACATG
* *
15573320 CTTAGACTGGGGATGAACTCTACATG
1 CTTAGACCGGGAATGAACTCTACATG
15573346 C
1 C
15573347 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCTACATG
Found at i:15573740 original size:26 final size:26
Alignment explanation
Indices: 15573711--15573763 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15573701 GACTCAAAAT
15573711 CTTAGAC-TAAGAATGAACTCCGTATG
1 CTTAGACAT-AGAATGAACTCCGTATG
*
15573737 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
15573763 C
1 C
15573764 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:15573924 original size:26 final size:26
Alignment explanation
Indices: 15573883--15573935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15573873 CCGATCCGAT
15573883 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
15573909 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15573935 C
1 C
15573936 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15574342 original size:26 final size:26
Alignment explanation
Indices: 15574303--15574355 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15574293 TCAGTCTGAT
*
15574303 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15574329 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
15574355 C
1 C
15574356 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15574621 original size:159 final size:158
Alignment explanation
Indices: 15574442--15574830 Score: 383
Period size: 159 Copynumber: 2.5 Consensus size: 158
15574432 CGATCACCCA
15574442 CTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACT
1 CTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACT
* * * * * *
15574507 TCATATGCCTAAGTCAACCCACGAAA-TGAGCGTGCGGGCGCTGAACCGACCAGAA-AGGCATAA
66 CCATATGCCTAAGCCAACCCACGAAACGGA-CGTGCAGGCGCTCAACCGACC-GAAGAGGCAGAA
* *
15574570 TGCGCAAGCCGAGGATCAACCCGGTCCCCGT
129 TGCACAAGCCGAGGATCAACCCGGTCCCC-C
** * ** * * ****
15574601 CTGCGTGCTACCGGTCCTGCTGCCACAACCCTCGGTCTG-GCTGGGGCTTAGACAT-GGAATGAA
1 CTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGATC-CAATCTTAGAC-TGGGAATGAA
* * ** *
15574664 CTCCCTATGCCTAAGCCAACTCACGAAACGGACGTGCAGGCGCTCATTCGGCCGAAGAGGCAGAA
64 CTCCATATGCCTAAGCCAACCCACGAAACGGACGTGCAGGCGCTCAACCGACCGAAGAGGCAGAA
* *
15574729 TGCACAAGCCGAGGATCAGCCTGGTCCCCC
129 TGCACAAGCCGAGGATCAACCCGGTCCCCC
* * * * * * *
15574759 CTGCGTGCTGTCGATCCAGCTATCGCAATCCTTGATC-CAGTCTAATCTTAGACTGGGAATTAAC
1 CTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGA-TCCAATCTTAGACTGGGAATGAAC
*
15574823 TCCGTATG
65 TCCATATG
15574831 ATTAGACTAA
Statistics
Matches: 179, Mismatches: 44, Indels: 15
0.75 0.18 0.06
Matches are distributed among these distances:
157 1 0.01
158 53 0.30
159 122 0.68
160 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (158 bp):
CTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACT
CCATATGCCTAAGCCAACCCACGAAACGGACGTGCAGGCGCTCAACCGACCGAAGAGGCAGAATG
CACAAGCCGAGGATCAACCCGGTCCCCC
Found at i:15580467 original size:26 final size:26
Alignment explanation
Indices: 15580438--15580490 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15580428 CCAGTCCGAT
15580438 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15580464 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15580490 C
1 C
15580491 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15580667 original size:185 final size:184
Alignment explanation
Indices: 15580417--15580833 Score: 475
Period size: 185 Copynumber: 2.3 Consensus size: 184
15580407 CCTACTGTGG
* * * *
15580417 CAACCCTCAGTCCAGTCCGATCTTAGACT-AGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
1 CAACCCTCGGTCCGGTTCGATCTTAGACTGA-GAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
15580481 CTCCGTATGCCTATGTCAACCCATGAAACAAGCGTGCGGGCACTCAGTCAG-CCGAAGAAGCAGA
65 CTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG-CAGACCGAAGAAGCAGA
* *
15580545 ATGCACAAGCCAGGGATTGGCTCGATCCCCCC-CGACGTGCTGTCGATCCAGCTACCA
129 ATGCACAAGCCAGGGA-TAGCCCGATCCCCCCACG-CGTGCTGTCGATCCAGCTACCA
* * *
15580602 CAACCCTCGGTCCGGTTCAATCTTAGACTGAGAATGAACTCCATATGCTTAGGCAT-GGAATGAA
1 CAACCCTCGGTCCGGTTCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TGGGAATGAA
* * * * * *
15580666 CTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGAGGTAGAA
65 CTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGCAGACCGAAGAAGCAGAA
* *** * * * **
15580731 TGCATAAGTTGGGGATAGCCCGATCCCCCCATGCGTGCTGTCGATCCTGCTGCTG
130 TGCACAAGCCAGGGATAGCCCGATCCCCCCACGCGTGCTGTCGATCCAGCTACCA
* *
15580786 CAACCCTCGGTTCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCGGTTC-GATCTTAGACTGAGAATGAACTCCGTATGC
15580834 CTAACTCAAC
Statistics
Matches: 195, Mismatches: 32, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
183 2 0.01
184 74 0.38
185 117 0.60
186 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
CAACCCTCGGTCCGGTTCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGCAGACCGAAGAAGCAGAAT
GCACAAGCCAGGGATAGCCCGATCCCCCCACGCGTGCTGTCGATCCAGCTACCA
Found at i:15580995 original size:159 final size:158
Alignment explanation
Indices: 15580648--15581010 Score: 419
Period size: 158 Copynumber: 2.3 Consensus size: 158
15580638 AACTCCATAT
* *
15580648 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACAAGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAACAAGCATACGGGCGCTCA
* * * * *
15580712 GCCGATCGGAGAGGTAGAATGCATAAGTTGGGGATAGCCCGATCCCCCCATGCGTGCTGTCGATC
65 GCCAATCGGAGAGGCAGAATGCACAAGCTGGGGATAGCCCGATCCCCCCATGCGTGCTGCCGATC
* * ** *
15580777 CTGCTGCTGCAACCCTCGGTTCGGTCTGA
130 CCGCTACCACAACCCTCGATTCGGTCTGA
* * *
15580806 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCATACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCATACGGGCGCTCA
* * * * * *
15580870 GCCAATCGGAGAGGCATAATGTACAAGCTGGGGATCGATCCGGTCCCCCTC-TGCGTGCTGCCGG
65 GCCAATCGGAGAGGCAGAATGCACAAGCTGGGGATAG-CCCGATCCCCC-CATGCGTGCTGCCGA
*
15580934 TCCCGCTACCACAACCCTCGATTCGG-CTGGG
128 TCCCGCTACCACAACCCTCGATTCGGTCT-GA
* * * *
15580965 GCTTAGACATGGAATAAACTCCCTATGCCTAAGTCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAACTCAACCCACGAAA
15581011 GGGGTGTGCA
Statistics
Matches: 172, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 2 0.01
158 87 0.51
159 81 0.47
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCATACGGGCGCTCAG
CCAATCGGAGAGGCAGAATGCACAAGCTGGGGATAGCCCGATCCCCCCATGCGTGCTGCCGATCC
CGCTACCACAACCCTCGATTCGGTCTGA
Found at i:15582217 original size:26 final size:26
Alignment explanation
Indices: 15582181--15582233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15582171 CTAGTCCAAT
15582181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15582207 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15582233 C
1 C
15582234 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15583113 original size:26 final size:26
Alignment explanation
Indices: 15583084--15583136 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15583074 TCGGTCCGAT
15583084 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15583110 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15583136 C
1 C
15583137 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15583207 original size:183 final size:184
Alignment explanation
Indices: 15582899--15583292 Score: 490
Period size: 183 Copynumber: 2.1 Consensus size: 184
15582889 GTGGCTCAAA
* * * * * *
15582899 ATCTTAGACCGAGAATGAACTCCGTATGCTTATACTTGGAATGAACTCCGTATGCTTAAGGCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
15582964 CCATGAAACGACTGTACGGGCGCTCAGCCGGCCGGAGAGGTAGAATGTGCAAGCCGAGGATCGA-
66 CCACGAAACGACTGTACGGGCACTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGAC
* * * ** *
15583028 CTCAGT-CCCCTTGTGTGCTGCCGATCCTACTACCG-TAACCCTCGGTTCGGTCCG
131 CT-AGTCCCCCCTGTGTGCTACCGACCCTACTACCGCT-ACCCTCAATCCGGTCCG
15583082 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
15583147 CCACGAAACGAGC-GTGCGGGTACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGG
66 CCACGAAACGA-CTGTACGGGCACTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGA
* * * * *
15583211 CCTAGTCCCCCCCTGTGTGCTATCGACCCTGCTGCTGCTACCCTCAATCCGGTCTG
130 CCTAGT-CCCCCCTGTGTGCTACCGACCCTACTACCGCTACCCTCAATCCGGTCCG
15583267 ATCTTAGACTGGGAATGAACTCCGTA
1 ATCTTAGACTGGGAATGAACTCCGTA
15583293 CGCCTAAGTC
Statistics
Matches: 180, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
183 115 0.64
184 3 0.02
185 61 0.34
186 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGACTGTACGGGCACTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGAC
CTAGTCCCCCCTGTGTGCTACCGACCCTACTACCGCTACCCTCAATCCGGTCCG
Found at i:15583413 original size:159 final size:159
Alignment explanation
Indices: 15583110--15583605 Score: 396
Period size: 159 Copynumber: 3.1 Consensus size: 159
15583100 ACTCCGTATG
* * * * *
15583110 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGC
1 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCATACGGGTACTAAAC
* * * *
15583175 CGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCTAGTCCCCCCCTGTGTGCTATCGACCC
66 CGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCCTGCGTGCTATCGACCC
** *
15583240 TGCTGCTGCTACCCTCAATCCGGTCTGAT
131 TGCTGCCACAACCCTCAATCCGGTCTGAT
* * *
15583269 CTTAGAC-TGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCATACGGGTGCTAAA
1 CTTAGACAT-GGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCATACGGGTACTAAA
* * * ** * **
15583333 CCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTTGCGTGCTGTC-AGT
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCCTGCGTGCTATCGACC
* * *** * * **
15583397 TTCGTTGCCACAACCCTTGGT-CTGACTGGGG
130 CT-GCTGCCACAACCCTCAATCCGGTCT-GAT
* * * * * * ** * *
15583428 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCATACGGGTACTAAAC
* * * * * *
15583493 TG-GCTGGAGAGGCAAAATGCGCAAGCCGTGGATCGGCCC-GAT-CCCCCCTGCATGCTATCGAT
66 CGATC-GGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCAG-TCCCCCCCTGCGTGCTATCGAC
* * ** *
15583555 CCTACTGTCGTAACCCTCGATCCGGTCTGAT
129 CCTGCTGCCACAACCCTCAATCCGGTCTGAT
15583586 CTT--ACATTGGGAATGAACTC
1 CTTAGACA-T-GGAATGAACTC
15583606 TGTATACTTA
Statistics
Matches: 261, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
156 3 0.01
157 1 0.00
158 48 0.18
159 208 0.80
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCATACGGGTACTAAAC
CGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCCTGCGTGCTATCGACCC
TGCTGCCACAACCCTCAATCCGGTCTGAT
Found at i:15584518 original size:26 final size:26
Alignment explanation
Indices: 15584489--15584541 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15584479 CTGGTCCGAT
15584489 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15584515 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15584541 C
1 C
15584542 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15585259 original size:26 final size:26
Alignment explanation
Indices: 15585221--15585273 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15585211 GGCTCAAACT
15585221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15585247 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15585273 C
1 C
15585274 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15587871 original size:125 final size:126
Alignment explanation
Indices: 15587670--15587899 Score: 304
Period size: 125 Copynumber: 1.8 Consensus size: 126
15587660 CCGGTCTGAT
* * ** * * *
15587670 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
*
15587735 CAGCCGGAGAGGCATAATGCGCAAGCC-GGGATCGACCCACAACCCTCGGTCTAGCTGGTG
66 CAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCACAACCCTCGGTCTAGCTGGTG
* *
15587795 CTTAGACAT-GGAATGATCTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGA-GCGTGCGGGCGCTCA
* * *
15587858 GCCGGCTGGAGAGGCAGAATGCGCAAGCCATGGATCGACCCA
64 GCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCA
15587900 GTCCCCCCTG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
124 1 0.01
125 76 0.85
126 12 0.13
ACGTcount: A:0.27, C:0.29, G:0.28, T:0.16
Consensus pattern (126 bp):
CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCACAACCCTCGGTCTAGCTGGTG
Found at i:15587982 original size:26 final size:26
Alignment explanation
Indices: 15587953--15588005 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15587943 CCGGTCTGAT
15587953 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15587979 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15588005 C
1 C
15588006 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15588362 original size:26 final size:26
Alignment explanation
Indices: 15588333--15588385 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588323 CCAGTCCGAT
15588333 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15588359 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15588385 C
1 C
15588386 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15589896 original size:26 final size:26
Alignment explanation
Indices: 15589867--15589919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15589857 CTTATTAGAT
* *
15589867 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15589893 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15589919 C
1 C
15589920 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15590189 original size:185 final size:184
Alignment explanation
Indices: 15589864--15590212 Score: 432
Period size: 185 Copynumber: 1.9 Consensus size: 184
15589854 GCTCTTATTA
* * *
15589864 GATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGATTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * **
15589929 CCCATGAAACGAGTGTGCGGGCACTCAGTCGATCAGAGACGTAGAATGCACAAACCGGGGATTGA
66 CCCATAAAACGAGCGTGCGGGCACTCAACCGATCAGAGACGTAGAATGCACAAACCGAGGACCGA
*
15589994 CCCGGTCCCCCTCTGCATGCTACCGATCCTACTGCTGTAACCCTCGATCCGATCC
131 CCCAGTCCCCC-CTGCATGCTACCGATCCTACTGCTGTAACCCTCGATCCGATCC
*
15590049 GATCTTAGATTGGGAATGAACTCTATATGCTTAGACAT-GGAATTAACTCCGTATGCCTAAGCCA
1 GATCTTAGATTGGGAATGAACTCTATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * **
15590113 ACCCATAAAATGAGCGTGCGGGCGCTTAACCG-GCTGAAGAGGTAGAATGCGCAAGTCGAGGACC
65 ACCCATAAAACGAGCGTGCGGGCACTCAACCGATCAG-AGACGTAGAATGCACAAACCGAGGACC
* ** *
15590177 GACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
129 GACCCAGTCCCCCCTGCATGCTACCGATCCTACTGC
15590213 CACAACCTTC
Statistics
Matches: 137, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
184 21 0.15
185 115 0.84
186 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
GATCTTAGATTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCATAAAACGAGCGTGCGGGCACTCAACCGATCAGAGACGTAGAATGCACAAACCGAGGACCGA
CCCAGTCCCCCCTGCATGCTACCGATCCTACTGCTGTAACCCTCGATCCGATCC
Found at i:15590345 original size:158 final size:159
Alignment explanation
Indices: 15590078--15590378 Score: 347
Period size: 158 Copynumber: 1.9 Consensus size: 159
15590068 ACTCTATATG
* * * * *
15590078 CTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTTAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAATGAGCATGCGGGCGCTGAAC
* *
15590143 CGGCTGAAGAGGTAGAATGCGCAAGTCGAGGACCGACCCAGTCCCC-CCTGCGTGCTGTCGATCC
66 CGGCTGAAGAGGCAGAATGCGCAAGTCGAGGACCGACCCAGTCCCCACCTACGTGCTGTCGATCC
* *
15590207 TGCTGCCACAACCTTCGGTCTAGTCTGAT
131 CGCTACCACAACCTTCGGTCTAGTCTGAT
* * * *
15590236 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCATTCGGGGGCTG-A
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCACAAAATGAGCATGCGGGCGCTGAA
* * * * * * * * * * *
15590299 GCTGATCGAAGAGGCATAATGTGCAAGTCGGGGATCGGCCCGGTCCCCATCTACGTGCTGTCGGT
65 CCGGCT-GAAGAGGCAGAATGCGCAAGTCGAGGACCGACCCAGTCCCCACCTACGTGCTGTCGAT
15590364 CCCGCTACCACAACC
129 CCCGCTACCACAACC
15590379 CTCGATTTGA
Statistics
Matches: 116, Mismatches: 24, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
157 5 0.04
158 85 0.73
159 26 0.22
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAATGAGCATGCGGGCGCTGAAC
CGGCTGAAGAGGCAGAATGCGCAAGTCGAGGACCGACCCAGTCCCCACCTACGTGCTGTCGATCC
CGCTACCACAACCTTCGGTCTAGTCTGAT
Found at i:15590592 original size:26 final size:26
Alignment explanation
Indices: 15590551--15590603 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15590541 CTGGTCTGAT
*
15590551 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15590577 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15590603 C
1 C
15590604 ATAATTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15591081 original size:158 final size:158
Alignment explanation
Indices: 15590804--15591195 Score: 418
Period size: 158 Copynumber: 2.5 Consensus size: 158
15590794 ACATGGAGTT
* *
15590804 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAG
* * * * *
15590869 AATGTGCAAGCCGAGGATCGACTAGGTCCCTCCTACATGCTGTCAATCCTACTGCCACAACCCTC
66 AATGTGCAAGCCGAAGATCGACCAGGTCCCCCCTACATGCTGCCAATCCCACTGCCACAACCCTC
*
15590934 GATCCAGTCCGATCTTAGACTGGGAATG
131 AATCCAGTCCGATCTTAGACTGGGAATG
* * * * * *
15590962 AACTCCGTATG-CTAAAGTCAACCCACGAAACGAGCGTACGGGTGTTGAGCCAGTCGGAGAGGCA
1 AACTCCGTATGCCT-AAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCA
* * * * *
15591026 TAATGTGTAAGCC-AAGATC-AGCCCGGTCCCCCTCTGCATGCTGCCAGTCCCACTGCCACAACC
65 GAATGTGCAAGCCGAAGATCGA-CCAGGTCCCCC-CTACATGCTGCCAATCCCACTGCCACAACC
* * ** *
15591089 CTCAATCC-GACTGGGGCCTAGACAT-GGAATG
128 CTCAATCCAGTC-CGATCTTAGAC-TGGGAATG
* * * * *
15591120 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCCAG-CTAGAGAGGCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCGA-AGAGGCA
*
15591184 GAATGCGCAAGC
65 GAATGTGCAAGC
15591196 TGGGGATCGG
Statistics
Matches: 190, Mismatches: 37, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 18 0.09
158 168 0.88
159 3 0.02
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (158 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAG
AATGTGCAAGCCGAAGATCGACCAGGTCCCCCCTACATGCTGCCAATCCCACTGCCACAACCCTC
AATCCAGTCCGATCTTAGACTGGGAATG
Found at i:15591292 original size:26 final size:26
Alignment explanation
Indices: 15591263--15591318 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15591253 CTGGTCTGAT
*
15591263 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15591289 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15591315 CTTA
1 CTTA
15591319 TGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15592188 original size:26 final size:26
Alignment explanation
Indices: 15592144--15592193 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15592134 TCGATCCGAT
*
15592144 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15592170 CTTAGACTAGGG-ATGAACTCCGTA
1 CTTAGACT-GGGAATAAACTCCGTA
15592194 AGCCTAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15592906 original size:26 final size:26
Alignment explanation
Indices: 15592868--15592920 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15592858 GCCTCAAACT
*
15592868 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15592894 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
15592920 C
1 C
15592921 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15593259 original size:26 final size:26
Alignment explanation
Indices: 15593208--15593260 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15593198 CCAGTCCGAT
* * *
15593208 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15593234 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15593260 C
1 C
15593261 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15593725 original size:26 final size:26
Alignment explanation
Indices: 15593687--15593739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15593677 GGCTCAAACT
** *
15593687 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15593713 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
15593739 C
1 C
15593740 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:15593976 original size:39 final size:39
Alignment explanation
Indices: 15593922--15594018 Score: 185
Period size: 39 Copynumber: 2.5 Consensus size: 39
15593912 TGAAATGGGT
15593922 TGTTGCTGGTCCTACTGCCGCTCTGTGTGCTGCTGATCC
1 TGTTGCTGGTCCTACTGCCGCTCTGTGTGCTGCTGATCC
15593961 TGTTGCTGGTCCTACTGCCGCTCTGTGTGCTGCTGATCC
1 TGTTGCTGGTCCTACTGCCGCTCTGTGTGCTGCTGATCC
*
15594000 TGTTGCTGGTCCTGCTGCC
1 TGTTGCTGGTCCTACTGCC
15594019 ACAACCCTAG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.04, C:0.31, G:0.29, T:0.36
Consensus pattern (39 bp):
TGTTGCTGGTCCTACTGCCGCTCTGTGTGCTGCTGATCC
Found at i:15594387 original size:26 final size:26
Alignment explanation
Indices: 15594358--15594410 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15594348 CCGGTTAAAT
15594358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15594384 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15594410 C
1 C
15594411 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15595689 original size:667 final size:667
Alignment explanation
Indices: 15594009--15595757 Score: 1811
Period size: 667 Copynumber: 2.6 Consensus size: 667
15593999 CTGTTGCTGG
* * * * *
15594009 TCCTGCTGCCACAACCCTAGGTTCGATCCAATCTTAGACTGGGAATGAACTCTATATGCCTAAGT
1 TCCTGCTACCACAACCCT-CGATCGATCCGATCTTAGACTGGGAATGAACCCTATATGCCTAAGT
* * * * *
15594074 CAACTCACGGAATGAGCATGCGGGCGCTGAGCCAGCCAGAGAGT-CATAATGCGCAAGCCGGGGA
65 CAACCCACGAAACGAGCATGCGGGCGCTGAGCCA-CC-GAAAATGCATAATGCGCAAG-CGGGGA
* * * * **
15594138 TCGGCCCAGTCCCCCTCTGTGTGCTGTCGGTCCTGTTGCCACAACCCTCGATCCGACTGGGGCTT
127 TCGGCCGA-TCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTT
* * * * * * *
15594203 AGACATGGAATGAACTACCTATGCCTAAGCTAGCCAATGAAATGGGCGTGCGGGCGTTCAACCGA
191 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCCGA
* * * * ** * * *
15594268 CCGAAGAGGCAAAATGTGCAAGTCAAGGATTGACTTGGTCCCCCCTGCGTGCTACCGATCTTGCT
256 CTGGAGAGGCAGAATGTGCAAGCCGGGGATTGACTCGAT-CCCCCTGCATGCTACCGATCTTGCT
* * * *
15594333 GCCGTAACCCTCGATCCGGT-TAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
320 GCCGCAACCCTCGATCCGATCT-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGA
* ** *
15594397 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTACAGGCGCACAGCCGGTCGAAAAGGC
384 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACAGGCGCACAGCCGGCCGAAAAGGC
* **
15594462 AGAATGCACAAGCCGAGGATCAACCCAGTCCCCCCCTACATGCTGTCGATCCTGCTGCTGGTCCT
449 AGAATGCACAAGCCGAGGATCAACCCAGTCCCCCCCTACATGCTGTCGATCCTGCTCCTGGTAAT
* * * *
15594527 ACTATCGCAACCCTCGATCCGATCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCACC
514 ACTAGCGCAACCCTCGATCCGATCCCAGCTTAGACTGAGAATGAACTCCGTATGCCTAAACCAAC
* *** * * * ***
15594592 CCATGAAACGAGCGTGCGGGTGTTCAACCGACCGAAGAGGTAGAATGCGCAAGCCATGGATCGGC
579 CCACGAAACGAGCGTGCGGGCACTCAACCGAACGAAGAGGCAGAATGCGCAAGCCAGGGATCCAA
*
15594657 CCGATCCCCCCTGCATGCTGTCGA
644 CCGATCCCCCCTACATGCTGTCGA
* * * *
15594681 TCCTGCTACCACAACCCTCGGTCCAGCCCGATCTTAGACTGGGAATGAACTCC-GTATGCCTAAG
1 TCCTGCTACCACAACCCTCGATCGA-TCCGATCTTAGACTGGGAATGAAC-CCTATATGCCTAAG
* * * * * *
15594745 TCAACCCATGAAACGAGCATTCGAGCACTGAGCCAACC-AGAGAGGCATAATGCGCAAGC-----
64 TCAACCCACGAAACGAGCATGCGGGCGCTGAGCC-ACCGA-AAATGCATAATGCGCAAGCGGGGA
* * * * *
15594804 T-GG--G-TCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACCACCGTCGGTCCAGTAGGGGCTTA
127 TCGGCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTA
* * * * * **
15594865 GACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTTAGTCGGT
192 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCCGAC
* ** * * * *
15594930 TGGAGAGGTAGAATACGCAAGCTGGGGATTGACTCTATCCCCCTGCATGCTGCCAAT-TCTGCTG
257 TGGAGAGGCAGAATGTGCAAGCCGGGGATTGACTCGATCCCCCTGCATGCTACCGATCT-TGCTG
* * *
15594994 TCGCAACCCTCGATCC-AGTCTGATCTTAGATTGGGAATAAACTTCGTATGCTTAGACTGGGGAT
321 CCGCAACCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGAT
* ** * * * * *
15595058 GAAGTCCGTATGCCTAAGTCAACCCACGAAATTACCGTAC-GGTGCTCAGCTGGCCGGAGAGGCA
385 GAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACAGGCGCACAGCCGGCCGAAAAGGCA
* * * * * * * * * *
15595122 TAATGCGCAAGTCGGGGATCAGCCCGGTCCCTCTCTGCGTGCTGTCGAT-CTCGCTACCT-GTAA
450 GAATGCACAAGCCGAGGATCAACCCAGTCCCCCCCTACATGCTGTCGATCCT-GCT-CCTGGTAA
* * *** * *
15595185 TGCT-GCGACAACCCTCG-TCC-AGCTGGGGCTTAGACTTAGAATGAACTCCGTATGCCTAAGCC
513 TACTAGCG-CAACCCTCGATCCGATC-CCAGCTTAGACTGAGAATGAACTCCGTATGCCTAAACC
* * * * *
15595247 AACCCACGAAACGAGGGTGCGGGCACTCAGCCGAACGGAGAGGCAGAATGCGCAAGTCGGGGA-C
576 AACCCACGAAACGAGCGTGCGGGCACTCAACCGAACGAAGAGGCAGAATGCGCAAGCCAGGGATC
* * **
15595311 CAATCGGTCCCCCCTATGTGCTGTCGA
641 CAACCGATCCCCCCTACATGCTGTCGA
* ** *
15595338 TCCTGTTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACCCTATATGCCTAAGT
1 TCCTGCTACCACAACCCTCGATC-GATCCGATCTTAGACTGGGAATGAACCCTATATGCCTAAGT
* * *
15595403 CAACCCACGAAACGAGCGTGCGGGTGCTGAGCCTACCGAAAATGCATAATACGCAAGTCGGGGAT
65 CAACCCACGAAACGAGCATGCGGGCGCTGAGCC-ACCGAAAATGCATAATGCGCAAG-CGGGGAT
* * * *
15595468 CGGCTCGATCCTCCTCTGTGTGTTGTCGGTCCCGCTACCACAACCCTCGGTCCGGTTGAGGCTT-
128 CGGC-CGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTA
*
15595532 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGCCGAC
192 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCCGAC
* * * *
15595597 TGGAGAGGCAGAATGTGCAAGCCGGGGATTGGCCCGATCCCCCTGCATGCTATCGATCTTGCTAC
257 TGGAGAGGCAGAATGTGCAAGCCGGGGATTGACTCGATCCCCCTGCATGCTACCGATCTTGCTGC
* * * * *
15595662 CACAACCCTCGACCCGATCTGATCTTAGACCGAGAATGAAC-TCTGTATGCTTAGGCTGGGGATG
322 CGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGGATG
*
15595726 AACTCC-TATGCCTAAGTCAACCCATGAAACGA
386 AACTCCGTATGCCTAAGTCAACCCACGAAACGA
15595758 GCGTGCGGAT
Statistics
Matches: 867, Mismatches: 181, Indels: 64
0.78 0.16 0.06
Matches are distributed among these distances:
656 2 0.00
657 119 0.14
658 91 0.10
659 75 0.09
660 111 0.13
661 124 0.14
663 1 0.00
664 2 0.00
665 2 0.00
666 26 0.03
667 166 0.19
668 49 0.06
670 1 0.00
671 5 0.01
672 91 0.10
673 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (667 bp):
TCCTGCTACCACAACCCTCGATCGATCCGATCTTAGACTGGGAATGAACCCTATATGCCTAAGTC
AACCCACGAAACGAGCATGCGGGCGCTGAGCCACCGAAAATGCATAATGCGCAAGCGGGGATCGG
CCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCCGACTGGA
GAGGCAGAATGTGCAAGCCGGGGATTGACTCGATCCCCCTGCATGCTACCGATCTTGCTGCCGCA
ACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGACCGTACAGGCGCACAGCCGGCCGAAAAGGCAGAATGC
ACAAGCCGAGGATCAACCCAGTCCCCCCCTACATGCTGTCGATCCTGCTCCTGGTAATACTAGCG
CAACCCTCGATCCGATCCCAGCTTAGACTGAGAATGAACTCCGTATGCCTAAACCAACCCACGAA
ACGAGCGTGCGGGCACTCAACCGAACGAAGAGGCAGAATGCGCAAGCCAGGGATCCAACCGATCC
CCCCTACATGCTGTCGA
Found at i:15596791 original size:26 final size:26
Alignment explanation
Indices: 15596750--15596802 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15596740 CCAGTTAGAT
*
15596750 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15596776 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15596802 C
1 C
15596803 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15596989 original size:26 final size:26
Alignment explanation
Indices: 15596960--15597015 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15596950 CCGGTCTGAT
*
15596960 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATC
15596986 CTTAGACATGGAATGAACTCCGTATC
1 CTTAGACATGGAATGAACTCCGTATC
15597012 CTTA
1 CTTA
15597016 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:15597856 original size:171 final size:171
Alignment explanation
Indices: 15597568--15598126 Score: 499
Period size: 171 Copynumber: 3.3 Consensus size: 171
15597558 AGAGGTCAAC
* *
15597568 CGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTACTGTCGATCCCACT
1 CGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTACTGTCGATCCCACT
* * *
15597633 ACCAGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGTTTAGGCATGGAATGAAC-TCTGTATGC
66 ACCAGTCCTGCTGCCACAACCCTCGGTCCAGCTACGATTTAGACATGGAATGAACTTC-GTATGC
* * *
15597697 CTAAGCCAA-CCAGCAAAACGAGCGTGTGGGTGCTCAGTCGGT
130 CTAAGCCAACCCA-CAAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * * *
15597739 CGGAGAGGCAAAATACGCAAGCCGGGGATCGGCCC-AGTCCCCCTGTGCGTGCTGTCGATCCTAC
1 CGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCGTACTGTCGATCCCAC
* ** * *
15597803 TGCTGGTCCTGCTGCCACAACCCTCGGTCC-GGTCCGATATTAGAC-TGGGAATGAACTTCGTAT
65 TACCAGTCCTGCTGCCACAACCCTCGGTCCAGCTACGAT-TTAGACAT-GGAATGAACTTCGTAT
* * * * * *
15597866 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAGCCTGT
128 GCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * ** * *
15597910 CGGAGAGGCATAATGCGGAAGCCGAGGATCGGCTCGATCCCCCTCTATGTGCTGCCGAT----C-
1 CGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTACTGTCGATCCCACT
* ** ** * *
15597970 -CC-G---T--TGCCGCAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGC
66 ACCAGTCCTGCTGCCACAACCCTCGGTCCAG-CTACGATTTAGACATGGAATGAACTTCGTATGC
* * * *
15598027 CTATGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGT
130 CTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * * * *
15598069 CGGAGAGGCAGAATGCGCATGCTGGGGATCGGCTCGATCCCTC-CTGCGTGCTGTCGAT
1 CGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTACTGTCGAT
15598127 GCTGCTATCG
Statistics
Matches: 321, Mismatches: 59, Indels: 29
0.78 0.14 0.07
Matches are distributed among these distances:
158 12 0.04
159 111 0.35
160 3 0.01
161 1 0.00
164 1 0.00
165 1 0.00
167 1 0.00
170 6 0.02
171 179 0.56
172 6 0.02
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (171 bp):
CGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTACTGTCGATCCCACT
ACCAGTCCTGCTGCCACAACCCTCGGTCCAGCTACGATTTAGACATGGAATGAACTTCGTATGCC
TAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGT
Found at i:15598187 original size:26 final size:26
Alignment explanation
Indices: 15598158--15598210 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598148 CCAGTCTGAT
15598158 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
15598184 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
15598210 C
1 C
15598211 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15598916 original size:26 final size:26
Alignment explanation
Indices: 15598878--15598930 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598868 CTCTCAAACT
*
15598878 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
15598904 CTTAGACAT-GGAATAAACTTCGTATG
1 CTTAGAC-TGGGAATAAACTTCGTATG
15598930 C
1 C
15598931 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:15604060 original size:159 final size:159
Alignment explanation
Indices: 15603758--15604154 Score: 345
Period size: 159 Copynumber: 2.5 Consensus size: 159
15603748 ACTCCGTATG
* * * *
15603758 CTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTTAGC
1 CTTAGACATGGAATAAACTCCATATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTTAGC
* * * * *
15603823 CGGCCGGAGAGGTAGAATGCATATGTCAAAGATCAGCCCGATCCCCTTCTGCGTGCTATCGATCC
66 CGACCGAAGAGGCAGAATGCATATGTCAAAGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCC
* * *
15603888 TACTGTCGCAACCCTCGGTTCGGTCCGAT
131 CACTGCCACAACCCTCGGTTCGGTCCGAT
* * *
15603917 CTTAGACTTGGAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCG-TTGAG
1 CTTAGACATGGAATAAACTCCATATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTT-AG
* * * * * * *
15603981 CCGATCGAAGAGGCATAATGTGCA-A-GTCGAGGATCGGTCCGGTCCCCCTCTGCGTGCTACC-A
65 CCGACCGAAGAGGCAGAA--TGCATATGTCAAAGATCAGCCCGATCCCCCTCTGCGTGCTACCGA
* * * * * **
15604043 GTCCCACTGCCATAACCCTCAG-TCCGACTGGGG
128 -TCCCACTGCCACAACCCTCGGTTCGGTC-CGAT
* * * * * ** * *
15604076 CTTAGACATGAAATGAACTCCTTATGCTTAAGCCAATCCCATGAAACGGGCATGCGGGCGCTCAG
1 CTTAGACATGGAATAAACTCCATATGCATAAGCCAA-CCCACGAAACGAACGTGCGGGCGCTTAG
* *
15604141 CCAACCGGAGAGGC
65 CCGACCGAAGAGGC
15604155 GGACTGCGCA
Statistics
Matches: 188, Mismatches: 43, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
158 7 0.04
159 143 0.76
160 33 0.18
161 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATAAACTCCATATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTTAGC
CGACCGAAGAGGCAGAATGCATATGTCAAAGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCC
CACTGCCACAACCCTCGGTTCGGTCCGAT
Found at i:15604264 original size:26 final size:26
Alignment explanation
Indices: 15604235--15604287 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15604225 CCGGTCCAAT
15604235 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15604261 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15604287 C
1 C
15604288 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15604424 original size:344 final size:341
Alignment explanation
Indices: 15603917--15605572 Score: 1527
Period size: 344 Copynumber: 4.8 Consensus size: 341
15603907 TCGGTCCGAT
* * * * * * * * *
15603917 CTTAGACTTGGAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGCGCGCTCAGC
* * *** * * * * * *
15603982 CGATCGAAGAGGCATAATGTGCAAGTCGAGGATCGGTCCGGTCCCCCTCTGCGTGCT-ACCAGTC
66 CGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTGTCGA-TC
* * * * * *
15604046 CCACTGCCATAACCCTC-AGTCCGACTGGGGCTTAGACATGAAATGAACTCCTTATGCTTAAGCC
130 CCGCTGCCACAACCCTCGA-TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * *
15604110 AATCCCATGAAACGGGCATGCGGGCGCTCAGCCAACCGGAGAGGCGGACTGCGCAAGCCGGGGAT
194 AA-CCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGAT
* * * * * **
15604175 TGGCCCGGTCCCCCTAGCATGCTATCGATCCTACTGTCGCAACCCTCGATCCGGTCCAATCTTAG
258 CGACCCGATCCCCCTA-CATGCTACCGATCCTACTGTCGCAACCCTCG-TCTGGTCTGATCTTAG
15604240 ACTGGGAATGAACTCCGTATG
321 ACTGGGAATGAACTCCGTATG
*
15604261 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGCGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGCGCGCTCAGC
* * * *
15604326 CGGCTAGG-GAGGCATAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCACTGCGTGCTGTCGATC
66 CGG-TCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTGTCGATC
*
15604390 CCGCTGCCACAAACCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * *
15604455 ACCCACGAAACGGGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATGCACAAGCCGGAGGATC
195 ACCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGG-GGATC
* * * *
15604520 GACCCGATCCCCCTTACATGCTGCCGATCCTGCTG-CAGCAACCCTCGGTCTAGTTTGATCTTAG
259 GACCCGATCCCCC-TACATGCTACCGATCCTACTGTC-GCAACCCTC-GTCTGGTCTGATCTTAG
15604584 ACTGGGAATGAACTCCGTATG
321 ACTGGGAATGAACTCCGTATG
* * *
15604605 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTG-GCGGGGCTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGC-GCGCTCAG
* * * *
15604669 CCGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCTCGGTCCCCCGCTGCATACTGTCGGTC
65 CCGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTGTCGATC
* * * * *
15604734 CTGCTGCCACAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTACCTATTCCTAAGCCA
130 CCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * ** * * * * *
15604799 ACCCAGGAAATGGGCGTGCGGGTGCTCAGCCGACCAAAGAGGCAGAATGCACATGTCGAGGATCG
195 ACCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCG
* * * * ** * *
15604864 ACCTGATCCCCCATGCGTACTGTCGATCCTACTATCGCAACCCTTTGTCTGGTCTGATCTTAGAC
260 ACCCGATCCCCC-TACATGCTACCGATCCTACTGTCGCAACCC-TCGTCTGGTCTGATCTTAGAC
* * *
15604929 TAGGAATCAACTCTGTATG
323 TGGGAATGAACTCCGTATG
* * * *
15604948 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGTGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGCGCGCTCAGC
* * * * ** *
15605013 CGGTCGGAGAGGCATAAAGCAAAAGTTGGGGATCAGCCCGATCCCCCGCTGCGTGCTACCGGTCC
66 CGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTGTCGATCC
* * * * *
15605078 CCCTACCACAACCCTCGGTCCAGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
15605143 CCCACGAAACGAGCGTGTC-GGCACTCAGCTAACCGAAGAGGCAGAATGCGCAAGCTGGGGATCG
196 CCCACGAAACGGGCGTG-CGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCG
* * * * *
15605207 ACCCGATCCCCCCTACGTGCTACCGATCCTGCTGCCTGTCCTACTGCCATAACCCTTGATCCGGA
260 ACCCGAT-CCCCCTACATGCTACCGAT-C--CT-ACTG---T-C-G-C--AACCCTCG-TCTGGT
* *
15605272 CAGAT-TTAGACTGGGAATGAACTCTGTATG
311 CTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * * *
15605302 CTTAGACAT-GGAATAAACTCCGTCTGCTTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAG
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGCGCGCTCAG
* * * * ** * * *
15605366 TCGGTCGGAGAGGCAGAATGCCTAAG-CTGGTGATCAGCCCCTTCCCTC-CTGCATGCTATCGAT
65 CCGGTCGGAGAGGCATAATGCATAAGTC-GGGGATCAGCCCGGTCCCCCGCTGCGTGCTGTCGAT
**** * ** ** *** *
15605429 TTTACTGTCACAACCCTCGATCCAATCT-GATCTTAGAC-TGGGAATGAACTTTGTATGCATAAG
129 CCCGCTGCCACAACCCTCGATCC-GGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAG
* * * * ** * * * * ** *
15605492 TCAACCCATGAAACGAGTGTGCGGGTGCTGAGCCAGCCGAAAAGGCATAATGCACAAGCCAAGAA
192 CCAACCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGA
15605557 TCGACCCGATCCCCCT
257 TCGACCCGATCCCCCT
15605573 CTACGTGTTG
Statistics
Matches: 1088, Mismatches: 192, Indels: 56
0.81 0.14 0.04
Matches are distributed among these distances:
343 362 0.33
344 458 0.42
345 8 0.01
346 2 0.00
347 2 0.00
350 1 0.00
351 1 0.00
352 9 0.01
353 113 0.10
354 118 0.11
355 14 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGCGCGCTCAGC
CGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGA
CCCGATCCCCCTACATGCTACCGATCCTACTGTCGCAACCCTCGTCTGGTCTGATCTTAGACTGG
GAATGAACTCCGTATG
Found at i:15604549 original size:159 final size:159
Alignment explanation
Indices: 15604260--15604605 Score: 351
Period size: 159 Copynumber: 2.2 Consensus size: 159
15604250 AACTCCGTAT
* * * * * *
15604260 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGCGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCGCACTCAG
* * ** * * * * * *
15604325 CCGGCTAGGGAGGCATAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCACTGCGTGCTGTCGATC
66 CCGACTAGGGAGGCAGAATGCACAAGCCGGGGATGAGCCCGATCCCCCACTACATGCTGCCGATC
15604390 CCGCTGCCACAAACCTCGATCCGGCTGGG
131 CCGCTGCCACAAACCTCGATCCGGCTGGG
* *
15604419 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCGCACTCA
*
15604483 GCCGACT-GGAGAGGCAGAATGCACAAGCCGGAGGATCGA-CCCGATCCCCC-TTACATGCTGCC
65 GCCGACTAGG-GAGGCAGAATGCACAAGCCGG-GGAT-GAGCCCGATCCCCCACTACATGCTGCC
* * * ** * * *
15604545 GATCCTGCTG-CAGCAACCCTCGGTCTAGTTTGA
127 GATCCCGCTGCCA-CAAACCTCGATCCGGCTGGG
* *
15604578 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCCTATGC
15604606 TTAGATTGGG
Statistics
Matches: 152, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 5 0.03
159 131 0.86
160 15 0.10
161 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCGCACTCAG
CCGACTAGGGAGGCAGAATGCACAAGCCGGGGATGAGCCCGATCCCCCACTACATGCTGCCGATC
CCGCTGCCACAAACCTCGATCCGGCTGGG
Found at i:15604615 original size:26 final size:26
Alignment explanation
Indices: 15604579--15604631 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15604569 CTAGTTTGAT
15604579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15604605 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15604631 C
1 C
15604632 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.