Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 99 of 138
Found at i:15604770 original size:185 final size:185
Alignment explanation
Indices: 15604432--15604782 Score: 399
Period size: 185 Copynumber: 1.9 Consensus size: 185
15604422 TAGACATGGA
*
15604432 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGACTGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACTGGAGAGG
* *
15604497 CAGAATGCACAAGCCGGAGGATCGACCCGATCCCCCTTACATGCTGCCGATCCTGCTGCAGCAAC
66 CAGAATGCACAAGCCGGAGGATCGACCCGATCCCCCCTACATACTGCCGATCCTGCTGCAGCAAC
* * * * *
15604562 CCTCGGTCTAGTTTGATCTTAGAC-TGGGAATGAACTCCGTATGCTTAGATTGGGG
131 CCTAGGTCCAGCTGGAGCTTAGACAT-GGAATGAACTCCGTATGCTTAGATTGGGG
* * * * *
15604617 ATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGGCGGG-GCTCAGCCG-GTCGGAGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGT-GCGGGCACTCAGCCGACT-GGAGA
* * * * * * * *
15604680 GGCATAATGCATAAGTCGG-GGATC-AGCTCGGTCCCCCGCTGCATACTGTCGGTCCTGCTGCCA
64 GGCAGAATGCACAAGCCGGAGGATCGA-CCCGATCCCCC-CTACATACTGCCGATCCTGCTG-CA
* *
15604743 -CAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACT
126 GCAACCCTAGGTCCAGCTGGAGCTTAGACATGGAATGAACT
15604783 ACCTATTCCT
Statistics
Matches: 137, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
183 1 0.01
184 15 0.11
185 113 0.82
186 8 0.06
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (185 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACTGGAGAGG
CAGAATGCACAAGCCGGAGGATCGACCCGATCCCCCCTACATACTGCCGATCCTGCTGCAGCAAC
CCTAGGTCCAGCTGGAGCTTAGACATGGAATGAACTCCGTATGCTTAGATTGGGG
Found at i:15604951 original size:26 final size:26
Alignment explanation
Indices: 15604922--15604974 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15604912 CTGGTCTGAT
*
15604922 CTTAGACTAGGAATCAACTCTGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
* * *
15604948 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
15604974 C
1 C
15604975 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:15605236 original size:343 final size:342
Alignment explanation
Indices: 15603917--15605405 Score: 1540
Period size: 344 Copynumber: 4.3 Consensus size: 342
15603907 TCGGTCCGAT
* * * * * * * *
15603917 CTTAGACTTGGAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * *** * * * * *
15603982 CGATCGAAGAGGCATAATGTGCAAGTCGAGGATCGGTCCGGTCCCCCTCTGCGTGCTACCAGTCC
66 CGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGGTCC
* * * * * * *
15604047 CACTGCCATAACCCTCAGTCCGACTGGGGCTTAGACATGAAATGAACTCCTTATGCTTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * *
15604112 TCCCATGAAACGGGCATGCGGGCGCTCAGCCAACCGGAGAGGCGGACTGCGCAAGCCGGGGATTG
196 -CCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCG
* * * * **
15604177 GCCCGGT-CCCCCTAGCATGCTATCGATCCTACTGTCGCAACCC-TCGATCCGGTCCAATCTTAG
260 ACCCGATCCCCCCTA-CATGCTACCGATCCTACT-TCGCAACCCTTCG-TCTGGTCTGATCTTAG
15604240 ACTGGGAATGAACTCCGTATG
322 ACTGGGAATGAACTCCGTATG
* *
15604261 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGCGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * * ** *
15604326 CGGCTAGG-GAGGCATAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCACTGCGTGCTGTCGATC
66 CGG-TCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGGTC
* *
15604390 CCGCTGCCACAAACCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * *
15604455 ACCCACGAAACGGGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATGCACAAGCCGGAGGATC
195 ACCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGG-GGATC
* * * * * *
15604520 GACCCGATCCCCCTTACATGCTGCCGATCCTGCTGCAGCAACCC-TCGGTCTAGTTTGATCTTAG
259 GACCCGATCCCCCCTACATGCTACCGATCCTACTTC-GCAACCCTTC-GTCTGGTCTGATCTTAG
15604584 ACTGGGAATGAACTCCGTATG
322 ACTGGGAATGAACTCCGTATG
* * *
15604605 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTG-GCGGGGCTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTG-GGCGCTCAG
* * * **
15604669 CCGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCTCGGTCCCCCGCTGCATACTGTCGGTC
65 CCGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGGTC
* * * *
15604734 CTGCTGCCACAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTACCTATTCCTAAGCCA
130 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * ** * * * * *
15604799 ACCCAGGAAATGGGCGTGCGGGTGCTCAGCCGACCAAAGAGGCAGAATGCACATGTCGAGGATCG
195 ACCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCG
* * * * * ** *
15604864 ACCTGATCCCCCATGCGTACTGTCGATCCTACTATCGCAACCCTTTGTCTGGTCTGATCTTAGAC
260 ACCCGATCCCCCCTACATGCTACCGATCCTACT-TCGCAACCCTTCGTCTGGTCTGATCTTAGAC
* * *
15604929 TAGGAATCAACTCTGTATG
324 TGGGAATGAACTCCGTATG
* * *
15604948 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGTGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * *
15605013 CGGTCGGAGAGGCATAAAGCAAAAGTTGGGGATCAGCCCGATCCCCCGCTGCGTGCTACCGGTCC
66 CGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGGTCC
* * * *
15605078 CCCTACCACAACCCTCGGTCCAGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
15605143 CCCACGAAACGAGCGTGTC-GGCACTCAGCTAACCGAAGAGGCAGAATGCGCAAGCTGGGGATCG
196 CCCACGAAACGGGCGTG-CGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCG
* * *
15605207 ACCCGATCCCCCCTACGTGCTACCGATCCTGCTGCCTGTCCTACTGCCATAACCCTT-GATCCGG
260 ACCCGATCCCCCCTACATGCTACCGAT-C--CT-AC--T--T-C-G-C--AACCCTTCG-TCTGG
* * *
15605271 ACAGAT-TTAGACTGGGAATGAACTCTGTATG
311 TCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * *
15605302 CTTAGACAT-GGAATAAACTCCGTCTGCTTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAG
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * *
15605366 TCGGTCGGAGAGGCAGAATGCCTAAG-CTGGTGATCAGCCC
65 CCGGTCGGAGAGGCATAATGCATAAGTC-GGGGATCAGCCC
15605406 CTTCCCTCCT
Statistics
Matches: 956, Mismatches: 163, Indels: 42
0.82 0.14 0.04
Matches are distributed among these distances:
343 367 0.38
344 448 0.47
345 9 0.01
346 2 0.00
347 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
352 1 0.00
353 1 0.00
354 108 0.11
355 16 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGGTCGGAGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCGCTGCGTGCTACCGGTCC
CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGA
CCCGATCCCCCCTACATGCTACCGATCCTACTTCGCAACCCTTCGTCTGGTCTGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:15605314 original size:26 final size:26
Alignment explanation
Indices: 15605277--15605331 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
15605267 CCGGACAGAT
* *
15605277 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
*
15605303 TTAGACAT-GGAATAAACTCCGTCTGC
1 TTAGAC-TGGGAATAAACTCCGTATGC
15605329 TTA
1 TTA
15605332 AGCCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:15606792 original size:158 final size:157
Alignment explanation
Indices: 15606494--15606905 Score: 440
Period size: 158 Copynumber: 2.6 Consensus size: 157
15606484 CATGGGTCAA
* * * ** *
15606494 AATCATAGATTGGGAATGAACTCCGTATGCCTAAGACTACCCACAAAATGAGCGTGCGAGCGCTT
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCAGGAAATGAGCGTGCGAGCGCTC
* * * **
15606559 AGCCGA-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTGCCCCCTCCGTGCTGTCGA
66 AGCCGACT-GGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTGCCCCCTCCATGCTACCGA
* * *
15606623 TCCTGCTGCCACAACCCTCTGTCCAGTCT
130 TCCCGCTGCCACAACCCTCGGT-CAGGCT
* * *
15606652 AATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAGGAAATGAGTGTGCCGA-CGCT
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCAGGAAATGAGCGTG-CGAGCGCT
* * * *
15606716 GAGCCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCTCTCTTCATGCTACC
65 CAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTGCCC-C-CTCCATGCTACC
* *
15606780 GGTCCCG-TGCCACAACCCTCGGTCTGGCT
128 GATCCCGCTGCCACAACCCTCGGTCAGGCT
** * * *
15606809 AGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCC-GCGAAATGAGCGTGCGAGTG
1 A-ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGACAACCCAG-GAAATGAGCGTGCGAGCG
* *
15606872 CTCAGCCGACTAGAGAGGCAGGATGCGCAAGCCG
63 CTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCG
15606906 TCGAACGGGT
Statistics
Matches: 213, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
157 12 0.06
158 183 0.86
159 18 0.08
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCAGGAAATGAGCGTGCGAGCGCTC
AGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTGCCCCCTCCATGCTACCGAT
CCCGCTGCCACAACCCTCGGTCAGGCT
Found at i:15607852 original size:159 final size:159
Alignment explanation
Indices: 15607529--15607887 Score: 375
Period size: 159 Copynumber: 2.3 Consensus size: 159
15607519 AACTCCATAT
* * * *
15607529 GCTTAGACATGGAAT-AACCTCCGTAGGCCTAAGCCAACCCACAAAACGAGCGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAA-CTCCATATGCCTAAGCCAACCCACAAAACGAGAGTGTGGGCGCTCA
* * * * * *
15607593 GCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCCTGTGTGCTGTCAAT
65 GCCAGTCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGATCCCCCCCTGAGTGCTGCCAAT
* * *
15607658 CCTACTACCGCAACCCTCAGTCTGATCTAA
130 CCCACTACCACAACCCTCAGTCTGAGCTAA
* * ** * *
15607688 TCTTAGAC-TGGGAATGAACTCTCAT-TGCCTAAGTCAACCCACGGAACGAGAGTTTGGGCGCTG
1 GCTTAGACAT-GGAATGAACTC-CATATGCCTAAGCCAACCCACAAAACGAGAGTGTGGGCGCTC
* * * * **
15607751 TGCCAGTCGGAGAGGCATAATACGCAAGTCAAGGATCGACCCGATCCCCCTCTGAGTGCTGCCGG
64 AGCCAGTCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGATCCCCCCCTGAGTGCTGCCAA
* * * **
15607816 TCCCGCTTCCATAACCCTCAGTCTG-GCTGGG
129 TCCCACTACCACAACCCTCAGTCTGAGCT-AA
*
15607847 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
15607888 TGAAACGGGC
Statistics
Matches: 161, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
158 5 0.03
159 151 0.94
160 5 0.03
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGAGTGTGGGCGCTCAG
CCAGTCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGATCCCCCCCTGAGTGCTGCCAATC
CCACTACCACAACCCTCAGTCTGAGCTAA
Found at i:15608041 original size:26 final size:26
Alignment explanation
Indices: 15608005--15608057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15607995 CTAGTCTGAT
* *
15608005 CTTAGATTGGGACTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15608031 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15608057 C
1 C
15608058 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15609545 original size:26 final size:26
Alignment explanation
Indices: 15609507--15609559 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15609497 GGCTCAAACT
15609507 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15609533 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15609559 C
1 C
15609560 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15610350 original size:26 final size:26
Alignment explanation
Indices: 15610309--15610361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15610299 CCGGTCCGAT
*
15610309 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
15610335 CTTAGACTAGGG-ATGAACTCCGTATA
1 CTTAGACT-GGGAATGAACTCCGTATA
15610361 C
1 C
15610362 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:15611019 original size:159 final size:157
Alignment explanation
Indices: 15610727--15611219 Score: 368
Period size: 159 Copynumber: 3.1 Consensus size: 157
15610717 CTTAGACATA
* * * * * ** * * *
15610727 GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGTGATCCGTCGAACGGAGA
1 GAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGA
* * * * * ** * * *
15610792 GGCAGAA-ACCGTAAGCTGGGGACCAACCCAGTCCTCTCCT-CTGTGCTGTAGATCCTACTGTCG
65 GACAGAATA-CGTAAGCTGGGGATCAGCCCGGTCC-CCCCTGC-GTGCTGCCGATCCTGCTGCCA
* * *
15610855 TAACCCTTGGTCCGATCCAATCTTAGACTGG
127 CAACCCTCGGTCCGATCCGATCTTAGACTGG
* * *
15610886 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCC-AGCCGGAG
1 GAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGA-CCGAAG
* * * * * * *
15610950 AGGCATAATGCGTAAG-TCGGGGATCATCCCGGTCCCCCTCTGTGTGCTGCCGGTCTTGCTGCCA
64 AGACAGAATACGTAAGCT-GGGGATCAGCCCGGTCCCCC-CTGCGTGCTGCCGATCCTGCTGCCA
* * * **
15611014 CAACCCTCGATCC-AGCTGGGGCTTAGACAT-G
127 CAACCCTCGGTCCGATC-CGATCTTAGAC-TGG
* * * * *
15611045 GAATGAACTACCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTTAGCCGACCGAAGA
1 GAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGA
* * * ***
15611110 GACAGAATACGTAAGCTGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTTGCAA
65 GACAGAATACGTAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAA
* *
15611175 CCCTCGGTCCGGTCTGATCTTAGACTGG
130 CCCTCGGTCCGATCCGATCTTAGACTGG
*
15611203 GAATGAGCTCCTTATGC
1 GAATGAACTCC-TATGC
15611220 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 59, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
157 3 0.01
158 58 0.22
159 195 0.75
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAG
ACAGAATACGTAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAAC
CCTCGGTCCGATCCGATCTTAGACTGG
Found at i:15611229 original size:26 final size:26
Alignment explanation
Indices: 15611193--15611245 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15611183 CCGGTCTGAT
* *
15611193 CTTAGACTGGGAATGAGCTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15611219 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15611245 C
1 C
15611246 CTAAGTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15611590 original size:26 final size:26
Alignment explanation
Indices: 15611561--15611613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15611551 CCAGTCTGAT
15611561 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
* *
15611587 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
15611613 C
1 C
15611614 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15611954 original size:158 final size:157
Alignment explanation
Indices: 15611595--15612250 Score: 570
Period size: 158 Copynumber: 4.1 Consensus size: 157
15611585 TGCTTAGATA
* * * * *
15611595 TGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGCGATCAACCAACCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGA
* * * * ** * * *
15611660 GAGGCAGAAAGCACAAGTCGGGGATCAGGCCGGTCCCCCCTGCGTATTGCCGATCCTGCTGTCGT
66 GAGGAAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGC
*
15611725 AACCCTTGGTCTGATCCGATCCGATCTTAGAC
131 AACCC----TC-GATTCGATCCGATCTTAGAC
* * * *
15611757 TAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCCGAGCAG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAG
* * *
15611822 AGAGGAAGAATGCGCAAG-CTAGGGATC-GACCCGGTCCCCCCTACGTGTTGTCGATCCTGCTGC
65 AGAGGAAGAATGCGCAAGTC-GGGGATCAG-CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
* ** *
15611885 CGCAACCCTCGATTCGGTCTTATCTTAGAT
128 CGCAACCCTCGATTCGATCCGATCTTAGAC
* * * * * *
15611915 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGAGCTGACCGG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAG
* * * * * * **
15611980 AGAGGCATAATGCGCAAGTC-GGGATCAGCTCGATCCCCCTCTGCGTGCT-ACCAGTCCCACTGC
65 AGAGGAAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGA-TCCTGCTGC
* * * **
15612043 CACAACCCTCGA-TCCATCTGGGGCTTAGAC
128 CGCAACCCTCGATTCGATC-CGATCTTAGAC
* * * * *
15612073 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAGCCGGCTAG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAG
* * ** * * *
15612138 AAAGGCAA-AATGCGTAAGTCGGGGATTGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGTTGCC
65 AGAGG-AAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCC
* * *
15612202 GCAACCCTTG-GTCTGATCCGGTCTTAGAC
129 GCAACCCTCGATTC-GATCCGATCTTAGAC
*
15612231 TGGGAATGAACTCTGTATGC
1 T-GGAATGAACTCCGTATGC
15612251 TTAGACTGGG
Statistics
Matches: 396, Mismatches: 83, Indels: 34
0.77 0.16 0.07
Matches are distributed among these distances:
157 22 0.06
158 235 0.59
159 24 0.06
162 3 0.01
163 112 0.28
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGA
GAGGAAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGC
AACCCTCGATTCGATCCGATCTTAGAC
Found at i:15612253 original size:26 final size:26
Alignment explanation
Indices: 15612224--15612276 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15612214 CTGATCCGGT
15612224 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
15612250 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15612276 C
1 C
15612277 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15612448 original size:26 final size:26
Alignment explanation
Indices: 15612419--15612471 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15612409 CCGGTCTGAT
15612419 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15612445 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15612471 C
1 C
15612472 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15613269 original size:355 final size:341
Alignment explanation
Indices: 15612604--15613293 Score: 758
Period size: 355 Copynumber: 2.0 Consensus size: 341
15612594 CCAATCCGAT
* * * * * *
15612604 CTTAGACTAGGATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTTCGGGCACAGAGCC
1 CTTAGACTAGGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCATGCGAGCACACAGCC
* *
15612669 GACCGGATAGGCATAATGCACAAGCCAGGGATCAGCTCGATCCCCTCTGCGTGCTGCCAATCCCG
66 GACCGGAAAGGCATAATGCACAAGCCAGGGATCAGCTCAATCCCCTCTGCGTGCTGCCAATCCCG
* ** *
15612734 CTGCCACAACCCTCGATTTGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACC
131 CTGCCACAACCATCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACC
* * * * * ** * * ** *
15612799 CACGAAACGGGTGTGTGGGCGCTCAGCCGATTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTC
196 CACCAAACGAGCGTGCGGGCGCTCAGCAGACCGAAAAGGCAGAATAAGCAAGCCGGGGATCGATC
* * ** * * *
15612864 CGGTCCCCCTTACGTGCTGCCAATCTTGCTGTTGCAACCCTCGATCTGATCCGATCTTAGATTGG
261 CGGTCCCCCCTACGTGCTGCCAATCCTGCTGTCACAACACTCGATCTGATCCAATCTTAGACTGG
15612929 GAATGAACTCCATATG
326 GAATGAACTCCATATG
*
15612945 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCATGCGAGCACTCAGC
1 CTTAGACTA-GGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCATGCGAGCACACAGC
* ** * *
15613010 CGATCGGAAAGGCATAATGCGTAAGCCGGGGATCAGCTTAATCCCCCTCTGCGTGCTGCCAATCC
65 CGACCGGAAAGGCATAATGCACAAGCCAGGGATCAGCTCAAT-CCCCTCTGCGTGCTGCCAAT--
* * * *
15613075 CACTGTCGGTCCTGCTACCATAATCATC-AGTCCGACTGGGGCTTAGACATGGAATGATCTCCGT
127 C-C---C-G--CTG---CCACAACCATCGA-TCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* * * *
15613139 ATGCCTAAGCCAACCCACCAAATGAGCGTGCGGGTGCTCAGCTAG-CCGAAAAGGTAGAATAAGC
181 ATACCTAAGCCAACCCACCAAACGAGCGTGCGGGCGCTCAGC-AGACCGAAAAGGCAGAATAAGC
* * *
15613203 AAGCCGGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCCTG-TGGTCACAACACTC-AGTCT
245 AAGCCGGGGATCGATCCGGTCCCCCCTACGTGCTGCCAATCCTGCT-GTCACAACACTCGA-TCT
15613266 GATCCAATCTTAGACTGGGAATGAACTC
308 GATCCAATCTTAGACTGGGAATGAACTC
15613294 TGTATGCCTA
Statistics
Matches: 283, Mismatches: 48, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
341 9 0.03
342 83 0.29
343 20 0.07
345 1 0.00
346 1 0.00
349 1 0.00
350 1 0.00
352 3 0.01
354 3 0.01
355 160 0.57
356 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (341 bp):
CTTAGACTAGGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCATGCGAGCACACAGCC
GACCGGAAAGGCATAATGCACAAGCCAGGGATCAGCTCAATCCCCTCTGCGTGCTGCCAATCCCG
CTGCCACAACCATCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACC
CACCAAACGAGCGTGCGGGCGCTCAGCAGACCGAAAAGGCAGAATAAGCAAGCCGGGGATCGATC
CGGTCCCCCCTACGTGCTGCCAATCCTGCTGTCACAACACTCGATCTGATCCAATCTTAGACTGG
GAATGAACTCCATATG
Found at i:15615080 original size:159 final size:157
Alignment explanation
Indices: 15614649--15615143 Score: 425
Period size: 159 Copynumber: 3.1 Consensus size: 157
15614639 CCACTATCGG
** * *
15614649 TCCTGCTATCACAACCCTCGGTTCGACCGGGGCTTAGACATGGAATGCACTCCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * *
15614714 CAACCCACGAAACGAGCGCGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG-TCGAGGA
66 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC-GAGAGGCAGAATGTGCAAGCTCGAGGA
*
15614778 TCACCCGGTCCCCCCTGCGTGCTGTCGA
130 TCACCCGGTCCCCCCTGCGTACTGTCGA
* ** * * * ** * * *
15614806 TCCTGTTGCCGTAACCCTTGGTTGGTCT-GATCTTTGAC-TCGGAATGATCTCCGTATGCATAAG
1 TCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
* * * * * * ** * *
15614869 TCAACCCATGAAACAAGCGTACGGGCACTGAGCTGATCGAAGAGGCATAATGTGTAAGCT-G-GG
65 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCG-AGAGGCAGAATGTGCAAGCTCGAGG
*
15614932 AATCGACCCGGTCCCCTTCTGCGTACTGTC-A
129 -ATC-ACCCGGTCCCC-CCTGCGTACTGTCGA
* * * *
15614963 GTCTTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 -TCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
*
15615028 CCAACCCATGAAACG-GACGTGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATGTGCAAGC-C-AG
65 CCAACCCATGAAACGAG-CGTGCGGGCGCTCAGCCGGCC-GAGAGGCAGAATGTGCAAGCTCGA-
** ** *
15615090 GGATTGGCCCGGTCCCCCCTGTATGCTG-CTGA
127 GGA-TCACCCGGTCCCCCCTGCGTACTGTC-GA
* *
15615122 TCCTGCTGTCGCAACCCTCGGT
1 TCCTGCTGCCACAACCCTCGGT
15615144 CCGGTCTGAT
Statistics
Matches: 254, Mismatches: 67, Indels: 33
0.72 0.19 0.09
Matches are distributed among these distances:
155 4 0.02
156 73 0.29
157 33 0.13
158 56 0.22
159 83 0.33
160 5 0.02
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAGAGGCAGAATGTGCAAGCTCGAGGAT
CACCCGGTCCCCCCTGCGTACTGTCGA
Found at i:15621972 original size:26 final size:26
Alignment explanation
Indices: 15621935--15621986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15621925 GCTCAAAATT
*
15621935 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
15621961 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
15621987 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:15622442 original size:160 final size:157
Alignment explanation
Indices: 15621960--15622455 Score: 480
Period size: 157 Copynumber: 3.1 Consensus size: 157
15621950 ACTCCGTATG
* * *
15621960 CTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATGAAACGAGCGTG-TAGGTGCCCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCT-GGTGCTCAG
* * * * *
15622024 CCGACCGGAGAGGCAAAATGCGTAAGTCGGGGATCAGCCTGGTCCCCCCTGCATGCTATCGATCT
65 CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCT-GCGATCC
* *
15622089 TGCTG-TCGCAACCCTCGATCTGGTTTGAT
129 TGCTGCT-GCAACCCTCGATCCGGTTCGAT
* * * * *
15622118 CTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCCACA-AAACGAGCGTGCGGGTGCTGAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA-AGAAACGAGCGTGCTGGTGCTCAG
* * * * *
15622181 CCGACCGAAGAGGCATAATGCGCAAGTTGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGTC
65 CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTG-CGATC
* ** * * * **
15622246 CCGCTGCCACAACCCTCAATCCGGCTGGGG
128 CTGCTGCTGCAACCCTCGATCCGGTTCGAT
* * * * *
15622276 CTTAGACATGAAATGAACTCCTTATGCCTAAGCCAACCCAAGAAATGGGGCGTGCTGGCGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAA-CGAGCGTGCTGGTGCTCAG
** * * * * *
15622341 CCGGTCGGAGAGGCAGAATTCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCAGATCC
65 CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGC-GATCC
* *
15622406 TGACTGCTGCAACCCTCGGTCCGATTCGAT
129 TG-CTGCTGCAACCCTCGATCCGGTTCGAT
*
15622436 CTTAGAC-TACGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
15622456 TGTATGCTTA
Statistics
Matches: 268, Mismatches: 59, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 89 0.33
158 46 0.17
159 46 0.17
160 87 0.32
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCTGGTGCTCAGC
CGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCGATCCTG
CTGCTGCAACCCTCGATCCGGTTCGAT
Found at i:15622840 original size:355 final size:343
Alignment explanation
Indices: 15622118--15622915 Score: 958
Period size: 355 Copynumber: 2.3 Consensus size: 343
15622108 CTGGTTTGAT
* * ** *
15622118 CTTAGACTGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCC
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCACTCAGCC
* * * * * *
15622183 GACCGAAGAGGCATAATGCGCAAGTTGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGTCCC
65 GGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTACATGCTGCCGGTCCC
* *
15622248 GCTGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGAAATGAACTCCTTATGCCTAAGCCAAC
130 GCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
15622313 CCAAGAAATGGGGCGTGCTGGCGCTCAGCCGGTCGGAGAGGCAGAATTCGCAAGCCGGGGATCGG
195 CCAAGAAATGGAGCGTGCGGGCACTCAGCAGGCCAGAGAGGCAGAATTCGCAAGCCAGGGATCGA
* * * *
15622378 CCCGATCCCCCCTGCGTGCTGCAGATCCTGACTGCTGCAACCCTCGGTCCGATTCGATCTTAGAC
260 CCCGATCCCCCCTGCGTGCTACAGATCCTGACTGCCGCAACCCTCGGTCCGATCCGATCTTAGAA
*
15622443 TACGAATGAACTCTGTATG
325 TACGAATGAACTCCGTATG
* * *
15622462 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCACTCAGC
*
15622527 CGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCTCGATCCCCTTCTGCGTGCTATCTATCC
64 CGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGAT-CCC--C--C-T-CTA-C-AT--
* * ** *
15622592 CGCTGCCGGTCCTGCTGCCACAACTCTCCGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
118 -GCTGCCGGTCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGAAATGAACTCCGTA
* *
15622657 TGCCTAAGCCAACCCACGAAAT-GAGCGTGCGGGCACTCAGCAGGCCAGAGAGGCAGAATAT-GG
182 TGCCTAAGCCAACCCAAGAAATGGAGCGTGCGGGCACTCAGCAGGCCAGAGAGGCAGAAT-TCGC
* * *
15622720 AAGCCAGGTATCGACCCGATCCCCCCTGCGTGCTACCGATCCTG-TTGCCGCAACCCTTC-GTCC
246 AAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACAGATCCTGACTGCCGCAACCC-TCGGTCC
**
15622783 GATCCGATCTTAGAATGGGAATGAACTCCGTATG
310 GATCCGATCTTAGAATACGAATGAACTCCGTATG
* *
15622817 CTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGAATG-GGCACTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG--TGCGGCACTCAG
* * *
15622881 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATC
63 CCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATC
15622916 GACCCAGTCC
Statistics
Matches: 385, Mismatches: 51, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
344 8 0.02
345 84 0.22
346 3 0.01
348 1 0.00
350 1 0.00
351 1 0.00
352 3 0.01
353 1 0.00
354 1 0.00
355 128 0.33
356 74 0.19
357 80 0.21
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (343 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCACTCAGCCG
GCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTACATGCTGCCGGTCCCG
CTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
CAAGAAATGGAGCGTGCGGGCACTCAGCAGGCCAGAGAGGCAGAATTCGCAAGCCAGGGATCGAC
CCGATCCCCCCTGCGTGCTACAGATCCTGACTGCCGCAACCCTCGGTCCGATCCGATCTTAGAAT
ACGAATGAACTCCGTATG
Found at i:15623211 original size:159 final size:155
Alignment explanation
Indices: 15622817--15623318 Score: 459
Period size: 159 Copynumber: 3.2 Consensus size: 155
15622807 ACTCCGTATG
* * *** *
15622817 CTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGAATGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
15622882 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTGTGTGCTGTCGATCCTG
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTATGCTATCGATCCCA
* * *
15622947 CTGTCGCAACCCTCGGTCTGGTCCGA
130 CTGTCACAACCCTCGGTCCGCTCCGA
* * * * * *
15622973 TCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCATGAAACGAGCATGCACGGGTGTTG
1 -CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG--CGGGCGCTC
* * * * * * *
15623038 AGTCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACATGTTATCGG
62 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCT--ATGCTATCGA
**
15623103 TCCCACTGTCACAACCCTCGGTCCGACTGGGGA
125 TCCCACTGTCACAACCCTCGGTCCG-CT-CCGA
* *
15623136 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15623200 CGGTTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGGTTCCCCCTGC-GTGCTGTCGATCC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGG-TCCCCCT-CTATGCTATCGATCC
* * * * * *
15623264 TACTGCCGCAACCCTCGGTCAGATCTGA
128 CACTGTCACAACCCTCGGTCCGCTCCGA
15623292 TCTTAGACTAGGAATGAACTCCGTATG
1 -CTTAGACT-GGAATGAACTCCGTATG
15623319 GTTAGACTGG
Statistics
Matches: 272, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 46 0.17
158 49 0.18
159 90 0.33
160 7 0.03
161 73 0.27
162 2 0.01
163 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTATGCTATCGATCCCAC
TGTCACAACCCTCGGTCCGCTCCGA
Found at i:15623334 original size:26 final size:26
Alignment explanation
Indices: 15623294--15623345 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15623284 AGATCTGATC
15623294 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
* * *
15623320 TTAGACTGGGGATGAACTTCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
15623346 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:15624383 original size:158 final size:157
Alignment explanation
Indices: 15624029--15624495 Score: 420
Period size: 158 Copynumber: 3.0 Consensus size: 157
15624019 AACTCCACAT
* * *
15624029 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTA-GCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
15624094 CCAGCTGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCTTGCTGTCGATCC
65 CCAGCCGAAGAAGCAGAATGCACAAGCCAAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
*
15624159 TACTGCCACAACCCTCGATCCAGTCTAA
130 TACTGCCACAACCCTCGATCCAGGCTAA
* * * * * *
15624187 TCCTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGTCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCT-AGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
15624251 GCCGGCCGAATAAGCATAATGCGCAAGCCAAGGATCTG-CCCGATCCCCTTCTGCGTGCTGCCGG
64 GCCAGCCGAAGAAGCAGAATGCACAAGCCAAGGATC-GACCCGATCCCC-CCTGCGTGCTGCCGA
* * * * **
15624315 TCCTGCTGGCACAACCCTCGGT-CTGGCTGGG
127 TCCTACTGCCACAACCCTCGATCCAGGCT-AA
* * * * *
15624346 GCTTAGACATCGAATGAACTCCCTATGCCTAGCCAACCCATGAAATGAGCGTGCGGGTGCTCCAT
1 GCTTAGACATGGAATGAACTCCATATGCCTAGCCAACCCATGAAACGAGCGTGCGGGCGCT-CAG
* * * * ** * * * *
15624411 CGA-CCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCC
65 CCAGCCGAAGAAGCAGAATGCACAAGCCAAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
* * **
15624475 CACTACCGTAACCCTCGATCC
130 TACTGCCACAACCCTCGATCC
15624496 GATCCGATCT
Statistics
Matches: 241, Mismatches: 59, Indels: 18
0.76 0.19 0.06
Matches are distributed among these distances:
157 28 0.12
158 155 0.64
159 57 0.24
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGAAGAAGCAGAATGCACAAGCCAAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCT
ACTGCCACAACCCTCGATCCAGGCTAA
Found at i:15624850 original size:351 final size:342
Alignment explanation
Indices: 15624190--15624881 Score: 806
Period size: 351 Copynumber: 2.0 Consensus size: 342
15624180 AGTCTAATCC
* *
15624190 TAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGTCGCTGAGCCG
1 TAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGTCGCTCAGCCA
* * * * *
15624255 GCCGAATAAGCATAATGCGCAAGCCAAGGATCTGCCCGATCCCCTTCTGCGTGCTGCCGGTCCTG
66 ACCGAAGAAGCATAATGCACAAGCCAAGGATCAGCCCGATCCCCTTCTGCGTGCTACCGGTCCTG
* *
15624320 CTGGCACAACCCTCGGTCTGGCTGGGGCTTAGACATCGAATGAACTCCCTATGCCTAGCCAACCC
131 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATCGAATGAACTCCCTATGCCTAGCCAACCC
* * * * * * * * *
15624385 ATGAAATGAGCGTGCGGGTGCTCCATCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCC
196 ACGAAACGAGCATGCAGGCGATCCAGCGACCGAAGACGCAGAATGCGCAAGTCGGGGATCGACCC
* * * * *
15624450 GGTCCCCCCTGTGTGCTGTCGATCCCACTACCGTAACCCTCGATCCGATCCGATCTTAGATTGGG
261 GGTCCCCCCTGCGTGCTATCGATCCCACTACCGTAAACCTCGATCCGATCCAATCTTAGACTGGG
15624515 AATGAACTC-GTATGCT
326 AATGAACTCTGTATGCT
15624531 TAGACTCGGG-ATGAACTCC-TATGCATAAGTCAACCCATGAAACGAGC-TGCGGGT-GCTCAGC
1 TAGACT-GGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGC-GGTCGCTCAGC
* ** *
15624592 CAACCGGAGAAGCATAATGCACAAGCCGGGGATCAGCTCGATCCCTCTCTGCATGCAACTGATCC
64 CAACCGAAGAAGCATAATGCACAAGCCAAGGATCAGCCCGATCCC-CT-T-C-TG---C-G-T--
* ***
15624657 CGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTTGTA
118 -GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATCGAATGAACTCCCTA
* * *
15624722 TGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGAT-CAGCTGGCTGGAGACGCAGAATGCGCA
182 TGCCT-AGCCAACCCACGAAACGAGCATGCAGGCGATCCAGC-GACCGAAGACGCAGAATGCGCA
* * ** ** *
15624786 AG-CTGGGGATCGACCTGGTCCCCCTTGCGTGCTATCGATCCTGCTGTCG-AAACCTCGGTCCGA
245 AGTC-GGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCCACTACCGTAAACCTCGATCCGA
15624849 TCCAATCTTAGACTGGGAATGAACTCTGTATGC
309 TCCAATCTTAGACTGGGAATGAACTCTGTATGC
15624882 ATAAGTCAAC
Statistics
Matches: 292, Mismatches: 41, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
339 45 0.15
340 33 0.11
341 16 0.05
342 4 0.01
343 2 0.01
346 1 0.00
347 1 0.00
348 1 0.00
351 102 0.35
352 87 0.30
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (342 bp):
TAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGTCGCTCAGCCA
ACCGAAGAAGCATAATGCACAAGCCAAGGATCAGCCCGATCCCCTTCTGCGTGCTACCGGTCCTG
CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATCGAATGAACTCCCTATGCCTAGCCAACCC
ACGAAACGAGCATGCAGGCGATCCAGCGACCGAAGACGCAGAATGCGCAAGTCGGGGATCGACCC
GGTCCCCCCTGCGTGCTATCGATCCCACTACCGTAAACCTCGATCCGATCCAATCTTAGACTGGG
AATGAACTCTGTATGCT
Found at i:15625089 original size:158 final size:158
Alignment explanation
Indices: 15624658--15625112 Score: 454
Period size: 157 Copynumber: 2.9 Consensus size: 158
15624648 AACTGATCCC
* *
15624658 GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTTGTAT
1 GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTAT
* * ** * * *
15624723 GCCTAAGCCAACCCACGAAACGAGCATGCAGGCGATCAGCTGGCTGGAGACGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACGCAAG
15624788 CTGGGGATCGACCTGGTCCCCCTTGCGT
131 CTGGGGATCGACCTGGTCCCCCTTGCGT
* * * ****
15624816 GCTATCGATCCTGCTGTCGA-AA-CCTCGGTCCGA-TCCAATCTTAGAC-TGGGAATGAACTCTG
1 GCTACCGGTCCTGCTG-CCACAACCCTCGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCTG
* * * * * * ** * * *
15624877 TATGCATAAGTCAACCCATGAAATGAGCGTGCTGGCACAAAGCCAACCGAAGAGGCATAATACGC
63 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACGC
* * *
15624942 ATGC-GGGGATCCGTCC-GGTCCCCCTTTGTGT
128 AAGCTGGGGAT-CGACCTGGTCCCCC-TTGCGT
* ** **
15624973 GCTGCCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTAT
* * * * *
15625038 GCCTAAGCCAACTCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACGCAAG
*
15625103 CCGGGGATCG
131 CTGGGGATCG
15625113 GCCCGATCGC
Statistics
Matches: 229, Mismatches: 58, Indels: 20
0.75 0.19 0.07
Matches are distributed among these distances:
156 18 0.08
157 101 0.44
158 100 0.44
159 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACGCAAG
CTGGGGATCGACCTGGTCCCCCTTGCGT
Found at i:15625133 original size:158 final size:158
Alignment explanation
Indices: 15624658--15625136 Score: 466
Period size: 158 Copynumber: 3.0 Consensus size: 158
15624648 AACTGATCCC
* *
15624658 GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTTGTAT
1 GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTAT
* * ** * *
15624723 GCCTAAGCCAACCCACGAAACGAGCATGCAGGCGATCAGCTGGCTGGAGACGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAG
* * *
15624788 CTGGGGATCGACCTGGTCCCCCTTGCGT
131 CCGGGGATCGGCCCGGTCCCCCTTGCGT
* * * ****
15624816 GCTATCGATCCTGCTGTCGA-AA-CCTCGGTCCGA-TCCAATCTTAGAC-TGGGAATGAACTCTG
1 GCTACCGGTCCTGCTG-CCACAACCCTCGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCTG
* * * * * * ** * * * *
15624877 TATGCATAAGTCAACCCATGAAATGAGCGTGCTGGCACAAAGCCAACCGAAGAGGCATAATACGC
63 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGC
* * * *
15624942 ATG-CGGGGATCCGTCCGGTCCCCCTTTGTGT
128 AAGCCGGGGATCGGCCCGGTCCCCC-TTGCGT
* ** **
15624973 GCTGCCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTAT
* * * *
15625038 GCCTAAGCCAACTCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAG
* *
15625103 CCGGGGATCGGCCCGATCGCCCC-CGCGT
131 CCGGGGATCGGCCCGGTC-CCCCTTGCGT
15625131 GCTACC
1 GCTACC
15625137 AATCTTGCTG
Statistics
Matches: 243, Mismatches: 68, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
156 20 0.08
157 96 0.40
158 105 0.43
159 18 0.07
160 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAG
CCGGGGATCGGCCCGGTCCCCCTTGCGT
Found at i:15625207 original size:26 final size:26
Alignment explanation
Indices: 15625171--15625223 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15625161 TCGGTCCGAT
15625171 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
15625197 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15625223 C
1 C
15625224 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15630023 original size:26 final size:26
Alignment explanation
Indices: 15629994--15630046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15629984 TCGGTCTGAT
*
15629994 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15630020 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15630046 C
1 C
15630047 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15630402 original size:26 final size:26
Alignment explanation
Indices: 15630373--15630424 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15630363 CCGGTACGAT
*
15630373 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
15630399 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
15630425 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:15630924 original size:26 final size:26
Alignment explanation
Indices: 15630874--15630926 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15630864 CCAGTCTGAT
**
15630874 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
15630900 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
15630926 C
1 C
15630927 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:15631633 original size:26 final size:26
Alignment explanation
Indices: 15631595--15631645 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15631585 GGCTCAAAAT
15631595 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
15631621 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
15631646 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:15632124 original size:26 final size:26
Alignment explanation
Indices: 15632095--15632147 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15632085 CCGGTCCAAT
15632095 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCGTATG
15632121 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGGATGAACTCCGTATG
15632147 C
1 C
15632148 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTATG
Found at i:15632481 original size:170 final size:172
Alignment explanation
Indices: 15632293--15632604 Score: 398
Period size: 174 Copynumber: 1.8 Consensus size: 172
15632283 CTAGTTGGGG
* * *
15632293 CTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAATGA-ACGTACGGGCACTTAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGACGTACGGGCACTCAA
* * *
15632357 CCGGCCGGAGAGGTAGAATGCTCAAGCCAGGGATCTG-CCCGGTCCCCC-CTGTGTGCTGCCAAT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATC-GACCCGGTCCCCCACTGCGTGCTGCCAAT
15632420 CCTGCTGCTGGTCCTGCTGCTGCAACCCTCGATCTGGTCTGAC
130 CCTGCTGCTGGTCCTGCTGCTGCAACCCTCGATCTGGTCTGAC
* * * **
15632463 CTTAGAC-TGGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAATGAGCGTGCGTGCGGGTGC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA--G-ACGTACGGGCAC
** * * *
15632527 TCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCACTGCGTGCTGTC
62 TCAACCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCACTGCGTGCTGCC
*
15632592 GATCCTGCTGCTG
127 AATCCTGCTGCTG
15632605 TAACCCTCAG
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
169 1 0.01
170 43 0.36
173 1 0.01
174 51 0.43
175 22 0.19
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (172 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGACGTACGGGCACTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCACTGCGTGCTGCCAATC
CTGCTGCTGGTCCTGCTGCTGCAACCCTCGATCTGGTCTGAC
Found at i:15632724 original size:158 final size:157
Alignment explanation
Indices: 15632431--15632960 Score: 507
Period size: 158 Copynumber: 3.3 Consensus size: 157
15632421 CTGCTGCTGG
* * * * *
15632431 TCCTGCTGCTGCAACCCTCGATCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAGGC
1 TCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGC
* **
15632496 CAACCCACGAAATGAGCGTGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGG
66 CAACCCACGAAATGA--GT--GTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCC-G
* *
15632561 GGATCGACCCGGTCCCCCACTGCGTGCTGTCGA
126 GGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGA
* * **
15632594 TCCTGCTGCTGTAACCCTC-AGTCTGGTCCAATCTTAGACTGGGAA-GAACTTCGCATGCCTAAG
1 TCCTGCTGCTGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTTCGCATGCCTAAG
* * * * * *
15632657 TCAACCCACGAAATGAATGTGCGGGCGTTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGA
65 CCAACCCACGAAATGAGTGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCC-GGGA
* * *
15632722 TCGGCTCGATCCCCCTCTGCGTGCTGCCGG
129 TCGGCTCGGTCCCCC-CTGCGTGCTGTCGA
* *** ** * **
15632752 TCCCGCTGCCATAACCCTCGATCCGG-CTGGGGCTTAGACAT-GGAATGAAC-TCCCTACACCTA
1 TCCTGCTGCTGCAACCCTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTTCGC-ATGCCTA
* * * *
15632814 AGCCAACCCATGAAATGGGTGTGCGGGCACTCAGTCAACCGGAGAGGCAGAATGCGCAAGCCGAG
63 AGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCG-G
* * *
15632879 TATCGGCTCGGACCCCCCTGCGTGCTGTTGA
127 GATCGGCTCGGTCCCCCCTGCGTGCTGTCGA
* *
15632910 TCCTGCTG-TGGCAACCCTC-AGTCCGGTCTTATCTTAGATTGGGAATGAACT
1 TCCTGCTGCT-GCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACT
15632961 CCGTATGCTT
Statistics
Matches: 297, Mismatches: 58, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 143 0.48
159 80 0.27
160 1 0.00
162 31 0.10
163 39 0.13
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
TCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGC
CAACCCACGAAATGAGTGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGATC
GGCTCGGTCCCCCCTGCGTGCTGTCGA
Found at i:15632971 original size:26 final size:26
Alignment explanation
Indices: 15632942--15632994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15632932 CCGGTCTTAT
*
15632942 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15632968 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15632994 C
1 C
15632995 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15633877 original size:26 final size:26
Alignment explanation
Indices: 15633848--15633900 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15633838 CCGATCCAAT
15633848 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
* *
15633874 CTTAGACATGGAATTAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
15633900 C
1 C
15633901 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15634383 original size:26 final size:26
Alignment explanation
Indices: 15634347--15634399 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15634337 CTGGTCTAAT
*
15634347 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15634373 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15634399 C
1 C
15634400 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15636116 original size:26 final size:26
Alignment explanation
Indices: 15636087--15636139 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15636077 CCAGTCCAAT
15636087 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
* *
15636113 CTTAGACTAGGGTTGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
15636139 C
1 C
15636140 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:15636286 original size:184 final size:184
Alignment explanation
Indices: 15635942--15636289 Score: 428
Period size: 184 Copynumber: 1.9 Consensus size: 184
15635932 AGACGTGGAA
* * * *
15635942 TGAACTCCCTATGCCAAAGCCAACCCACGAAACAGGCGTACGGGCACTCAGTCGGTCGGAGAGGC
1 TGAACTCCCTATGCCAAAGCCAACCCACGAAACAAGCGTACAGGCACTCAGTCGGCCAGAGAGGC
* * * * * *
15636007 AGAATGTGTAAACTGGGGGTCAGCCCGATCCCCCCTGCGTGCTTTCGATCCTGCTGCCGCAACCC
66 AGAATGCGCAAACTGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCC
* *
15636072 TCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGT
131 TCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGT
* * * * * * **
15636126 TGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCAGGTGCTCAGTCGGCCAGAGAGGC
1 TGAACTCCCTATGCCAAAGCCAACCCACGAAACAAGCGTACAGGCACTCAGTCGGCCAGAGAGGC
* * * * *
15636191 ATAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTATTGCTGCAACCG
66 AGAATGCGCAAACTGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCC
* * *
15636256 TCAGTCC-GATTCGATCTTATACTAGGAATGAACT
131 TCAGTCCAG-TCCAATCTTAGACTAGGAATGAACT
15636290 GCGTATGCCT
Statistics
Matches: 135, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
183 1 0.01
184 134 0.99
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
TGAACTCCCTATGCCAAAGCCAACCCACGAAACAAGCGTACAGGCACTCAGTCGGCCAGAGAGGC
AGAATGCGCAAACTGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCC
TCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGT
Found at i:15636602 original size:159 final size:156
Alignment explanation
Indices: 15636126--15637175 Score: 514
Period size: 159 Copynumber: 6.6 Consensus size: 156
15636116 AGACTAGGGT
** * * * **
15636126 TGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCAGGTGCTCAGTCGGCCAGAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGC
* * * * * *
15636191 ATAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTATTGCTGCAACCG
66 ATAATGCGCAAGCCGGGGATC-ACCCGATCCCCCCTGCGTGCTGACGATCCT-CTACCGCAACCC
* * *
15636256 TC-AGTCCGAT-TCGATCTTATACTAGGAA
129 TCGA-TCTGATCTAGATCTTAGACT-GGAA
* * * * * * *
15636284 TGAACTGCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAGCCGATC-GAAGTGG
1 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAG-AGAGG
** * * * * * *
15636348 CATAACACGCAAGCCGGGGAACCACCCGGTCCCCTTCTGTGAGCT-ACCGAT-CTCGTAGCCACA
65 CATAATGCGCAAGCCGGGG-ATCACCCGATCCCC-CCTGCGTGCTGA-CGATCCTC-TA-CCGCA
* * **
15636411 ACACTCGGTCTGA-CTAGGGCTTAGACATGGAA
125 ACCCTCGATCTGATCTAGATCTTAGAC-TGGAA
* *
15636443 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGATCAGAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGC
* * * * *
15636508 AGAATGCACAAGTCGGGGATCAGCCCGATCCCACCCTACGTGCTGACGATCCTGCTACCGTAACC
66 ATAATGCGCAAGCCGGGGATCA-CCCGATCCC-CCCTGCGTGCTGACGATCCT-CTACCGCAACC
*
15636573 CTCGATCTGATCT-GATTTTAGACTGGGAA
128 CTCGATCTGATCTAGATCTTAGACT-GGAA
* * * * * * *
15636602 TGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCATTCGGGCACTGAGCCGATCGGAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGC
**** * * * * *
15636667 ATAATGCGCAAGCCGGGGATCGGTTTGATCCCCCTCTGCGTCCTGTCGATCC-CATTGCCACAGC
66 ATAATGCGCAAGCCGGGGATC-ACCCGATCCCCC-CTGCGTGCTGACGATCCTC--TACCGCAAC
* * **
15636731 CCTCGATCTG-GCTGGGGCTTAGACATGGAA
127 CCTCGATCTGATCTAGATCTTAGAC-TGGAA
* * * * * * *
15636761 TGAACTCCCG-ATCCCTAAGCCAACCCACGAAAC-AGGCGTACAGGTGCTCCA-CCGATC-GAAA
1 TGAACT-CCGTATGCCTAAGTCAACCCATGAAACGA-GCGTGCGGGCGCT-CAGCCGATCAG-AG
* * * ** * * * **
15636822 AGGTAGAATACGCAAGTTGGGGATCGATCC-AGTCCCCCCTACGTACT-ACCGATCCTGCTGTCG
62 AGGCATAATGCGCAAGCCGGGGATC-ACCCGA-TCCCCCCTGCGTGCTGA-CGATCCT-CTACCG
* ** * * *
15636885 TAACTTTCGGTCCGGTCT-GATCTTAGACTGGGAA
123 CAACCCTCGATCTGATCTAGATCTTAGACT-GGAA
* * ** * * * * * *
15636919 TGAACTTCATATGCCTAAGTCAACCCACAAAACGAGCATGCAGGTGCTTAGCCGGTCGGAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGC
* * ** *
15636984 ATAATGCGCAAGCCGAGGATCAGTCTAATCCCCTTCTACGTGCTGTCAATCCCGCTGCCGATCCT
66 ATAATGCGCAAGCCGGGGATCA-CCCGATCCCC--C--C-TGC-G----T---GCTGACGATCCT
* * * ** *
15637049 GCTACCACAGCCCTCGATCCGA-CTAGGGCTTAGAGATGGAA
117 -CTACCGCAACCCTCGATCTGATCTAGATCTTAGA-CTGGAA
* * * * ** * *
15637090 TGAACTCCGTACGCCTAAGCCAACCCATAAAATGAGCGTGCCAGCACTCAGCCGATCGGAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGC
* * *
15637155 AGAATGCACAAGCCGAGGATC
66 ATAATGCGCAAGCCGGGGATC
15637176 GGCCTGGTGC
Statistics
Matches: 672, Mismatches: 165, Indels: 97
0.72 0.18 0.10
Matches are distributed among these distances:
157 6 0.01
158 197 0.29
159 340 0.51
160 16 0.02
161 1 0.00
162 1 0.00
163 2 0.00
164 1 0.00
168 1 0.00
170 2 0.00
171 104 0.15
172 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGC
ATAATGCGCAAGCCGGGGATCACCCGATCCCCCCTGCGTGCTGACGATCCTCTACCGCAACCCTC
GATCTGATCTAGATCTTAGACTGGAA
Found at i:15636752 original size:318 final size:317
Alignment explanation
Indices: 15636126--15637175 Score: 958
Period size: 318 Copynumber: 3.3 Consensus size: 317
15636116 AGACTAGGGT
* ** * * **
15636126 TGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCAGGTGCTCAGTCGGCCAGAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGATCAGAGAGGC
* * * * ** * *
15636191 ATAATGCGCAAG-CTGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTATTGCTGCAACC
66 AGAATGCACAAGTC-GGGGATCAACCCGATCCCCCCTACGTGCTGACGATCCTGCTGCCGTAACC
* * * * *
15636255 GTC-AGTCCGAT-TCGATCTTATACTAGGAATGAACTGC-GTATGCCTAAGTCAACCCACGAAAT
130 CTCGA-TCCGATCT-GATCTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCAAGAAAC
* * * * ** * * * *
15636317 GAGCGTGCGGGTGTTGAGCCGATCGAAGTGGCATAACACGCAAGCCGGGGAACCA-CCCGGTCCC
192 GAGCATGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGG-ATCAGTCTGATCCC
* * ** * * * * * *
15636381 CTTCTGTGAGCTACCGATCTCGTAGCCACAACACTCGGTCTGACTAGGGCTTAGACATGGAA
256 CTTCTGCGTGCTGTCGATCCCATTGCCACAGCCCTCGATCTGACTAGGGCTTAGACATGGAA
* *
15636443 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGATCAGAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGATCAGAGAGGC
* *
15636508 AGAATGCACAAGTCGGGGATCAGCCCGATCCCACCCTACGTGCTGACGATCCTGCTACCGTAACC
66 AGAATGCACAAGTCGGGGATCAACCCGATCCC-CCCTACGTGCTGACGATCCTGCTGCCGTAACC
* *
15636573 CTCGATCTGATCTGATTTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAG
130 CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAG
* ** * * *
15636638 CATTCGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGTTTGATCCCCCTC
195 CATGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGTCTGATCCCCTTC
* * *
15636703 TGCGTCCTGTCGATCCCATTGCCACAGCCCTCGATCTGGCTGGGGCTTAGACATGGAA
260 TGCGTGCTGTCGATCCCATTGCCACAGCCCTCGATCTGACTAGGGCTTAGACATGGAA
* * * * *
15636761 TGAACTCCCG-ATCCCTAAGCCAACCCACGAAAC-AGGCGTACAGGTGCTCCA-CCGATC-GAAA
1 TGAACT-CCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCAGGCGCT-CAGCCGATCAG-AG
* * * * * * * *
15636822 AGGTAGAATACGCAAGTTGGGGATCGATCC-AGTCCCCCCTACGTACT-ACCGATCCTGCTGTCG
62 AGGCAGAATGCACAAGTCGGGGATCAACCCGA-TCCCCCCTACGTGCTGA-CGATCCTGCTGCCG
** * * *
15636885 TAACTTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-TCATATGCCTAAGTCAACCCACA-
125 TAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCA-AG
* * * * *
15636948 AAACGAGCATGCAGGTGCTTAGCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGTCTAAT
188 AAACGAGCATGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGTCTGAT
* * *
15637013 CCCCTTCTACGTGCTGTCAATCCCGCTGCCGATCCTGCTACCACAGCCCTCGATCCGACTAGGGC
253 CCCCTTCTGCGTGCTGTCGAT----C--CC-AT--TG---CCACAGCCCTCGATCTGACTAGGGC
*
15637078 TTAGAGATGGAA
306 TTAGACATGGAA
* * * * *
15637090 TGAACTCCGTACGCCTAAGCCAACCCATAAAATGAGCGTGCCA-GCACTCAGCCGATCGGAGAGG
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-CAGGCGCTCAGCCGATCAGAGAGG
* *
15637154 CAGAATGCACAAGCCGAGGATC
65 CAGAATGCACAAGTCGGGGATC
15637176 GGCCTGGTGC
Statistics
Matches: 592, Mismatches: 110, Indels: 50
0.79 0.15 0.07
Matches are distributed among these distances:
316 2 0.00
317 237 0.40
318 240 0.41
319 7 0.01
321 1 0.00
323 2 0.00
324 2 0.00
326 2 0.00
328 5 0.01
329 90 0.15
330 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (317 bp):
TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGATCAGAGAGGC
AGAATGCACAAGTCGGGGATCAACCCGATCCCCCCTACGTGCTGACGATCCTGCTGCCGTAACCC
TCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGC
ATGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGTCTGATCCCCTTCT
GCGTGCTGTCGATCCCATTGCCACAGCCCTCGATCTGACTAGGGCTTAGACATGGAA
Found at i:15636980 original size:317 final size:318
Alignment explanation
Indices: 15636427--15637175 Score: 764
Period size: 317 Copynumber: 2.3 Consensus size: 318
15636417 GGTCTGACTA
* * * *
15636427 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTC
* * * * *
15636492 AGTCGATCAGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCACCCTACGTGCTGACGA
66 AGCCGATCAGAAAGGCAGAATACACAAGTCGGGGATCAGCCAGATCCCACCCTACGTACTGACGA
* * *
15636557 TCCTGCTACCGTAACCCTCGATCTGATCTGATTTTAGACTGGGAATGAACTCTGTATGCCTAAGT
131 TCCTGCTACCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGT
* * *
15636622 CAACCCAAGAAACGAGCATTCGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGAT
196 CAACCCAAGAAACGAGCATGCAGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGAT
* * * * *
15636687 CGGTTTGATCCCCCTCTGCGTCCTGTCGATCCCATTGCCACAGCCCTCGATCTGGCTG
261 CAGTCTAATCCCCCTCTACGTCCTGTCAATCCCATTGCCACAGCCCTCGATCTGGCTG
*
15636745 GGGCTTAGACATGGAATGAACTCCCG-ATCCCTAAGCCAACCCACGAAAC-AGGCGTACAGGTGC
1 GGGCTTAGACATGGAATGAACT-CCGTATCCCTAAGCCAACCCACGAAACGA-GCGTACAGGCGC
* * * *
15636808 TCCA-CCGATC-GAAAAGGTAGAATACGCAAGTTGGGGATCGATCCAG-TCCC-CCCTACGTACT
64 T-CAGCCGATCAG-AAAGGCAGAATACACAAGTCGGGGATC-AGCCAGATCCCACCCTACGTACT
** ** * *
15636869 -ACCGATCCTGCTGTCGTAACTTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-TCATATG
126 GA-CGATCCTGCTACCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCT-ATATG
** * *
15636932 CCTAAGTCAACCCACA-AAACGAGCATGCAGGTGCTTAGCCGGTCGGAGAGGCATAATGCGCAAG
189 CCTAAGTCAACCCA-AGAAACGAGCATGCAGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAG
* *
15636996 CCGAGGATCAGTCTAATCCCCTTCTACGTGCTGTCAATCCCGCTGCCGATCCTGCTACCACAGCC
253 CCGAGGATCAGTCTAATCCCCCTCTACGTCCTGTCAAT----C--CC-AT--TG---CCACAGCC
* * *
15637061 CTCGATCCGACTA
306 CTCGATCTGGCTG
* ** * * *
15637074 GGGCTTAGAGATGGAATGAACTCCGTA-CGCCTAAGCCAACCCATAAAATGAGCGTGCCA-GCAC
1 GGGCTTAGACATGGAATGAACTCCGTATC-CCTAAGCCAACCCACGAAACGAGCGT-ACAGGCGC
* * * * *
15637137 TCAGCCGATCGGAGAGGCAGAATGCACAAGCCGAGGATC
64 TCAGCCGATCAGAAAGGCAGAATACACAAGTCGGGGATC
15637176 GGCCTGGTGC
Statistics
Matches: 351, Mismatches: 54, Indels: 41
0.79 0.12 0.09
Matches are distributed among these distances:
316 2 0.01
317 148 0.42
318 85 0.24
319 9 0.03
321 1 0.00
323 2 0.01
324 2 0.01
326 2 0.01
328 6 0.02
329 90 0.26
330 4 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (318 bp):
GGGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTC
AGCCGATCAGAAAGGCAGAATACACAAGTCGGGGATCAGCCAGATCCCACCCTACGTACTGACGA
TCCTGCTACCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGT
CAACCCAAGAAACGAGCATGCAGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGAT
CAGTCTAATCCCCCTCTACGTCCTGTCAATCCCATTGCCACAGCCCTCGATCTGGCTG
Found at i:15637287 original size:26 final size:26
Alignment explanation
Indices: 15637247--15637299 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15637237 CTAGTCTGAT
15637247 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
15637273 CTTAGACATGG-AATGAACTTCGTATG
1 CTTAGAC-TGGAAATGAACTTCGTATG
15637299 C
1 C
15637300 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:15637632 original size:159 final size:157
Alignment explanation
Indices: 15637272--15637697 Score: 482
Period size: 159 Copynumber: 2.7 Consensus size: 157
15637262 AACTTCGTAT
* * *
15637272 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGACATTGAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
* * * * *
15637337 CTGATCGGAGAGGCAGAATGTGCAAGTC-GAGAATC-AGCCCGGTACCCCCTGCGTGCTATCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGTCAG-GGATCGA-CCCGGTCCCCCCTACGTGCTATCGAT
** * *
15637400 CTTGCTGTCGCAACCTCAATCCGGTCTGA
129 CCCGCTGCCACAACCTCAATCCGGTCTGA
* * *
15637429 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGA
** * * * *
15637493 GCCGATCGGAGAGTAATAATGCACAAGTCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGTT
65 GCCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCC-CTACGTGCTATCGAT
** *
15637558 CCCGCTGCCACAACCCTCGGTCCGG-CTGGG
129 CCCGCTGCCACAA-CCTCAATCCGGTCT-GA
* * * * *
15637588 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
* * *
15637653 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCC
66 CCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCC
15637698 TCTTTTCGTG
Statistics
Matches: 223, Mismatches: 39, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
156 1 0.00
157 93 0.42
158 25 0.11
159 103 0.46
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
CCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCC
CGCTGCCACAACCTCAATCCGGTCTGA
Found at i:15637783 original size:26 final size:26
Alignment explanation
Indices: 15637747--15637799 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15637737 CCAATCCGAT
15637747 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
15637773 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15637799 C
1 C
15637800 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15638533 original size:26 final size:26
Alignment explanation
Indices: 15638497--15638549 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15638487 CTGGTTCAAT
15638497 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15638523 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15638549 C
1 C
15638550 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15638556 original size:27 final size:26
Alignment explanation
Indices: 15638500--15638556 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15638490 GTTCAATCTT
*
15638500 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTA
* *
15638526 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTCCATATG-CTA
15638553 AGAC
1 AGAC
15638557 AACCCATGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTA
Found at i:15639256 original size:26 final size:26
Alignment explanation
Indices: 15639218--15639270 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15639208 GGCTCAAAAT
15639218 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15639244 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15639270 C
1 C
15639271 CTAAGCTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15639755 original size:26 final size:26
Alignment explanation
Indices: 15639719--15639771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15639709 CCGGTCCGAT
15639719 CTTAGACTGGGAATGAACCTCGTATG
1 CTTAGACTGGGAATGAACCTCGTATG
* *
15639745 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCTCGTATG
15639771 C
1 C
15639772 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCTCGTATG
Found at i:15640142 original size:26 final size:26
Alignment explanation
Indices: 15640090--15640142 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15640080 CCGGTCTGAT
*
15640090 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
15640116 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
15640142 C
1 C
15640143 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15640406 original size:159 final size:157
Alignment explanation
Indices: 15640126--15640618 Score: 511
Period size: 159 Copynumber: 3.1 Consensus size: 157
15640116 CTTAGACATG
* ** * * *
15640126 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTATGGGCGCTCAGCCGGTCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGA
* * * * * *
15640191 GGCAGAATGCGCAAGCCGGGGTTCAGCCCGGTCCCCCCTTGCGTGCTGTTGATCCTGTTGCCGTA
66 GGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCC-TGCGTGCTGTCGATCCTGCTGCCGTA
*
15640256 ACCTTCGGTCTGGTCCGATCTTAGATCGA
130 ACCCTCGGTCTGGTCCGATCTTAGA-CGA
* * * * *
15640285 GAATGAACTCCGTATGCCTAAGCCGACCCACAAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGA
* * * **
15640350 GGCATAATGCGCAACCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACA
66 GGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGTA
** **
15640415 ACCCTCGGTCTGGTTGGGGCTTAGAC-A
130 ACCCTCGGTCTGGTCCGATCTTAGACGA
* * * * * *
15640442 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAACCAGCCAGA
1 --GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGA
* * * * * * *
15640507 GAGGTAAAAAGTGCAAGCCGGGGATCGGCCTGTTCCCCCCTGCGTGCTATCGATCTTGCAGCCGT
64 GAGGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGT
** ** *
15640572 AACCCTCAATCCAGTCCGATCTTAGACTGG
129 AACCCTCGGTCTGGTCCGATCTTAGAC-GA
*
15640602 GAATGAACTCCATATGC
1 GAATGAACTCCGTATGC
15640619 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 59, Indels: 11
0.79 0.17 0.03
Matches are distributed among these distances:
157 1 0.00
158 56 0.21
159 212 0.79
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGA
GGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAA
CCCTCGGTCTGGTCCGATCTTAGACGA
Found at i:15640621 original size:26 final size:26
Alignment explanation
Indices: 15640592--15640644 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15640582 CCAGTCCGAT
15640592 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15640618 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15640644 C
1 C
15640645 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15640828 original size:193 final size:193
Alignment explanation
Indices: 15640595--15640977 Score: 757
Period size: 193 Copynumber: 2.0 Consensus size: 193
15640585 GTCCGATCTT
*
15640595 AGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
1 AGACTGGGAATGAACTCCATATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
15640660 AAATGAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATGCGCAATCCGGGGATCGAACGGGT
66 AAATGAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATGCGCAATCCGGGGATCGAACGGGT
15640725 GGTAGGTAGGTTCAAGCACATCTTCATATTTTTTCTGTGCCAATGCCATTTTTATGGCTTGTA
131 GGTAGGTAGGTTCAAGCACATCTTCATATTTTTTCTGTGCCAATGCCATTTTTATGGCTTGTA
15640788 AGACTGGGAATGAACTCCATATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
1 AGACTGGGAATGAACTCCATATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
15640853 AAATGAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATGCGCAATCCGGGGATCGAACGGGT
66 AAATGAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATGCGCAATCCGGGGATCGAACGGGT
15640918 GGTAGGTAGGTTCAAGCACATCTTCATATTTTTTCTGTGCCAATGCCATTTTTATGGCTT
131 GGTAGGTAGGTTCAAGCACATCTTCATATTTTTTCTGTGCCAATGCCATTTTTATGGCTT
15640978 ATAAATTCAT
Statistics
Matches: 189, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
193 189 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (193 bp):
AGACTGGGAATGAACTCCATATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
AAATGAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATGCGCAATCCGGGGATCGAACGGGT
GGTAGGTAGGTTCAAGCACATCTTCATATTTTTTCTGTGCCAATGCCATTTTTATGGCTTGTA
Found at i:15641544 original size:26 final size:26
Alignment explanation
Indices: 15641506--15641558 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15641496 GGCTCAAAAT
15641506 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15641532 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15641558 C
1 C
15641559 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15641875 original size:159 final size:158
Alignment explanation
Indices: 15641531--15641997 Score: 467
Period size: 159 Copynumber: 2.9 Consensus size: 158
15641521 AACTCCGTAT
* * * *
15641531 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15641596 CCGACC-AGAGAGGCAAAATGCGCAAGTC-GGGTATCAGTCC-AGTCCCTCTTGCGTGCTGTCGA
66 CCGACCGA-AGAGGCAAAATGCGCAAGACAAGG-ATCGGCCCGA-TCCCCCTTGCGTGCTGTCGA
* * *
15641658 TCCTACTATCGCAACCCTTGGTCCAATCGAA
128 TCCTACTGTCACAACCCTCGGTCCAATCGAA
* * * * **
15641689 TCTTAGAC-TAGGAATGAACTCTATATGCATAAGTCAACCCATGAAACGAATGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
15641753 GTCGACCGAAGAGGCATAATGCACAAGACATGGATCGGCCCGATCCCCCTTTACGTGCTGTCGGT
65 GCCGACCGAAGAGGCAAAATGCGCAAGACAAGGATCGGCCCGATCCCCC-TTGCGTGCTGTCGAT
* * * **
15641818 CCCACTGCCACAACCCTCGGTCC-AGCTGGG
129 CCTACTGTCACAACCCTCGGTCCAATC-GAA
* * * * * *
15641848 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCTTAAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * *
15641913 CCGGTCGAAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAAAATGCGCAAGACAAGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCC
*
15641978 TATTGTCACAACCCTCGGTC
131 TACTGTCACAACCCTCGGTC
15641998 TGGACCGATC
Statistics
Matches: 247, Mismatches: 55, Indels: 14
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 119 0.48
159 126 0.51
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAAAATGCGCAAGACAAGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCC
TACTGTCACAACCCTCGGTCCAATCGAA
Found at i:15642424 original size:26 final size:26
Alignment explanation
Indices: 15642386--15642438 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15642376 CCTGTCTGAT
15642386 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15642412 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15642438 C
1 C
15642439 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15644187 original size:352 final size:351
Alignment explanation
Indices: 15643536--15644544 Score: 1036
Period size: 352 Copynumber: 2.8 Consensus size: 351
15643526 CATGCTGTAG
* * *
15643536 GTCCCGCTACCACAACCCTC-AGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAA
1 GTCCTGCTACCACAACCCTCGA-TCC-GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * * * * * *
15643600 GCCAACACATGAAACGGGCGTGCGGGTGCTCAGCCGACCAGAGAGGCAAAATGCGTAAG-TCGGG
64 GCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTGACGAGAGAGGCAGAATGCGCAAGCT-GGG
* * * * * *
15643664 GA-CTGG-CTCAGTCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCAGTCTGGTCCGATC
128 GATC-GGCCTGA-TCCCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTCAGTCTGGACAGATC
* * *
15643727 TTAGATTGGGAATGAACTCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCAT
191 TTAGACTAGGAATGAACTCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCAC
* * *
15643792 GAAACGAGTCTGCGGGCGCTCAGCCAATCGGAGACGCATAATGCCCAAGCTGGGGATCAGCCCG-
256 GAAACGAGTCTGCGGGCGCTCAGCCAACCGGAGACGCATAATGCCCAAGCCGGAGATCAGCCCGA
15643856 TCCCTCTCTGCATGCTG-TCGATCCCGCTGTC
321 TCCCTCTCTGCATGCTGCT-GATCCCGCTGTC
*
15643887 AGTCCTGCTACCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 -GTCCTGCTACCACAACCCTCGATCC-GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * **
15643952 GCCAACCCATGAAATGAGTGTGCGGGCGCTCAGCTGATGAGAGAGATAGAATGCGCAAGCTGGGG
64 GCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTGACGAGAGAGGCAGAATGCGCAAGCTGGGG
* * * *
15644017 ATCGGCCTGATCCCCCTACGTGCTGTCGATCCTACTATCGTAGCCCTCGATTC-GGACAGATCTT
129 ATCGGCCTGATCCCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTC-AGTCTGGACAGATCTT
* * *
15644081 AGACTAGGAATGAACTCTGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACG
193 AGACTAGGAATGAACTC-GTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACG
* * ** * * **
15644146 AAACGAG-CGTGCGGGTG-TCAGTCGGCCGGAGAGGTATAATGCGTAAGCCGGAGATCAGCCCGA
257 AAACGAGTC-TGCGGGCGCTCAGCCAACCGGAGACGCATAATGCCCAAGCCGGAGATCAGCCCGA
*
15644209 TCCCTCTCTGCATGTTGCTGATCCCGCTGTC
321 TCCCTCTCTGCATGCTGCTGATCCCGCTGTC
* * *
15644240 GTCCTGCTCCCACAACCCTCGATCCGAATGGGGCTTGGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCTGCTACCACAACCCTCGATCCG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * * *
15644305 CCAACCTC-TAAAATGACCGTGTGGGCACTTAGCTGACCG-GAGAGGCAGAATGAGCAAGCCGGG
65 CCAACC-CATGAAATGAGCGTGCGGGCGCTCAGCTGA-CGAGAGAGGCAGAATGCGCAAGCTGGG
* * *
15644368 GATCGGCCCGATCCCTCCATGCGTGCTGTCAATCCTGCTACTAGTCCTGCTGCCACAACCCTCGG
128 GATCGGCCTGATCCC-CC-TGCGTGCTGTCGAT-C--CTACTA----T-C-G---CAACCCTCAG
* * * * * *
15644433 TCTGGTCTGATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGC
179 TCTGGACAGATCTTAGACTAGGAATGAACT-CGTATGCTTAGAC-TGGGGATGAACTCCGTACGC
* ** * *
15644497 CCAACCCAACCCACGAAATGAG-CGTGCGGGCGCTCAGCCGACCGGAGA
242 CTAAGTCAACCCACGAAACGAGTC-TGCGGGCGCTCAGCCAACCGGAGA
15644545 GGTAGAATAC
Statistics
Matches: 546, Mismatches: 81, Indels: 45
0.81 0.12 0.07
Matches are distributed among these distances:
351 1 0.00
352 324 0.59
353 98 0.18
354 13 0.02
355 1 0.00
357 6 0.01
361 1 0.00
362 1 0.00
363 1 0.00
365 2 0.00
366 83 0.15
367 15 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (351 bp):
GTCCTGCTACCACAACCCTCGATCCGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAATGAGCGTGCGGGCGCTCAGCTGACGAGAGAGGCAGAATGCGCAAGCTGGGGAT
CGGCCTGATCCCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTCAGTCTGGACAGATCTTAGA
CTAGGAATGAACTCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAAC
GAGTCTGCGGGCGCTCAGCCAACCGGAGACGCATAATGCCCAAGCCGGAGATCAGCCCGATCCCT
CTCTGCATGCTGCTGATCCCGCTGTC
Found at i:15644486 original size:26 final size:26
Alignment explanation
Indices: 15644444--15644496 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15644434 CTGGTCTGAT
*
15644444 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15644470 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15644496 C
1 C
15644497 CCAACCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15644974 original size:26 final size:26
Alignment explanation
Indices: 15644945--15644997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15644935 CCGGTCTGAT
**
15644945 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
15644971 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
15644997 C
1 C
15644998 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:15645841 original size:26 final size:26
Alignment explanation
Indices: 15645790--15645842 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15645780 CCGGTCTAAT
***
15645790 CTTAGACTGGGAATGAACTTTTTATG
1 CTTAGACTGGGAATGAACTCCATATG
15645816 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15645842 C
1 C
15645843 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15648741 original size:26 final size:26
Alignment explanation
Indices: 15648705--15648757 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15648695 CCTATTCCAT
15648705 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15648731 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15648757 C
1 C
15648758 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15650028 original size:26 final size:26
Alignment explanation
Indices: 15649991--15650047 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15649981 TCGATCCGAT
* * *
15649991 CTTAGACTTGGAATGAGCTTCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
15650017 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
15650043 CTTAG
1 CTTAG
15650048 GCCAACCCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15650286 original size:158 final size:158
Alignment explanation
Indices: 15650123--15650518 Score: 386
Period size: 159 Copynumber: 2.5 Consensus size: 158
15650113 ACCGGATCAG
* * *
15650123 TCCCCCCTGCGTGCTATCGATCTTGCTACTGCAACCCTCAATTCGGTCCGATCTTAGACAGGGAA
1 TCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATTCGGTCCGATCTTAGACAGGGAA
* ** ** * * * * *
15650188 TGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTTTGGGTGCTGAGCTGGTCGAAGACGC
66 TGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGTGATCAACAGATCGAAGACGC
* * * * *
15650253 ATAAT-TCGAAAGTCGAGGATCGGCCCGA
131 AGAATGTAG-AAGCCGAGAATCGACCCGA
* * ** * * * *
15650281 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGA-TCCGACTG-TGGCTTAGACATG
1 TCCCCC-CTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATTCGGTCCGAT--CTTAGACAGG
** ** *
15650344 GAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGATCAACAGATTGAAGA
63 GAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGTGATCAACAGATCGAAGA
* * *
15650409 GGCAGAATGTAGAAGCCGAGAATCGACTCGG
128 CGCAGAATGTAGAAGCCGAGAATCGACCCGA
* * *
15650440 TCCCCCCTGCGTGCTGTCGATCCTACTA-TCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGA
1 TCCCCCCTGCGTGCTGTCGATCCTGCTACT-GCAACCCTCGATTCGGTCCGATCTTAGACAGGGA
15650504 ATGAACTCTGTATGC
65 ATGAACTCTGTATGC
15650519 TTGACTGGGG
Statistics
Matches: 184, Mismatches: 47, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.01
158 63 0.34
159 117 0.64
160 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (158 bp):
TCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATTCGGTCCGATCTTAGACAGGGAA
TGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGTGATCAACAGATCGAAGACGC
AGAATGTAGAAGCCGAGAATCGACCCGA
Found at i:15650532 original size:25 final size:25
Alignment explanation
Indices: 15650496--15650543 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
15650486 TCCGATCTTA
15650496 GACTGGGAATGAAC-TCTGTATGCTT
1 GACTGGGAATGAACTTC-GTATGCTT
*
15650521 GACTGGGGATGAACTTCGTATGC
1 GACTGGGAATGAACTTCGTATGC
15650544 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (25 bp):
GACTGGGAATGAACTTCGTATGCTT
Found at i:15651827 original size:26 final size:26
Alignment explanation
Indices: 15651791--15651843 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15651781 CCTGTTTGAT
*
15651791 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
15651817 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15651843 C
1 C
15651844 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15652112 original size:184 final size:184
Alignment explanation
Indices: 15651606--15652185 Score: 610
Period size: 184 Copynumber: 3.2 Consensus size: 184
15651596 TGGCTCAAAC
* *
15651606 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGCATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
15651671 CACGAAACGAGCATGCGGGCGCTCAGTCGGTC-AGAGAGGCAGAATGCACAAGCCGGGGATCGGC
66 CACGAAACGAGCATGCGGGCGCTCAGTCGATCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGAC
* * * * * ***
15651735 CCAATCCCCCCTGCATGCTGCCGATCCTTCTGTCGCAACCCTCAATCCTGTTTGA
130 CCAGTCCCCCCTACATGCTGCCAATCCTGCTGTCGCAACCCTCAATCCGGACCGA
* * * * *
15651790 TCTTACACTGGGAATGAACTTCGTATGCTTAGACT-GGGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
15651854 CCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGACGTAGTATGCGTAAGCCGGGGATC-AG
65 CCACGAAACGAGCATGCGGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-
* * ** *
15651918 CCCAGTCCCCCCTACGTGCTGCCAATCCTGCTG-CTGCAAGCCTCGGTTCGGACCGA
129 CCCAGTCCCCCCTACATGCTGCCAATCCTGCTGTC-GCAACCCTCAATCCGGACCGA
15651974 TCTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * ** *
15652039 CACGAAACGAGCATACGGGTGCTCAGTCGATCGAAGAGGCAGAATGTGCAAGTTGGGGACCGACC
66 CACGAAACGAGCATGCGGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC
** * ** * * ** * * ** *
15652104 TGGTCCCCCCTGCATGCTATCGATCTTGCTACCGTAACCCTCAGTTTGGTCCGA
131 CAGTCCCCCCTACATGCTGCCAATCCTGCTGTCGCAACCCTCAATCCGGACCGA
* * *
15652158 TCTTAAACTGGGAAGGAACTCTGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
15652186 CTAAGTCAAT
Statistics
Matches: 323, Mismatches: 66, Indels: 14
0.80 0.16 0.03
Matches are distributed among these distances:
183 2 0.01
184 319 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCATGCGGGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC
CAGTCCCCCCTACATGCTGCCAATCCTGCTGTCGCAACCCTCAATCCGGACCGA
Found at i:15652416 original size:159 final size:158
Alignment explanation
Indices: 15652000--15652501 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 158
15651990 AACTCCGTAT
* *
15652000 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAA
* * * ** * * *
15652065 TCGATCGAAGAGGCAGAATGTGCAAGTTGGGGACCGACCTGGTCCCCCCTGCATGCTATCGATCT
66 CCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCT
** *
15652130 TGCTACCGTAACCCTCAGTTTGGTCCGA
131 TGCTACCACAACCCTCAGTTTCGTCCGA
* * * * * * * * * ** *
15652158 TCTTAAAC-TGGGAAGGAACTCTGTATGCCTAAGTCAATCCATGAAATGAGCGTTTGGGCGCT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCA
* * * *
15652221 AGCCGACCGAAGAGGCATAATGCACAAG-CCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCG
65 A-CCGACCGAAGAGGCAGAATGCGCAAGTCAG-GGATCGACCCGGTCCCCC-CTGCATGCTACCG
* * * * ** *
15652285 GTTTTGCTGCCACAACCGTCAGTTTCGTTGGG
127 ATCTTGCTACCACAACCCTCAGTTTCGTCCGA
* *
15652317 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAA
* ** * * ** *
15652382 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGTCTGGT-CCCCCTGTATGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCT
* * * *
15652446 TGCTGCCATAACCCTC-GATCCAGTCCGA
131 TGCTACCACAACCCTCAGTTTC-GTCCGA
* *
15652474 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15652502 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 71, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
156 4 0.02
157 55 0.21
158 88 0.33
159 112 0.42
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAA
CCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCT
TGCTACCACAACCCTCAGTTTCGTCCGA
Found at i:15652511 original size:26 final size:26
Alignment explanation
Indices: 15652475--15652527 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15652465 CCAGTCCGAT
15652475 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
15652501 CTTAGACTGGGTATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15652527 C
1 C
15652528 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15652926 original size:16 final size:16
Alignment explanation
Indices: 15652905--15652947 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
15652895 CCTAAGTCAA
15652905 CCCCAATCGCCGGAAC
1 CCCCAATCGCCGGAAC
*
15652921 CCCCAATCACCGGAAC
1 CCCCAATCGCCGGAAC
15652937 CCCCAAT-GCCG
1 CCCCAATCGCCG
15652948 TTGGATAGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 3 0.12
16 22 0.88
ACGTcount: A:0.26, C:0.51, G:0.16, T:0.07
Consensus pattern (16 bp):
CCCCAATCGCCGGAAC
Found at i:15653630 original size:26 final size:26
Alignment explanation
Indices: 15653601--15653653 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15653591 CTGATCCGAT
15653601 CTTAGAC-TGGGAATGAACTCCGCATG
1 CTTAGACAT-GGAATGAACTCCGCATG
*
15653627 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGCATG
15653653 C
1 C
15653654 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGCATG
Found at i:15654021 original size:159 final size:158
Alignment explanation
Indices: 15653772--15654079 Score: 377
Period size: 159 Copynumber: 1.9 Consensus size: 158
15653762 CTGGTCCCAT
* * * * *
15653772 CTTAGACTGGGAATGAACTCCATATACTTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATACTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAAC
* * * * *
15653837 CGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCTCTCTACATGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACCCGATCCCGCT-TACATGCTATCGATCC
15653902 TACTGCCACAACCCTCAGTCCAGCTTGGG
130 TACTGCCACAACCCTCAGTCCAGCTTGGG
* * *
15653931 CTTAGACAT-GGAATGAACTCCCTAT-GTATAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCATATACT-TAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * ** * * *
15653994 ACCGATCGGAGAGGCAGAATGCCCAAGCCGGGGATCGGGCCGGTCCCGCTTGCGTGCTATCGATC
64 ACCGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACCCGATCCCGCTTACATGCTATCGATC
* *
15654059 CTACTGCTACAACCTTCAGTC
129 CTACTGCCACAACCCTCAGTC
15654080 TGGTCCGACC
Statistics
Matches: 125, Mismatches: 22, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
158 32 0.26
159 92 0.74
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATACTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAAC
CGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACCCGATCCCGCTTACATGCTATCGATCCT
ACTGCCACAACCCTCAGTCCAGCTTGGG
Found at i:15655210 original size:26 final size:26
Alignment explanation
Indices: 15655169--15655221 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15655159 CCGATTTGAT
15655169 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
15655195 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
15655221 C
1 C
15655222 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15655418 original size:26 final size:26
Alignment explanation
Indices: 15655379--15655431 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15655369 CTAATCCGAT
*
15655379 CTTAGACTATGAATGAACTCTGTATG
1 CTTAGACTATGAATGAACTCCGTATG
15655405 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTAT-GAATGAACTCCGTATG
15655431 C
1 C
15655432 CGAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTATGAATGAACTCCGTATG
Found at i:15655908 original size:26 final size:26
Alignment explanation
Indices: 15655879--15655931 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15655869 TCGATCTGCT
*
15655879 CTTATACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
* *
15655905 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
15655931 C
1 C
15655932 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15662013 original size:26 final size:26
Alignment explanation
Indices: 15661984--15662036 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15661974 CCGGTTTGAT
15661984 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
15662010 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15662036 C
1 C
15662037 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15662114 original size:196 final size:197
Alignment explanation
Indices: 15661768--15662132 Score: 486
Period size: 196 Copynumber: 1.9 Consensus size: 197
15661758 CTACTGTCGC
* *
15661768 AACCCTCGGTCCGATTTGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTAGGGATAAACT
1 AACCCTCGGTCCGATTTGATCTTAGACCGAGAATGAACTCCGTATGCTTAGACTAGGAATAAACT
* *
15661833 CCGTATGCCTAAGTCCACCCACAAAACGAGCATGCAGGCACTCAACCGGCTGGAGAGGCAGAATG
66 CCGTATGCCTAAGTCCACCCACAAAACGAACATGCAGGCACTCAACCGGCTGGACAGGCAGAATG
** * *
15661898 CGTAAGCCGGGGAACGGCCCGGTC-CCCCCTGCGTGCTGCCAATCCTGTTGCTGGTCTTGCTACC
131 CACAAGCCAGGGAACGGCCCGGTCTCCCCCTACGTGCTGCCAATCCTGTTGCTGGTCTTGCTACC
15661962 GT
196 GT
* * *
15661964 AACCCTCGGTCCGGTTTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-ATGGAATGAAC
1 AACCCTCGGTCCGATTTGATCTTAGACCGAGAATGAACTCCGTATGCTTAGACTA-GGAATAAAC
* * * ** * * *
15662028 TCCGTATGCCTAAG-CCAACCCATAAAATGAACGTGTGGGCGCTCAGCCAG-TCGGACAGGCAGA
65 TCCGTATGCCTAAGTCC-ACCCACAAAACGAACATGCAGGCACTCAACCGGCT-GGACAGGCAGA
* *
15662091 ATGCACAAGCTAGGGACCGGCCCGGTCTCCCCCTACGTGCTG
128 ATGCACAAGCCAGGGAACGGCCCGGTCTCCCCCTACGTGCTG
15662133 TCGATCCAGC
Statistics
Matches: 144, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
195 4 0.03
196 127 0.88
197 13 0.09
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (197 bp):
AACCCTCGGTCCGATTTGATCTTAGACCGAGAATGAACTCCGTATGCTTAGACTAGGAATAAACT
CCGTATGCCTAAGTCCACCCACAAAACGAACATGCAGGCACTCAACCGGCTGGACAGGCAGAATG
CACAAGCCAGGGAACGGCCCGGTCTCCCCCTACGTGCTGCCAATCCTGTTGCTGGTCTTGCTACC
GT
Found at i:15662435 original size:159 final size:157
Alignment explanation
Indices: 15662009--15662437 Score: 416
Period size: 159 Copynumber: 2.7 Consensus size: 157
15661999 AACTCCGTAT
** * *
15662009 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAACGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
15662074 CCAGTCGGACAGGCAGAATGCACAAGCTAGGGACCGGCCCGGTCTCCCCCTACGTGCTGTCGATC
66 CCAGCCGGACAGGCAGAATGCACAAGC-AGGGATCGGCCCGGTC-CCCCCTACGTGCTCTCGATC
*
15662139 CAGCTACCGCAACCCTCAGTCCGGTCCGA
129 CAGCTACCACAACCCTCAGTCCGGTCCGA
* * * * *
15662168 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * ** *
15662232 GCTAGCCGGAGAGGCATAATACTCAAGCCGGGGATCGGCTCGGTCCCCTTTTATGTGCTACT-GA
65 GCCAGCCGGACAGGCAGAATGCACAAG-CAGGGATCGGCCCGGTCCCC-CCTACGTGCT-CTCGA
* * ** *
15662296 TCCTGCTGCCACAACCCTCAGTTTGGT-TGA
127 TCCAGCTACCACAACCCTCAGTCCGGTCCGA
* * * *
15662326 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * **
15662391 GTC-GACCGGATAGGCAGAATGCACAAGTCAAGGATTAGCCCGGTCCC
65 GCCAG-CCGGACAGGCAGAATGCACAAG-CAGGGATCGGCCCGGTCCC
15662438 TCATGCGTGC
Statistics
Matches: 215, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
158 7 0.03
159 205 0.95
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCAGCCGGACAGGCAGAATGCACAAGCAGGGATCGGCCCGGTCCCCCCTACGTGCTCTCGATCCA
GCTACCACAACCCTCAGTCCGGTCCGA
Found at i:15662891 original size:26 final size:26
Alignment explanation
Indices: 15662853--15662905 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15662843 CCGGTCCGAT
*
15662853 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15662879 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15662905 C
1 C
15662906 CCCATGAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15664209 original size:11 final size:11
Alignment explanation
Indices: 15664189--15664221 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15664179 CGATTAGGCT
15664189 CTCCGACGATG
1 CTCCGACGATG
*
15664200 CTCTGACGATG
1 CTCCGACGATG
15664211 CTCCGACGATG
1 CTCCGACGATG
15664222 GTACCCCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:15664329 original size:26 final size:26
Alignment explanation
Indices: 15664291--15664343 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15664281 GGCTTAAACT
15664291 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15664317 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15664343 C
1 C
15664344 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15664758 original size:371 final size:375
Alignment explanation
Indices: 15664065--15664772 Score: 1032
Period size: 371 Copynumber: 1.9 Consensus size: 375
15664055 TGAGTTCTGA
*
15664065 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* * * **
15664130 CGCACACCCCTCGGCCGGCCCCCCCAATCGCCGGAACTGCAAATGCCGTCGATTAGGCTCTCCGA
66 CGCACACCCCTC-GCCGGACACCCCAATCGCCGAAACCCCAAATGCCGTCGATTAGGCTCTCCGA
* * * *
15664195 CGATGCTCTGACGATGCTCCGACGATGGTACCCCAGGTGAAAAAAATGCGGCACCAGCACATGCC
130 CGATGCTCCGACGATGCTCCGACGATGGTACCCCAGGAGAAAAAAATACAGCACCAGCACATGCC
* * * * *
15664260 CGAGCCCAGCATGTGCACCATGGCTTAAACTCTTAGACTGGGAATGAACTCCGTATGCTTAGACA
195 CAAGCCCAGCATGTGCACCATGGCTCAAACTCTTAAACTGAGAATGAACTCCGTAAGCTTAGACA
* * * * * *
15664325 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGACCGGA
260 TAGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAACCGACCGAA
15664390 GAGGCAGAATGCGTAAGTCGGAGACCGGCCCGATCCCCCCCTACATTCTCG
325 GAGGCAGAATGCGTAAGTCGGAGACCGGCCCGATCCCCCCCTACATTCTCG
* *
15664441 AGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* *
15664506 CGCACA-CCC-C-CC-GACACCCCAATCGTCGAAACCCCCAATGCCGTCGATTAGGCTCTCC-AG
66 CGCACACCCCTCGCCGGACACCCCAATCGCCGAAACCCCAAATGCCGTCGATTAGGCTCTCCGA-
* * * * *
15664566 TGATGCTCCGGCGATGCTCCGATGATGGTGCCCC-GAGAGAAAAAAATACAGCACCAGTACATGC
130 CGATGCTCCGACGATGCTCCGACGATGGTACCCCAG-GAGAAAAAAATACAGCACCAGCACATGC
* *
15664630 CCAAGCCTAGCATGTGCACCGTGGCTCAAACTCTTAAACTGAGAATGAACTCCGTAAGCTTAGAC
194 CCAAGCCCAGCATGTGCACCATGGCTCAAACTCTTAAACTGAGAATGAACTCCGTAAGCTTAGAC
* * *
15664695 ATAGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAACCGACCGA
259 ATAGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAACCGACCGA
15664760 AGAGGCAGAATGC
324 AGAGGCAGAATGC
15664773 ACAAGCCGGG
Statistics
Matches: 295, Mismatches: 35, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
370 2 0.01
371 219 0.74
372 2 0.01
374 1 0.00
375 3 0.01
376 68 0.23
ACGTcount: A:0.28, C:0.30, G:0.25, T:0.17
Consensus pattern (375 bp):
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
CGCACACCCCTCGCCGGACACCCCAATCGCCGAAACCCCAAATGCCGTCGATTAGGCTCTCCGAC
GATGCTCCGACGATGCTCCGACGATGGTACCCCAGGAGAAAAAAATACAGCACCAGCACATGCCC
AAGCCCAGCATGTGCACCATGGCTCAAACTCTTAAACTGAGAATGAACTCCGTAAGCTTAGACAT
AGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAACCGACCGAAG
AGGCAGAATGCGTAAGTCGGAGACCGGCCCGATCCCCCCCTACATTCTCG
Found at i:15665940 original size:26 final size:26
Alignment explanation
Indices: 15665911--15665963 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15665901 CTGGTCCGAT
15665911 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
* *
15665937 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
15665963 C
1 C
15665964 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15666617 original size:26 final size:26
Alignment explanation
Indices: 15666581--15666633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15666571 CTGGTTCGAT
*
15666581 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15666607 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15666633 C
1 C
15666634 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15667319 original size:26 final size:26
Alignment explanation
Indices: 15667280--15667332 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15667270 GGCTCAAACT
*
15667280 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
15667306 CTTAGACATG-GAATGAACTCCATATG
1 CTTAGAC-TGAGAATGAACTCCATATG
15667332 C
1 C
15667333 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15668370 original size:26 final size:26
Alignment explanation
Indices: 15668334--15668386 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15668324 CCGATCCGAT
15668334 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15668360 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15668386 C
1 C
15668387 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15670283 original size:593 final size:597
Alignment explanation
Indices: 15669406--15670492 Score: 1425
Period size: 593 Copynumber: 1.8 Consensus size: 597
15669396 TGGAATGAAC
*
15669406 TTCGTATGCCTATGCCAATCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAAT
1 TTCGTATGCCTATGCCAATCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAAT
* * * *
15669471 GCGCAAGCCGGGGATTAGCCTGGTCCCCCCTGCATGCTATCGATCCTGCTGCTGGTCTTGCTGCC
66 GCGCAAGCCGGGGATAAGCCTGGTCCCCCC-GCATG---TCG---CTGCTGCCGATCCTGCTGCC
* *
15669536 GTAACCCTCGGTTCAATCACATCTTAGATTGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
124 GTAACCCTCGGTTCAATCACAACTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * *
15669601 TCCGTATGCCTAAGTCAACCCAAGAAACGAGCTTGCAGGCACTGCTTGCCCTAGAGGCATAATGT
189 TCCGTATGCCTAAGTCAACCCAAGAAACGAGCTTGCAGGCACTGCCTGCCATAGAGGCATAATGC
* * * *
15669666 GCAAGCCTGGGATCGGCCCGGTCCCGCTTTGCATGCTGTCAGTCCCGCTGCCACAACCCTCAG-T
254 GCAAGCCTGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCAGTCCCACTGCCACAACCCT-AGAT
* * * *
15669730 CCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGAGTGCG
318 CCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCA
* * ** * *
15669795 GGCGCTCAACCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCCGATCCCCCATGCGTGC
383 AGCGCTCAACCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCC-TGCGTGC
*
15669860 TGCCGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCTTCATATTTTTGCCTTGCCAATGCCA
447 TGCCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTCATATTTTTGCCTTGCCAATGCCA
15669925 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGAC
512 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGAC
15669990 GACCCGTTTTCGTGGCAAGCT
577 GACCCGTTTTCGTGGCAAGCT
* * * * *
15670011 TTCGTATGCCTATGCCGATCCATGAAATGAGTGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAAT
1 TTCGTATGCCTATGCCAATCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAAT
* * * * *
15670076 GTGCAGGTCGGGGATAAGCCTGGTCCCCCC-C-TG-CG-TGCTGCCGATCCTGCTGCCG-CATCC
66 GCGCAAGCCGGGGATAAGCCTGGTCCCCCCGCATGTCGCTGCTGCCGATCCTGCTGCCGTAACCC
** * * *
15670136 TCGGTGT-GGTCCCAACTTAGACTGCGAATGAACTTCGTATGCTTATA-TGGGGATGAACTCCGT
131 TCGGT-TCAATCACAACTTAGACTG-GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
* *
15670199 ATGCCTAAGTCAACCCAAGAAACGAGCTTGCGGGCGCTGCCTGCCATAGAGGCATAATGCGCAAG
194 ATGCCTAAGTCAACCCAAGAAACGAGCTTGCAGGCACTGCCTGCCATAGAGGCATAATGCGCAAG
* ** * * *
15670264 CCTGGGATCAGCTCGGTCCCCCTCTGTGTGCTGTCGGTCCCACTGCCACAACCCTTGATCCGGCT
259 CCTGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCAGTCCCACTGCCACAACCCTAGATCCGACT
* * * * * * *
15670329 GGGGCTTAGACATGGAATAAACTCCGTATGCCTCAGCTAACCCATGAAATGAGTGTGCAAGCGTT
324 GGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAAGCGCT
* * * ** * *
15670394 CAGCCGGCCGAAGAGGTAGAATGCACAAGCCAGGTATTGGCTCGATCCCCCTGCGTGCTGTCGAT
389 CAACCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTGCGTGCTGCCGAT
* * * *
15670459 CCTACTGCTGCGACCCTTGGTCCGATCTGATCTT
454 CCTACTGCCGCAACCCTCGGTCCGATCCGATCTT
15670493 AGACTGGGAA
Statistics
Matches: 413, Mismatches: 66, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
592 43 0.10
593 242 0.59
594 38 0.09
598 2 0.00
602 2 0.00
603 1 0.00
605 85 0.21
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (597 bp):
TTCGTATGCCTATGCCAATCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAAT
GCGCAAGCCGGGGATAAGCCTGGTCCCCCCGCATGTCGCTGCTGCCGATCCTGCTGCCGTAACCC
TCGGTTCAATCACAACTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAT
GCCTAAGTCAACCCAAGAAACGAGCTTGCAGGCACTGCCTGCCATAGAGGCATAATGCGCAAGCC
TGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCAGTCCCACTGCCACAACCCTAGATCCGACTGG
GGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAAGCGCTCA
ACCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTGCGTGCTGCCGATCC
TACTGCCGCAACCCTCGGTCCGATCCGATCTTCATATTTTTGCCTTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTT
TCGTGGCAAGCT
Found at i:15670738 original size:159 final size:157
Alignment explanation
Indices: 15670188--15670770 Score: 473
Period size: 157 Copynumber: 3.7 Consensus size: 157
15670178 TTATATGGGG
* * * * *
15670188 ATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCTTGCGGGCGCT--GCCTGCCATAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGG
* * * * *
15670251 CATAATGCGCAAGCCTGGGATCAGCTCGGTCCCCCTCTGTGTGCTGTCGGTCCCACTGCCACAAC
66 CAGAATGCGCAAGCCGGGGATCAGCCCGAT-CCCCTCTGCGTGCTGTC-GTCCCACTGCCACAAC
* *
15670316 CCTTGATCCGGCTGGGGCTTAGACATGGA
129 CCTTGGTCCAGCTGGGGCTTAGACATGGA
* * * * ** **
15670345 ATAAACTCCGTATGCCTCAG-CTAACCCATGAAATGAGTGTGCAAGCGTTCAGCCGGCC-GAAGA
1 ATGAACTCCGTATGCCTAAGTC-AACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAG-AGA
* * * * ** * * ** *
15670408 GGTAGAATGCACAAGCCAGGTATTGGCTCGATCCCC-CTGCGTGCTGTCGATCCTACTGCTGCGA
64 GGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTGTCG-TCCCACTGCCACAA
* **
15670472 CCCTTGGTCCGATCT-GATCTTAGAC-TGGGA
128 CCCTTGGTCC-AGCTGGGGCTTAGACAT-GGA
* * * * * * * * *
15670502 ATGAACTCTGTATGCCTAGGTCAACCCACGAAATGAGCGTTCGGGCATTGAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGG
* ** * * *
15670567 CATAATATGCAAGCCGGGGATC-GACCCGATCCCTCTTTACGTGCTGTCAGTCCCGCTGCCACAA
66 CAGAATGCGCAAGCCGGGGATCAG-CCCGATCCC-CTCTGCGTGCTGTC-GTCCCACTGCCACAA
* *
15670631 CCCTCGGTCCAGCTGGGGCTTAGACATAGA
128 CCCTTGGTCCAGCTGGGGCTTAGACATGGA
* * *
15670661 ATGAACTCCCTATGCCTAAG-CGAACCCATGAAACGGGCGTGCGGGCACTCAGCCGGCTAGAGAG
1 ATGAACTCCGTATGCCTAAGTC-AACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAG
* * * * *
15670725 GTAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTG
65 GCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTG
15670771 CTGAACCTGC
Statistics
Matches: 325, Mismatches: 84, Indels: 33
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.01
157 150 0.46
158 21 0.06
159 147 0.45
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGG
CAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTGTCGTCCCACTGCCACAACCC
TTGGTCCAGCTGGGGCTTAGACATGGA
Found at i:15671438 original size:26 final size:26
Alignment explanation
Indices: 15671409--15671461 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15671399 CCGGTCCGAT
*
15671409 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCAGTATG
*
15671435 CTTAGACATGGAATGAGCTCAGTATG
1 CTTAGACATGGAATGAACTCAGTATG
15671461 C
1 C
15671462 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCAGTATG
Found at i:15671777 original size:159 final size:154
Alignment explanation
Indices: 15671593--15672124 Score: 468
Period size: 159 Copynumber: 3.4 Consensus size: 154
15671583 CTAATCCAAT
* * * * * * *
15671593 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAAGC
* *
15671658 CAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGATCCCCCTCTGCATGCTGTCAGTCT
66 CAGTCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCTGATCCCCCTCTG-ATGCT-TC-GTCT
15671723 CGCTACCATAACCCTCGGTCTGGATGGGG
128 CGCTACCA-AACCCTCGGTCT-GATGGGG
* * *
15671752 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAAG
* * * * * * *
15671816 CC-GATCGGAAAGGCAGAATGTGCAAGCCGACGACCGGCCTGGTCCCCCTAC-G-TGCTATCGAT
65 CCAG-TCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCTGATCCCCCT-CTGATGCT-TCG-T
* * * * **
15671878 CCTACTGTTA-C-AACCCTCGATCCGATACGAT
126 -CT-C-GCTACCAAACCCTCGGTCTGAT-GGGG
* * * * * *
15671909 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAAGC
* * * *
15671974 CAGTCGTG-GAGGCATAATGCGTAAGTCGTGGATCGGCCCGATCCTCCTCTGAGTGCTTCCGGTC
66 CAGTCG-GAGAGGCATAATGCGCAAGTCGAGGATCGGCCTGATCCCCCTCTGA-TGCTT-C-GTC
*
15672038 CCGCTACCACAACCCTCGGTCTGACTGGGG
127 TCGCTACCA-AACCCTCGGTCTGA-TGGGG
* * *
15672068 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGG
15672125 TGCTCAGTCG
Statistics
Matches: 294, Mismatches: 58, Indels: 42
0.75 0.15 0.11
Matches are distributed among these distances:
156 9 0.03
157 110 0.37
158 7 0.02
159 160 0.54
160 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (154 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAAGC
CAGTCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCTGATCCCCCTCTGATGCTTCGTCTCGC
TACCAAACCCTCGGTCTGATGGGG
Found at i:15672009 original size:316 final size:316
Alignment explanation
Indices: 15671434--15672179 Score: 901
Period size: 316 Copynumber: 2.4 Consensus size: 316
15671424 AACTCCGTAT
* * * * * * * *
15671434 GCTTAGACATGGAATGAGCTCAGTATGCCAAAGCCAACCCACGAAATGAACGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
15671499 CCGGTCGAAAAGGTAGAATGCGCAAGCC-AGGGATCGGCCCGATCCCCTCTGCGTACTGTCGATC
66 CCGGTCGGAAAGGCAGAATGAGCAAGCCGA-GGAACGGCCCGGTCCCC-CTACGTACTATCGATC
* * * * * *
15671563 CAGCTGTCGCAACCCTCGGTCTAATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
129 CAGCTGTCACAACCCTCGATCCAATACAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCA
*** *
15671628 ACCCACGAAATGAGCATACGGGTGTTGAGCCAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCG
194 ACCCACGAAATGAGCATACGGGCACTAAGCCAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCG
* * *
15671693 GCCTGATCCCCCTCTGCA-TGCTGT-CAGTCTCGCTACCATAACCCTCGGTCTGGA-TGGG
259 GCCCGATCCCCCTCTG-AGTGCT-TCCAGTCCCGCTACCACAACCCTCGGTCT-GACTGGG
*
15671751 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
15671816 CCGATCGGAAAGGCAGAATGTGCAAGCCGACGACCGGCCTGGTCCCCCTACGTGCTATCGATCCT
66 CCGGTCGGAAAGGCAGAATGAGCAAGCCGAGGAACGGCCCGGTCCCCCTACGTACTATCGATCC-
* * *
15671881 A-CTGTTACAACCCTCGATCCGATACGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAA
130 AGCTGTCACAACCCTCGATCCAATACAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
15671945 CCCACGAAATGAGCGTTCGGGCACTAAGCCAGTCGTG-GAGGCATAATGCGTAAGTCGTGGATCG
195 CCCACGAAATGAGCATACGGGCACTAAGCCAGCCG-GAGAGGCATAATGCGCAAGTCGGGGATCG
* *
15672009 GCCCGATCCTCCTCTGAGTGCTTCCGGTCCCGCTACCACAACCCTCGGTCTGACTGGG
259 GCCCGATCCCCCTCTGAGTGCTTCCAGTCCCGCTACCACAACCCTCGGTCTGACTGGG
* * * *
15672067 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15672132 TCGGCCTGAGAGGCAGAATGAGCAAGCCGAGGAACGACCCGGTCCCCC
66 CCGGTCGGAAAGGCAGAATGAGCAAGCCGAGGAACGGCCCGGTCCCCC
15672180 CTTGCACGCT
Statistics
Matches: 366, Mismatches: 57, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
315 4 0.01
316 265 0.72
317 96 0.26
318 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAAAGGCAGAATGAGCAAGCCGAGGAACGGCCCGGTCCCCCTACGTACTATCGATCCA
GCTGTCACAACCCTCGATCCAATACAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATGAGCATACGGGCACTAAGCCAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGC
CCGATCCCCCTCTGAGTGCTTCCAGTCCCGCTACCACAACCCTCGGTCTGACTGGG
Found at i:15672766 original size:26 final size:26
Alignment explanation
Indices: 15672737--15672788 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15672727 TCCGGTCCGA
*
15672737 TCTTAGACT-GGGAATGAACTCCGTAT
1 TCTTAGACTACGG-ATGAACTCCGTAT
*
15672763 TCTTAGACTACGGATGAACTCTGTAT
1 TCTTAGACTACGGATGAACTCCGTAT
15672789 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTACGGATGAACTCCGTAT
Found at i:15673120 original size:170 final size:170
Alignment explanation
Indices: 15672763--15673131 Score: 370
Period size: 171 Copynumber: 2.2 Consensus size: 170
15672753 AACTCCGTAT
* * * *
15672763 TCTTAGACTACGG-ATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGATGCTCA
1 TCTTAGACT--GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCA
* * * * **
15672827 GCCGGTCGGAGAGGCGTAATGTGCAAGTTAGGGATCAACCCGGTCCCCCTCTTCGTGCTGTCGAT
64 GCCGGCCGAAAAGGCGTAATGCGCAAGCCAGGGATCAACCCGGTCCCCCTCTTCGTGCTGTCGAT
* *
15672892 CCTGCTACCAGTCCTGCTACAACAACCCTCAGTCTGACTAGG
129 CCTGCTACCAGTCCTGCTACAACAACCCTCAGTCAGACTAGA
* * *
15672934 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * * * *
15672999 TCGGCCGAAAAGGCAG-AATGCGTAAGCCGGGGATCGACCCGGTCCCCC-CTAT-GTGTTGTCGA
65 CCGGCCGAAAAGGC-GTAATGCGCAAGCCAGGGATCAACCCGGTCCCCCTCT-TCGTGCTGTCGA
* ** *** * *
15673061 TCCTGTTACTGGTCCTGCTACCGTAACCCTCAGTCCAGTC-CGA
128 TCCTGCTACCAGTCCTGCTACAACAACCCTCAGT-CAGACTAGA
* *
15673104 TCTTAGACTGGGAATGAATTCCATATGC
1 TCTTAGACT-GGAATGAACTCCGTATGC
15673132 TTAGACATGG
Statistics
Matches: 161, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
169 1 0.01
170 65 0.40
171 93 0.58
172 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (170 bp):
TCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGC
CGGCCGAAAAGGCGTAATGCGCAAGCCAGGGATCAACCCGGTCCCCCTCTTCGTGCTGTCGATCC
TGCTACCAGTCCTGCTACAACAACCCTCAGTCAGACTAGA
Found at i:15673643 original size:26 final size:26
Alignment explanation
Indices: 15673607--15673659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15673597 CCAGTCTGAT
*
15673607 CTTAGACTGGGAATAAACTTTGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
* *
15673633 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
15673659 C
1 C
15673660 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:15680251 original size:26 final size:26
Alignment explanation
Indices: 15680222--15680274 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680212 CCGATTCGAT
** *
15680222 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACAAGGAATGAACTCCGTATG
*
15680248 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAAACAAGGAATGAACTCCGTATG
15680274 C
1 C
15680275 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACAAGGAATGAACTCCGTATG
Found at i:15680761 original size:26 final size:26
Alignment explanation
Indices: 15680720--15680772 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680710 TCTGGTGGAT
*
15680720 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
* * *
15680746 CTTAGATGGGGGATGAATTTCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
15680772 C
1 C
15680773 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:15682187 original size:26 final size:26
Alignment explanation
Indices: 15682151--15682203 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15682141 CTGGTCTGAT
15682151 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15682177 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15682203 C
1 C
15682204 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15682489 original size:379 final size:367
Alignment explanation
Indices: 15681762--15682492 Score: 806
Period size: 379 Copynumber: 2.0 Consensus size: 367
15681752 TCCTATTGCT
*
15681762 GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGAGGATGAA
1 GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAA
* * * * *
15681827 CTTCATATGCCTAAGTCAACCCACGAAACGAGCATGCGAGGGCTCAGCCGGTTGGAGAGGCATAA
66 CTCCATATGCCTAAGTCAACCCACAAAACAAGCATGCGAGCGCTCAGCCGGTTGAAGAGGCATAA
* * * * * * * * *
15681892 TGTGATAGCCGGGGATCAGCCCGACCCCTTTCTGCGTGCTGTCGATCCCGCTGTCGGTCCTGCTG
131 TGTCAAAGCCGAGGATCAACCCGACCCCTCTCTGCATGCTGCCGATCCCGCTCTCGGTCCTGCTA
* * * * * *
15681957 CCACAACCCTTGGTCGGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
196 CCACAACCCTCGGTCCGACTGGGGCTTAAACATAGAATGAACTCCGTATGCCTAAGCCAACCCAC
* **
15682022 GAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATTAGCCCGA
261 GAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGA
****
15682087 TCCTTTTTGCATGCTACCGATCCTGCTAATGGTCCTGCTACC
326 TCCCCCCTGCATGCTACCGATCCTGCTAATGGTCCTGCTACC
* *
15682129 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
1 GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAA
* * *
15682194 CTCCGTATGCCTAAGTCAACCCATAAAACAAGC-TGCCG-GCGTTCAACCGGCCAGAGAGGTCGA
66 CTCCATATGCCTAAGTCAACCCACAAAACAAGCATG-CGAGCGCTC-A---GCC-----GGT---
*
15682257 TCGAAGAGGCATAATG-CACAAGTCGAGGATCAACCCGATCCCC-CTCTGCATGCTGCCGATCCC
118 T-GAAGAGGCATAATGTCA-AAGCCGAGGATCAACCCGA-CCCCTCTCTGCATGCTGCCGATCCC
* ** * *
15682320 GCTACT-GGTCTTGCTACCACAATTCTCGGTCCGACTGGGGCTTAAACTTAGAATGAACTTCGTA
180 GCT-CTCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAAACATAGAATGAACTCCGTA
* *** * * * *
15682384 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTTGACTGGATAGGTAGAATGCGTAA
244 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGTAGAATGCGCAA
* * * **
15682449 GCCGAGGACCAGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCT
309 GCCGAGGACCAGCCCGATCCCCCCTGCATGCTACCGATCCTGCT
15682493 GTCGCAACCC
Statistics
Matches: 295, Mismatches: 52, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
366 6 0.02
367 93 0.32
370 3 0.01
375 3 0.01
378 2 0.01
379 183 0.62
380 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (367 bp):
GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAA
CTCCATATGCCTAAGTCAACCCACAAAACAAGCATGCGAGCGCTCAGCCGGTTGAAGAGGCATAA
TGTCAAAGCCGAGGATCAACCCGACCCCTCTCTGCATGCTGCCGATCCCGCTCTCGGTCCTGCTA
CCACAACCCTCGGTCCGACTGGGGCTTAAACATAGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGA
TCCCCCCTGCATGCTACCGATCCTGCTAATGGTCCTGCTACC
Found at i:15689646 original size:159 final size:158
Alignment explanation
Indices: 15689279--15689693 Score: 393
Period size: 159 Copynumber: 2.6 Consensus size: 158
15689269 ATTTCGTATG
** * * * *
15689279 CCTAAGCCAACCCACAAAACAAGCGTGCGGGTGCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGC
1 CCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAACC
* * ** *
15689344 CGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCTTGCTGCCACAACCCTCAATCCGACCCG
66 CGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCAGCTGCCACAACCCTCAATCCGACCAG
* * * * * **
15689409 ATCTTAGACTGGGAATGAACTTCGTATG
131 AGCATAGACTGGGAATAAACTCCCTAAA
* * * ** ** * * * * *
15689437 CATAAGTCAACACATGAAATGAGCGTGCGACCGTTAAGCCAACCGAAGAGGCATAATGCGTAACC
1 CCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAACC
* ** *
15689502 CGAGGATCGGCTCGATCCCCCTCTACGTGCTGTCGATCCAGCTGCCACAACCCTCGGTCCGACTA
66 CGAGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCCAGCTGCCACAACCCTCAATCCGACCA
*
15689567 GGGCATAGACAT-GGAATAAACTCCCTAAA
130 GAGCATAGAC-TGGGAATAAACTCCCTAAA
* * * **
15689596 CCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAA-GCGCAAGT
1 CCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAACC
* * * * *
15689660 AGGGGATCGGCCCGGTCCTCCCTGCGTGCTGTCG
66 CGAGGATCGGCCCGATCCCCCCTACGTGCTGTCG
15689694 TAACCTTTAG
Statistics
Matches: 197, Mismatches: 58, Indels: 5
0.76 0.22 0.02
Matches are distributed among these distances:
157 12 0.06
158 87 0.44
159 97 0.49
160 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (158 bp):
CCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAACC
CGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCAGCTGCCACAACCCTCAATCCGACCAG
AGCATAGACTGGGAATAAACTCCCTAAA
Found at i:15689743 original size:25 final size:26
Alignment explanation
Indices: 15689715--15689766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15689705 CCGGTCCGAT
15689715 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15689740 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15689766 C
1 C
15689767 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15689852 original size:329 final size:336
Alignment explanation
Indices: 15689411--15690140 Score: 787
Period size: 329 Copynumber: 2.2 Consensus size: 336
15689401 CCGACCCGAT
* * * * ** * *
15689411 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACACATGAAATGAGCGTGCGACCGTTAAGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAAC
* * * * ** *
15689476 CAACCGAAGAGGCATAATGCGTAACCCGAGGATCGGCTCGATCCCCCTCTACGTGCTGTC-GATC
66 CAACCGAAGAGGCATAATGCGCAACCAGAGGATAGGCTCGATCCCCCTCTACATGCTACCAGAAC
*
15689540 CAGCTGCCACAACCCTCGGTCC-GACTAGGGCATAGACATGGAATAAACTCCCTAAACCTAAGCC
131 C-GCAGCCACAACCCTCGGTCCTG-CTAGGGCATAGACATGGAATAAACTCCCTAAACCTAAGCC
* * * * **
15689604 AACCCATGAAACAAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAA-GCGCAAGTAGGGGATC
194 AACCCACGAAACAAGCGTGCAGGCACTCAGCCGATCGGAGAGGCAAAATGCGCAAGCAGGACATC
* * * * *
15689668 GGCCCGGT-CCTC-C-CTG-CG-TGCTGTCGTAACCTTTAGTCCGGTCCGATCTTAGACTG-GAA
259 GGCCCGGTCCCCCGCACTGTCGCTGCTGTCGCAAACATCAGTCCGGTCCGATCTTAGACTGAGAA
*
15689727 TGAACTCCGTATG
324 TGAACTCCATATG
*
15689740 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAAAC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAAC
*** * *
15689805 CCGTCGAAGAGGCATAATGCGCAAGCCAG-GGATAGGCTCGGTCCCCCTCTGCATGCTACCAGAA
66 CAACCGAAGAGGCATAATGCGCAA-CCAGAGGATAGGCTCGATCCCCCTCTACATGCTACCAGAA
* * * * **
15689869 CCGCAGCCACAACCTTCGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCAGCCACAACCCTCGGTCCTGCTAGGGCATAGACATGGAATAAACTCCCTAAACCTAAGCCA
*** ** * * * *
15689934 ACCCACGAAATGGGCGTGCAGGTGCTCAGCCGATCGTAGAGGTAAAATGTGCAAGCCGGACATCG
195 ACCCACGAAACAAGCGTGCAGGCACTCAGCCGATCGGAGAGGCAAAATGCGCAAGCAGGACATCG
* *
15689999 GCCCGGTCACCCCCGCATGCTGTCGATCCTGCTGTCGCAAACATCGGTCCGGTTCGATCTTAGAC
260 GCCCGGT--CCCCCGCA--CTGTCG---CTGCTGTCGCAAACATCAGTCCGGTCCGATCTTAGAC
15690064 TGAGAATGAACTCCATATG
318 TGAGAATGAACTCCATATG
* * * ** *
15690083 CTTAGACTGGGGATGAATTCCATATGCCTAAGTCAACCCACAAAACGAGCATGCGGGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGC
15690141 ACTCAGCCGA
Statistics
Matches: 326, Mismatches: 58, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
329 192 0.59
330 27 0.08
333 3 0.01
334 1 0.00
337 3 0.01
338 2 0.01
342 32 0.10
343 66 0.20
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (336 bp):
CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAAC
CAACCGAAGAGGCATAATGCGCAACCAGAGGATAGGCTCGATCCCCCTCTACATGCTACCAGAAC
CGCAGCCACAACCCTCGGTCCTGCTAGGGCATAGACATGGAATAAACTCCCTAAACCTAAGCCAA
CCCACGAAACAAGCGTGCAGGCACTCAGCCGATCGGAGAGGCAAAATGCGCAAGCAGGACATCGG
CCCGGTCCCCCGCACTGTCGCTGCTGTCGCAAACATCAGTCCGGTCCGATCTTAGACTGAGAATG
AACTCCATATG
Found at i:15690098 original size:26 final size:26
Alignment explanation
Indices: 15690057--15690109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15690047 CCGGTTCGAT
15690057 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
15690083 CTTAGACTGGGGATGAATTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
15690109 C
1 C
15690110 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15691080 original size:21 final size:21
Alignment explanation
Indices: 15691054--15691101 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
15691044 GGGATCGGCT
15691054 CGGTCCCCCTCTGCATGCTGC
1 CGGTCCCCCTCTGCATGCTGC
*
15691075 CGGTCCCCCTCTGCATGTTGC
1 CGGTCCCCCTCTGCATGCTGC
15691096 CGGTCC
1 CGGTCC
15691102 AGCTGCCACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.04, C:0.46, G:0.25, T:0.25
Consensus pattern (21 bp):
CGGTCCCCCTCTGCATGCTGC
Found at i:15691330 original size:26 final size:26
Alignment explanation
Indices: 15691289--15691341 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15691279 CTGGTCTGAT
15691289 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
15691315 CTTAGACTCGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
15691341 C
1 C
15691342 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15691490 original size:343 final size:343
Alignment explanation
Indices: 15691076--15691711 Score: 898
Period size: 343 Copynumber: 1.9 Consensus size: 343
15691066 GCATGCTGCC
* * * * * * *
15691076 GGTCCCCCTCTGCATGTTGCCGGTCCAGCTGCCACAACCTTCGATCCGACTAGGGTATAGATATG
1 GGTCCCCCTCTGCATGTTGCCAGACCAGCAGCCACAACCCTCAATCCAACTAGGGTATAGACATG
* ** * *
15691141 GAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCTACCGGAGA
66 GAATGAACTCCCTATAACTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGACCGGAGA
* * * *
15691206 GGCAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTGCTGTCACAA
131 GGCAGAAAGCGCAAGTCGGGGATCAGCCCGATCCACCCTGCATGCTATCGATCCTGCTGTCACAA
* *
15691271 CCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT-CGGGATGAACTC
196 CCCTCGATCTAGTCTGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAC-GGATGAACTC
** *
15691335 TGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAACCGGTCGAAGAGGCATAATGC
260 CATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAACCGGTCGAAGAGGCATAATGC
15691400 GCAAGCCGAGGATCGACCA
325 GCAAGCCGAGGATCGACCA
* * *
15691419 GGTCCCCTTCTGCATGTTGCCAGACCCGCAGCCACAACCCTCAATCTAACTAGGGCT-TAGACAT
1 GGTCCCCCTCTGCATGTTGCCAGACCAGCAGCCACAACCCTCAATCCAACTAGGG-TATAGACAT
* *
15691483 GGAATGAACTCCCTATAACTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGATCGGAG
65 GGAATGAACTCCCTATAACTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGACCGGAG
* * * * *
15691548 AGGCAGAAAGCGCAAGTCGGGGATCAGCCCGGTCCACCCTGCGTGCTGTCGATCCTGTTGTCGCA
130 AGGCAGAAAGCGCAAGTCGGGGATCAGCCCGATCCACCCTGCATGCTATCGATCCTGCTGTCACA
* * * * *
15691613 ACCGTTGATCTAGTTTGATCTTAGATTGAGAATGAACTTCGTATGCTTGGACTACGGATGAACTC
195 ACCCTCGATCTAGTCTGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTACGGATGAACTC
* *
15691678 CATATGCCTAAGTCATCCCACGAAACGAGCGTGC
260 CATATGCATAAGTCAACCCACGAAACGAGCGTGC
15691712 AGGCACTCAA
Statistics
Matches: 253, Mismatches: 38, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
343 251 0.99
344 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (343 bp):
GGTCCCCCTCTGCATGTTGCCAGACCAGCAGCCACAACCCTCAATCCAACTAGGGTATAGACATG
GAATGAACTCCCTATAACTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGACCGGAGA
GGCAGAAAGCGCAAGTCGGGGATCAGCCCGATCCACCCTGCATGCTATCGATCCTGCTGTCACAA
CCCTCGATCTAGTCTGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTACGGATGAACTCC
ATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAACCGGTCGAAGAGGCATAATGCG
CAAGCCGAGGATCGACCA
Found at i:15692806 original size:159 final size:156
Alignment explanation
Indices: 15692379--15692874 Score: 433
Period size: 158 Copynumber: 3.1 Consensus size: 156
15692369 TACTCCGTAT
* *
15692379 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15692444 CCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTGTCCATCT
66 CCGGCC-GAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCG-TCCCCCCTACATGCTGTCCATCC
* ** * * **
15692509 TGCTGCCGTAACCTTCGGTCTGGTCTGA
129 CGCTGCCCCAACCCTCGATCCAGTCTGA
* * * * * ** *
15692537 TCTTAGAC-TGGTAATGAACTCCGTATGCATAGGTCAACCCACGAAACAAGCGTGCGGGCATTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** **
15692601 GCCGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCTTGGTCCCTCTCTATGTGCTG-CTGG
65 GCCGGCCG-AGAGGCAAAATGCGCAAGCCGGGGATCGGC-TCGTCCC-CCCTACATGCTGTC-CA
*
15692665 TCCCGCTGCCCCAACCCTCGATCCAG-CTGGG
126 TCCCGCTGCCCCAACCCTCGATCCAGTCT-GA
* * *
15692696 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15692761 CCGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCC
66 CCGGCC-GAGAGGCAAAATGCGCAAGCCGGGGATCGGCTC-GTCCCCCCTACATGCTGTCCATCC
* *** * *
15692826 TGCTGTTGCAACCCTCGGTCCGGTCTGA
129 CGCTGCCCCAACCCTCGATCCAGTCTGA
* *
15692854 TCTTAGA-TTGAGAATGAACTC
1 GCTTAGACATG-GAATGAACTC
15692875 TATATGCTTA
Statistics
Matches: 262, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 134 0.51
159 118 0.45
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGTCCCCCCTACATGCTGTCCATCCCG
CTGCCCCAACCCTCGATCCAGTCTGA
Found at i:15692906 original size:26 final size:26
Alignment explanation
Indices: 15692855--15692906 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15692845 CCGGTCTGAT
*
15692855 CTTAGATTGAGAATGAACTCTATATG
1 CTTAGATTGAGAATGAACTCCATATG
* * *
15692881 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGAGAATGAACTCCATATG
15692907 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGATTGAGAATGAACTCCATATG
Found at i:15693615 original size:26 final size:26
Alignment explanation
Indices: 15693577--15693629 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15693567 GGCTCAAAAT
15693577 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
15693603 CTTAGATAT-GGAATGAACTCCGTATG
1 CTTAGAT-TGGGAATGAACTCCGTATG
15693629 C
1 C
15693630 CTAAGATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:15693645 original size:27 final size:26
Alignment explanation
Indices: 15693588--15693646 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
15693578 TTAGATTGGG
* ***
15693588 AATGAACTCCGTATGCTTAGATATGG
1 AATGAACTCCGTATGCTAAGATAACC
15693614 AATGAACTCCGTATGCCTAAGATAACC
1 AATGAACTCCGTATG-CTAAGATAACC
*
15693641 CATGAA
1 AATGAA
15693647 ACGAGCGTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (26 bp):
AATGAACTCCGTATGCTAAGATAACC
Found at i:15693905 original size:159 final size:160
Alignment explanation
Indices: 15693602--15694019 Score: 454
Period size: 159 Copynumber: 2.6 Consensus size: 160
15693592 AACTCCGTAT
*
15693602 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGAT-AACCCATGAAACGAGCGTGCGGGCACTC
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAG-TCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * **
15693665 AGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCCTGGATGCTGTTGA
65 AGTCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCCTGGATGCTGCAGA
** ** * *
15693730 TCCTGCTACCGTAACCCTTGGTTCAGTCT-GA
130 TCCCACTACCACAACCCTCGGTTC-GGCTGGA
* * * * *
15693761 TCTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
15693825 GCCGATCGAAGAGGCATAATGCACAAGTCAGGGATCGACCCGGTCCCCCTCTGCG-TGCTGCCAG
66 GTCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCCTG-GATGCTG-CAG
* *
15693889 -TCCCACTGCCACAACCCTCGGTTCGGCTGGG
129 ATCCCACTACCACAACCCTCGGTTCGGCTGGA
* * * * *
15693920 GCTTAGAC-ATGGAATGAACTCCCTACGCCTAAGCCGACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
15693984 GTCGGTCGAAGAGGCAGAGTACGCAAGCCAGGGATC
66 GTCGATCGAAGAGGCAGAATGCACAAGCCAGGGATC
15694020 AGCTCAGTCC
Statistics
Matches: 212, Mismatches: 41, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
158 5 0.02
159 203 0.96
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (160 bp):
GCTTAGACTATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
GTCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCCTGGATGCTGCAGAT
CCCACTACCACAACCCTCGGTTCGGCTGGA
Found at i:15694115 original size:26 final size:26
Alignment explanation
Indices: 15694079--15694131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15694069 CTGGTCCGAT
15694079 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15694105 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15694131 C
1 C
15694132 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15694229 original size:184 final size:184
Alignment explanation
Indices: 15693919--15694479 Score: 597
Period size: 196 Copynumber: 3.0 Consensus size: 184
15693909 GTTCGGCTGG
* * * **
15693919 GGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCGACCCATGAAACGAGCGTGCGGGTGCTCA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCA
* * * * * * *
15693984 GTCGGTCGAAGAGGCAGAGTACGCAAGCCAGGGATCAGCTCAGTCCCCCATGCGTGCTACCGATC
66 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATC
*
15694049 CTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATA
131 CTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATA
* * * *
15694103 TGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTC
1 GGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTC
* * * * *
15694167 AGCCAGTCGAAGAGGCAGAATGTGCAAACCGGGGATTGGCTCGGTCCCCCCTGCATGCTACCGAT
65 AGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGAT
* * *
15694232 CCTGCTGCTGGTCCTACTACCGTAACCCTC-AGTCCGATCCGATCTTAGACTGGGAAAGAACTCC
130 -C--CTGCT-G------T--CGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCC
*
15694296 GTA
182 ATA
* * * *
15694299 GGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTTA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCA
* * * * * * **
15694364 GCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGACCGAC-CAGGTCCCCCCATGCGTGCTGTCGA
66 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GGTCCCCCC-TGCGTGCTACCGA
* *
15694428 TCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
129 TCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTC
15694480 TGTATGCCTA
Statistics
Matches: 307, Mismatches: 52, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
183 1 0.00
184 106 0.35
185 38 0.12
186 1 0.00
187 5 0.02
188 1 0.00
193 1 0.00
194 6 0.02
195 2 0.01
196 134 0.44
197 12 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (184 bp):
GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCA
GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATC
CTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATA
Found at i:15694304 original size:26 final size:26
Alignment explanation
Indices: 15694275--15694324 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15694265 CCGATCCGAT
*
15694275 CTTAGAC-TGGGAAAGAACTCCGTAGG
1 CTTAGACAT-GGAAAGAACTACGTAGG
*
15694301 CTTAGACATGGAATGAACTACGTA
1 CTTAGACATGGAAAGAACTACGTA
15694325 TGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTACGTAGG
Found at i:15694555 original size:158 final size:157
Alignment explanation
Indices: 15694301--15694802 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 157
15694291 ACTCCGTAGG
* * *
15694301 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
* * * *
15694366 CGGCCGGAGAGGCAGAATGCACAAGCTGGGGACCGACCAGGTCCCCCCATGCGTGCTGTCGATCC
66 TGG-CGGAGAGGCAGAATGCGCAAGCCGGGGACCG-CCCGGTCCCCCCATGCGTGCTGTCGATCC
* *
15694431 TGCTGCCGCAACCCTCGATCCGGTCTGAT
129 TGCTGTCGCAACCCTCGGTCCGGTCTGAT
* * * *
15694460 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTC-ACCCACGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* ** **
15694523 CTGGCAGGAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTC-TGCGTGCTACCGAT
65 CTGGC-GGAGAGGCAGAATGCGCAAGCCGGGGA-CCGCCCGGTCCCCC-CATGCGTGCTGTCGAT
* * * * **
15694587 CCCGCTATCACAACCCTTGGTCCGG-CTGGGG
127 CCTGCTGTCGCAACCCTCGGTCCGGTCT-GAT
* * * * * *
15694618 CTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACCAAACGGGCGTGCGGGTGCTTG-G
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGC-TGAG
* * *
15694682 -TCGGTCGGAGAGGCAGATTGCGCAAGTCGGGGATCCGCCCGGT-CCCCCATGCATGCTGTCGAT
65 CT-GG-CGGAGAGGCAGAATGCGCAAGCCGGGGA-CCGCCCGGTCCCCCCATGCGTGCTGTCGAT
* * * *
15694745 CCTACTGTCGCAACCTTCGGTCCGATCCGAT
127 CCTGCTGTCGCAACCCTCGGTCCGGTCTGAT
15694776 CTTAGAC-TGAGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
15694803 TTAGACATGG
Statistics
Matches: 277, Mismatches: 53, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
157 6 0.02
158 180 0.65
159 88 0.32
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
TGGCGGAGAGGCAGAATGCGCAAGCCGGGGACCGCCCGGTCCCCCCATGCGTGCTGTCGATCCTG
CTGTCGCAACCCTCGGTCCGGTCTGAT
Found at i:15694805 original size:26 final size:26
Alignment explanation
Indices: 15694776--15694826 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15694766 CCGATCCGAT
*
15694776 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACCCCGTATG
15694802 CTTAGACATGGAATGAACCCCGTAT
1 CTTAGACATGGAATGAACCCCGTAT
15694827 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACCCCGTATG
Found at i:15694891 original size:184 final size:184
Alignment explanation
Indices: 15694621--15694986 Score: 438
Period size: 184 Copynumber: 2.0 Consensus size: 184
15694611 GCTGGGGCTG
* ** * * * *
15694621 AGACATGGAATGAACTCCCTATGCCTAAGCCAACACACCAAACGGGCGTGCGGGTGCTTGGTCGG
1 AGACATGGAATGAACTCCCTATACCTAAGCCAACACACCAAACAAGCATGCGGGCGCTTAGTCGA
** * ** *
15694686 TCGGAGAGGCAGATTGCGCAAGTCGGGGATCC-GCCCGGT-CCCCCATGCATGCTGTCGATCCTA
66 TCGGAGAGGCAGAAAGCGCAAGTCGAGGA-CCGGCCCAATCCCCCCATGCATGCTATCGATCC-A
* * * *
15694749 -CTGTCGCAACCTTCGGTCC-GATCCGATCTTAGACTGAGAATGAACTCCGTATGCTT
129 GCT-CCGCAACCCTCGGCCCAG-TCCCATCTTAGACTGAGAATGAACTCCGTATGCTT
* *
15694805 AGACATGGAATGAAC-CCCGTATACCTAAGCCAACCCACGAAACAAGCATGCGGGCG-TTCAGTC
1 AGACATGGAATGAACTCCC-TATACCTAAGCCAACACACCAAACAAGCATGCGGGCGCTT-AGTC
* *
15694868 GATCGGAGAGGCAGAAAGCGCAAGTTGAGGACCGGCCCAATCCCCCCATGCATGCTATTGATCCA
64 GATCGGAGAGGCAGAAAGCGCAAGTCGAGGACCGGCCCAATCCCCCCATGCATGCTATCGATCCA
*
15694933 GCTCCGCAACCCTCGGCCCAGTCCCATCTTAGACTGGGAATGAACTCCGTATGC
129 GCTCCGCAACCCTCGGCCCAGTCCCATCTTAGACTGAGAATGAACTCCGTATGC
15694987 CTGAGTCAAC
Statistics
Matches: 154, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
183 7 0.05
184 124 0.81
185 23 0.15
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (184 bp):
AGACATGGAATGAACTCCCTATACCTAAGCCAACACACCAAACAAGCATGCGGGCGCTTAGTCGA
TCGGAGAGGCAGAAAGCGCAAGTCGAGGACCGGCCCAATCCCCCCATGCATGCTATCGATCCAGC
TCCGCAACCCTCGGCCCAGTCCCATCTTAGACTGAGAATGAACTCCGTATGCTT
Found at i:15694914 original size:697 final size:699
Alignment explanation
Indices: 15693575--15694924 Score: 1751
Period size: 697 Copynumber: 1.9 Consensus size: 699
15693565 ATGGCTCAAA
* * * * * *
15693575 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGATAAC
1 ATCTTAGACTGGGAAAGAACTCCGTAGGCTTAGACATGGAATGAACTACGTATGCCTAAGACAAC
** * * * * **
15693640 CCATGAAACGAGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGAC
66 CCACAAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGAC
* * * * * * *
15693705 CCGGTCCCCCCCTGGATGCTGTTGATCCTGCTACCGTAACCCTTGGTTCAGTCTGATCTTAGACT
131 CAGGTCCCCCCATGGATGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACT
*
15693770 AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCGATCGAA
196 AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCGAGCGAA
* * *
15693835 GAGGCATAATGCACAAGTCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAGTCCCACTGCCA
261 GAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTACCAGTCCCACTACCA
* * * * **
15693900 CAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCGACCCATGAA
326 CAACCCTCGGTCCGGCTGGGGCTGAGACATGGAATGAACTCCCTACGCCTAAGCCAACACACCAA
*
15693965 ACGAGCGTGCGGGTGCTCAGTCGGTCGAAGAGGCAGAGTACGCAAGCCAGGGATCAGCTCAGTCC
391 ACGAGCGTGCGGGTGCTCAGTCGGTCGAAGAGGCAGAGTACGCAAGCCAGGGATCAGCCCAGTCC
* * * * *
15694030 CCCATGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGA
456 CCCATGCATGCTACCGATCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGA
* * * * *
15694095 ACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCG
521 ACTCCATATGCTTAGACTGGGAATGAACCCCGTATACCTAAGCCAACCCACAAAACAAGCATGCG
* * * * ** * **
15694160 GGTGCTCAGCCAGTCGAAGAGGCAGAATGTGCAAACCGGGGATTGGCTCGGTCCCCCC-TGCATG
586 GGCGCTCAGCCAGTCGAAGAGGCAGAAAGCGCAAACCGAGGACCGGCCCAATCCCCCCATGCATG
15694224 CTACCGATCCTGCTGCTGGTCCTACTACCGTAACCCTCAGTCCGATCCG
651 CTACCGATCCTGCTGCTGGTCCTACTACCGTAACCCTCAGTCCGATCCG
*
15694273 ATCTTAGACTGGGAAAGAACTCCGTAGGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAAAGAACTCCGTAGGCTTAGACATGGAATGAACTACGTATGCCTAAGACAAC
* * * *
15694338 CCACAAAACGAGCGTACGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGACCGAC
66 CCACAAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGAC
* *
15694403 CAGGTCCCCCCATGCG-TGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGAC
131 CAGGTCCCCCCATG-GATGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGAC
* * * * * *
15694467 TGGGAATGAACTCTGTATGCCTAAGTC-ACCCACGAAATGAGCGTGCGGGCGCTGAGCTG-GCAG
195 TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCGAGC-G
* * * * * *
15694530 GAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCGTGCTACC-GATCCCGCTA
259 AAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTACCAG-TCCCACTA
* * *
15694594 TCACAACCCTTGGTCCGGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACACAC
323 CCACAACCCTCGGTCCGGCTGGGGCTGAGACATGGAATGAACTCCCTACGCCTAAGCCAACACAC
* ** * * * * * * *
15694659 CAAACGGGCGTGCGGGTGCTTGGTCGGTCGGAGAGGCAGATTGCGCAAGTCGGGGATCCGCCCGG
388 CAAACGAGCGTGCGGGTGCTCAGTCGGTCGAAGAGGCAGAGTACGCAAGCCAGGGATCAGCCCAG
** * *
15694724 TCCCCCATGCATGCTGTCGATCCTACTGTCGCAACCTTCGGTCCGATCCGATCTTAGACTGAGAA
453 TCCCCCATGCATGCTACCGATCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAA
* *
15694789 TGAACTCCGTATGCTTAGACAT-GGAATGAACCCCGTATACCTAAGCCAACCCACGAAACAAGCA
518 TGAACTCCATATGCTTAGAC-TGGGAATGAACCCCGTATACCTAAGCCAACCCACAAAACAAGCA
* * * ***
15694853 TGCGGGCGTTCAGTC-GATCGGAGAGGCAGAAAGCGCAAGTTGAGGACCGGCCCAATCCCCCCAT
582 TGCGGGCGCTCAGCCAG-TCGAAGAGGCAGAAAGCGCAAACCGAGGACCGGCCCAATCCCCCCAT
15694917 GCATGCTA
646 GCATGCTA
15694925 TTGATCCAGC
Statistics
Matches: 551, Mismatches: 95, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
696 3 0.01
697 349 0.63
698 198 0.36
699 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (699 bp):
ATCTTAGACTGGGAAAGAACTCCGTAGGCTTAGACATGGAATGAACTACGTATGCCTAAGACAAC
CCACAAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGAC
CAGGTCCCCCCATGGATGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACT
AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCGAGCGAA
GAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTACCAGTCCCACTACCA
CAACCCTCGGTCCGGCTGGGGCTGAGACATGGAATGAACTCCCTACGCCTAAGCCAACACACCAA
ACGAGCGTGCGGGTGCTCAGTCGGTCGAAGAGGCAGAGTACGCAAGCCAGGGATCAGCCCAGTCC
CCCATGCATGCTACCGATCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGA
ACTCCATATGCTTAGACTGGGAATGAACCCCGTATACCTAAGCCAACCCACAAAACAAGCATGCG
GGCGCTCAGCCAGTCGAAGAGGCAGAAAGCGCAAACCGAGGACCGGCCCAATCCCCCCATGCATG
CTACCGATCCTGCTGCTGGTCCTACTACCGTAACCCTCAGTCCGATCCG
Found at i:15695072 original size:501 final size:500
Alignment explanation
Indices: 15694258--15695382 Score: 1402
Period size: 501 Copynumber: 2.2 Consensus size: 500
15694248 CTACCGTAAC
* * * *
15694258 CCTCAGTCCGATCCGATCTTAGACTGGGAAAGAACTCCGTAGGCTTAGACATGGAATGAACTACG
1 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCG
* * * * * *
15694323 TATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTT-AGCCGGCCGGAGAGGCAGAATGCA
66 TATGCCTAAGCCAACCCACGAAAC-AGCATGCGGGCG-TTCAGTCGACCGGAGAGGCAGAAAGCA
* * * * * *
15694387 CAAGCTGGGGACCGACCAGGTCCCCCCATGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCC
129 CAAGCTGAGGACCGACCAGATCCCCCCATGCATGCTATCGATCCAGCTGCCGCAACCCTCGACCC
* ** * **
15694452 GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCACCCACGAAATGAGCGTGCGGGC
194 AGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCACCCACGAAACAAGCGTGCGGGC
* * * *
15694517 GCTGAGCTGGCAGGAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCGTGCTA
259 GCTGAGCTGGCAGGAGAGGCATAATACGAAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTA
* * * *
15694582 CCGATCCCGCTATCACAACCCTTGGTCCGGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCT
324 CCGATCCCGCTACCACAACCCTCGATCCGGCTAGGGCTGAGACATGGAATGAACTCCCTATGCCT
* * * ** * * * *
15694647 AAGCCAACACACCAAACGGGCGTGCGGGTGCTTGGTCGGTCGGAGAGGCAGATTGCGCAAGTCGG
389 AAGCCAACACACCAAACGGGCATACGGGCGCTCAGTCGATCAGAGAGGCAGATTGCGCAAGCCAG
* *
15694712 GGATCCGCCCGGTCC-CCCATGCATGCTGTCGATCCTACTGTCGC-AA
454 GGATCCGCCCGATCCTCCC-TGCATGCTGCCGATCCTACTGTCGCAAA
* *
15694758 CCTTCGGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACCCC
1 CC-TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCC
* * *
15694823 GTATACCTAAGCCAACCCACGAAACAAGCATGCGGGCGTTCAGTCGATCGGAGAGGCAGAAAGCG
65 GTATGCCTAAGCCAACCCACGAAAC-AGCATGCGGGCGTTCAGTCGACCGGAGAGGCAGAAAGCA
* * * *
15694888 CAAGTTGAGGACCGGCCCA-ATCCCCCCATGCATGCTATTGATCCAGCT-CCGCAACCCTCGGCC
129 CAAGCTGAGGACC-GACCAGATCCCCCCATGCATGCTATCGATCCAGCTGCCGCAACCCTCGACC
* *
15694951 CAGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCATGAAACAAGCGTGCGG
193 CAGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAACAAGCGTGCGG
* * *
15695016 GCGTTGAG-TCGGCCGGAGAGGCATAATACGAAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTG
257 GCGCTGAGCT-GGCAGGAGAGGCATAATACGAAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTG
* * ** * * *
15695080 CTGCCGGTCTTGTTACCACAACCCTCGATTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATG
321 CTACCGATCCCGCTACCACAACCCTCGATCCGGCTAGGGCTGAGACATGGAATGAACTCCCTATG
* *
15695145 CCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAGTCGATCAGAGAGGCAGATTGCGCAAGC
386 CCTAAGCCAACACACCAAACGGGCATACGGGCGCTCAGTCGATCAGAGAGGCAGATTGCGCAAGC
* *
15695210 CAGGGATCGGCCCGATCCTCCCTGCGTGCTGCCGATCCTACTGTCGCAAA
451 CAGGGATCCGCCCGATCCTCCCTGCATGCTGCCGATCCTACTGTCGCAAA
* ** * * *
15695260 CCTCGGTTCGATCTAATTTTAGATTGGGAATGAACTCCATATGCTTAGAC-TAGGAATGAACTCC
1 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCC
* * * * *
15695324 ATATGCCTAAGCTAACCCACGAAAC-GGATGTGCGGGCGCTCAGTCGACCAGAGAGGCAG
65 GTATGCCTAAGCCAACCCACGAAACAGCA--TGCGGGCGTTCAGTCGACCGGAGAGGCAG
15695383 GTTGAACAAG
Statistics
Matches: 533, Mismatches: 82, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
499 2 0.00
500 57 0.11
501 463 0.87
502 11 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (500 bp):
CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCG
TATGCCTAAGCCAACCCACGAAACAGCATGCGGGCGTTCAGTCGACCGGAGAGGCAGAAAGCACA
AGCTGAGGACCGACCAGATCCCCCCATGCATGCTATCGATCCAGCTGCCGCAACCCTCGACCCAG
TCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCACCCACGAAACAAGCGTGCGGGCGC
TGAGCTGGCAGGAGAGGCATAATACGAAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACC
GATCCCGCTACCACAACCCTCGATCCGGCTAGGGCTGAGACATGGAATGAACTCCCTATGCCTAA
GCCAACACACCAAACGGGCATACGGGCGCTCAGTCGATCAGAGAGGCAGATTGCGCAAGCCAGGG
ATCCGCCCGATCCTCCCTGCATGCTGCCGATCCTACTGTCGCAAA
Found at i:15695912 original size:11 final size:11
Alignment explanation
Indices: 15695896--15695928 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
15695886 CCCCAATGCT
15695896 CTCCGGCGATG
1 CTCCGGCGATG
15695907 CTCCGGCGATG
1 CTCCGGCGATG
15695918 CTCCGGCGATG
1 CTCCGGCGATG
15695929 GTGCCTCAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.09, C:0.36, G:0.36, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:15696369 original size:26 final size:26
Alignment explanation
Indices: 15696340--15696392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15696330 CCGATCTGAT
15696340 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15696366 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15696392 C
1 C
15696393 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15697657 original size:26 final size:26
Alignment explanation
Indices: 15697628--15697678 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15697618 GGTCTGATCT
*
15697628 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
15697654 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
15697679 TTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Done.