Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167951.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50678
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Found at i:5569 original size:24 final size:25
Alignment explanation
Indices: 5516--5587 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 25
5506 ATCAATTCAA
*
5516 TAATATAACATTAATAATTATAATTTT
1 TAATATAA-ATT-ATAATTATAATTCT
*
5543 TAATATAAATTAT-ATTTTAATTCT
1 TAATATAAATTATAATTATAATTCT
*
5567 TAACATAAATTATTAA-TATAA
1 TAATATAAATTA-TAATTATAA
5588 CAAATAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 20 0.51
25 7 0.18
26 4 0.10
27 8 0.21
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (25 bp):
TAATATAAATTATAATTATAATTCT
Found at i:9091 original size:12 final size:12
Alignment explanation
Indices: 9074--9098 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9064 ACCGAATGTA
9074 AACATCCCATTC
1 AACATCCCATTC
9086 AACATCCCATTC
1 AACATCCCATTC
9098 A
1 A
9099 GCATGCGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (12 bp):
AACATCCCATTC
Found at i:9684 original size:21 final size:22
Alignment explanation
Indices: 9655--9697 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
9645 TTCACGGGAA
*
9655 GCATTTATGGTCCA-TTAAATT
1 GCATATATGGTCCATTTAAATT
9676 GCATATATGGTCCATTTAAATT
1 GCATATATGGTCCATTTAAATT
9698 CTACAATTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (22 bp):
GCATATATGGTCCATTTAAATT
Found at i:9956 original size:17 final size:19
Alignment explanation
Indices: 9917--9957 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
9907 CAGAAAAAAT
*
9917 AAAAAAAATGAAAATTTAG
1 AAAAAAAATGAAAATTTAC
9936 AAAAAAAAT-AAAA-TTAC
1 AAAAAAAATGAAAATTTAC
9953 AAAAA
1 AAAAA
9958 TTTAGAGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (19 bp):
AAAAAAAATGAAAATTTAC
Found at i:11975 original size:2 final size:2
Alignment explanation
Indices: 11968--11995 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11958 ATTTTGACTA
11968 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11996 GAAGCCGGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13133 original size:19 final size:20
Alignment explanation
Indices: 13109--13153 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
13099 GTTCTGGCCC
13109 AATTTTAGTTTTAA-TTTTT
1 AATTTTAGTTTTAATTTTTT
13128 AATTTTAGTTTTAATTTTTT
1 AATTTTAGTTTTAATTTTTT
13148 AATTTT
1 AATTTT
13154 TTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (20 bp):
AATTTTAGTTTTAATTTTTT
Found at i:13169 original size:8 final size:9
Alignment explanation
Indices: 13136--13183 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
13126 TTAATTTTAG
13136 TTTTAATT-
1 TTTTAATTA
*
13144 TTTTAATTT
1 TTTTAATTA
13153 TTTTAATTA
1 TTTTAATTA
13162 TTTT-ATTA
1 TTTTAATTA
**
13170 TTTTCGTTA
1 TTTTAATTA
13179 TTTTA
1 TTTTA
13184 TTTTTCTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.46
9 19 0.54
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (9 bp):
TTTTAATTA
Found at i:13173 original size:17 final size:17
Alignment explanation
Indices: 13136--13185 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
13126 TTAATTTTAG
*
13136 TTTTAATT-TTTTAATTT
1 TTTTAATTATTTT-ATTA
13153 TTTTAATTATTTTATTA
1 TTTTAATTATTTTATTA
**
13170 TTTTCGTTATTTTATT
1 TTTTAATTATTTTATT
13186 TTTCTTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 25 0.86
18 4 0.14
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (17 bp):
TTTTAATTATTTTATTA
Found at i:13409 original size:28 final size:26
Alignment explanation
Indices: 13358--13411 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
13348 ACAAGAATCA
*
13358 GAAAAAAATCAGAGAGGGATCAGAAG
1 GAAAAAAATCAGAGAGGGAACAGAAG
13384 GAAAAGAAAT-AGAGAGGTGAAACAGAAG
1 GAAAA-AAATCAGAGAGG-G-AACAGAAG
13412 CTAAAAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 12 0.50
27 5 0.21
28 7 0.29
ACGTcount: A:0.56, C:0.06, G:0.31, T:0.07
Consensus pattern (26 bp):
GAAAAAAATCAGAGAGGGAACAGAAG
Found at i:13991 original size:11 final size:10
Alignment explanation
Indices: 13959--13993 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
13949 TTTTAATTAT
*
13959 TAAATTAAAA
1 TAAAGTAAAA
13969 TAAAGTAAAA
1 TAAAGTAAAA
13979 TAAAGTAAAAA
1 TAAAGT-AAAA
13990 TAAA
1 TAAA
13994 ATTTTAGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.65
11 8 0.35
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (10 bp):
TAAAGTAAAA
Found at i:15749 original size:51 final size:51
Alignment explanation
Indices: 15645--15750 Score: 131
Period size: 51 Copynumber: 2.1 Consensus size: 51
15635 ATGCATCTTT
* * **
15645 ATGTTTTAAGCATTATCATGTTACATCATTCTATGCATCATTTCCATTCTC
1 ATGTTTTAAGCATTATCATATCACATCATTCTATGCATCATTTCCATAATC
* * * * *
15696 ATGTTTTAAGCATTATTATATCATATCATTTTATGCATTATTTTCATAATC
1 ATGTTTTAAGCATTATCATATCACATCATTCTATGCATCATTTCCATAATC
15747 ATGT
1 ATGT
15751 CTAATGCCAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (51 bp):
ATGTTTTAAGCATTATCATATCACATCATTCTATGCATCATTTCCATAATC
Found at i:25157 original size:10 final size:10
Alignment explanation
Indices: 25130--25162 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
25120 GAGAAAAAAT
25130 AAAAAAT-AA
1 AAAAAATGAA
25139 AAAATAATGAA
1 AAAA-AATGAA
25150 AAAAAATGAA
1 AAAAAATGAA
25160 AAA
1 AAA
25163 GGACTCAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.18
10 12 0.55
11 6 0.27
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (10 bp):
AAAAAATGAA
Found at i:26216 original size:26 final size:26
Alignment explanation
Indices: 26179--26235 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
26169 AGTTCGTTGC
*
26179 CTCTATTCAGAGGAGCTATTTATTTT
1 CTCTATTCAGAGGAGCCATTTATTTT
*
26205 TTCTATTCAGAGGAGCCATTTATTTT
1 CTCTATTCAGAGGAGCCATTTATTTT
26231 CTCTA
1 CTCTA
26236 AGTTCGTTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.46
Consensus pattern (26 bp):
CTCTATTCAGAGGAGCCATTTATTTT
Found at i:26267 original size:41 final size:41
Alignment explanation
Indices: 26206--26435 Score: 298
Period size: 41 Copynumber: 5.6 Consensus size: 41
26196 ATTTATTTTT
* *
26206 TCTATTCAGAGGAGCCATTTATTTTCTCTAAGTTCGTTGCC
1 TCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTCGTTGCC
* **
26247 TCTATTCAAAGGAGCTATTTATTTTCTCAAAGTTTATTGCC
1 TCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTCGTTGCC
* * * *
26288 TCTATTCAGAGGAGCCATTTATTTTTTAAAAGTTTGTTGCC
1 TCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTCGTTGCC
* * * * *
26329 TCTATTTAAAAGAGCCATTTATTTCCTAAAAGTTCATTGCC
1 TCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTCGTTGCC
* *
26370 TCTATTTAAAGGAGCCATTTATTTTCTCTAAGTTCGTTGCC
1 TCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTCGTTGCC
* *
26411 TCTATTCAGAGGGGCCATTTATTTT
1 TCTATTCAAAGGAGCCATTTATTTT
26436 TGAAGTTTGT
Statistics
Matches: 164, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 164 1.00
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.43
Consensus pattern (41 bp):
TCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTCGTTGCC
Found at i:26334 original size:82 final size:81
Alignment explanation
Indices: 26206--26463 Score: 338
Period size: 82 Copynumber: 3.2 Consensus size: 81
26196 ATTTATTTTT
*
26206 TCTATTCAGAGGAGCCATTTATTTTCTCTAAGTTCGTTGCCTCTATTCAAAGGAGCTATTTATTT
1 TCTATTCAGAGGAGCCATTTATTTTCTCTAAGTTCGTTGCCTCTATTCAAAGGAGCCATTTATTT
26271 TCTCAAAGTTTATTGCC
66 TCT-AAAGTTTATTGCC
* ** * * *
26288 TCTATTCAGAGGAGCCATTTATTTTTTAAAAGTTTGTTGCCTCTATTTAAAAGAGCCATTTATTT
1 TCTATTCAGAGGAGCCATTTATTTTCTCTAAGTTCGTTGCCTCTATTCAAAGGAGCCATTTATTT
* *
26353 CCTAAAAGTTCATTGCC
66 TCT-AAAGTTTATTGCC
* * * *
26370 TCTATTTAAAGGAGCCATTTATTTTCTCTAAGTTCGTTGCCTCTATTCAGAGGGGCCATTTATTT
1 TCTATTCAGAGGAGCCATTTATTTTCTCTAAGTTCGTTGCCTCTATTCAAAGGAGCCATTTATTT
* * *
26435 T-TGAAGTTTGTTGCT
66 TCTAAAGTTTATTGCC
*
26450 TCTATTTAGAGGAG
1 TCTATTCAGAGGAG
26464 TTTTGTTTAA
Statistics
Matches: 150, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
80 22 0.15
81 1 0.01
82 127 0.85
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.43
Consensus pattern (81 bp):
TCTATTCAGAGGAGCCATTTATTTTCTCTAAGTTCGTTGCCTCTATTCAAAGGAGCCATTTATTT
TCTAAAGTTTATTGCC
Found at i:26428 original size:123 final size:121
Alignment explanation
Indices: 26217--26457 Score: 356
Period size: 123 Copynumber: 2.0 Consensus size: 121
26207 CTATTCAGAG
* ** * * *
26217 GAGCCATTTATTTTCTCTAAGTTCGTTGCCTCTATTCAAAGGAGCTATTTATTTTCTCAAAGTTT
1 GAGCCATTTATTTCCTAAAAGTTCATTGCCTCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTC
26282 ATTGCCTCTATTCAGAGGAGCCATTTATTTTTTAAAAGTTTGTTGCCTCTATTTAAAA
66 ATTGCCTCTATTCAGAGGAGCCATTTA-TTTTT-AAAGTTTGTTGCCTCTATTTAAAA
* *
26340 GAGCCATTTATTTCCTAAAAGTTCATTGCCTCTATTTAAAGGAGCCATTTATTTTCTCTAAGTTC
1 GAGCCATTTATTTCCTAAAAGTTCATTGCCTCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTC
* * * *
26405 GTTGCCTCTATTCAGAGGGGCCATTTATTTTTGAAGTTTGTTGCTTCTATTTA
66 ATTGCCTCTATTCAGAGGAGCCATTTATTTTTAAAGTTTGTTGCCTCTATTTA
26458 GAGGAGTTTT
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
121 19 0.18
122 5 0.05
123 82 0.77
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (121 bp):
GAGCCATTTATTTCCTAAAAGTTCATTGCCTCTATTCAAAGGAGCCATTTATTTTCTCAAAGTTC
ATTGCCTCTATTCAGAGGAGCCATTTATTTTTAAAGTTTGTTGCCTCTATTTAAAA
Found at i:29374 original size:43 final size:43
Alignment explanation
Indices: 29316--29400 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
29306 AGAAAAAGAG
* *
29316 AAAGAAAAATGCGACTAAATTTTTTTATGATGATTTAGATTTA
1 AAAGAAAAATACGACTAAAATTTTTTATGATGATTTAGATTTA
*
29359 AAAGAAAATTACGACTAAAATTTTTTATGATGATTTAGATTT
1 AAAGAAAAATACGACTAAAATTTTTTATGATGATTTAGATTT
29401 GCGTTTAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.40
Consensus pattern (43 bp):
AAAGAAAAATACGACTAAAATTTTTTATGATGATTTAGATTTA
Found at i:34074 original size:17 final size:17
Alignment explanation
Indices: 34030--34070 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
34020 ATAAATAAAT
*
34030 AAAAAATTAAAATTTAG
1 AAAAAATTAAAATTTAC
*
34047 AAAAAAATAAAA-TTAC
1 AAAAAATTAAAATTTAC
34063 AAAAAATT
1 AAAAAATT
34071 TAAAGAAGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAAAATTAAAATTTAC
Found at i:35381 original size:16 final size:16
Alignment explanation
Indices: 35347--35389 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
35337 ATTAATTCAA
**
35347 ATATAAAACATGATTTT
1 ATATAAAA-ATGAAGTT
35364 ATATAAAAATGAAGTT
1 ATATAAAAATGAAGTT
35380 ATATAAAAAT
1 ATATAAAAAT
35390 CTATGAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 16 0.67
17 8 0.33
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (16 bp):
ATATAAAAATGAAGTT
Found at i:35867 original size:52 final size:52
Alignment explanation
Indices: 35800--35899 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
35790 AGACAAAAAA
*
35800 ACTTGTAGAAAAAGAATTTTAAGAG-AAAAGAGATTCTTAATAGACAAGTTTG
1 ACTTGTAGAAAAAGAATTTCAAGAGAAAAAG-GATTCTTAATAGACAAGTTTG
* *
35852 ACTTGTAGAAGAAGAATTTCAAGAGAAAAAGGATTCTTAATAGGCAAG
1 ACTTGTAGAAAAAGAATTTCAAGAGAAAAAGGATTCTTAATAGACAAG
35900 CTTTTATACT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 39 0.89
53 5 0.11
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (52 bp):
ACTTGTAGAAAAAGAATTTCAAGAGAAAAAGGATTCTTAATAGACAAGTTTG
Found at i:36103 original size:48 final size:48
Alignment explanation
Indices: 36046--36139 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
36036 TGTTTATAAA
*
36046 TGGACTAGAGGAGACTGAGAGGGTCCACATAAGTATGATGCATGGAAG
1 TGGACTAGAGGAGACTAAGAGGGTCCACATAAGTATGATGCATGGAAG
* * * * *
36094 TGGATTAGAGGAGATTAAGAGGGTCCATATAGGTATGATGTATGGA
1 TGGACTAGAGGAGACTAAGAGGGTCCACATAAGTATGATGCATGGA
36140 TACATATAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (48 bp):
TGGACTAGAGGAGACTAAGAGGGTCCACATAAGTATGATGCATGGAAG
Found at i:36749 original size:13 final size:14
Alignment explanation
Indices: 36720--36756 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
36710 CTTGATGGAC
*
36720 AAGAAGACTTGTAA
1 AAGAAGAATTGTAA
36734 AAGAAGAATT-TAA
1 AAGAAGAATTGTAA
36747 AAGAA-AATTG
1 AAGAAGAATTG
36757 ATTATTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 4 0.19
13 8 0.38
14 9 0.43
ACGTcount: A:0.57, C:0.03, G:0.19, T:0.22
Consensus pattern (14 bp):
AAGAAGAATTGTAA
Found at i:36789 original size:51 final size:52
Alignment explanation
Indices: 36725--36828 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 52
36715 TGGACAAGAA
**
36725 GACTTGTAAAAGAAGAATT-TAAAAGAAAATTGATTAT-TAATAGGCAAGTTT
1 GACTTGTAAAAGAAGAATTCTAAAAGAAAAGGGATT-TCTAATAGGCAAGTTT
* * *
36776 GACTTGTAGAAGAAGAATTCTAAGAGGAAAGGGATTTCTAATAGGCAAGTTT
1 GACTTGTAAAAGAAGAATTCTAAAAGAAAAGGGATTTCTAATAGGCAAGTTT
36828 G
1 G
36829 TATACTTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 19 0.41
52 27 0.59
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (52 bp):
GACTTGTAAAAGAAGAATTCTAAAAGAAAAGGGATTTCTAATAGGCAAGTTT
Found at i:40818 original size:34 final size:31
Alignment explanation
Indices: 40762--40843 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 31
40752 TATCAAATTT
* *
40762 TAAAATTTAATTATTTATATATATTATTTCATA
1 TAAAATTTTATTATTTAAATATA-T-TTTCATA
40795 TAAAATTTTATATATTTAAATATATTTTCATA
1 TAAAATTTTAT-TATTTAAATATATTTTCATA
*
40827 TACAATTATTATT-TTTA
1 TAAAATT-TTATTATTTA
40844 TTTTATAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
31 4 0.09
32 14 0.32
33 15 0.34
34 11 0.25
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (31 bp):
TAAAATTTTATTATTTAAATATATTTTCATA
Found at i:41659 original size:170 final size:170
Alignment explanation
Indices: 41372--41718 Score: 552
Period size: 170 Copynumber: 2.0 Consensus size: 170
41362 AAAAATACTC
* *
41372 ACATGTTGAATCTTATAAATATATCAAAATTAAAAATAATTAATATACGATGATTACGTTTTTGT
1 ACAT-TTGAATCTTATAAATATATCAAAACTAAAAATAATTAATATACGATGAATACGTTTTTGT
* * * * *
41437 TGTTGGTTTGTTTTTTTCTATGAAGTGAACTTTCATTTTTTATTTTTAAATTTTTAAACTATTTG
65 TGTTGGTTTGTTTTGTGCGATGAAGTGAACTTTCATTTTTTATTTTTAAATTTATAAACGATTTG
*
41502 ATCAAATCTATGACCTTTTTTCAATTTATTTTAAATTATGA
130 ATCAAATCTATGACCTTTTTTCAATTTATTTTAAATTATAA
**
41543 ACATTTGAATCTTATAAATATATCAAAACTAAAAATAATTAATATATTATGAATACGTTTTTGTT
1 ACATTTGAATCTTATAAATATATCAAAACTAAAAATAATTAATATACGATGAATACGTTTTTGTT
* *
41608 GTTGGCTTT-TTTTGTGCGATGATGTGAACTTTTATTTTTTATTTTTAAATTTATAAACGATTTG
66 GTTGG-TTTGTTTTGTGCGATGAAGTGAACTTTCATTTTTTATTTTTAAATTTATAAACGATTTG
*
41672 ATCAAATCTATGACGTTTTTTCAATTTATTTTAAATTATAA
130 ATCAAATCTATGACCTTTTTTCAATTTATTTTAAATTATAA
41713 ACATTT
1 ACATTT
41719 TAAAAACCTT
Statistics
Matches: 162, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
170 155 0.96
171 7 0.04
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (170 bp):
ACATTTGAATCTTATAAATATATCAAAACTAAAAATAATTAATATACGATGAATACGTTTTTGTT
GTTGGTTTGTTTTGTGCGATGAAGTGAACTTTCATTTTTTATTTTTAAATTTATAAACGATTTGA
TCAAATCTATGACCTTTTTTCAATTTATTTTAAATTATAA
Done.