Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 121 of 129
Found at i:21927336 original size:17 final size:17
Alignment explanation
Indices: 21927314--21927353 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
21927304 TTGAATCGAA
* *
21927314 TTATATATTTTTTTAAT
1 TTATATATTTGTTAAAT
21927331 TTATATATTTGTTAAAT
1 TTATATATTTGTTAAAT
21927348 TT-TATA
1 TTATATA
21927354 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
TTATATATTTGTTAAAT
Found at i:21927433 original size:28 final size:30
Alignment explanation
Indices: 21927386--21927448 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
21927376 TCAAAATTTA
*
21927386 TTTAAATATATTAAAATAATATAT-AAAAT
1 TTTAAATATATTAAAATAATAAATCAAAAT
21927415 TTTAAA-AT-TTAAAATTAATAAATCAAAAT
1 TTTAAATATATTAAAA-TAATAAATCAAAAT
21927444 TTTAA
1 TTTAA
21927449 TTTAATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 6 0.19
28 9 0.29
29 16 0.52
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (30 bp):
TTTAAATATATTAAAATAATAAATCAAAAT
Found at i:21927450 original size:27 final size:26
Alignment explanation
Indices: 21927396--21927453 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
21927386 TTTAAATATA
*
21927396 TTAAAATAATATATAAAATTTTAAAAT
1 TTAAAATAATAAATAAAATTTT-AAAT
21927423 TTAAAATTAATAAATCAAAATTTT-AAT
1 TTAAAA-TAATAAAT-AAAATTTTAAAT
21927450 TTAA
1 TTAA
21927454 TTTAATTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 13 0.46
28 7 0.25
29 8 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (26 bp):
TTAAAATAATAAATAAAATTTTAAAT
Found at i:21927827 original size:2 final size:2
Alignment explanation
Indices: 21927822--21927849 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21927812 CCCCCCCTCC
21927822 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
21927850 GCCTCTGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:21930544 original size:30 final size:30
Alignment explanation
Indices: 21930510--21930568 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
21930500 ATAATACATA
*
21930510 ATTTTTATATAAAATATAATATAAATATAT
1 ATTTTAATATAAAATATAATATAAATATAT
*** *
21930540 ATTTTAATATTTTATATGATATAAATATA
1 ATTTTAATATAAAATATAATATAAATATA
21930569 CAAATCATCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (30 bp):
ATTTTAATATAAAATATAATATAAATATAT
Found at i:21930668 original size:14 final size:15
Alignment explanation
Indices: 21930637--21930675 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
21930627 GTACCAAGAT
*
21930637 TTTTTAATATATTAA
1 TTTTTAATAAATTAA
*
21930652 TTTTTATTAAATT-A
1 TTTTTAATAAATTAA
21930666 TTTTTAATAA
1 TTTTTAATAA
21930676 TAAAATTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTTAATAAATTAA
Found at i:21935255 original size:18 final size:19
Alignment explanation
Indices: 21935222--21935260 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
21935212 TATAAATTTT
21935222 TTATTAA-TATTATTTTAA
1 TTATTAATTATTATTTTAA
* *
21935240 TTATTAATTTTTTTTTTAA
1 TTATTAATTATTATTTTAA
21935259 TT
1 TT
21935261 CCACCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATTAATTATTATTTTAA
Found at i:21937835 original size:16 final size:16
Alignment explanation
Indices: 21937807--21937840 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
21937797 TTAAAAAATG
21937807 AATTTTTTAAAATTTT
1 AATTTTTTAAAATTTT
21937823 AATTTTTTAAAATTTT
1 AATTTTTTAAAATTTT
21937839 AA
1 AA
21937841 CATTTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
AATTTTTTAAAATTTT
Found at i:21941632 original size:13 final size:14
Alignment explanation
Indices: 21941606--21941639 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
21941596 ATATAATATT
21941606 TATTAAAGTTAAAA
1 TATTAAAGTTAAAA
*
21941620 TTTTAAA-TTAAAA
1 TATTAAAGTTAAAA
21941633 TATTAAA
1 TATTAAA
21941640 AAATAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (14 bp):
TATTAAAGTTAAAA
Found at i:21942417 original size:21 final size:20
Alignment explanation
Indices: 21942377--21942417 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
21942367 TAATTATAAT
* *
21942377 TTAAAATTATATAAATTTTA
1 TTAAAATTAAATAAAATTTA
21942397 TTAAAATTTAAATAAAATTTA
1 TTAAAA-TTAAATAAAATTTA
21942418 CATCTATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAAAATTAAATAAAATTTA
Found at i:21943140 original size:12 final size:12
Alignment explanation
Indices: 21943102--21943141 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
21943092 TATATAATTA
21943102 TTTTTAATTAAT
1 TTTTTAATTAAT
*
21943114 TATTTAATTATAT
1 TTTTTAATTA-AT
*
21943127 TTTTTATTTAAT
1 TTTTTAATTAAT
21943139 TTT
1 TTT
21943142 ATATTTATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTTAATTAAT
Found at i:21951023 original size:32 final size:32
Alignment explanation
Indices: 21950986--21951048 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
21950976 TGTAAGGTAC
21950986 CTTTGTTTGAATTTTAGTTATATTTTCTTTAA
1 CTTTGTTTGAATTTTAGTTATATTTTCTTTAA
21951018 CTTTGTTTGAATTTTAGTTATATTTTCTTTA
1 CTTTGTTTGAATTTTAGTTATATTTTCTTTA
21951049 TCTCGTCAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.21, C:0.06, G:0.10, T:0.63
Consensus pattern (32 bp):
CTTTGTTTGAATTTTAGTTATATTTTCTTTAA
Found at i:21962321 original size:42 final size:42
Alignment explanation
Indices: 21962240--21962329 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
21962230 TTTAACTAAT
* * *
21962240 TCATCATTTAAAGTGTTTTTATTGAAGAAATGTCATAAATGA
1 TCATCATTTAAAGGGTTTTTATTCAAGAAATATCATAAATGA
* * *
21962282 TGATCATTTAAAGGGTTTTTTTCTCAA-AAATATCTTAAATGA
1 TCATCATTTAAAGGGTTTTTAT-TCAAGAAATATCATAAATGA
21962324 TCATCA
1 TCATCA
21962330 AATATGATGT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 37 0.93
43 3 0.08
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (42 bp):
TCATCATTTAAAGGGTTTTTATTCAAGAAATATCATAAATGA
Found at i:21975220 original size:16 final size:17
Alignment explanation
Indices: 21975179--21975222 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
21975169 TCCGAAATTA
21975179 ATAAAATATTATTTTTAAT
1 ATAAAATA-T-TTTTTAAT
21975198 ATAAAATATTTTTTAA-
1 ATAAAATATTTTTTAAT
*
21975214 ATTAAATAT
1 ATAAAATAT
21975223 AAAAAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 7 0.29
18 1 0.04
19 8 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATAAAATATTTTTTAAT
Found at i:21975253 original size:12 final size:12
Alignment explanation
Indices: 21975212--21975263 Score: 51
Period size: 11 Copynumber: 4.7 Consensus size: 12
21975202 AATATTTTTT
21975212 AAATTAAATAT-
1 AAATTAAATATA
21975223 AAA--AAATATA
1 AAATTAAATATA
*
21975233 ATA-TAAATATA
1 AAATTAAATATA
21975244 AAATTAAATA-A
1 AAATTAAATATA
21975255 ATAATTAAA
1 A-AATTAAA
21975264 AAATAACATA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
9 6 0.17
10 2 0.06
11 14 0.40
12 13 0.37
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATTAAATATA
Found at i:21975258 original size:20 final size:19
Alignment explanation
Indices: 21975211--21975268 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 19
21975201 AAATATTTTT
21975211 TAAATTAAATATAAAAAATA
1 TAAA-TAAATATAAAAAATA
21975231 TAATATAAATAT--AAAAT-
1 TAA-ATAAATATAAAAAATA
21975248 TAAATAAATAATTAAAAAATA
1 TAAATAAAT-A-TAAAAAATA
21975269 ACATATATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
16 6 0.19
17 4 0.12
18 6 0.19
20 15 0.47
21 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAATAAATATAAAAAATA
Found at i:21975264 original size:18 final size:18
Alignment explanation
Indices: 21975225--21975257 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
21975215 TTAAATATAA
21975225 AAAATATAATATAAATAT
1 AAAATATAATATAAATAT
21975243 AAAAT-TAA-ATAAATA
1 AAAATATAATATAAATA
21975258 ATTAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAATATAATATAAATAT
Found at i:21975275 original size:32 final size:32
Alignment explanation
Indices: 21975212--21975275 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
21975202 AATATTTTTT
* *
21975212 AAATTAAATATAAAAAATATAATATAAATATA
1 AAATTAAATATAAAAAATAAAAAATAAATATA
* *
21975244 AAATTAAATA-AATAATTAAAAAATAACATATA
1 AAATTAAATATAAAAAATAAAAAATAA-ATATA
21975276 TCAAGTTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 12 0.44
32 15 0.56
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (32 bp):
AAATTAAATATAAAAAATAAAAAATAAATATA
Found at i:21980736 original size:22 final size:23
Alignment explanation
Indices: 21980708--21980757 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
21980698 AATTCATATA
* *
21980708 AATTTAATTATTATATTATT-TT
1 AATTTAATAATTATAATATTATT
*
21980730 AATTTAATAATTTTAATATTATT
1 AATTTAATAATTATAATATTATT
21980753 AATTT
1 AATTT
21980758 TGTTAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
AATTTAATAATTATAATATTATT
Found at i:21980744 original size:14 final size:15
Alignment explanation
Indices: 21980705--21980758 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
21980695 GTTAATTCAT
*
21980705 ATAAATTTAATTATTA
1 ATAATTTTAA-TATTA
*
21980721 TATTATTTTAAT-TTA
1 -ATAATTTTAATATTA
21980736 ATAATTTTAATATTA
1 ATAATTTTAATATTA
*
21980751 TTAATTTT
1 ATAATTTT
21980759 GTTAATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 10 0.31
15 13 0.41
16 1 0.03
17 8 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATAATTTTAATATTA
Found at i:21980810 original size:19 final size:20
Alignment explanation
Indices: 21980772--21980810 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
21980762 AATTTTTTAT
*
21980772 CATTGATTTTATTGACATAA
1 CATTGATTTTATTAACATAA
*
21980792 CATTGA-TTTATTAATATAA
1 CATTGATTTTATTAACATAA
21980811 TAATTAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (20 bp):
CATTGATTTTATTAACATAA
Found at i:21981933 original size:18 final size:18
Alignment explanation
Indices: 21981896--21981994 Score: 53
Period size: 18 Copynumber: 5.4 Consensus size: 18
21981886 TCTTACGATT
*
21981896 TAAAATATAATA-AGATAA
1 TAAAATATAATATAAAT-A
*
21981914 TATAATATAAATATAAAATA
1 TAAAATAT-AATAT-AAATA
* *
21981934 TAAAA-ATAATAT-GATT
1 TAAAATATAATATAAATA
*
21981950 TAAAATTTTAATAATAAATA
1 TAAAA-TATAAT-ATAAATA
*
21981970 TATAAATTTAATA-AAATA
1 TA-AAATATAATATAAATA
*
21981988 AAAAATA
1 TAAAATA
21981995 ATTTTTATAT
Statistics
Matches: 63, Mismatches: 10, Indels: 17
0.70 0.11 0.19
Matches are distributed among these distances:
16 7 0.11
17 4 0.06
18 22 0.35
19 9 0.14
20 15 0.24
21 6 0.10
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
TAAAATATAATATAAATA
Found at i:21982024 original size:23 final size:25
Alignment explanation
Indices: 21981985--21982046 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
21981975 ATTTAATAAA
* *
21981985 ATAAAAAATAATTTTTATATTTTTAT
1 ATAAAATATAATTTATA-ATTTTTAT
*
21982011 AT-TAATATAATTTATAATTTTTAT
1 ATAAAATATAATTTATAATTTTTAT
21982035 ATAAAATATAAT
1 ATAAAATATAAT
21982047 ATAAATATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 10 0.32
25 19 0.61
26 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
ATAAAATATAATTTATAATTTTTAT
Found at i:21983679 original size:34 final size:33
Alignment explanation
Indices: 21983620--21983685 Score: 96
Period size: 34 Copynumber: 2.0 Consensus size: 33
21983610 GCACCCCATA
**
21983620 TTTAAAACTTTTTGAAAATTCATTTTTCAAAAC
1 TTTAAAACTTTTTGAAAATGAATTTTTCAAAAC
*
21983653 TTTAAAAGCTTTTTGAAAATGAATTTTTGAAAA
1 TTTAAAA-CTTTTTGAAAATGAATTTTTCAAAA
21983686 ATTTTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 7 0.24
34 22 0.76
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (33 bp):
TTTAAAACTTTTTGAAAATGAATTTTTCAAAAC
Found at i:21984938 original size:2 final size:2
Alignment explanation
Indices: 21984931--21984966 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
21984921 AGATAAGATG
21984931 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
21984967 AAATATATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:21985021 original size:12 final size:13
Alignment explanation
Indices: 21984969--21985034 Score: 53
Period size: 14 Copynumber: 4.9 Consensus size: 13
21984959 CTCTCTCTAA
21984969 ATATATATATATT
1 ATATATATATATT
* * *
21984982 TTATATCATTTACCT
1 ATATAT-ATATA-TT
* *
21984997 ATATCTGTATATT
1 ATATATATATATT
21985010 AT-TATATATATT
1 ATATATATATATT
21985022 ATATTATATATAT
1 ATA-TATATATAT
21985035 AATAAAAATG
Statistics
Matches: 39, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
12 10 0.26
13 8 0.21
14 16 0.41
15 5 0.13
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.55
Consensus pattern (13 bp):
ATATATATATATT
Found at i:21985190 original size:79 final size:80
Alignment explanation
Indices: 21985057--21985220 Score: 260
Period size: 79 Copynumber: 2.1 Consensus size: 80
21985047 AACTCTAAAA
* * * *
21985057 ATATTAAAAATAATTAATCAAAATATTTTTATAAATTTTTAAATTAATAAATTTATCTTTAGATT
1 ATATTAAAAATAATCAATCAAAATACTCTTATAAATTTTTAAATTAATAAATTTATCTTTAAATT
21985122 ATAATTTTTATTAAT
66 ATAATTTTTATTAAT
*
21985137 TTATTAAAAA-AATCAA-CTAAAATACTCTTATAAATTTTTAAATTAATAAATTTATCTTTAAAT
1 ATATTAAAAATAATCAATC-AAAATACTCTTATAAATTTTTAAATTAATAAATTTATCTTTAAAT
21985200 TATAATTTTTATTAAT
65 TATAATTTTTATTAAT
21985216 ATATT
1 ATATT
21985221 TAAGTTTAAT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
78 1 0.01
79 67 0.87
80 9 0.12
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (80 bp):
ATATTAAAAATAATCAATCAAAATACTCTTATAAATTTTTAAATTAATAAATTTATCTTTAAATT
ATAATTTTTATTAAT
Found at i:21985229 original size:32 final size:34
Alignment explanation
Indices: 21985164--21985236 Score: 82
Period size: 32 Copynumber: 2.2 Consensus size: 34
21985154 TAAAATACTC
*
21985164 TTATAAATTTTTAAATTAATAAATTTATCTTTAAA
1 TTATAAATTTTT-AATTAATAAATTTAACTTTAAA
* *
21985199 TTAT-AATTTTT-ATTAATATATTTAAGTTT-AA
1 TTATAAATTTTTAATTAATAAATTTAACTTTAAA
21985230 TT-TAAAT
1 TTATAAAT
21985237 CAACTAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
30 1 0.03
31 7 0.21
32 15 0.44
34 7 0.21
35 4 0.12
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (34 bp):
TTATAAATTTTTAATTAATAAATTTAACTTTAAA
Found at i:21990202 original size:18 final size:17
Alignment explanation
Indices: 21990175--21990214 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
21990165 TTTTTGTAAA
21990175 TATTTTTAATAAAAAAT
1 TATTTTTAATAAAAAAT
21990192 TATTATTTAATAAAAAAT
1 TATT-TTTAATAAAAAAT
*
21990210 AATTT
1 TATTT
21990215 AATTATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTTTTAATAAAAAAT
Found at i:21994975 original size:28 final size:30
Alignment explanation
Indices: 21994898--21994985 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 30
21994888 TATATTTATA
*
21994898 TTATATTTTATATAAAAATTATATATTATAAT
1 TTATA-TTTATATAAAAA-TATATAATATAAT
*
21994930 TTATATTTATATAAAAATATATAATATATT
1 TTATATTTATATAAAAATATATAATATAAT
* *
21994960 TTTTATTT-TATTAAATATATATAATA
1 TTATATTTATA-TAAAAATATATAATA
21994986 ATTATTAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.04
30 32 0.63
31 12 0.24
32 5 0.10
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (30 bp):
TTATATTTATATAAAAATATATAATATAAT
Found at i:21995508 original size:14 final size:14
Alignment explanation
Indices: 21995475--21995508 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
21995465 TTTACTTTAA
*
21995475 TATTTAAATATTTT
1 TATTTAAATAATTT
21995489 TA-TTAAATAATTT
1 TATTTAAATAATTT
21995502 TATTTAA
1 TATTTAA
21995509 TTTGTTTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTTAAATAATTT
Found at i:21995658 original size:28 final size:27
Alignment explanation
Indices: 21995618--21995673 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
21995608 AATTATTTTT
* *
21995618 TAAAATTAAAAAAT-TCAGTTCAATTAA
1 TAAAAATAAAAAATAT-AATTCAATTAA
21995645 TAAAAATAATAAAATATAATTCAATTAA
1 TAAAAATAA-AAAATATAATTCAATTAA
21995673 T
1 T
21995674 TTAATTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.32
28 16 0.64
29 1 0.04
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (27 bp):
TAAAAATAAAAAATATAATTCAATTAA
Found at i:22000206 original size:16 final size:16
Alignment explanation
Indices: 22000166--22000225 Score: 52
Period size: 16 Copynumber: 3.9 Consensus size: 16
22000156 TTTAATTATT
* *
22000166 TATTTATATATTTATA
1 TATTTATATTTTTAAA
* *
22000182 TAATGATATTTTTAAA
1 TATTTATATTTTTAAA
*
22000198 TATTTATA-TTTAAAA
1 TATTTATATTTTTAAA
*
22000213 TA-TAATATTTTTA
1 TATTTATATTTTTA
22000226 TTAATTTCGG
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
14 4 0.12
15 12 0.35
16 18 0.53
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TATTTATATTTTTAAA
Found at i:22000778 original size:18 final size:16
Alignment explanation
Indices: 22000742--22000875 Score: 56
Period size: 15 Copynumber: 8.8 Consensus size: 16
22000732 TAATTATAAA
*
22000742 TAATATTATAATA-TAT
1 TAATATAAT-ATACTAT
22000758 TAATGAATAATATACTAT
1 TAAT--ATAATATACTAT
* *
22000776 TAATATAATATATTAA
1 TAATATAATATACTAT
*
22000792 TACT-TAATATA--A-
1 TAATATAATATACTAT
* *
22000804 TAATA-ATTATTC-ATT
1 TAATATAATATACTA-T
*
22000819 TAAT-TAATA-AATAT
1 TAATATAATATACTAT
* *
22000833 T-ATAATAATATATTAA
1 TAAT-ATAATATACTAT
*
22000849 TAA-ATAATATACTAC
1 TAATATAATATACTAT
22000864 TAATATAATATA
1 TAATATAATATA
22000876 TTAATAAATA
Statistics
Matches: 90, Mismatches: 14, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
12 7 0.08
13 4 0.04
14 2 0.02
15 33 0.37
16 29 0.32
17 4 0.04
18 11 0.12
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (16 bp):
TAATATAATATACTAT
Found at i:22000784 original size:31 final size:31
Alignment explanation
Indices: 22000740--22000926 Score: 170
Period size: 31 Copynumber: 6.0 Consensus size: 31
22000730 TTTAATTATA
* *
22000740 AATAATATTATAATATATTAATGAATAATAT
1 AATAATAATATAATATATTAATAAATAATAT
* * **
22000771 ACTATTAATATAATATATTAATACTTAATAT
1 AATAATAATATAATATATTAATAAATAATAT
* *
22000802 AATAATAAT-TATTCAT-TTAATTAATAA-AT
1 AATAATAATATAAT-ATATTAATAAATAATAT
*
22000831 -ATTAT-A-ATAATATATTAATAAATAATAT
1 AATAATAATATAATATATTAATAAATAATAT
* *
22000859 ACTACTAATATAATATATTAATAAATATTATTAAT
1 AATAATAATATAATATATTAATAAATA--A-T-AT
*
22000894 AAATAATATTATAATATATTAATAAATAATAT
1 -AATAATAATATAATATATTAATAAATAATAT
22000926 A
1 A
22000927 TTTTATTTTA
Statistics
Matches: 123, Mismatches: 21, Indels: 24
0.73 0.12 0.14
Matches are distributed among these distances:
26 2 0.02
27 14 0.11
28 6 0.05
29 4 0.03
30 12 0.10
31 53 0.43
32 2 0.02
33 2 0.02
34 2 0.02
35 2 0.02
36 24 0.20
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.43
Consensus pattern (31 bp):
AATAATAATATAATATATTAATAAATAATAT
Found at i:22000940 original size:23 final size:23
Alignment explanation
Indices: 22000764--22000894 Score: 59
Period size: 23 Copynumber: 5.3 Consensus size: 23
22000754 ATATTAATGA
* *
22000764 ATAATATACTATTAATATAATA-T
1 ATAATATATTAATAA-ATAATATT
*
22000787 ATTAATA-CTTAATATAATAATAATT
1 A-TAATATATTAATA-AATAAT-ATT
* * * *
22000812 ATTCATTTAATTAATAAATATTATA
1 A-TAATAT-ATTAATAAATAATATT
22000837 ATAATATATTAATAAATAATATACT
1 ATAATATATTAATAAATAATAT--T
* *
22000862 ACTAATATAATATATTAATAAATATT
1 A-TAATATATTA-ATAAAT-AATATT
22000888 ATTAATA
1 A-TAATA
22000895 AATAATATTA
Statistics
Matches: 82, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
23 24 0.29
24 11 0.13
25 10 0.12
26 21 0.26
27 11 0.13
28 5 0.06
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAATATATTAATAAATAATATT
Found at i:22000985 original size:14 final size:15
Alignment explanation
Indices: 22000966--22000998 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22000956 AATATTAAAA
*
22000966 TATT-AAAATATTAT
1 TATTAAAAATATAAT
22000980 TATTAAAAATATAAT
1 TATTAAAAATATAAT
22000995 TATT
1 TATT
22000999 TTTAATATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TATTAAAAATATAAT
Found at i:22001201 original size:13 final size:14
Alignment explanation
Indices: 22001168--22001200 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
22001158 AAATATAAAT
22001168 ATTTTTCAAAATTC
1 ATTTTTCAAAATTC
22001182 ATTTTTCAAAATTC
1 ATTTTTCAAAATTC
22001196 ATTTT
1 ATTTT
22001201 CTGGGAGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTTTCAAAATTC
Found at i:22001722 original size:12 final size:12
Alignment explanation
Indices: 22001705--22001734 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22001695 CAAGATAACA
*
22001705 ATAATCCTCTTT
1 ATAATCCTCTTC
22001717 ATAATCCTCTTC
1 ATAATCCTCTTC
22001729 ATAATC
1 ATAATC
22001735 TTATTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (12 bp):
ATAATCCTCTTC
Found at i:22021798 original size:13 final size:13
Alignment explanation
Indices: 22021782--22021806 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22021772 TATGAATATG
22021782 ATATAAAAATAAA
1 ATATAAAAATAAA
22021795 ATATAAAAATAA
1 ATATAAAAATAA
22021807 TATAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
ATATAAAAATAAA
Found at i:22023249 original size:2 final size:2
Alignment explanation
Indices: 22023232--22023294 Score: 72
Period size: 2 Copynumber: 30.5 Consensus size: 2
22023222 TACGGATTGC
* * *
22023232 TA TA AA TA TGA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA CA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
22023275 TA CA TA TGA TA TA TA TA TA T
1 TA TA TA T-A TA TA TA TA TA T
22023295 CAATATGATT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
2 47 0.92
3 4 0.08
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (2 bp):
TA
Found at i:22026843 original size:7 final size:7
Alignment explanation
Indices: 22026829--22026860 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
22026819 AACGATGTGC
22026829 TGTGGCT
1 TGTGGCT
*
22026836 TTTGGCT
1 TGTGGCT
22026843 TGTGGCT
1 TGTGGCT
22026850 TGTGGCT
1 TGTGGCT
22026857 TGTG
1 TGTG
22026861 ACGCTGCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.12, G:0.41, T:0.47
Consensus pattern (7 bp):
TGTGGCT
Found at i:22035922 original size:2 final size:2
Alignment explanation
Indices: 22035915--22035941 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22035905 AAGCTCTGTA
22035915 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
22035942 GTTGTAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22037801 original size:16 final size:16
Alignment explanation
Indices: 22037764--22037797 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22037754 TATGTGTATA
*
22037764 TGTATATTGCTATTCT
1 TGTATCTTGCTATTCT
22037780 TGTATCTTGCTATT-T
1 TGTATCTTGCTATTCT
22037795 TGT
1 TGT
22037798 TATCCATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.59
Consensus pattern (16 bp):
TGTATCTTGCTATTCT
Found at i:22039299 original size:21 final size:22
Alignment explanation
Indices: 22039270--22039311 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
22039260 GTCATATACA
*
22039270 AAATATATAT-TTATTTTTATC
1 AAATATATATATAATTTTTATC
*
22039291 AAATTTATATATAATTTTTAT
1 AAATATATATATAATTTTTAT
22039312 TAAAATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
AAATATATATATAATTTTTATC
Found at i:22039317 original size:23 final size:21
Alignment explanation
Indices: 22039269--22039319 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
22039259 TGTCATATAC
* *
22039269 AAAATATATATTTATTTTTAT
1 AAAATTTATATTAATTTTTAT
*
22039290 CAAATTTATATATAATTTTTATT
1 AAAATTTATAT-TAATTTTTA-T
22039313 AAAATTT
1 AAAATTT
22039320 TAAATTATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 9 0.38
22 8 0.33
23 7 0.29
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
AAAATTTATATTAATTTTTAT
Found at i:22042872 original size:12 final size:12
Alignment explanation
Indices: 22042855--22042881 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22042845 ATCAGCCTTT
22042855 AAGTGAAGAAGA
1 AAGTGAAGAAGA
22042867 AAGTGAAGAAGA
1 AAGTGAAGAAGA
22042879 AAG
1 AAG
22042882 CCTTCAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.33, T:0.07
Consensus pattern (12 bp):
AAGTGAAGAAGA
Found at i:22043588 original size:17 final size:19
Alignment explanation
Indices: 22043556--22043597 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
22043546 TTATTTAATT
22043556 TTATATTTATATTTAAAAA
1 TTATATTTATATTTAAAAA
22043575 TTAT-TTTATA-TTAAAAA
1 TTATATTTATATTTAAAAA
*
22043592 TAATAT
1 TTATAT
22043598 GAAATAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 10 0.48
18 7 0.33
19 4 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TTATATTTATATTTAAAAA
Found at i:22044929 original size:20 final size:20
Alignment explanation
Indices: 22044873--22044940 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
22044863 TTATTTTTAA
22044873 TATAAATATAAAATTAAAT-AT
1 TATAAA-ATAAAA-TAAATAAT
*
22044894 ATATAAAA-ATATATAAATAAT
1 -TATAAAATA-AAATAAATAAT
22044915 TATAAAATAAAATAAATAAT
1 TATAAAATAAAATAAATAAT
22044935 TA-AAAA
1 TATAAAA
22044941 AATTATTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
19 4 0.10
20 25 0.61
21 6 0.15
22 6 0.15
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
TATAAAATAAAATAAATAAT
Found at i:22050994 original size:12 final size:12
Alignment explanation
Indices: 22050979--22051003 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22050969 AAATTTTAAA
22050979 TCAAATTCAAAT
1 TCAAATTCAAAT
22050991 TCAAATTCAAAT
1 TCAAATTCAAAT
22051003 T
1 T
22051004 TTTTACTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (12 bp):
TCAAATTCAAAT
Found at i:22051470 original size:11 final size:11
Alignment explanation
Indices: 22051452--22051494 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
22051442 TAAATTCTAA
22051452 TATTTATAATT
1 TATTTATAATT
*
22051463 TTTTTATAA-T
1 TATTTATAATT
22051473 TATTTATAA--
1 TATTTATAATT
22051482 TATTTATAATT
1 TATTTATAATT
22051493 TA
1 TA
22051495 AATTTGTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 9 0.32
10 9 0.32
11 10 0.36
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TATTTATAATT
Found at i:22051487 original size:9 final size:9
Alignment explanation
Indices: 22051449--22051515 Score: 59
Period size: 9 Copynumber: 7.3 Consensus size: 9
22051439 ATTTAAATTC
22051449 TAATATTTA
1 TAATATTTA
*
22051458 TAATTTTTTTA
1 TAA--TATTTA
22051469 TAATTATTTA
1 TAA-TATTTA
22051479 TAATATTTA
1 TAATATTTA
22051488 T-A-ATTTA
1 TAATATTTA
*
22051495 -AATTTGTTA
1 TAATAT-TTA
22051504 TAATATTTA
1 TAATATTTA
22051513 TAA
1 TAA
22051516 CAAAAATCAG
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
7 6 0.12
8 2 0.04
9 19 0.40
10 13 0.27
11 8 0.17
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (9 bp):
TAATATTTA
Found at i:22056458 original size:13 final size:13
Alignment explanation
Indices: 22056442--22056466 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22056432 TTGTCAAGCT
22056442 TTTAATTTTTTAA
1 TTTAATTTTTTAA
22056455 TTTAATTTTTTA
1 TTTAATTTTTTA
22056467 TCTTATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTAATTTTTTAA
Found at i:22059511 original size:12 final size:12
Alignment explanation
Indices: 22059477--22059528 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
22059467 ATAACATCAT
22059477 TATAATTATTTA
1 TATAATTATTTA
*
22059489 -ATAAATCATTTA
1 TAT-AATTATTTA
22059501 TATAATTATTTA
1 TATAATTATTTA
22059513 -ATAA--ATTTA
1 TATAATTATTTA
22059522 T-TAATTA
1 TATAATTA
22059529 ATAAAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
9 8 0.24
11 7 0.21
12 16 0.48
13 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (12 bp):
TATAATTATTTA
Found at i:22061577 original size:26 final size:29
Alignment explanation
Indices: 22061525--22061578 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 29
22061515 AGTTTACCTA
**
22061525 TTAATAAATATATTTATTAATTTAATAAT
1 TTAATAAATATATTTATTAATAGAATAAT
22061554 TTAAT-AATAT-TTTATT-ATAGAATAA
1 TTAATAAATATATTTATTAATAGAATAA
22061579 ATAAAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 7 0.30
27 6 0.26
28 5 0.22
29 5 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (29 bp):
TTAATAAATATATTTATTAATAGAATAAT
Found at i:22064336 original size:13 final size:13
Alignment explanation
Indices: 22064318--22064356 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
22064308 ATAAATGATT
22064318 AAATAAAAATTAA
1 AAATAAAAATTAA
22064331 AAATAAAAA-TAA
1 AAATAAAAATTAA
22064343 AAATTAATAAATTA
1 AAA-TAA-AAATTA
22064357 TTGGTCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.26
13 12 0.52
14 3 0.13
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAATAAAAATTAA
Found at i:22071980 original size:12 final size:12
Alignment explanation
Indices: 22071940--22071981 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
22071930 AGACACACCC
22071940 TTCAGTAAACCA
1 TTCAGTAAACCA
*
22071952 TTCA-AAAACATCA
1 TTCAGTAAAC--CA
22071965 TTCAGTAAACCA
1 TTCAGTAAACCA
22071977 TTCAG
1 TTCAG
22071982 CATACGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 4 0.16
12 11 0.44
13 6 0.24
14 4 0.16
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (12 bp):
TTCAGTAAACCA
Found at i:22071995 original size:12 final size:12
Alignment explanation
Indices: 22071976--22072022 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
22071966 TCAGTAAACC
22071976 ATTCAGCATACG
1 ATTCAGCATACG
*
22071988 ATTTAGCATACG
1 ATTCAGCATACG
*
22072000 ATTCAGCACA-G
1 ATTCAGCATACG
22072011 AATTCAGCATAC
1 -ATTCAGCATAC
22072023 CAATATCATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 1 0.03
12 28 0.97
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (12 bp):
ATTCAGCATACG
Found at i:22073214 original size:187 final size:187
Alignment explanation
Indices: 22072854--22074198 Score: 1147
Period size: 187 Copynumber: 7.2 Consensus size: 187
22072844 ACTTTAACAT
* * * * * *
22072854 TATTGAAAGTATTTTAT-ACTAAAAAACGTCTTTAATAATCTCAAGT-TTTTTTTAAAAAAATTA
1 TATTGAAGGTATTTT-TCACTAGAAAATGCCTTTAATAATCTCAAATAATTTTTTAAAAAAATTA
* * * * * * * *
22072917 TTGAAAGCGTTTATTCTCAAAAAACACCTTCAATAATTATGTAAAAAAATTAAAACAAATTAGTG
65 TTGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAGAAATTA-TT
* * * * * *
22072982 AATGAGTTTTTTTTTA-AATAAACGCATTCACTAATCGTATTAAAATTAGAGTAGTGAAA
129 AAAG-GTATTTTTTTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAGTGAAA
* * * * *
22073041 TATTGAAGGTGTTTTTCACTAGAAAATACATTTAATAATCCCAAATATTTTTTTAAAAAAATTAT
1 TATTGAAGGTATTTTTCACTAGAAAATGCCTTTAATAATCTCAAATAATTTTTTAAAAAAATTAT
* * ** **
22073106 TGAAGGCATTTGTTTTTCAAAAACGCCTTCAATAATTATGTACAAAATTTAAAAGAAATTATTAA
66 TGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAGAAATTATTAA
* * * **
22073171 AGGTATTTTTATGGAATAAACGCCTTCACTAACCGTCTTAAAATTTAAGT-GCTGGTA
131 AGGTATTTTTTTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAG-TGAAA
** * * * *
22073228 TATTGAAGGCGTTTTTCACTAGAATACGTCTTTAATAATC-CTAAA-AATTTTTAAAAGAAAATT
1 TATTGAAGGTATTTTTCACTAGAAAATGCCTTTAATAATCTC-AAATAATTTTTTAAA-AAAATT
* * * * * * *
22073291 ATTAAAGGCGTTTGTTCTAAAAAAACACCTTTAATAATTATGTACATAAA-TTAAATGGAATCAG
64 ATTGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACA-AAATTTAAAAGAAATTAT
* * * * * *
22073355 TGAAGATATTTTTCTAGAATAAAAGCCTTCATTAACCGTCTTAAAATTTTAGTAGT-AGAA
128 TAAAGGTATTTTTTTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAGTGA-AA
** * * *
22073415 TATTGAAGACATTTTTCA-TTGAAAGATGCCTTCAATAATCTCAAAT-ATTTTTAAAAGAAAATT
1 TATTGAAGGTATTTTTCACTAGAAA-ATGCCTTTAATAATCTCAAATAATTTTTTAAA-AAAATT
* * *
22073478 ATTGAATGCGTTTATTCTAAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGAAATTATT
64 ATTGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAGAAATTATT
* * * * * * ***
22073543 GAAGGCATTTTTTTAGAATAAACGCCTTAACTAATCGTCTTAAAATTTAAGTACTGGTG
129 AAAGGTATTTTTTTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAGTGAAA
* * * * * * *
22073602 TATTGAATGTATTTTTGACTAGAAGACGCCTTTAATAAT-TGAAA-AAATTTTAAAAAAAATTAT
1 TATTGAAGGTATTTTTCACTAGAAAATGCCTTTAATAATCTCAAATAATTTTTTAAAAAAATTAT
* * * * * *
22073665 TGAAGGCGTTTGTTCTCAAAAAATACCTTTAATAATGATGTATATAAA--TAAAATAGAATCAGT
66 TGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACA-AAATTTAAAAGA-AATTA-T
* * * * * * *
22073728 T-AAGGTAATTTTTTAGAATAAATGACTTCACTAACTGTTTTAAAATTTGAATAGTGGAA
128 TAAAGGTATTTTTTTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAGTGAAA
* * * * *
22073787 TATTAATAGCGTGTTTTTCACTA-AAAATGCCTTCAATAATCTTAAATATTTTTTTAAAAAAATT
1 TATTGA-AG-GTATTTTTCACTAGAAAATGCCTTTAATAATCTCAAATAATTTTTTAAAAAAATT
* ** * * * *
22073851 GTTGAAGGTATTTGTTCTAAAAAAATGCTTTTAATAATTATGTACAAAATTTAAAAGGAATTATT
64 ATTGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAGAAATTATT
* * * * * * * *
22073916 AAAGGTATTTTTTTGGAATAAACGCATCCATTGACTGTTTTAAAATTTGATTGCAG-G-AA
129 AAAGGTATTTTTTTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGA--GTAGTGAAA
* * * *
22073975 TATTGAAGAT-TTTTTCACTAG-AAACGCTTTTAATAAT-TCAAA-AAATTTTTAAAATGAAATT
1 TATTGAAGGTATTTTTCACTAGAAAATGCCTTTAATAATCTCAAATAATTTTTTAAAA--AAATT
* * * * * * *
22074036 ATTGAAGGCGATTGCTCTAAAAAAATACCTTCAATAATTATGTAC-ATATATTAAATGGAATCAA
64 ATTGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAAT-TTAAAAGAAATTAT
* *
22074100 TGAAGGCATTTTTCTTA-AATAAACGCCTTCACTAACCGT-TTAAAAAATTTGAGTAGTGAAA
128 TAAAGGTATTTTT-TTAGAATAAACGCCTTCACTAACCGTCTT--AAAATTTGAGTAGTGAAA
* * * *
22074161 TATTGAACGCATTTTGCACTAGAAAATGCCTTCAATAA
1 TATTGAAGGTATTTTTCACTAGAAAATGCCTTTAATAA
22074199 ATTCTTTCAA
Statistics
Matches: 931, Mismatches: 188, Indels: 77
0.78 0.16 0.06
Matches are distributed among these distances:
183 10 0.01
184 18 0.02
185 204 0.22
186 81 0.09
187 416 0.45
188 194 0.21
189 6 0.01
190 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (187 bp):
TATTGAAGGTATTTTTCACTAGAAAATGCCTTTAATAATCTCAAATAATTTTTTAAAAAAATTAT
TGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAATTTAAAAGAAATTATTAA
AGGTATTTTTTTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAGTGAAA
Found at i:22073432 original size:374 final size:369
Alignment explanation
Indices: 22072877--22074198 Score: 1444
Period size: 374 Copynumber: 3.5 Consensus size: 369
22072867 TTATACTAAA
*** * * *
22072877 AAACGTCTTTAATAATCTCAAGTTTTTTTTAAAAAAATTATTGAAA-GCGTTTATTCTCAAAAAA
1 AAACGTCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATT-AAAGGCGTTTGTTCTAAAAAAA
* * *** * * *
22072941 CACCTTCAATAATTATGTAAAAAAATTAAAACAAATTAGTGAATGAGTTTTTTTTTAAATAAACG
65 CACCTTCAATAATTATGTACATAAATTAAATGGAATCAGTGAA-GA-TATTTTTCTAAATAAACG
* * * *** * *
22073006 CATTCACTAATCGTATTAAAATTAGAGTAGTGAAATATTGAAGGTGTTTTTCACTAGAAAATACA
128 CCTTCACTAACCGT-TTAAAATTTGAGTAGTGAAATATTGAAGACATTTTTCACTAGAAAATGCC
* * * ** *
22073071 TTTAATAATCCCAAATATTTTTTTAAAAAAATTATTGAAGGCATTTGTTTTTCAAAAACGCCTTC
192 TTCAATAATCTCAAATATTTTTTTAAAAAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTC
*
22073136 AATAATTATGTACAAAATTTAAAAGAAATTATTAAAGGTATTTTTATGGAATAAACGCCTTCACT
257 AATAATTATGTACAAAATTTAAAAGAAATTATTAAAGGTATTTTTTTGGAATAAACGCCTTCACT
**
22073201 AACCGTCTTAAAATTTAAGTGCTGGTATATTGAAGGCGTTTTTCACTAG
322 AACCGTCTTAAAATTTAAGTGCTGGTATATTGAA-GAATTTTTCACTAG
22073250 AATACGTCTTTAATAATC-CTAAAAATTTTTAAAAGAAAATTATTAAAGGCGTTTGTTCTAAAAA
1 AA-ACGTCTTTAATAATCTC-AAAAATTTTTAAAA-AAAATTATTAAAGGCGTTTGTTCTAAAAA
* *
22073314 AACACCTTTAATAATTATGTACATAAATTAAATGGAATCAGTGAAGATATTTTTCTAGAATAAAA
63 AACACCTTCAATAATTATGTACATAAATTAAATGGAATCAGTGAAGATATTTTTCTA-AATAAAC
* * *
22073379 GCCTTCATTAACCGTCTTAAAATTTTAGTAGT-AGAATATTGAAGACATTTTTCA-TTGAAAGAT
127 GCCTTCACTAACCGT-TTAAAATTTGAGTAGTGA-AATATTGAAGACATTTTTCACTAGAAA-AT
* * * *
22073442 GCCTTCAATAATCTCAAATA-TTTTTAAAAGAAAATTATTGAATGCGTTTATTCTAAAAAAATGC
189 GCCTTCAATAATCTCAAATATTTTTTTAAA-AAAATTATTGAAGGCATTTGTTCTAAAAAAATGC
* * *
22073506 CTTCAATAATTATGTACAAAATTTAAAAGAAATTATTGAAGGCATTTTTTTAGAATAAACGCCTT
253 CTTCAATAATTATGTACAAAATTTAAAAGAAATTATTAAAGGTATTTTTTTGGAATAAACGCCTT
* * * * * *
22073571 AACTAATCGTCTTAAAATTTAAGTACTGGTGTATTGAATGTATTTTTGACTAG
318 CACTAACCGTCTTAAAATTTAAGTGCTGGTATATTGAA-GAATTTTTCACTAG
* * * * *
22073624 AAGACGCCTTTAATAAT-TGAAAAAATTTTAAAAAAAATTATTGAAGGCGTTTGTTCTCAAAAAA
1 AA-ACGTCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTAAAGGCGTTTGTTCTAAAAAAA
* * * * * * * * *
22073688 TACCTTTAATAATGATGTATATAAATAAAATAGAATCAGTTAAGGTAATTTTT-TAGAATAAATG
65 CACCTTCAATAATTATGTACATAAATTAAATGGAATCAGTGAAGAT-ATTTTTCTA-AATAAACG
* * * * * *
22073752 ACTTCACTAACTGTTTTAAAATTTGAATAGTGGAATATT-AATAGCGTGTTTTTCACTA-AAAAT
128 CCTTCACTAACCG-TTTAAAATTTGAGTAGTGAAATATTGAAGA-C--ATTTTTCACTAGAAAAT
* * * *
22073815 GCCTTCAATAATCTTAAATATTTTTTTAAAAAAATTGTTGAAGGTATTTGTTCTAAAAAAATGCT
189 GCCTTCAATAATCTCAAATATTTTTTTAAAAAAATTATTGAAGGCATTTGTTCTAAAAAAATGCC
* * * *
22073880 TTTAATAATTATGTACAAAATTTAAAAGGAATTATTAAAGGTATTTTTTTGGAATAAACGCATCC
254 TTCAATAATTATGTACAAAATTTAAAAGAAATTATTAAAGGTATTTTTTTGGAATAAACGCCTTC
* * * * * * * * *
22073945 ATTGACTGTTTTAAAATTTGATTGCAGGAATATTGAAGATTTTTTCACTAG
319 ACTAACCGTCTTAAAATTTAAGTGCTGGTATATTGAAGAATTTTTCACTAG
* * * *
22073996 AAACG-CTTTTAATAAT-TCAAAAAATTTTTAAAATGAAATTATTGAAGGCGATTGCTCTAAAAA
1 AAACGTC-TTTAATAATCTC-AAAAATTTTTAAAA-AAAATTATTAAAGGCGTTTGTTCTAAAAA
* * * **
22074059 AATACCTTCAATAATTATGTACATATATTAAATGGAATCAATGAAGGCATTTTTCTTAAATAAAC
63 AACACCTTCAATAATTATGTACATAAATTAAATGGAATCAGTGAAGATATTTTTC-TAAATAAAC
*
22074124 GCCTTCACTAACCGTTTAAAAAATTTGAGTAGTGAAATATTGAACG-CATTTTGCACTAGAAAAT
127 GCCTTCACTAACCGTTT--AAAATTTGAGTAGTGAAATATTGAA-GACATTTTTCACTAGAAAAT
22074188 GCCTTCAATAA
189 GCCTTCAATAA
22074199 ATTCTTTCAA
Statistics
Matches: 796, Mismatches: 126, Indels: 54
0.82 0.13 0.06
Matches are distributed among these distances:
370 1 0.00
371 16 0.02
372 153 0.19
373 276 0.35
374 286 0.36
375 64 0.08
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (369 bp):
AAACGTCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTAAAGGCGTTTGTTCTAAAAAAAC
ACCTTCAATAATTATGTACATAAATTAAATGGAATCAGTGAAGATATTTTTCTAAATAAACGCCT
TCACTAACCGTTTAAAATTTGAGTAGTGAAATATTGAAGACATTTTTCACTAGAAAATGCCTTCA
ATAATCTCAAATATTTTTTTAAAAAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATA
ATTATGTACAAAATTTAAAAGAAATTATTAAAGGTATTTTTTTGGAATAAACGCCTTCACTAACC
GTCTTAAAATTTAAGTGCTGGTATATTGAAGAATTTTTCACTAG
Found at i:22073570 original size:62 final size:63
Alignment explanation
Indices: 22073098--22073570 Score: 185
Period size: 62 Copynumber: 7.6 Consensus size: 63
22073088 TTTTTTTAAA
* ** *
22073098 AAAATTATTGAAGGCATTTGTTTTTCAA-AAACGCCTTCAATAATTATGTACAAAATTTAAAAG
1 AAAATTATTGAAGGCATTT-TTCTAGAATAAACGCCTTCAATAATTATCTACAAAATTTAAAAG
* * * * * *** * **
22073161 -AAATTATTAAAGGTATTTTTATGGAATAAACGCCTTCACTAACCGTCT-TAAAATTTAAGTG
1 AAAATTATTGAAGGCATTTTTCTAGAATAAACGCCTTCAATAATTATCTACAAAATTTAAAAG
**** * * * *
22073222 CTGGTATATTGAAGGCGTTTTTCACTAGAAT--ACGTCTTTAATAA-T-CCTA-AAAATTTTTAA
1 AAAAT-TATTGAAGGCATTTTT--CTAGAATAAACGCCTTCAATAATTATCTACAAAA--TTTAA
22073282 AAG
61 AAG
* * * * * * *
22073285 AAAATTATTAAAGGCGTTTGTTCTA-AAAAAACACCTTTAATAATTATGTACATAAA-TTAAATG
1 AAAATTATTGAAGGCATTT-TTCTAGAATAAACGCCTTCAATAATTATCTACA-AAATTTAAAAG
* * * ** * * *** * **
22073348 -GAATCAGTGAAGATATTTTTCTAGAATAAAAGCCTTCATTAACCGTCTTA-AAATTTTAGTAG
1 AAAATTATTGAAGGCATTTTTCTAGAATAAACGCCTTCAATAATTATC-TACAAAATTTAAAAG
* * * * *
22073410 TAGAA-TATTGAAGACATTTTTCATTGAA-AGATGCCTTCAAT-A--ATCT-CAAATATTTTTAA
1 -AAAATTATTGAAGGCATTTTTC-TAGAATAAACGCCTTCAATAATTATCTACAAA-A--TTTAA
22073469 AAG
61 AAG
* * * * *
22073472 AAAATTATTGAATGCGTTTATTCTA-AAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAG
1 AAAATTATTGAAGGCATTT-TTCTAGAATAAACGCCTTCAATAATTATCTACAAAATTTAAAAG
*
22073535 -AAATTATTGAAGGCATTTTTTTAGAATAAACGCCTT
1 AAAATTATTGAAGGCATTTTTCTAGAATAAACGCCTT
22073571 AACTAATCGT
Statistics
Matches: 295, Mismatches: 82, Indels: 67
0.66 0.18 0.15
Matches are distributed among these distances:
59 4 0.01
60 4 0.01
61 40 0.14
62 144 0.49
63 77 0.26
64 9 0.03
65 10 0.03
66 7 0.02
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (63 bp):
AAAATTATTGAAGGCATTTTTCTAGAATAAACGCCTTCAATAATTATCTACAAAATTTAAAAG
Found at i:22073928 original size:373 final size:368
Alignment explanation
Indices: 22072902--22074198 Score: 1441
Period size: 373 Copynumber: 3.5 Consensus size: 368
22072892 TCTCAAGTTT
* * * * * *
22072902 TTTTTAAA-AAAATTATTGAAAGCGTTTATTCTCAAAAAACACCTTCAATAATTATGTAAAAAAA
1 TTTTAAAAGAAAATTATTGAAGGCGTTTGTTCTAAAAAAACACCTTCAATAATTATGTACATAAA
* * ** * * * *
22072966 TTAAAACA-AATTAGTGAATGAGTTTTTTTTTAAATAAACGCATTCACTAATCGTATTAAAATTA
66 -TAAAATAGAATCAGTGAA-G-GTAATTTTTTAAATAAACGCCTTCACTAACCGTTTTAAAATTT
* * * * *
22073030 GAGTAGTGAAATATTGAAG-GTGTTTTTCACTAGAAAATACATTTAATAATCCCAAATATTTTTT
128 GAGTAGTGAAATATTGAAGCGTATTTTTCACTAGAAAATGCCTTCAATAATCTCAAATATTTTTT
* ** *
22073094 TAAAAAAATTATTGAAGGCATTTGTTTTTCAAAAACGCCTTCAATAATTATGTACAAAATTTAAA
193 TAAAAAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACAAAATTTAAA
*
22073159 AGAAATTATTAAAGGTATTTTTATGGAATAAACGCCTTCACTAACCGTCTTAAAATTTAAGTGCT
258 AGAAATTATTAAAGGTATTTTTTTGGAATAAACGCCTTCACTAA-CGTCTTAAAATTTAAGTGCT
* * *
22073224 GGTATATTGAAGGCGTTTTTCACTAGAATACGTCTTTAATAATCCTAAAAAT
322 GGTATATTGAA-G-ATTTTTCACTAGAA-ACGCCTTTAATAAT--TAAAAAA
* *
22073276 TTTTAAAAGAAAATTATTAAAGGCGTTTGTTCTAAAAAAACACCTTTAATAATTATGTACATAAA
1 TTTTAAAAGAAAATTATTGAAGGCGTTTGTTCTAAAAAAACACCTTCAATAATTATGTACATAAA
* * * * * * *
22073341 TTAAATGGAATCAGTGAAGAT-ATTTTTCTAGAATAAAAGCCTTCATTAACCGTCTTAAAATTTT
66 TAAAATAGAATCAGTGAAGGTAATTTTT-TA-AATAAACGCCTTCACTAACCGTTTTAAAATTTG
*
22073405 AGTAGT-AGAATATTGAAGAC--ATTTTTCA-TTGAAAGATGCCTTCAATAATCTCAAATA-TTT
129 AGTAGTGA-AATATTGAAG-CGTATTTTTCACTAGAAA-ATGCCTTCAATAATCTCAAATATTTT
* * * *
22073465 TTAAAAGAAAATTATTGAATGCGTTTATTCTAAAAAAATGCCTTCAATAATTATGTACAAAATTT
191 TTTAAA-AAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACAAAATTT
* * * *
22073530 AAAAGAAATTATTGAAGGCATTTTTTTAGAATAAACGCCTTAACTAATCGTCTTAAAATTTAAGT
255 AAAAGAAATTATTAAAGGTATTTTTTTGGAATAAACGCCTTCACTAA-CGTCTTAAAATTTAAGT
* * *
22073595 ACTGGTGTATTGAATGTATTTTTGACTAGAAGACGCCTTTAATAATTGAAAAAA
319 GCTGGTATATTGAA-G-ATTTTTCACTAGAA-ACGCCTTTAATAATT-AAAAAA
* * * * *
22073649 TTTTAAAA-AAAATTATTGAAGGCGTTTGTTCTCAAAAAATACCTTTAATAATGATGTATATAAA
1 TTTTAAAAGAAAATTATTGAAGGCGTTTGTTCTAAAAAAACACCTTCAATAATTATGTACATAAA
* * * *
22073713 TAAAATAGAATCAGTTAAGGTAATTTTTTAGAATAAATGACTTCACTAACTGTTTTAAAATTTGA
66 TAAAATAGAATCAGTGAAGGTAATTTTTTA-AATAAACGCCTTCACTAACCGTTTTAAAATTTGA
* * * * *
22073778 ATAGTGGAATATTAATAGCGTGTTTTTCACTA-AAAATGCCTTCAATAATCTTAAATATTTTTTT
130 GTAGTGAAATATTGA-AGCGTATTTTTCACTAGAAAATGCCTTCAATAATCTCAAATATTTTTTT
* * * *
22073842 AAAAAAATTGTTGAAGGTATTTGTTCTAAAAAAATGCTTTTAATAATTATGTACAAAATTTAAAA
194 AAAAAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAA
* * * * * * * * *
22073907 GGAATTATTAAAGGTATTTTTTTGGAATAAACGCATCCATTGACTGTTTTAAAATTTGATTGCAG
259 GAAATTATTAAAGGTATTTTTTTGGAATAAACGCCTTCACTAAC-GTCTTAAAATTTAAGTGCTG
* *
22073972 GAATATTGAAGATTTTTTCACTAGAAACGCTTTTAATAATTCAAAAAA
323 GTATATTGAAGA-TTTTTCACTAGAAACGCCTTTAATAATT-AAAAAA
* * *
22074020 TTTTTAAAATG-AAATTATTGAAGGCGATTGCTCTAAAAAAATACCTTCAATAATTATGTACATA
1 -TTTTAAAA-GAAAATTATTGAAGGCGTTTGTTCTAAAAAAACACCTTCAATAATTATGTACATA
* * * * * * *
22074084 TATTAAATGGAATCAATGAAGGCATTTTTCTTAAATAAACGCCTTCACTAACCGTTTAAAAAATT
64 AATAAAATAGAATCAGTGAAGGTAATTTT-TTAAATAAACGCCTTCACTAACCGTTT-TAAAATT
* *
22074149 TGAGTAGTGAAATATTGAA-CGCATTTTGCACTAGAAAATGCCTTCAATAA
127 TGAGTAGTGAAATATTGAAGCGTATTTTTCACTAGAAAATGCCTTCAATAA
22074199 ATTCTTTCAA
Statistics
Matches: 777, Mismatches: 121, Indels: 51
0.82 0.13 0.05
Matches are distributed among these distances:
371 21 0.03
372 150 0.19
373 278 0.36
374 269 0.35
375 59 0.08
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (368 bp):
TTTTAAAAGAAAATTATTGAAGGCGTTTGTTCTAAAAAAACACCTTCAATAATTATGTACATAAA
TAAAATAGAATCAGTGAAGGTAATTTTTTAAATAAACGCCTTCACTAACCGTTTTAAAATTTGAG
TAGTGAAATATTGAAGCGTATTTTTCACTAGAAAATGCCTTCAATAATCTCAAATATTTTTTTAA
AAAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGA
AATTATTAAAGGTATTTTTTTGGAATAAACGCCTTCACTAACGTCTTAAAATTTAAGTGCTGGTA
TATTGAAGATTTTTCACTAGAAACGCCTTTAATAATTAAAAAA
Found at i:22079311 original size:15 final size:15
Alignment explanation
Indices: 22079291--22079324 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
22079281 TTAGTGTACT
22079291 GTCAGATCTAACTCA
1 GTCAGATCTAACTCA
22079306 GTCAGATCTAACTCA
1 GTCAGATCTAACTCA
22079321 GTCA
1 GTCA
22079325 CTTCTAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (15 bp):
GTCAGATCTAACTCA
Found at i:22079330 original size:15 final size:15
Alignment explanation
Indices: 22079291--22079332 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
22079281 TTAGTGTACT
*
22079291 GTCAGATCTAACTCA
1 GTCACATCTAACTCA
*
22079306 GTCAGATCTAACTCA
1 GTCACATCTAACTCA
*
22079321 GTCACTTCTAAC
1 GTCACATCTAAC
22079333 CTTTCAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.29
Consensus pattern (15 bp):
GTCACATCTAACTCA
Found at i:22086360 original size:2 final size:2
Alignment explanation
Indices: 22086353--22086384 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22086343 TGTTCATTAA
22086353 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22086385 GATGCTAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22086942 original size:23 final size:25
Alignment explanation
Indices: 22086916--22087002 Score: 71
Period size: 25 Copynumber: 3.8 Consensus size: 25
22086906 TATTTTTATA
22086916 TATTTAT-TATACTCAT-TATTTTT
1 TATTTATATATACTCATATATTTTT
* *
22086939 TATTTATATATATTCATATATTTTG
1 TATTTATATATACTCATATATTTTT
* * *
22086964 AATTTATGTAT-CT-ATAT-TTTAT
1 TATTTATATATACTCATATATTTTT
*
22086986 T-TTTATAT-TACTTATAT
1 TATTTATATATACTCATAT
22087003 TCATTAATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
20 1 0.02
21 8 0.16
22 7 0.14
23 11 0.22
24 9 0.18
25 15 0.29
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (25 bp):
TATTTATATATACTCATATATTTTT
Found at i:22086955 original size:24 final size:24
Alignment explanation
Indices: 22086916--22086962 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
22086906 TATTTTTATA
22086916 TATTTATTATACTCAT-TATTTTT
1 TATTTATTATACTCATATATTTTT
*
22086939 TATTTATATATATTCATATATTTT
1 TATTTAT-TATACTCATATATTTT
22086963 GAATTTATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 8 0.38
25 6 0.29
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (24 bp):
TATTTATTATACTCATATATTTTT
Found at i:22087468 original size:16 final size:16
Alignment explanation
Indices: 22087437--22087481 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
22087427 GATAATTTAA
22087437 AATATAATATAATAATAT
1 AATATAA-A-AATAATAT
22087455 AATATAAAAATAATAT
1 AATATAAAAATAATAT
22087471 AA-ATAAAAATA
1 AATATAAAAATA
22087482 TAAAAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.33
16 10 0.37
17 1 0.04
18 7 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATATAAAAATAATAT
Found at i:22087502 original size:23 final size:23
Alignment explanation
Indices: 22087434--22087503 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
22087424 TTTGATAATT
* *
22087434 TAAAATATAATATAATAATATAATA
1 TAAAA-ATAATATAAT-TTAAAATA
* *
22087459 TAAAAATAATATAAATAAAAATA
1 TAAAAATAATATAATTTAAAATA
22087482 TAAAAATAATATAATTTAAAAT
1 TAAAAATAATATAATTTAAAAT
22087504 TTTTAAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 25 0.64
24 9 0.23
25 5 0.13
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
TAAAAATAATATAATTTAAAATA
Found at i:22087541 original size:20 final size:20
Alignment explanation
Indices: 22087505--22087543 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
22087495 ATTTAAAATT
*
22087505 TTTAAAAAATTATAAATAAA
1 TTTAAAAAATCATAAATAAA
22087525 TTTAATAAAATCA-AAATAA
1 TTTAA-AAAATCATAAATAA
22087544 TTATATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
TTTAAAAAATCATAAATAAA
Found at i:22087835 original size:14 final size:14
Alignment explanation
Indices: 22087816--22087864 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
22087806 GTTTGATTAA
22087816 TTTTAAATTAAATT
1 TTTTAAATTAAATT
*
22087830 TTTTAAAATTATATT
1 TTTT-AAATTAAATT
**
22087845 AATTAAATTAAATT
1 TTTTAAATTAAATT
22087859 ATTTTA
1 -TTTTA
22087865 TTTTCATTGA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 13 0.48
15 14 0.52
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTTAAATTAAATT
Found at i:22089176 original size:63 final size:64
Alignment explanation
Indices: 22089098--22089224 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
22089088 TTTATGTAAT
*
22089098 AAGGCATTGACCTCTTTTGATC-CAAAAAAAAATAAATGGTAAGCATATAGAGAAAAACAATTA
1 AAGGCATTGACCTCTTTTGATCTCAAAAAAAAAAAAATGGTAAGCATATAGAGAAAAACAATTA
* *
22089161 AAGGCATTGACCTCTTTTGATCTTAAAAAAAAAAAAATGGTAAGCATATGGAGAAAAACAATTA
1 AAGGCATTGACCTCTTTTGATCTCAAAAAAAAAAAAATGGTAAGCATATAGAGAAAAACAATTA
22089225 CAAGAGAGAG
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
63 22 0.37
64 38 0.63
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.24
Consensus pattern (64 bp):
AAGGCATTGACCTCTTTTGATCTCAAAAAAAAAAAAATGGTAAGCATATAGAGAAAAACAATTA
Found at i:22090359 original size:11 final size:12
Alignment explanation
Indices: 22090343--22090405 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
22090333 ATGTTAAAAA
22090343 AATTATTT-TTT
1 AATTATTTATTT
22090354 AATTATTTATTT
1 AATTATTTATTT
*
22090366 AGTT-TTATATTT
1 AATTATT-TATTT
*
22090378 -A-TATATATTT
1 AATTATTTATTT
*
22090388 AATTATATATTT
1 AATTATTTATTT
22090400 ATATTA
1 A-ATTA
22090406 AAAACTAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
10 6 0.14
11 12 0.28
12 21 0.49
13 4 0.09
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (12 bp):
AATTATTTATTT
Found at i:22090396 original size:22 final size:22
Alignment explanation
Indices: 22090361--22090403 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
22090351 TTTAATTATT
* *
22090361 TATTTAGTTTTATATTTATATA
1 TATTTAATTATATATTTATATA
22090383 TATTTAATTATATATTTATAT
1 TATTTAATTATATATTTATAT
22090404 TAAAAACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TATTTAATTATATATTTATATA
Found at i:22090418 original size:19 final size:20
Alignment explanation
Indices: 22090394--22090435 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
22090384 ATTTAATTAT
*
22090394 ATATTTATA-TTAAAAACTA
1 ATATTTATATTTAAAAAATA
22090413 ATATTTATATTTAAAAAATA
1 ATATTTATATTTAAAAAATA
22090433 ATA
1 ATA
22090436 CAATATCAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
ATATTTATATTTAAAAAATA
Found at i:22091955 original size:19 final size:20
Alignment explanation
Indices: 22091931--22091974 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
22091921 GAATATTTAA
*
22091931 AAAATTCTGTAAA-AAAA-TC
1 AAAATTATG-AAAGAAAACTC
22091950 AAAATTATGAAAGAAAACTC
1 AAAATTATGAAAGAAAACTC
22091970 AAAAT
1 AAAAT
22091975 AAAAAATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 12 0.55
20 7 0.32
ACGTcount: A:0.61, C:0.09, G:0.07, T:0.23
Consensus pattern (20 bp):
AAAATTATGAAAGAAAACTC
Found at i:22092792 original size:10 final size:10
Alignment explanation
Indices: 22092777--22092808 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
22092767 TCATTTGTCT
22092777 TTTTTTAAAA
1 TTTTTTAAAA
22092787 TTTTTT--AA
1 TTTTTTAAAA
22092795 TTTTTTAAAA
1 TTTTTTAAAA
22092805 TTTT
1 TTTT
22092809 AACCTTTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:22098561 original size:18 final size:19
Alignment explanation
Indices: 22098538--22098578 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
22098528 GAATCAAAAA
22098538 ATATA-TTTTTAAATTTTT
1 ATATATTTTTTAAATTTTT
*
22098556 ATATATTTTTTTAATTTTT
1 ATATATTTTTTAAATTTTT
22098575 -TATA
1 ATATA
22098579 AAATAAAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATATATTTTTTAAATTTTT
Found at i:22098566 original size:20 final size:20
Alignment explanation
Indices: 22098538--22098578 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
22098528 GAATCAAAAA
22098538 ATATATTTTTAAATTTTTAT
1 ATATATTTTTAAATTTTTAT
* *
22098558 ATATTTTTTTAATTTTTTAT
1 ATATATTTTTAAATTTTTAT
22098578 A
1 A
22098579 AAATAAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
ATATATTTTTAAATTTTTAT
Found at i:22098611 original size:34 final size:32
Alignment explanation
Indices: 22098573--22098646 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 32
22098563 TTTTTAATTT
22098573 TTTATAAAATAAAGATAATAATTTTATATTAAAA
1 TTTATAAAAT-AAGATAAT-ATTTTATATTAAAA
* * *
22098607 TTTATTTAAATATGTTAATATTTTATATTAAAA
1 TTTA-TAAAATAAGATAATATTTTATATTAAAA
22098640 TTATATA
1 TT-TATA
22098647 TAAAAAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
33 17 0.50
34 12 0.35
35 5 0.15
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (32 bp):
TTTATAAAATAAGATAATATTTTATATTAAAA
Found at i:22099249 original size:20 final size:18
Alignment explanation
Indices: 22099218--22099272 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 18
22099208 AAAAAACTAT
*
22099218 ATTTTT-ATTTTTATTAA
1 ATTTTTAATTTTTAATAA
22099235 ATTTATATAATTTTTAATAA
1 ATTT-T-TAATTTTTAATAA
22099255 ATTTTTAATTTTTTAATA
1 ATTTTTAA-TTTTTAATA
22099273 TTATCTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.12
18 4 0.12
19 11 0.33
20 14 0.42
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTTTAATTTTTAATAA
Found at i:22099538 original size:21 final size:22
Alignment explanation
Indices: 22099514--22099574 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
22099504 ACAAATAAAA
22099514 TATATAATATAATATTTA-TTT
1 TATATAATATAATATTTATTTT
22099535 TATA-AATATAAATAATTTATTTT
1 TATATAATAT-AAT-ATTTATTTT
* *
22099558 TAAATAAT-TAAAATTTA
1 TATATAATATAATATTTA
22099575 CGTAATCCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
20 5 0.15
21 12 0.35
22 7 0.21
23 7 0.21
24 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TATATAATATAATATTTATTTT
Found at i:22099555 original size:22 final size:20
Alignment explanation
Indices: 22099514--22099563 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 20
22099504 ACAAATAAAA
22099514 TATATAATATAATATTTATTT
1 TATA-AATATAATATTTATTT
22099535 TATAAATATAAATAATTTATTT
1 TATAAATAT-AAT-ATTTATTT
22099557 T-TAAATA
1 TATAAATA
22099564 ATTAAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.19
21 13 0.48
22 9 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TATAAATATAATATTTATTT
Found at i:22099864 original size:2 final size:2
Alignment explanation
Indices: 22099857--22099886 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22099847 ATAACCATTA
22099857 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22099887 TGATGTTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22100420 original size:8 final size:8
Alignment explanation
Indices: 22100403--22100502 Score: 55
Period size: 8 Copynumber: 12.4 Consensus size: 8
22100393 TTAATGATTG
*
22100403 TATATTTT
1 TATATATT
22100411 TATATATT
1 TATATATT
*
22100419 TATTATACT
1 TA-TATATT
*
22100428 CATATTATT
1 TATA-TATT
*
22100437 T-TTTATT
1 TATATATT
22100444 TATATATAT
1 TATATAT-T
22100453 TCATATATT
1 T-ATATATT
*
22100462 T-TGTAATT
1 TATAT-ATT
* *
22100470 TATGTATC
1 TATATATT
22100478 TATAT-TT
1 TATATATT
*
22100485 TATTTATT
1 TATATATT
22100493 TATAT-TT
1 TATATATT
22100500 TAT
1 TAT
22100503 TTGTATATTA
Statistics
Matches: 71, Mismatches: 13, Indels: 17
0.70 0.13 0.17
Matches are distributed among these distances:
7 17 0.24
8 32 0.45
9 16 0.23
10 6 0.08
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (8 bp):
TATATATT
Found at i:22100458 original size:26 final size:25
Alignment explanation
Indices: 22100415--22100497 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
22100405 TATTTTTATA
22100415 TATTTAT-TATACTCATATTATTTTT
1 TATTTATATATA-TCATATTATTTTT
*
22100440 TATTTATATATATTCATA-TATTTTG
1 TATTTATATATA-TCATATTATTTTT
* * *
22100465 TAATT-TATGTATCTATATT-TTATT
1 TATTTATATATATC-ATATTATTTTT
22100489 TATTTATAT
1 TATTTATAT
22100498 TTTATTTGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
23 2 0.04
24 15 0.32
25 21 0.45
26 9 0.19
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (25 bp):
TATTTATATATATCATATTATTTTT
Found at i:22100518 original size:22 final size:20
Alignment explanation
Indices: 22100480--22100520 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
22100470 TATGTATCTA
*
22100480 TATTTTATTTATTTATATTT
1 TATTTTATTTACTTATATTT
22100500 TATTTGTATATTACTTATATT
1 TATTT-TAT-TTACTTATATT
22100521 CATTAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 10 0.56
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (20 bp):
TATTTTATTTACTTATATTT
Found at i:22100824 original size:5 final size:5
Alignment explanation
Indices: 22100814--22100859 Score: 51
Period size: 5 Copynumber: 9.6 Consensus size: 5
22100804 GATAATTTAA
* * *
22100814 AATAT AATAT AAAAT AATAT AATTT AA-A- AATAT AAAAT AATAT AAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AAT
22100860 TTAAAATTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
3 2 0.06
4 1 0.03
5 30 0.91
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (5 bp):
AATAT
Found at i:22100846 original size:23 final size:23
Alignment explanation
Indices: 22100819--22100865 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
22100809 TTTAAAATAT
22100819 AATATAAAATAATATAATTTAAA
1 AATATAAAATAATATAATTTAAA
22100842 AATATAAAATAATATAATTTAAA
1 AATATAAAATAATATAATTTAAA
22100865 A
1 A
22100866 TTTTCATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
AATATAAAATAATATAATTTAAA
Found at i:22100853 original size:28 final size:27
Alignment explanation
Indices: 22100805--22100866 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 27
22100795 ATTAAATTTG
*
22100805 ATAATTTAAAATATAATATAAAATAAT
1 ATAATTTAAAATATAAAATAAAATAAT
22100832 ATAATTTAAAA-AT---ATAAAATAAT
1 ATAATTTAAAATATAAAATAAAATAAT
22100855 ATAATTTAAAAT
1 ATAATTTAAAAT
22100867 TTTCATAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
23 21 0.62
26 2 0.06
27 11 0.32
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
ATAATTTAAAATATAAAATAAAATAAT
Found at i:22100942 original size:23 final size:23
Alignment explanation
Indices: 22100907--22100951 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
22100897 ATTTTATTTC
22100907 TTTAAAAATTATAAAATATAAAT
1 TTTAAAAATTATAAAATATAAAT
*
22100930 TTTATAAAA-TATATAATATAAA
1 TTTA-AAAATTATAAAATATAAA
22100952 AATAATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
TTTAAAAATTATAAAATATAAAT
Found at i:22101170 original size:15 final size:14
Alignment explanation
Indices: 22101149--22101194 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
22101139 TTCGATTAAT
22101149 TTTAAATTAAATTA
1 TTTAAATTAAATTA
22101163 TTTAAAATTAAATTA
1 TTT-AAATTAAATTA
* *
22101178 ATTAAATTAAATCA
1 TTTAAATTAAATTA
22101192 TTT
1 TTT
22101195 TATTTTTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTAAATTAAATTA
Found at i:22101187 original size:20 final size:20
Alignment explanation
Indices: 22101150--22101188 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
22101140 TCGATTAATT
*
22101150 TTAAATTAAATTATTTAAAA
1 TTAAATTAAATTAATTAAAA
22101170 TTAAATT-AATTAAATTAAA
1 TTAAATTAAATT-AATTAAA
22101189 TCATTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAAATTAAATTAATTAAAA
Found at i:22102429 original size:5 final size:5
Alignment explanation
Indices: 22102419--22102446 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
22102409 GAATGCTGTA
22102419 AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAA
22102447 AGAAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:22107970 original size:29 final size:29
Alignment explanation
Indices: 22107909--22107970 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
22107899 GAAGGTACTC
* * **
22107909 TTTAATCTTATTTCTCAAAATAAGTTAGT
1 TTTAAACTTATTTCTCAAAATAAGATAAA
22107938 TTTAAACTTAATTT-TCAAAATAAGATAAA
1 TTTAAACTT-ATTTCTCAAAATAAGATAAA
22107967 TTTA
1 TTTA
22107971 TCCCTGTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (29 bp):
TTTAAACTTATTTCTCAAAATAAGATAAA
Found at i:22108743 original size:15 final size:16
Alignment explanation
Indices: 22108723--22108756 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22108713 TCAGACACAG
*
22108723 AAACACC-AAAAACTC
1 AAACACCTAAAAACCC
22108738 AAACACCTAAAAACCC
1 AAACACCTAAAAACCC
22108754 AAA
1 AAA
22108757 AGCTTTCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.62, C:0.32, G:0.00, T:0.06
Consensus pattern (16 bp):
AAACACCTAAAAACCC
Found at i:22108968 original size:11 final size:12
Alignment explanation
Indices: 22108944--22108969 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22108934 AAAAAATAAT
22108944 AATAAACAAAAA
1 AATAAACAAAAA
22108956 AATAAACAAAAA
1 AATAAACAAAAA
22108968 AA
1 AA
22108970 GGAGAATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AATAAACAAAAA
Found at i:22109935 original size:3 final size:3
Alignment explanation
Indices: 22109927--22109964 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
22109917 CGTGTTTAAA
22109927 AAT AAT AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22109965 CTTAAAATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:22116627 original size:7 final size:7
Alignment explanation
Indices: 22116615--22116639 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22116605 TTTTCCTGCA
22116615 TATTGAT
1 TATTGAT
22116622 TATTGAT
1 TATTGAT
22116629 TATTGAT
1 TATTGAT
22116636 TATT
1 TATT
22116640 ATCTATTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTGAT
Found at i:22117947 original size:10 final size:9
Alignment explanation
Indices: 22117931--22117967 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
22117921 AATATAAAAT
22117931 ATTTTTTTA
1 ATTTTTTTA
22117940 ATTTTTTTA
1 ATTTTTTTA
*
22117949 ATATTTTTA
1 ATTTTTTTA
22117958 ATATTTTTTA
1 AT-TTTTTTA
22117968 TTAAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 19 0.76
10 6 0.24
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
ATTTTTTTA
Found at i:22118030 original size:2 final size:2
Alignment explanation
Indices: 22118023--22118051 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22118013 ATTTAAAATT
22118023 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22118052 CTCAAAGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22118652 original size:18 final size:19
Alignment explanation
Indices: 22118629--22118670 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 19
22118619 TAGAATCAAA
22118629 TTATATATTTTTT-AATTT
1 TTATATATTTTTTAAATTT
22118647 TTATATATTTTTTAAATTT
1 TTATATATTTTTTAAATTT
22118666 TTATA
1 TTATA
22118671 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATATATTTTTTAAATTT
Found at i:22118766 original size:25 final size:23
Alignment explanation
Indices: 22118738--22118794 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
22118728 AAATAATATA
22118738 AAATTTAAAATTAATAAATCAAATC
1 AAATTTAAAATT--TAAATCAAATC
*
22118763 AAATTAATAAAATTTAATTCAAATC
1 AAATT--TAAAATTTAAATCAAATC
22118788 -AATTTAA
1 AAATTTAA
22118795 TAAAAATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 3 0.10
24 4 0.14
25 15 0.52
27 7 0.24
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (23 bp):
AAATTTAAAATTTAAATCAAATC
Found at i:22118806 original size:25 final size:25
Alignment explanation
Indices: 22118750--22118806 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
22118740 ATTTAAAATT
22118750 AATAAA-TCAAATCAAATTAATAAA
1 AATAAATTCAAATCAAATTAATAAA
* * *
22118774 ATTTAATTCAAATCAATTTAATAAA
1 AATAAATTCAAATCAAATTAATAAA
22118799 AATAAATT
1 AATAAATT
22118807 TTAAATTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (25 bp):
AATAAATTCAAATCAAATTAATAAA
Found at i:22119249 original size:30 final size:30
Alignment explanation
Indices: 22119189--22119283 Score: 95
Period size: 30 Copynumber: 3.1 Consensus size: 30
22119179 ATTCTTTGTT
* ** *
22119189 TATATATTTATATCATATAAAATATTAAAA
1 TATATATTTATATTATATTTAATATAAAAA
*
22119219 TATATATTTATATTATATTTTATATAAAAA
1 TATATATTTATATTATATTTAATATAAAAA
*
22119249 T-TATATATTATAATT-TGTATTAATATAAAAA
1 TATATAT-TTAT-ATTATAT-TTAATATAAAAA
22119280 TATA
1 TATA
22119284 AAATATATCT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
29 5 0.09
30 32 0.59
31 15 0.28
32 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (30 bp):
TATATATTTATATTATATTTAATATAAAAA
Found at i:22120106 original size:16 final size:17
Alignment explanation
Indices: 22120075--22120107 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22120065 TCTTGTTATA
22120075 AATGTGGTTATATTCTT
1 AATGTGGTTATATTCTT
*
22120092 AATGTTGTT-TATTCTT
1 AATGTGGTTATATTCTT
22120108 TTTATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.21, C:0.06, G:0.15, T:0.58
Consensus pattern (17 bp):
AATGTGGTTATATTCTT
Found at i:22120135 original size:131 final size:130
Alignment explanation
Indices: 22119882--22120212 Score: 583
Period size: 131 Copynumber: 2.5 Consensus size: 130
22119872 CATTTGGACA
*
22119882 TTTGAAGGTTTTTGCTTCGTGGGTTTTCAGCTAGGACTGTTTATAAATCT-TGATCTTGTTATAA
1 TTTGAAGGTTTTGGCTTCGTGGGTTTTCAGCTAGGACTGTTTATAAATCTGTGATCTTGTTATAA
22119946 ATGTGGTTAATTCTTAATGCTGTTTATTCTTTTTATTTTTTCCTTTTCTTTTTGGAATTTAGATG
66 ATGTGGTTAATTCTTAATGCTGTTTATTCTTTTTATTTTTTCCTTTTCTTTTTGGAATTTAGATG
22120011 TTTGAAGGTTTTGGCTTCGTGGGTTTTCAGCTAGGACTGTTTATAAATCTGTGATCTTGTTATAA
1 TTTGAAGGTTTTGGCTTCGTGGGTTTTCAGCTAGGACTGTTTATAAATCTGTGATCTTGTTATAA
* *
22120076 ATGTGGTTATATTCTTAATGTTGTTTATTCTTTTTATTTTTTCCTTTTCTTTTTGGAATTTGGAT
66 ATGTGGTTA-ATTCTTAATGCTGTTTATTCTTTTTATTTTTTCCTTTTCTTTTTGGAATTTAGAT
22120141 G
130 G
* * * *
22120142 TTTGAAGGCTTTGGCTTCATGGGTTTTCAGCGAGGACTGTTTATAAATCTGTGATCTCGTTATAA
1 TTTGAAGGTTTTGGCTTCGTGGGTTTTCAGCTAGGACTGTTTATAAATCTGTGATCTTGTTATAA
22120207 ATGTGG
66 ATGTGG
22120213 AATGCAATTT
Statistics
Matches: 193, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
129 49 0.25
130 23 0.12
131 121 0.63
ACGTcount: A:0.19, C:0.10, G:0.21, T:0.50
Consensus pattern (130 bp):
TTTGAAGGTTTTGGCTTCGTGGGTTTTCAGCTAGGACTGTTTATAAATCTGTGATCTTGTTATAA
ATGTGGTTAATTCTTAATGCTGTTTATTCTTTTTATTTTTTCCTTTTCTTTTTGGAATTTAGATG
Found at i:22125533 original size:15 final size:15
Alignment explanation
Indices: 22125499--22125527 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
22125489 ATACGATATT
22125499 AATATGATATGAAAA
1 AATATGATATGAAAA
22125514 AATAT-ATATGAAAA
1 AATATGATATGAAAA
22125528 TGATATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (15 bp):
AATATGATATGAAAA
Found at i:22126005 original size:21 final size:21
Alignment explanation
Indices: 22125988--22126071 Score: 82
Period size: 21 Copynumber: 4.0 Consensus size: 21
22125978 TTGATTTTGA
*
22125988 TAACTTTTGATAAAATTTTAG
1 TAACTTTCGATAAAATTTTAG
*
22126009 TAACTTTCGATATAATTTTAG
1 TAACTTTCGATAAAATTTTAG
* *
22126030 TAATCATT-GATTAAATTTTAG
1 TAA-CTTTCGATAAAATTTTAG
*
22126051 TAACCTCTT-GATATAATTTTA
1 TAA-CT-TTCGATAAAATTTTA
22126072 ATAAATAATT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
21 37 0.71
22 15 0.29
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (21 bp):
TAACTTTCGATAAAATTTTAG
Found at i:22126242 original size:22 final size:22
Alignment explanation
Indices: 22126207--22126250 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
22126197 TTATATAATA
*
22126207 AAAATATTGTTTCATTCAAATTT
1 AAAATATTGTTTCACT-AAATTT
*
22126230 AAAAT-TTTTTTCACTAAATTT
1 AAAATATTGTTTCACTAAATTT
22126251 TTTATTGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (22 bp):
AAAATATTGTTTCACTAAATTT
Found at i:22126404 original size:22 final size:22
Alignment explanation
Indices: 22126379--22126618 Score: 158
Period size: 22 Copynumber: 10.9 Consensus size: 22
22126369 ATAATTGACA
* * *
22126379 ATTAAGTTATTATTAATTTATT
1 ATTAAATTATTAATGATTTATT
* * *
22126401 ATTATATTATCAACGATTTATT
1 ATTAAATTATTAATGATTTATT
** * * *
22126423 GCTAAGTTATTAGTGATATATT
1 ATTAAATTATTAATGATTTATT
* *
22126445 ATTAAATTATCAATGATTTACT
1 ATTAAATTATTAATGATTTATT
* ** * *
22126467 ACTAAATTAGCATTGATTTACT
1 ATTAAATTATTAATGATTTATT
* *
22126489 ATTAACTTATAAATGATTTATT
1 ATTAAATTATTAATGATTTATT
* * * *
22126511 ACTAAGTTATGAATAATTTATT
1 ATTAAATTATTAATGATTTATT
* * *
22126533 ATTAAATTGTTAATAATTTACT
1 ATTAAATTATTAATGATTTATT
* * *
22126555 ACTAAATTACTAATGATTTATA
1 ATTAAATTATTAATGATTTATT
* *
22126577 ATAAAATTA-TAATTGATTTACT
1 ATTAAATTATTAA-TGATTTATT
* *
22126599 ATTAATTTATTAATAATTTA
1 ATTAAATTATTAATGATTTA
22126619 CTATAAAGAT
Statistics
Matches: 164, Mismatches: 52, Indels: 4
0.75 0.24 0.02
Matches are distributed among these distances:
21 3 0.02
22 158 0.96
23 3 0.02
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (22 bp):
ATTAAATTATTAATGATTTATT
Found at i:22126572 original size:88 final size:88
Alignment explanation
Indices: 22126406--22126643 Score: 248
Period size: 88 Copynumber: 2.7 Consensus size: 88
22126396 TTATTATTAT
* * * * * * *
22126406 ATTATCAACGATTTATTGCTAAGTTATTAGTGATATATTATTAAATTATCAATGATTTACTACTA
1 ATTATAAATGATTTATTACTAAGTTATTAATAATTTATTATTAAATTATCAATAATTTACTACTA
* *
22126471 AATTAGCATTGATTTACT-ATTAA
66 AATTAGCAATGATTTA-TAATAAA
* * * *
22126494 CTTATAAATGATTTATTACTAAGTTATGAATAATTTATTATTAAATTGTTAATAATTTACTACTA
1 ATTATAAATGATTTATTACTAAGTTATTAATAATTTATTATTAAATTATCAATAATTTACTACTA
22126559 AATTA-CTAATGATTTATAATAAA
66 AATTAGC-AATGATTTATAATAAA
* * * * * * *
22126582 ATTATAATTGATTTACTATTAATTTATTAATAATTTACTA-TAAAGATATCAATAATTAACTA
1 ATTATAAATGATTTATTACTAAGTTATTAATAATTTATTATTAAA-TTATCAATAATTTACTA
22126644 ATTTATGATT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
87 6 0.05
88 117 0.95
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (88 bp):
ATTATAAATGATTTATTACTAAGTTATTAATAATTTATTATTAAATTATCAATAATTTACTACTA
AATTAGCAATGATTTATAATAAA
Found at i:22126635 original size:22 final size:22
Alignment explanation
Indices: 22126592--22126643 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
22126582 ATTATAATTG
* ** *
22126592 ATTTACTATTAATTTATTAATA
1 ATTTACTATAAAGATATCAATA
22126614 ATTTACTATAAAGATATCAATA
1 ATTTACTATAAAGATATCAATA
*
22126636 ATTAACTA
1 ATTTACTA
22126644 ATTTATGATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTTACTATAAAGATATCAATA
Found at i:22126658 original size:74 final size:74
Alignment explanation
Indices: 22126570--22126717 Score: 174
Period size: 74 Copynumber: 2.0 Consensus size: 74
22126560 ATTACTAATG
* * * * *
22126570 ATTTATAATAAAATTATAATTGATTTACTATTAATTTATTAATAATTTACTATA-AAGA-TATCA
1 ATTTATAATAAAATTATAACTAATTTACTACTAAATTATCAATAATTTA-TATATAA-ATTATCA
22126633 ATAATTAACTA
64 ATAATTAACTA
* * * *
22126644 ATTTATGATTAAATTATCACTAATTTATTACTAAATTATCAATAATTTATATATAAATTATCAAT
1 ATTTATAATAAAATTATAACTAATTTACTACTAAATTATCAATAATTTATATATAAATTATCAAT
*
22126709 AATTTACTA
66 AATTAACTA
22126718 TTATGTTATT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
73 5 0.08
74 57 0.92
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (74 bp):
ATTTATAATAAAATTATAACTAATTTACTACTAAATTATCAATAATTTATATATAAATTATCAAT
AATTAACTA
Found at i:22126666 original size:22 final size:21
Alignment explanation
Indices: 22126642--22126720 Score: 104
Period size: 22 Copynumber: 3.6 Consensus size: 21
22126632 AATAATTAAC
*
22126642 TAATTTATGATTAAATTATCAC
1 TAATTTAT-ATTAAATTATCAA
*
22126664 TAATTTATTACTAAATTATCAA
1 TAATTTA-TATTAAATTATCAA
22126686 TAATTTATATATAAATTATCAA
1 TAATTTATAT-TAAATTATCAA
22126708 TAATTTACTATTA
1 TAATTTA-TATTA
22126721 TGTTATTATG
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
21 2 0.04
22 45 0.88
23 4 0.08
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.47
Consensus pattern (21 bp):
TAATTTATATTAAATTATCAA
Found at i:22126699 original size:11 final size:11
Alignment explanation
Indices: 22126642--22126714 Score: 58
Period size: 11 Copynumber: 6.6 Consensus size: 11
22126632 AATAATTAAC
* *
22126642 TAATTTATGAT
1 TAATTTATCAA
* *
22126653 TAAATTATCAC
1 TAATTTATCAA
* *
22126664 TAATTTATTAC
1 TAATTTATCAA
*
22126675 TAAATTATCAA
1 TAATTTATCAA
22126686 TAATTTAT-ATA
1 TAATTTATCA-A
*
22126697 TAAATTATCAA
1 TAATTTATCAA
22126708 TAATTTA
1 TAATTTA
22126715 CTATTATGTT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
10 1 0.02
11 47 0.96
12 1 0.02
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.47
Consensus pattern (11 bp):
TAATTTATCAA
Found at i:22126726 original size:22 final size:22
Alignment explanation
Indices: 22126679--22126763 Score: 84
Period size: 22 Copynumber: 3.9 Consensus size: 22
22126669 TATTACTAAA
**
22126679 TTATCAATAATTTA-TATATAAA
1 TTATCAATAATTTACTAT-TATG
22126701 TTATCAATAATTTACTATTATG
1 TTATCAATAATTTACTATTATG
* * *
22126723 TTAT-TATGCATTTACTATTTTG
1 TTATCAAT-AATTTACTATTATG
*
22126745 TTATCATTAATTTACTATT
1 TTATCAATAATTTACTATT
22126764 TAGTTTTTGA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.04
22 46 0.88
23 4 0.08
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.53
Consensus pattern (22 bp):
TTATCAATAATTTACTATTATG
Found at i:22126850 original size:21 final size:22
Alignment explanation
Indices: 22126822--22126877 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
22126812 ACTATGATTC
*
22126822 ATTATTAAACTATCGCTAATTT
1 ATTATTAAACTATCGATAATTT
* *
22126844 A-TATTAAATTATCTATAATTT
1 ATTATTAAACTATCGATAATTT
*
22126865 ATTATTAAGCTAT
1 ATTATTAAACTAT
22126878 TTAACTATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (22 bp):
ATTATTAAACTATCGATAATTT
Found at i:22127012 original size:19 final size:20
Alignment explanation
Indices: 22126981--22127018 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
22126971 GTATTAAATT
22126981 ATTTATAATTTAA-TACTAA
1 ATTTATAATTTAATTACTAA
22127000 ATTTATCAA-TTAATTACTA
1 ATTTAT-AATTTAATTACTA
22127019 CTAAATTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTATAATTTAATTACTAA
Found at i:22127065 original size:22 final size:21
Alignment explanation
Indices: 22127039--22127100 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
22127029 ATTTACTTAC
*
22127039 TATTAAGTTATCACTAATTTAT
1 TATTAAGTTATAACTAATTT-T
* * *
22127061 TATTAAATTATAATTGATTTT
1 TATTAAGTTATAACTAATTTT
22127082 TATTAAGTTATTAA-TAATT
1 TATTAAGTTA-TAACTAATT
22127101 AACAACTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 14 0.42
22 19 0.58
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (21 bp):
TATTAAGTTATAACTAATTTT
Done.