Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 21 of 129
Found at i:4192700 original size:21 final size:21
Alignment explanation
Indices: 4192676--4192719 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
4192666 CAAGCATGTG
4192676 ATGGAAAATAATGTGAGAACA
1 ATGGAAAATAATGTGAGAACA
*
4192697 ATGGAAAATGATGTGAGAACA
1 ATGGAAAATAATGTGAGAACA
4192718 AT
1 AT
4192720 TTGGAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.50, C:0.05, G:0.25, T:0.20
Consensus pattern (21 bp):
ATGGAAAATAATGTGAGAACA
Found at i:4194811 original size:14 final size:15
Alignment explanation
Indices: 4194787--4194815 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4194777 CCAGTGATAT
4194787 AAGAGTATGATTTTA
1 AAGAGTATGATTTTA
4194802 AAGA-TATGATTTTA
1 AAGAGTATGATTTTA
4194816 GAGTTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (15 bp):
AAGAGTATGATTTTA
Found at i:4195491 original size:30 final size:30
Alignment explanation
Indices: 4195435--4195491 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
4195425 CTTGAAAATA
**
4195435 AAAATTGAAAGAAAAAAGTGAAATGAAAGG
1 AAAATTGAAAGAAAAAAGAAAAATGAAAGG
*
4195465 AAAATTGAAA-AAGAAAGAAAATATGAA
1 AAAATTGAAAGAAAAAAGAAAA-ATGAA
4195492 GGCACTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 8 0.35
30 15 0.65
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (30 bp):
AAAATTGAAAGAAAAAAGAAAAATGAAAGG
Found at i:4195791 original size:6 final size:6
Alignment explanation
Indices: 4195780--4195839 Score: 70
Period size: 6 Copynumber: 9.8 Consensus size: 6
4195770 GGAATGAAGC
*
4195780 AAAAAT AAAAAT AAAAAT AAAAA- AATAAA- AAAATT AAAAAT AAAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT AAAAAT AAAAAT -AAAAAT
4195828 GAAAAAT AAAAA
1 -AAAAAT AAAAA
4195840 ATGAAAAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
5 4 0.08
6 32 0.67
7 12 0.25
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:4195805 original size:8 final size:7
Alignment explanation
Indices: 4195780--4195862 Score: 80
Period size: 7 Copynumber: 11.7 Consensus size: 7
4195770 GGAATGAAGC
4195780 AAAAAT-
1 AAAAATA
4195786 AAAAAT-
1 AAAAATA
4195792 AAAAATAA
1 AAAAAT-A
4195800 AAAAATAA
1 AAAAAT-A
*
4195808 AAAAATT
1 AAAAATA
4195815 AAAAATA
1 AAAAATA
*
4195822 AAAAATG
1 AAAAATA
4195829 AAAAATA
1 AAAAATA
*
4195836 AAAAATG
1 AAAAATA
*
4195843 AAAAATG
1 AAAAATA
*
4195850 AGAAATGA
1 AAAAAT-A
4195858 AAAAA
1 AAAAA
4195863 AAGAGAAAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
6 12 0.18
7 36 0.55
8 18 0.27
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (7 bp):
AAAAATA
Found at i:4195819 original size:29 final size:28
Alignment explanation
Indices: 4195780--4195863 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 28
4195770 GGAATGAAGC
4195780 AAAAA-TAAAAATAAAAATAAAAAAATAA
1 AAAAATTAAAAATAAAAATAAAAAAAT-A
*
4195808 AAAAATTAAAAATAAAAA-ATGAAAAATA
1 AAAAATTAAAAATAAAAATA-AAAAAATA
* *
4195836 AAAAATGAAAAATGAGAAATGAAAAAAA
1 AAAAATTAAAAAT-AAAAAT-AAAAAAA
4195864 AGAGAAAATG
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
28 19 0.40
29 22 0.47
30 5 0.11
31 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (28 bp):
AAAAATTAAAAATAAAAATAAAAAAATA
Found at i:4195841 original size:14 final size:14
Alignment explanation
Indices: 4195780--4195861 Score: 96
Period size: 14 Copynumber: 5.9 Consensus size: 14
4195770 GGAATGAAGC
4195780 AAAAAT-AAAAAT-
1 AAAAATGAAAAATA
*
4195792 AAAAATAAAAAAATAA
1 AAAAAT-GAAAAAT-A
*
4195808 AAAAATTAAAAATA
1 AAAAATGAAAAATA
4195822 AAAAATGAAAAATA
1 AAAAATGAAAAATA
*
4195836 AAAAATGAAAAATG
1 AAAAATGAAAAATA
*
4195850 AGAAATGAAAAA
1 AAAAATGAAAAA
4195862 AAAGAGAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
12 6 0.10
14 44 0.71
15 6 0.10
16 6 0.10
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (14 bp):
AAAAATGAAAAATA
Found at i:4197033 original size:32 final size:33
Alignment explanation
Indices: 4196997--4197062 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 33
4196987 AGAACATTTA
* *
4196997 ATTTTTTGAC-TTAGTTTAGTCCAATCATTTTT
1 ATTTTTTGACTTTAGCTTAGTCCAATCACTTTT
* *
4197029 A-TTTTTGACTTTGGCTTAGTTCAATCACTTTT
1 ATTTTTTGACTTTAGCTTAGTCCAATCACTTTT
4197061 AT
1 AT
4197063 CTTCGACCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
31 8 0.29
32 20 0.71
ACGTcount: A:0.21, C:0.14, G:0.11, T:0.55
Consensus pattern (33 bp):
ATTTTTTGACTTTAGCTTAGTCCAATCACTTTT
Found at i:4197196 original size:33 final size:33
Alignment explanation
Indices: 4197159--4197237 Score: 83
Period size: 32 Copynumber: 2.4 Consensus size: 33
4197149 GTTACTTTTT
*
4197159 ACCTTGGTTCAGTCCAGTCA-CTTCTATT-TTTCA
1 ACCTTGGTTCAGTCCAATCACCTTC-ATTGTTT-A
* *
4197192 ACCTT-GTTCAGTTCAATCACCTTCATTGTTTG
1 ACCTTGGTTCAGTCCAATCACCTTCATTGTTTA
*
4197224 ACCTTGGCTCAGTC
1 ACCTTGGTTCAGTC
4197238 TGATCACCAC
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
32 20 0.53
33 18 0.47
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.41
Consensus pattern (33 bp):
ACCTTGGTTCAGTCCAATCACCTTCATTGTTTA
Found at i:4197307 original size:32 final size:32
Alignment explanation
Indices: 4197271--4197364 Score: 107
Period size: 32 Copynumber: 2.9 Consensus size: 32
4197261 GGGTAATTCT
*
4197271 AGTCACCTTCATCTTCGACCTTGACTTAGTCC
1 AGTCAACTTCATCTTCGACCTTGACTTAGTCC
* * * * *
4197303 AGTCAACTTCATCTACAACCTTGACTCAATCT
1 AGTCAACTTCATCTTCGACCTTGACTTAGTCC
* * *
4197335 AGTCATCTCCATCTTCGACCTTGGCTTAGT
1 AGTCAACTTCATCTTCGACCTTGACTTAGT
4197365 TTGGTCACTT
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.34
Consensus pattern (32 bp):
AGTCAACTTCATCTTCGACCTTGACTTAGTCC
Found at i:4197437 original size:33 final size:31
Alignment explanation
Indices: 4197369--4197447 Score: 77
Period size: 33 Copynumber: 2.5 Consensus size: 31
4197359 CTTAGTTTGG
* * *
4197369 TCACTTTCATTTTTGACATTGGTTTAGGTCGA
1 TCACTTTCATTTTTAACCTT-GTTTAGGTCAA
*
4197401 TCACTTTCACTTTTTAACCTTGTTTCAGTTCAA
1 TCACTTTCA-TTTTTAACCTTGTTT-AGGTCAA
* *
4197434 TCACCTTGATTTTT
1 TCACTTTCATTTTT
4197448 TTACCTTGGC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
32 18 0.46
33 21 0.54
ACGTcount: A:0.19, C:0.20, G:0.11, T:0.49
Consensus pattern (31 bp):
TCACTTTCATTTTTAACCTTGTTTAGGTCAA
Found at i:4197551 original size:31 final size:32
Alignment explanation
Indices: 4197514--4197599 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 32
4197504 TATGTTTTTG
*
4197514 ACCTTAGTTCAGTCT-ATCACTTTCATTTTCA
1 ACCTTAGTTCAGTCTAATCACTTTCATTATCA
* **
4197545 ACCTTAGTTCAGTTTGGTCACTTTCATTATCA
1 ACCTTAGTTCAGTCTAATCACTTTCATTATCA
* * *
4197577 ACCTTGGATCAATCTAATCACTT
1 ACCTTAGTTCAGTCTAATCACTT
4197600 CTATTTTTTG
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 14 0.31
32 31 0.69
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.42
Consensus pattern (32 bp):
ACCTTAGTTCAGTCTAATCACTTTCATTATCA
Found at i:4197736 original size:33 final size:33
Alignment explanation
Indices: 4197699--4197791 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 33
4197689 AAGTTATTTT
*
4197699 ATTTTTTGACTTTGGCTAAGACTATGACATCTC
1 ATTTTTTGACTTTGGCTAAGACTAAGACATCTC
* * * * *
4197732 ATTTTATGA-TTACGGTTAAGACCAAGTCATCTC
1 ATTTTTTGACTT-TGGCTAAGACTAAGACATCTC
* *
4197765 ATTTTTTTACTTTTGGCTTAGACTAAG
1 ATTTTTTGAC-TTTGGCTAAGACTAAG
4197792 TCTTTTTTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
32 2 0.04
33 31 0.69
34 10 0.22
35 2 0.04
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (33 bp):
ATTTTTTGACTTTGGCTAAGACTAAGACATCTC
Found at i:4198071 original size:11 final size:11
Alignment explanation
Indices: 4198055--4198177 Score: 92
Period size: 11 Copynumber: 10.8 Consensus size: 11
4198045 TTTTTAATAA
4198055 TTATTTTATCT
1 TTATTTTATCT
4198066 TTATTTTTAT-T
1 TTA-TTTTATCT
* *
4198077 TCATATTATCT
1 TTATTTTATCT
*
4198088 TTATATTTAGCT
1 TTAT-TTTATCT
*
4198100 TTAATTTATTCAT
1 TTATTTTA-TC-T
4198113 TTATCTTTAT-T
1 TTAT-TTTATCT
* *
4198124 CTACTTTTATTT
1 TTA-TTTTATCT
4198136 TTATTTTATCT
1 TTATTTTATCT
4198147 TTATTCTTATCT
1 TTATT-TTATCT
4198159 TTA-TTTAT-T
1 TTATTTTATCT
4198168 TTATTATTAT
1 TTATT-TTAT
4198178 TGTTAAAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
9 4 0.04
10 10 0.11
11 39 0.43
12 28 0.31
13 5 0.06
14 4 0.04
ACGTcount: A:0.22, C:0.09, G:0.01, T:0.68
Consensus pattern (11 bp):
TTATTTTATCT
Found at i:4198077 original size:17 final size:17
Alignment explanation
Indices: 4198055--4198162 Score: 66
Period size: 17 Copynumber: 6.5 Consensus size: 17
4198045 TTTTTAATAA
4198055 TTATTTTATCTTTATTT
1 TTATTTTATCTTTATTT
* * *
4198072 TTATTTCAT-ATTATCT
1 TTATTTTATCTTTATTT
* *
4198088 TTATATTTAGCTTTA-AT
1 TTAT-TTTATCTTTATTT
* *
4198105 TTA-TTCA--TTTATCT
1 TTATTTTATCTTTATTT
*
4198119 TTATTCTA-CTTTTATTT
1 TTATTTTATC-TTTATTT
*
4198136 TTATTTTATCTTTATTC
1 TTATTTTATCTTTATTT
4198153 TTATCTTTAT
1 TTAT-TTTAT
4198163 TTATTTTATT
Statistics
Matches: 69, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
13 4 0.06
14 4 0.06
15 5 0.07
16 9 0.13
17 38 0.55
18 9 0.13
ACGTcount: A:0.21, C:0.10, G:0.01, T:0.68
Consensus pattern (17 bp):
TTATTTTATCTTTATTT
Found at i:4198091 original size:6 final size:6
Alignment explanation
Indices: 4198055--4198162 Score: 52
Period size: 6 Copynumber: 18.7 Consensus size: 6
4198045 TTTTTAATAA
* * * * *
4198055 TTAT-T TTATCT TTATTT TTAT-T TCAT-A TTATCT TTATAT TTAGCT
1 TTATCT TTATCT TTATCT TTATCT TTATCT TTATCT TTATCT TTATCT
* * *
4198100 TTA-AT TTATTCAT TTATCT TTAT-T CTA-CTT TTATTT TTAT-T TTATCT
1 TTATCT TTA-TC-T TTATCT TTATCT TTATC-T TTATCT TTATCT TTATCT
4198147 TTAT-T CTTATCT TTAT
1 TTATCT -TTATCT TTAT
4198163 TTATTTTATT
Statistics
Matches: 79, Mismatches: 13, Indels: 21
0.70 0.12 0.19
Matches are distributed among these distances:
5 24 0.30
6 48 0.61
7 3 0.04
8 4 0.05
ACGTcount: A:0.21, C:0.10, G:0.01, T:0.68
Consensus pattern (6 bp):
TTATCT
Found at i:4198096 original size:28 final size:27
Alignment explanation
Indices: 4198054--4198164 Score: 75
Period size: 28 Copynumber: 3.9 Consensus size: 27
4198044 TTTTTTAATA
4198054 ATTAT-TTTATCTTTATTTTTATTTCAT
1 ATTATCTTTAT-TTTATTTTTATTTCAT
4198081 ATTATCTTTATATTTAGCTTTAATT-TATTCAT
1 ATTATCTTTAT-TTTA--TTT--TTAT-TTCAT
* * *
4198113 -TTATCTTTATTCTACTTTTATTTTTAT
1 ATTATCTTTATTTTATTTTTA-TTTCAT
* *
4198140 TTTATCTTTATTCTTATCTTTATTT
1 ATTATCTTTATT-TTATTTTTATTT
4198165 ATTTTATTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
26 2 0.03
27 9 0.13
28 26 0.39
29 6 0.09
30 6 0.09
31 11 0.16
32 7 0.10
ACGTcount: A:0.22, C:0.10, G:0.01, T:0.68
Consensus pattern (27 bp):
ATTATCTTTATTTTATTTTTATTTCAT
Found at i:4199253 original size:13 final size:12
Alignment explanation
Indices: 4199204--4199254 Score: 59
Period size: 13 Copynumber: 4.2 Consensus size: 12
4199194 AGTTAATTTT
4199204 AAAATTATAATA
1 AAAATTATAATA
*
4199216 AAAATATAAAATA
1 AAAAT-TATAATA
*
4199229 AAACTT-TAATA
1 AAAATTATAATA
4199240 AAAATTGATAATA
1 AAAATT-ATAATA
4199253 AA
1 AA
4199255 TAATAATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
11 9 0.28
12 6 0.19
13 17 0.53
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (12 bp):
AAAATTATAATA
Found at i:4199915 original size:53 final size:53
Alignment explanation
Indices: 4199848--4199961 Score: 158
Period size: 53 Copynumber: 2.1 Consensus size: 53
4199838 TGATTTCTAA
* *
4199848 TAAAGATATTTCTAAATTTA-ACCCAAATGATGAAAAATTTAGAAATAAAATTTG
1 TAAA-ATATTTCT-AACTTAGACCCAAATGATGAAAAATTTAGAAATAAAACTTG
* * *
4199902 TAAAATATTTCTAACTTAGGCCCAAATGGTGAAAAATTTAGATATAAAACTTG
1 TAAAATATTTCTAACTTAGACCCAAATGATGAAAAATTTAGAAATAAAACTTG
4199955 TAAAATA
1 TAAAATA
4199962 AAAAAATAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
52 5 0.09
53 45 0.83
54 4 0.07
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.32
Consensus pattern (53 bp):
TAAAATATTTCTAACTTAGACCCAAATGATGAAAAATTTAGAAATAAAACTTG
Found at i:4200853 original size:50 final size:50
Alignment explanation
Indices: 4200783--4200884 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
4200773 ATTTTATCTC
* *
4200783 TATTTGAATATTCATTTTTTATTTGATACAAAATTTAGGAAAAAATATTT
1 TATTTGAATAGTCATTTTTTATTTGATACAAAATTTAAGAAAAAATATTT
4200833 TATTTGAATAGTCATTTTTTATTTGATACAAAATTTAAGAAAAAATATTT
1 TATTTGAATAGTCATTTTTTATTTGATACAAAATTTAAGAAAAAATATTT
4200883 TA
1 TA
4200885 ACTTTAGTGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (50 bp):
TATTTGAATAGTCATTTTTTATTTGATACAAAATTTAAGAAAAAATATTT
Found at i:4202004 original size:7 final size:7
Alignment explanation
Indices: 4201994--4202074 Score: 51
Period size: 7 Copynumber: 11.1 Consensus size: 7
4201984 TGTATCTTAG
4201994 TTATTTA
1 TTATTTA
4202001 TTATTTA
1 TTATTTA
4202008 TTTATTATTA
1 -TTA-T-TTA
*
4202018 CTATTTA
1 TTATTTA
*
4202025 TTAATATA
1 TT-ATTTA
* *
4202033 TATCTTTT
1 T-TATTTA
4202041 TTATTT-
1 TTATTTA
4202047 TTATTTTA
1 TTA-TTTA
4202055 TT-TTTA
1 TTATTTA
4202061 TT-TTTA
1 TTATTTA
4202067 TTATTTA
1 TTATTTA
4202074 T
1 T
4202075 CTGTTGATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
6 15 0.25
7 23 0.39
8 14 0.24
9 4 0.07
10 3 0.05
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:4202053 original size:5 final size:6
Alignment explanation
Indices: 4202038--4202074 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
4202028 ATATATATCT
4202038 TTTTTA TTTTTA -TTTTA TTTTTA TTTTTA TTATTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT-TTTA T
4202075 CTGTTGATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 5 0.17
6 19 0.66
7 5 0.17
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:4202999 original size:22 final size:21
Alignment explanation
Indices: 4202973--4203022 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
4202963 TATTTATTTG
*
4202973 TTTTATTATTATTATTATTAT
1 TTTTAATATTATTATTATTAT
* *
4202994 TGTTTAATATTTTTATTTTTAT
1 T-TTTAATATTATTATTATTAT
4203016 TTTTAAT
1 TTTTAAT
4203023 TTTTAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTAATATTATTATTATTAT
Found at i:4203009 original size:28 final size:27
Alignment explanation
Indices: 4202973--4203056 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 27
4202963 TATTTATTTG
4202973 TTTTATTATTATTATTATT-ATTGTTTAA
1 TTTT-TTATTATTATTATTAATT-TTTAA
* *
4203001 TATTTTTATTTTTATTTTTAATTTTTAA
1 T-TTTTTATTATTATTATTAATTTTTAA
4203029 TTTTTTA--ATT-TT-TTAATTTTTTAA
1 TTTTTTATTATTATTATTAA-TTTTTAA
4203053 TTTT
1 TTTT
4203057 ATTTTCATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
23 4 0.08
24 13 0.26
25 2 0.04
27 6 0.12
28 19 0.38
29 6 0.12
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (27 bp):
TTTTTTATTATTATTATTAATTTTTAA
Found at i:4203018 original size:5 final size:6
Alignment explanation
Indices: 4202973--4203096 Score: 74
Period size: 6 Copynumber: 19.5 Consensus size: 6
4202963 TATTTATTTG
* * * * *
4202973 TTTTAT TATTAT TATTAT TATTGT TTAATAT TTTTAT TTTTAT TTTTAAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT-TTAT TTTTAT TTTTAT TTTT-AT
* *
4203023 TTTTAATT TTTTAATT TTTTAATT TTTTAA TTTTAT TTTCAT TTTTA-
1 TTTT-A-T TTTT-A-T TTTT-A-T TTTTAT TTTTAT TTTTAT TTTTAT
4203070 TTTTA- TTTTAT TATTT-T ATTTTAT TTT
1 TTTTAT TTTTAT T-TTTAT -TTTTAT TTT
4203097 CTTTAAATAA
Statistics
Matches: 101, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
5 10 0.10
6 52 0.51
7 18 0.18
8 21 0.21
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:4203033 original size:8 final size:8
Alignment explanation
Indices: 4202996--4203056 Score: 78
Period size: 8 Copynumber: 8.1 Consensus size: 8
4202986 ATTATTATTG
4202996 TTTAATATT
1 TTTAAT-TT
4203005 TTT-A-TT
1 TTTAATTT
4203011 TTT-A-TT
1 TTTAATTT
4203017 TTTAA-TT
1 TTTAATTT
4203024 TTTAATTT
1 TTTAATTT
4203032 TTTAATTT
1 TTTAATTT
4203040 TTTAATTT
1 TTTAATTT
4203048 TTTAATTT
1 TTTAATTT
4203056 T
1 T
4203057 ATTTTCATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
6 11 0.22
7 8 0.16
8 28 0.56
9 3 0.06
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTAATTT
Found at i:4203163 original size:58 final size:58
Alignment explanation
Indices: 4203101--4203619 Score: 536
Period size: 58 Copynumber: 8.9 Consensus size: 58
4203091 TATTTTCTTT
* * * **
4203101 AAATAAAATTCAAAAAAAATATTTTTGAGAAAAAGTTGTAAGTATCAATTTCCCTTAA
1 AAATAAATTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGA
* * *
4203159 AAATAAAGTTT-TAAAAAAAT-GTTTTGAGGAAAAGTTGAAAGTATCAAATTTT-CTCGA
1 AAATAAA-TTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC-AATTTTCCTCGA
* ** **
4203216 AATTAAAGTTT-TGAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAA-TTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGA
* * * * * *
4203274 AAATCAATTTTCAAAAAAAAAAGTTTGGAGGAAAAGCTGAAAGTATCAATTTTCCTCG-
1 AAAT-AAATTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGA
* **
4203332 AAATCAAAGTTTC-CAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAAT-AAA-TTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGA
* *** * *
4203391 AAATAAGTTTTC-AAAAATGGATTCTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGA
1 AAATAA-ATTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGA
* * *
4203449 AATTAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGA
1 AAATAAA-TTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGA
* * *
4203508 AATTAAAGTTTC-AAAAAAATGTTTTTG-GAAAAAAGTTGAAAGTATCAATTTTTCTCGA
1 AAATAAA-TTTCAAAAAAAATATTTTTGAG-AAAAAGTTGAAAGTATCAATTTTCCTCGA
* *
4203566 AATTAAAGTTTCAAAAAAAATATTTTTGA-AGAAAAGTTGAAAATATCAATTTTC
1 AAATAAA-TTTCAAAAAAAATATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTC
4203620 TCTACATAAA
Statistics
Matches: 391, Mismatches: 55, Indels: 29
0.82 0.12 0.06
Matches are distributed among these distances:
57 50 0.13
58 204 0.52
59 137 0.35
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
AAATAAATTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGA
Found at i:4203341 original size:117 final size:118
Alignment explanation
Indices: 4203109--4203619 Score: 677
Period size: 117 Copynumber: 4.4 Consensus size: 118
4203099 TTAAATAAAA
* *
4203109 TTCAAAAAAAATATTTTTGAGAAAAAGTTGTAAGTATCAATTTCCCTTAAAAATAAAGTTTT--A
1 TTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTCAA
* *
4203172 AAAAAATGTTTTGAGGAAAAGTTGAAAGTATCAAATTTT-CTCGAAATTAAAGT
66 AAAAAAAGTTTGGAGGAAAAGTTGAAAGTATC-AATTTTCCTCGAAATTAAAGT
** *
4203225 TT-TGAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAA-TTTTCAA
1 TTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTC-A
* *
4203288 AAAAAAAAGTTTGGAGGAAAAGCTGAAAGTATCAATTTTCCTCGAAATCAAAGT
65 AAAAAAAAGTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGT
*
4203342 TTC-CAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAGTTTTCAA
1 TTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTCAA
*** *
4203405 AAATGGA-TTCTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGT
66 AAAAAAAGTT-TGGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGT
* * ** *
4203458 TTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG-TTTC-A
1 TTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTCAA
* * *
4203521 AAAAAATGTTTTTGGA-AAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGT
66 AAAAAAAG--TTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGT
*
4203575 TTCAAAAAAAATATTTTTGA-AGAAAAGTTGAAAATATCAATTTTC
1 TTCAAAAAAAATATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTC
4203620 TCTACATAAA
Statistics
Matches: 350, Mismatches: 32, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
114 4 0.01
115 51 0.15
116 63 0.18
117 224 0.64
118 6 0.02
119 2 0.01
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (118 bp):
TTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTCAA
AAAAAAAGTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGT
Found at i:4203435 original size:175 final size:172
Alignment explanation
Indices: 4203101--4203619 Score: 625
Period size: 175 Copynumber: 3.0 Consensus size: 172
4203091 TATTTTCTTT
* * * * **
4203101 AAATAAA-ATTCAAAAAAAATATTTTTGAGAAAAAGTTGTAAGTATCAATTTCCCTTAAAAATAA
1 AAATAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-TCGAAATAA
* * *
4203165 AGTTTTAAAAAAAT-GTTTTGAGGAAAAGTTGAAAGTATCAAATTTTCTCGAAATTAAAGTTTTG
65 AGTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC-AATTTTCTCGAAATTAAAGTTTT-
* * *
4203229 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAA
128 CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAA
* * * * * *
4203274 AAATCAATTTTCAAAAAAAAAAGTTTGGAGGAAAAGCTGAAAGTATCAATTTTCCTCGAAATCAA
1 AAATAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAT-AA
* ** *
4203339 AGTTTCCAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAGTTTTC
65 AGTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTT-CTCGAAATTAAAGTTTTC
* *
4203403 AAAAATGGATTCTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGA
129 AAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAA
* *
4203449 AATTAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAA
1 AAATAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAA-TAA
*
4203514 AGTTTCAAAAAAATGTTTTTG-GAAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG-TTT
65 AGTTTCAAAAAAATATTTTTGAG-AAAAAGTTGAAAGTATCAA-TTTTCTCGAAATTAAAGTTTT
* *
4203577 CAAAAAAAATATTTTTGAAGAAAAGTTGAAAATATCAATTTTC
128 C---AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
4203620 TCTACATAAA
Statistics
Matches: 294, Mismatches: 39, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
173 17 0.06
174 67 0.23
175 166 0.56
176 38 0.13
178 6 0.02
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (172 bp):
AAATAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATAAA
GTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTCGAAATTAAAGTTTTCAA
AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAA
Found at i:4204749 original size:21 final size:22
Alignment explanation
Indices: 4204727--4204772 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 22
4204717 CATATTAGAT
4204727 TTCATCCATGAAAATGTACATTTCA
1 TTCATCCATGAAAATGTACA--T-A
4204752 TTCATCCATGAAAATGTACAT
1 TTCATCCATGAAAATGTACAT
4204773 CAACGTCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 1 0.05
25 20 0.95
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.35
Consensus pattern (22 bp):
TTCATCCATGAAAATGTACATA
Found at i:4209558 original size:41 final size:41
Alignment explanation
Indices: 4209500--4209642 Score: 182
Period size: 42 Copynumber: 3.4 Consensus size: 41
4209490 GTCAATGAGT
* *
4209500 AATTTATTTTTCCAAAGTTTCATTGCCTCTGTTTAGAGGAGC
1 AATTTACTTTT-CAAAGTTTCGTTGCCTCTGTTTAGAGGAGC
*
4209542 ATTTTACTTTTCAAAG--TCGTGGTGCCTCTGTTTAGAGGAGC
1 AATTTACTTTTCAAAGTTTCGT--TGCCTCTGTTTAGAGGAGC
* * *
4209583 AATTTATTTTTCAAAGTTATGGTTGCCTCTATTTAGAGGAGC
1 AATTTACTTTTCAAAGTT-TCGTTGCCTCTGTTTAGAGGAGC
4209625 AATTTACTTTTCAAAGTT
1 AATTTACTTTTCAAAGTT
4209643 ATGGTGCCTC
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 3 0.03
41 38 0.43
42 44 0.50
44 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (41 bp):
AATTTACTTTTCAAAGTTTCGTTGCCTCTGTTTAGAGGAGC
Found at i:4209623 original size:42 final size:41
Alignment explanation
Indices: 4209523--4209654 Score: 210
Period size: 41 Copynumber: 3.2 Consensus size: 41
4209513 AAAGTTTCAT
* **
4209523 TGCCTCTGTTTAGAGGAGCATTTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTATGG
*
4209564 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTATGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTATGG
*
4209605 TTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTTATGG
1 -TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTATGG
4209647 TGCCTCTG
1 TGCCTCTG
4209655 CTTAAAGAGG
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 44 0.53
42 39 0.47
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (41 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTATGG
Found at i:4209639 original size:83 final size:83
Alignment explanation
Indices: 4209500--4209654 Score: 240
Period size: 83 Copynumber: 1.9 Consensus size: 83
4209490 GTCAATGAGT
* * *
4209500 AATTTATTTTTCCAAAGTTTCATTGCCTCTGTTTAGAGGAGCATTTTACTTTTCAAAGTCGTGGT
1 AATTTATTTTTCCAAAGTTTCATTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTCATGGT
4209565 GCCTCTGTTTAGAGGAGC
66 GCCTCTGTTTAGAGGAGC
** *
4209583 AATTTATTTTT-CAAAGTTATGGTTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTTATGG
1 AATTTATTTTTCCAAAGTT-TCATTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTCATGG
4209647 TGCCTCTG
65 TGCCTCTG
4209655 CTTAAAGAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
82 7 0.11
83 58 0.89
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.42
Consensus pattern (83 bp):
AATTTATTTTTCCAAAGTTTCATTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTCATGGT
GCCTCTGTTTAGAGGAGC
Found at i:4209668 original size:18 final size:18
Alignment explanation
Indices: 4209645--4209680 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
4209635 TCAAAGTTAT
4209645 GGTGCCTCTGCTTAAAGA
1 GGTGCCTCTGCTTAAAGA
4209663 GGTGCCTCTGCTTAAAGA
1 GGTGCCTCTGCTTAAAGA
4209681 AGTATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (18 bp):
GGTGCCTCTGCTTAAAGA
Found at i:4209712 original size:39 final size:40
Alignment explanation
Indices: 4209663--4209739 Score: 113
Period size: 39 Copynumber: 1.9 Consensus size: 40
4209653 TGCTTAAAGA
4209663 GGTGCCTCTGCTTAAAGAAG-TATTTATTTTT-AAAGTCAT
1 GGTGCCTCTGCTTAAAG-AGCTATTTATTTTTCAAAGTCAT
* *
4209702 GGTGCTTCTGCTTAGAGAGCTATTTATTTTTCAAAGTC
1 GGTGCCTCTGCTTAAAGAGCTATTTATTTTTCAAAGTC
4209740 GTTGAGCCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 2 0.06
39 26 0.76
40 6 0.18
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (40 bp):
GGTGCCTCTGCTTAAAGAGCTATTTATTTTTCAAAGTCAT
Found at i:4209788 original size:41 final size:41
Alignment explanation
Indices: 4209708--4209928 Score: 259
Period size: 41 Copynumber: 5.3 Consensus size: 41
4209698 TCATGGTGCT
* * *
4209708 TCTGCTTAGA-GAGCTATTTATTTTTC-AAAGTCGTTGAGCC
1 TCTGATTAGAGGAGCCATTTA-TTTTCAAAAGTCGTAGAGCC
* * *
4209748 TCTAATTAGAGGAGCCATTTATTTTCAAAAATTGTAGAGCC
1 TCTGATTAGAGGAGCCATTTATTTTCAAAAGTCGTAGAGCC
* *
4209789 TCTGATTAAAGGAGCCTTTTATTTTTCAAAAGTCGTTA-AGCC
1 TCTGATTAGAGGAGCCATTTA-TTTTCAAAAGTCG-TAGAGCC
* * *
4209831 TGTGATTAGAAGAGCCATTTATTTTCAAAAGTCGTAAAGCC
1 TCTGATTAGAGGAGCCATTTATTTTCAAAAGTCGTAGAGCC
* *
4209872 TCTGATTAGAGAAGCCATTTATTTTCCAAAAAGTCGTTGAGCC
1 TCTGATTAGAGGAGCCATTTATTTT-C-AAAAGTCGTAGAGCC
4209915 TCTGATTAGAGGAG
1 TCTGATTAGAGGAG
4209929 TTTTGTTTAT
Statistics
Matches: 153, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
40 15 0.10
41 77 0.50
42 33 0.22
43 28 0.18
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (41 bp):
TCTGATTAGAGGAGCCATTTATTTTCAAAAGTCGTAGAGCC
Found at i:4209831 original size:83 final size:83
Alignment explanation
Indices: 4209723--4209928 Score: 297
Period size: 83 Copynumber: 2.5 Consensus size: 83
4209713 TTAGAGAGCT
* * *
4209723 ATTTATTTTTC-AAAGTCGTTGAGCCTCTAATTAGAGGAGCCATTTATTTTCAAAAATTGTAGAG
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTCAAAAATCGTAAAG
*
4209787 CCTCTGATTAAAGGAGCC
66 CCTCTGATTAAAGAAGCC
* * * * *
4209805 TTTTATTTTTCAAAAGTCGTTAAGCCTGTGATTAGAAGAGCCATTTATTTTCAAAAGTCGTAAAG
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTCAAAAATCGTAAAG
*
4209870 CCTCTGATTAGAGAAGCC
66 CCTCTGATTAAAGAAGCC
*
4209888 ATTTATTTTCCAAAAAGTCGTTGAGCCTCTGATTAGAGGAG
1 ATTTATTTTTC-AAAAGTCGTTGAGCCTCTGATTAGAGGAG
4209929 TTTTGTTTAT
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
82 10 0.09
83 71 0.66
84 26 0.24
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (83 bp):
ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTCAAAAATCGTAAAG
CCTCTGATTAAAGAAGCC
Found at i:4209964 original size:47 final size:47
Alignment explanation
Indices: 4209888--4210024 Score: 165
Period size: 47 Copynumber: 2.9 Consensus size: 47
4209878 TAGAGAAGCC
*
4209888 ATTTATTTTCCAAAAAGTCGTTGAGCCTCTGATTAGAGGAGTTTTGTTT
1 ATTTA-TTTCC-AAAAGTCGTTGAACCTCTGATTAGAGGAGTTTTGTTT
*
4209937 ATTTATTTCCAAAAGTCGTTGAACCTCTTATTAGAGGAGTTTTGTTT
1 ATTTATTTCCAAAAGTCGTTGAACCTCTGATTAGAGGAGTTTTGTTT
* * *
4209984 ATGTT-CTT-C-AAAGTCGTT-AAGCCTCTGCTTATAGGAGTTTT
1 AT-TTATTTCCAAAAGTCGTTGAA-CCTCTGATTAGAGGAGTTTT
4210025 AATCAAATTT
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
44 2 0.03
45 26 0.32
46 1 0.01
47 39 0.49
48 7 0.09
49 5 0.06
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.43
Consensus pattern (47 bp):
ATTTATTTCCAAAAGTCGTTGAACCTCTGATTAGAGGAGTTTTGTTT
Found at i:4210304 original size:5 final size:5
Alignment explanation
Indices: 4210294--4210319 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
4210284 TATATATATA
4210294 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
4210320 ATTTATTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:4210364 original size:20 final size:20
Alignment explanation
Indices: 4210339--4210397 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
4210329 TTGATATACA
*
4210339 TATTATTATTTATCTAT-TAT
1 TATTATTA-TTATTTATCTAT
4210359 TATTATTATTATTTATCTAT
1 TATTATTATTATTTATCTAT
*
4210379 TAATAGTT-TTATTTATCTA
1 TATTA-TTATTATTTATCTA
4210398 ATTTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.20
20 26 0.74
21 2 0.06
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (20 bp):
TATTATTATTATTTATCTAT
Found at i:4210365 original size:23 final size:23
Alignment explanation
Indices: 4210247--4210380 Score: 91
Period size: 23 Copynumber: 5.7 Consensus size: 23
4210237 TCTTAGTTAT
* *
4210247 TTATTATTTATTTATTATTACTA
1 TTATTATTTATCTATTATTATTA
* *
4210270 TCTATTAATATATATATATATATATTTA
1 T-TATT-ATTTATCTAT-TAT-TA-TTA
4210298 TT-TTA-TT-T-TATT-TTATT-
1 TTATTATTTATCTATTATTATTA
* * *
4210315 TTATTATTTATTTGTTGATATACATA
1 TTATTATTTATCTATT-AT-TA-TTA
4210341 TTATTATTTATCTATTATTATTA
1 TTATTATTTATCTATTATTATTA
4210364 TTATTATTTATCTATTA
1 TTATTATTTATCTATTA
4210381 ATAGTTTTAT
Statistics
Matches: 88, Mismatches: 9, Indels: 28
0.70 0.07 0.22
Matches are distributed among these distances:
17 2 0.02
18 5 0.06
19 4 0.05
20 2 0.02
21 4 0.05
22 3 0.03
23 22 0.25
24 9 0.10
25 12 0.14
26 19 0.22
27 3 0.03
28 3 0.03
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (23 bp):
TTATTATTTATCTATTATTATTA
Found at i:4210374 original size:10 final size:10
Alignment explanation
Indices: 4210243--4210380 Score: 73
Period size: 11 Copynumber: 12.3 Consensus size: 10
4210233 TTTATCTTAG
4210243 TTATTTATTA
1 TTATTTATTA
4210253 TTTATTTATTA
1 -TTATTTATTA
4210264 TTACTATCTATTAA
1 TTA-T-T-TATT-A
*
4210278 TATATATATATA
1 T-TATTTAT-TA
4210290 TATATTTATT-
1 T-TATTTATTA
4210300 TTATTTTATT-
1 TTA-TTTATTA
4210310 TTATTTTATTA
1 TTA-TTTATTA
*
4210321 TTTATTTGTTGA
1 -TTATTTATT-A
**
4210333 TATACATATTA
1 T-TATTTATTA
4210344 TTATTTATCTA
1 TTATTTAT-TA
4210355 TTATTATTATTA
1 TTA-T-TTATTA
4210367 TTATTTATCTA
1 TTATTTAT-TA
4210378 TTA
1 TTA
4210381 ATAGTTTTAT
Statistics
Matches: 104, Mismatches: 8, Indels: 30
0.73 0.06 0.21
Matches are distributed among these distances:
9 2 0.02
10 29 0.28
11 31 0.30
12 28 0.27
13 9 0.09
14 3 0.03
15 2 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (10 bp):
TTATTTATTA
Found at i:4210390 original size:23 final size:23
Alignment explanation
Indices: 4210339--4210391 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
4210329 TTGATATACA
*
4210339 TATTATTATTTATCTATTATTAT
1 TATTATTATTTATCTATTAATAT
4210362 TATTATTATTTATCTATTAATAGT
1 TATTATTATTTATCTATTAATA-T
4210386 T-TTATT
1 TATTATT
4210392 TATCTAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
23 26 0.93
24 2 0.07
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (23 bp):
TATTATTATTTATCTATTAATAT
Found at i:4210989 original size:19 final size:16
Alignment explanation
Indices: 4210965--4211003 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 16
4210955 TTTTAGAGAG
4210965 AGAGAGAGAAGAAGAAAGA
1 AGAGAGAG-AGAA-AAA-A
4210984 AGAGAGAGAGAAAAAA
1 AGAGAGAGAGAAAAAA
4211000 AGAG
1 AGAG
4211004 GGTTCTGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 5 0.25
17 3 0.15
18 4 0.20
19 8 0.40
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (16 bp):
AGAGAGAGAGAAAAAA
Found at i:4211289 original size:21 final size:20
Alignment explanation
Indices: 4211269--4211339 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 20
4211259 TTTTATTTAT
4211269 TTATTTATTTATTATTATTA
1 TTATTTATTTATTATTATTA
* *
4211289 TTATGATTGTTTAATATT-TTA
1 TTAT--TTATTTATTATTATTA
*
4211310 TT-TTTATTT-TTATTTATTT
1 TTATTTATTTATTA-TTATTA
4211329 TTATTTTATTT
1 TTA-TTTATTT
4211340 TCATTTTCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
17 2 0.05
18 7 0.17
19 4 0.10
20 5 0.12
21 12 0.30
22 10 0.25
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (20 bp):
TTATTTATTTATTATTATTA
Found at i:4211333 original size:27 final size:28
Alignment explanation
Indices: 4211259--4211379 Score: 90
Period size: 30 Copynumber: 4.3 Consensus size: 28
4211249 TTTTAATTTG
*
4211259 TTTTATTTATTTATT-TATTTATTATTAT
1 TTTTATTTATTTATTAT-TTTATTTTTAT
* * *
4211287 TATTATGATTGTTTAATATTTTATTTTTAT
1 TTTTAT--TTATTTATTATTTTATTTTTAT
*
4211317 TTTTATTTATTT-TTATTTTATTTTCAT
1 TTTTATTTATTTATTATTTTATTTTTAT
* *
4211344 TTTCAATTTTAATTTATT-TTTT-TTATTA-
1 TTT-TA-TTT-ATTTATTATTTTATTTTTAT
4211372 TTTTATTT
1 TTTTATTT
4211380 TCTTTAAATA
Statistics
Matches: 74, Mismatches: 12, Indels: 16
0.73 0.12 0.16
Matches are distributed among these distances:
26 3 0.04
27 17 0.23
28 14 0.19
29 7 0.09
30 30 0.41
31 3 0.04
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.74
Consensus pattern (28 bp):
TTTTATTTATTTATTATTTTATTTTTAT
Found at i:4211345 original size:6 final size:5
Alignment explanation
Indices: 4211303--4211380 Score: 65
Period size: 5 Copynumber: 15.2 Consensus size: 5
4211293 GATTGTTTAA
4211303 TATTT TATTTT TATTT T-TATT TATTTT TATTT TATTT TCATTT TCAATTT
1 TATTT TA-TTT TATTT TAT-TT TA-TTT TATTT TATTT T-ATTT T--ATTT
*
4211353 TAATT TATTT T-TTT TA--T TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT TATTT T
4211381 CTTTAAATAA
Statistics
Matches: 61, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
3 3 0.05
4 5 0.08
5 33 0.54
6 14 0.23
7 6 0.10
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:4211372 original size:12 final size:13
Alignment explanation
Indices: 4211259--4211380 Score: 52
Period size: 12 Copynumber: 9.7 Consensus size: 13
4211249 TTTTAATTTG
4211259 TTTTA-TTTATT-
1 TTTTATTTTATTA
4211270 TATTTA-TTTATTA
1 T-TTTATTTTATTA
* *
4211283 TTATTATTATGATTG
1 TT-TTATT-TTATTA
4211298 TTTAATATTTTA-T-
1 TTT--TATTTTATTA
4211311 TTTTA-TTT-TTA
1 TTTTATTTTATTA
4211322 -TTTA-TTT-TTA
1 TTTTATTTTATTA
4211332 TTTTATTTTCATT-
1 TTTTATTTT-ATTA
**
4211345 TTCAATTTTAATTTA
1 TTTTATTTT-A-TTA
4211360 TTTT-TTTTATTA
1 TTTTATTTTATTA
4211372 TTTTATTTT
1 TTTTATTTT
4211381 CTTTAAATAA
Statistics
Matches: 87, Mismatches: 8, Indels: 30
0.70 0.06 0.24
Matches are distributed among these distances:
10 14 0.16
11 7 0.08
12 21 0.24
13 20 0.23
14 11 0.13
15 10 0.11
16 4 0.05
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:4211608 original size:58 final size:57
Alignment explanation
Indices: 4211398--4211784 Score: 367
Period size: 58 Copynumber: 6.7 Consensus size: 57
4211388 TAAAATTCAA
* * * ** *
4211398 AAAAAATATTTTTGAGGAAAAGTTGTAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
1 AAAAAATATTTTTGA-AAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTC
* * ***
4211455 AAAAAA-AGGTTTTGAGAAAAA-TTGAAAGTATCAATTTTCCTCGAAATTAAAATTCAA
1 AAAAAATA-TTTTTGA-AAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTC
* *
4211512 AAAAATATATTTTTAAAGAAAAGTTGAAAGTATCAATTTTTCTCGTAATTAAAATTTTC
1 AAAAA-ATATTTTTGAA-AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTC
* ** * *
4211571 AAAAAATATTTTTGGAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAGTTTTC
1 AAAAAATATTTTT-GAAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTC
* *
4211628 -AAAAATGGATTCTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGAAATT-AAAGTTTC
1 AAAAAAT--ATTTTTGAA-AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTC
* * * *
4211686 AAAAAA-ATGGTTTTGGAAAAAGTTGAAAGTATTAATTTTTCTTGAAATT-AAAGTTTC
1 AAAAAATAT--TTTTGAAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTC
*
4211743 AAAAAAAATATTTTTGGAAAAAAGTTGAAATTATCAATTTTT
1 --AAAAAATATTTTT-GAAAAAAGTTGAAAGTATCAATTTTT
4211785 TTTGCACAAA
Statistics
Matches: 276, Mismatches: 37, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
56 32 0.12
57 76 0.28
58 93 0.34
59 73 0.26
60 2 0.01
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (57 bp):
AAAAAATATTTTTGAAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTC
Found at i:4211647 original size:116 final size:115
Alignment explanation
Indices: 4211393--4211784 Score: 440
Period size: 116 Copynumber: 3.4 Consensus size: 115
4211383 TTAAATAAAA
* * * * **
4211393 TTCAAAAAAAATATTTTTGAGGAAAAGTTGTAAGTATCAA-TTTTC-CTTAAAAATAAATTTTCA
1 TTCAAAAAATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGTAATTA-AAATTTTCA
* * **
4211456 AAAAAAGGTTTT-GAGAAAAA-TTGAAAGTATCAATTTTCCTCGAAATTAAAA
65 AAAAAA-TTTTTGGA-AAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAGT
*
4211507 TTCAAAAAAATATATTTTTAAAGAAAAGTTGAAAGTATCAATTTTTCTCGTAATTAAAATTTTCA
1 TTC-AAAAAATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGTAATTAAAATTTTCA
* *
4211572 AAAAATATTTTTGGAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTT
65 AAAAA-ATTTTTGGAAAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAG-T
** * * *
4211625 TTC-AAAAATGGATTCTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGAAATT-AAAGTTTCAA
1 TTCAAAAAATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGTAATTAAAATTTTCAA
* *
4211688 AAAAATGGTTTTGG-AAAAAGTTGAAAGTATTAATTTTTCTTGAAATTAAAGT
66 AAAAAT--TTTTGGAAAAAAGTTGAAAGTATCAATTTTCCTTGAAATT-AAGT
* *
4211740 TTCAAAAAAAATATTTTTGGAA-AAAAGTTGAAATTATCAATTTTT
1 TTCAAAAAATATATTTTT-GAAGAAAAGTTGAAAGTATCAATTTTT
4211785 TTTGCACAAA
Statistics
Matches: 238, Mismatches: 28, Indels: 22
0.83 0.10 0.08
Matches are distributed among these distances:
114 5 0.02
115 79 0.33
116 114 0.48
117 37 0.16
118 3 0.01
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.37
Consensus pattern (115 bp):
TTCAAAAAATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGTAATTAAAATTTTCAA
AAAAATTTTTGGAAAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAGT
Found at i:4214029 original size:11 final size:11
Alignment explanation
Indices: 4214015--4214048 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
4214005 AGAGAGAGAG
4214015 AAGAGAATAAA
1 AAGAGAATAAA
* *
4214026 AAGAAAAAAAA
1 AAGAGAATAAA
4214037 AAGAGAATAAA
1 AAGAGAATAAA
4214048 A
1 A
4214049 TTTTATCTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (11 bp):
AAGAGAATAAA
Found at i:4214306 original size:2 final size:2
Alignment explanation
Indices: 4214299--4214328 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
4214289 AGTTGAAAAC
*
4214299 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4214329 GCGCATGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4215606 original size:15 final size:16
Alignment explanation
Indices: 4215574--4215607 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4215564 ATCAATTCAA
*
4215574 AAAATTAATTATAATC
1 AAAATTAAATATAATC
4215590 AAAATTAAATA-AATC
1 AAAATTAAATATAATC
4215605 AAA
1 AAA
4215608 TCAAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATTAAATATAATC
Found at i:4226350 original size:29 final size:31
Alignment explanation
Indices: 4226308--4226384 Score: 106
Period size: 29 Copynumber: 2.5 Consensus size: 31
4226298 TATAATAAAA
*
4226308 TATTTATATGATATTTAAATT-TAAAAT-TTT
1 TATTAATATGATATTTAAATTAT-AAATCTTT
4226338 T-TTAATATGATATTTAAATTATAAATCTTT
1 TATTAATATGATATTTAAATTATAAATCTTT
4226368 TAATTAATATGATATTT
1 T-ATTAATATGATATTT
4226385 GAAAAATTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
29 22 0.52
30 6 0.14
32 14 0.33
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (31 bp):
TATTAATATGATATTTAAATTATAAATCTTT
Found at i:4226461 original size:32 final size:29
Alignment explanation
Indices: 4226425--4226501 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
4226415 AAATTAAAAG
* *
4226425 TAAATATCATTTTAATTAATAAATTTATAATT
1 TAAATATCATATTAA--AA-AAATTTAAAATT
*
4226457 TAAATATCATATTAAAAAATTTTAAAATT
1 TAAATATCATATTAAAAAAATTTAAAATT
4226486 TAAATAAT-ATATTAAA
1 TAAAT-ATCATATTAAA
4226502 TATTTCATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
29 23 0.56
30 4 0.10
32 14 0.34
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (29 bp):
TAAATATCATATTAAAAAAATTTAAAATT
Found at i:4226471 original size:28 final size:29
Alignment explanation
Indices: 4226439--4226501 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
4226429 TATCATTTTA
* *
4226439 ATTAATAAA-TTTATAATTTAAAT-ATCAT
1 ATTAAAAAATTTTAAAATTTAAATAAT-AT
4226467 ATTAAAAAATTTTAAAATTTAAATAATAT
1 ATTAAAAAATTTTAAAATTTAAATAATAT
4226496 ATTAAA
1 ATTAAA
4226502 TATTTCATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 8 0.26
29 21 0.68
30 2 0.06
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (29 bp):
ATTAAAAAATTTTAAAATTTAAATAATAT
Found at i:4233615 original size:55 final size:53
Alignment explanation
Indices: 4233517--4233725 Score: 179
Period size: 55 Copynumber: 3.8 Consensus size: 53
4233507 CATTTTAACG
* * * *
4233517 AAATTATTTTTTGTTTTAAGGAAAAATTAATACTTTT-ATTTTTTTTTTCAAAATTTG
1 AAATTA-TTTTT-ATTTAA-GAAAAATTAATA-TTTTAACTTTTTTTTT-AAATTTTA
* * *
4233574 AAATTATTTTCATTTAAAGAAAAATTGATATTTCAACTTTTTTTTTAAATTTTAA
1 AAATTATTTTTATTT-AAGAAAAATTAATATTTTAACTTTTTTTTTAAATTTT-A
* * * * *
4233629 AAATT-TTTTTATTCTAAGGAAAATTTATTATTTTAACTTTTTTCTTACATTTTTT
1 AAATTATTTTTATT-TAA-GAAAAATTAATATTTTAACTTTTTTTTTA-AATTTTA
* *
4233684 AAATCATTTTTGTTTTAAGAAAAATTAATATTTTAACTTTTT
1 AAATTATTTTT-ATTTAAGAAAAATTAATATTTTAACTTTTT
4233726 CCTTGAATTT
Statistics
Matches: 125, Mismatches: 19, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
54 18 0.14
55 80 0.64
56 19 0.15
57 8 0.06
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (53 bp):
AAATTATTTTTATTTAAGAAAAATTAATATTTTAACTTTTTTTTTAAATTTTA
Found at i:4235132 original size:11 final size:12
Alignment explanation
Indices: 4235116--4235178 Score: 58
Period size: 12 Copynumber: 5.1 Consensus size: 12
4235106 TTTATATAAA
4235116 AATTAATT-TTT
1 AATTAATTATTT
4235127 AATTAATTATTT
1 AATTAATTATTT
4235139 AATTTATATATATTT
1 AA-TTA-AT-TATTT
*
4235154 -ATATAATTATAT
1 AAT-TAATTATTT
*
4235166 AATTAAATATTT
1 AATTAATTATTT
4235178 A
1 A
4235179 CATTTAAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
11 8 0.19
12 17 0.40
13 8 0.19
14 5 0.12
15 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATTAATTATTT
Found at i:4235231 original size:24 final size:24
Alignment explanation
Indices: 4235181--4235232 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
4235171 AATATTTACA
*
4235181 TTTAAAAAATAATATTTTTATATT
1 TTTAAAAAATAATATTTTTATAAT
4235205 TTTAAAAAATAATA-TTTTATTAAT
1 TTTAAAAAATAATATTTTTA-TAAT
4235229 TTTA
1 TTTA
4235233 GATTAGGTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTAAAAAATAATATTTTTATAAT
Found at i:4238569 original size:43 final size:43
Alignment explanation
Indices: 4238508--4238616 Score: 175
Period size: 43 Copynumber: 2.5 Consensus size: 43
4238498 CCAATCATGG
*
4238508 CCCTATACATGAG-TGGCTCATGATAACCTATACCAAGTCATAA
1 CCCTATACAAG-GTTGGCTCATGATAACCTATACCAAGTCATAA
* *
4238551 CCCTATACAAGGTTGGCTCATGATAACCTATACCCAGTCATGA
1 CCCTATACAAGGTTGGCTCATGATAACCTATACCAAGTCATAA
4238594 CCCTATACAAGGTTGGCTCATGA
1 CCCTATACAAGGTTGGCTCATGA
4238617 CATCCTCCAT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
42 1 0.02
43 61 0.98
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
CCCTATACAAGGTTGGCTCATGATAACCTATACCAAGTCATAA
Found at i:4247976 original size:55 final size:53
Alignment explanation
Indices: 4247909--4248136 Score: 165
Period size: 55 Copynumber: 4.1 Consensus size: 53
4247899 ATCGTTTGTA
* * *
4247909 AAGGAAAATTGATATTTTTATTTTTTTTCATATATTTTAAATTATTTTCATTTT
1 AAGGAAAATTGATATTTTAATTTTTTTTCA-AAATTTGAAATTATTTTCATTTT
*
4247963 AAGGAAAAATTGATATTTTAATTTTTTTTCAAAATTTGAAATTATTTT-TTGCTTT
1 AAGG-AAAATTGATATTTTAATTTTTTTTCAAAATTTGAAATTATTTTCAT--TTT
* * * ** ** *
4248018 AAGGAAAACTTGTTACTTCAACTTTTTTCCCAATTTTTGAAATTATTTT-GTGTTT
1 AAGGAAAA-TTGATATTTTAA-TTTTTTTTCAAAATTTGAAATTATTTTCAT-TTT
* * * * * *
4248073 GATGAAAAATTTTATATTTCAACTTTTTTTCAAAAACTTT-AAATTTGTTTTCATTTT
1 -AAGGAAAA-TTGATATTTTAATTTTTTTTC-AAAA-TTTGAAA-TTATTTTCATTTT
4248130 AAGGAAA
1 AAGGAAA
4248137 TTATTTTTCA
Statistics
Matches: 136, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
53 1 0.01
54 23 0.17
55 50 0.37
56 49 0.36
57 12 0.09
58 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.08, T:0.52
Consensus pattern (53 bp):
AAGGAAAATTGATATTTTAATTTTTTTTCAAAATTTGAAATTATTTTCATTTT
Found at i:4248227 original size:187 final size:186
Alignment explanation
Indices: 4247947--4248287 Score: 447
Period size: 187 Copynumber: 1.8 Consensus size: 186
4247937 CATATATTTT
* *
4247947 AAATTATTTTCATTTTAAGGAAAAATTGATATTTTAATTTTTTTTCAAAATTTGAAATTATTTTT
1 AAATTATTTTCATTTTAAGGAAAAATTAATATTTTAATTTTTCTTCAAAATTTGAAATTA-TTTT
* * * * * * * *
4248012 TGCTTTAAGGAAAACTTGTTACTTCAACTTTTTTCCCAATTTTTGAAATTATTTTGTGTT-TGAT
65 TGCTTTAAAGAAAAATTGATACTTCAACTTTTTTCCCAAATTTTAAAATTATTTTGTATTCTAAG
4248076 GAAAAATT-TTATATTTCAACTTTTTTTCAAAAACTTTAAATTTGTTTTCATTTTAAGG
130 GAAAAATTATTAT-TTT-AACTTTTTTTCAAAAACTTTAAATTTGTTTTCATTTTAAGG
**
4248134 AAATTATTTTTCATTTTAAGGAAAAATTAATACTTTTGCTTTTTCTTCAAAATTTGAAATTA-TT
1 AAATTA-TTTTCATTTTAAGGAAAAATTAATA-TTTTAATTTTTCTTCAAAATTTGAAATTATTT
** ** *
4248198 TT-CATTTAAAGAAAAATTGATGTTTCAACTTTTTTCTTAAATTTTAAAATTATTTTTTATTCTA
64 TTGC-TTTAAAGAAAAATTGATACTTCAACTTTTTTCCCAAATTTTAAAATTATTTTGTATTCTA
4248262 AGGAAAAATTATTATTTTAACTTTTT
128 AGGAAAAATTATTATTTTAACTTTTT
4248288 CCTTACATTT
Statistics
Matches: 132, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
186 1 0.01
187 64 0.48
188 37 0.28
189 30 0.23
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (186 bp):
AAATTATTTTCATTTTAAGGAAAAATTAATATTTTAATTTTTCTTCAAAATTTGAAATTATTTTT
GCTTTAAAGAAAAATTGATACTTCAACTTTTTTCCCAAATTTTAAAATTATTTTGTATTCTAAGG
AAAAATTATTATTTTAACTTTTTTTCAAAAACTTTAAATTTGTTTTCATTTTAAGG
Found at i:4248285 original size:56 final size:55
Alignment explanation
Indices: 4248134--4248342 Score: 201
Period size: 55 Copynumber: 3.8 Consensus size: 55
4248124 CATTTTAAGG
* * *
4248134 AAATTATTTTTCATTTTAAGGAAAAATTAATACTTTT-GC-TTTTTCTTCAAAATTTG
1 AAATTATTTTTCA-TTTAAGGAAAAATTAATA-TTTTAACTTTTTTCTT-AAATTTTA
* * * *
4248190 AAATTA-TTTTCATTTAAAGAAAAATTGATGTTTCAACTTTTTTCTTAAATTTTA
1 AAATTATTTTTCATTTAAGGAAAAATTAATATTTTAACTTTTTTCTTAAATTTTA
* * * * *
4248244 AAATTATTTTTTATTCTAAGGAAAAATTATTATTTTAACTTTTTCCTTACATTTTTT
1 AAATTATTTTTCATT-TAAGGAAAAATTAATATTTTAACTTTTTTCTTA-AATTTTA
* * * *
4248301 AAATCATTCTTCTTTTAA-AAAAAATTAATATTTTAACTTTTT
1 AAATTATTTTTCATTTAAGGAAAAATTAATATTTTAACTTTTT
4248343 CTTTGATTTT
Statistics
Matches: 126, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
53 3 0.02
54 28 0.22
55 43 0.34
56 36 0.29
57 16 0.13
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (55 bp):
AAATTATTTTTCATTTAAGGAAAAATTAATATTTTAACTTTTTTCTTAAATTTTA
Found at i:4248352 original size:110 final size:110
Alignment explanation
Indices: 4248134--4248342 Score: 253
Period size: 110 Copynumber: 1.9 Consensus size: 110
4248124 CATTTTAAGG
* * *
4248134 AAATTATTTTTCATTTTAAGGAAAAATTAATACTTTTGCTTTTTCTTCAAAATTTGAAATTATTT
1 AAATTATTTTTCATTCTAAGGAAAAATTAATACTTTTACTTTTTCTTCAAAATTTGAAATCATTT
* *
4248199 TCATTTAAAGAAAAATTGATGTTTCAACTTTTTTCTTAAATTTTA
66 TCATTTAAAGAAAAATTAATATTTCAACTTTTTTCTTAAATTTTA
* * ** *
4248244 AAATTATTTTTTATTCTAAGGAAAAATTATTA-TTTTAACTTTTTCCTT-ACATTTTTTAAATCA
1 AAATTATTTTTCATTCTAAGGAAAAATTAATACTTTT-ACTTTTT-CTTCA-AAATTTGAAATCA
* *
4248307 TTCTTCTTTTAAA-AAAAATTAATATTTTAACTTTTT
63 TT-TTCATTTAAAGAAAAATTAATATTTCAACTTTTT
4248343 CTTTGATTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
109 4 0.05
110 36 0.43
111 34 0.41
112 9 0.11
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (110 bp):
AAATTATTTTTCATTCTAAGGAAAAATTAATACTTTTACTTTTTCTTCAAAATTTGAAATCATTT
TCATTTAAAGAAAAATTAATATTTCAACTTTTTTCTTAAATTTTA
Found at i:4248815 original size:19 final size:20
Alignment explanation
Indices: 4248774--4248815 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
4248764 ATTTACATCA
* **
4248774 AAATTGGAAAATGGTGCCTG
1 AAATTGAAAAATAATGCCTG
4248794 AAATTGAAAAATAATGCC-G
1 AAATTGAAAAATAATGCCTG
4248813 AAA
1 AAA
4248816 ACTTCAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (20 bp):
AAATTGAAAAATAATGCCTG
Found at i:4255005 original size:26 final size:25
Alignment explanation
Indices: 4254969--4255032 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 25
4254959 TTGGGATAAA
*
4254969 TTTAAAAAAATTTCTCACATAGAAAT
1 TTTATAAAAATTTCTCA-ATAGAAAT
* * *
4254995 TTTATAAAAATTTATCATTTGAAAT
1 TTTATAAAAATTTCTCAATAGAAAT
4255020 TTT-TAAAAATTTC
1 TTTATAAAAATTTC
4255033 ATCATTGGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 9 0.27
25 9 0.27
26 15 0.45
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (25 bp):
TTTATAAAAATTTCTCAATAGAAAT
Found at i:4255018 original size:193 final size:194
Alignment explanation
Indices: 4254685--4255043 Score: 458
Period size: 193 Copynumber: 1.8 Consensus size: 194
4254675 AGAAATTCTC
* *
4254685 TTTATTTTTTTTCTTTTTTTGGAAGAAAAATAATATGACAATTATTTTTTTATTGAAATTTCATT
1 TTTATTTTTTTTCTTTTTTTGGAAGAAAAATAATAT-ACAATTA-TTTGTTATTGAAATTTCATC
* * * *
4254750 TAAATTCTTCCACCATTTGAAACAAATTTAAAGAAATTTCTCAACTAGAGATTTATTAAGAATTT
64 TAAATTATTCCACCATTTGAAACAAATTTAAAAAAATTTCTCAACTAGAAATTTATTAAAAATTT
4254815 ACCATTTGAAATTTCTAAAAAATCTCATCATTGGATAGTTGTCAAATATTTTCAACCAAAATTTT
129 ACCATTTGAAATTT-TAAAAAATCTCATCATTGGATAGTTGTCAAATATTTTCAACCAAAATTTT
4254880 AT
193 AT
*** * *
4254882 TTTATTTTTTTTCTTTTTTTGTTTG-AAAATAA-ATATTAATTA-TTGTTATTGAAATTTTATCT
1 TTTATTTTTTTTCTTTTTTTGGAAGAAAAATAATATA-CAATTATTTGTTATTGAAATTTCATCT
* * ** *
4254944 AAATTATTTCACTATTTGGGATAAATTTAAAAAAATTTCTC-ACATAGAAATTT-TATAAAAATT
65 AAATTATTCCACCATTTGAAACAAATTTAAAAAAATTTCTCAAC-TAGAAATTTAT-TAAAAATT
* * *
4255007 TATCATTTGAAATTTTTAAAAATTTCATCATTGGATA
128 TACCATTTGAAATTTTAAAAAATCTCATCATTGGATA
4255044 ATTATTATTT
Statistics
Matches: 140, Mismatches: 19, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
192 23 0.16
193 80 0.57
194 1 0.01
195 7 0.05
196 7 0.05
197 22 0.16
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (194 bp):
TTTATTTTTTTTCTTTTTTTGGAAGAAAAATAATATACAATTATTTGTTATTGAAATTTCATCTA
AATTATTCCACCATTTGAAACAAATTTAAAAAAATTTCTCAACTAGAAATTTATTAAAAATTTAC
CATTTGAAATTTTAAAAAATCTCATCATTGGATAGTTGTCAAATATTTTCAACCAAAATTTTAT
Found at i:4255031 original size:24 final size:26
Alignment explanation
Indices: 4254990--4255038 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
4254980 TTCTCACATA
4254990 GAAATTTTATAAAAATTT-ATCATTT
1 GAAATTTTATAAAAATTTCATCATTT
4255015 GAAATTTT-TAAAAATTTCATCATT
1 GAAATTTTATAAAAATTTCATCATT
4255039 GGATAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (26 bp):
GAAATTTTATAAAAATTTCATCATTT
Found at i:4256205 original size:41 final size:41
Alignment explanation
Indices: 4256160--4256414 Score: 275
Period size: 40 Copynumber: 6.3 Consensus size: 41
4256150 ACAACTTTCG
* * *
4256160 AAAATAAAAGGCTCCTCTAAACAAAAGCACAATAATTTTGA
1 AAAATAAAAGGCTCCTCTAAACAAAGGCACAATGACTTTGA
*** ** * * ** *
4256201 AAAATAAAAAAATTTTCTAAATAGAGGCACAACAACTTTAA
1 AAAATAAAAGGCTCCTCTAAACAAAGGCACAATGACTTTGA
* *
4256242 AAAATAAAA-GCTCATCTAAACAGAGGCACAATGACTTTGA
1 AAAATAAAAGGCTCCTCTAAACAAAGGCACAATGACTTTGA
* * * *
4256282 AAAATAAAAGGCT-CTCTAAATAGAGGCACAACGACTTTAA
1 AAAATAAAAGGCTCCTCTAAACAAAGGCACAATGACTTTGA
* *
4256322 AAAATAAAA-GCTCATCTAAATAAAGGCACAATGACTTTGA
1 AAAATAAAAGGCTCCTCTAAACAAAGGCACAATGACTTTGA
* *
4256362 AAAATAAAAAGCTCCTCTAAACAAATGCACAATGACTTTGA
1 AAAATAAAAGGCTCCTCTAAACAAAGGCACAATGACTTTGA
4256403 AAAAT-AAAGGCT
1 AAAATAAAAGGCT
4256415 TATCGGCAAT
Statistics
Matches: 180, Mismatches: 31, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 102 0.57
41 75 0.42
ACGTcount: A:0.51, C:0.16, G:0.12, T:0.22
Consensus pattern (41 bp):
AAAATAAAAGGCTCCTCTAAACAAAGGCACAATGACTTTGA
Found at i:4256325 original size:80 final size:80
Alignment explanation
Indices: 4256114--4256410 Score: 335
Period size: 80 Copynumber: 3.7 Consensus size: 80
4256104 TTCTCAAACT
* * * * * * ** *
4256114 CTTTGAATAACAAAAA-CTCTTCTAAATAGAGTCTCCACAACTTTCGAAAATAAAAGGCTCCTCT
1 CTTTGAAAAATAAAAAGCTC-TCTAAATAGAGGCACAACGACTTTAAAAAATAAAA-GCTCATCT
* *
4256178 AAACAAAAGCACAATAA
64 AAACAAAGGCACAATGA
* ** * *
4256195 TTTTGAAAAATAAAAAAATTTTCTAAATAGAGGCACAACAACTTTAAAAAATAAAAGCTCATCTA
1 CTTTGAAAAAT-AAAAAGCTCTCTAAATAGAGGCACAACGACTTTAAAAAATAAAAGCTCATCTA
*
4256260 AACAGAGGCACAATGA
65 AACAAAGGCACAATGA
*
4256276 CTTTGAAAAATAAAAGGCTCTCTAAATAGAGGCACAACGACTTTAAAAAATAAAAGCTCATCTAA
1 CTTTGAAAAATAAAAAGCTCTCTAAATAGAGGCACAACGACTTTAAAAAATAAAAGCTCATCTAA
*
4256341 ATAAAGGCACAATGA
66 ACAAAGGCACAATGA
* * * * *
4256356 CTTTGAAAAATAAAAAGCTCCTCTAAACAAATGCACAATGACTTTGAAAAATAAA
1 CTTTGAAAAATAAAAAGCT-CTCTAAATAGAGGCACAACGACTTTAAAAAATAAA
4256411 GGCTTATCGG
Statistics
Matches: 185, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
80 80 0.43
81 69 0.37
82 35 0.19
83 1 0.01
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.23
Consensus pattern (80 bp):
CTTTGAAAAATAAAAAGCTCTCTAAATAGAGGCACAACGACTTTAAAAAATAAAAGCTCATCTAA
ACAAAGGCACAATGA
Found at i:4256960 original size:46 final size:46
Alignment explanation
Indices: 4256909--4257243 Score: 406
Period size: 46 Copynumber: 7.3 Consensus size: 46
4256899 TTCAAAGATA
* * * *
4256909 CTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGACTCAAAAGTG
1 CTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAAGTT
* ** * *
4256955 GTCATTTGAAAACGTCTTAAAGACTATCATTTAAGACTC-AAAGATT
1 CTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAAG-TT
* *
4257001 CTCATTTGAAAATATCTTAGAGATTCTCATTTAAGACTCAAAATTT
1 CTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAAGTT
* * * * *
4257047 TTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGATTCAAAAGTT
1 CTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAAGTT
* *
4257093 CTCATTTGAAAACATCTTAAAGATTCTCATTTAAGACTCAAAAATT
1 CTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAAGTT
* * *
4257139 CTCATTTGAAAACATCTTAAAGTTTTTCATTTAAGACTC-AAAGATT
1 CTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAAG-TT
* *
4257185 CTCATTTGAAAATATCTTAAAAATTCTCATTTAAGACTC-TAAGATT
1 CTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAAG-TT
*
4257231 TTCATTTGAAAAT
1 CTCATTTGAAAAT
4257244 TCATGACTTT
Statistics
Matches: 250, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
45 7 0.03
46 240 0.96
47 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (46 bp):
CTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAAGTT
Found at i:4257057 original size:92 final size:91
Alignment explanation
Indices: 4256900--4257242 Score: 472
Period size: 92 Copynumber: 3.7 Consensus size: 91
4256890 AACTCAAAAT
* * * * **
4256900 TCAAAGATACTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGACTCAAAAGTGGTCATTTGAA
1 TCAAAGATTCTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAA-TTTTCATTTGAA
* *
4256965 AACGTCTTAAAGACTATCATTTAAGAC
65 AACGTCTTAAAGATTTTCATTTAAGAC
*
4256992 TCAAAGATTCTCATTTGAAAATATCTTAGAGATTCTCATTTAAGACTCAAAATTTTTCATTTGAA
1 TCAAAGATTCTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAA-TTTTCATTTGAA
* * *
4257057 AATGTCTTAAAGATTTTTATTTAAGAT
65 AACGTCTTAAAGATTTTCATTTAAGAC
* *
4257084 TCAAA-AGTTCTCATTTGAAAACATCTTAAAGATTCTCATTTAAGACTCAAAAATTCTCATTTGA
1 TCAAAGA-TTCTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTC-AAAATTTTCATTTGA
* *
4257148 AAACATCTTAAAGTTTTTCATTTAAGAC
64 AAACGTCTTAAAGATTTTCATTTAAGAC
* *
4257176 TCAAAGATTCTCATTTGAAAATATCTTAAAAATTCTCATTTAAGACTCTAAGATTTTCATTTGAA
1 TCAAAGATTCTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTC-AAAATTTTCATTTGAA
4257241 AA
65 AA
4257243 TTCATGACTT
Statistics
Matches: 222, Mismatches: 26, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
91 1 0.00
92 216 0.97
93 5 0.02
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38
Consensus pattern (91 bp):
TCAAAGATTCTCATTTGAAAATATCTTAAAGATTCTCATTTAAGACTCAAAATTTTCATTTGAAA
ACGTCTTAAAGATTTTCATTTAAGAC
Found at i:4257236 original size:138 final size:138
Alignment explanation
Indices: 4256900--4257242 Score: 483
Period size: 138 Copynumber: 2.5 Consensus size: 138
4256890 AACTCAAAAT
* **
4256900 TCAAAGATACTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGACTCAAAAGTGGTCATTTGAA
1 TCAAAGATTCTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGACTCAAAAGTTCTCATTTGAA
* * * *
4256965 AACGTCTTAAAGACTATCATTTAAGACTCAAAGATTCTCATTTGAAAATATCTTAGAGATTCTCA
66 AACATCTTAAAGACTATCATTTAAGACTCAAAAATTCTCATTTGAAAACATCTTAAAGATTCTCA
4257030 TTTAAGAC
131 TTTAAGAC
* *
4257038 TCAAA-ATTTTTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGATTCAAAAGTTCTCATTTGA
1 TCAAAGA-TTCTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGACTCAAAAGTTCTCATTTGA
* * * *
4257102 AAACATCTTAAAGATTCTCATTTAAGACTCAAAAATTCTCATTTGAAAACATCTTAAAGTTTTTC
65 AAACATCTTAAAGACTATCATTTAAGACTCAAAAATTCTCATTTGAAAACATCTTAAAGATTCTC
4257167 ATTTAAGAC
130 ATTTAAGAC
* * * * * *
4257176 TCAAAGATTCTCATTTGAAAATATCTTAAAAATTCTCATTTAAGACTC-TAAGATTTTCATTTGA
1 TCAAAGATTCTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGACTCAAAAG-TTCTCATTTGA
4257240 AAA
65 AAA
4257243 TTCATGACTT
Statistics
Matches: 181, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
137 4 0.02
138 176 0.97
139 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38
Consensus pattern (138 bp):
TCAAAGATTCTCATTTGAAAATGTCTTAAAGATTTTTATTTAAGACTCAAAAGTTCTCATTTGAA
AACATCTTAAAGACTATCATTTAAGACTCAAAAATTCTCATTTGAAAACATCTTAAAGATTCTCA
TTTAAGAC
Found at i:4258409 original size:13 final size:13
Alignment explanation
Indices: 4258387--4258439 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 13
4258377 CATTCTTTCA
4258387 TTTTCTCTTT-TT
1 TTTTCTCTTTATT
4258399 TTTTCCTCTTTATT
1 TTTT-CTCTTTATT
*
4258413 TTTT-T-TTCATT
1 TTTTCTCTTTATT
*
4258424 TTTTATCTTT-TT
1 TTTTCTCTTTATT
4258436 TTTT
1 TTTT
4258440 AATTTTTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
11 9 0.26
12 12 0.34
13 8 0.23
14 6 0.17
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTCTCTTTATT
Found at i:4258428 original size:18 final size:18
Alignment explanation
Indices: 4258382--4258438 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 18
4258372 TTTTCCATTC
* *
4258382 TTTCATTTTCTCTTTTTT
1 TTTCATTTTTTATTTTTT
* *
4258400 TTTC-CTCTTTATTTTTT
1 TTTCATTTTTTATTTTTT
4258417 TTTCATTTTTTATCTTTTT
1 TTTCATTTTTTAT-TTTTT
4258436 TTT
1 TTT
4258439 TAATTTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
17 13 0.42
18 10 0.32
19 8 0.26
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTCATTTTTTATTTTTT
Found at i:4258445 original size:18 final size:18
Alignment explanation
Indices: 4258386--4258445 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
4258376 CCATTCTTTC
* *
4258386 ATTTTCTCTTTTTTTTTC
1 ATTTTATCTTTTTTTTTA
* *
4258404 CTCTTTAT-TTTTTTTTCA
1 AT-TTTATCTTTTTTTTTA
*
4258422 TTTTTTATCTTTTTTTTTA
1 -ATTTTATCTTTTTTTTTA
4258441 ATTTT
1 ATTTT
4258446 TTTCATCCAT
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
18 18 0.56
19 14 0.44
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (18 bp):
ATTTTATCTTTTTTTTTA
Found at i:4258925 original size:18 final size:18
Alignment explanation
Indices: 4258904--4258949 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
4258894 TCAACTAAAA
*
4258904 TTTTATTTTTTTTATTTT
1 TTTTAGTTTTTTTATTTT
* *
4258922 TTTTGGTTTTTTTCTTTT
1 TTTTAGTTTTTTTATTTT
*
4258940 TTTTCGTTTT
1 TTTTAGTTTT
4258950 AAAACAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.04, C:0.04, G:0.07, T:0.85
Consensus pattern (18 bp):
TTTTAGTTTTTTTATTTT
Found at i:4258944 original size:9 final size:9
Alignment explanation
Indices: 4258904--4258943 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
4258894 TCAACTAAAA
4258904 TTTTATTTT
1 TTTTATTTT
4258913 TTTTATTTT
1 TTTTATTTT
**
4258922 TTTTGGTTT
1 TTTTATTTT
*
4258931 TTTTCTTTT
1 TTTTATTTT
4258940 TTTT
1 TTTT
4258944 CGTTTTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.05, C:0.03, G:0.05, T:0.88
Consensus pattern (9 bp):
TTTTATTTT
Found at i:4259211 original size:30 final size:29
Alignment explanation
Indices: 4259154--4259213 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
4259144 TAATCATGCA
* *
4259154 AAAATACTTAAAAAAACAAACACATAAAT
1 AAAATACTAAAAAAAACAAACAAATAAAT
* *
4259183 AAAATACTAAATAAAAATAAATAAATAAAT
1 AAAATACTAAA-AAAAACAAACAAATAAAT
4259213 A
1 A
4259214 CCAAAAAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (29 bp):
AAAATACTAAAAAAAACAAACAAATAAAT
Found at i:4264940 original size:54 final size:53
Alignment explanation
Indices: 4264869--4265087 Score: 146
Period size: 54 Copynumber: 4.1 Consensus size: 53
4264859 GTTTATTTTA
* *
4264869 TTTTTTACAAATTTTTGAAAAAAATTAATTTTAAGAAAAATTGATATTTCAAC
1 TTTTTTTCAAAATTTTGAAAAAAATTAATTTTAAGAAAAATTGATATTTCAAC
*
4264922 TTTTTTTCCAAAATTTTG---AAAA-TAATTTTAAAGGGAAAATTGATATTTCAA-
1 TTTTTTT-CAAAATTTTGAAAAAAATTAATTTT-AA-GAAAAATTGATATTTCAAC
* * * ** ** * *
4264973 TTTTTTTCAGATTTTTTAATTCATTTTTATTTTAAGAAAAATTTGATATTTTAAC
1 TTTTTTTCAAAATTTTGAA-AAAAATTAATTTTAAGAAAAA-TTGATATTTCAAC
*** * * *
4265028 TTTTTTTTC-AAA-TTTGAAATTATTTTTCACTTTAAGAAAAAATTGTTATTTCAAC
1 -TTTTTTTCAAAATTTTGAAA--AAAATTAATTTTAAG-AAAAATTGATATTTCAAC
4265083 TTTTT
1 TTTTT
4265088 CCTCAAAGTT
Statistics
Matches: 130, Mismatches: 22, Indels: 27
0.73 0.12 0.15
Matches are distributed among these distances:
50 14 0.11
51 13 0.10
52 17 0.13
53 11 0.08
54 33 0.25
55 29 0.22
56 13 0.10
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.50
Consensus pattern (53 bp):
TTTTTTTCAAAATTTTGAAAAAAATTAATTTTAAGAAAAATTGATATTTCAAC
Found at i:4265067 original size:55 final size:53
Alignment explanation
Indices: 4264898--4265123 Score: 212
Period size: 55 Copynumber: 4.2 Consensus size: 53
4264888 AAAAATTAAT
* * * *
4264898 TTTAAGAAAAATTGATATTTCAACTTTTTTTCCAAAATTTTGAAAATAATTTTA
1 TTTAAGAAAAATTGATATTTCAACTTTTTTTTC-AAAGTTTGAAATTATTTTTA
* * * **
4264952 ---AAGGGAAAATTGATATTTCAA--TTTTTTTCAGATTTTTTAATTCATTTTTA
1 TTTAA-GAAAAATTGATATTTCAACTTTTTTTTCAAAGTTTGAAATT-ATTTTTA
*
4265002 TTTTAAGAAAAATTTGATATTTTAACTTTTTTTTCAAA-TTTGAAATTATTTTTCA
1 -TTTAAGAAAAA-TTGATATTTCAACTTTTTTTTCAAAGTTTGAAATTATTTTT-A
* **
4265057 CTTTAAGAAAAAATTGTTATTTCAACTTTTTCCTCAAAGTTTGAAATTATTTTTA
1 -TTTAAG-AAAAATTGATATTTCAACTTTTTTTTCAAAGTTTGAAATTATTTTTA
4265112 TTTCAAGAAAAA
1 TTT-AAGAAAAA
4265124 AAATTAATAT
Statistics
Matches: 142, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
49 9 0.06
50 13 0.09
51 2 0.01
52 17 0.12
53 5 0.04
54 27 0.19
55 39 0.27
56 30 0.21
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.49
Consensus pattern (53 bp):
TTTAAGAAAAATTGATATTTCAACTTTTTTTTCAAAGTTTGAAATTATTTTTA
Found at i:4265124 original size:55 final size:53
Alignment explanation
Indices: 4264898--4265200 Score: 203
Period size: 55 Copynumber: 5.6 Consensus size: 53
4264888 AAAAATTAAT
* * *
4264898 TTTAAG-AAAAATTGATATTTCAACTTTTTTTCC-AAAATTTTGAAAATAATTTTA
1 TTTAAGAAAAAATTGATATTTCAAC--TTTTTCCTCAAA-TTTGAAATTATTTTTA
** * * **
4264952 ---AAGGGAAAATTGATATTTCAA-TTTTT-TTCAGATTTTTTAATTCATTTTTA
1 TTTAAGAAAAAATTGATATTTCAACTTTTTCCTCA-AATTTGAAATT-ATTTTTA
* * **
4265002 TTTTAAGAAAAATTTGATATTTTAACTTTTTTTTCAAATTTGAAATTATTTTTCA
1 -TTTAAGAAAAAATTGATATTTCAACTTTTTCCTCAAATTTGAAATTATTTTT-A
*
4265057 CTTTAAGAAAAAATTGTTATTTCAACTTTTTCCTCAAAGTTTGAAATTATTTTTA
1 -TTTAAGAAAAAATTGATATTTCAACTTTTTCCTCAAA-TTTGAAATTATTTTTA
* * * * *
4265112 TTTCAAGAAAAAAAATTAATATTTTAACTTTTT-CTTATATTTTTAAAATTA-TTTT-
1 TTT-AAG--AAAAAATTGATATTTCAACTTTTTCCTCA-A-ATTTGAAATTATTTTTA
* * *
4265167 TTTAAGGAAAAAAATAATATTTGAACTTTTTCCT
1 TTTAA-GAAAAAATTGATATTTCAACTTTTTCCT
4265201 TGAATTTTTT
Statistics
Matches: 201, Mismatches: 29, Indels: 38
0.75 0.11 0.14
Matches are distributed among these distances:
49 12 0.06
50 7 0.03
51 3 0.01
52 16 0.08
53 22 0.11
54 30 0.15
55 54 0.27
56 26 0.13
57 31 0.15
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.50
Consensus pattern (53 bp):
TTTAAGAAAAAATTGATATTTCAACTTTTTCCTCAAATTTGAAATTATTTTTA
Found at i:4265177 original size:110 final size:109
Alignment explanation
Indices: 4264990--4265200 Score: 241
Period size: 110 Copynumber: 1.9 Consensus size: 109
4264980 CAGATTTTTT
* * * *
4264990 AATTCATTTTTATTTTAAGAAAAATTTGATATTTTAACTTTTTTTTCAAATTTGAAATTATTTTT
1 AATTCATTTTTATTTCAAGAAAAAATTAATATTTTAACTTTTTTTTCAAATTTAAAATTATTTTT
* **
4265055 CACTTTAAGAAAAAATTGTTATTTCAACTTTTTCCTCAAAGTTTGA
66 --CTTTAAGAAAAAAATAATATTTCAACTTTTTCCTCAAAGTTTGA
**
4265101 AATT-ATTTTTATTTCAAGAAAAAAAATTAATATTTTAACTTTTTCTTAT-ATTTTTAAAATTA-
1 AATTCATTTTTATTTCAAG--AAAAAATTAATATTTTAACTTTTT-TT-TCAAATTTAAAATTAT
*
4265163 TTTT-TTTAAGGAAAAAAATAATATTTGAACTTTTTCCT
62 TTTTCTTTAA-GAAAAAAATAATATTTCAACTTTTTCCT
4265201 TGAATTTTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
109 5 0.06
110 37 0.44
111 4 0.05
112 26 0.31
113 12 0.14
114 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (109 bp):
AATTCATTTTTATTTCAAGAAAAAATTAATATTTTAACTTTTTTTTCAAATTTAAAATTATTTTT
CTTTAAGAAAAAAATAATATTTCAACTTTTTCCTCAAAGTTTGA
Found at i:4265738 original size:16 final size:16
Alignment explanation
Indices: 4265717--4265747 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4265707 AGAATTTCAC
*
4265717 AAAAAAAAATTCAAAA
1 AAAAAAAAAGTCAAAA
4265733 AAAAAAAAAGTCAAA
1 AAAAAAAAAGTCAAA
4265748 TTTTGCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.06, G:0.03, T:0.10
Consensus pattern (16 bp):
AAAAAAAAAGTCAAAA
Found at i:4270551 original size:11 final size:11
Alignment explanation
Indices: 4270535--4270561 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
4270525 TCATATAACT
4270535 AATTATTAGAA
1 AATTATTAGAA
4270546 AATTATTAGAA
1 AATTATTAGAA
4270557 AATTA
1 AATTA
4270562 AATTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (11 bp):
AATTATTAGAA
Found at i:4271027 original size:2 final size:2
Alignment explanation
Indices: 4271020--4271053 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
4271010 GTATGTTGTA
4271020 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4271054 GATGTGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4276493 original size:27 final size:29
Alignment explanation
Indices: 4276463--4276521 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
4276453 CGTAAACTGA
*
4276463 ATTTAAATAT-TAA-TTTTAATAAAATTT
1 ATTTAAATATAAAATTTTTAATAAAATTT
*
4276490 ATTT-AATATAAAATTTTTATTAAAATTT
1 ATTTAAATATAAAATTTTTAATAAAATTT
4276518 -TTTA
1 ATTTA
4276522 TCATAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
26 5 0.19
27 9 0.33
28 13 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
ATTTAAATATAAAATTTTTAATAAAATTT
Found at i:4276496 original size:14 final size:13
Alignment explanation
Indices: 4276476--4276521 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
4276466 TAAATATTAA
4276476 TTTTAATAAAATT
1 TTTTAATAAAATT
*
4276489 TATTTAATATAAAAT
1 T-TTTAATA-AAATT
*
4276504 TTTTATTAAAATT
1 TTTTAATAAAATT
4276517 TTTTA
1 TTTTA
4276522 TCATAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 10 0.36
14 13 0.46
15 5 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTTAATAAAATT
Found at i:4276569 original size:21 final size:22
Alignment explanation
Indices: 4276513--4276569 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
4276503 TTTTTATTAA
* * *
4276513 AATTTTTTATCATAATTATAAT
1 AATTTTTTATTACAATTACAAT
4276535 AATTTTTTTAATTACAATTACAAT
1 AA-TTTTTT-ATTACAATTACAAT
4276559 AA-TTTTTATTA
1 AATTTTTTATTA
4276570 ATATTTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 4 0.13
22 7 0.23
23 6 0.20
24 13 0.43
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.54
Consensus pattern (22 bp):
AATTTTTTATTACAATTACAAT
Found at i:4279334 original size:19 final size:20
Alignment explanation
Indices: 4279312--4279357 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
4279302 CTTTTCACTA
* * *
4279312 AATTAACTCTCATTAGCT-T
1 AATTAAATCACATTAACTCT
4279331 AATTAAATCACATTAACTCT
1 AATTAAATCACATTAACTCT
4279351 AATTAAA
1 AATTAAA
4279358 ATGAATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.37
Consensus pattern (20 bp):
AATTAAATCACATTAACTCT
Found at i:4283131 original size:26 final size:26
Alignment explanation
Indices: 4283102--4283156 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
4283092 CTTGATTGGC
4283102 ATTCAGAACAAGCCACAAATAGCAGT
1 ATTCAGAACAAGCCACAAATAGCAGT
4283128 ATTCAGAACAAGCCACAAATAGCAGT
1 ATTCAGAACAAGCCACAAATAGCAGT
4283154 ATT
1 ATT
4283157 TAAGATCGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.45, C:0.22, G:0.15, T:0.18
Consensus pattern (26 bp):
ATTCAGAACAAGCCACAAATAGCAGT
Found at i:4287360 original size:110 final size:110
Alignment explanation
Indices: 4287167--4287389 Score: 428
Period size: 110 Copynumber: 2.0 Consensus size: 110
4287157 AAAGGAAATT
*
4287167 TATAGATCTTTAACTTAATTGATGCGATTAGTTATAGCAAAATTTTCCTTTTTTGCTTTATGCGC
1 TATAGATCTTTAACTTAATTGATGCGATTAGTTATAGCAAAATTTTCCTTTTTTGCTTTATGAGC
4287232 GAACAAATTCTGGGAATATCTCATTTTATTAGAAGTTTCATATCG
66 GAACAAATTCTGGGAATATCTCATTTTATTAGAAGTTTCATATCG
4287277 TATAGATCTTTAACTTAATTGATGCGATTAGTTATAGCAAAATTTTCCTTTTTTGCTTTATGAGC
1 TATAGATCTTTAACTTAATTGATGCGATTAGTTATAGCAAAATTTTCCTTTTTTGCTTTATGAGC
*
4287342 GAACGAATTCTGGGAATATCTCATTTTATTAGAAGTTTCATATCG
66 GAACAAATTCTGGGAATATCTCATTTTATTAGAAGTTTCATATCG
4287387 TAT
1 TAT
4287390 TAGTATTGAT
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 111 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (110 bp):
TATAGATCTTTAACTTAATTGATGCGATTAGTTATAGCAAAATTTTCCTTTTTTGCTTTATGAGC
GAACAAATTCTGGGAATATCTCATTTTATTAGAAGTTTCATATCG
Found at i:4292916 original size:15 final size:15
Alignment explanation
Indices: 4292896--4292927 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4292886 TAGCTACTTC
*
4292896 TAATGAAGTGCGTGG
1 TAATGAAGTGCATGG
4292911 TAATGAAGTGCATGG
1 TAATGAAGTGCATGG
4292926 TA
1 TA
4292928 TTATGTTCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.34, T:0.28
Consensus pattern (15 bp):
TAATGAAGTGCATGG
Found at i:4306009 original size:85 final size:83
Alignment explanation
Indices: 4305861--4306029 Score: 270
Period size: 85 Copynumber: 2.0 Consensus size: 83
4305851 TAAGGCAAAG
*
4305861 CTGATTTGTTTGTTTGTTTGTCCGAAACTGAACGTATAACACTTTTTGTGATCGGTCCCAAAAAA
1 CTGATTTGTTTGTTTGTTTGTCCGAAACTGAAAGTATAACACTTTTTGTGA--GGTCCCAAAAAA
4305926 AATAATAGTCTCTGAAATGA
64 AATAATAGTCTCTGAAATGA
4305946 CTGATTTGTTTGTTTGTTTGTCCGAAACTGAAAGTATAACACTTTTT-TG-GGTCCCAAAAAAAA
1 CTGATTTGTTTGTTTGTTTGTCCGAAACTGAAAGTATAACACTTTTTGTGAGGTCCC-AAAAAAA
* *
4306009 ATGATAGTTTCTGAAATGA
65 ATAATAGTCTCTGAAATGA
4306028 CT
1 CT
4306030 AAAATGGGGT
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
81 6 0.08
82 26 0.32
84 2 0.03
85 46 0.57
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (83 bp):
CTGATTTGTTTGTTTGTTTGTCCGAAACTGAAAGTATAACACTTTTTGTGAGGTCCCAAAAAAAA
TAATAGTCTCTGAAATGA
Found at i:4306702 original size:40 final size:40
Alignment explanation
Indices: 4306647--4306724 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
4306637 AGGTCAGAGC
* * *
4306647 TTCACCAGACCTAAGTCCTTAACCCCAATAGGAAAAATGT
1 TTCACAAGAACTAAGTCCTTAAACCCAATAGGAAAAATGT
4306687 TTCACAAGAACTAAGTCCTTAAACCCAATAGGAAAAAT
1 TTCACAAGAACTAAGTCCTTAAACCCAATAGGAAAAAT
4306725 TAAAATGACC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.22
Consensus pattern (40 bp):
TTCACAAGAACTAAGTCCTTAAACCCAATAGGAAAAATGT
Found at i:4306751 original size:37 final size:37
Alignment explanation
Indices: 4306654--4306767 Score: 122
Period size: 37 Copynumber: 3.0 Consensus size: 37
4306644 AGCTTCACCA
*
4306654 GACCTAAGTCCTTAACCCCAATAGGAAAAATGTTTCACAA-
1 GACCTAAGTCCTTAACCCCAATAGGAAAAA---TT-AAAAT
* *
4306694 GAACTAAGTCCTTAAACCCAATAGGAAAAATTAAAAT
1 GACCTAAGTCCTTAACCCCAATAGGAAAAATTAAAAT
* * * *
4306731 GACCTAAGCCCTTATCCCCAATTGGAAAAACTAAAAT
1 GACCTAAGTCCTTAACCCCAATAGGAAAAATTAAAAT
4306768 AAATTGCGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
36 3 0.05
37 33 0.52
40 28 0.44
ACGTcount: A:0.44, C:0.23, G:0.11, T:0.22
Consensus pattern (37 bp):
GACCTAAGTCCTTAACCCCAATAGGAAAAATTAAAAT
Found at i:4311316 original size:21 final size:22
Alignment explanation
Indices: 4311290--4311338 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
4311280 CTTAGTTTGA
4311290 AAGAGAAACAAACAT-C-GAACT
1 AAGAGAAAC-AACATACTGAACT
*
4311311 AAGAG-AACAAGATACTGAACT
1 AAGAGAAACAACATACTGAACT
4311332 AAGAGAA
1 AAGAGAA
4311339 CATGATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.17
20 4 0.17
21 15 0.62
22 1 0.04
ACGTcount: A:0.57, C:0.14, G:0.18, T:0.10
Consensus pattern (22 bp):
AAGAGAAACAACATACTGAACT
Found at i:4311339 original size:21 final size:21
Alignment explanation
Indices: 4311306--4311345 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
4311296 AACAAACATC
4311306 GAACTAAGAGAACAAGATACT
1 GAACTAAGAGAACAAGATACT
*
4311327 GAACTAAGAGAACATGATA
1 GAACTAAGAGAACAAGATA
4311346 AAATTTCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.20, T:0.15
Consensus pattern (21 bp):
GAACTAAGAGAACAAGATACT
Found at i:4315825 original size:29 final size:30
Alignment explanation
Indices: 4315779--4315851 Score: 112
Period size: 29 Copynumber: 2.4 Consensus size: 30
4315769 ATGAATAATT
4315779 TTTAAATTATAATAAAATATTTAATATAAAA
1 TTTAAATTATAA-AAAATATTTAATATAAAA
* *
4315810 TTTAAATT-TAAAAAATTTTTAATATAATA
1 TTTAAATTATAAAAAATATTTAATATAAAA
4315839 TTTAAATTATAAA
1 TTTAAATTATAAA
4315852 TTTATTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
29 24 0.62
30 7 0.18
31 8 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
TTTAAATTATAAAAAATATTTAATATAAAA
Found at i:4315852 original size:27 final size:29
Alignment explanation
Indices: 4315773--4315866 Score: 104
Period size: 29 Copynumber: 3.2 Consensus size: 29
4315763 AATATCATGA
* *
4315773 ATAATTTTTAAATTATAATAAAATATTTAAT
1 ATAATATTTAAATT-TAA-AAAATTTTTAAT
*
4315804 ATAAAATTTAAATTTAAAAAATTTTTAAT
1 ATAATATTTAAATTTAAAAAATTTTTAAT
*
4315833 ATAATATTTAAA-TT-ATAAATTTATTAAT
1 ATAATATTTAAATTTAAAAAATTT-TTAAT
4315861 -TAATAT
1 ATAATAT
4315867 GATATTTTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 13 0.23
28 7 0.12
29 22 0.39
30 3 0.05
31 12 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
ATAATATTTAAATTTAAAAAATTTTTAAT
Found at i:4319224 original size:28 final size:26
Alignment explanation
Indices: 4319192--4319243 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
4319182 TTATTGATAA
*
4319192 ATAAATGTGAATTTTTAAAATAAAATAC
1 ATAAAT-TAAATTTTTAAAA-AAAATAC
*
4319220 ATAAATTAAATTTTTTAAAAAAAT
1 ATAAATTAAATTTTTAAAAAAAAT
4319244 TTATTGATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 11 0.50
28 6 0.27
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (26 bp):
ATAAATTAAATTTTTAAAAAAAATAC
Found at i:4323112 original size:22 final size:23
Alignment explanation
Indices: 4323087--4323130 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
4323077 ACATGTGCTA
4323087 ATGG-AAAAGAAAATG-GTTAAAG
1 ATGGAAAAAGAAAA-GAGTTAAAG
4323109 ATGGAAAAAGAAAAGAGTTAAA
1 ATGGAAAAAGAAAAGAGTTAAA
4323131 AAATGTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.59, C:0.00, G:0.25, T:0.16
Consensus pattern (23 bp):
ATGGAAAAAGAAAAGAGTTAAAG
Found at i:4326327 original size:2 final size:2
Alignment explanation
Indices: 4326320--4326352 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4326310 AATGGCATTG
4326320 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
4326353 CCAATGGCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:4336167 original size:20 final size:18
Alignment explanation
Indices: 4336130--4336175 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
4336120 AAATCATAAT
4336130 ATTTAA-TTATGATTATA
1 ATTTAATTTATGATTATA
4336147 ATTTAATTTATGATTTTATA
1 ATTTAATTTATGA--TTATA
*
4336167 ATATAATTT
1 ATTTAATTT
4336176 TCAGAAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 6 0.24
18 6 0.24
20 13 0.52
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
ATTTAATTTATGATTATA
Found at i:4342565 original size:17 final size:17
Alignment explanation
Indices: 4342543--4342575 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4342533 ATATTTCATT
*
4342543 TAAAATAATAGTCCTTC
1 TAAAATAATACTCCTTC
4342560 TAAAATAATACTCCTT
1 TAAAATAATACTCCTT
4342576 TAGAAGACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.36
Consensus pattern (17 bp):
TAAAATAATACTCCTTC
Found at i:4347341 original size:2 final size:2
Alignment explanation
Indices: 4347328--4347358 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
4347318 CTTTGAATTG
*
4347328 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4347359 AAAGCATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:4349786 original size:15 final size:16
Alignment explanation
Indices: 4349766--4349798 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
4349756 TAACTTGATT
4349766 ATTTTTTA-GTAATAA
1 ATTTTTTATGTAATAA
*
4349781 ATTTTTTATGTATTAA
1 ATTTTTTATGTAATAA
4349797 AT
1 AT
4349799 ATGTATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
ATTTTTTATGTAATAA
Found at i:4353581 original size:52 final size:52
Alignment explanation
Indices: 4353522--4353626 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
4353512 TGATTTCTAT
* *
4353522 ATTCAATTACAACAAGTAAGTATGAGCTCAGTCTATTGATAATAGACCTTTA
1 ATTCAATTACAACAAATAAGTATGAGCTCAATCTATTGATAATAGACCTTTA
4353574 ATTCAATTACAACAAATAAGTATGAGCTCAATCTATTGATAATAGACCTTTA
1 ATTCAATTACAACAAATAAGTATGAGCTCAATCTATTGATAATAGACCTTTA
4353626 A
1 A
4353627 ATTATCTACA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.32
Consensus pattern (52 bp):
ATTCAATTACAACAAATAAGTATGAGCTCAATCTATTGATAATAGACCTTTA
Found at i:4359896 original size:16 final size:16
Alignment explanation
Indices: 4359875--4359919 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
4359865 CAATTTTGGA
*
4359875 TTGGATTATTTTGATT
1 TTGGATTATTTTGAGT
*
4359891 TTGGATTATTTTTAGT
1 TTGGATTATTTTGAGT
*
4359907 TTGGATCATTTTG
1 TTGGATTATTTTG
4359920 GGTTCGAGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.18, C:0.02, G:0.20, T:0.60
Consensus pattern (16 bp):
TTGGATTATTTTGAGT
Found at i:4360521 original size:30 final size:29
Alignment explanation
Indices: 4360487--4360577 Score: 70
Period size: 30 Copynumber: 3.2 Consensus size: 29
4360477 TTATATTTAA
4360487 TTTAATTTAATATAAATGTATAAAAATTAT
1 TTTAATTTAATATAAAT-TATAAAAATTAT
4360517 TTTAAATTT--T-T-AATTATAATACACAATTAT
1 TTT-AATTTAATATAAATTAT-A-A-A-AATTAT
*
4360547 ATT--TTTAATAT-AATTATAAAAATTAT
1 TTTAATTTAATATAAATTATAAAAATTAT
4360573 TTTAA
1 TTTAA
4360578 ATCTATATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 22
0.67 0.03 0.30
Matches are distributed among these distances:
26 11 0.22
27 8 0.16
28 3 0.06
29 4 0.08
30 18 0.37
31 5 0.10
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (29 bp):
TTTAATTTAATATAAATTATAAAAATTAT
Found at i:4360982 original size:153 final size:150
Alignment explanation
Indices: 4360792--4361161 Score: 430
Period size: 153 Copynumber: 2.5 Consensus size: 150
4360782 TTGTGAATTG
* * * * *
4360792 ATCATTTTAT-TATTTTTAACAATATAAAATACTCATTTTATCTTTTAATTAAAATAAAATAATT
1 ATCATTTTATCT-TTTTCAATATTATAAAATAATCATTTTATCTTTTAATTAAAATAAAATAACT
* *
4360856 TAAAACATAAATAATAAAAAAT-AATAATATATTAAAAGAATTTTCAAATG-GGTTATATTTT-A
65 TAAAACATAAATAATAAAAAATGAA-AATATATTAAAAGAATTTACAAA-GAAGTTATATTTTAA
*
4360918 -ACATTATCAAATATTATAATTAA-A
128 GACA-TATCAAATATTAGAA--AATA
* * **
4360942 ATGAACATTTTATCTTTTTCAATATTATTAAATAATCATTTTATCTTTTAATCAAAATTCAATAA
1 AT---CATTTTATCTTTTTCAATATTATAAAATAATCATTTTATCTTTTAATTAAAATAAAATAA
* ** *
4361007 CATAAAATGTAAATAATAAAAAATGAAGATATATTAAAAGAATTTACAAAGAAGTTATATTTTAA
63 CTTAAAACATAAATAATAAAAAATGAAAATATATTAAAAGAATTTACAAAGAAGTTATATTTTAA
*
4361072 GACATATCCAATATTAGAAAATA
128 GACATATCAAATATTAGAAAATA
* * *
4361095 ATCATTTTATCTTTTTTAATATTATAAAATAATCATTTTACCTTTCAA-TAAAATAAAATAACTT
1 ATCATTTTATCTTTTTCAATATTATAAAATAATCATTTTATCTTTTAATTAAAATAAAATAACTT
4361159 AAA
66 AAA
4361162 TTTAAAAAAA
Statistics
Matches: 186, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
149 15 0.08
150 44 0.24
152 3 0.02
153 104 0.56
154 17 0.09
155 3 0.02
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.40
Consensus pattern (150 bp):
ATCATTTTATCTTTTTCAATATTATAAAATAATCATTTTATCTTTTAATTAAAATAAAATAACTT
AAAACATAAATAATAAAAAATGAAAATATATTAAAAGAATTTACAAAGAAGTTATATTTTAAGAC
ATATCAAATATTAGAAAATA
Found at i:4361117 original size:31 final size:31
Alignment explanation
Indices: 4361081--4361139 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
4361071 AGACATATCC
*
4361081 AATATTAGAAAATAATCATTTTATCTTTTTT
1 AATATTAGAAAATAATCATTTTACCTTTTTT
*
4361112 AATATTATAAAATAATCATTTTACCTTT
1 AATATTAGAAAATAATCATTTTACCTTT
4361140 CAATAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (31 bp):
AATATTAGAAAATAATCATTTTACCTTTTTT
Found at i:4361154 original size:29 final size:31
Alignment explanation
Indices: 4361089--4361155 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 31
4361079 CCAATATTAG
* * **
4361089 AAAATAATCATTTTATCTTTTTTAATATTAT
1 AAAATAATCATTTTATCTCTTTCAATAAAAT
4361120 AAAATAATCATTTTA-C-CTTTCAATAAAAT
1 AAAATAATCATTTTATCTCTTTCAATAAAAT
4361149 AAAATAA
1 AAAATAA
4361156 CTTAAATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.50
30 1 0.03
31 15 0.47
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (31 bp):
AAAATAATCATTTTATCTCTTTCAATAAAAT
Found at i:4366315 original size:30 final size:30
Alignment explanation
Indices: 4366281--4366381 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
4366271 TATCAAATTG
4366281 AGAGTTTAATTGAATGAAATTAAATATTTA
1 AGAGTTTAATTGAATGAAATTAAATATTTA
* *
4366311 AGAGTTTAATT-AGATAAAAATAAATATTTA
1 AGAGTTTAATTGA-ATGAAATTAAATATTTA
* *
4366341 AGAATTTAATTGAATCGAAATAAAATATTTA
1 AGAGTTTAATTGAAT-GAAATTAAATATTTA
4366372 AGA-TTTAATT
1 AGAGTTTAATT
4366382 AATTGTAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
29 1 0.02
30 45 0.73
31 16 0.26
ACGTcount: A:0.50, C:0.01, G:0.11, T:0.39
Consensus pattern (30 bp):
AGAGTTTAATTGAATGAAATTAAATATTTA
Found at i:4366370 original size:31 final size:29
Alignment explanation
Indices: 4366285--4366397 Score: 122
Period size: 30 Copynumber: 3.8 Consensus size: 29
4366275 AAATTGAGAG
* *
4366285 TTTAATTGAATGAAATTAAATATTTAAGAG
1 TTTAATT-AATGAAATAAAATATTTAAGAA
*
4366315 TTTAATTAGAT-AAAAATAAATATTTAAGAA
1 TTTAATTA-ATGAAATA-AAATATTTAAGAA
4366345 TTTAATTGAATCGAAATAAAATATTTAAG-A
1 TTTAATT-AAT-GAAATAAAATATTTAAGAA
*
4366375 TTTAATTAATTGTAATAAAATAT
1 TTTAATTAA-TGAAATAAAATAT
4366398 AAAAAATTTA
Statistics
Matches: 72, Mismatches: 5, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
29 17 0.24
30 39 0.54
31 12 0.17
32 4 0.06
ACGTcount: A:0.50, C:0.01, G:0.09, T:0.40
Consensus pattern (29 bp):
TTTAATTAATGAAATAAAATATTTAAGAA
Found at i:4366406 original size:29 final size:30
Alignment explanation
Indices: 4366343--4366408 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
4366333 AATATTTAAG
**
4366343 AATTTAATTGAATCGAAATAAAATATTTAA
1 AATTTAATTGAATCGAAATAAAATATAAAA
* * *
4366373 GATTTAATT-AATTGTAATAAAATATAAAA
1 AATTTAATTGAATCGAAATAAAATATAAAA
4366402 AATTTAA
1 AATTTAA
4366409 ATTGTTATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 22 0.73
30 8 0.27
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.38
Consensus pattern (30 bp):
AATTTAATTGAATCGAAATAAAATATAAAA
Found at i:4366412 original size:60 final size:60
Alignment explanation
Indices: 4366285--4366408 Score: 155
Period size: 60 Copynumber: 2.1 Consensus size: 60
4366275 AAATTGAGAG
* * *
4366285 TTTAATTGAATGAAATTAAATATTTAAGAGTTTAATTAGATAAAAATAAATATTTAAGAA
1 TTTAATTGAATGAAATAAAATATTTAAGAGTTTAATTAGATAAAAATAAATATTAAAAAA
***
4366345 TTTAATTGAATCGAAATAAAATATTTAAGA-TTTAATTA-ATTGTAATAAA-ATATAAAAAA
1 TTTAATTGAAT-GAAATAAAATATTTAAGAGTTTAATTAGATAAAAATAAATAT-TAAAAAA
4366404 TTTAA
1 TTTAA
4366409 ATTGTTATTA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
58 2 0.04
59 18 0.32
60 19 0.34
61 17 0.30
ACGTcount: A:0.52, C:0.01, G:0.08, T:0.39
Consensus pattern (60 bp):
TTTAATTGAATGAAATAAAATATTTAAGAGTTTAATTAGATAAAAATAAATATTAAAAAA
Found at i:4366697 original size:29 final size:29
Alignment explanation
Indices: 4366664--4366720 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
4366654 AAGTTTGGAT
4366664 TTAA-TTTATGATAATATTT-TATTAAATAA
1 TTAATTTTAT-ATAAT-TTTATATTAAATAA
*
4366693 TTAATTTTATATAATTTTATTTTAAATA
1 TTAATTTTATATAATTTTATATTAAATA
4366721 TATATTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 3 0.12
29 17 0.68
30 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (29 bp):
TTAATTTTATATAATTTTATATTAAATAA
Found at i:4366858 original size:27 final size:22
Alignment explanation
Indices: 4366827--4366887 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 22
4366817 ACGTAAATTT
4366827 AATAATTTAAAACATGGAAGATATGAA
1 AATAATTTAAAA-AT--AA-ATAT-AA
* *
4366854 TATAATATAAAAATAAATATAA
1 AATAATTTAAAAATAAATATAA
4366876 AATAATTTAAAA
1 AATAATTTAAAA
4366888 TTTTAATAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 12 0.40
23 4 0.13
24 2 0.07
26 2 0.07
27 10 0.33
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.30
Consensus pattern (22 bp):
AATAATTTAAAAATAAATATAA
Found at i:4368296 original size:27 final size:27
Alignment explanation
Indices: 4368258--4368309 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
4368248 TAGTTACTGT
4368258 CTGTCTGATTGCAAGGAATGATCCTCA
1 CTGTCTGATTGCAAGGAATGATCCTCA
*
4368285 CTGTCTGATTGCAGGGAATGATCCT
1 CTGTCTGATTGCAAGGAATGATCCT
4368310 TGATACCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (27 bp):
CTGTCTGATTGCAAGGAATGATCCTCA
Done.