Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 32 of 129
Found at i:6531564 original size:3 final size:3
Alignment explanation
Indices: 6531556--6531581 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6531546 ATACAAATTC
6531556 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
6531582 CAAATATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:6531929 original size:18 final size:18
Alignment explanation
Indices: 6531877--6531931 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
6531867 ATATATGATA
*
6531877 AAATTAATCAAAACAAAT
1 AAATTAATCAAAAAAAAT
*
6531895 AAATTAATCAAATAAAAT
1 AAATTAATCAAAAAAAAT
*
6531913 AATCAATAATCAAAAAAAA
1 AA--ATTAATCAAAAAAAA
6531932 AAAAAAAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 18 0.58
20 13 0.42
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (18 bp):
AAATTAATCAAAAAAAAT
Found at i:6539297 original size:22 final size:22
Alignment explanation
Indices: 6539247--6539297 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
6539237 AAAATACGAT
*
6539247 AAAATTTAAAATTTTAATAAAA
1 AAAATATAAAATTTTAATAAAA
** *
6539269 ATTATATAAAATTTTGATAAAA
1 AAAATATAAAATTTTAATAAAA
6539291 AAAATAT
1 AAAATAT
6539298 TATGTTTAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
AAAATATAAAATTTTAATAAAA
Found at i:6539361 original size:21 final size:21
Alignment explanation
Indices: 6539324--6539363 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6539314 ACACAAATTA
*
6539324 TAATAAAATACATTAAATATT
1 TAATAAAATAAATTAAATATT
6539345 TAAT-AAATAAATATAAATA
1 TAATAAAATAAAT-TAAATA
6539364 CACGAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
TAATAAAATAAATTAAATATT
Found at i:6539664 original size:15 final size:14
Alignment explanation
Indices: 6539644--6539677 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6539634 AAAGAGAATG
*
6539644 AAAAGAACAAAGAAA
1 AAAAGAA-AAAAAAA
6539659 AAAAGAAAAAAAAA
1 AAAAGAAAAAAAAA
6539673 AAAAG
1 AAAAG
6539678 GTGTTTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAA
Found at i:6541201 original size:13 final size:13
Alignment explanation
Indices: 6541172--6541218 Score: 57
Period size: 11 Copynumber: 3.9 Consensus size: 13
6541162 AATCTATTTA
6541172 AATATATTAAAAT
1 AATATATTAAAAT
6541185 --TATATTAAAAT
1 AATATATTAAAAT
*
6541196 AATATATAAAAAT
1 AATATATTAAAAT
6541209 AA-AT-TTAAAA
1 AATATATTAAAA
6541219 ATTTGATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 16 0.53
12 2 0.07
13 12 0.40
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATATATTAAAAT
Found at i:6541216 original size:24 final size:24
Alignment explanation
Indices: 6541172--6541218 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
6541162 AATCTATTTA
* *
6541172 AATATATTAAAATTATATTAAAAT
1 AATATATAAAAATAATATTAAAAT
6541196 AATATATAAAAATAA-ATTTAAAA
1 AATATATAAAAATAATA-TTAAAA
6541219 ATTTGATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
AATATATAAAAATAATATTAAAAT
Found at i:6541217 original size:12 final size:13
Alignment explanation
Indices: 6541172--6541220 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
6541162 AATCTATTTA
*
6541172 AATATATTAAAAT
1 AATATATAAAAAT
*
6541185 --TATATTAAAAT
1 AATATATAAAAAT
6541196 AATATATAAAAAT
1 AATATATAAAAAT
*
6541209 AA-ATTTAAAAAT
1 AATATATAAAAAT
6541221 TTGATAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 11 0.34
12 9 0.28
13 12 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
AATATATAAAAAT
Found at i:6541639 original size:15 final size:15
Alignment explanation
Indices: 6541618--6541658 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
6541608 ATTCAAATTT
6541618 TAATTTAAATAATCAA
1 TAATTTAAAT-ATCAA
6541634 -AATTTAAATATCAA
1 TAATTTAAATATCAA
6541648 TAACTTTAAAT
1 TAA-TTTAAAT
6541659 TTTAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.22
15 11 0.48
16 7 0.30
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATTTAAATATCAA
Found at i:6542081 original size:21 final size:22
Alignment explanation
Indices: 6542046--6542087 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
6542036 GACTGGATGG
*
6542046 TAAAATTAAAAATATATTAATGA
1 TAAAATT-AAAATATAATAATGA
6542069 TAAAATT-AAATATAATAAT
1 TAAAATTAAAATATAATAAT
6542088 TATGAGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
23 7 0.39
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
TAAAATTAAAATATAATAATGA
Found at i:6543438 original size:25 final size:25
Alignment explanation
Indices: 6543394--6543450 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
6543384 TTTTTTATTA
* * *
6543394 AAATATTTTTAATTATAATTATAAT
1 AAATTTTTTTAATCACAATTATAAT
*
6543419 AATTTTTTTTAATCACAATTATAAT
1 AAATTTTTTTAATCACAATTATAAT
6543444 AAATTTT
1 AAATTTT
6543451 ATTATTATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (25 bp):
AAATTTTTTTAATCACAATTATAAT
Found at i:6544194 original size:19 final size:21
Alignment explanation
Indices: 6544154--6544196 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
6544144 ATTAAATATA
*
6544154 TATAAAATATATAAAAATAAT
1 TATAAAATATATAAAAAAAAT
6544175 TATAAAAT-TA-AAAAAAAAT
1 TATAAAATATATAAAAAAAAT
6544194 TAT
1 TAT
6544197 TTATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.52
20 2 0.10
21 8 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
TATAAAATATATAAAAAAAAT
Found at i:6544650 original size:30 final size:30
Alignment explanation
Indices: 6544616--6544672 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
6544606 ATTATTATAT
**
6544616 TTTTAATAA-ATAAATTTTAAAAATTAAAAA
1 TTTTAA-AACATAAATAATAAAAATTAAAAA
6544646 TTTTAAAACATAAATAATAAAAATTAA
1 TTTTAAAACATAAATAATAAAAATTAA
6544673 CTTTCATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (30 bp):
TTTTAAAACATAAATAATAAAAATTAAAAA
Found at i:6544744 original size:22 final size:22
Alignment explanation
Indices: 6544700--6544744 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
6544690 ATAATTTTTA
6544700 ATTTTAAATTTACTCATTAATT
1 ATTTTAAATTTACTCATTAATT
*
6544722 ATTTTATAATTTACT-ATTCATT
1 ATTTTA-AATTTACTCATTAATT
6544744 A
1 A
6544745 ATAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTTTAAATTTACTCATTAATT
Found at i:6545434 original size:19 final size:21
Alignment explanation
Indices: 6545410--6545452 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
6545400 ATATAAAAAA
6545410 TTAATTTTTAATTA-AT-TAT
1 TTAATTTTTAATTATATATAT
*
6545429 TTAATTTTTTATTATATATAT
1 TTAATTTTTAATTATATATAT
6545450 TTA
1 TTA
6545453 TATAATGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.62
20 2 0.10
21 6 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TTAATTTTTAATTATATATAT
Found at i:6545725 original size:21 final size:20
Alignment explanation
Indices: 6545696--6545747 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
6545686 TTTATGAAAT
* *
6545696 AATTTTATTTATTTAATATA
1 AATTATATTTATTTAATAAA
* **
6545716 AATATATATTGATTTTTTAAA
1 AAT-TATATTTATTTAATAAA
6545737 AATTATATTTA
1 AATTATATTTA
6545748 AAAATTTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
AATTATATTTATTTAATAAA
Found at i:6545937 original size:22 final size:23
Alignment explanation
Indices: 6545892--6545938 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
6545882 TATATAAAAT
* * *
6545892 AAAAATAAATTATATCTTTCTTA
1 AAAAATAAACTATATCATTATTA
6545915 AAAAATAAACTATAT-ATTATTA
1 AAAAATAAACTATATCATTATTA
6545937 AA
1 AA
6545939 TGATAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAAATAAACTATATCATTATTA
Found at i:6546706 original size:9 final size:9
Alignment explanation
Indices: 6546694--6546723 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
6546684 ATTTTTAATT
6546694 ATAATTTAA
1 ATAATTTAA
6546703 ATAATTTAA
1 ATAATTTAA
6546712 AT-ATTTAA
1 ATAATTTAA
6546720 ATAA
1 ATAA
6546724 ATTCAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
ATAATTTAA
Found at i:6546771 original size:21 final size:23
Alignment explanation
Indices: 6546728--6546784 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 23
6546718 AAATAAATTC
6546728 AAAAATATCTAATTTATAATTAA
1 AAAAATATCTAATTTATAATTAA
* *
6546751 AAAAATATCTTATTT-T-TTTAA
1 AAAAATATCTAATTTATAATTAA
*
6546772 AAAATTATCTAAT
1 AAAAATATCTAAT
6546785 ATATCATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 15 0.50
22 1 0.03
23 14 0.47
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (23 bp):
AAAAATATCTAATTTATAATTAA
Found at i:6546922 original size:105 final size:105
Alignment explanation
Indices: 6546804--6547014 Score: 370
Period size: 105 Copynumber: 2.0 Consensus size: 105
6546794 AAAAGAATTG
6546804 TCTATATAAATATTCATACGATAAACTTTGTCTATGTATTTTATTATATAATATATATATATATA
1 TCTATATAAATATTCATACGATAAACTTTGTCTATGTATTTTATTATATAATATATATATATATA
6546869 TATATGTATATGGCCGTTTCAT-CGGTAGCCACAACCTTGT
66 TATATGTATATGGCCGTTTC-TGCGGTAGCCACAACCTTGT
* *
6546909 TCTATATAAATATTCATATGATAAATTTTGTCTATGTATTTTATTATATAATATATATATATATA
1 TCTATATAAATATTCATACGATAAACTTTGTCTATGTATTTTATTATATAATATATATATATATA
* *
6546974 TGTATGTATATGGCCGTTTCTGCGTTAGCCACAACCTTGT
66 TATATGTATATGGCCGTTTCTGCGGTAGCCACAACCTTGT
6547014 T
1 T
6547015 TACTCTCTTT
Statistics
Matches: 101, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
104 1 0.01
105 100 0.99
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (105 bp):
TCTATATAAATATTCATACGATAAACTTTGTCTATGTATTTTATTATATAATATATATATATATA
TATATGTATATGGCCGTTTCTGCGGTAGCCACAACCTTGT
Found at i:6565116 original size:25 final size:24
Alignment explanation
Indices: 6565087--6565145 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
6565077 ATTTGCATTT
6565087 CATTTGCATTATTTTGAAAAAAAGA
1 CATTTGCATTATTTT-AAAAAAAGA
* * *
6565112 CATTTTCATCATTTTAAGAAAAGA
1 CATTTGCATTATTTTAAAAAAAGA
* *
6565136 TACTTGCATT
1 CATTTGCATT
6565146 TCATGTGCAT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
24 14 0.52
25 13 0.48
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (24 bp):
CATTTGCATTATTTTAAAAAAAGA
Found at i:6565205 original size:62 final size:60
Alignment explanation
Indices: 6565069--6565206 Score: 188
Period size: 60 Copynumber: 2.3 Consensus size: 60
6565059 GGCATTTTTG
*
6565069 GAAAAGACATTTGCATTTCATTTGCATTATTTTGAAAAAAAGACATTTTCATCATTTTAA
1 GAAAAGACATTTGCATTTCATGTGCATTATTTTGAAAAAAAGACATTTTCATCATTTTAA
* * * *
6565129 GAAAAGATACTTGCATTTCATGTGCATTATTTT-AAGAAAAGACATTTGCATCGTCATTTTAA
1 GAAAAGACATTTGCATTTCATGTGCATTATTTTGAAAAAAAGACATTT---TCATCATTTTAA
*
6565191 GAGAAGACATTTGCAT
1 GAAAAGACATTTGCAT
6565207 CATAGTTGTG
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
59 13 0.19
60 30 0.45
62 24 0.36
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (60 bp):
GAAAAGACATTTGCATTTCATGTGCATTATTTTGAAAAAAAGACATTTTCATCATTTTAA
Found at i:6565670 original size:42 final size:42
Alignment explanation
Indices: 6565522--6565674 Score: 155
Period size: 42 Copynumber: 3.6 Consensus size: 42
6565512 AAAAAGTCAT
* ** * * *
6565522 TTGCATCTTCTCAATGATGATATCCGAGTGTTAAGGTTTGAA
1 TTGCATTTTCTCGGTGATGATATTCGAGTGTCAATGTTTGAA
* *
6565564 TTGCATCTTCTCGGTGATGATATCCGAGTGTCAATGTTTGAA
1 TTGCATTTTCTCGGTGATGATATTCGAGTGTCAATGTTTGAA
* * * *
6565606 TTACCTTTTCTCGGTGGTGATATTTGAGTGTCCAA-GTTTGAA
1 TTGCATTTTCTCGGTGATGATATTCGAGTGT-CAATGTTTGAA
* * *
6565648 TTGCATTTTTTCGATGACGATATTCGA
1 TTGCATTTTCTCGGTGATGATATTCGA
6565675 AGTCATTTGC
Statistics
Matches: 93, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 90 0.97
43 3 0.03
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (42 bp):
TTGCATTTTCTCGGTGATGATATTCGAGTGTCAATGTTTGAA
Found at i:6565744 original size:75 final size:75
Alignment explanation
Indices: 6565613--6566042 Score: 400
Period size: 75 Copynumber: 5.6 Consensus size: 75
6565603 GAATTACCTT
* ** * * *
6565613 TTCTCGGTGGTGATATTTGAGTGTCCAAGTTTGAATTGCATTTTTTCGATGACGATATTCGAAGT
1 TTCTCAGTGGTGATATCCGAGTGTCAAAGTTTGAATTGCATTTTTTTGATGGCGATATTCGAAGT
6565678 CATTTGCATA
66 CATTTGCATA
* *
6565688 TGCTCAGTGGTGATATCCGAGTGTCAAAGTTTGAATTACATTTTTTTGATGGCGATA-TCTGAAG
1 TTCTCAGTGGTGATATCCGAGTGTCAAAGTTTGAATTGCATTTTTTTGATGGCGATATTC-GAAG
6565752 TCATTTGCATA
65 TCATTTGCATA
* ** * ** * *
6565763 TTCTCGGTGGTGATATTTGAGTGTCCAAA-TTTGAATTGTATTTACTTGGTGGCGATATCCGAAG
1 TTCTCAGTGGTGATATCCGAGTGT-CAAAGTTTGAATTGCATTTTTTTGATGGCGATATTCGAAG
6565827 TCATTTGCATA
65 TCATTTGCATA
* * * * **
6565838 TTCTCTGTGGTGATATCCAAGTATTAAAGTTTGAATTGCATTTTCTTGGTGGTGATATCCGAGTA
1 TTCTCAGTGGTGATATCCGAGTGTCAAAGTTTGAATTGCA-TTT-TT--T--TGAT-GGCGA-TA
** * *
6565903 TTAAAAAAATTATTTGCATA
58 TT--CGAAGTCATTTGCATA
* * ** *
6565923 TTCTCAGTGGTGATATCTGAGTGTCAAAGTTTGAACTATATTTTTTTG-TGGTGATATTCGAAGT
1 TTCTCAGTGGTGATATCCGAGTGTCAAAGTTTGAATTGCATTTTTTTGATGGCGATATTCGAAGT
6565987 CATTTGCATA
66 CATTTGCATA
* * * *
6565997 TTCT-TGATGGTGATATCCGAGTGTTAAAGCTTGAATTTCATTTTTT
1 TTCTCAG-TGGTGATATCCGAGTGTCAAAGTTTGAATTGCATTTTTT
6566043 CAATGATGAT
Statistics
Matches: 283, Mismatches: 57, Indels: 31
0.76 0.15 0.08
Matches are distributed among these distances:
73 1 0.00
74 54 0.19
75 151 0.53
76 12 0.04
77 2 0.01
78 1 0.00
79 3 0.01
81 4 0.01
82 3 0.01
83 5 0.02
84 3 0.01
85 44 0.16
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.42
Consensus pattern (75 bp):
TTCTCAGTGGTGATATCCGAGTGTCAAAGTTTGAATTGCATTTTTTTGATGGCGATATTCGAAGT
CATTTGCATA
Found at i:6565895 original size:150 final size:152
Alignment explanation
Indices: 6565613--6566040 Score: 488
Period size: 150 Copynumber: 2.8 Consensus size: 152
6565603 GAATTACCTT
* * * *
6565613 TTCTCGGTGGTGATATTTGAGTGTCCAAGTTTGAATTGCATTTTTTCGATGACGATATTCGAAGT
1 TTCTCGGTGGTGATATTTGAGTGTCCAAATTTGAATTGTATTTTTT-GGTGGCGATATTCGAAGT
* * * *
6565678 CATTTGCATATGCTCAGTGGTGATATCCGAGTGTCAAAGTTTGAATTACATTTTTTTGATGGCGA
65 CATTTGCATATTCTCTGTGGTGATATCCGAGTGTTAAAGTTTGAATTACATTTTCTTGATGGCGA
* *
6565743 TAT-C-T-GAAGTCATTTGCATA
130 TATCCATAAAAATCATTTGCATA
* *
6565763 TTCTCGGTGGTGATATTTGAGTGTCCAAATTTGAATTGTATTTACTTGGTGGCGATATCCGAAGT
1 TTCTCGGTGGTGATATTTGAGTGTCCAAATTTGAATTGTATTT-TTTGGTGGCGATATTCGAAGT
* * * * *
6565828 CATTTGCATATTCTCTGTGGTGATATCCAAGTATTAAAGTTTGAATTGCATTTTCTTGGTGGTGA
65 CATTTGCATATTCTCTGTGGTGATATCCGAGTGTTAAAGTTTGAATTACATTTTCTTGATGGCGA
*
6565893 TATCCGAGTATTAAAAAAATTATTTGCATA
130 TATCC----A-T--AAAAATCATTTGCATA
* * * * * *
6565923 TTCTCAGTGGTGATATCTGAGTGT-CAAAGTTTGAACTATATTTTTTTGTGGTGATATTCGAAGT
1 TTCTCGGTGGTGATATTTGAGTGTCCAAA-TTTGAATTGTATTTTTTGGTGGCGATATTCGAAGT
* *
6565987 CATTTGCATATTCT-TGATGGTGATATCCGAGTGTTAAAGCTTGAATTTCATTTT
65 CATTTGCATATTCTCTG-TGGTGATATCCGAGTGTTAAAGTTTGAATTACATTTT
6566041 TTCAATGATG
Statistics
Matches: 235, Mismatches: 30, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
150 115 0.49
151 3 0.01
157 1 0.00
158 2 0.01
159 68 0.29
160 46 0.20
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (152 bp):
TTCTCGGTGGTGATATTTGAGTGTCCAAATTTGAATTGTATTTTTTGGTGGCGATATTCGAAGTC
ATTTGCATATTCTCTGTGGTGATATCCGAGTGTTAAAGTTTGAATTACATTTTCTTGATGGCGAT
ATCCATAAAAATCATTTGCATA
Found at i:6565934 original size:43 final size:42
Alignment explanation
Indices: 6565829--6565944 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 42
6565819 ATCCGAAGTC
* * **
6565829 ATTTGCATATTCTCTGTGGTGATATCCAAGTATTAAAGTTTG
1 ATTTGCATATTCTCAGTGGTGATATCCGAGTATTAAAAATTG
* * **
6565871 AATTGCATTTTCTTGGTGGTGATATCCGAGTATTAAAAAAATT-
1 ATTTGCATATTCTCAGTGGTGATATCCGAGTATT--AAAAATTG
*
6565914 ATTTGCATATTCTCAGTGGTGATATCTGAGT
1 ATTTGCATATTCTCAGTGGTGATATCCGAGT
6565945 GTCAAAGTTT
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 29 0.48
43 26 0.43
44 5 0.08
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (42 bp):
ATTTGCATATTCTCAGTGGTGATATCCGAGTATTAAAAATTG
Found at i:6566053 original size:159 final size:160
Alignment explanation
Indices: 6565754--6566060 Score: 415
Period size: 159 Copynumber: 1.9 Consensus size: 160
6565744 ATCTGAAGTC
* * * *
6565754 ATTTGCATATTCTCGGTGGTGATATTTGAGTGTCCAAATTTGAATTGTATTTACTTGGTGGCGAT
1 ATTTGCATATTCTCAGTGGTGATATCTGAGTGTCCAAATTTGAACTATATTTACTTGGTGGCGAT
*
6565819 ATCCGAAGTCATTTGCATATTCTCTGTGGTGATATCCAAGTATTAAAGTTTGAATTGCATTTTCT
66 ATCCGAAGTCATTTGCATATTCTCTGTGGTGATATCCAAGTATTAAAGCTTGAATTGCATTTTCT
** *
6565884 TGGTGGTGATATCCGAGTATTAAAAAAATT
131 TAATGATGATATCCGAGTATTAAAAAAATT
* * *
6565914 ATTTGCATATTCTCAGTGGTGATATCTGAGTGT-CAAAGTTTGAACTATATTT-TTTTGTGGTGA
1 ATTTGCATATTCTCAGTGGTGATATCTGAGTGTCCAAA-TTTGAACTATATTTACTTGGTGGCGA
* * * *
6565977 TATTCGAAGTCATTTGCATATTCT-TGATGGTGATATCCGAGTGTTAAAGCTTGAATTTCATTTT
65 TATCCGAAGTCATTTGCATATTCTCTG-TGGTGATATCCAAGTATTAAAGCTTGAATTGCATTTT
*
6566041 -TTCAATGATGATATCTGAGT
129 CTT-AATGATGATATCCGAGT
6566061 TTTTTTGGGT
Statistics
Matches: 128, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
158 4 0.03
159 81 0.63
160 43 0.34
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (160 bp):
ATTTGCATATTCTCAGTGGTGATATCTGAGTGTCCAAATTTGAACTATATTTACTTGGTGGCGAT
ATCCGAAGTCATTTGCATATTCTCTGTGGTGATATCCAAGTATTAAAGCTTGAATTGCATTTTCT
TAATGATGATATCCGAGTATTAAAAAAATT
Found at i:6566404 original size:50 final size:50
Alignment explanation
Indices: 6566241--6566623 Score: 417
Period size: 50 Copynumber: 7.8 Consensus size: 50
6566231 TCAATAGTTT
* * * * *
6566241 AATTTTAAAGTTGTTGAGTCTTTGTTTAGAGGAGTTTTTCAAAGATGA-G
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTCCAAGATGATG
* * *
6566290 AATTTTAAAGTTGTTGAGTCACTAT--TTAGAGGAGCTTTTTC-AGAT-A--
1 AATTTTAAAGTTGTTGAG-C-CTTTGCTTAGAGAAGCTTTTCCAAGATGATG
* * * * *
6566336 AATTTTTAAAATTGTTGAGCCTCTGCTTAAATAAACTTTTCCAAGATGATG
1 AA-TTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTCCAAGATGATG
* * **
6566387 AATTTTAAAGTTATTGAGCCTTTGCTTAGAGGAGCTTTTTTAAGATGA--
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTCCAAGATGATG
* * * *
6566435 ATTTTTAAAGTTGTTTAGCCTCTGTTTAGAGAAGCTTTTCCAAGATGATG
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTCCAAGATGATG
6566485 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGC-TTTCCTAAGATGATG
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTCC-AAGATGATG
* *
6566535 AATTTTAAAGTTGTTGAGCTTTTGCTTAGAGAAGCTTTCCCAAGATGATG
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTCCAAGATGATG
* * * *
6566585 AATTTTAAAATTATTGAGCCTTTGATTAAAGAAGCTTTT
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTT
6566624 TAATTTTTTT
Statistics
Matches: 280, Mismatches: 41, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
45 3 0.01
46 3 0.01
47 27 0.10
48 48 0.17
49 37 0.13
50 153 0.55
51 9 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (50 bp):
AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTCCAAGATGATG
Found at i:6566473 original size:98 final size:98
Alignment explanation
Indices: 6566243--6566624 Score: 448
Period size: 98 Copynumber: 3.9 Consensus size: 98
6566233 AATAGTTTAA
* * * * * * *
6566243 TTTTAAAGTTGTTGAGTCTTTGTTTAGAGGAGTTTTTCAAAGATGA-GAATTTTAAAGTTGTTGA
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCTTTTCCAAGATGATGAATTTTAAAGTTATTGA
* * * *
6566307 GTCACTAT--TTAGAGGAGC-TTTTTCAGATAAAT
66 G-C-CTTTGCTTAGAGAAGCTTTTTTAAGATGAAT
* * * *
6566339 TTTTAAAATTGTTGAGCCTCTGCTTAAATAAACTTTTCCAAGATGATGAATTTTAAAGTTATTGA
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCTTTTCCAAGATGATGAATTTTAAAGTTATTGA
*
6566404 GCCTTTGCTTAGAGGAGCTTTTTTAAGATGAAT
66 GCCTTTGCTTAGAGAAGCTTTTTTAAGATGAAT
* * *
6566437 TTTTAAAGTTGTTTAGCCTCTGTTTAGAGAAGCTTTTCCAAGATGATGAATTTTAAAGTTGTTGA
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCTTTTCCAAGATGATGAATTTTAAAGTTATTGA
** *
6566502 GCCTTTGCTTAGAGAAGCTTTCCTAAGATGATGAA
66 GCCTTTGCTTAGAGAAGCTTTTTTAAGATGA--AT
* * * *
6566537 TTTTAAAGTTGTTGAGCTTTTGCTTAGAGAAGCTTTCCCAAGATGATGAATTTTAAAATTATTGA
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCTTTTCCAAGATGATGAATTTTAAAGTTATTGA
* *
6566602 GCCTTTGATTAAAGAAGCTTTTT
66 GCCTTTGCTTAGAGAAGCTTTTT
6566625 AATTTTTTTT
Statistics
Matches: 244, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
95 3 0.01
96 37 0.15
97 28 0.11
98 98 0.40
100 78 0.32
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (98 bp):
TTTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCTTTTCCAAGATGATGAATTTTAAAGTTATTGA
GCCTTTGCTTAGAGAAGCTTTTTTAAGATGAAT
Found at i:6566534 original size:148 final size:147
Alignment explanation
Indices: 6566241--6566604 Score: 434
Period size: 148 Copynumber: 2.5 Consensus size: 147
6566231 TCAATAGTTT
* *
6566241 AATTTTAAAGTTGTTGAGTCTTTGTTTAGAGGAG-TTTTTCAAAGATGAGAATTTTAAAGTTGTT
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGGAGCTTTTTCAAAGATGAGAATTTTAAAGTTGTT
* * * *
6566305 GAGTCACTATTTAGAGGAGCTTTTTCAGATAAATTTTTAAAATTGTTGAGCCTCTGCTTAAATAA
66 GAGCCACTATTTAGAGAAGCTTTTCCAGATAAATTTTTAAAATTGTTGAGCCTCTGCTTAAAGAA
6566370 ACTTTTCCAAGATGATG
131 ACTTTTCCAAGATGATG
* * *
6566387 AATTTTAAAGTTATTGAGCCTTTGCTTAGAGGAGCTTTTT-TAAGATGA-ATTTTTAAAGTTGTT
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGGAGCTTTTTCAAAGATGAGAATTTTAAAGTTGTT
* * * * * *
6566450 TAGCCTCTGTTTAGAGAAGCTTTTCCAAGATGATGAA-TTTTAAAGTTGTTGAGCCTTTGCTTAG
66 GAGCCACTATTTAGAGAAGCTTTTCC-AGAT-A--AATTTTTAAAATTGTTGAGCCTCTGCTTAA
*
6566514 AGAAGC-TTTCCTAAGATGATG
127 AGAAACTTTTCC-AAGATGATG
* * * * * *
6566535 AATTTTAAAGTTGTTGAGCTTTTGCTTAGAGAAGC-TTTCCCAAGATGATGAATTTTAAAATTAT
1 AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGGAGCTTTTTCAAAGATGA-GAATTTTAAAGTTGT
6566599 TGAGCC
65 TGAGCC
6566605 TTTGATTAAA
Statistics
Matches: 184, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
145 34 0.18
146 42 0.23
147 14 0.08
148 76 0.41
149 2 0.01
150 16 0.09
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (147 bp):
AATTTTAAAGTTGTTGAGCCTTTGCTTAGAGGAGCTTTTTCAAAGATGAGAATTTTAAAGTTGTT
GAGCCACTATTTAGAGAAGCTTTTCCAGATAAATTTTTAAAATTGTTGAGCCTCTGCTTAAAGAA
ACTTTTCCAAGATGATG
Found at i:6567699 original size:11 final size:11
Alignment explanation
Indices: 6567683--6567728 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
6567673 TCAAGTAAAA
6567683 AAAATTTTTTT
1 AAAATTTTTTT
6567694 AAAATTTTTTT
1 AAAATTTTTTT
*
6567705 -TAATTTTTTT
1 AAAATTTTTTT
6567715 AAATATTATTTTT
1 AAA-ATT-TTTTT
6567728 A
1 A
6567729 TAATATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 9 0.30
11 12 0.40
12 3 0.10
13 6 0.20
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
AAAATTTTTTT
Found at i:6567711 original size:21 final size:22
Alignment explanation
Indices: 6567685--6567728 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
6567675 AAGTAAAAAA
*
6567685 AATTTTTTTAAA-ATTTTTTTT
1 AATTTTTTTAAATATTATTTTT
6567706 AATTTTTTTAAATATTATTTTT
1 AATTTTTTTAAATATTATTTTT
6567728 A
1 A
6567729 TAATATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
AATTTTTTTAAATATTATTTTT
Found at i:6569398 original size:13 final size:13
Alignment explanation
Indices: 6569380--6569404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6569370 TTTTTTGGTG
6569380 TTTTAAAATATTA
1 TTTTAAAATATTA
6569393 TTTTAAAATATT
1 TTTTAAAATATT
6569405 TCTAACAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTAAAATATTA
Found at i:6569435 original size:20 final size:20
Alignment explanation
Indices: 6569392--6569431 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
6569382 TTAAAATATT
*
6569392 ATTTTAAAATATTTCTAACA
1 ATTTTAAAATATTTCTAAAA
*
6569412 ATTTTAGAATATTT-TAAAA
1 ATTTTAAAATATTTCTAAAA
6569431 A
1 A
6569432 ATTTCTTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (20 bp):
ATTTTAAAATATTTCTAAAA
Found at i:6570710 original size:10 final size:10
Alignment explanation
Indices: 6570697--6570728 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
6570687 AAGATGCCAA
6570697 AAAAAAAAAG
1 AAAAAAAAAG
6570707 AAAAAAAAAG
1 AAAAAAAAAG
*
6570717 AAAAAAAGAG
1 AAAAAAAAAG
6570727 AA
1 AA
6570729 TAATAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:6570746 original size:7 final size:7
Alignment explanation
Indices: 6570727--6570764 Score: 53
Period size: 6 Copynumber: 5.6 Consensus size: 7
6570717 AAAAAAAGAG
6570727 AATAATAA
1 AATAAT-A
6570735 AATAATA
1 AATAATA
6570742 AATAATA
1 AATAATA
6570749 AA-AATA
1 AATAATA
6570755 AA-AATA
1 AATAATA
6570761 AATA
1 AATA
6570765 CAAAATGAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 12 0.41
7 11 0.38
8 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AATAATA
Found at i:6570759 original size:15 final size:15
Alignment explanation
Indices: 6570727--6570761 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
6570717 AAAAAAAGAG
6570727 AATAATAAAATAATA
1 AATAATAAAATAATA
6570742 AATAATAAAAATAA-A
1 AATAAT-AAAATAATA
6570757 AATAA
1 AATAA
6570762 ATACAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AATAATAAAATAATA
Found at i:6570764 original size:16 final size:17
Alignment explanation
Indices: 6570733--6570770 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
6570723 AGAGAATAAT
6570733 AAAATAATAAATAATA-
1 AAAATAATAAATAATAC
6570749 AAAATAA-AAATAAATAC
1 AAAATAATAAAT-AATAC
6570766 AAAAT
1 AAAAT
6570771 GAGTGTCTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.20
16 11 0.55
17 5 0.25
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAATAATAAATAATAC
Found at i:6574148 original size:19 final size:19
Alignment explanation
Indices: 6574124--6574161 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
6574114 ATAAAATGAT
* *
6574124 AAATATGAAAATGATATAA
1 AAATATAAAAATAATATAA
6574143 AAATATAAAAATAATATAA
1 AAATATAAAAATAATATAA
6574162 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26
Consensus pattern (19 bp):
AAATATAAAAATAATATAA
Found at i:6577012 original size:48 final size:44
Alignment explanation
Indices: 6576933--6577032 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 44
6576923 TTTTTATTTT
*
6576933 TTCATAAAAATTGATTTATAAAATTCTCCAATAGTTTAATAAAA
1 TTCATAAAAATTAATTTATAAAATTCTCCAATAGTTTAATAAAA
* ** *
6576977 TTCATAAAAATTTAAATTTATGAAAAATTTTCCAATAGTTTGGTAAGA
1 TTCATAAAAA-TT-AATTTAT--AAAATTCTCCAATAGTTTAATAAAA
6577025 TTCATAAA
1 TTCATAAA
6577033 TTTATTTTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 10 0.21
45 2 0.04
46 6 0.13
48 29 0.62
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.39
Consensus pattern (44 bp):
TTCATAAAAATTAATTTATAAAATTCTCCAATAGTTTAATAAAA
Found at i:6577987 original size:18 final size:18
Alignment explanation
Indices: 6577964--6577998 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6577954 CAAATTCTTA
*
6577964 ATTTTTTCCTTTTTATTT
1 ATTTTTACCTTTTTATTT
*
6577982 ATTTTTAGCTTTTTATT
1 ATTTTTACCTTTTTATT
6577999 AAAAAAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (18 bp):
ATTTTTACCTTTTTATTT
Found at i:6578769 original size:65 final size:63
Alignment explanation
Indices: 6578504--6578769 Score: 160
Period size: 65 Copynumber: 4.1 Consensus size: 63
6578494 AGTGATTAGG
* * * ** *
6578504 ATTAAACCGCAAGTC-AAAAAATAAATGGTTTAGGCT-AAGCCAGAATAAAAAATAAGTGATCGA
1 ATTAAACAGTAAGTCAAAAAAATAAAT-GATTAAACTGAA-CCAAAATAAAAAATAAGTGA-CGA
*
6578567 G
63 A
* ** * * ** * * *
6578568 ATTGAATTGTAAGTCAAAAAAATAAATGATTTGAACTGAGCCAAGGTAAAAAATGATTGACCAA
1 ATTAAACAGTAAGTCAAAAAAATAAATGA-TTAAACTGAACCAAAATAAAAAATAAGTGACGAA
* * * ** * * *
6578632 GATTAAACCA-CAAGTTAAAAAAATAAATGATAAAGACCAAACCAAAACAAAAAGTAAGTGACTA
1 -ATTAAA-CAGTAAGTCAAAAAAATAAATGATTAA-ACTGAACCAAAATAAAAAATAAGTGACGA
*
6578696 GG
63 -A
* * *
6578698 ACTAAACAGTGAGTCAAAAAAATAAATGATCTAAACTGAATCAAAATAAAAAATAAGTGATCGAA
1 ATTAAACAGTAAGTCAAAAAAATAAATGAT-TAAACTGAACCAAAATAAAAAATAAGTGA-CGAA
6578763 ATTAAAC
1 ATTAAAC
6578770 CACAAGTTAG
Statistics
Matches: 145, Mismatches: 47, Indels: 19
0.69 0.22 0.09
Matches are distributed among these distances:
64 18 0.12
65 122 0.84
66 5 0.03
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (63 bp):
ATTAAACAGTAAGTCAAAAAAATAAATGATTAAACTGAACCAAAATAAAAAATAAGTGACGAA
Found at i:6587477 original size:24 final size:24
Alignment explanation
Indices: 6587446--6587493 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
6587436 ATAGAGGGTC
6587446 AACAACATCATATAAAATATCTTA
1 AACAACATCATATAAAATATCTTA
*
6587470 AACAACATCATATGAAATATCTTA
1 AACAACATCATATAAAATATCTTA
6587494 TTTGACCGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.29
Consensus pattern (24 bp):
AACAACATCATATAAAATATCTTA
Found at i:6591193 original size:16 final size:16
Alignment explanation
Indices: 6591169--6591199 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6591159 TAGTTTGGTA
*
6591169 AAATTTATAAAAAATC
1 AAATCTATAAAAAATC
6591185 AAATCTATAAAAAAT
1 AAATCTATAAAAAAT
6591200 ACTCCAATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATCTATAAAAAATC
Found at i:6594204 original size:2 final size:2
Alignment explanation
Indices: 6594197--6594223 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6594187 GATTCAAATT
6594197 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6594224 TTGTGACAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6594707 original size:16 final size:16
Alignment explanation
Indices: 6594686--6594734 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
6594676 TTTTTAATTT
*
6594686 TATATTTATTTTTATA
1 TATATTTATATTTATA
*
6594702 TATATTTATATATATA
1 TATATTTATATTTATA
* *
6594718 TAAATTGATATTTATA
1 TATATTTATATTTATA
6594734 T
1 T
6594735 TAAAAATAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
TATATTTATATTTATA
Found at i:6595070 original size:28 final size:28
Alignment explanation
Indices: 6595039--6595097 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
6595029 TATGTAATTC
* * *
6595039 ATATGTATAATTTTAAAATAAAAATTAT
1 ATATGTAAAAATTTAAAATAAAAATCAT
6595067 ATATGTAAAAATTTAAAATAAAAATCAT
1 ATATGTAAAAATTTAAAATAAAAATCAT
6595095 ATA
1 ATA
6595098 AAAATAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (28 bp):
ATATGTAAAAATTTAAAATAAAAATCAT
Found at i:6595202 original size:27 final size:27
Alignment explanation
Indices: 6595140--6595207 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 27
6595130 TTTTTATTTT
* ** *
6595140 TTTATATATAAATAAATTCATATATAA
1 TTTATATATATATAAATAAATAAATAA
* * *
6595167 TTCACATATATATATATAAATAAATAA
1 TTTATATATATATAAATAAATAAATAA
6595194 TTTATATAT-TATAA
1 TTTATATATATATAA
6595208 TTTAGATCAA
Statistics
Matches: 31, Mismatches: 10, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (27 bp):
TTTATATATATATAAATAAATAAATAA
Found at i:6596535 original size:11 final size:11
Alignment explanation
Indices: 6596519--6596569 Score: 93
Period size: 11 Copynumber: 4.6 Consensus size: 11
6596509 GAGGTCTTCA
*
6596519 TTGCTGAATGT
1 TTGCTGAATAT
6596530 TTGCTGAATAT
1 TTGCTGAATAT
6596541 TTGCTGAATAT
1 TTGCTGAATAT
6596552 TTGCTGAATAT
1 TTGCTGAATAT
6596563 TTGCTGA
1 TTGCTGA
6596570 TGGCATATGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
11 39 1.00
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.45
Consensus pattern (11 bp):
TTGCTGAATAT
Found at i:6596695 original size:106 final size:106
Alignment explanation
Indices: 6596558--6596777 Score: 422
Period size: 106 Copynumber: 2.1 Consensus size: 106
6596548 ATATTTGCTG
* *
6596558 AATATTTGCTGATGGCATATGTTAAAGAAGATATAAATATCGGGGGAGGTTTAAAATATGGATTT
1 AATATGTGCTGATGGCATATGTTAAAGAAGATATAAATATCCGGGGAGGTTTAAAATATGGATTT
6596623 AAAGCAGAAAGGTTGTGTTTTTTTGGGCTCTTTAGGGTTTT
66 AAAGCAGAAAGGTTGTGTTTTTTTGGGCTCTTTAGGGTTTT
6596664 AATATGTGCTGATGGCATATGTTAAAGAAGATATAAATATCCGGGGAGGTTTAAAATATGGATTT
1 AATATGTGCTGATGGCATATGTTAAAGAAGATATAAATATCCGGGGAGGTTTAAAATATGGATTT
6596729 AAAGCAGAAAGGTTGTGTTTTTTTGGGCTCTTTAGGGTTTT
66 AAAGCAGAAAGGTTGTGTTTTTTTGGGCTCTTTAGGGTTTT
6596770 AATATGTG
1 AATATGTG
6596778 TTTATAGCTT
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.37
Consensus pattern (106 bp):
AATATGTGCTGATGGCATATGTTAAAGAAGATATAAATATCCGGGGAGGTTTAAAATATGGATTT
AAAGCAGAAAGGTTGTGTTTTTTTGGGCTCTTTAGGGTTTT
Found at i:6604985 original size:18 final size:17
Alignment explanation
Indices: 6604964--6604998 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6604954 TTTTATTCAG
6604964 ATAATTATAATCTTTTAT
1 ATAATTATAAT-TTTTAT
*
6604982 ATAATTATGATTTTTAT
1 ATAATTATAATTTTTAT
6604999 GAATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (17 bp):
ATAATTATAATTTTTAT
Found at i:6605106 original size:25 final size:24
Alignment explanation
Indices: 6605077--6605126 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
6605067 TATAAATAAA
6605077 ATTAAT-ATAAAAATTAATTTTATTT
1 ATTAATAATAAAAATT--TTTTATTT
*
6605102 ATTAATAATTAAAATTTTTTATTT
1 ATTAATAATAAAAATTTTTTATTT
6605126 A
1 A
6605127 ATATAAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 9 0.39
25 6 0.26
26 8 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
ATTAATAATAAAAATTTTTTATTT
Found at i:6607557 original size:21 final size:21
Alignment explanation
Indices: 6607533--6607590 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
6607523 TTAAAATCAC
*
6607533 TAAAATTTAAAATTTTATTAT
1 TAAAATTTAAAATTTTATTAA
* *
6607554 TAAAATTAAGAAATTTTTTTAA
1 TAAAATTTA-AAATTTTATTAA
*
6607576 TAAAATATTATAATT
1 TAAAAT-TTAAAATT
6607591 CGTATCATCA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 20 0.67
23 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TAAAATTTAAAATTTTATTAA
Found at i:6607689 original size:13 final size:13
Alignment explanation
Indices: 6607671--6607711 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
6607661 TTAAATTATA
6607671 TTATTTTTATATT
1 TTATTTTTATATT
*
6607684 TTA-TTTTA-ATA
1 TTATTTTTATATT
*
6607695 TTATATTTATATT
1 TTATTTTTATATT
6607708 TTAT
1 TTAT
6607712 CATTATATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 5 0.22
12 9 0.39
13 9 0.39
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTATATT
Found at i:6607703 original size:24 final size:23
Alignment explanation
Indices: 6607654--6607726 Score: 92
Period size: 24 Copynumber: 3.1 Consensus size: 23
6607644 ATAATAATTA
* *
6607654 TTATATTTTAAATTATATTATTT
1 TTATATTTTATATTATATTATAT
*
6607677 TTATATTTTATTTTAATATTATAT
1 TTATATTTTATATT-ATATTATAT
*
6607701 TTATATTTTATCATTATATCATAT
1 TTATATTTTAT-ATTATATTATAT
6607725 TT
1 TT
6607727 TAAATTATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
23 12 0.28
24 29 0.67
25 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (23 bp):
TTATATTTTATATTATATTATAT
Found at i:6607717 original size:13 final size:12
Alignment explanation
Indices: 6607652--6607719 Score: 61
Period size: 11 Copynumber: 5.7 Consensus size: 12
6607642 ATATAATAAT
6607652 TATTATATTTTA
1 TATTATATTTTA
*
6607664 AATTATATTATT-
1 TATTATATT-TTA
6607676 T-TTATATTTTA
1 TATTATATTTTA
* *
6607687 TTTTA-ATATTA
1 TATTATATTTTA
6607698 TATTTATATTTTA
1 TA-TTATATTTTA
6607711 TCATTATAT
1 T-ATTATAT
6607720 CATATTTTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
10 2 0.04
11 14 0.31
12 14 0.31
13 14 0.31
14 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTATATTTTA
Found at i:6608742 original size:2 final size:2
Alignment explanation
Indices: 6608735--6608770 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6608725 AAAACAAACC
6608735 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
6608771 TATATATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:6623966 original size:2 final size:2
Alignment explanation
Indices: 6623959--6623993 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6623949 CCTCTGAATC
6623959 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6623994 AAATATGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6624455 original size:18 final size:18
Alignment explanation
Indices: 6624434--6624471 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6624424 TAGTTATAAA
6624434 AAATTA-CAAACTTATATC
1 AAATTATCAAACTTAT-TC
*
6624452 AAATTATCAATCTTATTC
1 AAATTATCAAACTTATTC
6624470 AA
1 AA
6624472 CAATCTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATTATCAAACTTATTC
Found at i:6625344 original size:46 final size:46
Alignment explanation
Indices: 6625293--6625407 Score: 131
Period size: 46 Copynumber: 2.5 Consensus size: 46
6625283 TAATAATCAT
* * *
6625293 TTTTTTTAAAAATTTTTTTTTTTATAAGTCAAATTTATCTATTAAAAT
1 TTTTTTTAAAAA--TTTTTTTTTACAAGTCAAATTTATATATTAAAAA
* * *
6625341 TTTTTTTTATAATTTTTTTTTACAAGTTAAATTTATATATTAAAAA
1 TTTTTTTAAAAATTTTTTTTTACAAGTCAAATTTATATATTAAAAA
***
6625387 TTTTTTTTTTAATTTTTTTTT
1 TTTTTTTAAAAATTTTTTTTT
6625408 GTAAGTCTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 50 0.83
48 10 0.17
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (46 bp):
TTTTTTTAAAAATTTTTTTTTACAAGTCAAATTTATATATTAAAAA
Found at i:6625356 original size:13 final size:13
Alignment explanation
Indices: 6625338--6625362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6625328 TATCTATTAA
6625338 AATTTTTTTTTAT
1 AATTTTTTTTTAT
6625351 AATTTTTTTTTA
1 AATTTTTTTTTA
6625363 CAAGTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
AATTTTTTTTTAT
Found at i:6625454 original size:11 final size:11
Alignment explanation
Indices: 6625438--6625467 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
6625428 AATATATCTG
6625438 ATAAATCTTAA
1 ATAAATCTTAA
*
6625449 ATAAATTTTAA
1 ATAAATCTTAA
6625460 ATAAATCT
1 ATAAATCT
6625468 CGAAATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (11 bp):
ATAAATCTTAA
Found at i:6631014 original size:38 final size:38
Alignment explanation
Indices: 6630963--6631039 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
6630953 ATGTAGAAGA
*
6630963 TAGCATTCTATTCTATATCTATGCTTCCCATCTTCCCT
1 TAGCATTCTATTCTATATCCATGCTTCCCATCTTCCCT
*
6631001 TAGCATTCTATTCTATATCCATGTTTCCCATCTTCCCT
1 TAGCATTCTATTCTATATCCATGCTTCCCATCTTCCCT
6631039 T
1 T
6631040 TTCCTAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.18, C:0.31, G:0.05, T:0.45
Consensus pattern (38 bp):
TAGCATTCTATTCTATATCCATGCTTCCCATCTTCCCT
Found at i:6636905 original size:2 final size:2
Alignment explanation
Indices: 6636898--6636925 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6636888 ACGTAGCTCA
6636898 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
6636926 GCTGCACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:6637213 original size:3 final size:3
Alignment explanation
Indices: 6637205--6637241 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
6637195 ATCTTCCTAC
6637205 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
6637242 TATTTTCCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:6637633 original size:28 final size:27
Alignment explanation
Indices: 6637575--6637639 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
6637565 GTAAAATATT
* * *
6637575 TTAAGTAATATTTAAATTTAAATTTTT
1 TTAATTAATACTTAAATTTAAATTTTA
6637602 TTAATATAATACTTAAATTATAAA-TTTA
1 TTAAT-TAATACTTAAATT-TAAATTTTA
6637630 TTAATTAATA
1 TTAATTAATA
6637640 TGATATTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 9 0.27
28 20 0.61
29 4 0.12
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
TTAATTAATACTTAAATTTAAATTTTA
Found at i:6639852 original size:5 final size:5
Alignment explanation
Indices: 6639839--6639872 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
6639829 ACCACTTCCA
*
6639839 AAAAA AAAAG AAAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG AAA
6639873 GAGAGTTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:6639858 original size:11 final size:11
Alignment explanation
Indices: 6639838--6639872 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
6639828 CACCACTTCC
*
6639838 AAAAAAAAAAG
1 AAAAAGAAAAG
6639849 AAAAAGAAAAG
1 AAAAAGAAAAG
6639860 -AAAAGAAAAG
1 AAAAAGAAAAG
6639870 AAA
1 AAA
6639873 GAGAGTTGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:6639858 original size:15 final size:15
Alignment explanation
Indices: 6639839--6639872 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
6639829 ACCACTTCCA
*
6639839 AAAAAAAAAGAAAAAG
1 AAAAGAAAAG-AAAAG
6639855 AAAAGAAAAGAAAAG
1 AAAAGAAAAGAAAAG
6639870 AAA
1 AAA
6639873 GAGAGTTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAGAAAAG
Found at i:6640190 original size:11 final size:11
Alignment explanation
Indices: 6640174--6640203 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
6640164 CCACCACTTC
6640174 AAAAAGAAAAG
1 AAAAAGAAAAG
6640185 AAAAAGAAAAG
1 AAAAAGAAAAG
6640196 -AAAAGAAA
1 AAAAAGAAA
6640204 GAGAGTTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:6640360 original size:332 final size:332
Alignment explanation
Indices: 6639702--6640684 Score: 1878
Period size: 332 Copynumber: 2.9 Consensus size: 332
6639692 AGAGGATGCA
*
6639702 TTCCCCAGGTAAAATTTTTATTAAACCTACCTAACAAGTCAAAACCCTATTCTCTTGCATACTTT
1 TTCCCCAGGTAAAATTTTTATTAAACCTACCTAACAAGTCAAAATCCTATTCTCTTGCATACTTT
*
6639767 TTGTAACCATTATCACCGACTTCCAAATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACC
66 TTGCAACCATTATCACCGACTTCCAAATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACC
6639832 ACTTCCAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAAGAAAGAGAGTTGGAAAACTAAGTGCAG-
131 ACTT-CAAAAAAAAAAG----A-AAAAGAAAAGAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGA
6639896 AAAATAAAATAGGGCAACGTGGGAGGGCCTTCAACACAAGAGCCTAACATGAAAAAATAAAGGCA
190 AAAATAAAATAGGGCAACGTGGGAGGGCCTTCAACACAAGAGCCTAACATGAAAAAATAAAGGCA
6639961 AAAGAAATAAAGAGTTTATTGCACATCAGTTTTCAAAATAAGCAGCAACTAACCATATAAGATCT
255 AAAGAAATAAAGAGTTTATTGCACATCAGTTTTCAAAATAAGCAGCAACTAACCATATAAGATCT
6640026 TCTATTAGTCTCC
320 TCTATTAGTCTCC
6640039 TTCCCCAGGTAAAATTTTTATTAAACCTACCTAACAAGTCAAAATCCTATTCTCTTGCATACTTT
1 TTCCCCAGGTAAAATTTTTATTAAACCTACCTAACAAGTCAAAATCCTATTCTCTTGCATACTTT
6640104 TTGCAACCATTATCACCGACTTCCAAATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACC
66 TTGCAACCATTATCACCGACTTCCAAATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACC
*
6640169 ACTTCAAAAAGAAAAGAAAAAGAAAAGAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATA
131 ACTTCAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATA
6640234 AAATAGGGCAACGTGGGAGGGCCTTCAACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAA
196 AAATAGGGCAACGTGGGAGGGCCTTCAACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAA
6640299 ATAAAGAGTTTATTGCACATCAGTTTTCAAAATAAGCAGCAACTAACCATATAAGATCTTCTATT
261 ATAAAGAGTTTATTGCACATCAGTTTTCAAAATAAGCAGCAACTAACCATATAAGATCTTCTATT
6640364 AGTCTCC
326 AGTCTCC
6640371 TTCCCCAGGTAAAATTTTTATTAAACCTACCTAACAAGTCAAAATCCTATTCTCTTGCATACTTT
1 TTCCCCAGGTAAAATTTTTATTAAACCTACCTAACAAGTCAAAATCCTATTCTCTTGCATACTTT
6640436 TTGCAACCATTATCACCGACTTCCAAATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACC
66 TTGCAACCATTATCACCGACTTCCAAATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACC
6640501 ACTTCAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATA
131 ACTTCAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATA
6640566 AAATAGGGCAACGTGGGAGGGCCTTCAACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAA
196 AAATAGGGCAACGTGGGAGGGCCTTCAACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAA
6640631 ATAAAGAGTTTATTGCACATCAGTTTTCAAAATAAGCAGCAACTAACCATATAA
261 ATAAAGAGTTTATTGCACATCAGTTTTCAAAATAAGCAGCAACTAACCATATAA
6640685 CATGAACTAA
Statistics
Matches: 641, Mismatches: 4, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
331 41 0.06
332 457 0.71
336 11 0.02
337 132 0.21
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.22
Consensus pattern (332 bp):
TTCCCCAGGTAAAATTTTTATTAAACCTACCTAACAAGTCAAAATCCTATTCTCTTGCATACTTT
TTGCAACCATTATCACCGACTTCCAAATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACC
ACTTCAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATA
AAATAGGGCAACGTGGGAGGGCCTTCAACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAA
ATAAAGAGTTTATTGCACATCAGTTTTCAAAATAAGCAGCAACTAACCATATAAGATCTTCTATT
AGTCTCC
Found at i:6640852 original size:224 final size:224
Alignment explanation
Indices: 6640462--6640908 Score: 894
Period size: 224 Copynumber: 2.0 Consensus size: 224
6640452 CGACTTCCAA
6640462 ATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACCACTTCAAAAAAAAAAGAAAAAGAAAA
1 ATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACCACTTCAAAAAAAAAAGAAAAAGAAAA
6640527 GAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATAAAATAGGGCAACGTGGGAGGGCCTTC
66 GAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATAAAATAGGGCAACGTGGGAGGGCCTTC
6640592 AACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAAATAAAGAGTTTATTGCACATCAGTTT
131 AACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAAATAAAGAGTTTATTGCACATCAGTTT
6640657 TCAAAATAAGCAGCAACTAACCATATAAC
196 TCAAAATAAGCAGCAACTAACCATATAAC
6640686 ATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACCACTTCAAAAAAAAAAGAAAAAGAAAA
1 ATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACCACTTCAAAAAAAAAAGAAAAAGAAAA
6640751 GAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATAAAATAGGGCAACGTGGGAGGGCCTTC
66 GAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATAAAATAGGGCAACGTGGGAGGGCCTTC
6640816 AACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAAATAAAGAGTTTATTGCACATCAGTTT
131 AACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAAATAAAGAGTTTATTGCACATCAGTTT
6640881 TCAAAATAAGCAGCAACTAACCATATAA
196 TCAAAATAAGCAGCAACTAACCATATAA
6640909 GATCTTCTAT
Statistics
Matches: 223, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
224 223 1.00
ACGTcount: A:0.48, C:0.19, G:0.17, T:0.16
Consensus pattern (224 bp):
ATGAACTAAATCCCTTTCCCGCAACCCCCCAACGCCACCACTTCAAAAAAAAAAGAAAAAGAAAA
GAAAAGAAAGAGAGTTGGAAAACTAAGTGCAGAAAAATAAAATAGGGCAACGTGGGAGGGCCTTC
AACACAAGAGCCTAACATGAAAAAATAAAGGCAAAAGAAATAAAGAGTTTATTGCACATCAGTTT
TCAAAATAAGCAGCAACTAACCATATAAC
Found at i:6643291 original size:18 final size:18
Alignment explanation
Indices: 6643268--6643302 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6643258 TCGGTCATGA
6643268 TCATAATAACGATCACGG
1 TCATAATAACGATCACGG
*
6643286 TCATAATCACGATCACG
1 TCATAATAACGATCACG
6643303 ATTGCGGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (18 bp):
TCATAATAACGATCACGG
Found at i:6643303 original size:24 final size:24
Alignment explanation
Indices: 6643243--6643304 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 24
6643233 TATCACGACG
* * * *
6643243 ATCACGTTCTCGATCTCGGTCATG
1 ATCACGATCACGATCACGGTCATA
** *
6643267 ATCATAATAACGATCACGGTCATA
1 ATCACGATCACGATCACGGTCATA
6643291 ATCACGATCACGAT
1 ATCACGATCACGAT
6643305 TGCGGTCACG
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (24 bp):
ATCACGATCACGATCACGGTCATA
Found at i:6647859 original size:29 final size:28
Alignment explanation
Indices: 6647802--6647861 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
6647792 GATAGTTTGG
6647802 TTTTAAAAAATATTTTTTGTTTAATTTT
1 TTTTAAAAAATATTTTTTGTTTAATTTT
* *
6647830 TATTTAAAAAATATTTTTATTTTTTATTTT
1 T-TTTAAAAAATATTTTT-TGTTTAATTTT
6647860 TT
1 TT
6647862 GAAAAATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 1 0.04
29 17 0.61
30 10 0.36
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (28 bp):
TTTTAAAAAATATTTTTTGTTTAATTTT
Found at i:6647975 original size:23 final size:24
Alignment explanation
Indices: 6647922--6647986 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 24
6647912 AATAAATAAA
*
6647922 ATATTTAATAATATTACTATTAATAT
1 ATATTTAAT--TATTAATATTAATAT
6647948 A-ATTTAATTATTAATA-TAATAT
1 ATATTTAATTATTAATATTAATAT
6647970 ATATTT-ATTAATTAATA
1 ATATTTAATT-ATTAATA
6647987 ATATTAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
22 10 0.28
23 18 0.50
25 7 0.19
26 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
ATATTTAATTATTAATATTAATAT
Found at i:6647979 original size:19 final size:19
Alignment explanation
Indices: 6647939--6647991 Score: 69
Period size: 17 Copynumber: 3.0 Consensus size: 19
6647929 ATAATATTAC
*
6647939 TATTAATATAAT-T-TAAT
1 TATTAATATAATATATATT
6647956 TATTAATATAATATATATT
1 TATTAATATAATATATATT
6647975 TATTAAT-TAATA-ATATT
1 TATTAATATAATATATATT
6647992 AAAAAGTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
17 17 0.52
18 6 0.18
19 10 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTAATATAATATATATT
Found at i:6648229 original size:29 final size:29
Alignment explanation
Indices: 6648196--6648254 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
6648186 TTTTCTGAAA
*
6648196 CTAAACACTACTTAATCTTTAAGTCGTCG
1 CTAAACACTACTTAATCTCTAAGTCGTCG
6648225 CTAAACACTACTTAATCTCTAAGTCGTCG
1 CTAAACACTACTTAATCTCTAAGTCGTCG
6648254 C
1 C
6648255 AACAAATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.32
Consensus pattern (29 bp):
CTAAACACTACTTAATCTCTAAGTCGTCG
Found at i:6648781 original size:22 final size:22
Alignment explanation
Indices: 6648756--6648798 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6648746 AAGGTAAAAA
*
6648756 TTTTAAATTTTAA-ATTATTATT
1 TTTTAAAATTTAATATT-TTATT
6648778 TTTTAAAATTTAATATTTTAT
1 TTTTAAAATTTAATATTTTAT
6648799 CAATAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTAAAATTTAATATTTTATT
Found at i:6652455 original size:2 final size:2
Alignment explanation
Indices: 6652448--6652478 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6652438 ATACAGTTAT
6652448 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
6652479 AATTATAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6653991 original size:2 final size:2
Alignment explanation
Indices: 6653984--6654009 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6653974 AGGTGTCAAT
6653984 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
6654010 AGAGAGAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:6654014 original size:2 final size:2
Alignment explanation
Indices: 6654009--6654038 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
6653999 GTGTGTGTGT
*
6654009 GA GA GA GA GA GA GA GA GA GA GA AA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
6654039 TAGACCTCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6661535 original size:2 final size:2
Alignment explanation
Indices: 6661528--6661552 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6661518 CAGAAGACGT
6661528 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6661553 TTGAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6667691 original size:3 final size:3
Alignment explanation
Indices: 6667683--6667731 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
6667673 CTCATGTATT
* * *
6667683 TCA TCA TCA TCA TCA TTAA T-A TCA TCG TCA TTA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA -TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
6667728 TCA T
1 TCA T
6667732 TATTTTTTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.90
4 2 0.05
ACGTcount: A:0.33, C:0.27, G:0.02, T:0.39
Consensus pattern (3 bp):
TCA
Found at i:6667706 original size:15 final size:15
Alignment explanation
Indices: 6667685--6667728 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
6667675 CATGTATTTC
6667685 ATCATCATCATCATT
1 ATCATCATCATCATT
*
6667700 AAT-ATCATCGTCATT
1 -ATCATCATCATCATT
6667715 ATCATCATCATCAT
1 ATCATCATCATCAT
6667729 CATTATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 2 0.08
15 21 0.84
16 2 0.08
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (15 bp):
ATCATCATCATCATT
Found at i:6675053 original size:22 final size:22
Alignment explanation
Indices: 6675026--6675078 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
6675016 GGCATAGTTT
*
6675026 TAAATAATTATAAAGAAAATGTA
1 TAAATAAATATAAAGAAAAT-TA
*
6675049 -AAATAAATATAATGAAAATTA
1 TAAATAAATATAAAGAAAATTA
6675070 TAAATAAAT
1 TAAATAAAT
6675079 TGTTATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (22 bp):
TAAATAAATATAAAGAAAATTA
Found at i:6675181 original size:6 final size:7
Alignment explanation
Indices: 6675155--6675189 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
6675145 TGATATATAA
6675155 AAAATTT
1 AAAATTT
6675162 AAAATTT
1 AAAATTT
6675169 AAAATTT
1 AAAATTT
*
6675176 AAATTTT
1 AAAATTT
*
6675183 AAGATTT
1 AAAATTT
6675190 GTAATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (7 bp):
AAAATTT
Found at i:6675823 original size:6 final size:6
Alignment explanation
Indices: 6675812--6675838 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
6675802 TTTTCCTCTT
6675812 TGTTTC TGTTTC TGTTTC TGTTTC TGT
1 TGTTTC TGTTTC TGTTTC TGTTTC TGT
6675839 CTTTGTCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.19, T:0.67
Consensus pattern (6 bp):
TGTTTC
Found at i:6679819 original size:30 final size:30
Alignment explanation
Indices: 6679779--6679881 Score: 129
Period size: 30 Copynumber: 3.4 Consensus size: 30
6679769 GATTTATGTT
6679779 AAGGACTTATTTAGG-TACAAATTAAAGGTTA
1 AAGG-CTTATTT-GGATACAAATTAAAGGTTA
* *
6679810 AAGGTTTATTTGGATACAAATTAAAGGAT-
1 AAGGCTTATTTGGATACAAATTAAAGGTTA
* * *
6679839 AATGCTTATTTGGCTACAAATTAAAGTTTA
1 AAGGCTTATTTGGATACAAATTAAAGGTTA
6679869 AAGGCTTATTTGG
1 AAGGCTTATTTGG
6679882 GTGCAATAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
29 26 0.42
30 32 0.52
31 4 0.06
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (30 bp):
AAGGCTTATTTGGATACAAATTAAAGGTTA
Found at i:6689788 original size:2 final size:2
Alignment explanation
Indices: 6689763--6689802 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
6689753 ATGTAAAGAA
* * *
6689763 AT AT AT AA AT AT AA AT AT AA AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6689803 CTATTTTCCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:6689798 original size:12 final size:12
Alignment explanation
Indices: 6689763--6689802 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
6689753 ATGTAAAGAA
6689763 ATATATAAATAT
1 ATATATAAATAT
*
6689775 AAATATAAATAT
1 ATATATAAATAT
*
6689787 ATATATATATAT
1 ATATATAAATAT
6689799 ATAT
1 ATAT
6689803 CTATTTTCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:6695309 original size:120 final size:118
Alignment explanation
Indices: 6695183--6695420 Score: 365
Period size: 120 Copynumber: 2.0 Consensus size: 118
6695173 TGCAATTACT
* *
6695183 TTTTTTAATATTTAAAATAATT-A-TTTTTATTTTTTAGTAA-CTTTTAAATATTTAATATTTCA
1 TTTTTTAATATTTAAAAT-ATTAATTTTTTA-TTTTTAATAATC-TTTAAATATATAATATTTCA
*
6695245 CCCACATAATGGGTGTGCATAAAATAAATTTTTAATAAGTGTCTATAAACATTTATCA
63 CCCACATAATGGATGTGCATAAAATAAATTTTTAAT--GTGTCTATAAACATTTATCA
6695303 TTTTTTAATATTTAAAATATTAATTTTTTATTTTTAATAATCTTTAAATATATAATATTTCACCC
1 TTTTTTAATATTTAAAATATTAATTTTTTATTTTTAATAATCTTTAAATATATAATATTTCACCC
* *
6695368 ACGTAATGGATGTGCATAGAATAAATTTTTAATGTGTCTATAAACATTTATCA
66 ACATAATGGATGTGCATAAAATAAATTTTTAATGTGTCTATAAACATTTATCA
6695421 ATTAATGGGA
Statistics
Matches: 110, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
118 20 0.18
119 3 0.03
120 80 0.73
121 7 0.06
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.47
Consensus pattern (118 bp):
TTTTTTAATATTTAAAATATTAATTTTTTATTTTTAATAATCTTTAAATATATAATATTTCACCC
ACATAATGGATGTGCATAAAATAAATTTTTAATGTGTCTATAAACATTTATCA
Found at i:6702124 original size:13 final size:12
Alignment explanation
Indices: 6702084--6702149 Score: 77
Period size: 12 Copynumber: 5.8 Consensus size: 12
6702074 TCAAGCGTAT
6702084 AAATTTTT-A-A
1 AAATTTTTAATA
6702094 AAA-TTTTAAT-
1 AAATTTTTAATA
*
6702104 AAATTTTTTATA
1 AAATTTTTAATA
6702116 AATATTTTTAATA
1 AA-ATTTTTAATA
*
6702129 AAAATTTTAATA
1 AAATTTTTAATA
6702141 AAATTTTTA
1 AAATTTTTA
6702150 TTATTAAATA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
9 4 0.09
10 7 0.15
11 6 0.13
12 19 0.40
13 11 0.23
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
AAATTTTTAATA
Found at i:6702212 original size:11 final size:12
Alignment explanation
Indices: 6702187--6702218 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
6702177 TTTATAAATT
6702187 ATATTTTTAATA
1 ATATTTTTAATA
6702199 ATATTTTTAA-A
1 ATATTTTTAATA
6702210 ATATTTTTA
1 ATATTTTTA
6702219 TTTTTTGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATATTTTTAATA
Found at i:6702283 original size:13 final size:12
Alignment explanation
Indices: 6702254--6702296 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
6702244 TTGGTTCATA
* *
6702254 TTTTCATTAAAA
1 TTTTTATTAAAT
6702266 TTTTTATTAAAT
1 TTTTTATTAAAT
*
6702278 TCTTTTAATAAAT
1 T-TTTTATTAAAT
6702291 TTTTTA
1 TTTTTA
6702297 AATTTCACCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 16 0.59
13 11 0.41
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTATTAAAT
Found at i:6703144 original size:11 final size:11
Alignment explanation
Indices: 6703109--6703146 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
6703099 TAAATTAGAG
*
6703109 TTATGTAAAAT
1 TTATATAAAAT
6703120 TTA-ATAAAATT
1 TTATATAAAA-T
6703131 TTATATAAAAT
1 TTATATAAAAT
6703142 TTATA
1 TTATA
6703147 CTTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 5 0.21
11 13 0.54
12 6 0.25
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (11 bp):
TTATATAAAAT
Found at i:6708496 original size:11 final size:11
Alignment explanation
Indices: 6708480--6708521 Score: 68
Period size: 11 Copynumber: 3.8 Consensus size: 11
6708470 ATAGTGATGT
6708480 ATAATATAAAA
1 ATAATATAAAA
6708491 ATAATAT-AAA
1 ATAATATAAAA
6708501 ATATATATAAAA
1 ATA-ATATAAAA
6708513 ATAATATAA
1 ATAATATAA
6708522 TTTAAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.21
11 17 0.59
12 6 0.21
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
ATAATATAAAA
Found at i:6710675 original size:22 final size:21
Alignment explanation
Indices: 6710639--6710693 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 21
6710629 ATTTTTTTGG
*
6710639 TTTTTATATATTATTTTAATAATA
1 TTTTT-TATA-TATTTAAATAA-A
6710663 TTTTTTATATATTTAAATAAA
1 TTTTTTATATATTTAAATAAA
6710684 -TTTTTATATA
1 TTTTTTATATA
6710694 AAAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 10 0.33
21 1 0.03
22 10 0.33
23 4 0.13
24 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTTTATATATTTAAATAAA
Found at i:6710736 original size:19 final size:20
Alignment explanation
Indices: 6710712--6710754 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
6710702 TATTTTATTT
*
6710712 TATAAAAAATTAA-AATATA
1 TATAAAAAATTAATAAAATA
6710731 TAT-AAAAATTAATAAAATA
1 TATAAAAAATTAATAAAATA
6710750 TATAA
1 TATAA
6710755 TTTGATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 9 0.43
19 11 0.52
20 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TATAAAAAATTAATAAAATA
Found at i:6711344 original size:2 final size:2
Alignment explanation
Indices: 6711333--6711364 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
6711323 CCTACTACTT
6711333 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6711365 GAATGTATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6712142 original size:15 final size:14
Alignment explanation
Indices: 6712122--6712158 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
6712112 ATTTTTAATT
6712122 TTTAAAATTTCAAAA
1 TTTAAAATTT-AAAA
6712137 TTTAAAATTTAAAA
1 TTTAAAATTTAAAA
6712151 TATTAAAA
1 T-TTAAAA
6712159 AATGAATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAAAATTTAAAA
Found at i:6712143 original size:7 final size:7
Alignment explanation
Indices: 6712122--6712158 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
6712112 ATTTTTAATT
6712122 TTTAAAA
1 TTTAAAA
6712129 TTTCAAAA
1 TTT-AAAA
6712137 TTTAAAA
1 TTTAAAA
6712144 TTTAAAA
1 TTTAAAA
6712151 TATTAAAA
1 T-TTAAAA
6712159 AATGAATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 15 0.54
8 13 0.46
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (7 bp):
TTTAAAA
Found at i:6723868 original size:2 final size:2
Alignment explanation
Indices: 6723861--6723891 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6723851 TGTATTTGGA
6723861 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
6723892 AGCAAAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6726276 original size:2 final size:2
Alignment explanation
Indices: 6726269--6726296 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6726259 ATTTTCAACA
6726269 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6726297 CACTTGTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6732368 original size:13 final size:13
Alignment explanation
Indices: 6732352--6732400 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
6732342 TTTATATATT
6732352 ATTTTAATATAAA
1 ATTTTAATATAAA
6732365 ATTTTAATAT---
1 ATTTTAATATAAA
6732375 A-TTTAA-ATAAA
1 ATTTTAATATAAA
6732386 A-TTTAATATAAA
1 ATTTTAATATAAA
6732398 ATT
1 ATT
6732401 ATTATTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
8 2 0.06
9 5 0.16
10 1 0.03
11 6 0.19
12 6 0.19
13 11 0.35
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTTTAATATAAA
Found at i:6732392 original size:20 final size:22
Alignment explanation
Indices: 6732354--6732395 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
6732344 TATATATTAT
6732354 TTTAATATAAAATTTTAATATA
1 TTTAATATAAAATTTTAATATA
6732376 TTTAA-ATAAAA-TTTAATATA
1 TTTAATATAAAATTTTAATATA
6732396 AAATTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 6 0.30
22 5 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTAATATAAAATTTTAATATA
Found at i:6732434 original size:17 final size:17
Alignment explanation
Indices: 6732414--6732464 Score: 77
Period size: 17 Copynumber: 3.0 Consensus size: 17
6732404 ATTTTTATTT
6732414 TATA-AAAATTTAAAATA
1 TATATAAAATTTAAAA-A
6732431 TATATAAAATTTAAAAA
1 TATATAAAATTTAAAAA
*
6732448 TATATATAATTTAAAAA
1 TATATAAAATTTAAAAA
6732465 ATTATGTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 21 0.66
18 11 0.34
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TATATAAAATTTAAAAA
Found at i:6732438 original size:19 final size:20
Alignment explanation
Indices: 6732414--6732456 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
6732404 ATTTTTATTT
6732414 TATAAAAATTT-AAAATATA
1 TATAAAAATTTAAAAATATA
6732433 TAT-AAAATTTAAAAATATA
1 TATAAAAATTTAAAAATATA
6732452 TATAA
1 TATAA
6732457 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.32
19 14 0.64
20 1 0.05
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TATAAAAATTTAAAAATATA
Found at i:6732474 original size:17 final size:18
Alignment explanation
Indices: 6732420--6732479 Score: 79
Period size: 17 Copynumber: 3.4 Consensus size: 18
6732410 ATTTTATAAA
* *
6732420 AATTTAAAATATATATAA
1 AATTTAAAAAATATATAT
6732438 AATTT-AAAAATATATAT
1 AATTTAAAAAATATATAT
*
6732455 AATTTAAAAAAT-TATGT
1 AATTTAAAAAATATATAT
6732472 AATTTAAA
1 AATTTAAA
6732480 TTTTTTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
17 27 0.71
18 11 0.29
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
AATTTAAAAAATATATAT
Found at i:6733462 original size:19 final size:20
Alignment explanation
Indices: 6733442--6733479 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6733432 TTTTAAATTT
6733442 AAATAATAAAAAA-TATATTA
1 AAAT-ATAAAAAATTATATTA
6733462 AAATATAAAAAATTATAT
1 AAATATAAAAAATTATAT
6733480 GAGCTACTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATATAAAAAATTATATTA
Found at i:6736497 original size:160 final size:161
Alignment explanation
Indices: 6736198--6736510 Score: 531
Period size: 160 Copynumber: 2.0 Consensus size: 161
6736188 TGGAATAACC
*
6736198 GAAGAATGCTTTTTTAGTAAATTTCTTTTCATCTATTTGTCTGAACTTTCCTAACTGCAGTTCCC
1 GAAGAATGCTTTTTTAGTAAATTTCTTTTCATCAATTTGTCTGAACTTTCCTAACTGCAGTTCCC
* * *
6736263 CAATTATTTGAGGATGTGAAGAAAGAATAGTTTCTTAGCTGCAAGACTTATAATATCATCATTAA
66 CAATTATTCGAGGACGTCAAGAAAGAATAGTTTCTTAGCTGCAAGACTTATAATATCATCATTAA
*
6736328 TATCAATTGTGTTCTCTTTGGCACCTCAACT
131 TAACAATTGTGTTCTCTTTGGCACCTCAACT
**
6736359 GAAGAATGCTTTTTTAGTAAATTTCTTTTCATCAATTTGTCTTTACTTTCCTAACTGCAGTT-CC
1 GAAGAATGCTTTTTTAGTAAATTTCTTTTCATCAATTTGTCTGAACTTTCCTAACTGCAGTTCCC
*
6736423 CAATTATTCGAGGACGTCAAGAAAGAATAGTTTCTTATGC-GCAAGACTTGTAATATCATCATTA
66 CAATTATTCGAGGACGTCAAGAAAGAATAGTTTCTTA-GCTGCAAGACTTATAATATCATCATTA
6736487 ATAACAATTGTGTTCTCTTTGGCA
130 ATAACAATTGTGTTCTCTTTGGCA
6736511 TTTTCTTTAC
Statistics
Matches: 143, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
160 82 0.57
161 61 0.43
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (161 bp):
GAAGAATGCTTTTTTAGTAAATTTCTTTTCATCAATTTGTCTGAACTTTCCTAACTGCAGTTCCC
CAATTATTCGAGGACGTCAAGAAAGAATAGTTTCTTAGCTGCAAGACTTATAATATCATCATTAA
TAACAATTGTGTTCTCTTTGGCACCTCAACT
Found at i:6738522 original size:99 final size:99
Alignment explanation
Indices: 6738370--6738569 Score: 391
Period size: 99 Copynumber: 2.0 Consensus size: 99
6738360 ACATAATAAT
6738370 ATCAAATGCATATTACAATTTGAGTGACTTATATCTTATATATGATACTTATGGCTTTATTCGAG
1 ATCAAATGCATATTACAATTTGAGTGACTTATATCTTATATATGATACTTATGGCTTTATTCGAG
6738435 TAACCTGAACTTGACATGAAAATGAATGTTTAGA
66 TAACCTGAACTTGACATGAAAATGAATGTTTAGA
*
6738469 ATCAAATGCATATTACAATTTGAGTGACTTATATCTTATATATGATACTTATGGCTTTATTTGAG
1 ATCAAATGCATATTACAATTTGAGTGACTTATATCTTATATATGATACTTATGGCTTTATTCGAG
6738534 TAACCTGAACTTGACATGAAAATGAATGTTTAGA
66 TAACCTGAACTTGACATGAAAATGAATGTTTAGA
6738568 AT
1 AT
6738570 TCTCAATTTG
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 100 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (99 bp):
ATCAAATGCATATTACAATTTGAGTGACTTATATCTTATATATGATACTTATGGCTTTATTCGAG
TAACCTGAACTTGACATGAAAATGAATGTTTAGA
Found at i:6740588 original size:27 final size:28
Alignment explanation
Indices: 6740558--6740612 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
6740548 TTATTAAACT
* *
6740558 TAATTTTTATTTTT-TATTTGTATATTA
1 TAATTTGTATTTTTATATTTATATATTA
6740585 TAATTTGTATTTTTAATATTTATATATT
1 TAATTTGTATTTTT-ATATTTATATATT
6740613 TGTGAATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 13 0.54
29 11 0.46
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (28 bp):
TAATTTGTATTTTTATATTTATATATTA
Found at i:6740918 original size:17 final size:17
Alignment explanation
Indices: 6740896--6740928 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
6740886 TTAAATAATG
6740896 TTAGGATGATTTTTTTA
1 TTAGGATGATTTTTTTA
6740913 TTAGGATGATTTTTTT
1 TTAGGATGATTTTTTT
6740929 TTTTTATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (17 bp):
TTAGGATGATTTTTTTA
Found at i:6743915 original size:2 final size:2
Alignment explanation
Indices: 6743908--6743937 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6743898 GTTGCTTTCC
6743908 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6743938 GAGTTATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6749833 original size:44 final size:44
Alignment explanation
Indices: 6749770--6749860 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
6749760 TGTATAGAAT
*
6749770 TTAGGGTATTTAGCATCTTCCATGTTGTTGTTTACAAGGCATCA
1 TTAGGGTATTTAGCATCTTCCATATTGTTGTTTACAAGGCATCA
*
6749814 TTAGGGTATTTAGCATCTTCCATATTGTTGTTTGCAAGGCATCA
1 TTAGGGTATTTAGCATCTTCCATATTGTTGTTTACAAGGCATCA
6749858 TTA
1 TTA
6749861 CAGATGACTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (44 bp):
TTAGGGTATTTAGCATCTTCCATATTGTTGTTTACAAGGCATCA
Found at i:6765098 original size:15 final size:15
Alignment explanation
Indices: 6765045--6765129 Score: 57
Period size: 15 Copynumber: 5.5 Consensus size: 15
6765035 ATATTATTCC
* *
6765045 ATGAAACAACTATTC
1 ATGAAATAACTATTT
*
6765060 ATG-AATCAATCTTTTT
1 ATGAAAT-AA-CTATTT
6765076 AT-AGAATAACTATTT
1 ATGA-AATAACTATTT
* *
6765091 ATGAAATAATTATTC
1 ATGAAATAACTATTT
**
6765106 AAAAAATAACTATTTT
1 ATGAAATAACTA-TTT
6765122 ATGAAATA
1 ATGAAATA
6765130 GCTGTTATTG
Statistics
Matches: 52, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
14 2 0.04
15 30 0.58
16 17 0.33
17 3 0.06
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (15 bp):
ATGAAATAACTATTT
Found at i:6776769 original size:16 final size:16
Alignment explanation
Indices: 6776748--6776778 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6776738 GAGATTAAGA
6776748 TGAGAATGACAGAAAC
1 TGAGAATGACAGAAAC
*
6776764 TGAGAATGAGAGAAA
1 TGAGAATGACAGAAA
6776779 GAAGTGAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.29, T:0.13
Consensus pattern (16 bp):
TGAGAATGACAGAAAC
Found at i:6778280 original size:30 final size:30
Alignment explanation
Indices: 6778238--6778313 Score: 109
Period size: 30 Copynumber: 2.5 Consensus size: 30
6778228 TCAATCAAAT
*
6778238 TAAAAACCCAAATCAAATTTAACAAAAAAC
1 TAAAAACCCAAATCAAATTCAACAAAAAAC
* *
6778268 T-AAAACCTCAAATCAAATTCATCAACAAAC
1 TAAAAACC-CAAATCAAATTCAACAAAAAAC
6778298 TAAAAACCCAAATCAA
1 TAAAAACCCAAATCAA
6778314 CAACAAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
29 6 0.15
30 29 0.71
31 6 0.15
ACGTcount: A:0.59, C:0.24, G:0.00, T:0.17
Consensus pattern (30 bp):
TAAAAACCCAAATCAAATTCAACAAAAAAC
Found at i:6780989 original size:14 final size:14
Alignment explanation
Indices: 6780958--6780989 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
6780948 TCGAACACAT
*
6780958 AAAACCAAAAAACA
1 AAAACCAAAAAAAA
6780972 AAAACCAAAAAAAA
1 AAAACCAAAAAAAA
6780986 AAAA
1 AAAA
6780990 ATCATCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAACCAAAAAAAA
Done.