Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 35 of 129
Found at i:7232871 original size:10 final size:10
Alignment explanation
Indices: 7232856--7232880 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7232846 GTTTCAAGTT
7232856 TTTTTTTAAA
1 TTTTTTTAAA
7232866 TTTTTTTAAA
1 TTTTTTTAAA
7232876 TTTTT
1 TTTTT
7232881 AAATTTTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:7232897 original size:19 final size:17
Alignment explanation
Indices: 7232854--7232900 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
7232844 CCGTTTCAAG
7232854 TTTT-TTTTTAAATTTT
1 TTTTATTTTTAAATTTT
*
7232870 TTTAAATTTTTAAATTTT
1 TTT-TATTTTTAAATTTT
7232888 GCTTTTATTTTTA
1 --TTTTATTTTTA
7232901 TTTATGTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 3 0.12
18 12 0.48
19 7 0.28
20 3 0.12
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTATTTTTAAATTTT
Found at i:7233060 original size:8 final size:8
Alignment explanation
Indices: 7233040--7233106 Score: 50
Period size: 8 Copynumber: 8.2 Consensus size: 8
7233030 AACTTTTAAG
7233040 AAAATAAT
1 AAAATAAT
7233048 AAAAATAAT
1 -AAAATAAT
*
7233057 AAAAGGAAT
1 AAAA-TAAT
7233066 -AAATAAAT
1 AAAAT-AAT
7233074 AAAAT--T
1 AAAATAAT
*
7233080 AAATATAAA
1 AAA-ATAAT
*
7233089 AAAATACT
1 AAAATAAT
7233097 AAAATAAT
1 AAAATAAT
7233105 AA
1 AA
7233107 CAAAAAATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
6 4 0.09
7 2 0.04
8 22 0.48
9 18 0.39
ACGTcount: A:0.73, C:0.01, G:0.03, T:0.22
Consensus pattern (8 bp):
AAAATAAT
Found at i:7233254 original size:24 final size:23
Alignment explanation
Indices: 7233214--7233261 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
7233204 ATATTTATTT
7233214 TAAAACAAAATACAAAATAAAAAA
1 TAAAACAAAATACAAAA-AAAAAA
*
7233238 TAAAAC-AAATGATAAAAAAAAAA
1 TAAAACAAAAT-ACAAAAAAAAAA
7233261 T
1 T
7233262 TAACAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (23 bp):
TAAAACAAAATACAAAAAAAAAA
Found at i:7237348 original size:22 final size:22
Alignment explanation
Indices: 7237312--7237360 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
7237302 CCTCAAATCA
7237312 ACTTGTCCACCATTCATACAAT
1 ACTTGTCCACCATTCATACAAT
* *
7237334 ACTTGTTCACGATTCATACAAT
1 ACTTGTCCACCATTCATACAAT
7237356 ACTTG
1 ACTTG
7237361 GATAGATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (22 bp):
ACTTGTCCACCATTCATACAAT
Found at i:7246365 original size:19 final size:17
Alignment explanation
Indices: 7246343--7246382 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
7246333 ATTTTTTATA
*
7246343 TTATTTTTAATTTTTGCTT
1 TTATTTTT-ATTTATG-TT
7246362 TTATTTTTATTTATGTT
1 TTATTTTTATTTATGTT
7246379 TTAT
1 TTAT
7246383 ATATTACTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 6 0.30
19 8 0.40
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (17 bp):
TTATTTTTATTTATGTT
Found at i:7246516 original size:10 final size:10
Alignment explanation
Indices: 7246489--7246523 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
7246479 ATTTTACCTT
*
7246489 AAAATTTAAC
1 AAAATTTAAG
*
7246499 AAACTTTAAG
1 AAAATTTAAG
7246509 AAAATTTAAG
1 AAAATTTAAG
7246519 AAAAT
1 AAAAT
7246524 AATAAAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (10 bp):
AAAATTTAAG
Found at i:7246538 original size:9 final size:8
Alignment explanation
Indices: 7246519--7246573 Score: 56
Period size: 9 Copynumber: 6.4 Consensus size: 8
7246509 AAAATTTAAG
7246519 AAAATAAT
1 AAAATAAT
7246527 AAAATGAAT
1 AAAAT-AAT
*
7246536 AAATAAAAT
1 AAA-ATAAT
7246545 AAAATAAT
1 AAAATAAT
*
7246553 AATAACAAT
1 AA-AATAAT
7246562 AACAATAAT
1 AA-AATAAT
7246571 AAA
1 AAA
7246574 TTTTAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 12 0.31
9 26 0.67
10 1 0.03
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.22
Consensus pattern (8 bp):
AAAATAAT
Found at i:7246697 original size:19 final size:18
Alignment explanation
Indices: 7246675--7246733 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 18
7246665 TATTTATTTT
7246675 AAAATAAAATACAAAATAA
1 AAAAT-AAATACAAAATAA
*
7246694 AAAATAGA-ACAAATGATAA
1 AAAATAAATACAAA--ATAA
*
7246713 AAAATTAAATA-ATAATAA
1 AAAA-TAAATACAAAATAA
7246731 AAA
1 AAA
7246734 CTTATTATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
17 5 0.15
18 9 0.27
19 13 0.39
20 5 0.15
21 1 0.03
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (18 bp):
AAAATAAATACAAAATAA
Found at i:7247057 original size:14 final size:14
Alignment explanation
Indices: 7247038--7247064 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7247028 TTTATTCCTA
7247038 ATTAAAATATATAT
1 ATTAAAATATATAT
7247052 ATTAAAATATATA
1 ATTAAAATATATA
7247065 AATGCTATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTAAAATATATAT
Found at i:7247378 original size:21 final size:21
Alignment explanation
Indices: 7247346--7247393 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 21
7247336 AAAATTTAGA
7247346 ATAAAAAATTT-AATAAAATT
1 ATAAAAAATTTAAATAAAATT
*
7247366 ATAAAAAGTTTTAAATAAAATT
1 ATAAAAA-ATTTAAATAAAATT
7247388 ATAAAA
1 ATAAAA
7247394 TTTTTATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 7 0.28
21 3 0.12
22 15 0.60
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAAAAAATTTAAATAAAATT
Found at i:7254957 original size:17 final size:17
Alignment explanation
Indices: 7254935--7255011 Score: 77
Period size: 17 Copynumber: 4.4 Consensus size: 17
7254925 ATCTTTTTTT
* *
7254935 AAAAAATACAAATTAAA
1 AAAAAATAAAAATGAAA
7254952 AAAAAATAAAAATGAAA
1 AAAAAATAAAAATGAAA
*
7254969 AAAACAAAAAAAAGTGAAA
1 AAAA-AATAAAAA-TGAAA
7254988 AAAAAGA-AGAAAAT-AAA
1 AAAAA-ATA-AAAATGAAA
7255005 AAAAAAT
1 AAAAAAT
7255012 GAAGAAGAAG
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
16 1 0.02
17 27 0.52
18 10 0.19
19 14 0.27
ACGTcount: A:0.81, C:0.03, G:0.06, T:0.10
Consensus pattern (17 bp):
AAAAAATAAAAATGAAA
Found at i:7254971 original size:19 final size:18
Alignment explanation
Indices: 7254949--7255010 Score: 72
Period size: 19 Copynumber: 3.4 Consensus size: 18
7254939 AATACAAATT
*
7254949 AAAAAAAAATAAAAATGA
1 AAAAAAAAAAAAAAATGA
*
7254967 AAAAAACAAAAAAAAGTGA
1 AAAAAA-AAAAAAAAATGA
* *
7254986 AAAAAAAGAAGAAAAT-A
1 AAAAAAAAAAAAAAATGA
7255003 AAAAAAAA
1 AAAAAAAA
7255011 TGAAGAAGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
17 8 0.22
18 13 0.35
19 16 0.43
ACGTcount: A:0.84, C:0.02, G:0.08, T:0.06
Consensus pattern (18 bp):
AAAAAAAAAAAAAAATGA
Found at i:7255027 original size:28 final size:28
Alignment explanation
Indices: 7254959--7255014 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
7254949 AAAAAAAAAT
* * *
7254959 AAAAATGAAAAAAACAAAAAAAAGTGAA
1 AAAAAAGAAGAAAACAAAAAAAAATGAA
*
7254987 AAAAAAGAAGAAAATAAAAAAAAATGAA
1 AAAAAAGAAGAAAACAAAAAAAAATGAA
7255015 GAAGAAGTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (28 bp):
AAAAAAGAAGAAAACAAAAAAAAATGAA
Found at i:7256127 original size:134 final size:129
Alignment explanation
Indices: 7255921--7256507 Score: 560
Period size: 134 Copynumber: 4.4 Consensus size: 129
7255911 ACATTATTGT
* * * *
7255921 TTAAGTTATTTTTTAATACTTTATACAA--A-AAAAAATTTGTTGCAAAAATTTTTATTATATTT
1 TTAATTTATTTTTTAATATTTTATACAACGACAAAAAAGTTGTTGCAAAAATTTTTATCATATTT
* * * * * * *
7255983 GTAATAATAAACTATTATTGCTATGAAAACCTTTTTTTTATTTGTAACAAGTTTTCAATGTTGTT
66 ATAATAATAAA-AATTATTGTTATGAAAA-C-TTATTTTATTTGCAACAATTTTTCAATGTCGTT
7256048 GC
128 GC
* *
7256050 TTAATTTATTTATTTAATATTTTATACAATGACAAATAAAGTTGTTGCAAAAATTTTTATCACAT
1 TTAATTTATTT-TTTAATATTTTATACAACGACAAA-AAAGTTGTTGCAAAAATTTTTATCATAT
* ** *
7256115 TTATAACT-ATAAAAAATTATTATTATGAAAACTTATTTTATTTGCAATGATTTTTCAATTTCGT
64 TTATAA-TAAT-AAAAATTATTGTTATGAAAACTTATTTTATTTGCAACAATTTTTCAATGTCGT
**
7256179 TAT
127 TGC
* * * * * *
7256182 TTAATTTATTAGTTTAATATTTTATACAATGATAAAAAAGGTTATTACGAAAAAATTTTTATTAT
1 TTAATTTATT-TTTTAATATTTTATACAACGACAAAAAA-GTTGTT--GCAAAAATTTTTATCAT
* * * * *
7256247 ATTTGTAATGATTAAAAATTATTGTTGTGGAAACTTATTTTATTTGCAA-ATATTTTTCAACGTC
62 ATTTATAAT-AATAAAAATTATTGTTATGAAAACTTATTTTATTTGCAACA-ATTTTTCAATGTC
7256311 GTTGC
125 GTTGC
* *
7256316 TTAATTTATTTTTTAATATTTTATACAACGATGAAAAAA-TTATT--AAGAAAGTTTTTATCATA
1 TTAATTTATTTTTTAATATTTTATACAACGA-CAAAAAAGTTGTTGCAA-AAA-TTTTTATC---
** ** * *
7256378 TATATTTATAACGATAAAAATTATTGTTACAAAAACATATTTTATTTGCAACAATTTTTAAATGT
60 -ATATTTATAATAATAAAAATTATTGTTATGAAAACTTATTTTATTTGCAACAATTTTTCAATGT
*
7256443 CATTGC
124 CGTTGC
* *
7256449 ATAATTTATTCTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAATTTTTAT
1 TTAATTTATT-TTTTAATATTTTATACAACGACAAAAAAGTTGTTGCAAAAATTTTTAT
7256508 GTAACTAAAC
Statistics
Matches: 379, Mismatches: 53, Indels: 47
0.79 0.11 0.10
Matches are distributed among these distances:
128 2 0.01
129 13 0.03
130 23 0.06
131 3 0.01
132 70 0.18
133 86 0.23
134 172 0.45
135 8 0.02
136 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (129 bp):
TTAATTTATTTTTTAATATTTTATACAACGACAAAAAAGTTGTTGCAAAAATTTTTATCATATTT
ATAATAATAAAAATTATTGTTATGAAAACTTATTTTATTTGCAACAATTTTTCAATGTCGTTGC
Found at i:7259325 original size:262 final size:259
Alignment explanation
Indices: 7258851--7259693 Score: 850
Period size: 262 Copynumber: 3.2 Consensus size: 259
7258841 GACATCATTG
* * * * *
7258851 CTTAAGTTATTTTTTAATATTTTAT---ACAA-AAAAAA-TTGTTGCCAAAATTTTTATTATATT
1 CTTAATTTATTGTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTATTATATT
* * * * * * *
7258911 TGTAATAATAAAATATTATTGCTATGAAAACCTTTTTTTATTTGTAACA-AGTTTTCAATGTTGT
66 TGTAATATTAAAA-ATTATTGTTGTGAAAA-CTTATTTTATTTGCAA-ATATTTTTCAATGTCGT
* * *
7258975 TGCTTAATTTATTTATTTAATATTTTATACAATGACAAATAAAGTTGTTACAAAAATTTTTATCA
128 TGCTTAATTTATTT-TTTAATATTTTATACAATGACAAA-AAAATTATTACAAAAATTTTTAGCA
* *
7259040 CATTTATAACGATAAAAAATTATTATTATGAAAACTTATTTTATTTG-TAATGAATTTTCAATGT
191 CATTTACAACGATAAAAAATTATTATTATGAAAACTTATTTTATTTGCAAAT-AATTTTCAATGT
7259104 CGTTA
255 CGTTA
* * * *
7259109 TTTAATTTATTAGTTTAATATTTTATACAATAATAAAAGAGTTATTACAAAAATATTTTTATTAT
1 CTTAATTTATT-GTTTAATATTTTATACAACAACAAAAAAGTTATTAC-AAAA-ATTTTTATTAT
*
7259174 ATTTGTAATGATTAAAAATTATTGTTGTGGAAACTTATTTTATTTGCAAATATTTTTCAATGTCG
63 ATTTGTAAT-ATTAAAAATTATTGTTGTGAAAACTTATTTTATTTGCAAATATTTTTCAATGTCG
* *
7259239 TTGCTTAATTTA-ATTTTAATATTTTATACAATGACAAAAAAATTATTACAAAAATTTTTAGCAT
127 TTGCTTAATTTATTTTTTAATATTTTATACAATGACAAAAAAATTATTACAAAAATTTTTAGCAC
* *
7259303 ATTTGCAACGATAAAAAATTATTATTATGAAAACTTGTTTTATTTGCAAATAATTTTCAATGTCG
192 ATTTACAACGATAAAAAATTATTATTATGAAAACTTATTTTATTTGCAAATAATTTTCAATGTCG
*
7259368 TTG
257 TTA
* * *
7259371 CTTAATTTATTTTTTAATATTTTATATAACAACAAAAAAGTTATTACAAAAATTTTTATCATATT
1 CTTAATTTATTGTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTATTATATT
* * * * * * ***
7259436 TATAATAATAAAAAATTATTATTGCGAAAACTTGTTTTATTTAC-AATGACTTTTT-AGCATCGT
66 TGTAAT-ATTAAAAATTATTGTTGTGAAAACTTATTTTATTTGCAAAT-A-TTTTTCAATGTCGT
* * * *
7259499 TACTTAATTTATTTTTTAATATTTTATACAACGA-TAAAAAATTATTA-AGAAAGGTTTTATCAA
128 TGCTTAATTTATTTTTTAATATTTTATACAATGACAAAAAAATTATTACA-AAA-ATTTT-T--A
** * * * * * * * *
7259562 ATATATTTATAACGATAAAAAATTATTGTTA-CAAAAATATGTTTTATTTGCAACA-ATTTTTAA
188 GCACATTTACAACGATAAAAAATTATTATTATGAAAACT-TATTTTATTTGCAA-ATAATTTTCA
* * *
7259625 ATATCATTG
251 ATGTCGTTA
* * * * *
7259634 CATAATTTATTCTTTTAATATTTTATACAACAACAAAAAAGTTGTTGCGAAAATTTTTAT
1 CTTAATTTATT-GTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTAT
7259694 GTAACTAAAT
Statistics
Matches: 498, Mismatches: 65, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
258 13 0.03
259 93 0.19
260 33 0.07
261 32 0.06
262 99 0.20
263 96 0.19
264 52 0.10
265 41 0.08
266 33 0.07
267 6 0.01
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.46
Consensus pattern (259 bp):
CTTAATTTATTGTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTATTATATT
TGTAATATTAAAAATTATTGTTGTGAAAACTTATTTTATTTGCAAATATTTTTCAATGTCGTTGC
TTAATTTATTTTTTAATATTTTATACAATGACAAAAAAATTATTACAAAAATTTTTAGCACATTT
ACAACGATAAAAAATTATTATTATGAAAACTTATTTTATTTGCAAATAATTTTCAATGTCGTTA
Found at i:7259454 original size:130 final size:130
Alignment explanation
Indices: 7258848--7259693 Score: 818
Period size: 133 Copynumber: 6.5 Consensus size: 130
7258838 TATGACATCA
* * * * *
7258848 TTGCTTAAGTTATTTTTTAATATTTTAT---ACAA-AAAAAA-TTGTTGCCAAAATTTTTATTAT
1 TTGCTTAATTTATTTTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTATCAT
* ** * ** * * *
7258908 ATTTGTAATAATAAAATATTATTGCTATGAAAACCTTTTTTTATTTGTAACA-AGTTTTCAATGT
66 ATTTATAACGATAAAAAATTATTATTATGAAAA-CTTGTTTTATTTGCAA-ATAATTTTCAATGT
*
7258972 TG
129 CG
** *
7258974 TTGCTTAATTTATTTATTTAATATTTTATACAATGACAAATAAAGTTGTTACAAAAATTTTTATC
1 TTGCTTAATTTATTT-TTTAATATTTTATACAACAACAAA-AAAGTTATTACAAAAATTTTTATC
* * *
7259039 ACATTTATAACGATAAAAAATTATTATTATGAAAACTTATTTTATTTG-TAATGAATTTTCAATG
64 ATATTTATAACGATAAAAAATTATTATTATGAAAACTTGTTTTATTTGCAAAT-AATTTTCAATG
7259103 TCG
128 TCG
** * * * *
7259106 TTATTTAATTTATTAGTTTAATATTTTATACAATAATAAAAGAGTTATTACAAAAATATTTTTAT
1 TTGCTTAATTTATT-TTTTAATATTTTATACAACAACAAAAAAGTTATTAC-AAAA-ATTTTTAT
* * * * * * * * *
7259171 TATATTTGTAATGATTAAAAATTATTGTTGTGGAAACTTATTTTATTTGCAAATATTTTTCAATG
63 CATATTTATAACGATAAAAAATTATTATTATGAAAACTTGTTTTATTTGCAAATAATTTTCAATG
7259236 TCG
128 TCG
* ** * *
7259239 TTGCTTAATTTA-ATTTTAATATTTTATACAATGACAAAAAAATTATTACAAAAATTTTTAGCAT
1 TTGCTTAATTTATTTTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTATCAT
**
7259303 ATTTGCAACGATAAAAAATTATTATTATGAAAACTTGTTTTATTTGCAAATAATTTTCAATGTCG
66 ATTTATAACGATAAAAAATTATTATTATGAAAACTTGTTTTATTTGCAAATAATTTTCAATGTCG
*
7259368 TTGCTTAATTTATTTTTTAATATTTTATATAACAACAAAAAAGTTATTACAAAAATTTTTATCAT
1 TTGCTTAATTTATTTTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTATCAT
** ** * * * ***
7259433 ATTTATAATAATAAAAAATTATTATTGCGAAAACTTGTTTTATTTAC-AATGACTTTTTAGCATC
66 ATTTATAACGATAAAAAATTATTATTATGAAAACTTGTTTTATTTGCAAAT-AATTTTCAATGTC
7259497 G
130 G
* * * **
7259498 TTACTTAATTTATTTTTTAATATTTTATACAACGATAAAAAA-TTATTA-AGAAAGGTTTTATCA
1 TTGCTTAATTTATTTTTTAATATTTTATACAACAACAAAAAAGTTATTACA-AAAATTTTTATC-
* * * * *
7259561 AATATATTTATAACGATAAAAAATTATTGTTA-CAAAAATATGTTTTATTTGCAACA-ATTTTTA
64 ---ATATTTATAACGATAAAAAATTATTATTATGAAAACT-TGTTTTATTTGCAA-ATAATTTTC
* *
7259624 AATATCA
124 AATGTCG
* * * *
7259631 TTGCATAATTTATTCTTTTAATATTTTATACAACAACAAAAAAGTTGTTGCGAAAATTTTTAT
1 TTGCTTAATTTATT-TTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTAT
7259694 GTAACTAAAT
Statistics
Matches: 597, Mismatches: 97, Indels: 43
0.81 0.13 0.06
Matches are distributed among these distances:
126 14 0.02
127 13 0.02
128 1 0.00
129 97 0.16
130 140 0.23
131 44 0.07
132 70 0.12
133 174 0.29
134 30 0.05
135 14 0.02
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (130 bp):
TTGCTTAATTTATTTTTTAATATTTTATACAACAACAAAAAAGTTATTACAAAAATTTTTATCAT
ATTTATAACGATAAAAAATTATTATTATGAAAACTTGTTTTATTTGCAAATAATTTTCAATGTCG
Found at i:7259609 original size:392 final size:394
Alignment explanation
Indices: 7258844--7259692 Score: 986
Period size: 392 Copynumber: 2.2 Consensus size: 394
7258834 ACGTTATGAC
* * * **
7258844 ATCATTGCTTAAGTTATTTTTTAATATTTTATAC--A-AAAAAAATTGTTGCCAAAATTTTTATT
1 ATCATTGCTTAATTTATATTTTAATATTTTATACAAACAAAAAAATTGTTGCAAAAATTTTTAGC
* * * * * * *
7258906 ATATTTGTAATAATAAAATATTATTGCTATGAAAACCTTTTTTTATTTGTAACAAGTTTTCAATG
66 ATATTTGCAACAATAAAAAATTATTACTATGAAAACCTTGTTTTATTTGCAACAAATTTTCAATG
* ** *
7258971 TTGTTGCTTAATTTATTTATTTAATATTTTATACAATGACAAATAAAGTTGTTACAAAAATTTTT
131 TCGTTGCTTAATTTATTTATTTAATATTTTATACAACAACAAATAAAGTTATTACAAAAATTTTT
* * **
7259036 ATCACATTTATAACGATAAAAAATTATTATTATGAAAACTTATTTTATTTGTAATGAATTTTCAA
196 ATCACATTTATAACAATAAAAAATTATTATTACGAAAACTTATTTTATTTACAATGAATTTTCAA
** * * * *
7259101 TGTCGTTATTTAATTTATTAGTTTAATATTTTATACAATAATAAAAGAGTTATTACAAAAATATT
261 CATCGTTACTTAATTTATTAGTTTAATATTTTATACAACAATAAAAGAATTATTACAAAAAGATT
* * * * *** *
7259166 TTTATTATATTTGTAATGATTAAAAATTATTGTTGTGGAAACTTATTTTATTTGCAA-ATATTTT
326 TTTAATATATTTATAACGATAAAAAATTATTGTTGACAAAAATTATTTTATTTGCAACA-ATTTT
*
7259230 TCAAT
390 TAAAT
* * * *
7259235 GTCGTTGCTTAATTTA-ATTTTAATATTTTATACAATGACAAAAAAATTATTACAAAAATTTTTA
1 ATCATTGCTTAATTTATATTTTAATATTTTATACAA--ACAAAAAAATTGTTGCAAAAATTTTTA
* *
7259299 GCATATTTGCAACGATAAAAAATTATTATTATGAAAA-CTTGTTTTATTTGCAA-ATAATTTTCA
64 GCATATTTGCAACAATAAAAAATTATTACTATGAAAACCTTGTTTTATTTGCAACA-AATTTTCA
*
7259362 ATGTCGTTGCTTAATTTATTT-TTTAATATTTTATATAACAACAAA-AAAGTTATTACAAAAATT
128 ATGTCGTTGCTTAATTTATTTATTTAATATTTTATACAACAACAAATAAAGTTATTACAAAAATT
* * * * *
7259425 TTTATCATATTTATAATAATAAAAAATTATTATTGCGAAAACTTGTTTTATTTACAATGACTTTT
193 TTTATCACATTTATAACAATAAAAAATTATTATTACGAAAACTTATTTTATTTACAATGAATTTT
* * * * *
7259490 TAGCATCGTTACTTAATTTATT-TTTTAATATTTTATACAACGATAAAA-AATTATTA-AGAAAG
258 CAACATCGTTACTTAATTTATTAGTTTAATATTTTATACAACAATAAAAGAATTATTACAAAAAG
* *
7259552 GTTTTATCAAATATATTTATAACGATAAAAAATTATTGTT-ACAAAAATATGTTTTATTTGCAAC
323 ATTTT-T--AATATATTTATAACGATAAAAAATTATTGTTGACAAAAAT-TATTTTATTTGCAAC
7259616 AATTTTTAAAT
384 AATTTTTAAAT
* * * *
7259627 ATCATTGCATAATTTATTCTTTTAATATTTTATACAACAACAAAAAAGTTGTTGCGAAAATTTTT
1 ATCATTGCTTAATTTA-TATTTTAATATTTTATAC-A-AACAAAAAAATTGTTGCAAAAATTTTT
7259692 A
63 A
7259693 TGTAACTAAA
Statistics
Matches: 381, Mismatches: 62, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
389 8 0.02
390 24 0.06
391 40 0.10
392 152 0.40
393 23 0.06
394 81 0.21
395 52 0.14
396 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (394 bp):
ATCATTGCTTAATTTATATTTTAATATTTTATACAAACAAAAAAATTGTTGCAAAAATTTTTAGC
ATATTTGCAACAATAAAAAATTATTACTATGAAAACCTTGTTTTATTTGCAACAAATTTTCAATG
TCGTTGCTTAATTTATTTATTTAATATTTTATACAACAACAAATAAAGTTATTACAAAAATTTTT
ATCACATTTATAACAATAAAAAATTATTATTACGAAAACTTATTTTATTTACAATGAATTTTCAA
CATCGTTACTTAATTTATTAGTTTAATATTTTATACAACAATAAAAGAATTATTACAAAAAGATT
TTTAATATATTTATAACGATAAAAAATTATTGTTGACAAAAATTATTTTATTTGCAACAATTTTT
AAAT
Found at i:7273185 original size:101 final size:100
Alignment explanation
Indices: 7273063--7273243 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 100
7273053 ATTAAAAATT
* * *
7273063 AAAAATTATTTATATATAAATTAAAGTATAAAAATTTGCTTGGGTGTAAAGT-AAAGAGTTATAA
1 AAAAATTATTTAGATACAAATTAAAATATAAAAATTTGCTTGGGTGTAAAGTAAAAG-GTTATAA
*
7273127 TTTATTTGAGTGTAATTAAAGTGTAAAGGTTATATA
65 TTTATTTGAGTATAATTAAAGTGTAAAGGTTATATA
* * * * *
7273163 AAAAATTTATTTGGATACAAATTAAAATATGATAATTTGTTTGGGTGTAAATTAAAAGGTTATAA
1 AAAAA-TTATTTAGATACAAATTAAAATATAAAAATTTGCTTGGGTGTAAAGTAAAAGGTTATAA
7273228 TTTATTTGAGTATAAT
65 TTTATTTGAGTATAAT
7273244 AAAATAATAA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
100 5 0.07
101 61 0.87
102 4 0.06
ACGTcount: A:0.43, C:0.01, G:0.15, T:0.40
Consensus pattern (100 bp):
AAAAATTATTTAGATACAAATTAAAATATAAAAATTTGCTTGGGTGTAAAGTAAAAGGTTATAAT
TTATTTGAGTATAATTAAAGTGTAAAGGTTATATA
Found at i:7273955 original size:16 final size:17
Alignment explanation
Indices: 7273931--7273963 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7273921 ATTTTGACAC
7273931 TCAAAT-AAAAAATAAG
1 TCAAATAAAAAAATAAG
*
7273947 TCAAGTAAAAAAATAAG
1 TCAAATAAAAAAATAAG
7273964 AAAGAGAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.09, T:0.18
Consensus pattern (17 bp):
TCAAATAAAAAAATAAG
Found at i:7275504 original size:5 final size:5
Alignment explanation
Indices: 7275485--7275542 Score: 50
Period size: 6 Copynumber: 11.4 Consensus size: 5
7275475 AATTTTTATT
*
7275485 TTAAA ATAAA TTTAAA TTAAA --AAA -TAAA TTAAA TTAAA TTTAAA TTTAAA
1 TTAAA TTAAA -TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA -TTAAA -TTAAA
7275535 TTTAAA TT
1 -TTAAA TT
7275543 TTAAATTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
3 3 0.06
4 3 0.06
5 20 0.43
6 21 0.45
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TTAAA
Found at i:7275516 original size:17 final size:18
Alignment explanation
Indices: 7275487--7275575 Score: 74
Period size: 20 Copynumber: 4.9 Consensus size: 18
7275477 TTTTTATTTT
7275487 AAAATAAATTTAAATTAA
1 AAAATAAATTTAAATTAA
7275505 AAAATAAA-TTAAATT-A
1 AAAATAAATTTAAATTAA
**
7275521 AATTTAAATTTAAATTTAA
1 AAAATAAATTTAAA-TTAA
*** *
7275540 ATTTTAAATTTTAAATTTTA
1 AAAATAAA-TTTAAA-TTAA
*
7275560 AAATTAAATTTAAATT
1 AAAATAAATTTAAATT
7275576 TAATATTATA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
16 7 0.11
17 12 0.20
18 12 0.20
19 14 0.23
20 16 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATAAATTTAAATTAA
Found at i:7275540 original size:28 final size:28
Alignment explanation
Indices: 7275485--7275575 Score: 92
Period size: 28 Copynumber: 3.1 Consensus size: 28
7275475 AATTTTTATT
* * **
7275485 TTAAAATAAATTTAAATTAAAAAATAAA
1 TTAAATTAAATTTAAATTTAAATTTAAA
7275513 TTAAATTAAATTTAAATTTAAATTTAAA
1 TTAAATTAAATTTAAATTTAAATTTAAA
*
7275541 TTTTAAATTTTAAATTTTAAAATTAAATTTAAA
1 --TTAAA--TTAAA-TTTAAATTTAAATTTAAA
7275574 TT
1 TT
7275576 TAATATTATA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
28 24 0.45
30 5 0.09
31 2 0.04
32 5 0.09
33 17 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
TTAAATTAAATTTAAATTTAAATTTAAA
Found at i:7275547 original size:7 final size:6
Alignment explanation
Indices: 7275491--7275578 Score: 99
Period size: 6 Copynumber: 14.5 Consensus size: 6
7275481 TATTTTAAAA
* **
7275491 TAAATT TAAATT AAAAAA TAAA-T TAAA-T TAAATT TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
*
7275537 TAAATTT TAAATTT TAAATTT TAAAAT TAAATT TAAATT TAA
1 TAAA-TT TAAA-TT TAAA-TT TAAATT TAAATT TAAATT TAA
7275579 TATTATATCA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
5 9 0.12
6 44 0.60
7 20 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (6 bp):
TAAATT
Found at i:7276141 original size:21 final size:22
Alignment explanation
Indices: 7276111--7276152 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7276101 AGCGAGTCAC
*
7276111 AAAAAGCGTGAGATTTGATAAG
1 AAAAAGCGTGAGATTTAATAAG
7276133 AAAAA-CGTGAGATTTAATAA
1 AAAAAGCGTGAGATTTAATAA
7276153 TTTAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.50, C:0.05, G:0.21, T:0.24
Consensus pattern (22 bp):
AAAAAGCGTGAGATTTAATAAG
Found at i:7276221 original size:17 final size:19
Alignment explanation
Indices: 7276189--7276246 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
7276179 ATAAATATAA
* *
7276189 TATAAAAATATAATAAAAT
1 TATAAATATTTAATAAAAT
7276208 T-TAAAT-TTTAATAATAAT
1 TATAAATATTTAATAA-AAT
*
7276226 TATATATATTTAATAAAAT
1 TATAAATATTTAATAAAAT
7276245 TA
1 TA
7276247 AAAAATATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 7 0.21
18 8 0.24
19 10 0.30
20 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TATAAATATTTAATAAAAT
Found at i:7276254 original size:20 final size:20
Alignment explanation
Indices: 7276185--7276250 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 20
7276175 TGATATAAAT
7276185 ATAATATAAAAATA--TAATA
1 ATAAT-TAAAAATATTTAATA
*
7276204 A-AATT-TAAAT-TTTAATA
1 ATAATTAAAAATATTTAATA
* *
7276221 ATAATTATATATATTTAATA
1 ATAATTAAAAATATTTAATA
7276241 A-AATTAAAAA
1 ATAATTAAAAA
7276251 ATATATTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
16 4 0.11
17 7 0.18
18 7 0.18
19 12 0.32
20 8 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAATTAAAAATATTTAATA
Found at i:7276262 original size:29 final size:32
Alignment explanation
Indices: 7276221--7276294 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 32
7276211 AATTTTAATA
7276221 ATAATTATATATATTTAATA-AAATTAAAAAAT
1 ATAATTAT-TATATTTAATATAAATTAAAAAAT
* *
7276253 AT-ATT-TTATA-TTAATATTAATTATAAAAT
1 ATAATTATTATATTTAATATAAATTAAAAAAT
7276282 ATAATTATTATAT
1 ATAATTATTATAT
7276295 AATATATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
28 6 0.17
29 16 0.44
30 4 0.11
31 8 0.22
32 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (32 bp):
ATAATTATTATATTTAATATAAATTAAAAAAT
Found at i:7276280 original size:31 final size:30
Alignment explanation
Indices: 7276245--7276347 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 30
7276235 TTAATAAAAT
*
7276245 TAAAAAATATATTTTATATTAATAT-TAATTA
1 TAAAATATATATTTTATA-TAATATATAA-TA
7276276 TAAAATATA-ATTATTATATAATATATAATA
1 TAAAATATATATT-TTATATAATATATAATA
* ** *
7276306 TAAATATATATTTTTTAATATTTTATATGATA
1 TAAA-ATATATATTTT-ATATAATATATAATA
7276338 T-AAATATATA
1 TAAAATATATA
7276348 AATTATCAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
30 21 0.34
31 25 0.41
32 15 0.25
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (30 bp):
TAAAATATATATTTTATATAATATATAATA
Found at i:7276308 original size:30 final size:31
Alignment explanation
Indices: 7276251--7276353 Score: 97
Period size: 32 Copynumber: 3.3 Consensus size: 31
7276241 AAATTAAAAA
7276251 ATAT-ATT-TTATATTAATAT-TAATTATAAA-
1 ATATAATTATTATA-TAATATATAA-TATAAAT
7276280 ATATAATTATTATATAATATATAATATAAAT
1 ATATAATTATTATATAATATATAATATAAAT
* * ** *
7276311 ATATATTTTTTAATATTTTATATGATATAAAT
1 ATATAATTATT-ATATAATATATAATATAAAT
7276343 ATATAAATTAT
1 ATAT-AATTAT
7276354 CAAATTAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
29 4 0.07
30 15 0.25
31 17 0.28
32 21 0.34
33 4 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (31 bp):
ATATAATTATTATATAATATATAATATAAAT
Found at i:7276313 original size:13 final size:13
Alignment explanation
Indices: 7276149--7276315 Score: 59
Period size: 13 Copynumber: 13.2 Consensus size: 13
7276139 GTGAGATTTA
*
7276149 ATAATTTAAA-AT
1 ATAATATAAATAT
*
7276161 ATTATAT-AATGAT
1 ATAATATAAAT-AT
*
7276174 ATGATAT-AA-AT
1 ATAATATAAATAT
*
7276185 ATAATATAAAAAT
1 ATAATATAAATAT
*
7276198 ATAATA-AAATTT
1 ATAATATAAATAT
* *
7276210 A-AATTTTAATA-
1 ATAATATAAATAT
*
7276221 ATAATTATATATAT
1 ATAA-TATAAATAT
* *
7276235 TTAATA-AAATTAA
1 ATAATATAAA-TAT
* **
7276248 AAAATATATTTTAT
1 ATAATATA-AATAT
*
7276262 ATTAATATTAAT-T
1 A-TAATATAAATAT
*
7276275 ATAAAATATAAT-T
1 ATAATATA-AATAT
*
7276288 ATTATAT-AATAT
1 ATAATATAAATAT
7276300 ATAATATAAATAT
1 ATAATATAAATAT
7276313 ATA
1 ATA
7276316 TTTTTTAATA
Statistics
Matches: 111, Mismatches: 29, Indels: 29
0.66 0.17 0.17
Matches are distributed among these distances:
11 17 0.15
12 31 0.28
13 50 0.45
14 8 0.07
15 5 0.05
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (13 bp):
ATAATATAAATAT
Found at i:7276714 original size:19 final size:19
Alignment explanation
Indices: 7276686--7276723 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7276676 GCACAATCTA
7276686 TTAATAATTTTTTAAAATT
1 TTAATAATTTTTTAAAATT
* *
7276705 TTAATTATTTTTTTAAATT
1 TTAATAATTTTTTAAAATT
7276724 CATCTATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTAATAATTTTTTAAAATT
Found at i:7277129 original size:2 final size:2
Alignment explanation
Indices: 7277082--7277114 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
7277072 AGCTCGAATT
*
7277082 TA TA TA TA TA TA TA TA TA TA T- TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7277115 GGTGAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:7277144 original size:16 final size:15
Alignment explanation
Indices: 7277092--7277151 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
7277082 TATATATATA
* *
7277092 TATATATATATTATT
1 TATATATAAATTAAT
** *
7277107 TATATATAGGTGAAT
1 TATATATAAATTAAT
7277122 TATATATAAATTAAT
1 TATATATAAATTAAT
*
7277137 TCATATATATATTAA
1 T-ATATATAAATTAA
7277152 AAATAAAAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
15 24 0.67
16 12 0.33
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (15 bp):
TATATATAAATTAAT
Found at i:7277790 original size:28 final size:29
Alignment explanation
Indices: 7277736--7277790 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
7277726 TTATCAACAA
* * *
7277736 AATATCAAAAATAAATATAATTTCATTGC
1 AATATAAAAAATAAATATAAATACATTGC
7277765 AATATAAAAAAT-AATATAAATACATT
1 AATATAAAAAATAAATATAAATACATT
7277791 CAAAGGTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (29 bp):
AATATAAAAAATAAATATAAATACATTGC
Found at i:7281296 original size:2 final size:2
Alignment explanation
Indices: 7281291--7281325 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7281281 AAAAAAAAAA
*
7281291 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7281326 AACTTTGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7282421 original size:18 final size:18
Alignment explanation
Indices: 7282398--7282432 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7282388 CCTCAAAAGA
7282398 TTTCTTTTTCTCCTCCTT
1 TTTCTTTTTCTCCTCCTT
*
7282416 TTTCTTTTTCTCTTCCT
1 TTTCTTTTTCTCCTCCT
7282433 CACTCTCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTCTTTTTCTCCTCCTT
Found at i:7284724 original size:6 final size:6
Alignment explanation
Indices: 7284713--7284739 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7284703 CTTTGCTTGG
7284713 TGAGAA TGAGAA TGAGAA TGAGAA TGA
1 TGAGAA TGAGAA TGAGAA TGAGAA TGA
7284740 TATAACAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.33, T:0.19
Consensus pattern (6 bp):
TGAGAA
Found at i:7287005 original size:103 final size:101
Alignment explanation
Indices: 7286754--7287029 Score: 276
Period size: 100 Copynumber: 2.7 Consensus size: 101
7286744 ATAATTTTTT
* * * * * * *
7286754 ATAATAATAAAAATTTCAATCCTACTAAATTGTTGGAGGATTTAAATCTTGAATTAAGTCTTA-T
1 ATAATAAT-AAAA-TTGAATCATACCAAACTATTGGAGAATTTAAATATTGAATTAAGTCTTACT
* * *
7286818 CAAACTA-TTGAAGGACTTAATGAACTTTTTTTTAAATA
64 -AAACTATTTGAAGGACTTAATGAACTTTTTGTAAAAAA
* *
7286856 ATAATAATAAAATTGAATCCTACCAAACTATT-GAAATATTTAAATATTGAATTAAGTCTTACTA
1 ATAATAATAAAATTGAATCATACCAAACTATTGGAGA-ATTTAAATATTGAATTAAGTCTTACTA
* *
7286920 AAGTATTTGAA-GACTTAATTAA-TTTTTGTAAAAAA
65 AACTATTTGAAGGACTTAATGAACTTTTTGTAAAAAA
* *
7286955 ATAATAATAAATTTTTTTTAATCATACCAAACTATTGGAGAATTTAAATATTGAATT-AGATCTT
1 ATAATAATAAA----ATTGAATCATACCAAACTATTGGAGAATTTAAATATTGAATTAAG-TCTT
*
7287019 ACCAAACTATT
61 ACTAAACTATT
7287030 AAAAGGTTTA
Statistics
Matches: 147, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
99 23 0.16
100 54 0.37
101 10 0.07
102 10 0.07
103 47 0.32
104 3 0.02
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (101 bp):
ATAATAATAAAATTGAATCATACCAAACTATTGGAGAATTTAAATATTGAATTAAGTCTTACTAA
ACTATTTGAAGGACTTAATGAACTTTTTGTAAAAAA
Found at i:7287041 original size:103 final size:98
Alignment explanation
Indices: 7286754--7287048 Score: 279
Period size: 103 Copynumber: 2.9 Consensus size: 98
7286744 ATAATTTTTT
* * * * * * * *
7286754 ATAATAATAAAAATTTCAATCCTACTAAATTGTTGGAGGATTTAAATCTTGAATTAAGTCTTATC
1 ATAATAAT-AAAA-TTGAATCATACCAAACTATTGGAGAATTTAAATATTGAATTAAGTCTTACC
* * *
7286819 AAACTATTGAAGGACTTAATGAACTTTTTTTTAAATA
64 AAACTATTGAAGG-CTTAATGAA-TTTTTGTAAAAAA
* * *
7286856 ATAATAATAAAATTGAATCCTACCAAACTATT-GAAATATTTAAATATTGAATTAAGTCTTACTA
1 ATAATAATAAAATTGAATCATACCAAACTATTGGAGA-ATTTAAATATTGAATTAAGTCTTACCA
* * *
7286920 AAGTATTTGAAGACTTAATTAATTTTTGTAAAAAA
65 AACTA-TTGAAGGCTTAATGAATTTTTGTAAAAAA
* *
7286955 ATAATAATAAATTTTTTTTAATCATACCAAACTATTGGAGAATTTAAATATTGAATT-AGATCTT
1 ATAATAATAAA----ATTGAATCATACCAAACTATTGGAGAATTTAAATATTGAATTAAG-TCTT
* *
7287019 ACCAAACTATTAAAAGGTTTAATGAATTTT
61 ACCAAACTATT-GAAGGCTTAATGAATTTT
7287049 CTTAAAATAA
Statistics
Matches: 159, Mismatches: 25, Indels: 17
0.79 0.12 0.08
Matches are distributed among these distances:
99 23 0.14
100 52 0.33
101 10 0.06
102 12 0.08
103 59 0.37
104 3 0.02
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (98 bp):
ATAATAATAAAATTGAATCATACCAAACTATTGGAGAATTTAAATATTGAATTAAGTCTTACCAA
ACTATTGAAGGCTTAATGAATTTTTGTAAAAAA
Found at i:7292000 original size:23 final size:23
Alignment explanation
Indices: 7291955--7292000 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7291945 TGGTATAAAA
* *
7291955 TTCATGCATTGCATTCATTACAT
1 TTCATGCATTGCATACATCACAT
* *
7291978 TTCATGTATTGTATACATCACAT
1 TTCATGCATTGCATACATCACAT
7292001 CCATTTCATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (23 bp):
TTCATGCATTGCATACATCACAT
Found at i:7292407 original size:83 final size:82
Alignment explanation
Indices: 7292316--7292489 Score: 192
Period size: 83 Copynumber: 2.1 Consensus size: 82
7292306 CAAAGTTTGG
* * * * **
7292316 TTTGTAAGACATCTAGATGTAATC-CTTAAATTTTTCGGACAAGATTTGTAAGTCTTT-CGAGCT
1 TTTGTAAGACATCTAGATGCAATCTC-TAAATCTTT--AAAAAGATTCATAAGT-TTTACGAGCT
*
7292379 -AATCTATTTTAGAATCGAGA
62 GAATCTATTTTAAAATCGAGA
* * *
7292399 TTTGTAAGACCTTTAGATGCAATCTCTAAGTCTTTAAAAAGATTCATAAGTTTTACGAGCTGAAT
1 TTTGTAAGACATCTAGATGCAATCTCTAAATCTTTAAAAAGATTCATAAGTTTTACGAGCTGAAT
7292464 CTATTTTAAAATCGAGA
66 CTATTTTAAAATCGAGA
*
7292481 TTTATAAGA
1 TTTGTAAGA
7292490 GCTCTAGGTA
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
80 3 0.04
81 18 0.23
82 27 0.35
83 28 0.36
84 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.38
Consensus pattern (82 bp):
TTTGTAAGACATCTAGATGCAATCTCTAAATCTTTAAAAAGATTCATAAGTTTTACGAGCTGAAT
CTATTTTAAAATCGAGA
Found at i:7293588 original size:144 final size:147
Alignment explanation
Indices: 7293339--7293630 Score: 509
Period size: 144 Copynumber: 2.0 Consensus size: 147
7293329 ATTAAAAAAA
*
7293339 AAATCAATTCAGAGCACAATCATATTTATAATCATTTCCATTAATTGCAAATCCTTAAAATTCCT
1 AAATCAATTCAGAGCACAATCATATTTATAATCATTTCCATTAATTGCAAATCCCTAAAATTCCT
7293404 AACATAATGTCCTATATAAACACCAATCAATCAC-AAAAAAAAAAA-AAATGAGGAAAAAAAAGA
66 AACATAATGTCCTATATAAACACCAATCAATCACAAAAAAAAAAAAGAAATGAGGAAAAAAAAGA
7293467 GAAACCC-TAAAGAGAG
131 GAAACCCATAAAGAGAG
*
7293483 AAATCAATTCAGAGCACAATCATATTTATAATCATTTCCATTAATTTCAAATCCCTAAAATTCCT
1 AAATCAATTCAGAGCACAATCATATTTATAATCATTTCCATTAATTGCAAATCCCTAAAATTCCT
7293548 AACATAATGTCCTATATAAACACCAATCAATCACAAAAAAAAAAAAAAATGAAATGAGGAAAAAA
66 AACATAATGTCCTATATAAACACCAATCAATCAC---AAAAAAAAAAAA-GAAATGAGGAAAAAA
7293613 AAGAGAAACCCATAAAGA
127 AAGAGAAACCCATAAAGA
7293631 AATGGATGAG
Statistics
Matches: 139, Mismatches: 2, Indels: 7
0.94 0.01 0.05
Matches are distributed among these distances:
144 97 0.70
148 11 0.08
150 25 0.18
151 6 0.04
ACGTcount: A:0.52, C:0.17, G:0.08, T:0.23
Consensus pattern (147 bp):
AAATCAATTCAGAGCACAATCATATTTATAATCATTTCCATTAATTGCAAATCCCTAAAATTCCT
AACATAATGTCCTATATAAACACCAATCAATCACAAAAAAAAAAAAGAAATGAGGAAAAAAAAGA
GAAACCCATAAAGAGAG
Found at i:7294083 original size:101 final size:103
Alignment explanation
Indices: 7293952--7294233 Score: 304
Period size: 101 Copynumber: 2.7 Consensus size: 103
7293942 TAATTTTTTT
* * * * *
7293952 ATAATAATAAAATCTTCAATCATACTAAACTATTGGAAGATTTAAATTTTGAATTAAGTTTTATC
1 ATAATAATAAAATTTTCAATCTTACCAAACTATTGGAAGATTTAAATATTGAATTAAGTTTTACC
* *
7294017 AAACTATTGAAATACTTAATGAATTATT-T-AAAAATA
66 AAACTATTGAAAGACTTAATGAATTATTGTAAAAAAAA
* * * * *
7294053 CTAATAATAAAATTTTTAATCTTACCAAACTATT-GAAGGATTTAAATCTTGAATTAAGTCTTGC
1 ATAATAATAAAATTTTCAATCTTACCAAACTATTGGAA-GATTTAAATATTGAATTAAGTTTTAC
* * * *
7294117 CAAAATATTG-AGGGCTTAATGAATTTTTGTAAAAAAAA
65 CAAACTATTGAAAGACTTAATGAATTATTGTAAAAAAAA
* * * **
7294155 AAAACAATAAAAATTATTCAAT-TATACCAAACTATTGGAGGATTTAAATATTGAATTAAAATTT
1 ATAATAAT-AAAATT-TTCAATCT-TACCAAACTATTGGAAGATTTAAATATTGAATTAAGTTTT
7294219 ACCAAACTATTGAAA
63 ACCAAACTATTGAAA
7294234 AGTTTAATAA
Statistics
Matches: 146, Mismatches: 27, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
100 17 0.12
101 61 0.42
102 11 0.08
103 7 0.05
104 47 0.32
105 3 0.02
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (103 bp):
ATAATAATAAAATTTTCAATCTTACCAAACTATTGGAAGATTTAAATATTGAATTAAGTTTTACC
AAACTATTGAAAGACTTAATGAATTATTGTAAAAAAAA
Found at i:7295609 original size:51 final size:53
Alignment explanation
Indices: 7295531--7295634 Score: 149
Period size: 51 Copynumber: 2.0 Consensus size: 53
7295521 TATAAGCATA
* * *
7295531 CAAACTTACCTATTACGAATCTCTTTTCTCTTA-AATTTTTC-TTCTACAAGT
1 CAAACTTACCTATTAAGAATATCTTTTCTCTTATAATTCTTCATTCTACAAGT
* *
7295582 CAAACTTACCTATTAAGAATATTTTTTCTTTTATAATTCTTCATTCTACAAGT
1 CAAACTTACCTATTAAGAATATCTTTTCTCTTATAATTCTTCATTCTACAAGT
7295635 TTTTTTGTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
51 29 0.63
52 7 0.15
53 10 0.22
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (53 bp):
CAAACTTACCTATTAAGAATATCTTTTCTCTTATAATTCTTCATTCTACAAGT
Found at i:7298541 original size:13 final size:13
Alignment explanation
Indices: 7298523--7298547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7298513 GCAGAAGCAA
7298523 AAAAAAAAAAATC
1 AAAAAAAAAAATC
7298536 AAAAAAAAAAAT
1 AAAAAAAAAAAT
7298548 TTTGGTGAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAAAAAAAAATC
Found at i:7298990 original size:45 final size:45
Alignment explanation
Indices: 7298939--7299024 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
7298929 GACCTACATG
*
7298939 ATTTGGTAGGGCAAGTTTCACTAAGTTGAGTTTAAAGTCTACGTA
1 ATTTGGTAGAGCAAGTTTCACTAAGTTGAGTTTAAAGTCTACGTA
*
7298984 ATTTGGTAGAGCAGGTTTCACTAAGTTGAGTTTAAAGTCTA
1 ATTTGGTAGAGCAAGTTTCACTAAGTTGAGTTTAAAGTCTA
7299025 TATCTTTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.36
Consensus pattern (45 bp):
ATTTGGTAGAGCAAGTTTCACTAAGTTGAGTTTAAAGTCTACGTA
Found at i:7304737 original size:23 final size:22
Alignment explanation
Indices: 7304688--7304730 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7304678 TTCTACAAGC
*
7304688 AAAAAAAAAAAACTACAATAAT
1 AAAAAAAAAAAAATACAATAAT
*
7304710 GAAAAAATAAAAAATACAATA
1 -AAAAAAAAAAAAATACAATA
7304731 CAAAAAACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14
Consensus pattern (22 bp):
AAAAAAAAAAAAATACAATAAT
Found at i:7308074 original size:19 final size:20
Alignment explanation
Indices: 7308047--7308091 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
7308037 CTGAACTTTA
*
7308047 CAGTACTTAAAAATT-TTTT
1 CAGTTCTTAAAAATTATTTT
7308066 CAGTTCTTAAAAATTAATTTT
1 CAGTTCTTAAAAATT-ATTTT
7308087 CAGTT
1 CAGTT
7308092 AGTGGAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.61
21 9 0.39
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.47
Consensus pattern (20 bp):
CAGTTCTTAAAAATTATTTT
Found at i:7314925 original size:22 final size:21
Alignment explanation
Indices: 7314894--7314939 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
7314884 TTTATGATTT
7314894 TTAATATTAAAAAATATAAAAA
1 TTAATATTAAAAAATA-AAAAA
* *
7314916 TTAATTTTAAAATATAAAAAA
1 TTAATATTAAAAAATAAAAAA
7314937 TTA
1 TTA
7314940 TATGTTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TTAATATTAAAAAATAAAAAA
Found at i:7318526 original size:16 final size:15
Alignment explanation
Indices: 7318505--7318534 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
7318495 TATACATATT
7318505 TAATATAAAATAAATA
1 TAATAT-AAATAAATA
7318521 TAATATAAATAAAT
1 TAATATAAATAAAT
7318535 GAATTATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATATAAATAAATA
Found at i:7323446 original size:17 final size:16
Alignment explanation
Indices: 7323424--7323460 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
7323414 AATTAAATCG
*
7323424 AATTATATATTTTTATT
1 AATTATATATATTT-TT
7323441 AATTATATATATTTTT
1 AATTATATATATTTTT
7323457 AATT
1 AATT
7323461 TTTATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
AATTATATATATTTTT
Found at i:7325620 original size:11 final size:12
Alignment explanation
Indices: 7325593--7325622 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7325583 TTATTAGAAA
7325593 ATAATTTTTAAT
1 ATAATTTTTAAT
7325605 ATAATTTTTAAT
1 ATAATTTTTAAT
7325617 -TAATTT
1 ATAATTT
7325623 AACCTTAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.33
12 12 0.67
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
ATAATTTTTAAT
Found at i:7325717 original size:16 final size:15
Alignment explanation
Indices: 7325674--7325720 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
7325664 AATAGTAAAA
*
7325674 ATTTTCAAA-AATTT
1 ATTTTTAAAGAATTT
* *
7325688 ATTTTTTAATAATTT
1 ATTTTTAAAGAATTT
7325703 ATTTTTAAAAGAATTT
1 ATTTTT-AAAGAATTT
7325719 AT
1 AT
7325721 ATTATAATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 7 0.26
15 11 0.41
16 9 0.33
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTTTAAAGAATTT
Found at i:7331958 original size:24 final size:24
Alignment explanation
Indices: 7331931--7331988 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
7331921 ACTCAATAAT
*
7331931 ATATTAAGTACACGTAGTGTATTC
1 ATATTAAGTACACGTAATGTATTC
7331955 ATATTAAGTACACGTAATGTATTC
1 ATATTAAGTACACGTAATGTATTC
7331979 ATATTAAGTA
1 ATATTAAGTA
7331989 TATCAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (24 bp):
ATATTAAGTACACGTAATGTATTC
Found at i:7333042 original size:186 final size:184
Alignment explanation
Indices: 7332494--7334005 Score: 1377
Period size: 187 Copynumber: 8.2 Consensus size: 184
7332484 AATGACACCT
* * * * * *
7332494 ATTTCAAAAGAAAATTATTGAACACGTTTGTTATAAAAAAATGCCTACAATAATTATGTATGTAA
1 ATTTTAAAA-AAAATTATTGAACGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAA
* * * * * * * *
7332559 ATTAGAAGAAATTAATGAATGTATTTTTTTAGAATAAACGCTTTTACTAATCGT-TTGAAATTTT
65 ATTAAAAGAAATTAGTGAATGTATTTTTCTAGAATAAACAC-CTTACTAACCATCTT-AAAATTT
* * *** * *
7332623 GAGTTGTGAAAATTTGAAGTTGTTTTTCACTAAAAAATACCTTTAATAATCTTAAAA
128 GAGTTGTAAAAAATTGAAGGCATTTTTCACTGAAAGATACCTTTAATAATCTTAAAA
* * *
7332680 ATTTTAAGAGAAAATTATTGAAGGCGTTTGTTCTCAAAAAATACCTTCAATAATTATGTACGTAA
1 ATTTTAA-AAAAAATTATTGAACGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGT--
* * ** * * *
7332745 AAATTAAAAGGAATTAGTGAATGTATTTTTTTAGAATAAATGCCTTCATTAA-TAGTCTTAAATT
63 AAATTAAAAGAAATTAGTGAATGTATTTTTCTAGAATAAACACCTT-ACTAACCA-TCTTAAAAT
* * * **
7332809 TTGAGTTGTAAAATATTGAAGACGTTTTTCACTGAAAGACGCCTTTAATAATCTTAAAA
126 TTGAGTTGTAAAAAATTGAAGGCATTTTTCACTGAAAGATACCTTTAATAATCTTAAAA
* * *
7332868 ATTTTAAAAATAAATTATTAAACGCGTTTGTTCTAAAAAAATGCCTTCAATAATTATGTATGTAA
1 ATTTTAAAAA-AAATTATTGAACGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAA
* * *
7332933 ATTAAAAGAAATTAGTGAAGGCATTTTTCTAGAATAAACACCTGTACTAACCATCTTAAAATTTA
65 ATTAAAAGAAATTAGTGAATGTATTTTTCTAGAATAAACACCT-TACTAACCATCTTAAAATTTG
* *
7332998 AATTGTAAAAAATTGAAGGTATTTTTCACTGAAAGATACCTTTAATAATAC-TAAAA
129 AGTTGTAAAAAATTGAAGGCATTTTTCACTGAAAGATACCTTTAATAAT-CTTAAAA
* * * * * * *
7333054 ATTTTAAGAAAAAAATTATTAAATGCATTTGTTCTTAAAAAACACATTCAATAATTATGTACATA
1 ATTTT-A-AAAAAAATTATTGAACGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTA
* * * * ***
7333119 AATTAAAA-AGAATTAATGAAGGTATTTTTTTAGAATAAACACATTCACTAATTGTCTTAAAATT
64 AATTAAAAGA-AATTAGTGAATGTATTTTTCTAGAATAAACACCTT-ACTAACCATCTTAAAATT
* * * * ***
7333183 TGAGTTATGAAATATTGAAGACATTTTTCACTGAAAGACGTCTTTAATAATCTTAAAA
127 TGAGTTGTAAAAAATTGAAGGCATTTTTCACTGAAAGATACCTTTAATAATCTTAAAA
* ** **
7333241 TTTTTTTAAAAAATTATTGAAC-CTGTTTGTTCTAAAAAAATACCTTCAATAATTATGTATATAA
1 ATTTTAAAAAAAATTATTGAACGC-GTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAA
* ** *
7333305 ATTAGAAAG-AATTAGTGAATGCATTTTTCTAGAATAAATGCCTTTACTAACCGTCTTAAAATTT
65 ATTA-AAAGAAATTAGTGAATGTATTTTTCTAGAATAAACACC-TTACTAACCATCTTAAAATTT
* * ** *
7333369 GAGTTGTGAAAAATTAAAGGCATTTTTCACTGAAAGAGGCCTTTAATAATCTCAAAA
128 GAGTTGTAAAAAATTGAAGGCATTTTTCACTGAAAGATACCTTTAATAATCTTAAAA
* * * * * * * *
7333426 ATTTTAGTAAAAAACTATTGAAGGCATTTATTCTAAAACAATACCTTTAATAATTATGTATGT-A
1 ATTTTA-AAAAAAATTATTGAACGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAA
*
7333490 ATTAAAAGAAATTAGTGAA-G-----GTCT----T---CA-C-TA--AA-CATCTTAAAATTTGA
65 ATTAAAAGAAATTAGTGAATGTATTTTTCTAGAATAAACACCTTACTAACCATCTTAAAATTTGA
* * * *
7333537 GTTGTGAAATATTGAAGGCGTTTTTCACT-AGAAGATACCTTTAATAATCCTAAAAA
130 GTTGTAAAAAATTGAAGGCATTTTTCACTGA-AAGATACCTTTAATAAT-CTTAAAA
*** * * * * ** * *
7333593 ATTTTTTTAAAATTTTTTGAATGTGTTTGTTCCCAAAAAATGCATTCAATAATTATGTACGTAAA
1 ATTTTAAAAAAAATTATTGAACGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAA
* * * *
7333658 TTAGAAGGAATTAGTGAATGTATTTTTTTAGAATAAACACCTTTATTAACCATCTTAAAATTTGA
66 TTAAAAGAAATTAGTGAATGTATTTTTCTAGAATAAACACC-TTACTAACCATCTTAAAATTTGA
* * * *
7333723 GTTGTAAAAAATTAAAGGCTTTTTTCACTTAAAGATACCTTTAATAATCCTAAAA
130 GTTGTAAAAAATTGAAGGCATTTTTCACTGAAAGATACCTTTAATAATCTTAAAA
* * * * * * *
7333778 ACTTTAAGAGAAAATTATTGAAGGCCTTTATTCTCAAAAAAATATCTTCAATAATTATGTACATA
1 ATTTTAA-AAAAAATTATTGAACGCGTTTGTTCT-AAAAAAATACCTTCAATAATTATGTACGTA
* * ** ** * * * *
7333843 AATTAAAAAAAATTAGTGAAAGCGTTTTTCTAGAGCAAATACCTTCATTAACCGTATTAAAATTT
64 AATTAAAAGAAATTAGTGAATGTATTTTTCTAGAATAAACACCTT-ACTAACCATCTTAAAATTT
* * ** *
7333908 GAGTTGTGAAATATTGAAGGCATTTTTCACT-AGAAGACGCCTTTAATAATCTCAAAA
128 GAGTTGTAAAAAATTGAAGGCATTTTTCACTGA-AAGATACCTTTAATAATCTTAAAA
* *
7333965 ATTTTAAAAGAAAATTATTGAACACGTTTGTTCTCAAAAAA
1 ATTTTAAAA-AAAATTATTGAACGCGTTTGTTCTAAAAAAA
7334006 CGCCTTCACT
Statistics
Matches: 1087, Mismatches: 189, Indels: 100
0.79 0.14 0.07
Matches are distributed among these distances:
165 1 0.00
166 96 0.09
167 31 0.03
168 1 0.00
169 2 0.00
171 1 0.00
173 2 0.00
175 1 0.00
177 1 0.00
179 3 0.00
180 2 0.00
181 1 0.00
183 2 0.00
184 6 0.01
185 175 0.16
186 296 0.27
187 307 0.28
188 157 0.14
189 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (184 bp):
ATTTTAAAAAAAATTATTGAACGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAA
TTAAAAGAAATTAGTGAATGTATTTTTCTAGAATAAACACCTTACTAACCATCTTAAAATTTGAG
TTGTAAAAAATTGAAGGCATTTTTCACTGAAAGATACCTTTAATAATCTTAAAA
Found at i:7333646 original size:166 final size:167
Alignment explanation
Indices: 7333358--7333862 Score: 383
Period size: 166 Copynumber: 2.9 Consensus size: 167
7333348 TTACTAACCG
* *
7333358 TCTTAAAATTTGAGTTGTGAAAAATTAAAGGCATTTTTCACTGAAAGAGGCCTTTAATAATCTCA
1 TCTTAAAATTTGAGTTGTGAAAAATTAAAGGCATTTTTCACTGAAAGAGACCTTTAATAATCTAA
* * * *
7333423 AAAATTTTAGTAAAAAACTATTGAAGGCATTTATTCTAAAACAATACCTTTAATAATTATGTATG
66 AAAATTTTAGTAAAAAACTATTGAAGGCATTTATTCCAAAACAATACATTCAATAATTATGTACG
7333488 T-AATTAAAAGAAATTAGTGAAGGTCTTCACTAAACA
131 TAAATTAAAAGAAATTAGTGAAGGTCTTCACTAAACA
* * * *
7333524 TCTTAAAATTTGAGTTGTGAAATATTGAAGGCGTTTTTCACT-AGAAGATACCTTTAATAATCCT
1 TCTTAAAATTTGAGTTGTGAAAAATTAAAGGCATTTTTCACTGA-AAGAGACCTTTAATAAT-CT
* * ** * * ** * *
7333588 AAAAAATTTT-TTTAAAATTTTTTGAATGTGTTTGTTCCCAAAA-AATGCATTCAATAATTATGT
64 AAAAAATTTTAGTAAAAAACTATTGAAGGCATTTATT-CCAAAACAATACATTCAATAATTATGT
* * * * * *
7333651 ACGTAAATTAGAAGGAATTAGTGAATGTATTTTTTTAGAATAAACA
128 ACGTAAATTAAAAGAAATTAGTGAA-G----GTCTT-CACTAAACA
* * * * * *
7333697 CCTTTATTAACCATCTTAAAATTTGAGTTGTAAAAAATTAAAGGCTTTTTTCACTTAAAGATACC
1 TC-TTA--AA--AT-TT--GAGTT--G-TG-AAAA-ATTAAAGGCATTTTTCACTGAAAGAGACC
* * * * * *
7333762 TTTAATAATCCTAAAAACTTTAAG-AGAAAATTATTGAAGGCCTTTATTCTCAAAAAAATATC-T
53 TTTAATAAT-CTAAAAAATTTTAGTAAAAAACTATTGAAGGCATTTATTC-CAAAACAATA-CAT
* *
7333825 TCAATAATTATGTACATAAATTAAAAAAAATTAGTGAA
115 TCAATAATTATGTACGTAAATTAAAAGAAATTAGTGAA
7333863 AGCGTTTTTC
Statistics
Matches: 263, Mismatches: 48, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
165 1 0.00
166 91 0.35
167 34 0.13
168 1 0.00
172 3 0.01
173 8 0.03
174 3 0.01
176 2 0.01
178 2 0.01
179 2 0.01
181 3 0.01
183 1 0.00
184 2 0.01
185 4 0.02
186 66 0.25
187 39 0.15
188 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (167 bp):
TCTTAAAATTTGAGTTGTGAAAAATTAAAGGCATTTTTCACTGAAAGAGACCTTTAATAATCTAA
AAAATTTTAGTAAAAAACTATTGAAGGCATTTATTCCAAAACAATACATTCAATAATTATGTACG
TAAATTAAAAGAAATTAGTGAAGGTCTTCACTAAACA
Found at i:7338759 original size:31 final size:30
Alignment explanation
Indices: 7338724--7338782 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
7338714 ACAAATGTGG
7338724 CTAATATAACAGTA-TTTTATAGAAAATGCTA
1 CTAATATAAC-G-ACTTTTATAGAAAATGCTA
*
7338755 CTAATGTAACGACGTTTTATAGAAAATG
1 CTAATATAACGAC-TTTTATAGAAAATG
7338783 TCACTATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 1 0.04
30 1 0.04
31 23 0.92
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (30 bp):
CTAATATAACGACTTTTATAGAAAATGCTA
Found at i:7346413 original size:33 final size:33
Alignment explanation
Indices: 7346350--7346418 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
7346340 ATTATGCCAA
* * * *
7346350 GAATTCTGTTGTAGTGGTTGTTCTGAATCTTGT
1 GAATTCTGTTGCAATGGTCGTTCTCAATCTTGT
7346383 GAATTCTGTTGCAATGGTCGTTC-CACATCTTGT
1 GAATTCTGTTGCAATGGTCGTTCTCA-ATCTTGT
7346416 GAA
1 GAA
7346419 CCCAGTCGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.19, C:0.14, G:0.25, T:0.42
Consensus pattern (33 bp):
GAATTCTGTTGCAATGGTCGTTCTCAATCTTGT
Found at i:7348633 original size:2 final size:2
Alignment explanation
Indices: 7348626--7348655 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7348616 TCCATATAAA
7348626 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7348656 CTAAAGCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7356120 original size:33 final size:32
Alignment explanation
Indices: 7356060--7356136 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 32
7356050 ATTCATAAAC
* ** *
7356060 AAATTTAATTAATATTTATAAGTTTATTTATT
1 AAATTTAATAAATATTTATAAAATTATTAATT
*
7356092 AAATTTAATAAAATATTTTTAAAATTATTAATT
1 AAATTTAAT-AAATATTTATAAAATTATTAATT
*
7356125 AAA-TAAATAAAT
1 AAATTTAATAAAT
7356137 TACAAATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
31 4 0.11
32 13 0.34
33 21 0.55
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (32 bp):
AAATTTAATAAATATTTATAAAATTATTAATT
Found at i:7356194 original size:23 final size:24
Alignment explanation
Indices: 7356146--7356195 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
7356136 TTACAAATAT
* *
7356146 AATAATATTTGTTTTTATACTGAA
1 AATAATATTTGTTTTAAAACTGAA
7356170 AATAATGA-TTGTTTTAAAACT-AA
1 AATAAT-ATTTGTTTTAAAACTGAA
7356193 AAT
1 AAT
7356196 TTGCGTTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.22
24 17 0.74
25 1 0.04
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (24 bp):
AATAATATTTGTTTTAAAACTGAA
Found at i:7356563 original size:10 final size:10
Alignment explanation
Indices: 7356537--7356570 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7356527 ATATTTAAGC
7356537 TTTTTTAAAA
1 TTTTTTAAAA
7356547 TTGTTTTAAAA
1 TT-TTTTAAAA
*
7356558 TTTTTTAGAA
1 TTTTTTAAAA
7356568 TTT
1 TTT
7356571 AAATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:7357025 original size:14 final size:14
Alignment explanation
Indices: 7357003--7357039 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
7356993 GATTAAATCA
7357003 AAATT-AAAATAAT
1 AAATTCAAAATAAT
7357016 AAATTCAAAATAAT
1 AAATTCAAAATAAT
7357030 AAATTCAAAA
1 AAATTCAAAA
7357040 ATTTTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (14 bp):
AAATTCAAAATAAT
Found at i:7361441 original size:47 final size:45
Alignment explanation
Indices: 7361390--7361480 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
7361380 AAGAAATGGG
* * *
7361390 TTTTTAACCTATGAGATGCATAAAATTTTTTA-TTATATTTTTATAAC
1 TTTTTAACATATGAGAT--ACAAAATCTTTTATTTAT-TTTTTATAAC
*
7361437 TTTTTGACATATGAGATACAAAATCTTTTATTTATTTTTTATAA
1 TTTTTAACATATGAGATACAAAATCTTTTATTTATTTTTTATAA
7361481 TATGTGCATC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
45 20 0.51
46 4 0.10
47 15 0.38
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.52
Consensus pattern (45 bp):
TTTTTAACATATGAGATACAAAATCTTTTATTTATTTTTTATAAC
Found at i:7361927 original size:16 final size:16
Alignment explanation
Indices: 7361886--7361916 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7361876 TTATTTGAAA
7361886 TTAATT-TTTTATAAT
1 TTAATTCTTTTATAAT
7361901 TTAATTCTTTTATAAT
1 TTAATTCTTTTATAAT
7361917 ATTATTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAATTCTTTTATAAT
Found at i:7362526 original size:13 final size:13
Alignment explanation
Indices: 7362494--7362529 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 13
7362484 GATATTTGAT
7362494 ATTTTAATTGAAA
1 ATTTTAATTGAAA
7362507 ATTTTTTAATTGAAA
1 A--TTTTAATTGAAA
7362522 ATTTTAAT
1 ATTTTAAT
7362530 ATTATTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 8 0.38
15 13 0.62
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (13 bp):
ATTTTAATTGAAA
Found at i:7362526 original size:14 final size:15
Alignment explanation
Indices: 7362495--7362526 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7362485 ATATTTGATA
7362495 TTTTAATTGAAAATT
1 TTTTAATTGAAAATT
7362510 TTTTAATTGAAAATT
1 TTTTAATTGAAAATT
7362525 TT
1 TT
7362527 AATATTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (15 bp):
TTTTAATTGAAAATT
Found at i:7368876 original size:10 final size:10
Alignment explanation
Indices: 7368861--7368888 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
7368851 AAATTAAATA
7368861 ATATTTAATT
1 ATATTTAATT
7368871 ATATTTAATT
1 ATATTTAATT
7368881 ATATTTAA
1 ATATTTAA
7368889 ATAAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
ATATTTAATT
Found at i:7374068 original size:24 final size:24
Alignment explanation
Indices: 7374036--7374084 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7374026 ACTGATAGCT
7374036 AAAGCTCTTGCAGTATCCTTTACC
1 AAAGCTCTTGCAGTATCCTTTACC
7374060 AAAGCTCTTGCAGTATCCTTTACC
1 AAAGCTCTTGCAGTATCCTTTACC
7374084 A
1 A
7374085 TCTGCAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (24 bp):
AAAGCTCTTGCAGTATCCTTTACC
Found at i:7377185 original size:6 final size:7
Alignment explanation
Indices: 7377118--7377184 Score: 62
Period size: 7 Copynumber: 8.7 Consensus size: 7
7377108 TATCTAATTA
7377118 AAAAAAT
1 AAAAAAT
7377125 AAAAAAT
1 AAAAAAT
7377132 AAAAAAATCT
1 -AAAAAA--T
*
7377142 AAAATAGT
1 AAAA-AAT
7377150 AAAAAAT
1 AAAAAAT
*
7377157 GAAAAAAAC
1 --AAAAAAT
7377166 AAAAAAT
1 AAAAAAT
7377173 AAAAAAT
1 AAAAAAT
7377180 AAAAA
1 AAAAA
7377185 TGCTTCTTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
7 27 0.54
8 11 0.22
9 10 0.20
10 2 0.04
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.13
Consensus pattern (7 bp):
AAAAAAT
Found at i:7377495 original size:7 final size:7
Alignment explanation
Indices: 7377483--7377548 Score: 51
Period size: 7 Copynumber: 8.9 Consensus size: 7
7377473 CTAAAAGCCC
7377483 AAAAAAT
1 AAAAAAT
7377490 AAAAAAT
1 AAAAAAT
*
7377497 AAGAAAAGGAA
1 -A-AAAA--AT
*
7377508 AAAAAAC
1 AAAAAAT
7377515 AAAAAAT
1 AAAAAAT
*
7377522 TAAAAAT
1 AAAAAAT
* *
7377529 TAAAAAC
1 AAAAAAT
7377536 AAAAAAT
1 AAAAAAT
7377543 AAAAAA
1 AAAAAA
7377549 AGAGATCATA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
7 37 0.77
8 1 0.02
9 8 0.17
10 1 0.02
11 1 0.02
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:7377535 original size:21 final size:21
Alignment explanation
Indices: 7377509--7377548 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7377499 GAAAAGGAAA
*
7377509 AAAAACAAAAAATTAAAAATT
1 AAAAACAAAAAATAAAAAATT
7377530 AAAAACAAAAAATAAAAAA
1 AAAAACAAAAAATAAAAAA
7377549 AGAGATCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAAACAAAAAATAAAAAATT
Found at i:7378316 original size:15 final size:16
Alignment explanation
Indices: 7378296--7378328 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7378286 TCATTTTGTT
7378296 TTAAAA-TTTATCTAA
1 TTAAAATTTTATCTAA
7378311 TTAAAATTTTATCTAA
1 TTAAAATTTTATCTAA
7378327 TT
1 TT
7378329 TTAAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAAATTTTATCTAA
Found at i:7378891 original size:16 final size:16
Alignment explanation
Indices: 7378872--7378905 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7378862 TAAAATTATC
7378872 AAAT-CAAAAAACAAAA
1 AAATACAAAAAA-AAAA
7378888 AAATACAAAAAAAAAA
1 AAATACAAAAAAAAAA
7378904 AA
1 AA
7378906 CTGAGGGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.85, C:0.09, G:0.00, T:0.06
Consensus pattern (16 bp):
AAATACAAAAAAAAAA
Found at i:7378995 original size:19 final size:20
Alignment explanation
Indices: 7378971--7379021 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
7378961 AATTAAAAAT
7378971 TAAAAAATAAAAAAGGA-AA
1 TAAAAAATAAAAAAGGACAA
* *
7378990 TAAAAAAGAGAAAAGGACAA
1 TAAAAAATAAAAAAGGACAA
*
7379010 AAAAAAATAAAA
1 TAAAAAATAAAA
7379022 GAAGAAGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.78, C:0.02, G:0.12, T:0.08
Consensus pattern (20 bp):
TAAAAAATAAAAAAGGACAA
Found at i:7383408 original size:8 final size:8
Alignment explanation
Indices: 7383395--7383423 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7383385 TGAATTAATT
7383395 TATATTTA
1 TATATTTA
7383403 TATATTTA
1 TATATTTA
7383411 TATATTTA
1 TATATTTA
7383419 -ATATT
1 TATATT
7383424 ATCTATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 5 0.24
8 16 0.76
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTTA
Found at i:7383917 original size:14 final size:15
Alignment explanation
Indices: 7383855--7383926 Score: 55
Period size: 14 Copynumber: 4.8 Consensus size: 15
7383845 TATTTTTTTA
7383855 AAAAAAAGAAA-AATG
1 AAAAAAAGAAAGAA-G
*
7383870 GAAAAAAG-AA-AAG
1 AAAAAAAGAAAGAAG
7383883 TAAAAGACAAG-AAGCAAG
1 -AAAA-A-AAGAAAG-AAG
7383901 AAAAAAA-AAAGAAG
1 AAAAAAAGAAAGAAG
7383915 AAAAAAAGAAAG
1 AAAAAAAGAAAG
7383927 TTGAGTTACC
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
13 1 0.02
14 17 0.35
15 17 0.35
16 6 0.12
17 4 0.08
18 3 0.06
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (15 bp):
AAAAAAAGAAAGAAG
Found at i:7384237 original size:22 final size:23
Alignment explanation
Indices: 7384196--7384247 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
7384186 TTTTAAAAAA
* *
7384196 GAAAAAAATAAATATATAAATG-
1 GAAAAAAATAAATAAATAAAAGC
7384218 GAAAAAAATAAA-AAAGTAAAAGC
1 GAAAAAAATAAATAAA-TAAAAGC
7384241 GAAAAAA
1 GAAAAAA
7384248 CGAAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.08
22 17 0.65
23 7 0.27
ACGTcount: A:0.73, C:0.02, G:0.12, T:0.13
Consensus pattern (23 bp):
GAAAAAAATAAATAAATAAAAGC
Found at i:7385103 original size:17 final size:17
Alignment explanation
Indices: 7385077--7385112 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7385067 TAATTTTTTT
*
7385077 AAAAAGAAAAAAGTAAA
1 AAAAAAAAAAAAGTAAA
*
7385094 AAAAAAAAAAGAGTAAA
1 AAAAAAAAAAAAGTAAA
7385111 AA
1 AA
7385113 TGAAAAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (17 bp):
AAAAAAAAAAAAGTAAA
Found at i:7385119 original size:17 final size:16
Alignment explanation
Indices: 7385077--7385112 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7385067 TAATTTTTTT
*
7385077 AAAAAGAAAAAAGTAA
1 AAAAAAAAAAAAGTAA
7385093 AAAAAAAAAAAGAGTAA
1 AAAAAAAAAAA-AGTAA
7385110 AAA
1 AAA
7385113 TGAAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (16 bp):
AAAAAAAAAAAAGTAA
Found at i:7385589 original size:10 final size:10
Alignment explanation
Indices: 7385574--7385608 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
7385564 AAATTTTTTT
7385574 AAAAAAAAAG
1 AAAAAAAAAG
**
7385584 GTAAAAAAAG
1 AAAAAAAAAG
7385594 AAAAAAAAAG
1 AAAAAAAAAG
7385604 AAAAA
1 AAAAA
7385609 GGAAATAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:7387625 original size:23 final size:23
Alignment explanation
Indices: 7387597--7387641 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
7387587 TTGTAAATGA
7387597 TTATTTTTATAATAAAATCAAAT
1 TTATTTTTATAATAAAATCAAAT
*
7387620 TTATTTTTATAATAAAGTCAAA
1 TTATTTTTATAATAAAATCAAA
7387642 CTGTAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (23 bp):
TTATTTTTATAATAAAATCAAAT
Found at i:7392039 original size:2 final size:2
Alignment explanation
Indices: 7392032--7392062 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7392022 ATACTTGTGC
7392032 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7392063 CACACACACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7404359 original size:9 final size:9
Alignment explanation
Indices: 7404345--7404372 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
7404335 ATCCAAGTAG
7404345 CTTGTAGGA
1 CTTGTAGGA
7404354 CTTGTAGGA
1 CTTGTAGGA
7404363 CTTGTAGGA
1 CTTGTAGGA
7404372 C
1 C
7404373 CATTAGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.32
Consensus pattern (9 bp):
CTTGTAGGA
Found at i:7412909 original size:12 final size:13
Alignment explanation
Indices: 7412887--7412946 Score: 65
Period size: 12 Copynumber: 4.8 Consensus size: 13
7412877 TATTTTTTTA
*
7412887 TTATTTATTTAAT
1 TTATATATTTAAT
7412900 TT-TATATTT-AT
1 TTATATATTTAAT
*
7412911 TTATATATTT-TT
1 TTATATATTTAAT
7412923 TATATATATTTAAT
1 T-TATATATTTAAT
7412937 TT-TATATTTA
1 TTATATATTTA
7412947 TATTAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
11 4 0.10
12 23 0.56
13 12 0.29
14 2 0.05
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTATATATTTAAT
Found at i:7415900 original size:2 final size:2
Alignment explanation
Indices: 7415893--7415922 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7415883 ATTTAAGAAA
7415893 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7415923 CCATGGAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7418836 original size:21 final size:21
Alignment explanation
Indices: 7418815--7418855 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7418805 TAAAATATTA
7418815 AAATTTTAA-TTTTAATAATT
1 AAATTTTAATTTTTAATAATT
*
7418835 AATTTTTAATTTTTAATAATT
1 AAATTTTAATTTTTAATAATT
7418856 TTAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AAATTTTAATTTTTAATAATT
Found at i:7419717 original size:25 final size:25
Alignment explanation
Indices: 7419689--7419738 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
7419679 GAATAATCAC
7419689 AGTTTGATTAGAATAATATTTGATT
1 AGTTTGATTAGAATAATATTTGATT
* *
7419714 AGTTTGATTCGAATAGTATTTGATT
1 AGTTTGATTAGAATAATATTTGATT
7419739 TGATTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (25 bp):
AGTTTGATTAGAATAATATTTGATT
Found at i:7419813 original size:12 final size:12
Alignment explanation
Indices: 7419772--7419813 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
7419762 ATATTATAAA
7419772 ATTTTAAATTTT
1 ATTTTAAATTTT
*
7419784 GA-TTTAAATTTA
1 -ATTTTAAATTTT
*
7419796 AATTTAAATTTT
1 ATTTTAAATTTT
7419808 ATTTTA
1 ATTTTA
7419814 TTCGAATCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (12 bp):
ATTTTAAATTTT
Found at i:7419813 original size:18 final size:18
Alignment explanation
Indices: 7419771--7419813 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
7419761 AATATTATAA
**
7419771 AATTTTAAATTTTGATTT
1 AATTTTAAATTTAAATTT
*
7419789 AAATTTAAATTTAAATTT
1 AATTTTAAATTTAAATTT
*
7419807 TATTTTA
1 AATTTTA
7419814 TTCGAATCAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
AATTTTAAATTTAAATTT
Found at i:7425546 original size:51 final size:51
Alignment explanation
Indices: 7425484--7425589 Score: 142
Period size: 51 Copynumber: 2.1 Consensus size: 51
7425474 GATAAGAACG
*
7425484 AAATTGCAATAATAATAAAATATAACTTGGAAAAAAAGTTATAAAC-AAAAA
1 AAATTGCAATAACAATAAAATATAACTT-GAAAAAAAGTTATAAACTAAAAA
* * * * *
7425535 AAATTGTAATAACAATAGAATATACCTTGAAAAAAAGTTGTAAACTTAAAA
1 AAATTGCAATAACAATAAAATATAACTTGAAAAAAAGTTATAAACTAAAAA
7425586 AAAT
1 AAAT
7425590 AAAAAATTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
50 16 0.33
51 32 0.67
ACGTcount: A:0.59, C:0.07, G:0.08, T:0.25
Consensus pattern (51 bp):
AAATTGCAATAACAATAAAATATAACTTGAAAAAAAGTTATAAACTAAAAA
Found at i:7427789 original size:2 final size:2
Alignment explanation
Indices: 7427782--7427819 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7427772 TGTGGCTATC
7427782 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7427820 AGCTTTGTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7428102 original size:18 final size:18
Alignment explanation
Indices: 7428079--7428113 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7428069 TTTAAACATT
7428079 TAAAATTATTG-ATTTTTC
1 TAAAATT-TTGTATTTTTC
7428097 TAAAATTTTGTATTTTT
1 TAAAATTTTGTATTTTT
7428114 ATCATTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (18 bp):
TAAAATTTTGTATTTTTC
Found at i:7435370 original size:112 final size:113
Alignment explanation
Indices: 7435242--7435477 Score: 456
Period size: 112 Copynumber: 2.1 Consensus size: 113
7435232 TTATTACCAT
*
7435242 AAAAATCAAATACTAAAATGATAAACAAAAAATGAATTTTTTTAATAATAACAGAATTGTTTATT
1 AAAAATAAAATACTAAAATGATAAACAAAAAATGAATTTTTTTAATAATAACAGAATTGTTTATT
7435307 ATGCAT-AATATCTTTCGTAGTAATCAATATTTAAAATAACAAATATA
66 ATGCATGAATATCTTTCGTAGTAATCAATATTTAAAATAACAAATATA
7435354 AAAAATAAAATACTAAAATGATAAACAAAAAATGAATTTTTTTAATAATAACAGAATTGTTTATT
1 AAAAATAAAATACTAAAATGATAAACAAAAAATGAATTTTTTTAATAATAACAGAATTGTTTATT
7435419 ATGCATGAATATCTTTCGTAGTAATCAATATTTAAAATAACAAATATA
66 ATGCATGAATATCTTTCGTAGTAATCAATATTTAAAATAACAAATATA
7435467 AAAAATAAAAT
1 AAAAATAAAAT
7435478 CTCCTATGAT
Statistics
Matches: 122, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
112 70 0.57
113 52 0.43
ACGTcount: A:0.53, C:0.07, G:0.06, T:0.34
Consensus pattern (113 bp):
AAAAATAAAATACTAAAATGATAAACAAAAAATGAATTTTTTTAATAATAACAGAATTGTTTATT
ATGCATGAATATCTTTCGTAGTAATCAATATTTAAAATAACAAATATA
Found at i:7440022 original size:19 final size:21
Alignment explanation
Indices: 7439998--7440045 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
7439988 TTTATATTAA
7439998 TATTAAAATATA-AAAAT-AT
1 TATTAAAATATATAAAATAAT
*
7440017 TATT-AAATATATATAATAAT
1 TATTAAAATATATAAAATAAT
7440037 TATTAAAAT
1 TATTAAAAT
7440046 TGTAAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 7 0.28
19 8 0.32
20 6 0.24
21 4 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TATTAAAATATATAAAATAAT
Found at i:7440104 original size:13 final size:12
Alignment explanation
Indices: 7440052--7440113 Score: 83
Period size: 11 Copynumber: 5.2 Consensus size: 12
7440042 AAATTGTAAA
7440052 TTATATTAT-TT
1 TTATATTATATT
*
7440063 TTATATAATATT
1 TTATATTATATT
*
7440075 TTATATAATA-T
1 TTATATTATATT
7440086 TTATATTATATT
1 TTATATTATATT
7440098 ATTATATTATATT
1 -TTATATTATATT
7440111 TTA
1 TTA
7440114 ATTTATGGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
11 18 0.39
12 16 0.35
13 12 0.26
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATATTATATT
Found at i:7445420 original size:116 final size:116
Alignment explanation
Indices: 7445216--7445449 Score: 346
Period size: 116 Copynumber: 2.0 Consensus size: 116
7445206 CTCATGGCCA
* * * *
7445216 ATTATATGTAGTTGTTTCCAGAGAAACATCATCGGGGAGATTAAAATTTTTAATTGAAAACAATG
1 ATTATATGTAGTTGCTTCAAGAGAAACATCATAGGAGAGATTAAAATTTTTAATTGAAAACAATG
* *
7445281 ATCATGATATTCATTCATGCACAAATAATGTTGTATACATTGAGGTGTTTG
66 ATCATAATATTCATTCATGCACAAATAATGTTGTATACAATGAGGTGTTTG
*
7445332 ATTATATGTAGTTGCTTCAAGAGTAAA-ATCATTAGGAG-GATTAAAATTTTTAATTGAAAATAA
1 ATTATATGTAGTTGCTTCAAGAG-AAACATCA-TAGGAGAGATTAAAATTTTTAATTGAAAACAA
** *
7445395 TGATCATAATATTCATTTGTGCACAAATAATGTTGTATATAATGAGGTGTTTG
64 TGATCATAATATTCATTCATGCACAAATAATGTTGTATACAATGAGGTGTTTG
7445448 AT
1 AT
7445450 GATGTTTTCC
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
116 99 0.93
117 7 0.07
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.38
Consensus pattern (116 bp):
ATTATATGTAGTTGCTTCAAGAGAAACATCATAGGAGAGATTAAAATTTTTAATTGAAAACAATG
ATCATAATATTCATTCATGCACAAATAATGTTGTATACAATGAGGTGTTTG
Found at i:7446962 original size:15 final size:16
Alignment explanation
Indices: 7446934--7446963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7446924 AGGATTTTAG
7446934 TTAAATATACTTTAAT
1 TTAAATATACTTTAAT
7446950 TTAAATATA-TTTAA
1 TTAAATATACTTTAA
7446964 AATTATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAATATACTTTAAT
Found at i:7453807 original size:186 final size:182
Alignment explanation
Indices: 7453588--7454906 Score: 1326
Period size: 186 Copynumber: 7.1 Consensus size: 182
7453578 AAATTTTTTT
** *
7453588 AAAGAAAATTATTGAAGGTGTTTGTTCTGAAAAAATGCTTTCAATAATTATGTAGGTAAATTAGA
1 AAAGAAAATTATTGAAGGCATTTGTTCTGAAAAAATGCTTT-AATAATTATGTACGTAAATTAGA
* * * *
7453653 AGGAATTAGTGAAGGCATTATTCTAAAATAAATCCCTTTACTAACCATCTTAAGATTTGAGTTGT
65 AGGAATTAGTGAAGGCATTGTTCTAGAATAAA-CCCTTCACTAACCATCTTAA-ATTTGAGCTGT
* * *
7453718 AGAATATTGAATGCATTTTTCACTGAAAGACCCCTTTAATAATCTCAAAAATTATA
128 -GAATATTGAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCTCAAAAATTATA
* * * * *
7453774 AAAGAAAATTATTGAAAGCATTTGTTTTGAAAAAATACATTTAATAATTATATACGTAAATTAAA
1 AAAGAAAATTATTGAAGGCATTTGTTCTGAAAAAATGC-TTTAATAATTATGTACGTAAATTAGA
** * *
7453839 AGGAATTAGTGAAGGTGTTGTTCTATAATAAACGCCTTCATTAACCATCTTAAAATTTGAGCTGT
65 AGGAATTAGTGAAGGCATTGTTCTAGAATAAAC-CCTTCACTAACCATCTT-AAATTTGAGCTGT
*** * * *
7453904 GGAATATTGAAGATGTTTTTAACTGGATGACGCCTTTAATAATCTTAAAAATTATA
128 -GAATATTGAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCTCAAAAATTATA
* * * * * *
7453960 AGAA-AAAATTATTGAAGGCGTTTGCTCTAAAAAAATGCCTTCAATAACTATGTACATAAATTAG
1 A-AAGAAAATTATTGAAGGCATTTGTTCTGAAAAAATG-CTTTAATAATTATGTACGTAAATTAG
* **
7454024 AAGGAATTAGTGAAGGCATTGTTCTAGAATAAACGCCTTCATTAACTGTCTTAAAGTTTGAGCTG
64 AAGGAATTAGTGAAGGCATTGTTCTAGAATAAAC-CCTTCACTAACCATCTTAAA-TTTGAGCTG
* ** * *
7454089 TGGAATATTGAAAGTGTTTTTCACTAGAAGACGCCTTTAATAATCTTAAAAATTATA
127 T-GAATATTGAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCTCAAAAATTATA
* *
7454146 AAGAGAAAACTATTGAAGGCATTTGTTCT-AAAAAATGCTTTCAATAATTATGTACGTAAATTAT
1 AA-AGAAAATTATTGAAGGCATTTGTTCTGAAAAAATGCTTT-AATAATTATGTACGTAAATTAG
* * * ** * * *
7454210 AATGAATTAATAAAGGTGTTGTTCTAGAATAAACACCTTTACTAATCATTTTAAAGTTTGAGCTG
64 AAGGAATTAGTGAAGGCATTGTTCTAGAATAAAC-CCTTCACTAACCATCTTAAA-TTTGAGCTG
* * * *
7454275 TGAAATATTGAAGGCGTTTTTCACTAGAAGATGCCTTTGATAATC-CTAAAAATTATA
127 TG-AATATTGAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCTC-AAAAATTATA
* * * *
7454332 AGAGAAAATTATTGAAGGCATTTATTCTGAAAAAATACCTATAATAATTA--T--GTAAATTAGA
1 AAAGAAAATTATTGAAGGCATTTGTTCTGAAAAAAT-GCTTTAATAATTATGTACGTAAATTAG-
* * **
7454393 AAGGAATTAGTGAAGGCGTTGTTCTAGAATAAATGCCTTCACTAACCATCTTAAATTTTGATATG
64 AAGGAATTAGTGAAGGCATTGTTCTAGAATAAA-CCCTTCACTAACCATCTTAAA-TTTGAGCTG
* * * *
7454458 TGAAATATTGCAGGCATTTTTCATTGGAAGACGTCTTTAATAATCCCAAAAATTATA
127 TG-AATATTGAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCTCAAAAATTATA
* * * * * *
7454515 AGAA-AAAATTATTGAAGACGTTTGTTTTGAAAAAATACCTATAATAATTATGTACATAAATTAG
1 A-AAGAAAATTATTGAAGGCATTTGTTCTGAAAAAAT-GCTTTAATAATTATGTACGTAAATTAG
* * * * *
7454579 AAGGAAGTAGTGAAGGCATTGTTCTAGAATAAATGCCTTCACTAACCGTCTTAAAATTTAAGTTG
64 AAGGAATTAGTGAAGGCATTGTTCTAGAATAAA-CCCTTCACTAACCATCTT-AAATTTGAGCTG
* ** * * *
7454644 TGGAATATTGAAAGCATTTTTCTTTGGAAGATGTCTTTAATAATCTTAAAAATTATA
127 T-GAATATTGAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCTCAAAAATTATA
* **
7454701 AAA-AAAATTTATTAAAGGCATTTGTTCT-AAAAAAGTGCCTAAAATAATTATGTACGTAAATTA
1 AAAGAAAA-TTATTGAAGGCATTTGTTCTGAAAAAA-TG-CTTTAATAATTATGTACGTAAATTA
* ** * * * * *
7454764 GAAGGAATTAGTAAAGTTATTTTTCTAGAATAAACGCTTTAACTAAACATCTTAAAATTTGAGCA
63 GAAGGAATTAGTGAAGGCATTGTTCTAGAATAAAC-CCTTCACTAACCATCTT-AAATTTGAGCT
* * * * * * * *
7454829 GTGAAAAATTAAAGGTATTTTTTACTGGAAGAAGCCTTTAATAATCCCAAACAATTTTT
126 GTG-AATATTGAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCTCAAA-AATTATA
7454888 AAAGAAAAATTATTGAAGG
1 AAAG-AAAATTATTGAAGG
7454907 TGATTTTAGT
Statistics
Matches: 956, Mismatches: 146, Indels: 60
0.82 0.13 0.05
Matches are distributed among these distances:
182 8 0.01
183 144 0.15
184 3 0.00
185 47 0.05
186 689 0.72
187 52 0.05
188 9 0.01
189 4 0.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.34
Consensus pattern (182 bp):
AAAGAAAATTATTGAAGGCATTTGTTCTGAAAAAATGCTTTAATAATTATGTACGTAAATTAGAA
GGAATTAGTGAAGGCATTGTTCTAGAATAAACCCTTCACTAACCATCTTAAATTTGAGCTGTGAA
TATTGAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCTCAAAAATTATA
Found at i:7454284 original size:372 final size:371
Alignment explanation
Indices: 7453592--7454906 Score: 1501
Period size: 372 Copynumber: 3.5 Consensus size: 371
7453582 TTTTTTAAAG
** * * *
7453592 AAAATTATTGAAGGTGTTTGTTCTGAAAAAATGCTTTCAATAATTATGTAGGTAAATTAGAAGGA
1 AAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACGTAAATTAGAAGGA
* * * *
7453657 ATTAGTGAAGGCATTATTCTAAAATAAATC-CCTTTACTAACCATCTT-AAGATTTGAGTTGT-A
66 ATTAGTGAAGGCATTGTTCTAGAATAAA-CGCCTTCACTAACCATCTTAAAG-TTTGAGCTGTGA
* * * *
7453719 GAATATTGAATGCATTTTTCACTGAAAGACCCCTTTAATAATCTCAAAAATTATAAA-AGAAAAT
129 -AATATTGAAAGCATTTTTCACTGGAAGACGCCTTTAATAATCCCAAAAATTATAAAGAGAAAAT
* *
7453783 TATTGAAAGCATTTGTTTTGAAAAAATACATTTAATAATTATATACGTAAATTAAAAGGAATTAG
193 TATTGAAGGCATTTGTTTTGAAAAAATAC-TTTAATAATTATGTACGTAAATTAAAAGGAATTAG
* *
7453848 TGAAGGTGTTGTTCTATAATAAACGCCTTCATTAACCATCTTAAAATTTGAGCTGTGGAATATTG
257 TGAAGGTGTTGTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGCTGTGGAATATTG
* *
7453913 AAGATGTTTTTAACTGGATGACGCCTTTAATAATCTTAAAAATTATAAGAA
322 AAGATGTTTTT-ACTGGAAGATGCCTTTAATAATCTTAAAAATTATAAGAA
* * * *
7453964 AAAATTATTGAAGGCGTTTGCTCTAAAAAAATGCCTTCAATAACTATGTACATAAATTAGAAGGA
1 AAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACGTAAATTAGAAGGA
* ** *
7454029 ATTAGTGAAGGCATTGTTCTAGAATAAACGCCTTCATTAACTGTCTTAAAGTTTGAGCTGTGGAA
66 ATTAGTGAAGGCATTGTTCTAGAATAAACGCCTTCACTAACCATCTTAAAGTTTGAGCTGTGAAA
** * ** *
7454094 TATTGAAAGTGTTTTTCACTAGAAGACGCCTTTAATAATCTTAAAAATTATAAAGAGAAAACTAT
131 TATTGAAAGCATTTTTCACTGGAAGACGCCTTTAATAATCCCAAAAATTATAAAGAGAAAATTAT
* * * * * *
7454159 TGAAGGCATTTGTTCT-AAAAAATGCTTTCAATAATTATGTACGTAAATTATAATGAATTAATAA
196 TGAAGGCATTTGTTTTGAAAAAATACTTT-AATAATTATGTACGTAAATTAAAAGGAATTAGTGA
* * * * * *
7454223 AGGTGTTGTTCTAGAATAAACACCTTTACTAATCATTTTAAAGTTTGAGCTGTGAAATATTGAAG
260 AGGTGTTGTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGCTGTGGAATATTGAAG
** * * * *
7454288 GCGTTTTTCACTAGAAGATGCCTTTGATAATCCTAAAAATTATAAGAG
325 ATGTTTTT-ACTGGAAGATGCCTTTAATAATCTTAAAAATTATAAGAA
* * *
7454336 AAAATTATTGAAGGCATTTATTCTGAAAAAATACCTAT-AATAATTA--T--GTAAATTAGAAAG
1 AAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCT-TCAATAATTATGTACGTAAATTAG-AAG
* * * **
7454396 GAATTAGTGAAGGCGTTGTTCTAGAATAAATGCCTTCACTAACCATCTTAAATTTTGATATGTGA
64 GAATTAGTGAAGGCATTGTTCTAGAATAAACGCCTTCACTAACCATCTTAAAGTTTGAGCTGTGA
* * * * *
7454461 AATATTGCAGGCATTTTTCATTGGAAGACGTCTTTAATAATCCCAAAAATTAT-AAGAAAAAATT
129 AATATTGAAAGCATTTTTCACTGGAAGACGCCTTTAATAATCCCAAAAATTATAAAGAGAAAATT
* * * * * *
7454525 ATTGAAGACGTTTGTTTTGAAAAAATACCTATAATAATTATGTACATAAATTAGAAGGAAGTAGT
194 ATTGAAGGCATTTGTTTTGAAAAAATA-CTTTAATAATTATGTACGTAAATTAAAAGGAATTAGT
** * * * *
7454590 GAAGGCATTGTTCTAGAATAAATGCCTTCACTAACCGTCTTAAAATTTAAGTTGTGGAATATTGA
258 GAAGGTGTTGTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGCTGTGGAATATTG-
* *
7454655 AAGCAT-TTTTCT-TTGGAAGATGTCTTTAATAATCTTAAAAATTATAA-AA
322 AAG-ATGTTTT-TACTGGAAGATGCCTTTAATAATCTTAAAAATTATAAGAA
* * **
7454704 AAAATTTATTAAAGGCATTTGTTCTAAAAAAGTGCCTAAAATAATTATGTACGTAAATTAGAAGG
1 AAAA-TTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACGTAAATTAGAAGG
* ** * * * * * *
7454769 AATTAGTAAAGTTATTTTTCTAGAATAAACGCTTTAACTAAACATCTTAAAATTTGAGCAGTGAA
65 AATTAGTGAAGGCATTGTTCTAGAATAAACGCCTTCACTAACCATCTTAAAGTTTGAGCTGTGAA
* * * * *
7454834 AAATT-AAAGGTATTTTTTACTGGAAGAAGCCTTTAATAATCCCAAACAATTTTTAAAGA-AAAA
130 ATATTGAAA-GCATTTTTCACTGGAAGACGCCTTTAATAATCCCAAA-AA-TTATAAAGAGAAAA
7454897 TTATTGAAGG
192 TTATTGAAGG
7454907 TGATTTTAGT
Statistics
Matches: 786, Mismatches: 135, Indels: 42
0.82 0.14 0.04
Matches are distributed among these distances:
368 37 0.05
369 254 0.32
370 11 0.01
371 7 0.01
372 419 0.53
373 38 0.05
374 16 0.02
375 4 0.01
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (371 bp):
AAAATTATTGAAGGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACGTAAATTAGAAGGA
ATTAGTGAAGGCATTGTTCTAGAATAAACGCCTTCACTAACCATCTTAAAGTTTGAGCTGTGAAA
TATTGAAAGCATTTTTCACTGGAAGACGCCTTTAATAATCCCAAAAATTATAAAGAGAAAATTAT
TGAAGGCATTTGTTTTGAAAAAATACTTTAATAATTATGTACGTAAATTAAAAGGAATTAGTGAA
GGTGTTGTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGCTGTGGAATATTGAAGA
TGTTTTTACTGGAAGATGCCTTTAATAATCTTAAAAATTATAAGAA
Found at i:7465201 original size:11 final size:11
Alignment explanation
Indices: 7465187--7465249 Score: 56
Period size: 11 Copynumber: 5.6 Consensus size: 11
7465177 AATATTCTAA
7465187 ATTGATTTGAT
1 ATTGATTTGAT
*
7465198 ATTGATTTAGAG
1 ATTGATTT-GAT
* *
7465210 AAT-ATTAGAT
1 ATTGATTTGAT
*
7465220 ATTGACTTGAT
1 ATTGATTTGAT
*
7465231 ATTGAGTTAGAT
1 ATTGA-TTTGAT
7465243 ATTGATT
1 ATTGATT
7465250 GGGTGATTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
10 4 0.10
11 23 0.57
12 13 0.32
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (11 bp):
ATTGATTTGAT
Found at i:7473260 original size:18 final size:17
Alignment explanation
Indices: 7473234--7473268 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7473224 ATATCAAGAT
*
7473234 TTTAATTAAATTTTGAA
1 TTTAATTAAATCTTGAA
7473251 TTTAATTTAAATCTTGAA
1 TTTAA-TTAAATCTTGAA
7473269 CCAAAATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (17 bp):
TTTAATTAAATCTTGAA
Found at i:7473480 original size:21 final size:22
Alignment explanation
Indices: 7473443--7473486 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
7473433 AATTTCATGT
7473443 TAATTAGGCTCCTAATATCATA
1 TAATTAGGCTCCTAATATCATA
7473465 TAATTAGGCT-CTAATATCATA
1 TAATTAGGCTCCTAATATCATA
7473486 T
1 T
7473487 GTAAGCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (22 bp):
TAATTAGGCTCCTAATATCATA
Found at i:7478087 original size:16 final size:15
Alignment explanation
Indices: 7478061--7478090 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7478051 ATTTCCAATT
7478061 TAAAAAAAAATAAAA
1 TAAAAAAAAATAAAA
7478076 TAAAATAAAAATAAA
1 TAAAA-AAAAATAAA
7478091 CCTCCCCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAAAAAAATAAAA
Found at i:7480710 original size:14 final size:14
Alignment explanation
Indices: 7480691--7480718 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7480681 TTAGGCTAGT
7480691 GGATTGTTAGTGGA
1 GGATTGTTAGTGGA
7480705 GGATTGTTAGTGGA
1 GGATTGTTAGTGGA
7480719 CTAAGCTGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (14 bp):
GGATTGTTAGTGGA
Found at i:7484562 original size:19 final size:20
Alignment explanation
Indices: 7484527--7484567 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
7484517 TGATGATACG
7484527 ATAAAACTATAATATAA-AA
1 ATAAAACTATAATATAACAA
*
7484546 ATAAAA-TATGATAATAACAA
1 ATAAAACTATAAT-ATAACAA
7484566 AT
1 AT
7484568 TTAAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 5 0.26
19 10 0.53
20 4 0.21
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAAAACTATAATATAACAA
Found at i:7486215 original size:13 final size:13
Alignment explanation
Indices: 7486197--7486227 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7486187 TTTTTTTTTT
*
7486197 TATTTGTTTAAAA
1 TATTTGTGTAAAA
7486210 TATTTGTGTAAAA
1 TATTTGTGTAAAA
7486223 TATTT
1 TATTT
7486228 ATTAGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (13 bp):
TATTTGTGTAAAA
Found at i:7496396 original size:12 final size:12
Alignment explanation
Indices: 7496379--7496409 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7496369 ACCAAAAATA
7496379 CCTTCAATAATC
1 CCTTCAATAATC
7496391 CCTTCAATAATC
1 CCTTCAATAATC
*
7496403 CCCTCAA
1 CCTTCAA
7496410 CAAATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.29
Consensus pattern (12 bp):
CCTTCAATAATC
Found at i:7496505 original size:63 final size:64
Alignment explanation
Indices: 7496391--7496689 Score: 184
Period size: 63 Copynumber: 4.7 Consensus size: 64
7496381 TTCAATAATC
* * * * *
7496391 CCTTCAATAATCCCCTCAACAAATTTTTTTTGTATGGATTATTAAAAGCATTTTTGGACAAAAAC
1 CCTTCAATAAT-CCCTCTACAAA-ATTTTTTGTATAGATTATTGAAGGCATTTTTGGACAAAAAC
7496456 G
64 G
* *
7496457 CCTTCAATAATCCCT-TACAAAATTTTTTGTATAAATTATTGAAGGCATTTTT-GACAAAAAATG
1 CCTTCAATAATCCCTCTACAAAATTTTTTGTATAGATTATTGAAGGCATTTTTGGAC-AAAAA-C
7496520 G
64 G
** * * * * * ** * *
7496521 TGTTTAATATTCTCTCTCCAAAATTTTTT-TA-ATGTATTATTGAAGGTATTTTTGCTCAACAAT
1 CCTTCAATAATCCCTCTACAAAATTTTTTGTATA-G-ATTATTGAAGGCATTTTTGGACAAAAAC
*
7496584 A
64 G
* * * *
7496585 CTTTCAATAATCCCT-T-CTAAAATTTTTTGTATAGATTATGGAAAGTATTTTT--ATCAAAAA-
1 CCTTCAATAATCCCTCTAC-AAAATTTTTTGTATAGATTATTGAAGGCATTTTTGGA-CAAAAAC
*
7496645 A
64 G
* * * * ** *
7496646 CCTTTAATATTCTCTCTCCAAAATTTTTTAAATGGATTATTGAA
1 CCTTCAATAATCCCTCTACAAAATTTTTTGTATAGATTATTGAA
7496690 AATATTTTTA
Statistics
Matches: 184, Mismatches: 37, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
61 12 0.07
62 31 0.17
63 60 0.33
64 31 0.17
65 38 0.21
66 12 0.07
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.42
Consensus pattern (64 bp):
CCTTCAATAATCCCTCTACAAAATTTTTTGTATAGATTATTGAAGGCATTTTTGGACAAAAACG
Found at i:7496572 original size:128 final size:125
Alignment explanation
Indices: 7496424--7496723 Score: 336
Period size: 128 Copynumber: 2.4 Consensus size: 125
7496414 TTTTTTTTGT
* *
7496424 ATGGATTATT-AAAAGCATTTTTGGACAAAAACGCCTTCAATAATCCCTTAC-AAAATTTTTTGT
1 ATGGATTATTGAAAA-TATTTTTGGACAAAAACACCTTCAATAATCCCTT-CTAAAATTTTTTGT
* * ** *
7496487 ATAAATTATTGAAGGCATTTTTGA-CAAAAAATGGTGTTTAATATTCTCTCTCCAAAATTTTTTT
64 ATAAATTATGGAAAGCATTTTT-ATCAAAAAA---CCTTTAATATTCTCTCTCCAAAATTTTTTA
7496551 A
125 A
* ** ** * * *
7496552 ATGTATTATTGAAGGTATTTTTGCTCAACAATACTTTCAATAATCCCTTCTAAAATTTTTTGTAT
1 ATGGATTATTGAAAATATTTTTGGACAAAAACACCTTCAATAATCCCTTCTAAAATTTTTTGTAT
* *
7496617 AGATTATGGAAAGTATTTTTATCAAAAAACCTTTAATATTCTCTCTCCAAAATTTTTTAA
66 AAATTATGGAAAGCATTTTTATCAAAAAACCTTTAATATTCTCTCTCCAAAATTTTTTAA
* * * *
7496677 ATGGATTATTGAAAATATTTTTAGCCAAAAACATCTTTAATAATCCC
1 ATGGATTATTGAAAATATTTTTGGACAAAAACACCTTCAATAATCCC
7496724 ATTTAATTTT
Statistics
Matches: 141, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
125 64 0.45
127 2 0.01
128 73 0.52
129 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (125 bp):
ATGGATTATTGAAAATATTTTTGGACAAAAACACCTTCAATAATCCCTTCTAAAATTTTTTGTAT
AAATTATGGAAAGCATTTTTATCAAAAAACCTTTAATATTCTCTCTCCAAAATTTTTTAA
Found at i:7496696 original size:62 final size:61
Alignment explanation
Indices: 7496523--7496718 Score: 196
Period size: 62 Copynumber: 3.1 Consensus size: 61
7496513 AAAAATGGTG
* * * * *
7496523 TTTAATATTCTCTCTCCAAAATTTTTTTAATGTATTATTGAAGGTATTTTTGCTCAACAATAC
1 TTTAATATTCTCTCTCCAAAATTTTTTAAATGGATTATTGAAAGTATTTTT-ATCAA-AAAAC
* * * ** * *
7496586 TTTCAATAATCCCT-TCTAAAATTTTTTGTATAGATTATGGAAAGTATTTTTATCAAAAAACC
1 TTT-AATATTCTCTCTCCAAAATTTTTTAAATGGATTATTGAAAGTATTTTTATCAAAAAA-C
* *
7496648 TTTAATATTCTCTCTCCAAAATTTTTTAAATGGATTATTGAAAATATTTTTAGCCAAAAACATC
1 TTTAATATTCTCTCTCCAAAATTTTTTAAATGGATTATTGAAAGTATTTTTA-TCAAAAA-A-C
7496712 TTTAATA
1 TTTAATA
7496719 ATCCCATTTA
Statistics
Matches: 107, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
61 11 0.10
62 40 0.37
63 39 0.36
64 17 0.16
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.44
Consensus pattern (61 bp):
TTTAATATTCTCTCTCCAAAATTTTTTAAATGGATTATTGAAAGTATTTTTATCAAAAAAC
Found at i:7498472 original size:24 final size:25
Alignment explanation
Indices: 7498445--7498492 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
7498435 TTAAATTCCC
7498445 ACATATTTTTT-TTT-TTTATTTTTG
1 ACAT-TTTTTTCTTTCTTTATTTTTG
7498469 ACATTTTTTTCTTTCCTTTATTTT
1 ACATTTTTTTCTTT-CTTTATTTT
7498493 CTCTTTTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.29
24 7 0.33
26 8 0.38
ACGTcount: A:0.15, C:0.10, G:0.02, T:0.73
Consensus pattern (25 bp):
ACATTTTTTTCTTTCTTTATTTTTG
Found at i:7499006 original size:34 final size:33
Alignment explanation
Indices: 7498967--7499158 Score: 108
Period size: 34 Copynumber: 5.8 Consensus size: 33
7498957 AAGGTGATAG
* *
7498967 GGATTGAACTGTAAGTTAGAAAAATAAATGATTT
1 GGATTGAACTGCAAGTTA-AAAAATAAATGAATT
* * * *
7499001 GGATTGAACTACACGTCAAACAAATAAATGACTT
1 GGATTGAACTGCAAGTTAAA-AAATAAATGAATT
* * *
7499035 GGATTGAA-T-CAAGGTAAAAAATAAGT-AATC
1 GGATTGAACTGCAAGTTAAAAAATAAATGAATT
* * * **
7499065 GAAACTGAACTGTAAGTTAGAAAAATAAATGACCT
1 G-GATTGAACTGCAAGTTA-AAAAATAAATGAATT
* * * * *
7499100 AGATTGAA-T-CAAAG-TCAAAAATTAGTGATTT
1 GGATTGAACTGC-AAGTTAAAAAATAAATGAATT
*
7499131 GGATTGAATTGCAAGTCTAAAAAATAAA
1 GGATTGAACTGCAAGT-TAAAAAATAAA
7499159 AGACCTAGAT
Statistics
Matches: 115, Mismatches: 32, Indels: 22
0.68 0.19 0.13
Matches are distributed among these distances:
30 3 0.03
31 30 0.26
32 12 0.10
33 13 0.11
34 56 0.49
35 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.18, T:0.27
Consensus pattern (33 bp):
GGATTGAACTGCAAGTTAAAAAATAAATGAATT
Found at i:7499152 original size:99 final size:99
Alignment explanation
Indices: 7498971--7499157 Score: 238
Period size: 99 Copynumber: 1.9 Consensus size: 99
7498961 TGATAGGGAT
** * *
7498971 TGAACTGTAAGTTAGAAAAATAAATGATTTGGATTGAACTACACGTCAAACAAATAAATGACTTG
1 TGAACTGTAAGTTAGAAAAATAAATGACCTAGATTGAACTACAAGTCAAACAAATAAATGACTTG
*
7499036 GATTGAATCAAGGTAAAAAATAAGTAATCGAAAC
66 GATTGAATCAAGCTAAAAAATAAGTAATCGAAAC
* * *
7499070 TGAACTGTAAGTTAGAAAAATAAATGACCTAGATTGAA-T-CAAAGTC-AA-AAATTAGTGATTT
1 TGAACTGTAAGTTAGAAAAATAAATGACCTAGATTGAACTAC-AAGTCAAACAAATAAATGACTT
7499131 GGATTGAATTGCAAGTCTAAAAAATAA
65 GGATTGAA-T-CAAG-CTAAAAAATAA
7499158 AAGACCTAGA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
96 18 0.24
97 4 0.05
98 9 0.12
99 45 0.59
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.27
Consensus pattern (99 bp):
TGAACTGTAAGTTAGAAAAATAAATGACCTAGATTGAACTACAAGTCAAACAAATAAATGACTTG
GATTGAATCAAGCTAAAAAATAAGTAATCGAAAC
Found at i:7499154 original size:65 final size:65
Alignment explanation
Indices: 7498986--7499171 Score: 189
Period size: 65 Copynumber: 2.9 Consensus size: 65
7498976 TGTAAGTTAG
* * * * * *
7498986 AAAAATAAATGATTTGGATTGAACTACACGTC-AAACAAATAAATGACTTGGATTGAATCAAGGT
1 AAAAATAAGTGATTTGGATTGAACTGCAAGTCTAAA-AAATAAATGACCTAGATTGAATCAAAGT
7499050 A
65 A
* * * * *
7499051 AAAAATAAGT-AATCGAAACTGAACTGTAAGT-TAGAAAAATAAATGACCTAGATTGAATCAAAG
1 AAAAATAAGTGATTTG-GATTGAACTGCAAGTCTA-AAAAATAAATGACCTAGATTGAATCAAAG
*
7499114 TC
64 TA
* * *
7499116 AAAAATTAGTGATTTGGATTGAATTGCAAGTCTAAAAAATAAAAGACCTAGATTGA
1 AAAAATAAGTGATTTGGATTGAACTGCAAGTCTAAAAAATAAATGACCTAGATTGA
7499172 GAGTGACTAG
Statistics
Matches: 96, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
64 3 0.03
65 86 0.90
66 7 0.07
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.26
Consensus pattern (65 bp):
AAAAATAAGTGATTTGGATTGAACTGCAAGTCTAAAAAATAAATGACCTAGATTGAATCAAAGTA
Found at i:7499292 original size:65 final size:66
Alignment explanation
Indices: 7499198--7499477 Score: 230
Period size: 65 Copynumber: 4.3 Consensus size: 66
7499188 ACCGTAAGTT
* * * *
7499198 AAAAATAAATGACATGGACTGAATTGAGGTTGAAAATGAGTGATCGAAATTGAA-CATCAAGTTA
1 AAAAATAAATGACCTGGACTAAATCGAGGTTGAAAATGAGTGATCGAAACTGAACCATCAAGTTA
7499262 A
66 A
** * * * * * ** *
7499263 AAAAATAAATGACCTAAATTGAATCGAGGTTGAAAATAAATGATTGGGACTGAACCA-CAAGTCA
1 AAAAATAAATGACCTGGACTAAATCGAGGTTGAAAATGAGTGATCGAAACTGAACCATCAAGTTA
7499327 A
66 A
* * * * * * *
7499328 AAAAATAAATGACCTGTACTAAACCAAGGTCGAAAATGAGTTATCGAGACTGAACCGT-AAGTTA
1 AAAAATAAATGACCTGGACTAAATCGAGGTTGAAAATGAGTGATCGAAACTGAACCATCAAGTTA
*
7499392 G
66 A
* * ** * * *
7499393 AAAAACAAATGACCTGGATTAAATCGAGGTAAAAAATGAGTGA-CTAAAATTGAA-CTTCAAGTT
1 AAAAATAAATGACCTGGACTAAATCGAGGTTGAAAATGAGTGATC-GAAACTGAACCATCAAGTT
7499456 AGA
65 A-A
*
7499459 AAAAA-AAATGACTTGGACT
1 AAAAATAAATGACCTGGACT
7499478 GAGTTGAAGT
Statistics
Matches: 168, Mismatches: 42, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
64 3 0.02
65 158 0.94
66 7 0.04
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (66 bp):
AAAAATAAATGACCTGGACTAAATCGAGGTTGAAAATGAGTGATCGAAACTGAACCATCAAGTTA
A
Found at i:7499333 original size:178 final size:178
Alignment explanation
Indices: 7499022--7499342 Score: 401
Period size: 178 Copynumber: 1.8 Consensus size: 178
7499012 CACGTCAAAC
* * * *
7499022 AAATAAATGACTTGGATTGAATCAAGGTAAAAAATAAGTAATCGAAACTGAACTGTAAGTTAGAA
1 AAATAAATGACATGGACTGAATCAAGGTAAAAAATAAGTAATCGAAACTGAACTGCAAGTTAAAA
* * * * * *** *
7499087 AAATAAATGACCTAGATTGAATCAAAGTCAAAAATTAGTGATTTGGATTGAATTGCAAGTCTAAA
66 AAATAAATGACCTAAATTGAATCAAAGTCAAAAATAAATGATTGGGACTGAACCACAAGTCAAAA
7499152 AAATAAAAGACCTAGATTGAGAGTGACTAGGATTGAACCGTAAGTTAA
131 AAATAAAAGACCTAGATTGAGAGTGACTAGGATTGAACCGTAAGTTAA
** ** * * *
7499200 AAATAAATGACATGGACTGAATTGAGGTTGAAAATGAGTGATCGAAATTGAACAT-CAAGTTAAA
1 AAATAAATGACATGGACTGAATCAAGGTAAAAAATAAGTAATCGAAACTGAAC-TGCAAGTTAAA
* * **
7499264 AAAATAAATGACCTAAATTGAATCGAGGTTGAAAATAAATGATTGGGACTGAACCACAAGTCAAA
65 AAAATAAATGACCTAAATTGAATCAAAGTCAAAAATAAATGATTGGGACTGAACCACAAGTCAAA
*
7499329 AAAATAAATGACCT
130 AAAATAAAAGACCT
7499343 GTACTAAACC
Statistics
Matches: 117, Mismatches: 25, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
178 116 0.99
179 1 0.01
ACGTcount: A:0.47, C:0.10, G:0.19, T:0.25
Consensus pattern (178 bp):
AAATAAATGACATGGACTGAATCAAGGTAAAAAATAAGTAATCGAAACTGAACTGCAAGTTAAAA
AAATAAATGACCTAAATTGAATCAAAGTCAAAAATAAATGATTGGGACTGAACCACAAGTCAAAA
AAATAAAAGACCTAGATTGAGAGTGACTAGGATTGAACCGTAAGTTAA
Found at i:7506942 original size:60 final size:60
Alignment explanation
Indices: 7506825--7506943 Score: 156
Period size: 60 Copynumber: 2.0 Consensus size: 60
7506815 CTCCTTTTGA
**
7506825 ATTTCTAAATTTTTCACTATTTGGGCCAATTTAGAAATTTTCTTTATTTATTTATTTTTT
1 ATTTCTAAATTTTTCACTATTTGGGCCAATTTAGAAATTTTCTTTATTTATGAATTTTTT
7506885 ATTTCTAAATTTTTCA-TAATTTTGGG-CAATTTAGAAATATTTTCTTT-TTTA-GAATTTTT
1 ATTTCTAAATTTTTCACT-A-TTTGGGCCAATTTAG-AA-ATTTTCTTTATTTATGAATTTTT
7506944 ACATTTTCTA
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
59 1 0.02
60 31 0.58
61 12 0.23
62 9 0.17
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.57
Consensus pattern (60 bp):
ATTTCTAAATTTTTCACTATTTGGGCCAATTTAGAAATTTTCTTTATTTATGAATTTTTT
Found at i:7507327 original size:26 final size:26
Alignment explanation
Indices: 7507270--7507332 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
7507260 TTCTCACCTA
* *
7507270 ATAATTTTATAAAAATTTTATCATTT
1 ATAATTTTATAAAAATTCTATCATTG
* *
7507296 AAAATTTT-TTAAAATTCTATCATTGG
1 ATAATTTTATAAAAATTCTATCATT-G
7507322 ATAATTATTAT
1 ATAATT-TTAT
7507333 TTATTCTCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
25 14 0.48
26 12 0.41
27 2 0.07
28 1 0.03
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (26 bp):
ATAATTTTATAAAAATTCTATCATTG
Done.