Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 37 of 129
Found at i:7662509 original size:20 final size:21
Alignment explanation
Indices: 7662460--7662512 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
7662450 TATATTTAAT
7662460 AAATAAATA-AAAAACAATAA
1 AAATAAATATAAAAACAATAA
7662480 AAAT--ATATAAAAACAA-AA
1 AAATAAATATAAAAACAATAA
*
7662498 AAATAAAAATAAAAA
1 AAATAAATATAAAAA
7662513 GTAGAGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 9 0.31
19 8 0.28
20 12 0.41
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (21 bp):
AAATAAATATAAAAACAATAA
Found at i:7665073 original size:20 final size:20
Alignment explanation
Indices: 7665029--7665073 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 20
7665019 AATATGTACT
7665029 TATTTATGTAATATAAATCA
1 TATTTATGTAATATAAATCA
7665049 T-TTTATAGTAA-A-AAATACA
1 TATTTAT-GTAATATAAAT-CA
7665068 TATTTA
1 TATTTA
7665074 CGTGAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (20 bp):
TATTTATGTAATATAAATCA
Found at i:7666564 original size:22 final size:22
Alignment explanation
Indices: 7666539--7666701 Score: 100
Period size: 22 Copynumber: 7.5 Consensus size: 22
7666529 TAGATTGATA
*
7666539 ATTAAGTTATCACTGATTTATT
1 ATTAAGTTATCAATGATTTATT
* * *
7666561 ATTATGTTAT-TAGGTATTTATT
1 ATTAAGTTATCAATG-ATTTATT
*
7666583 ATTAAATTATCAATGATTTATT
1 ATTAAGTTATCAATGATTTATT
* * *
7666605 ATTAAATTATGAATGATTTACT
1 ATTAAGTTATCAATGATTTATT
* **
7666627 ACTAAGTTATTGAT-AGTTTA-T
1 ATTAAGTTATCAATGA-TTTATT
* ** * *
7666648 ACTAAGGCATTAATAATTTATT
1 ATTAAGTTATCAATGATTTATT
* *
7666670 ATAAAGTTAT-AACTAATTTATT
1 ATTAAGTTATCAA-TGATTTATT
*
7666692 ATGAAGTTAT
1 ATTAAGTTAT
7666702 TGATCATTTG
Statistics
Matches: 113, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
21 20 0.18
22 91 0.81
23 2 0.02
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.48
Consensus pattern (22 bp):
ATTAAGTTATCAATGATTTATT
Found at i:7666667 original size:21 final size:21
Alignment explanation
Indices: 7666620--7666668 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
7666610 ATTATGAATG
** *
7666620 ATTTACTACTAAGTTATTGATA
1 ATTTA-TACTAAGGCATTAATA
*
7666642 GTTTATACTAAGGCATTAATA
1 ATTTATACTAAGGCATTAATA
7666663 ATTTAT
1 ATTTAT
7666669 TATAAAGTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (21 bp):
ATTTATACTAAGGCATTAATA
Found at i:7666871 original size:21 final size:22
Alignment explanation
Indices: 7666847--7666943 Score: 78
Period size: 21 Copynumber: 4.5 Consensus size: 22
7666837 TATTATGCAT
7666847 TTACTAA-TTATCATTAATTTA
1 TTACTAAGTTATCATTAATTTA
* * *
7666868 TTACTAACTTTTCAATAA-TTA
1 TTACTAAGTTATCATTAATTTA
*
7666889 TCTATTAAGTTATCATT-ATTTA
1 T-TACTAAGTTATCATTAATTTA
**
7666911 TTGTTAAGTTATCATTGAA-TTA
1 TTACTAAGTTATCATT-AATTTA
*
7666933 CTAC-AAGTTAT
1 TTACTAAGTTAT
7666944 TTATGATTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
21 33 0.54
22 27 0.44
23 1 0.02
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.49
Consensus pattern (22 bp):
TTACTAAGTTATCATTAATTTA
Found at i:7667311 original size:22 final size:22
Alignment explanation
Indices: 7667239--7667367 Score: 82
Period size: 22 Copynumber: 5.8 Consensus size: 22
7667229 ATAATCATCA
* *
7667239 ATTTATAACTAAGTTA-TGAATG
1 ATTTATTATTAAGTTATTG-ATG
* * * * *
7667261 ATTTACTACTAAGTTGTTAATA
1 ATTTATTATTAAGTTATTGATG
*
7667283 ACTTATTATTAAGTTATTGATG
1 ATTTATTATTAAGTTATTGATG
* *
7667305 ATTTATTATAAAATTATT-ACTG
1 ATTTATTATTAAGTTATTGA-TG
* * * *
7667327 ATTTAATGTGAAGTAATTGATG
1 ATTTATTATTAAGTTATTGATG
*
7667349 ATTTATTATAAAAGTTATT
1 ATTTATTAT-TAAGTTATT
7667368 AATAATTAAC
Statistics
Matches: 80, Mismatches: 23, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
21 1 0.01
22 70 0.88
23 9 0.11
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.47
Consensus pattern (22 bp):
ATTTATTATTAAGTTATTGATG
Found at i:7667413 original size:22 final size:21
Alignment explanation
Indices: 7667387--7667499 Score: 93
Period size: 22 Copynumber: 5.2 Consensus size: 21
7667377 CTAATCTATA
*
7667387 ACTAAATTATCATTGATTTAT
1 ACTAAATTATCAATGATTTAT
*
7667408 AGCTAAGTTATCAA-GATTTACT
1 A-CTAAATTATCAATGATTTA-T
* * * * *
7667430 ATTACATTATTAGTGATTTACA
1 ACTAAATTATCAATGATTTA-T
* *
7667452 ACTAAGTTACCAATGATTTACT
1 ACTAAATTATCAATGATTTA-T
7667474 ACTAAATTATCAATGATTTATT
1 ACTAAATTATCAATGATTTA-T
7667496 ACTA
1 ACTA
7667500 TACTGTTATG
Statistics
Matches: 71, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
21 14 0.20
22 57 0.80
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (21 bp):
ACTAAATTATCAATGATTTAT
Found at i:7667609 original size:22 final size:22
Alignment explanation
Indices: 7667555--7667612 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7667545 ATTTCAGTGA
*
7667555 TTAACTACTAAATTATTATTGAT
1 TTAA-TACTAAGTTATTATTGAT
* *
7667578 TTATTGCTAAGTTATT-TATGAT
1 TTAATACTAAGTTATTAT-TGAT
7667600 TTAATACTAAGTT
1 TTAATACTAAGTT
7667613 TATAATTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 25 0.86
23 3 0.10
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (22 bp):
TTAATACTAAGTTATTATTGAT
Found at i:7667688 original size:22 final size:21
Alignment explanation
Indices: 7667642--7667709 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 21
7667632 AACCAAAATA
* *
7667642 GATTTACTATTAA-TATCACT
1 GATTTACTATAAATTATCAAT
* *
7667662 AATTTACTCATAAATTATCATT
1 GATTTACT-ATAAATTATCAAT
*
7667684 GATTTACTACTAAATTGTCAAT
1 GATTTACTA-TAAATTATCAAT
7667706 GATT
1 GATT
7667710 AATTATTAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 7 0.18
21 5 0.13
22 27 0.69
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (21 bp):
GATTTACTATAAATTATCAAT
Found at i:7667788 original size:44 final size:44
Alignment explanation
Indices: 7667740--7667849 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 44
7667730 TTTATTATCT
* *
7667740 TTGATTTAGGACTATGCTATTATGCATTTACAACTATGTTATAA
1 TTGATTTAGGACTAAGCTATTATGCATTTACAACTATATTATAA
** * * * * *
7667784 TTGATTTATTATTAAGTTATTATGCATTTACTATTATATTATTA
1 TTGATTTAGGACTAAGCTATTATGCATTTACAACTATATTATAA
** *
7667828 TTGATTTACTACTAAGTTATTA
1 TTGATTTAGGACTAAGCTATTA
7667850 ATTATTTGCT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (44 bp):
TTGATTTAGGACTAAGCTATTATGCATTTACAACTATATTATAA
Found at i:7667802 original size:22 final size:22
Alignment explanation
Indices: 7667777--7667974 Score: 102
Period size: 22 Copynumber: 9.0 Consensus size: 22
7667767 TTACAACTAT
*
7667777 GTTATAATTGATTTATTATTAA
1 GTTATAATTGATTTACTATTAA
*
7667799 GTTATTA-TGCATTTACTATTATA
1 GTTATAATTG-ATTTACTATTA-A
* *
7667822 -TTATTATTGATTTACTACTAA
1 GTTATAATTGATTTACTATTAA
* *
7667843 GTTATTAATT-ATTTGCTACTAA
1 GTTA-TAATTGATTTACTATTAA
* * * * **
7667865 ATTATCATTAATATGTTATTAA
1 GTTATAATTGATTTACTATTAA
* * *
7667887 GTTATCACTAATTTACTATACTAA
1 GTTATAATTGATTTACTAT--TAA
* * * *
7667911 ATTATCATTGATTAACCATTAA
1 GTTATAATTGATTTACTATTAA
*
7667933 TTTATCAA-TGA-TTACTATTAA
1 GTTAT-AATTGATTTACTATTAA
* *
7667954 GTTAT-ATTAATTTACTTTTAA
1 GTTATAATTGATTTACTATTAA
7667975 TTTTTGATTT
Statistics
Matches: 138, Mismatches: 27, Indels: 23
0.73 0.14 0.12
Matches are distributed among these distances:
19 1 0.01
20 2 0.01
21 28 0.20
22 82 0.59
23 8 0.06
24 17 0.12
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (22 bp):
GTTATAATTGATTTACTATTAA
Found at i:7667869 original size:44 final size:44
Alignment explanation
Indices: 7667757--7667869 Score: 120
Period size: 44 Copynumber: 2.6 Consensus size: 44
7667747 AGGACTATGC
* ** * *
7667757 TATTATGCATTTACAACTATGTTATAATTGATTTATTATTAAGT
1 TATTATGCATTTACTACTAAATTATAATTGATTTACTACTAAGT
* * *
7667801 TATTATGCATTTACTATTATATTATTATTGATTTACTACTAAGT
1 TATTATGCATTTACTACTAAATTATAATTGATTTACTACTAAGT
* *
7667845 TATTAAT-TATTTGCTACTAAATTAT
1 TATT-ATGCATTTACTACTAAATTAT
7667870 CATTAATATG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 56 0.97
45 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (44 bp):
TATTATGCATTTACTACTAAATTATAATTGATTTACTACTAAGT
Found at i:7667952 original size:21 final size:22
Alignment explanation
Indices: 7667912--7667958 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
7667902 CTATACTAAA
* *
7667912 TTATCATTGATTAACCATTAAT
1 TTATCAATGATTAACCATTAAG
*
7667934 TTATCAATGATT-ACTATTAAG
1 TTATCAATGATTAACCATTAAG
7667955 TTAT
1 TTAT
7667959 ATTAATTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (22 bp):
TTATCAATGATTAACCATTAAG
Found at i:7668362 original size:22 final size:21
Alignment explanation
Indices: 7668332--7668521 Score: 125
Period size: 22 Copynumber: 8.7 Consensus size: 21
7668322 TTAAATTAAA
7668332 TATTATTTACTATTAAGTTAT
1 TATTATTTACTATTAAGTTAT
*
7668353 TATTAGTTTAATATTAAGTTAT
1 TATTA-TTTACTATTAAGTTAT
* * *
7668375 CATTGATTTATTATTAAATTAT
1 TATT-ATTTACTATTAAGTTAT
* **
7668397 CACTTATTTTTTATTAAGTTAT
1 TA-TTATTTACTATTAAGTTAT
* *
7668419 CATTAATTTACTATTATA-TTGT
1 TATT-ATTTACTATTA-AGTTAT
* * *
7668441 TATGCATTTACAATTATG-TAT
1 TAT-TATTTACTATTAAGTTAT
* * *
7668462 AAATAATTTATTATTAAGTTATT
1 -TATTATTTACTATTAAGTTA-T
*
7668485 TATTATTTATTATTATA-TTAT
1 TATTATTTACTATTA-AGTTAT
7668506 TATATATTTACTATTA
1 TAT-TATTTACTATTA
7668522 TGTAATCAAT
Statistics
Matches: 135, Mismatches: 22, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
21 23 0.17
22 106 0.79
23 6 0.04
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (21 bp):
TATTATTTACTATTAAGTTAT
Found at i:7668396 original size:11 final size:11
Alignment explanation
Indices: 7668332--7668521 Score: 79
Period size: 11 Copynumber: 17.5 Consensus size: 11
7668322 TTAAATTAAA
*
7668332 TATT-ATTTAC
1 TATTAATTTAT
*
7668342 TATTAAGTTAT
1 TATTAATTTAT
* *
7668353 TATTAGTTTAA
1 TATTAATTTAT
*
7668364 TATTAAGTTAT
1 TATTAATTTAT
* *
7668375 CATTGATTTAT
1 TATTAATTTAT
*
7668386 TATTAAATTAT
1 TATTAATTTAT
* *
7668397 CACTT-ATTTTT
1 TA-TTAATTTAT
*
7668408 TATTAAGTTAT
1 TATTAATTTAT
* *
7668419 CATTAATTTAC
1 TATTAATTTAT
*
7668430 TATT-ATATTGT
1 TATTAAT-TTAT
** *
7668441 TATGCATTTAC
1 TATTAATTTAT
* *
7668452 AATT-ATGTAT
1 TATTAATTTAT
* *
7668462 AAATAATTTAT
1 TATTAATTTAT
*
7668473 TATTAAGTTATT
1 TATTAATTTA-T
7668485 TATT-ATTTAT
1 TATTAATTTAT
7668495 TATT-ATATTAT
1 TATTAAT-TTAT
*
7668506 TA-TATATTTAC
1 TATTA-ATTTAT
7668517 TATTA
1 TATTA
7668522 TGTAATCAAT
Statistics
Matches: 129, Mismatches: 40, Indels: 20
0.68 0.21 0.11
Matches are distributed among these distances:
10 23 0.18
11 93 0.72
12 13 0.10
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (11 bp):
TATTAATTTAT
Found at i:7668485 original size:15 final size:14
Alignment explanation
Indices: 7668467--7668521 Score: 58
Period size: 15 Copynumber: 3.8 Consensus size: 14
7668457 TGTATAAATA
7668467 ATTTATTATTAAGTT
1 ATTTATTATTAA-TT
*
7668482 ATTTATTATTTATT
1 ATTTATTATTAATT
7668496 ATTATATTATT-ATAT
1 ATT-TATTATTAAT-T
*
7668511 ATTTACTATTA
1 ATTTATTATTA
7668522 TGTAATCAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 13 0.37
15 22 0.63
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (14 bp):
ATTTATTATTAATT
Found at i:7668493 original size:65 final size:65
Alignment explanation
Indices: 7668402--7668525 Score: 169
Period size: 65 Copynumber: 1.9 Consensus size: 65
7668392 ATTATCACTT
* * *
7668402 ATTTTTTATTAAGTTATCATTAATTTACTATTATATTGTTATGCATTTACAATTATGTATAAATA
1 ATTTATTATTAAGTTATCATTAATTTACTATTATATTATTATACATTTACAATTATGTATAAATA
* * * *
7668467 ATTTATTATTAAGTTATTTATT-ATTTATTATTATATTATTATATATTTACTATTATGTA
1 ATTTATTATTAAGTTA-TCATTAATTTACTATTATATTATTATACATTTACAATTATGTA
7668526 ATCAATTATG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 47 0.92
66 4 0.08
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (65 bp):
ATTTATTATTAAGTTATCATTAATTTACTATTATATTATTATACATTTACAATTATGTATAAATA
Found at i:7668600 original size:22 final size:22
Alignment explanation
Indices: 7668568--7668638 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
7668558 TTATCAATTA
* * *
7668568 TTACTACTAAATTATTATTTAT
1 TTACTATTAAATTATTAATAAT
7668590 TTACTATTAAATTATTAATAAT
1 TTACTATTAAATTATTAATAAT
* * **
7668612 TTATTATTAAGTTATCCATAAT
1 TTACTATTAAATTATTAATAAT
7668634 TTACT
1 TTACT
7668639 TAGGGTTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.52
Consensus pattern (22 bp):
TTACTATTAAATTATTAATAAT
Found at i:7668834 original size:22 final size:20
Alignment explanation
Indices: 7668809--7668875 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 20
7668799 TCTGAATTTA
7668809 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTT-AAAT
*
7668831 ATAAAATTTTATTTTTAAAT
1 ATAAAATATTATTTTTAAAT
* *
7668851 ATAAATATATAATTATATAAAT
1 ATAAA-ATATTATT-TTTAAAT
7668873 ATA
1 ATA
7668876 TACATAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.23
21 11 0.28
22 19 0.49
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATAAAATATTATTTTTAAAT
Found at i:7668895 original size:12 final size:12
Alignment explanation
Indices: 7668852--7668916 Score: 67
Period size: 12 Copynumber: 5.1 Consensus size: 12
7668842 TTTTTAAATA
*
7668852 TAAATATATAAT
1 TAAATAAATAAT
*
7668864 TATATAAATATAT
1 TAAATAAATA-AT
7668877 ACATAAATAAATAAT
1 ---TAAATAAATAAT
7668892 TAAATAAATAAT
1 TAAATAAATAAT
*
7668904 TAAAAAAATAAT
1 TAAATAAATAAT
7668916 T
1 T
7668917 TTTATATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 32 0.71
13 2 0.04
15 2 0.04
16 9 0.20
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (12 bp):
TAAATAAATAAT
Found at i:7668907 original size:8 final size:8
Alignment explanation
Indices: 7668851--7668914 Score: 56
Period size: 8 Copynumber: 8.0 Consensus size: 8
7668841 ATTTTTAAAT
*
7668851 ATAAATAT
1 ATAAATAA
* *
7668859 ATAATTAT
1 ATAAATAA
*
7668867 ATAAATAT
1 ATAAATAA
*
7668875 ATACATAA
1 ATAAATAA
7668883 ATAAATAA
1 ATAAATAA
*
7668891 TTAAATAA
1 ATAAATAA
*
7668899 ATAATTAA
1 ATAAATAA
*
7668907 AAAAATAA
1 ATAAATAA
7668915 TTTTTATATA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 46 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (8 bp):
ATAAATAA
Found at i:7669146 original size:22 final size:22
Alignment explanation
Indices: 7669098--7669233 Score: 75
Period size: 22 Copynumber: 6.3 Consensus size: 22
7669088 GTCAATCCTA
* *
7669098 AATTTACTATACAATAATAATT
1 AATTTACTATAAAATTATAATT
* * *
7669120 GATTTAGTATAAAATTATTATT
1 AATTTACTATAAAATTATAATT
* * *
7669142 AATTT--TATCTAAATTATCACT
1 AATTTACTAT-AAAATTATAATT
* **
7669163 AATTTACAATAAAATTATAAAA
1 AATTTACTATAAAATTATAATT
* * *
7669185 AATTAACTACT-ATATTATTA-T
1 AATTTACTA-TAAAATTATAATT
*
7669206 ATATTTACTAT-TAATTATAATT
1 A-ATTTACTATAAAATTATAATT
7669228 AATTTA
1 AATTTA
7669234 TCATTAAATC
Statistics
Matches: 85, Mismatches: 23, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
20 3 0.04
21 27 0.32
22 52 0.61
23 3 0.04
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (22 bp):
AATTTACTATAAAATTATAATT
Found at i:7674847 original size:16 final size:16
Alignment explanation
Indices: 7674828--7674872 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
7674818 ATACAGTTTA
7674828 ATTTGATATAAATTTT
1 ATTTGATATAAATTTT
7674844 ATTTG-TA-AAATTTT
1 ATTTGATATAAATTTT
* *
7674858 AATTGATTTAAATTT
1 ATTTGATATAAATTT
7674873 AAATAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 11 0.44
15 3 0.12
16 11 0.44
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (16 bp):
ATTTGATATAAATTTT
Found at i:7681492 original size:22 final size:22
Alignment explanation
Indices: 7681466--7681510 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
7681456 GGAATACTTC
*
7681466 ATAGATGAATAGTAATCTCGAT
1 ATAGACGAATAGTAATCTCGAT
7681488 ATAGACGAATAGTAATCTCGAT
1 ATAGACGAATAGTAATCTCGAT
7681510 A
1 A
7681511 AAAGATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (22 bp):
ATAGACGAATAGTAATCTCGAT
Found at i:7684022 original size:17 final size:18
Alignment explanation
Indices: 7683996--7684031 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7683986 GTTTGTCATT
7683996 AAATTCAAAAG-TTCACA
1 AAATTCAAAAGATTCACA
*
7684013 AAATTTAAAAGATTCACA
1 AAATTCAAAAGATTCACA
7684031 A
1 A
7684032 GGTTTGATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.25
Consensus pattern (18 bp):
AAATTCAAAAGATTCACA
Found at i:7684216 original size:35 final size:35
Alignment explanation
Indices: 7684140--7684232 Score: 107
Period size: 35 Copynumber: 2.7 Consensus size: 35
7684130 AATAATTCGC
* * **
7684140 CAAATGATTCAAGTTTCACTAAGATTTAAAAATTCA
1 CAAAAGATTCAAGTTTCAC-AAAAAATAAAAATTCA
* *
7684176 TAAAAGATTCAAGTTTCACAAAAAATCAAAATTCA
1 CAAAAGATTCAAGTTTCACAAAAAATAAAAATTCA
*
7684211 CAAAAGATTCAAGATTC-CAAAA
1 CAAAAGATTCAAGTTTCACAAAA
7684233 GGTTTCAAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 5 0.10
35 27 0.55
36 17 0.35
ACGTcount: A:0.51, C:0.15, G:0.08, T:0.27
Consensus pattern (35 bp):
CAAAAGATTCAAGTTTCACAAAAAATAAAAATTCA
Found at i:7684231 original size:17 final size:18
Alignment explanation
Indices: 7684140--7684255 Score: 78
Period size: 18 Copynumber: 6.6 Consensus size: 18
7684130 AATAATTCGC
* *
7684140 CAAATGATTCAAGTTTCA
1 CAAAAGATTCAAGATTCA
* * *
7684158 C-TAAGATTTAAAAATTCA
1 CAAAAGA-TTCAAGATTCA
* *
7684176 TAAAAGATTCAAGTTTCA
1 CAAAAGATTCAAGATTCA
* *
7684194 CAAAA-AATCAAAATTCA
1 CAAAAGATTCAAGATTCA
7684211 CAAAAGATTCAAGATTC-
1 CAAAAGATTCAAGATTCA
* * *
7684228 CAAAAGGTTTCAAGAATCG
1 CAAAA-GATTCAAGATTCA
7684247 C-AAAGATTC
1 CAAAAGATTC
7684256 TAAAATTTTC
Statistics
Matches: 74, Mismatches: 19, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
17 26 0.35
18 43 0.58
19 5 0.07
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (18 bp):
CAAAAGATTCAAGATTCA
Found at i:7684268 original size:18 final size:18
Alignment explanation
Indices: 7684246--7684287 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7684236 TTCAAGAATC
*
7684246 GCAAAGATTCTAAAATTT
1 GCAAAGATTCCAAAATTT
* *
7684264 TCAAAGATTCCAAGATTT
1 GCAAAGATTCCAAAATTT
7684282 GCAAAG
1 GCAAAG
7684288 TTTTTAAGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (18 bp):
GCAAAGATTCCAAAATTT
Found at i:7684320 original size:18 final size:18
Alignment explanation
Indices: 7684293--7684446 Score: 68
Period size: 18 Copynumber: 8.5 Consensus size: 18
7684283 CAAAGTTTTT
7684293 AAGA-TTCAAGATTCTCA
1 AAGATTTCAAGATTCTCA
* **
7684310 CAGATTTCAAGATT-TGTG
1 AAGATTTCAAGATTCT-CA
* *
7684328 AAGGTTCTCAA-ATTCACAA
1 AAGATT-TCAAGATTCTC-A
*
7684347 AAGATTTCAAGATTCGTAA
1 AAGATTTCAAGATTC-TCA
*
7684366 AACATTTCAAGATTCTCA
1 AAGATTTCAAGATTCTCA
* * *
7684384 GAGGTTTCAATATTCGT-A
1 AAGATTTCAAGATTC-TCA
* * *
7684402 AAAACTTCAAGATTCACA
1 AAGATTTCAAGATTCTCA
**
7684420 ACA-A-TTCAAAGATTAGCA
1 A-AGATTTC-AAGATTCTCA
7684438 AAGATTTCA
1 AAGATTTCA
7684447 TATTCGCAAG
Statistics
Matches: 99, Mismatches: 25, Indels: 25
0.66 0.17 0.17
Matches are distributed among these distances:
17 8 0.08
18 58 0.59
19 33 0.33
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (18 bp):
AAGATTTCAAGATTCTCA
Found at i:7684321 original size:25 final size:26
Alignment explanation
Indices: 7684262--7684323 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
7684252 ATTCTAAAAT
*
7684262 TTTCAAAGATTCCAAGATTTGCAAAGT
1 TTTC-AAGATTCCAAGATTTGCAAAGA
* *
7684289 TTTTAAGATT-CAAGATTCT-CACAGA
1 TTTCAAGATTCCAAGATT-TGCAAAGA
7684314 TTTCAAGATT
1 TTTCAAGATT
7684324 TGTGAAGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
25 20 0.67
26 7 0.23
27 3 0.10
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (26 bp):
TTTCAAGATTCCAAGATTTGCAAAGA
Found at i:7684461 original size:17 final size:17
Alignment explanation
Indices: 7684441--7684579 Score: 90
Period size: 17 Copynumber: 8.2 Consensus size: 17
7684431 ATTAGCAAAG
* *
7684441 ATTTCATATTCGCAAGA
1 ATTTCAGATTTGCAAGA
*
7684458 ATTTTAGATTTGCAAGA
1 ATTTCAGATTTGCAAGA
* *
7684475 A-TTCAAATTTGTAAGA
1 ATTTCAGATTTGCAAGA
* *
7684491 TTTTTAG-TTTCGCAAGA
1 ATTTCAGATTT-GCAAGA
* * *
7684508 A-TCCATATTTGTAAGA
1 ATTTCAGATTTGCAAGA
*
7684524 A-TTCAAAGATTCGCAAGA
1 ATTTC--AGATTTGCAAGA
* *
7684542 CTTTC-GAGTTAGCAAGA
1 ATTTCAGA-TTTGCAAGA
7684559 ATTTCAGATTTGCAAGA
1 ATTTCAGATTTGCAAGA
7684576 ATTT
1 ATTT
7684580 TAGTTTTAAA
Statistics
Matches: 91, Mismatches: 23, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
16 27 0.30
17 50 0.55
18 11 0.12
19 3 0.03
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (17 bp):
ATTTCAGATTTGCAAGA
Found at i:7684496 original size:33 final size:33
Alignment explanation
Indices: 7684454--7684526 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
7684444 TCATATTCGC
*
7684454 AAGAATTTTAGATTT-GCAAGAATTCAAATTTGT
1 AAGAATTTTAG-TTTCGCAAGAATCCAAATTTGT
* *
7684487 AAGATTTTTAGTTTCGCAAGAATCCATATTTGT
1 AAGAATTTTAGTTTCGCAAGAATCCAAATTTGT
7684520 AAGAATT
1 AAGAATT
7684527 CAAAGATTCG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 3 0.09
33 32 0.91
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (33 bp):
AAGAATTTTAGTTTCGCAAGAATCCAAATTTGT
Found at i:7684946 original size:45 final size:44
Alignment explanation
Indices: 7684868--7685013 Score: 129
Period size: 44 Copynumber: 3.3 Consensus size: 44
7684858 ATTTCAAGGA
*
7684868 TCACATCC-AAAA-TACAAAAATTTTCATT-CAAAAATTGTAGAGAT
1 TCACATCCAAAAATTA-AAAAA-TTTCATTAAAAAAATT-TAGAGAT
* **
7684912 TCACATCCAAAAATTAAATAATTTCATTAAAAAAACATA-AGGAT
1 TCACATCCAAAAATTAAAAAATTTCATTAAAAAAATTTAGA-GAT
* * * * *
7684956 TTACATCCAAAATTTAAAAAATTCACATTAAAAAAACTTTAGCGTT
1 TCACATCCAAAAATTAAAAAATT-TCATTAAAAAAA-TTTAGAGAT
7685002 TCACATCCAAAA
1 TCACATCCAAAA
7685014 TTTCGAAAGT
Statistics
Matches: 82, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 40 0.49
45 24 0.29
46 17 0.21
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (44 bp):
TCACATCCAAAAATTAAAAAATTTCATTAAAAAAATTTAGAGAT
Found at i:7685010 original size:46 final size:46
Alignment explanation
Indices: 7684868--7685056 Score: 162
Period size: 46 Copynumber: 4.2 Consensus size: 46
7684858 ATTTCAAGGA
* *
7684868 TCACATCCAAAA--TACAAAAATTTTCATT-CAAAAA-TTGTAGAGA-T
1 TCACATCCAAAATTTA-AAAAATTCTCATTAAAAAAACTT-TAG-GATT
* * * *
7684912 TCACATCCAAAAATTAAATAATT-TCATTAAAAAAACATAAGGATT
1 TCACATCCAAAATTTAAAAAATTCTCATTAAAAAAACTTTAGGATT
*
7684957 T-ACATCCAAAATTTAAAAAATTCACATTAAAAAAACTTTAGCG-TT
1 TCACATCCAAAATTTAAAAAATTCTCATTAAAAAAACTTTAG-GATT
** * * *
7685002 TCACATCCAAAATTTCGAAAGTTCTCATTTAAAAAACTTT-GTAATT
1 TCACATCCAAAATTTAAAAAATTCTCATTAAAAAAACTTTAG-GATT
7685048 TCACATCCA
1 TCACATCCA
7685057 GAGGTCTTAT
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
44 38 0.32
45 34 0.28
46 48 0.40
ACGTcount: A:0.47, C:0.17, G:0.05, T:0.31
Consensus pattern (46 bp):
TCACATCCAAAATTTAAAAAATTCTCATTAAAAAAACTTTAGGATT
Found at i:7686441 original size:28 final size:29
Alignment explanation
Indices: 7686410--7686472 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
7686400 TGACTAGTTA
*
7686410 TATTTAAAATTTTATTTTATTATT-TTAT
1 TATTTAAAATTTAATTTTATTATTATTAT
**
7686438 TATTCT-TTATTTAATTTTATTATTATTAT
1 TATT-TAAAATTTAATTTTATTATTATTAT
*
7686467 TGTTTA
1 TATTTA
7686473 TGAATTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
28 20 0.71
29 8 0.29
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (29 bp):
TATTTAAAATTTAATTTTATTATTATTAT
Found at i:7686447 original size:23 final size:23
Alignment explanation
Indices: 7686420--7686464 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7686410 TATTTAAAAT
*
7686420 TTTATTTTATTATT-TTATTATTC
1 TTTATTTAATT-TTATTATTATTC
7686443 TTTATTTAATTTTATTATTATT
1 TTTATTTAATTTTATTATTATT
7686465 ATTGTTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTATTTAATTTTATTATTATTC
Found at i:7686480 original size:23 final size:23
Alignment explanation
Indices: 7686428--7686480 Score: 54
Period size: 26 Copynumber: 2.2 Consensus size: 23
7686418 ATTTTATTTT
*
7686428 ATTATTTTATTATTCTTTATTTA
1 ATTATTTTATTATTCTTTATTGA
*
7686451 ATTTTATTATTATTATTGTTTA-TGA
1 A--TTATT-TTATTATTCTTTATTGA
7686476 ATTAT
1 ATTAT
7686481 ATGAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
23 5 0.20
25 8 0.32
26 12 0.48
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (23 bp):
ATTATTTTATTATTCTTTATTGA
Found at i:7686679 original size:14 final size:14
Alignment explanation
Indices: 7686657--7686721 Score: 62
Period size: 14 Copynumber: 4.8 Consensus size: 14
7686647 TCAAGTTTCA
*
7686657 TTTACGGTTTTGAT
1 TTTAGGGTTTTGAT
*
7686671 TTTAGGG-TTTCA-
1 TTTAGGGTTTTGAT
* *
7686683 TTTAGAGTTTTAAT
1 TTTAGGGTTTTGAT
**
7686697 TTTAAAGTTTTGAT
1 TTTAGGGTTTTGAT
7686711 TTTAGGGTTTT
1 TTTAGGGTTTT
7686722 AGTAGTTTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
12 6 0.15
13 8 0.20
14 27 0.66
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (14 bp):
TTTAGGGTTTTGAT
Found at i:7686692 original size:26 final size:26
Alignment explanation
Indices: 7686651--7686700 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
7686641 AGAGTTTCAA
*
7686651 GTTTCATTTACGGTTTTGATTTTAGG
1 GTTTCATTTACGGTTTTAATTTTAGG
7686677 GTTTCATTTA-GAGTTTTAATTTTA
1 GTTTCATTTACG-GTTTTAATTTTA
7686701 AAGTTTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.20, C:0.06, G:0.18, T:0.56
Consensus pattern (26 bp):
GTTTCATTTACGGTTTTAATTTTAGG
Found at i:7686706 original size:26 final size:26
Alignment explanation
Indices: 7686649--7686706 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
7686639 TTAGAGTTTC
*
7686649 AAGTTTCATTTACGGTTTTGATTTTA
1 AAGTTTCATTTACGGTTTTAATTTTA
**
7686675 GGGTTTCATTTA-GAGTTTTAATTTTA
1 AAGTTTCATTTACG-GTTTTAATTTTA
7686701 AAGTTT
1 AAGTTT
7686707 TGATTTTAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.24, C:0.05, G:0.17, T:0.53
Consensus pattern (26 bp):
AAGTTTCATTTACGGTTTTAATTTTA
Found at i:7686938 original size:8 final size:7
Alignment explanation
Indices: 7686919--7686948 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
7686909 TTAGTTTCTC
7686919 ATTTTTA
1 ATTTTTA
7686926 ATTTTTA
1 ATTTTTA
7686933 ATTTTTA
1 ATTTTTA
7686940 ATATTTTA
1 AT-TTTTA
7686948 A
1 A
7686949 AGTCTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.73
8 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (7 bp):
ATTTTTA
Found at i:7690028 original size:15 final size:15
Alignment explanation
Indices: 7690002--7690050 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
7689992 CTTTTTTCTT
*
7690002 TTTTTTCATTTTTCCC
1 TTTTTTC-TTTTTCAC
*
7690018 TTTTTTC-TTTTCAT
1 TTTTTTCTTTTTCAC
*
7690032 TTTTTTATTTTTCAC
1 TTTTTTCTTTTTCAC
7690047 TTTT
1 TTTT
7690051 CATTATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 11 0.39
15 10 0.36
16 7 0.25
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTCTTTTTCAC
Found at i:7690042 original size:21 final size:21
Alignment explanation
Indices: 7690000--7690060 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
7689990 TTCTTTTTTC
***
7690000 TTTT-TTTTCATTTTTCCCTT
1 TTTTCTTTTCATTTTTTTATT
7690020 TTTTCTTTTCATTTTTTTATT
1 TTTTCTTTTCATTTTTTTATT
*
7690041 TTTCACTTTTCATTATTTTT
1 TTT-TCTTTTCATT-TTTTT
7690061 CAAGAAAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 4 0.12
21 16 0.47
22 9 0.26
23 5 0.15
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTCTTTTCATTTTTTTATT
Found at i:7693725 original size:276 final size:277
Alignment explanation
Indices: 7693229--7693777 Score: 985
Period size: 276 Copynumber: 2.0 Consensus size: 277
7693219 TAAATGCATG
*
7693229 CATAATAAAAGAAAAGGGTTAGTATACACATAATATATACAAAGAACAATATATAAATGTCCCAT
1 CATAATAAAAGAAAAGGGTTAGTATACACATAATATATACAAAAAACAATATATAAATGTCCCAT
* *
7693294 CATATGTCTTATTTAGAATTCTCTAACATAAAGGAAGGTAAAACTCTAACCTAGGTTTGCATCCT
66 CATATGTCTTATTTAGAATTCTCTAACACAAAGGAAGGCAAAACTCTAACCTAGGTTTGCATCCT
*
7693359 TAGGGTTTATTTACATGCAAGGTTCAAAGGTTTAACAGTCTAAAGGTTTCCAAATTTTTTCTCAT
131 TAGGGTTTATTTACAAGCAAGGTTCAAAGGTTTAACAGTCTAAAGGTTTCCAAATTTTTTCTCAT
*
7693424 ATTATTATCTATTATAGACTTGTAAGGCATCCAAATCTTCGCCCAT-ATAAGCTACAAACAAAAA
196 ATTATTATCCATTATAGACTTGTAAGGCATCCAAATCTTCGCCCATCATAAGCTACAAACAAAAA
7693488 TGGTTCAATTTGAGTGA
261 TGGTTCAATTTGAGTGA
7693505 CATAATAAAAGAAAAGGGTTAGTATACACATAATATATACAAAAAACAATATATAAATGTCCCAT
1 CATAATAAAAGAAAAGGGTTAGTATACACATAATATATACAAAAAACAATATATAAATGTCCCAT
* *
7693570 CATATGTCTTGTTTAGAATTCTCTAACACAAAGGAAGGCAAAGCTCTAACCTAGGTTTGCATCCT
66 CATATGTCTTATTTAGAATTCTCTAACACAAAGGAAGGCAAAACTCTAACCTAGGTTTGCATCCT
* *
7693635 TAGGGTTTATTTCCAAGCAAGG-TCTAAAGGTTTAACAGTCTAAAGGTTTCCAAATTTTTTCTTA
131 TAGGGTTTATTTACAAGCAAGGTTC-AAAGGTTTAACAGTCTAAAGGTTTCCAAATTTTTTCTCA
*
7693699 TATTATTATCCATTATAGAGTTGTAAGGCATCCAAATCTTCGCCCATCATAAGCTACAAACAAAA
195 TATTATTATCCATTATAGACTTGTAAGGCATCCAAATCTTCGCCCATCATAAGCTACAAACAAAA
7693764 ATGGTTCAATTTGA
260 ATGGTTCAATTTGA
7693778 ATGGGAGTAT
Statistics
Matches: 261, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
275 2 0.01
276 228 0.87
277 31 0.12
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (277 bp):
CATAATAAAAGAAAAGGGTTAGTATACACATAATATATACAAAAAACAATATATAAATGTCCCAT
CATATGTCTTATTTAGAATTCTCTAACACAAAGGAAGGCAAAACTCTAACCTAGGTTTGCATCCT
TAGGGTTTATTTACAAGCAAGGTTCAAAGGTTTAACAGTCTAAAGGTTTCCAAATTTTTTCTCAT
ATTATTATCCATTATAGACTTGTAAGGCATCCAAATCTTCGCCCATCATAAGCTACAAACAAAAA
TGGTTCAATTTGAGTGA
Found at i:7696031 original size:15 final size:15
Alignment explanation
Indices: 7695991--7696032 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
7695981 TGATTTTATT
*
7695991 TGATTTGATTTTTTA
1 TGATTTGGTTTTTTA
* *
7696006 TGAATTAGTTTTTTA
1 TGATTTGGTTTTTTA
7696021 TGATTTGGTTTT
1 TGATTTGGTTTT
7696033 GCATGATCAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.17, T:0.64
Consensus pattern (15 bp):
TGATTTGGTTTTTTA
Found at i:7704176 original size:33 final size:33
Alignment explanation
Indices: 7704116--7704178 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
7704106 CTGCAACTTC
* * *
7704116 TACCCTATCCACATCTTTATTTTCTATCCTTGT
1 TACCCTATCCACATATTCATTTCCTATCCTTGT
7704149 TACCCTATCC-CAATATTCATTTCCTATCCT
1 TACCCTATCCAC-ATATTCATTTCCTATCCT
7704179 CGCTGCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 1 0.04
33 25 0.96
ACGTcount: A:0.21, C:0.33, G:0.02, T:0.44
Consensus pattern (33 bp):
TACCCTATCCACATATTCATTTCCTATCCTTGT
Found at i:7704243 original size:33 final size:33
Alignment explanation
Indices: 7704192--7704275 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 33
7704182 TGCCTAAACC
* *
7704192 ACATCTTCA-TTTCTTACCCTTGCTGCTTCAGCT
1 ACATCTTCATTTTC-TACCCCTGCTGCTTCAACT
* * *
7704225 ATATCTTCATTTTCTACCCCTGTTTCTTCAACT
1 ACATCTTCATTTTCTACCCCTGCTGCTTCAACT
*
7704258 ACATCTTGATTTTCTACC
1 ACATCTTCATTTTCTACC
7704276 TCTTCATTCC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 39 0.91
34 4 0.09
ACGTcount: A:0.18, C:0.31, G:0.06, T:0.45
Consensus pattern (33 bp):
ACATCTTCATTTTCTACCCCTGCTGCTTCAACT
Found at i:7704709 original size:16 final size:16
Alignment explanation
Indices: 7704685--7704725 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
7704675 AAATTAAATT
7704685 TTATCACTATATAATTTA
1 TTAT-ACTATA-AATTTA
7704703 TT-TACTATAAATTTA
1 TTATACTATAAATTTA
7704718 TTATACTA
1 TTATACTA
7704726 CTAATCTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.36
16 11 0.50
17 1 0.05
18 2 0.09
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (16 bp):
TTATACTATAAATTTA
Found at i:7707383 original size:79 final size:79
Alignment explanation
Indices: 7707251--7707409 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 79
7707241 TTCTAGAGAA
* *
7707251 AAATTGAAGATATAGAGAATTGATGACTGTTCATGTCAGTCTAACTAGGTAATAATTAATGTTAG
1 AAATTGAAGATATAGAGAATTGATGACTGCTCATGTCAGTCTAACTAGATAATAATTAATGTTAG
7707316 AGATTATGTTCGAT
66 AGATTATGTTCGAT
7707330 AAATTGAAGATATAGAGAATTGATGACTGCTCATGTCAGTCTAACTAGATAATAATTAATGTTAG
1 AAATTGAAGATATAGAGAATTGATGACTGCTCATGTCAGTCTAACTAGATAATAATTAATGTTAG
7707395 AGATTATGTTCGAT
66 AGATTATGTTCGAT
7707409 A
1 A
7707410 TTTTGTACAT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (79 bp):
AAATTGAAGATATAGAGAATTGATGACTGCTCATGTCAGTCTAACTAGATAATAATTAATGTTAG
AGATTATGTTCGAT
Found at i:7714648 original size:15 final size:15
Alignment explanation
Indices: 7714628--7714659 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7714618 ACAATATGAC
7714628 ATCCATAGAATAAGA
1 ATCCATAGAATAAGA
7714643 ATCCATAGAATAAGA
1 ATCCATAGAATAAGA
7714658 AT
1 AT
7714660 GTATTAGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.22
Consensus pattern (15 bp):
ATCCATAGAATAAGA
Found at i:7724307 original size:14 final size:15
Alignment explanation
Indices: 7724288--7724316 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7724278 GGATACATTT
7724288 TTTATCAC-ATTACG
1 TTTATCACGATTACG
7724302 TTTATCACGATTACG
1 TTTATCACGATTACG
7724317 GATATAACGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (15 bp):
TTTATCACGATTACG
Found at i:7726348 original size:3 final size:3
Alignment explanation
Indices: 7726340--7726378 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
7726330 ATTAATACAA
7726340 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AA
7726379 CTGATAGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7732800 original size:23 final size:23
Alignment explanation
Indices: 7732774--7732833 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 23
7732764 TTTTATTATT
*
7732774 CTTGTTAGCCTTTTCTTCAATCA
1 CTTGTTAGCCTTTTCTTCAACCA
*
7732797 CTTGTT-GTCC-TTTCTTTAACCA
1 CTTGTTAG-CCTTTTCTTCAACCA
*
7732819 CTTGTTGAGTCTTTT
1 CTTGTT-AGCCTTTT
7732834 GTTTTGTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
22 17 0.57
23 9 0.30
24 4 0.13
ACGTcount: A:0.13, C:0.23, G:0.12, T:0.52
Consensus pattern (23 bp):
CTTGTTAGCCTTTTCTTCAACCA
Found at i:7733108 original size:2 final size:2
Alignment explanation
Indices: 7733101--7733136 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7733091 AAATTAAATT
7733101 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7733137 GCCCGTCACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7744131 original size:101 final size:100
Alignment explanation
Indices: 7744001--7744197 Score: 369
Period size: 101 Copynumber: 2.0 Consensus size: 100
7743991 TTAAAACATG
7744001 TAGCAGAACAGGAGAACATCGCTAGCTAGATCAAGGAAAAGTGGAGCAGCCCTAGCTCCTAGATA
1 TAGCAGAACAGGAGAACATCGCTAGCTAGATCAAGGAAAAGTGGAGCAGCCCTAGCTCCTAGATA
7744066 TAATATATCATGTTTTCCTAAAAACTGGCAACAAA
66 TAATATATCATGTTTTCCTAAAAACTGGCAACAAA
7744101 TAGCAGAACAGGAGAAACATCAG-TAGCTAGATCAAGGAAAAGTGGAGCAGCCCTAGCTCCTAGA
1 TAGCAGAACAGGAG-AACATC-GCTAGCTAGATCAAGGAAAAGTGGAGCAGCCCTAGCTCCTAGA
7744165 TATAATATATCATGTTTTCCTAAAAACTGGCAA
64 TATAATATATCATGTTTTCCTAAAAACTGGCAA
7744198 ATGAAAGATA
Statistics
Matches: 95, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
100 14 0.15
101 80 0.84
102 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.21
Consensus pattern (100 bp):
TAGCAGAACAGGAGAACATCGCTAGCTAGATCAAGGAAAAGTGGAGCAGCCCTAGCTCCTAGATA
TAATATATCATGTTTTCCTAAAAACTGGCAACAAA
Found at i:7746458 original size:17 final size:17
Alignment explanation
Indices: 7746438--7746472 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7746428 ATAAAAATTA
7746438 TTTGATGAAA-AGAAAAT
1 TTTGAT-AAATAGAAAAT
7746455 TTTGATAAATAGAAAAT
1 TTTGATAAATAGAAAAT
7746472 T
1 T
7746473 AGACAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.34
Consensus pattern (17 bp):
TTTGATAAATAGAAAAT
Found at i:7746683 original size:18 final size:18
Alignment explanation
Indices: 7746640--7746677 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7746630 CAATACTAAG
*
7746640 TACAATTTATGTTTTTAT
1 TACAATTTATGCTTTTAT
7746658 TACAATTTATGCTTTTAT
1 TACAATTTATGCTTTTAT
7746676 TA
1 TA
7746678 ATATTTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.08, G:0.05, T:0.58
Consensus pattern (18 bp):
TACAATTTATGCTTTTAT
Found at i:7761561 original size:3 final size:3
Alignment explanation
Indices: 7761553--7761602 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
7761543 ATAATAGAAT
7761553 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7761601 TT
1 TT
7761603 TATTTCATAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7763077 original size:3 final size:3
Alignment explanation
Indices: 7763069--7763097 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7763059 ATTATTTCTT
7763069 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7763098 TATTTTATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7763105 original size:9 final size:10
Alignment explanation
Indices: 7763068--7763105 Score: 55
Period size: 9 Copynumber: 4.1 Consensus size: 10
7763058 CATTATTTCT
7763068 TTTATTATTA
1 TTTATTATTA
7763078 -TTATTATTA
1 TTTATTATTA
7763087 -TTATTATTA
1 TTTATTATTA
7763096 TTTATT-TTA
1 TTTATTATTA
7763105 T
1 T
7763106 GAAAAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 22 0.81
10 5 0.19
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTATTATTA
Found at i:7763244 original size:49 final size:49
Alignment explanation
Indices: 7763172--7763311 Score: 128
Period size: 47 Copynumber: 2.9 Consensus size: 49
7763162 ATGCATAAAA
* * **
7763172 AATGGCTTTTCACATTTCATAAAAGAAAGTAAATG-AGGT-TTTTAAAGTT
1 AATGGATTTTCACGTTTCATAAAAGAAAGTAAA-GAAGGTCTTCAAAAG-T
* * *
7763221 AATGGTTTTTCAGGTTTCATAAAAG-GAGTAAAGAAGGTCTTCAAAAGT
1 AATGGATTTTCACGTTTCATAAAAGAAAGTAAAGAAGGTCTTCAAAAGT
* * * *
7763269 AAT-GATTTTCATGTTTCATAAAA-AAAGCAAAAAAGGTTTTCAA
1 AATGGATTTTCACGTTTCATAAAAGAAAGTAAAGAAGGTCTTCAA
7763312 TTTACAACCA
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
47 34 0.45
48 14 0.18
49 28 0.37
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.34
Consensus pattern (49 bp):
AATGGATTTTCACGTTTCATAAAAGAAAGTAAAGAAGGTCTTCAAAAGT
Found at i:7763676 original size:19 final size:21
Alignment explanation
Indices: 7763643--7763682 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
7763633 TTTTTTTCCA
7763643 CTCTCTCTTTCTCTTTTTTTT
1 CTCTCTCTTTCTCTTTTTTTT
7763664 CTCT-TCTTT-TCTTTTTTTT
1 CTCTCTCTTTCTCTTTTTTTT
7763683 TTTGGTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.53
20 5 0.26
21 4 0.21
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (21 bp):
CTCTCTCTTTCTCTTTTTTTT
Found at i:7764067 original size:12 final size:11
Alignment explanation
Indices: 7764038--7764069 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
7764028 AAAATTATGG
7764038 TGTAAAAATTT
1 TGTAAAAATTT
7764049 TGTAAAAATTT
1 TGTAAAAATTT
7764060 TGTAAAAATT
1 TGTAAAAATT
7764070 CATGTTCGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (11 bp):
TGTAAAAATTT
Found at i:7771469 original size:8 final size:8
Alignment explanation
Indices: 7771456--7771502 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
7771446 AAGGTATGCA
7771456 AAAAAAAT
1 AAAAAAAT
7771464 AAAAAAAT
1 AAAAAAAT
*
7771472 -GAAAAAT
1 AAAAAAAT
7771479 AAAAAGAAGT
1 AAAAA-AA-T
*
7771489 AAAAAAAG
1 AAAAAAAT
7771497 AAAAAA
1 AAAAAA
7771503 GAAAACTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
7 6 0.18
8 17 0.52
9 4 0.12
10 6 0.18
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (8 bp):
AAAAAAAT
Found at i:7771482 original size:24 final size:24
Alignment explanation
Indices: 7771455--7771501 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7771445 AAAGGTATGC
7771455 AAAAA-AAATAAAAAAATGAAAAAT
1 AAAAAGAAATAAAAAAA-GAAAAAT
*
7771479 AAAAAGAAGTAAAAAAAGAAAAA
1 AAAAAGAAATAAAAAAAGAAAAA
7771502 AGAAAACTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (24 bp):
AAAAAGAAATAAAAAAAGAAAAAT
Found at i:7771483 original size:25 final size:24
Alignment explanation
Indices: 7771455--7771501 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
7771445 AAAGGTATGC
7771455 AAAAAAAATAAAAAAATGAAAAATA
1 AAAAAAAATAAAAAAA-GAAAAATA
* *
7771480 AAAAGAAGTAAAAAAAGAAAAA
1 AAAAAAAATAAAAAAAGAAAAA
7771502 AGAAAACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (24 bp):
AAAAAAAATAAAAAAAGAAAAATA
Found at i:7771502 original size:25 final size:24
Alignment explanation
Indices: 7771455--7771507 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
7771445 AAAGGTATGC
*
7771455 AAAAAAAATAAAAAAATGAAAAAT
1 AAAAAAAATAAAAAAATGAAAAAG
*
7771479 AAAAAGAAGTAAAAAAA-GAAAAAAG
1 AAAAA-AAATAAAAAAATG-AAAAAG
7771504 AAAA
1 AAAA
7771508 CTTAAACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.08
Consensus pattern (24 bp):
AAAAAAAATAAAAAAATGAAAAAG
Found at i:7772249 original size:106 final size:106
Alignment explanation
Indices: 7772090--7772301 Score: 406
Period size: 106 Copynumber: 2.0 Consensus size: 106
7772080 GAGATACTGA
7772090 AAAGCTAAAAAAGAATACATGAGATGATGGAGTCTTAAGAACCTTGTTACTACGATTAGAATTTC
1 AAAGCTAAAAAAGAATACATGAGATGATGGAGTCTTAAGAACCTTGTTACTACGATTAGAATTTC
7772155 TTGACATTGATTTAGTGACATTTGCATTACATATATCGCAT
66 TTGACATTGATTTAGTGACATTTGCATTACATATATCGCAT
* *
7772196 AAAGCTGAAAAAGAATACATGAGATGGTGGAGTCTTAAGAACCTTGTTACTACGATTAGAATTTC
1 AAAGCTAAAAAAGAATACATGAGATGATGGAGTCTTAAGAACCTTGTTACTACGATTAGAATTTC
7772261 TTGACATTGATTTAGTGACATTTGCATTACATATATCGCAT
66 TTGACATTGATTTAGTGACATTTGCATTACATATATCGCAT
7772302 TTGCATTTTA
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 104 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (106 bp):
AAAGCTAAAAAAGAATACATGAGATGATGGAGTCTTAAGAACCTTGTTACTACGATTAGAATTTC
TTGACATTGATTTAGTGACATTTGCATTACATATATCGCAT
Found at i:7772751 original size:18 final size:18
Alignment explanation
Indices: 7772728--7772783 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
7772718 TCATTCTTGT
7772728 GAATCTAAAAATCTTTAC
1 GAATCTAAAAATCTTTAC
* * **
7772746 GAATCTGAAAACCTTTGT
1 GAATCTAAAAATCTTTAC
* *
7772764 GAATCTAGAACT-TTTAC
1 GAATCTAAAAATCTTTAC
7772781 GAA
1 GAA
7772784 ACTCTGAATC
Statistics
Matches: 28, Mismatches: 10, Indels: 1
0.72 0.26 0.03
Matches are distributed among these distances:
17 6 0.21
18 22 0.79
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.32
Consensus pattern (18 bp):
GAATCTAAAAATCTTTAC
Found at i:7772826 original size:87 final size:87
Alignment explanation
Indices: 7772667--7772969 Score: 245
Period size: 87 Copynumber: 3.5 Consensus size: 87
7772657 GTTTGTTATG
* * ** * **
7772667 AAACTTTTATGAATCTAGAACCTTTGTGAAACTCAAAATCTTACGAACCTTTCATTCTTGTGAAT
1 AAACCTTTGTGAATCTAGAACCTTTACGAAACTCAAAATCTTACGAACATTTCATTCTTGCAAAT
* *
7772732 CTAAAAATCTTTACGAATCTGA
66 CTAAAAATCCTTACGAATCTAA
* **
7772754 AAACCTTTGTGAATCTAGAACTTTTACGAAACTCTGAATCTTACGAACATTTCATTCTTGCAAAT
1 AAACCTTTGTGAATCTAGAACCTTTACGAAACTCAAAATCTTACGAACATTTCATTCTTGCAAAT
* *
7772819 CTGAAAATCCTTATGAATCTAA
66 CTAAAAATCCTTACGAATCTAA
* * * ** ** * *
7772841 AAATCATTGTGAATCTA-AGACCTCTGTGAAACTTGAAATCTTACGAATC-TTCCATTCTT-AAG
1 AAACCTTTGTGAATCTAGA-ACCTTTACGAAACTCAAAATCTTACGAA-CATTTCATTCTTGCA-
* * * *
7772903 AATCTAAAAGTCCTTATGAAGCT-G
63 AATCTAAAAATCCTTACGAATCTAA
* *** * * *
7772927 AAACTTTTACAAATCTAGGACCTTTACAAAACTTAAAATCTTA
1 AAACCTTTGTGAATCTAGAACCTTTACGAAACTCAAAATCTTA
7772970 TGAATCTAAA
Statistics
Matches: 171, Mismatches: 41, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
86 32 0.19
87 138 0.81
88 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.34
Consensus pattern (87 bp):
AAACCTTTGTGAATCTAGAACCTTTACGAAACTCAAAATCTTACGAACATTTCATTCTTGCAAAT
CTAAAAATCCTTACGAATCTAA
Found at i:7772843 original size:18 final size:18
Alignment explanation
Indices: 7772816--7772858 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7772806 CATTCTTGCA
* *
7772816 AATCTGAAAATCCTTATG
1 AATCTAAAAATCATTATG
*
7772834 AATCTAAAAATCATTGTG
1 AATCTAAAAATCATTATG
7772852 AATCTAA
1 AATCTAA
7772859 GACCTCTGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (18 bp):
AATCTAAAAATCATTATG
Found at i:7773358 original size:65 final size:64
Alignment explanation
Indices: 7773208--7773368 Score: 170
Period size: 65 Copynumber: 2.5 Consensus size: 64
7773198 ATCTTAGTCA
* * *
7773208 TTTGATCTTAGCTCAGTCCAG---A-TTATTTTTTTGACCTATGGTTCAATCCCGATCACTCAT
1 TTTGATCTTAGCTCAGTCCAGATCATTTATTTTTTTGACCTATGGCTCAATCCCAATCACCCAT
** * * * *
7773268 TTTGATCTCGGCTTAATCCAAATCATTTCATTTTTTTGA-CTCGTGGCTCAATCCCAATCACCCA
1 TTTGATCTTAGCTCAGTCCAGATCATTT-ATTTTTTTGACCT-ATGGCTCAATCCCAATCACCCA
7773332 T
64 T
*
7773333 TTTGATCTTAGCTCAGTCTAGATCATTTTATTTTTT
1 TTTGATCTTAGCTCAGTCCAGATCA-TTTATTTTTT
7773369 GTTTCGTAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 9
0.77 0.15 0.09
Matches are distributed among these distances:
60 16 0.20
63 1 0.01
64 4 0.05
65 55 0.70
66 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.43
Consensus pattern (64 bp):
TTTGATCTTAGCTCAGTCCAGATCATTTATTTTTTTGACCTATGGCTCAATCCCAATCACCCAT
Found at i:7773694 original size:52 final size:51
Alignment explanation
Indices: 7773561--7773719 Score: 178
Period size: 51 Copynumber: 3.1 Consensus size: 51
7773551 TGAAATCAGG
* * *
7773561 TTAAAATGATGTTGAGAGATTTTTAGAATTTAATCCCAAAATCAATTCAAA
1 TTAAAATGATGTTGAGAGATTTTTGGGATTTAATTCCAAAATCAATTCAAA
* * ***
7773612 TTAAAATGATGTTGAGAGATTTTTGAGATTTAATTCCAGAATCAATTGGCA
1 TTAAAATGATGTTGAGAGATTTTTGGGATTTAATTCCAAAATCAATTCAAA
** * * *
7773663 TTAAAAATGATGAGGAGAGATTTATGGGATTTAATTTCATAATCAA-TCAAA
1 TT-AAAATGATGTTGAGAGATTTTTGGGATTTAATTCCAAAATCAATTCAAA
7773714 -TAAAAT
1 TTAAAAT
7773720 CATAGATTTA
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 5 0.06
50 1 0.01
51 47 0.52
52 37 0.41
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.35
Consensus pattern (51 bp):
TTAAAATGATGTTGAGAGATTTTTGGGATTTAATTCCAAAATCAATTCAAA
Found at i:7776481 original size:11 final size:11
Alignment explanation
Indices: 7776465--7776492 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7776455 AAGAAATTAG
7776465 AAAAAATGTGC
1 AAAAAATGTGC
7776476 AAAAAATGTGC
1 AAAAAATGTGC
7776487 AAAAAA
1 AAAAAA
7776493 AAAATAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (11 bp):
AAAAAATGTGC
Found at i:7776505 original size:16 final size:16
Alignment explanation
Indices: 7776486--7776527 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
7776476 AAAAAATGTG
7776486 CAAAAAAAAAATAAAA
1 CAAAAAAAAAATAAAA
*
7776502 CAAAAAATAAATAAAA
1 CAAAAAAAAAATAAAA
7776518 -AAGAAAAAAA
1 CAA-AAAAAAA
7776528 GAAGACTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 2 0.09
16 21 0.91
ACGTcount: A:0.86, C:0.05, G:0.02, T:0.07
Consensus pattern (16 bp):
CAAAAAAAAAATAAAA
Found at i:7776506 original size:12 final size:11
Alignment explanation
Indices: 7776487--7776527 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
7776477 AAAAATGTGC
7776487 AAAAAAAAAAT
1 AAAAAAAAAAT
7776498 AAAACAAAAAAT
1 AAAA-AAAAAAT
* *
7776510 AAATAAAAAAG
1 AAAAAAAAAAT
7776521 AAAAAAA
1 AAAAAAA
7776528 GAAGACTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 16 0.62
12 10 0.38
ACGTcount: A:0.88, C:0.02, G:0.02, T:0.07
Consensus pattern (11 bp):
AAAAAAAAAAT
Found at i:7777780 original size:87 final size:87
Alignment explanation
Indices: 7777650--7777825 Score: 246
Period size: 87 Copynumber: 2.0 Consensus size: 87
7777640 TTTGTGAATT
* * * *
7777650 TAGAACTTTTGTGAAACTCAAAATCTTGTGAACCTTTCATTTTTGCGAATCTGAAAGTCCTTGCG
1 TAGAACTTTTGTGAAACTCAAAATCTTGTGAACCTTTCATTTTTACAAATCTGAAAGTCCTTACA
7777715 AATCTA-AAAACCTTTACAAATC
66 AATCTATAAAA-CTTTACAAATC
* ** *
7777737 TAGAACTTTTGTGAAACTCAAAATCTTGTGAACGTTTTTTTTTTACAAATTTGAAAGTCCTTACA
1 TAGAACTTTTGTGAAACTCAAAATCTTGTGAACCTTTCATTTTTACAAATCTGAAAGTCCTTACA
* *
7777802 AATCTATAAAATTTTACGAATC
66 AATCTATAAAACTTTACAAATC
7777824 TA
1 TA
7777826 AGAGCTCTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
87 74 0.95
88 4 0.05
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (87 bp):
TAGAACTTTTGTGAAACTCAAAATCTTGTGAACCTTTCATTTTTACAAATCTGAAAGTCCTTACA
AATCTATAAAACTTTACAAATC
Found at i:7777840 original size:87 final size:87
Alignment explanation
Indices: 7777662--7777847 Score: 205
Period size: 87 Copynumber: 2.1 Consensus size: 87
7777652 GAACTTTTGT
* * * *
7777662 GAAACTCAAAATCTTGTGAACCTTTCATTTTTGCGAATCTGAAAGTCCTTGCGAATCTAAAAACC
1 GAAACTCAAAATCTTGTGAACCTTTCATTTTTACAAATCTGAAAGTCCTTACAAATCTAAAAACC
* **
7777727 TTTACAAATCTAGAACTTTTGT
66 TTTACAAATCTAGAACTTCTAA
* ** *
7777749 GAAACTCAAAATCTTGTGAACGTTTTTTTTTTACAAATTTGAAAGTCCTTACAAATCTATAAAA-
1 GAAACTCAAAATCTTGTGAACCTTTCATTTTTACAAATCTGAAAGTCCTTACAAATCTA-AAAAC
* * *
7777813 TTTTACGAATCTAAGAGC-TCTAA
65 CTTTACAAATCT-AGAACTTCTAA
*
7777836 GAAACTTAAAAT
1 GAAACTCAAAAT
7777848 TTTATGAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
87 74 0.90
88 8 0.10
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (87 bp):
GAAACTCAAAATCTTGTGAACCTTTCATTTTTACAAATCTGAAAGTCCTTACAAATCTAAAAACC
TTTACAAATCTAGAACTTCTAA
Found at i:7777965 original size:35 final size:36
Alignment explanation
Indices: 7777864--7777966 Score: 95
Period size: 35 Copynumber: 2.9 Consensus size: 36
7777854 AATATTTCAT
* * **
7777864 TCTTATGAATATGAAAGTCTTTAT-AAACTTGAAAC
1 TCTTACGAATCTGAAAACCTTTATGAAACTTGAAAC
* * * * *
7777899 TTTTGCGAATCT-AAGACCTCTACGAAACTTGAAA-
1 TCTTACGAATCTGAAAACCTTTATGAAACTTGAAAC
*
7777933 TCTTACGAATCTGAAAACCTTTATGAATCTTGAA
1 TCTTACGAATCTGAAAACCTTTATGAAACTTGAA
7777967 TGGCTAAATG
Statistics
Matches: 51, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
34 16 0.31
35 35 0.69
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.34
Consensus pattern (36 bp):
TCTTACGAATCTGAAAACCTTTATGAAACTTGAAAC
Found at i:7778452 original size:62 final size:60
Alignment explanation
Indices: 7778386--7778616 Score: 203
Period size: 62 Copynumber: 3.7 Consensus size: 60
7778376 AAAATGTTGA
* *
7778386 TTATTCAAGGTGTTTTTGACCAAAAATTACCTTAAATAATCCCTTAAAAAAATTAACATGGG
1 TTATTCAAGGTATTTTTGGCCAAAAA-TACCTTAAATAATCCCTTAAAAAAATTAA-ATGGG
* * * * * *
7778448 TTATTTAAGGCATTTTCTGGCCAAAAACACCTTGAATAATTCTTTATAAAAAATTAAATGAGG
1 TTATTCAAGGTATTTT-TGGCCAAAAATACCTTAAATAATCCCTTA-AAAAAATTAAATG-GG
* * ** * * * * *
7778511 TTATTTAAGGTGTTTCAGGCCAAAAATGCCTTAAATAATACCTTTATAAAAATTAGAGGGG
1 TTATTCAAGGTATTTTTGGCCAAAAATACCTTAAATAAT-CCCTTAAAAAAATTAAATGGG
* * *
7778572 ATTATTCAATGTATTTTT-GCCTTAAAATGCCTTAAATAATCCCTT
1 -TTATTCAAGGTATTTTTGGCC-AAAAATACCTTAAATAATCCCTT
7778617 TCAATTTTTA
Statistics
Matches: 137, Mismatches: 26, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
61 9 0.07
62 89 0.65
63 39 0.28
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.36
Consensus pattern (60 bp):
TTATTCAAGGTATTTTTGGCCAAAAATACCTTAAATAATCCCTTAAAAAAATTAAATGGG
Found at i:7780949 original size:18 final size:17
Alignment explanation
Indices: 7780926--7780968 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
7780916 TTTTATTTGC
7780926 TTTTATTATTGTACTAAT
1 TTTTATTATT-TACTAAT
* *
7780944 TTTTATTATTTATTTAT
1 TTTTATTATTTACTAAT
7780961 TTTTATTA
1 TTTTATTA
7780969 AGTAACTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTTATTATTTACTAAT
Found at i:7794051 original size:33 final size:34
Alignment explanation
Indices: 7794009--7794077 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 34
7793999 TAAATGAAAG
**
7794009 AAACGTTCAATGAACGGTAAG-ATTATTTATTTA
1 AAACGTTCAATGAACACTAAGTATTATTTATTTA
7794042 AAACGTTCAATGAACACTAAGTATTATTTATTTA
1 AAACGTTCAATGAACACTAAGTATTATTTATTTA
7794076 AA
1 AA
7794078 TTTGTTTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
33 19 0.58
34 14 0.42
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (34 bp):
AAACGTTCAATGAACACTAAGTATTATTTATTTA
Found at i:7795636 original size:18 final size:20
Alignment explanation
Indices: 7795607--7795643 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7795597 AAAATCAATA
7795607 TAAAATTTATGAT-TTTTTT
1 TAAAATTTATGATATTTTTT
7795626 TAAAA-TTATGATATTTTT
1 TAAAATTTATGATATTTTT
7795644 CTCACTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TAAAATTTATGATATTTTTT
Found at i:7801411 original size:16 final size:16
Alignment explanation
Indices: 7801390--7801422 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7801380 TCTAAGCGTG
7801390 TGTTCTGACCTGTAAA
1 TGTTCTGACCTGTAAA
7801406 TGTTCTGACCTGTAAA
1 TGTTCTGACCTGTAAA
7801422 T
1 T
7801423 ATGAACTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (16 bp):
TGTTCTGACCTGTAAA
Found at i:7803047 original size:61 final size:62
Alignment explanation
Indices: 7802982--7803148 Score: 151
Period size: 61 Copynumber: 2.7 Consensus size: 62
7802972 ATTTAAGTCG
* * * * *
7802982 TTTTTATCCAAAAATACTTTAAATATTTTATTTTAAAAAATA-AAAAAAATTATTTAAGGT-A
1 TTTTTATACAAAAAAACTTTAAATAATCTA-TTTAAAAAATATAAAAAAATTATTTAAGATAA
* * * * *
7803043 TTTTTGTATAAAAAAATTTTAAATAATCTATTTATAAAATATAAAAAGATTATTTAAGATAA
1 TTTTTATACAAAAAAACTTTAAATAATCTATTTAAAAAATATAAAAAAATTATTTAAGATAA
* * * *
7803105 TTTTTCGTATAAAAATA-TCTTAAATAATCTTTTTATAAAAATAT
1 TTTTT-ATACAAAAAAACT-TTAAATAATCTATTTA-AAAAATAT
7803149 TAACCTTAAA
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
60 10 0.11
61 39 0.44
62 7 0.08
63 25 0.28
64 7 0.08
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (62 bp):
TTTTTATACAAAAAAACTTTAAATAATCTATTTAAAAAATATAAAAAAATTATTTAAGATAA
Found at i:7803137 original size:28 final size:26
Alignment explanation
Indices: 7803096--7803148 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
7803086 AAAAGATTAT
7803096 TTAAGATAATTTTTCGTATAAAAATATC
1 TTAAGATAATTTTT--TATAAAAATATC
7803124 TTAA-ATAATCTTTTTATAAAAATAT
1 TTAAGATAAT-TTTTTATAAAAATAT
7803149 TAACCTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 11 0.46
27 5 0.21
28 8 0.33
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (26 bp):
TTAAGATAATTTTTTATAAAAATATC
Found at i:7803140 original size:63 final size:60
Alignment explanation
Indices: 7803012--7803144 Score: 185
Period size: 63 Copynumber: 2.2 Consensus size: 60
7803002 AAATATTTTA
* * *
7803012 TTTTAAAAAATAAAAAAAATTATTTAAGGTATTTTTGTATAAAAAAATTTTAAATAATCT
1 TTTTATAAAATAAAAAAAATTATTTAAGATATTTTTGTATAAAAAAATCTTAAATAATCT
* * *
7803072 ATTTATAAAATATAAAAAGATTATTTAAGATAATTTTTCGTATAAAAATATCTTAAATAATCT
1 TTTTATAAAATA-AAAAAAATTATTTAAGAT-ATTTTT-GTATAAAAAAATCTTAAATAATCT
7803135 TTTTATAAAA
1 TTTTATAAAA
7803145 ATATTAACCT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
60 10 0.16
61 16 0.25
62 6 0.10
63 31 0.49
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (60 bp):
TTTTATAAAATAAAAAAAATTATTTAAGATATTTTTGTATAAAAAAATCTTAAATAATCT
Found at i:7820408 original size:328 final size:329
Alignment explanation
Indices: 7819908--7820505 Score: 814
Period size: 328 Copynumber: 1.8 Consensus size: 329
7819898 CCTTCACAAG
* *
7819908 GGCCTTCAACTTGTGAGGGACAAAACTATGAGGTCAAAGGAGAGCCGAAGCAGATAATACCTCAC
1 GGCCTTCAACTTGTGAGGGACAAAACTATGAGGTCAAAGGAGAGCCGAAACAGACAATACCTCAC
* *
7819973 AAGTTTATGTTAATCGTGACAGTTAGATTGATCTAGGACACTAAATAAGTCCATGCCTGGGTCTT
66 AAGTTGATGTAAATCGTGACAGTTAGATTGATCTAGGACACTAAATAAGTCCATGCCTGGGTCTT
* * ** * * *
7820038 GGAGTCATACAAGCATCAAGTTTGAGTCTCGACCTGTAACAAGTGATATAAAAATAGGCCCGGGA
131 AGAGCCATACAAGCATCAAGTTTGAGTCTCGACCCATAACAAGTGATATAAAAATAAGCCAGAGA
** *
7820103 CTGTTCGACCTATGTCAAACGCCTTAAGGAGGGTAAGCATCACAAGATTGGGTGGAAG-AGAATG
196 CCATTCGACCTATGTCAAACACCTTAAGGAGGGTAAGCATCACAAGATTGGGT--AAGAAGAATG
7820167 TCTCGTCAAGCTTGAAAGGGCTAAGCATCACGAGGTTGGGTGTATTCGACCCAAGTGAAGCCACC
259 TCTCGTCAAGCTTGAAAGGGCTAAGCATCACGAGGTTGGGTGTATTCGACCCAAGTGAAGCCACC
7820232 TCGAGA
324 TCGAGA
*
7820238 GGCCTTCAACTTGTGAGGGACAAAA-TCGTGAGG-CTAAAGG-G-GCCGAAACAGACAATACCTC
1 GGCCTTCAACTTGTGAGGGACAAAACT-ATGAGGTC-AAAGGAGAGCCGAAACAGACAATACCTC
* * * * * * *
7820299 ATAAGTTGATGTAAATTGTGACAGTTAGGTTGATCT-GAGATACTAGATGAGTCTATGCACT-GG
64 ACAAGTTGATGTAAATCGTGACAGTTAGATTGATCTAG-GACACTAAATAAGTCCATGC-CTGGG
* *
7820362 TCTTAGAGCCATACAAGCCTCGAGTTTGAGTCTCGACCCATAACAAGTGATATAAAAATAAGCCA
127 TCTTAGAGCCATACAAGCATCAAGTTTGAGTCTCGACCCATAACAAGTGATATAAAAATAAGCCA
* * * * * * *
7820427 TATACCATTCGATCTATGTCAAGCACCTTAAGGAGGGTAAGCGTCACCAGATTGGGTTAGAAGAA
192 GAGACCATTCGACCTATGTCAAACACCTTAAGGAGGGTAAGCATCACAAGATTGGGTAAGAAGAA
7820492 TGTCTCGTCAAGCT
257 TGTCTCGTCAAGCT
7820506 CTTCTAGGGA
Statistics
Matches: 232, Mismatches: 31, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
326 2 0.01
327 19 0.08
328 171 0.74
329 5 0.02
330 35 0.15
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (329 bp):
GGCCTTCAACTTGTGAGGGACAAAACTATGAGGTCAAAGGAGAGCCGAAACAGACAATACCTCAC
AAGTTGATGTAAATCGTGACAGTTAGATTGATCTAGGACACTAAATAAGTCCATGCCTGGGTCTT
AGAGCCATACAAGCATCAAGTTTGAGTCTCGACCCATAACAAGTGATATAAAAATAAGCCAGAGA
CCATTCGACCTATGTCAAACACCTTAAGGAGGGTAAGCATCACAAGATTGGGTAAGAAGAATGTC
TCGTCAAGCTTGAAAGGGCTAAGCATCACGAGGTTGGGTGTATTCGACCCAAGTGAAGCCACCTC
GAGA
Found at i:7823516 original size:22 final size:22
Alignment explanation
Indices: 7823476--7823517 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7823466 TCTTTTCTTT
*
7823476 TTTTTTTTTTAAGCTAAGCTAA
1 TTTTTTTTTTAAGCAAAGCTAA
* *
7823498 TTTTTTTTTTCAGGAAAGCT
1 TTTTTTTTTTAAGCAAAGCT
7823518 TTAGTGTTGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.55
Consensus pattern (22 bp):
TTTTTTTTTTAAGCAAAGCTAA
Found at i:7823928 original size:17 final size:17
Alignment explanation
Indices: 7823900--7823942 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7823890 CCATTGGCCC
* *
7823900 TTTTTGTTTTTCTGT-T
1 TTTTTTTTTTTCTATCT
7823916 TTTATTTTTTTTCTATCT
1 TTT-TTTTTTTTCTATCT
7823934 TTTTTTTTT
1 TTTTTTTTT
7823943 GTATTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 16 0.70
18 4 0.17
ACGTcount: A:0.05, C:0.07, G:0.05, T:0.84
Consensus pattern (17 bp):
TTTTTTTTTTTCTATCT
Found at i:7829469 original size:4 final size:4
Alignment explanation
Indices: 7829460--7829485 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
7829450 TTTAAAATTA
7829460 TAAT TAAT TAAT TAAT TAAT TAAT TA
1 TAAT TAAT TAAT TAAT TAAT TAAT TA
7829486 TAGTAGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:7829883 original size:22 final size:22
Alignment explanation
Indices: 7829858--7829899 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7829848 CACATCATCG
7829858 TTAAAAATAATTTTAAAAAAAT
1 TTAAAAATAATTTTAAAAAAAT
*
7829880 TTAAAAATTATTTTAAAAAA
1 TTAAAAATAATTTTAAAAAA
7829900 CTAAAATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAAAATAATTTTAAAAAAAT
Found at i:7829884 original size:10 final size:12
Alignment explanation
Indices: 7829858--7829898 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
7829848 CACATCATCG
7829858 TTAAAAATAATT
1 TTAAAAATAATT
7829870 TTAAAAA-AA-T
1 TTAAAAATAATT
*
7829880 TTAAAAATTATT
1 TTAAAAATAATT
7829892 TTAAAAA
1 TTAAAAA
7829899 ACTAAAATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 8 0.31
11 3 0.12
12 15 0.58
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
TTAAAAATAATT
Found at i:7829897 original size:19 final size:18
Alignment explanation
Indices: 7829874--7829944 Score: 56
Period size: 18 Copynumber: 3.8 Consensus size: 18
7829864 ATAATTTTAA
7829874 AAAAATTTAAAAATTATTTT
1 AAAAA-TTAAAAATT-TTTT
*
7829894 AAAAAACT-AAAATGTTTTT
1 -AAAAATTAAAAAT-TTTTT
7829913 AAAAATTATAAAA-TTTTT
1 AAAAATTA-AAAATTTTTT
**
7829931 AAATTTTAAAAATT
1 AAAAATTAAAAATT
7829945 CAAAAAATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
17 4 0.10
18 18 0.43
19 9 0.21
20 6 0.14
21 5 0.12
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (18 bp):
AAAAATTAAAAATTTTTT
Found at i:7829958 original size:25 final size:25
Alignment explanation
Indices: 7829909--7829958 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
7829899 ACTAAAATGT
* *
7829909 TTTTAAAAATTATAAAATTTTTAAA
1 TTTTAAAAATTATAAAAATTCTAAA
7829934 TTTTAAAAATTCA-AAAAATTCTAAA
1 TTTTAAAAATT-ATAAAAATTCTAAA
7829959 AAATCTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (25 bp):
TTTTAAAAATTATAAAAATTCTAAA
Found at i:7829962 original size:19 final size:19
Alignment explanation
Indices: 7829938--7830031 Score: 57
Period size: 19 Copynumber: 4.8 Consensus size: 19
7829928 TTTAAATTTT
7829938 AAAAATTCAAAAAATTCTA
1 AAAAATTCAAAAAATTCTA
*
7829957 AAAAA-TCTAAAAATTATTTTA
1 AAAAATTC-AAAAA--ATTCTA
* * ** * *
7829978 AAAAACT-GAAATGTTTTT
1 AAAAATTCAAAAAATTCTA
**
7829996 AAAAATTTTAAAAATTCTA
1 AAAAATTCAAAAAATTCTA
7830015 AAAAATCTCAAAAAATT
1 AAAAAT-TCAAAAAATT
7830032 AGTAAAAATC
Statistics
Matches: 56, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
18 12 0.21
19 22 0.39
20 11 0.20
21 10 0.18
22 1 0.02
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAAATTCAAAAAATTCTA
Found at i:7830057 original size:20 final size:20
Alignment explanation
Indices: 7830015--7830058 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7830005 AAAAATTCTA
*
7830015 AAAAATCTCAAAAAATTAGT
1 AAAAATCTCAAAAAATTAAT
*
7830035 AAAAATC-CAAAAATTTTAAT
1 AAAAATCTCAAAAA-ATTAAT
7830055 AAAA
1 AAAA
7830059 GAATTATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAAATCTCAAAAAATTAAT
Found at i:7835276 original size:27 final size:27
Alignment explanation
Indices: 7835238--7835296 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
7835228 GCACACCAAA
7835238 AGTAAGGATATCAAAGATTTCTAAGTT
1 AGTAAGGATATCAAAGATTTCTAAGTT
*
7835265 AGTAAGGATATCGAAGATTTCTAAGTT
1 AGTAAGGATATCAAAGATTTCTAAGTT
*
7835292 GGTAA
1 AGTAA
7835297 TTTGTTGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (27 bp):
AGTAAGGATATCAAAGATTTCTAAGTT
Found at i:7836077 original size:31 final size:31
Alignment explanation
Indices: 7836040--7836105 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
7836030 GTGAATGCAT
*
7836040 AATTATTGTTG-AATTTATGAAATTAGTGTGG
1 AATTATTGTGGTAA-TTATGAAATTAGTGTGG
* * *
7836071 AATTATTGTGGTAATTGTGGAATTTGTGTGG
1 AATTATTGTGGTAATTATGAAATTAGTGTGG
7836102 AATT
1 AATT
7836106 TGTAGATTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (31 bp):
AATTATTGTGGTAATTATGAAATTAGTGTGG
Found at i:7836100 original size:20 final size:19
Alignment explanation
Indices: 7836066--7836105 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
7836056 ATGAAATTAG
7836066 TGTGGAATTATTGTGGTAAT
1 TGTGGAATTATTGTGG-AAT
7836086 TGTGGAATT-TGTGTGGAAT
1 TGTGGAATTAT-TGTGGAAT
7836105 T
1 T
7836106 TGTAGATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.45
Consensus pattern (19 bp):
TGTGGAATTATTGTGGAAT
Found at i:7837388 original size:2 final size:2
Alignment explanation
Indices: 7837381--7837424 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7837371 TTCTAGTTCT
7837381 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7837423 TA
1 TA
7837425 AGTTATCAGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7837494 original size:2 final size:2
Alignment explanation
Indices: 7837487--7837522 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7837477 TTCTATTCTT
7837487 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7837523 GATGCTACGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7841856 original size:4 final size:4
Alignment explanation
Indices: 7841847--7841871 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7841837 AGCTTCTGCT
7841847 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
7841872 ATATATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:7842003 original size:10 final size:12
Alignment explanation
Indices: 7841983--7842014 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
7841973 TATAATTATT
7841983 AAATTTATATAA
1 AAATTTATATAA
7841995 AAATTTATATAA
1 AAATTTATATAA
7842007 AAATTTAT
1 AAATTTAT
7842015 CATTTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
AAATTTATATAA
Found at i:7842831 original size:2 final size:2
Alignment explanation
Indices: 7842824--7842856 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
7842814 TAATCTAATC
7842824 AT AT AT AT AT AT AT AT AT AT -T AT A- AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7842857 GATACTTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7842868 original size:20 final size:18
Alignment explanation
Indices: 7842825--7842860 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7842815 AATCTAATCA
*
7842825 TATATATATATATATATAT
1 TATA-ATATATATAGATAT
7842844 TATAATATATATAGATA
1 TATAATATATATAGATA
7842861 CTTGATAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
TATAATATATATAGATAT
Found at i:7843270 original size:13 final size:13
Alignment explanation
Indices: 7843252--7843285 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7843242 TAATTTTCTA
7843252 ATAATTTAAATAT
1 ATAATTTAAATAT
*
7843265 ATAATTTAAATGT
1 ATAATTTAAATAT
7843278 ATATATTT
1 ATA-ATTT
7843286 TTATCTTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATAATTTAAATAT
Found at i:7844822 original size:17 final size:17
Alignment explanation
Indices: 7844798--7844832 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
7844788 TTATCTATCT
7844798 ATATATAATATAAAAATTA
1 ATATA-AAT-TAAAAATTA
7844817 ATATAAATTAAAAATT
1 ATATAAATTAAAAATT
7844833 TAAACTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATAAATTAAAAATTA
Found at i:7845435 original size:2 final size:2
Alignment explanation
Indices: 7845430--7845470 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7845420 TGTGTGTGTC
7845430 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7845471 TAAAATAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7846543 original size:32 final size:33
Alignment explanation
Indices: 7846507--7846568 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
7846497 AATCTTATCT
7846507 AATCAATTACT-AATGTTTCAAAATTATAATCC
1 AATCAATTACTCAATGTTTCAAAATTATAATCC
*
7846539 AATCAATTATTCAATGTTTCAAAATTATAA
1 AATCAATTACTCAATGTTTCAAAATTATAA
7846569 AGATTAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 10 0.36
33 18 0.64
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (33 bp):
AATCAATTACTCAATGTTTCAAAATTATAATCC
Found at i:7846582 original size:33 final size:33
Alignment explanation
Indices: 7846518--7846585 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
7846508 ATCAATTACT
* *
7846518 AATGTTTCAAAATTATAATCCAATCAATTATTC
1 AATGTTTCAAAATTATAATACAATAAATTATTC
* *
7846551 AATGTTTCAAAATTATAA-AGATTAAATTTATTC
1 AATGTTTCAAAATTATAATACAATAAA-TTATTC
7846584 AA
1 AA
7846586 GCCTTTTATC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 4 0.13
33 26 0.87
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (33 bp):
AATGTTTCAAAATTATAATACAATAAATTATTC
Found at i:7846765 original size:23 final size:23
Alignment explanation
Indices: 7846739--7846787 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
7846729 TTATCTATGA
7846739 ATCATAATTATCGTCCAAGAATT
1 ATCATAATTATCGTCCAAGAATT
7846762 ATCATAATTATCGTCCAAGAATT
1 ATCATAATTATCGTCCAAGAATT
7846785 ATC
1 ATC
7846788 CTATAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (23 bp):
ATCATAATTATCGTCCAAGAATT
Found at i:7853119 original size:20 final size:20
Alignment explanation
Indices: 7853091--7853139 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
7853081 ATAAAACAAA
*
7853091 AAAACAAAAAATTA-AAAAT
1 AAAATAAAAAATTAGAAAAT
*
7853110 AAAATAAAAAATTAGAAACT
1 AAAATAAAAAATTAGAAAAT
7853130 AAAATAAAAA
1 AAAATAAAAA
7853140 TCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAATAAAAAATTAGAAAAT
Found at i:7854157 original size:22 final size:22
Alignment explanation
Indices: 7854132--7854173 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7854122 TCTAATTTCC
**
7854132 CTTTTTTTTTTTGTTTTGACCT
1 CTTTTTTTTTTACTTTTGACCT
7854154 CTTTTTTTTTTACTTTTGAC
1 CTTTTTTTTTTACTTTTGAC
7854174 TTTTGATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.14, G:0.07, T:0.71
Consensus pattern (22 bp):
CTTTTTTTTTTACTTTTGACCT
Found at i:7854258 original size:30 final size:30
Alignment explanation
Indices: 7854222--7854278 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7854212 TGAAAACTAA
*
7854222 AACCAAAATCCAAATTAAGACTAAAATCAT
1 AACCAAAATCAAAATTAAGACTAAAATCAT
* *
7854252 AACCAAAATTAAAATTAAGATTAAAAT
1 AACCAAAATCAAAATTAAGACTAAAAT
7854279 TTTCAGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.60, C:0.14, G:0.04, T:0.23
Consensus pattern (30 bp):
AACCAAAATCAAAATTAAGACTAAAATCAT
Found at i:7855301 original size:12 final size:12
Alignment explanation
Indices: 7855284--7855308 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7855274 TTAAAAGTTT
7855284 TGAAGATTTATC
1 TGAAGATTTATC
7855296 TGAAGATTTATC
1 TGAAGATTTATC
7855308 T
1 T
7855309 AAAGGTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TGAAGATTTATC
Found at i:7856391 original size:23 final size:23
Alignment explanation
Indices: 7856333--7856392 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
7856323 TATTAATTGT
7856333 TTTATTAAATTTTTTTATTTTTAA
1 TTTATTAAA-TTTTTTATTTTTAA
*
7856357 TTT-TGAAATTTTTT-TTTTT-A
1 TTTATTAAATTTTTTATTTTTAA
*
7856377 TTGTATTAAAGTTTTT
1 TT-TATTAAATTTTTT
7856393 CTATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 3 0.10
21 6 0.19
22 15 0.48
23 4 0.13
24 3 0.10
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (23 bp):
TTTATTAAATTTTTTATTTTTAA
Found at i:7856599 original size:23 final size:22
Alignment explanation
Indices: 7856534--7856604 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 22
7856524 ATTACTTATA
*
7856534 TTTTTATTATATTAATAAATTTT
1 TTTTTATTATATTAA-AATTTTT
* **
7856557 TATTTATTACTAACATAAATTTTT
1 TTTTTATTA-TATTA-AAATTTTT
7856581 TTTTTATTATATTGAAAATTTTT
1 TTTTTATTATATT-AAAATTTTT
7856604 T
1 T
7856605 ATAAATACTC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
23 19 0.50
24 18 0.47
25 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (22 bp):
TTTTTATTATATTAAAATTTTT
Found at i:7857828 original size:11 final size:11
Alignment explanation
Indices: 7857812--7857844 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
7857802 AATAAAAGAG
7857812 GAAAGAAAAAA
1 GAAAGAAAAAA
*
7857823 GAAAGAAAGAA
1 GAAAGAAAAAA
7857834 GAAAGAAAAAA
1 GAAAGAAAAAA
7857845 AATGAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
GAAAGAAAAAA
Found at i:7857867 original size:3 final size:3
Alignment explanation
Indices: 7857861--7857895 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7857851 AAAAAAATTA
7857861 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7857896 ATGATGTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Done.