Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 39 of 129
Found at i:8023040 original size:6 final size:6
Alignment explanation
Indices: 8023030--8023069 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
8023020 AAAGATAAAG
*
8023030 AATATA TATATA TAATATA AATATA AATATAA AATATA AA
1 AATATA AATATA -AATATA AATATA AATAT-A AATATA AA
8023070 ATACAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 19 0.63
7 11 0.37
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
AATATA
Found at i:8023054 original size:19 final size:19
Alignment explanation
Indices: 8023030--8023069 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8023020 AAAGATAAAG
* *
8023030 AATATATATATATAATATA
1 AATATAAATATAAAATATA
8023049 AATATAAATATAAAATATA
1 AATATAAATATAAAATATA
8023068 AA
1 AA
8023070 ATACAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AATATAAATATAAAATATA
Found at i:8023064 original size:13 final size:13
Alignment explanation
Indices: 8023030--8023072 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
8023020 AAAGATAAAG
* *
8023030 AATATATATATAT
1 AATATAAATATAA
8023043 AATATAAATAT-A
1 AATATAAATATAA
8023055 AATATAAAATATAA
1 AATAT-AAATATAA
8023069 AATA
1 AATA
8023073 CAAAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 5 0.19
13 16 0.62
14 5 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AATATAAATATAA
Found at i:8023077 original size:7 final size:7
Alignment explanation
Indices: 8023037--8023081 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
8023027 AAGAATATAT
*
8023037 ATATATA
1 ATATAAA
8023044 ATAT-AA
1 ATATAAA
8023050 ATAT-AA
1 ATATAAA
8023056 ATATAAA
1 ATATAAA
8023063 ATATAAA
1 ATATAAA
*
8023070 ATACAAA
1 ATATAAA
8023077 A-ATAA
1 ATATAA
8023082 TAAAAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
6 14 0.41
7 20 0.59
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (7 bp):
ATATAAA
Found at i:8023081 original size:26 final size:24
Alignment explanation
Indices: 8023037--8023093 Score: 60
Period size: 26 Copynumber: 2.3 Consensus size: 24
8023027 AAGAATATAT
* * *
8023037 ATATATAATATAAATATAAATATAAA
1 ATATAAAATACAAAAAT-AATA-AAA
8023063 ATATAAAATACAAAAATAATAAAA
1 ATATAAAATACAAAAATAATAAAA
*
8023087 AAATAAA
1 ATATAAA
8023094 GCAGACCGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 9 0.33
25 4 0.15
26 14 0.52
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (24 bp):
ATATAAAATACAAAAATAATAAAA
Found at i:8023086 original size:64 final size:61
Alignment explanation
Indices: 8022945--8023094 Score: 139
Period size: 65 Copynumber: 2.4 Consensus size: 61
8022935 ATAAATATTA
8022945 ACAAAAATAATAATAATAATAAAGATATATATATTAATAAATAGTAATAATAAATAAGTAAAT
1 ACAAAAATAATAA-AATAATAAAGATATATATATTAATAAATAGTAATAATAAATAAG-AAAT
* * *
8023008 A-AGAAATACTTAAAA-GATAAAGAATATATATATATAATATAAATA-TAA-ATATAAAATATA-
1 ACAAAAATA-ATAAAATAATAAAG-ATATATATAT-T-A-ATAAATAGTAATA-AT-AAATA-AG
8023068 AAAT
58 AAAT
*
8023072 ACAAAAATAATAAAAAAATAAAG
1 ACAAAAATAATAAAATAATAAAG
8023095 CAGACCGACC
Statistics
Matches: 71, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
61 6 0.08
62 18 0.25
63 6 0.08
64 16 0.23
65 24 0.34
66 1 0.01
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (61 bp):
ACAAAAATAATAAAATAATAAAGATATATATATTAATAAATAGTAATAATAAATAAGAAAT
Found at i:8023169 original size:3 final size:3
Alignment explanation
Indices: 8023161--8023311 Score: 58
Period size: 3 Copynumber: 45.7 Consensus size: 3
8023151 TCTACAATTG
* *
8023161 TTA TTA TTA TTA TTTA TTA ATA -TA TATA TT- TT- TTA TCTA TTA ATA
1 TTA TTA TTA TTA -TTA TTA TTA TTA T-TA TTA TTA TTA T-TA TTA TTA
* * *
8023206 TATA TTA TTA TTTA TCTA TTAA TGTA -TA TAAA TTT TTA TTA TTAA CTA
1 T-TA TTA TTA -TTA T-TA TT-A T-TA TTA T-TA TTA TTA TTA TT-A TTA
*
8023254 TTA TCTA TTA TTTA TCTA TTA GTA TATA TATA TTTA TTA TTTA TCTA TTA
1 TTA T-TA TTA -TTA T-TA TTA TTA T-TA T-TA -TTA TTA -TTA T-TA TTA
8023304 TTA TTA TT
1 TTA TTA TT
8023312 TTTTTTGGCT
Statistics
Matches: 117, Mismatches: 11, Indels: 40
0.70 0.07 0.24
Matches are distributed among these distances:
2 8 0.07
3 59 0.50
4 48 0.41
5 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:8023244 original size:28 final size:24
Alignment explanation
Indices: 8023162--8023312 Score: 147
Period size: 24 Copynumber: 6.5 Consensus size: 24
8023152 CTACAATTGT
*
8023162 TATTATTA-TTATTTATTAATATA
1 TATTATTATTTATCTATTAATATA
*
8023185 TA-TATTTTTTATCTATTAATATA
1 TATTATTATTTATCTATTAATATA
*
8023208 TATTATTATTTATCTATTAATGTA
1 TATTATTATTTATCTATTAATATA
*
8023232 TATAAATT-TTTAT-TATTAACTAT-
1 TAT-TATTATTTATCTATTAA-TATA
*
8023255 TATCTATTATTTATCTATTAGTATA
1 TAT-TATTATTTATCTATTAATATA
* *
8023280 TA-TA-TATTTAT-TATTTATCTA
1 TATTATTATTTATCTATTAATATA
8023301 TTATTATTATTT
1 -TATTATTATTT
8023313 TTTTTGGCTG
Statistics
Matches: 106, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.07
22 13 0.12
23 34 0.32
24 42 0.40
25 10 0.09
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (24 bp):
TATTATTATTTATCTATTAATATA
Found at i:8024036 original size:3 final size:3
Alignment explanation
Indices: 8024030--8024154 Score: 70
Period size: 3 Copynumber: 42.7 Consensus size: 3
8024020 TTTTTCTTAT
*
8024030 TTA TTA TTA TTA TTA TT- TCTT TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * *
8024075 TT- TGT- TTA TTTA TTTA TTA -GA TTA GAA TTA TTTA ATA TTTC TTA
1 TTA T-TA TTA -TTA -TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA
*
8024119 TT- TTA TT- TTA TT- TTA TTT TTA TT- TTA TT- TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8024155 TTTTTAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
2 14 0.15
3 70 0.73
4 12 0.12
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:8024062 original size:24 final size:23
Alignment explanation
Indices: 8024022--8024154 Score: 88
Period size: 21 Copynumber: 6.0 Consensus size: 23
8024012 AAAGGTTTTT
8024022 TTTCTTATTTATTATTATTATTA
1 TTTCTTATTTATTATTATTATTA
8024045 TTTC-T-TTTATTATTATTATTA
1 TTTCTTATTTATTATTATTATTA
*
8024066 -TTATTA-TTATT-TGT-TTATTTA
1 TTTCTTATTTATTAT-TATTA-TTA
* * ** *
8024087 TTTATTAGATTAGAATTATTTAATA
1 TTTCTTA-TTTATTATTA-TTATTA
8024112 TTTCTTATTTTATT-TTATT-TTA
1 TTTCTTA-TTTATTATTATTATTA
8024134 TTT-TTATTTTATT-TTATTATT
1 TTTCTTA-TTTATTATTATTATT
8024155 TTTTTAAATG
Statistics
Matches: 89, Mismatches: 10, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
20 6 0.07
21 41 0.46
22 14 0.16
23 6 0.07
24 7 0.08
25 12 0.13
26 3 0.03
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTCTTATTTATTATTATTATTA
Found at i:8024072 original size:33 final size:33
Alignment explanation
Indices: 8024030--8024154 Score: 95
Period size: 33 Copynumber: 3.9 Consensus size: 33
8024020 TTTTTCTTAT
8024030 TTATTATTATTATTATTTCTTTTATTATTATTA
1 TTATTATTATTATTATTTCTTTTATTATTATTA
*
8024063 TTATTATTATTATT-TGTT-TATTTATTTATTA-GA
1 TTATTATTATTATTAT-TTCT-TTTA-TTATTATTA
** *
8024096 TTAGAATTATTTAATATTTC--TTATT-TTATT-
1 TTATTATTA-TTATTATTTCTTTTATTATTATTA
* *
8024126 TTATT-TTATTTTTATTTTATTTTATTATT
1 TTATTATTATTATTA-TTTCTTTTATTATT
8024155 TTTTTAAATG
Statistics
Matches: 71, Mismatches: 10, Indels: 23
0.68 0.10 0.22
Matches are distributed among these distances:
28 4 0.06
29 6 0.08
30 6 0.08
31 7 0.10
32 7 0.10
33 28 0.39
34 12 0.17
35 1 0.01
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (33 bp):
TTATTATTATTATTATTTCTTTTATTATTATTA
Found at i:8024126 original size:5 final size:5
Alignment explanation
Indices: 8024116--8024151 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
8024106 TTAATATTTC
8024116 TTATT TTATT TTATT TTATTT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTA-TT TTATT TTATT TTATT
8024152 ATTTTTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:8024158 original size:21 final size:21
Alignment explanation
Indices: 8024110--8024160 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
8024100 AATTATTTAA
8024110 TATTTCTTATTTTATTTTATTT
1 TATTT-TTATTTTATTTTATTT
8024132 TATTTTTATTTTATTTTATTAT
1 TATTTTTATTTTATTTTATT-T
8024154 T-TTTTTA
1 TATTTTTA
8024161 AATGATTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (21 bp):
TATTTTTATTTTATTTTATTT
Found at i:8024159 original size:16 final size:16
Alignment explanation
Indices: 8024119--8024160 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
8024109 ATATTTCTTA
8024119 TTTTATTTTATTTTAT
1 TTTTATTTTATTTTAT
8024135 TTTTATTTTATTTTAT
1 TTTTATTTTATTTTAT
8024151 TATTT-TTTTA
1 T-TTTATTTTA
8024161 AATGATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTATTTTATTTTAT
Found at i:8039418 original size:22 final size:21
Alignment explanation
Indices: 8039374--8039427 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
8039364 TAATTTTTAT
8039374 ATATTTATT--TTAAAAAATA
1 ATATTTATTAATTAAAAAATA
*
8039393 ATATTTATTAATTAATAAAATG
1 ATATTTATTAATTAA-AAAATA
8039415 ATA-TTATTTAATT
1 ATATTTA-TTAATT
8039428 TATTAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 9 0.30
21 7 0.23
22 14 0.47
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
ATATTTATTAATTAAAAAATA
Found at i:8039572 original size:15 final size:15
Alignment explanation
Indices: 8039542--8039583 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8039532 TTAAATAAAA
8039542 AAAAATATAA-AATTT
1 AAAAATA-AATAATTT
* *
8039557 ATATATAAATAATTT
1 AAAAATAAATAATTT
8039572 AAAAATAAATAA
1 AAAAATAAATAA
8039584 AATAAATTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 2 0.09
15 20 0.91
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAAATAAATAATTT
Found at i:8041763 original size:22 final size:23
Alignment explanation
Indices: 8041718--8041763 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
8041708 ATTACCAACA
* *
8041718 TTTTTTATAGGATTAGCAACAATT
1 TTTTTTATA-GATTAGAAAAAATT
8041742 TTTTTTATA-ATTAGAAAAAATT
1 TTTTTTATAGATTAGAAAAAATT
8041764 ATTCCTACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
24 9 0.45
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (23 bp):
TTTTTTATAGATTAGAAAAAATT
Found at i:8053036 original size:33 final size:32
Alignment explanation
Indices: 8052995--8053056 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
8052985 GCTCATGACT
*
8052995 AAATTTAATAATTTTTATATTTATATTATGTA
1 AAATTTAATAATTTATATATTTATATTATGTA
* * *
8053027 AAATATTAATTATTTATGTATTTATTTTAT
1 AAAT-TTAATAATTTATATATTTATATTAT
8053057 ATTTTATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 4 0.16
33 21 0.84
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (32 bp):
AAATTTAATAATTTATATATTTATATTATGTA
Found at i:8053179 original size:8 final size:8
Alignment explanation
Indices: 8053153--8053193 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
8053143 TTTATAAAAA
8053153 TTTATATT
1 TTTATATT
*
8053161 TTAATATT
1 TTTATATT
8053169 TTTATATTTT
1 TTTATA--TT
8053179 TTTATATT
1 TTTATATT
8053187 TTTATAT
1 TTTATAT
8053194 CATATTATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 21 0.72
10 8 0.28
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTATATT
Found at i:8053180 original size:18 final size:18
Alignment explanation
Indices: 8053159--8053193 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8053149 AAAATTTATA
8053159 TTTTAATATTTTTATATT
1 TTTTAATATTTTTATATT
*
8053177 TTTTTATATTTTTATAT
1 TTTTAATATTTTTATAT
8053194 CATATTATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTAATATTTTTATATT
Found at i:8053857 original size:23 final size:23
Alignment explanation
Indices: 8053826--8053879 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
8053816 TTTTATACCT
* *
8053826 AAATTTATTTAAATATTAT-TAA
1 AAATTTATTAAAATAATATATAA
8053848 AAATTATATTAAAATAATATATAA
1 AAATT-TATTAAAATAATATATAA
8053872 AAGATTTA
1 AA-ATTTA
8053880 AAATTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 5 0.19
23 12 0.44
24 7 0.26
25 3 0.11
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
AAATTTATTAAAATAATATATAA
Found at i:8065351 original size:51 final size:51
Alignment explanation
Indices: 8065277--8065380 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
8065267 AAACGACAAA
8065277 TTTTGAGTTGTTCCATTCTGCTCTCAAGCTCTTCAATCATGTTGCTGAGAT
1 TTTTGAGTTGTTCCATTCTGCTCTCAAGCTCTTCAATCATGTTGCTGAGAT
*
8065328 TTTTGAGTTGTTCCATTCTGCTCTCGAGCTCTTCAATCATGTTGCTGAGAT
1 TTTTGAGTTGTTCCATTCTGCTCTCAAGCTCTTCAATCATGTTGCTGAGAT
8065379 TT
1 TT
8065381 CTTTCTTTCT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.44
Consensus pattern (51 bp):
TTTTGAGTTGTTCCATTCTGCTCTCAAGCTCTTCAATCATGTTGCTGAGAT
Found at i:8073690 original size:34 final size:34
Alignment explanation
Indices: 8073628--8073716 Score: 128
Period size: 34 Copynumber: 2.7 Consensus size: 34
8073618 GATATTCATC
* *
8073628 ATTTTCAAGAAATC--AACATTTCTCAAAAATGA
1 ATTTTCGAGAAATCATAACACTTCTCAAAAATGA
*
8073660 ATTTTCGAGAAATCATAACACTTCTCAAAAATGC
1 ATTTTCGAGAAATCATAACACTTCTCAAAAATGA
*
8073694 ATTTTTGAGAAATCATAACACTT
1 ATTTTCGAGAAATCATAACACTT
8073717 TTTGGAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 13 0.25
34 38 0.75
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.33
Consensus pattern (34 bp):
ATTTTCGAGAAATCATAACACTTCTCAAAAATGA
Found at i:8076971 original size:21 final size:22
Alignment explanation
Indices: 8076947--8076987 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8076937 AAATCATACA
*
8076947 TAATACATAGATA-ATAAATTC
1 TAATACATAAATATATAAATTC
*
8076968 TAATATATAAATATATAAAT
1 TAATACATAAATATATAAAT
8076988 ATCAAACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (22 bp):
TAATACATAAATATATAAATTC
Found at i:8080257 original size:29 final size:28
Alignment explanation
Indices: 8080225--8080296 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 28
8080215 ATAGTGAATA
* **
8080225 TTAAAATTTAAAATT-ATTTAATGTTGAT
1 TTAAAATTTAAAATTAATTAAAT-TAAAT
*
8080253 TT-TAATTATATAAATTAATTAAATTAAAT
1 TTAAAATT-TA-AAATTAATTAAATTAAAT
8080282 TTAAAATTTAAAATT
1 TTAAAATTTAAAATT
8080297 CATGAGCTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
27 4 0.11
28 9 0.26
29 12 0.34
30 10 0.29
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (28 bp):
TTAAAATTTAAAATTAATTAAATTAAAT
Found at i:8082576 original size:19 final size:18
Alignment explanation
Indices: 8082534--8082578 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
8082524 TATATATACA
8082534 TTATTTTTATTATATGTT
1 TTATTTTTATTATATGTT
* * *
8082552 TCATTTTTAATTATTTTTT
1 TTATTTTT-ATTATATGTT
8082571 TTATTTTT
1 TTATTTTT
8082579 TAAAAATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (18 bp):
TTATTTTTATTATATGTT
Found at i:8088264 original size:3 final size:3
Alignment explanation
Indices: 8088258--8088296 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
8088248 TTTTTCATGA
*
8088258 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT T-T TA- TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8088297 ATAACTCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8088694 original size:3 final size:3
Alignment explanation
Indices: 8088679--8088726 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
8088669 AATGTAAAGC
*
8088679 AAT AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8088727 TGATATTTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8095293 original size:18 final size:17
Alignment explanation
Indices: 8095272--8095305 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8095262 TTTAAATAAA
8095272 ATTTATTATTTTATTAAT
1 ATTTATTA-TTTATTAAT
*
8095290 ATTTTTTATTTATTAA
1 ATTTATTATTTATTAA
8095306 CAAAATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTATTATTTATTAAT
Found at i:8095442 original size:19 final size:19
Alignment explanation
Indices: 8095380--8095444 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
8095370 ATTTATTAAT
*
8095380 ATTTTTTATTTATTAACAA
1 ATTTTATATTTATTAACAA
* * * *
8095399 AATTTATA-TAATAAATAA
1 ATTTTATATTTATTAACAA
*
8095417 ATCTTATATTTATTAACAA
1 ATTTTATATTTATTAACAA
8095436 ATTTTATAT
1 ATTTTATAT
8095445 AACAAATAAT
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
18 13 0.38
19 21 0.62
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTTATATTTATTAACAA
Found at i:8095467 original size:36 final size:37
Alignment explanation
Indices: 8095390--8095476 Score: 106
Period size: 37 Copynumber: 2.4 Consensus size: 37
8095380 ATTTTTTATT
* **
8095390 TATTAACAAAATTTATATAATAAATAAATCTTATATT
1 TATTAACAAAATTTATATAACAAATAAATCTTATAAA
* *
8095427 TATTAACAAATTTTATATAACAAAT-AATTTTATAAA
1 TATTAACAAAATTTATATAACAAATAAATCTTATAAA
*
8095463 TATTAA-ATAATTTA
1 TATTAACAAAATTTA
8095477 AATTTTTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 6 0.14
36 14 0.33
37 23 0.53
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (37 bp):
TATTAACAAAATTTATATAACAAATAAATCTTATAAA
Found at i:8095468 original size:90 final size:89
Alignment explanation
Indices: 8095282--8095467 Score: 257
Period size: 90 Copynumber: 2.0 Consensus size: 89
8095272 ATTTATTATT
8095282 TTATTAATATTTTTTATTTATTAACAAAATTTATATAATAAATAAATCTTATTATAATAAAAATT
1 TTATTAATATTTTTTATTTATTAACAAAATTTATATAATAAATAAATCTTATTATAATAAAAATT
** **
8095347 TTAAATTATTTAATATTTATAAAA
66 TTAAAACAAATAATATTTATAAAA
* *
8095371 TTTATTAATATTTTTTATTTATTAACAAAATTTATATAATAAATAAATCTTATATTTATTAACAA
1 -TTATTAATATTTTTTATTTATTAACAAAATTTATATAATAAATAAATCTTAT-TATAATAA-AA
8095436 ATTTTATATAACAAATAAT-TTTATAAATA
63 ATTTTA-A-AACAAATAATATTTATAAA-A
8095465 TTA
1 TTA
8095468 AATAATTTAA
Statistics
Matches: 85, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
90 52 0.61
91 6 0.07
92 8 0.09
93 12 0.14
94 7 0.08
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (89 bp):
TTATTAATATTTTTTATTTATTAACAAAATTTATATAATAAATAAATCTTATTATAATAAAAATT
TTAAAACAAATAATATTTATAAAA
Found at i:8100527 original size:7 final size:7
Alignment explanation
Indices: 8100515--8100559 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
8100505 GAGAGAGACC
*
8100515 AAAGCCG
1 AAAGCCA
8100522 AAAGCCA
1 AAAGCCA
8100529 AAAG-C-
1 AAAGCCA
8100534 AAAGCCA
1 AAAGCCA
8100541 AAAGCCA
1 AAAGCCA
*
8100548 AACGCCA
1 AAAGCCA
8100555 AAAGC
1 AAAGC
8100560 AATGGGATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
5 4 0.12
6 2 0.06
7 27 0.82
ACGTcount: A:0.53, C:0.29, G:0.18, T:0.00
Consensus pattern (7 bp):
AAAGCCA
Found at i:8100539 original size:12 final size:12
Alignment explanation
Indices: 8100522--8100561 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
8100512 ACCAAAGCCG
8100522 AAAGCCAAAAGC
1 AAAGCCAAAAGC
8100534 AAAGCCAAAAGCC
1 AAAGCCAAAAG-C
8100547 AAACGCCAAAAGC
1 AAA-GCCAAAAGC
8100560 AA
1 AA
8100562 TGGGATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.42
13 7 0.27
14 8 0.31
ACGTcount: A:0.57, C:0.28, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAGCCAAAAGC
Found at i:8101606 original size:26 final size:26
Alignment explanation
Indices: 8101577--8101629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8101567 ATGAAAGGAT
*
8101577 AACTTATTTTATTGTTACGATAAATA
1 AACTTATTTTATTGCTACGATAAATA
*
8101603 AACTTATTTTATTGCTATGATAAATA
1 AACTTATTTTATTGCTACGATAAATA
8101629 A
1 A
8101630 TTTTTTGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.45
Consensus pattern (26 bp):
AACTTATTTTATTGCTACGATAAATA
Found at i:8102074 original size:2 final size:2
Alignment explanation
Indices: 8102067--8102105 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8102057 ACATGGCCAA
8102067 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8102106 ATCACATGAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8103088 original size:3 final size:3
Alignment explanation
Indices: 8103080--8103121 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8103070 TGCTGAAATA
8103080 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8103122 ACACCTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8109213 original size:3 final size:3
Alignment explanation
Indices: 8109205--8109252 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
8109195 ACATATTACA
8109205 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8109253 TATTATTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8109257 original size:3 final size:3
Alignment explanation
Indices: 8109251--8109302 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
8109241 AATAATAATA
8109251 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8109299 ATT A
1 ATT A
8109303 CTACTACTAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8114404 original size:2 final size:2
Alignment explanation
Indices: 8114397--8114435 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8114387 GCTAATATTA
8114397 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8114436 CACACGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8120094 original size:16 final size:18
Alignment explanation
Indices: 8120075--8120112 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
8120065 AAAAAAATGA
8120075 TATTTTAAAAAT-TTTT-
1 TATTTTAAAAATATTTTG
8120091 TATTTTAAAAATATTTTG
1 TATTTTAAAAATATTTTG
8120109 TATT
1 TATT
8120113 CAAATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.60
17 4 0.20
18 4 0.20
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TATTTTAAAAATATTTTG
Found at i:8120584 original size:17 final size:17
Alignment explanation
Indices: 8120550--8120588 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
8120540 TATTTTTAGC
8120550 ATTTATTTTTGAAAATT
1 ATTTATTTTTGAAAATT
*
8120567 ATTT-TTTTTGAATGATT
1 ATTTATTTTTGAA-AATT
8120584 ATTTA
1 ATTTA
8120589 AGGTGTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (17 bp):
ATTTATTTTTGAAAATT
Found at i:8121105 original size:13 final size:13
Alignment explanation
Indices: 8121071--8121110 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
8121061 ATTTTTTCTC
8121071 AAAATTAAATTATTT
1 AAAATTAAA-TA-TT
*
8121086 TAAATTAAATATT
1 AAAATTAAATATT
8121099 AAAATTAAATAT
1 AAAATTAAATAT
8121111 CTAATAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 13 0.57
14 2 0.09
15 8 0.35
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
AAAATTAAATATT
Found at i:8121130 original size:28 final size:29
Alignment explanation
Indices: 8121069--8121130 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
8121059 TCATTTTTTC
* * *
8121069 TCAAAATTAAATTATTTTAAATTAAATAT
1 TCAAAATTAAATTATCTAAAATAAAATAT
8121098 T-AAAATTAAA-TATCTAATAATAAAAT-T
1 TCAAAATTAAATTATCTAA-AATAAAATAT
8121125 TCAAAA
1 TCAAAA
8121131 AAAAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 7 0.25
28 20 0.71
29 1 0.04
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (29 bp):
TCAAAATTAAATTATCTAAAATAAAATAT
Found at i:8130106 original size:9 final size:9
Alignment explanation
Indices: 8130092--8130138 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
8130082 TTCCAGGTTT
8130092 TTTTTTTTA
1 TTTTTTTTA
8130101 TTTTTTTTA
1 TTTTTTTTA
* *
8130110 TATATTTTA
1 TTTTTTTTA
*
8130119 -TTTATTTA
1 TTTTTTTTA
8130127 TTTTTTATTA
1 TTTTTT-TTA
8130137 TT
1 TT
8130139 AGATTAGGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
8 5 0.17
9 20 0.67
10 5 0.17
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:8130106 original size:11 final size:11
Alignment explanation
Indices: 8130090--8130248 Score: 59
Period size: 12 Copynumber: 13.3 Consensus size: 11
8130080 CATTCCAGGT
8130090 TTTTTTTTTTA
1 TTTTTTTTTTA
8130101 TTTTTTTTATATA
1 TTTTTTTT-T-TA
8130114 TTTTATTTATTTA
1 TTTT-TTT-TTTA
8130127 TTTTTTATTATTA
1 TTTTTT-TT-TTA
** ***
8130140 GATTAGGTTTA
1 TTTTTTTTTTA
*
8130151 TTTAATATTCTTTA
1 TTT--T-TTTTTTA
*
8130165 TTTTTATATTTA
1 TTTTT-TTTTTA
* *
8130177 TTTTATATTTA
1 TTTTTTTTTTA
*
8130188 TTTTTGTTTTA
1 TTTTTTTTTTA
*
8130199 CTTTTCTTTTT-
1 -TTTTTTTTTTA
*
8130210 TTTATTTTTTA
1 TTTTTTTTTTA
**
8130221 TTTTCACTTTTA
1 TTTT-TTTTTTA
8130233 TTTTGTTTTATTA
1 TTTT-TTTT-TTA
8130246 TTT
1 TTT
8130249 CATTTTCTTT
Statistics
Matches: 109, Mismatches: 25, Indels: 26
0.68 0.16 0.16
Matches are distributed among these distances:
10 8 0.07
11 30 0.28
12 34 0.31
13 25 0.23
14 11 0.10
15 1 0.01
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:8130182 original size:31 final size:32
Alignment explanation
Indices: 8130097--8130182 Score: 77
Period size: 31 Copynumber: 2.7 Consensus size: 32
8130087 GGTTTTTTTT
* * * *
8130097 TTTATTTTTTTTATATATTTTATTTATTTATTT
1 TTTA-TTTTTATATTTATTTTATTTATATATTC
* * *
8130130 TTTATTATTAGA-TTAGGTTTATTTA-ATATTC
1 TTTATTTTTATATTTA-TTTTATTTATATATTC
8130161 TTTATTTTTATATTTATTTTAT
1 TTTATTTTTATATTTATTTTAT
8130183 ATTTATTTTT
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
31 21 0.51
32 16 0.39
33 4 0.10
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.71
Consensus pattern (32 bp):
TTTATTTTTATATTTATTTTATTTATATATTC
Found at i:8130223 original size:44 final size:44
Alignment explanation
Indices: 8130158--8130242 Score: 113
Period size: 44 Copynumber: 1.9 Consensus size: 44
8130148 TTATTTAATA
8130158 TTCTTTATTTTTATATTTATTTT-A-TATTTATTTTTGTTTTACTT
1 TTCTTTATTTTTATATTTATTTTCACT-TTTA-TTTTGTTTTACTT
*
8130202 TTCTTT-TTTTTATTTTTTATTTTCACTTTTATTTTGTTTTA
1 TTCTTTATTTTTA-TATTTATTTTCACTTTTATTTTGTTTTA
8130243 TTATTTCATT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
43 6 0.16
44 25 0.68
45 5 0.14
46 1 0.03
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.76
Consensus pattern (44 bp):
TTCTTTATTTTTATATTTATTTTCACTTTTATTTTGTTTTACTT
Found at i:8130333 original size:57 final size:57
Alignment explanation
Indices: 8130272--8130598 Score: 435
Period size: 57 Copynumber: 5.8 Consensus size: 57
8130262 TAAAATCTAA
* *
8130272 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATCTTTCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
* * *
8130329 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATTAATTTTTCTTAAAAATAAACTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
* *
8130386 TAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTT-
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
* ** * * * * *
8130442 TAAAACGATTTTTGAGGAAAAGTTGAAAATATCAATTTTT-TTCGAAATTAAGCTTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT-AAAAATAA-ATTTTC
** *
8130500 AAAAAATATTTTTGAAAAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
* *
8130557 AAAAAA-GTTTTTGAGGAAAAGTTAAAAGTATCAATTTTTCTT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
8130599 GCACAAAAGC
Statistics
Matches: 234, Mismatches: 32, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
55 2 0.01
56 75 0.32
57 116 0.50
58 39 0.17
59 2 0.01
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
Found at i:8130398 original size:114 final size:116
Alignment explanation
Indices: 8130272--8130598 Score: 493
Period size: 114 Copynumber: 2.9 Consensus size: 116
8130262 TAAAATCTAA
* * *
8130272 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATCTTTCTTAAAAATAAATTTTCAAAAAAGA
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAGA
*
8130337 TTTTTGAGGAAAAGTTGAAAGTATTAATTTTTCTT-AAAAATAAACTTT-C
66 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTCAAAAATAAACTTTCC
* * *
8130386 TAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTT-TAAAACGA
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAGA
* * * *
8130450 TTTTTGAGGAAAAGTTGAAAATATCAATTTTT-TTCGAAATTAAGCTTTCC
66 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTCAAAAATAAACTTTCC
* *
8130500 AAAAAATATTTTTGAAAAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAG-
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAGA
*
8130564 TTTTTGAGGAAAAGTTAAAAGTATCAATTTTTCTT
66 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
8130599 GCACAAAAGC
Statistics
Matches: 191, Mismatches: 18, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
112 2 0.01
113 46 0.24
114 136 0.71
115 7 0.04
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (116 bp):
AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAGA
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTCAAAAATAAACTTTCC
Found at i:8133069 original size:25 final size:25
Alignment explanation
Indices: 8133035--8133083 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
8133025 TTTAGAGGAG
8133035 CAATTTACTTTTAAAAGTCGTGGTA
1 CAATTTACTTTTAAAAGTCGTGGTA
*
8133060 CAATTTACTTTTCAAAGTCGTGGT
1 CAATTTACTTTTAAAAGTCGTGGT
8133084 GCCTCTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (25 bp):
CAATTTACTTTTAAAAGTCGTGGTA
Found at i:8133100 original size:66 final size:66
Alignment explanation
Indices: 8132994--8133124 Score: 208
Period size: 66 Copynumber: 2.0 Consensus size: 66
8132984 TGTTAAGGAG
* ** * *
8132994 CAATTTATTTTTCAAAGTTTTGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTAAAAGTCGTGGT
1 CAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTAAAAGTCGTGGT
8133059 A
66 A
*
8133060 CAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGT
1 CAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTAAAAGTCGTGGT
8133125 GTCTCTGTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (66 bp):
CAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTAAAAGTCGTGGT
A
Found at i:8133117 original size:41 final size:41
Alignment explanation
Indices: 8133060--8133266 Score: 231
Period size: 41 Copynumber: 5.0 Consensus size: 41
8133050 AGTCGTGGTA
*
8133060 CAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAG
1 CAATTTACTTTTCAAAGTCGTGGAGCCTCTATTTAGAGGAG
* * *
8133101 CAATTTACTTTTCAAAGTCGTGGTGTCTCTGTTTAGAGGAG
1 CAATTTACTTTTCAAAGTCGTGGAGCCTCTATTTAGAGGAG
* * *
8133142 CAATTTACTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAG
1 CAATTTACTTTTCAAAGTCGTGGAGCCTCTATTTAGAGGAG
* * * *
8133183 TAATTTACTTTTCAAAGTCGTTGAGCTTCTGA-TTAGAAGAG
1 CAATTTACTTTTCAAAGTCGTGGAGCCTCT-ATTTAGAGGAG
* *
8133224 CTTTATTTATTTTTCAAAGTCGTTGG-GCCTCTGA-TTAGAGGAG
1 C--AATTTACTTTTCAAAGTCG-TGGAGCCTCT-ATTTAGAGGAG
8133267 TTTTGATCAA
Statistics
Matches: 145, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
41 111 0.77
43 32 0.22
44 2 0.01
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.38
Consensus pattern (41 bp):
CAATTTACTTTTCAAAGTCGTGGAGCCTCTATTTAGAGGAG
Found at i:8133197 original size:82 final size:82
Alignment explanation
Indices: 8133060--8133267 Score: 265
Period size: 82 Copynumber: 2.5 Consensus size: 82
8133050 AGTCGTGGTA
* * * * *
8133060 CAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGT
1 CAATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGTAATTTACTTTTCAAAGTCGTGGA
* *
8133125 G-TCTCTGTTTAGAGGAG
66 GCT-TCTGATTAGAAGAG
* *
8133142 CAATTTACTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGTAATTTACTTTTCAAAGTCGTTGA
1 CAATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGTAATTTACTTTTCAAAGTCGTGGA
8133207 GCTTCTGATTAGAAGAG
66 GCTTCTGATTAGAAGAG
* * * *
8133224 CTTTATTTATTTTTCAAAGTCGTTGGGCCTCTGATTAGAGGAGT
1 C--AATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGT
8133268 TTTGATCAAG
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
82 72 0.66
83 1 0.01
84 36 0.33
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.38
Consensus pattern (82 bp):
CAATTTACTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGTAATTTACTTTTCAAAGTCGTGGA
GCTTCTGATTAGAAGAG
Found at i:8133490 original size:22 final size:23
Alignment explanation
Indices: 8133454--8133502 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
8133444 AATTTTGCTT
8133454 TTATTTTGTATTTTATATTTT-TA
1 TTATTTTGTATTTTA-ATTTTATA
8133477 TTATTTT-TATTTTAATTTTATA
1 TTATTTTGTATTTTAATTTTATA
8133499 TTAT
1 TTAT
8133503 ATATATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 5 0.20
22 13 0.52
23 7 0.28
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (23 bp):
TTATTTTGTATTTTAATTTTATA
Found at i:8133536 original size:25 final size:24
Alignment explanation
Indices: 8133462--8133564 Score: 68
Period size: 25 Copynumber: 4.2 Consensus size: 24
8133452 TTTTATTTTG
8133462 TATTTTATATTTT-TATTAT-T-TT
1 TATTTTA-ATTTTATATTATATATT
*
8133484 TATTTTAATTTTATATTATATATA
1 TATTTTAATTTTATATTATATATT
** * *
8133508 TATTTTCCTTTGTATCTTATGTATT
1 TATTTTAATTT-TATATTATATATT
* *
8133533 TATTATTTATTTATTTATTATTACTATT
1 TATT-TTAATTT-TATATTA-TA-TATT
8133561 TATT
1 TATT
8133565 AATATATATA
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
21 5 0.08
22 13 0.21
23 1 0.02
24 10 0.16
25 14 0.23
26 10 0.16
27 1 0.02
28 8 0.13
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (24 bp):
TATTTTAATTTTATATTATATATT
Found at i:8133541 original size:7 final size:7
Alignment explanation
Indices: 8133524--8133565 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
8133514 CCTTTGTATC
8133524 TTATGTAT
1 TTAT-TAT
8133532 TTATTAT
1 TTATTAT
8133539 TTATTTAT
1 TTA-TTAT
8133547 TTATTA-
1 TTATTAT
*
8133553 TTACTAT
1 TTATTAT
8133560 TTATTA
1 TTATTA
8133566 ATATATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
6 5 0.17
7 14 0.47
8 11 0.37
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (7 bp):
TTATTAT
Found at i:8133547 original size:15 final size:15
Alignment explanation
Indices: 8133524--8133564 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
8133514 CCTTTGTATC
*
8133524 TTATGTATTTATTAT
1 TTATTTATTTATTAT
8133539 TTATTTATTTATTAT
1 TTATTTATTTATTAT
8133554 TACTATTTATT
1 T--TATTTATT
8133565 AATATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.65
17 8 0.35
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (15 bp):
TTATTTATTTATTAT
Found at i:8133662 original size:24 final size:24
Alignment explanation
Indices: 8133611--8133766 Score: 94
Period size: 21 Copynumber: 6.9 Consensus size: 24
8133601 CTGTTAATAT
8133611 TTATATATGTA-TTTATTTATCTAG
1 TTATATAT-TATTTTATTTATCTAG
8133635 TTATATATTATTATTATTTAT-TCA-
1 TTATATATTATT-TTATTTATCT-AG
*
8133659 TTATATATTA--TAATTTATCT-G
1 TTATATATTATTTTATTTATCTAG
*
8133680 TTAT-TATTATTTT-TATTATCTTG
1 TTATATATTATTTTAT-TTATCTAG
8133703 -TA-ATATT-TTTTATTTATCTTA-
1 TTATATATTATTTTATTTATC-TAG
*
8133724 TTAT-T-TT-TTTCTAATTATCTA-
1 TTATATATTATTT-TATTTATCTAG
*
8133745 TTA-ATATTTTTTTTATTTATCT
1 TTATATA-TTATTTTATTTATCT
8133767 GAATTTTTTT
Statistics
Matches: 108, Mismatches: 5, Indels: 39
0.71 0.03 0.26
Matches are distributed among these distances:
20 5 0.05
21 32 0.30
22 26 0.24
23 13 0.12
24 23 0.21
25 9 0.08
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (24 bp):
TTATATATTATTTTATTTATCTAG
Found at i:8133700 original size:22 final size:22
Alignment explanation
Indices: 8133671--8133779 Score: 93
Period size: 21 Copynumber: 5.0 Consensus size: 22
8133661 ATATATTATA
* *
8133671 ATTTATCTGTTATTATTATTTTT
1 ATTTATCT-TTAATATTTTTTTT
8133694 A-TTATCTTGTAATA--TTTTTT
1 ATTTATCTT-TAATATTTTTTTT
*
8133714 ATTTATC-TTATTATTTTTTTCT
1 ATTTATCTTTAATATTTTTTT-T
*
8133736 AATTATCTATTAATATTTTTTTT
1 ATTTATCT-TTAATATTTTTTTT
* *
8133759 ATTTATC-TGAATTTTTTTTTT
1 ATTTATCTTTAATATTTTTTTT
8133780 TTTTTAGGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
19 4 0.06
20 7 0.10
21 23 0.32
22 17 0.24
23 8 0.11
24 12 0.17
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.69
Consensus pattern (22 bp):
ATTTATCTTTAATATTTTTTTT
Found at i:8133728 original size:19 final size:19
Alignment explanation
Indices: 8133673--8133732 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 19
8133663 ATATTATAAT
8133673 TTATCTGTTATTATTATTTTTA
1 TTATCT-TTATTA-T-TTTTTA
*
8133695 TTATCTTGTAATATTTTTTA
1 TTATCTT-TATTATTTTTTA
8133715 TTTATC-TTATTATTTTTT
1 -TTATCTTTATTATTTTTT
8133733 TCTAATTATC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
19 10 0.29
20 7 0.21
21 7 0.21
22 10 0.29
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (19 bp):
TTATCTTTATTATTTTTTA
Found at i:8133741 original size:43 final size:42
Alignment explanation
Indices: 8133671--8133766 Score: 115
Period size: 43 Copynumber: 2.2 Consensus size: 42
8133661 ATATATTATA
8133671 ATTTATCTGTTATTATTATTTTTATTATCT-TGTAATA-TTTTTT
1 ATTTATC--TTATTATTATTTTTATTATCTAT-TAATATTTTTTT
*
8133714 ATTTATCTTATTATTTTTTTCTAATTATCTATTAATATTTTTTTT
1 ATTTATCTTATTATTATTTT-T-ATTATCTATTAATA-TTTTTTT
8133759 ATTTATCT
1 ATTTATCT
8133767 GAATTTTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
41 12 0.26
42 1 0.02
43 19 0.40
44 1 0.02
45 14 0.30
ACGTcount: A:0.24, C:0.06, G:0.02, T:0.68
Consensus pattern (42 bp):
ATTTATCTTATTATTATTTTTATTATCTATTAATATTTTTTT
Found at i:8133780 original size:22 final size:21
Alignment explanation
Indices: 8133622--8133785 Score: 84
Period size: 22 Copynumber: 7.4 Consensus size: 21
8133612 TATATATGTA
8133622 TTTATTTATCTAGTTATATATTATT
1 TTTATTTATCTA-TTAT-T-TT-TT
* * *
8133647 ATTATTTAT-TCATTATATATT
1 TTTATTTATCT-ATTATTTTTT
* * *
8133668 ATAATTTATCTGTTATTATTATT
1 TTTATTTATCTATTATT-TT-TT
* *
8133691 TTTA-TTATCT-TGTAATATTT
1 TTTATTTATCTAT-TATTTTTT
8133711 TTTATTTATCTTATTATTTTTT
1 TTTATTTATC-TATTATTTTTT
* *
8133733 TCTAATTATCTATTAATATTTTT
1 TTTATTTATCTATT-AT-TTTTT
8133756 TTTATTTATCTGAATT-TTTTTT
1 TTTATTTATCT--ATTATTTTTT
*
8133778 TTTTTTTA
1 TTTATTTA
8133786 GGCTGAGATT
Statistics
Matches: 109, Mismatches: 18, Indels: 27
0.71 0.12 0.18
Matches are distributed among these distances:
20 6 0.06
21 25 0.23
22 41 0.38
23 20 0.18
24 5 0.05
25 12 0.11
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTATTTATCTATTATTTTTT
Found at i:8134597 original size:5 final size:5
Alignment explanation
Indices: 8134583--8134730 Score: 51
Period size: 5 Copynumber: 29.4 Consensus size: 5
8134573 CTGTTTCATG
* ** *
8134583 TTTT- TTTTA TTTTA -TTT- TTTTA TTTT- TATTA TTATTA GATTA GGTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA -TTTTA
* * * * *
8134631 TTTAA TATTC T-TTA TTTTTA TCTTTA TTTAA TTTTTA TTTTTG TTTTA
1 TTTTA TTTTA TTTTA -TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA
* * *
8134679 CTTTT- CTTTA TTTTA TTTT- TATT- TTTTA TTTTCA CTTTTA TTTTG
1 -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTTA
8134724 TTTTA TT
1 TTTTA TT
8134731 ATTTCATTTT
Statistics
Matches: 108, Mismatches: 21, Indels: 29
0.68 0.13 0.18
Matches are distributed among these distances:
4 24 0.22
5 50 0.46
6 30 0.28
7 4 0.04
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:8134601 original size:6 final size:6
Alignment explanation
Indices: 8134586--8134722 Score: 71
Period size: 6 Copynumber: 21.7 Consensus size: 6
8134576 TTTCATGTTT
* * * ** *
8134586 TTTTTA TTTTATT TTTTTA TTTTTA TTATTA TTAGATTA GGTTTA TTTAATA
1 TTTTTA TTTT-TA TTTTTA TTTTTA TTTTTA TT--TTTA TTTTTA TTT-TTA
* * * *
8134638 TTCTTTA TTTTTA TCTTTA -TTTAA TTTTTA TTTTT- GTTTTA CTTTTCTT
1 TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA
* *
8134687 TATTTTA TTTTTA TTTTTTA TTTTCA CTTTTA TTTT
1 T-TTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TTTT
8134723 GTTTTATTAT
Statistics
Matches: 98, Mismatches: 22, Indels: 22
0.69 0.15 0.15
Matches are distributed among these distances:
5 7 0.07
6 57 0.58
7 25 0.26
8 9 0.09
ACGTcount: A:0.19, C:0.04, G:0.03, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:8134721 original size:30 final size:30
Alignment explanation
Indices: 8134685--8134741 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8134675 TTTACTTTTC
* *
8134685 TTTATTTTATTTTTATT-TTTTATTTTCACT
1 TTTATTTT-GTTTTATTATTTCATTTTCACT
8134715 TTTATTTTGTTTTATTATTTCATTTTC
1 TTTATTTTGTTTTATTATTTCATTTTC
8134742 TTTAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (30 bp):
TTTATTTTGTTTTATTATTTCATTTTCACT
Found at i:8134732 original size:25 final size:24
Alignment explanation
Indices: 8134663--8134740 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 24
8134653 TTTATTTAAT
*
8134663 TTTTATTTTTGTTTTACTT-TTCTTTA
1 TTTTA-TTTTGTTTTA-TTATT-TTCA
*
8134689 TTTTATTTT-TATTTTTTATTTTCA
1 TTTTATTTTGT-TTTATTATTTTCA
8134713 CTTTTATTTTGTTTTATTA-TTTCA
1 -TTTTATTTTGTTTTATTATTTTCA
8134737 TTTT
1 TTTT
8134741 CTTTAAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
23 4 0.09
24 11 0.24
25 24 0.53
26 6 0.13
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (24 bp):
TTTTATTTTGTTTTATTATTTTCA
Found at i:8134740 original size:13 final size:11
Alignment explanation
Indices: 8134586--8134740 Score: 65
Period size: 11 Copynumber: 13.9 Consensus size: 11
8134576 TTTCATGTTT
8134586 TTTTTATTTTA
1 TTTTTATTTTA
8134597 --TTT-TTTTA
1 TTTTTATTTTA
8134605 TTTTTA--TTA
1 TTTTTATTTTA
* **
8134614 TTATTAGATTA
1 TTTTTATTTTA
**
8134625 GGTTTATTTAATA
1 TTTTTATTT--TA
8134638 TTCTTTATTTTTA
1 TT-TTTA-TTTTA
* *
8134651 TCTTTATTTAA
1 TTTTTATTTTA
8134662 TTTTTATTTT-
1 TTTTTATTTTA
*
8134672 TGTTTTACTTT-
1 T-TTTTATTTTA
*
8134683 TCTTTATTTTA
1 TTTTTATTTTA
8134694 TTTTTATTTTTTA
1 TTTTTA--TTTTA
*
8134707 TTTTCACTTTTA
1 TTTTTA-TTTTA
*
8134719 -TTTTGTTTTA
1 TTTTTATTTTA
8134729 TTATTTCATTTT
1 TT-TTT-ATTTT
8134741 CTTTAAATAA
Statistics
Matches: 107, Mismatches: 21, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
8 5 0.05
9 11 0.10
10 16 0.15
11 37 0.35
12 12 0.11
13 19 0.18
14 4 0.04
15 3 0.03
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.74
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:8134911 original size:58 final size:57
Alignment explanation
Indices: 8134757--8135088 Score: 303
Period size: 57 Copynumber: 5.7 Consensus size: 57
8134747 ATAAAATCCA
* **
8134757 AAAAAAATATTTTTTGAG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAACAAGCTTTC
1 AAAAAAA-A-TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* *
8134815 AAAAAAAAAAATAAATTTTTAAGGAAAAA-TTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 ------AAAAA-AAATTTTTGA-GAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
*
8134879 AAAAAAAAGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAA-TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* * * * * *
8134937 AAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC
1 AAAAAAAATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* * * * * * * * *
8134994 AAAATATA-TTTTGGGAAAAAATTGAAAGTATCAATTTTTCTCGAGATTAAAATTTTT
1 AAAAAAAATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAATTTTC
* * * *
8135051 AAAAAATA-TTTTGGGGAAAAGTTGAAAGTATAAATTTT
1 AAAAAAAATTTTTGAGAAAAAGTTGAAAGTATCAATTTT
8135089 TTCTGTACAA
Statistics
Matches: 236, Mismatches: 26, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
56 36 0.15
57 97 0.41
58 53 0.22
63 6 0.03
64 38 0.16
65 6 0.03
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.35
Consensus pattern (57 bp):
AAAAAAAATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
Found at i:8135069 original size:113 final size:113
Alignment explanation
Indices: 8134822--8135089 Score: 297
Period size: 113 Copynumber: 2.3 Consensus size: 113
8134812 TTCAAAAAAA
* * * * * *
8134822 AAAATAAATTTTTAAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAA
1 AAAA-AAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAAGTTTCAAAAAAAA
* *
8134887 GTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
65 G-TTTTGAGAAAAAATTGAAAGTATCAATTTTCCTCAAAAATAAATTTTC
* * * *
8134937 AAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCAAAATATA
1 AAAAAAAG-TTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAAGTTTCAAAAAAAA
* * * * * *
8135002 -TTTTGGGAAAAAATTGAAAGTATCAATTTTTCTCGAGATTAAAATTTTT
65 GTTTTGAGAAAAAATTGAAAGTATCAATTTTCCTCAAAAAT-AAATTTTC
* *
8135051 AAAAAATA-TTTTGGGGAAAAGTTGAAAGTATAAATTTTT
1 AAAAAA-AGTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
8135090 TCTGTACAAA
Statistics
Matches: 130, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
113 62 0.48
114 16 0.12
115 52 0.40
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.37
Consensus pattern (113 bp):
AAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAAGTTTCAAAAAAAAG
TTTTGAGAAAAAATTGAAAGTATCAATTTTCCTCAAAAATAAATTTTC
Found at i:8135923 original size:23 final size:23
Alignment explanation
Indices: 8135851--8135923 Score: 78
Period size: 22 Copynumber: 3.2 Consensus size: 23
8135841 ATGTTATAAC
* *
8135851 ATTTTGAAT-AATTATAATTATTT
1 ATTTTAAATAAATT-TAACTATTT
* * *
8135874 ATTTTAAACATATTTATCT-TTT
1 ATTTTAAATAAATTTAACTATTT
8135896 ATTTTAAATAAATTTAACTATTT
1 ATTTTAAATAAATTTAACTATTT
8135919 ATTTT
1 ATTTT
8135924 TATTTTTTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
22 19 0.47
23 18 0.45
24 3 0.08
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (23 bp):
ATTTTAAATAAATTTAACTATTT
Found at i:8140013 original size:53 final size:53
Alignment explanation
Indices: 8139956--8140060 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
8139946 ATTTATAAAA
* * ** * * *
8139956 TTAATAAAGAATTAAAAATTTATTAAATTGTTTTATGTTAAATAATAATTTTG
1 TTAATAAAGAATTAAAAATTAATAAAATAATTATATATCAAATAATAATTTTG
*
8140009 TTAATAAATAATTAAAAATTAATAAAATAATTATATATCAAATAATAATTTT
1 TTAATAAAGAATTAAAAATTAATAAAATAATTATATATCAAATAATAATTTT
8140061 TTATTTTATG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (53 bp):
TTAATAAAGAATTAAAAATTAATAAAATAATTATATATCAAATAATAATTTTG
Found at i:8144292 original size:3 final size:3
Alignment explanation
Indices: 8144284--8144321 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8144274 CAATCAATAT
8144284 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8144322 CAATTCTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8144340 original size:6 final size:6
Alignment explanation
Indices: 8144283--8144391 Score: 51
Period size: 6 Copynumber: 17.8 Consensus size: 6
8144273 CCAATCAATA
* * * * * * * * *
8144283 TTTATT ATTATT ATTATT ATTATT ATTATT ATTATT ATTCAAT TCTAAT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT -TTTATT TTTATT
* **
8144332 TTTATTT TTTAAT TTTATT TTTAAC TTTATT TTT-TAT TTTA-T TTTACTT
1 TTTA-TT TTTATT TTTATT TTTATT TTTATT TTTAT-T TTTATT TTTA-TT
*
8144381 TTAATT TTTAT
1 TTTATT TTTAT
8144392 GCTATTTTTA
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
5 6 0.07
6 63 0.78
7 12 0.15
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTATT
Found at i:8144346 original size:13 final size:13
Alignment explanation
Indices: 8144328--8144376 Score: 75
Period size: 12 Copynumber: 3.9 Consensus size: 13
8144318 TATTCAATTC
8144328 TAATTTTATTTTT
1 TAATTTTATTTTT
8144341 TAATTTTA-TTTT
1 TAATTTTATTTTT
*
8144353 TAACTTTATTTTT
1 TAATTTTATTTTT
8144366 T-ATTTTATTTT
1 TAATTTTATTTT
8144377 ACTTTTAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
12 20 0.61
13 13 0.39
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (13 bp):
TAATTTTATTTTT
Found at i:8144353 original size:19 final size:19
Alignment explanation
Indices: 8144290--8144354 Score: 53
Period size: 19 Copynumber: 3.5 Consensus size: 19
8144280 ATATTTATTA
*
8144290 TTATTATTATTATT--ATT
1 TTATTTTTATTATTCAATT
*
8144307 ATTATTATTATTATTCAATT
1 -TTATTTTTATTATTCAATT
* * * *
8144327 CTAATTTTATTTTTTAATT
1 TTATTTTTATTATTCAATT
8144346 TTATTTTTA
1 TTATTTTTA
8144355 ACTTTATTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
18 14 0.37
19 21 0.55
20 3 0.08
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTTTATTATTCAATT
Found at i:8144354 original size:12 final size:12
Alignment explanation
Indices: 8144328--8144390 Score: 74
Period size: 12 Copynumber: 5.2 Consensus size: 12
8144318 TATTCAATTC
8144328 TAATTTTATTTTT
1 TAATTTTA-TTTT
8144341 TAATTTTATTTT
1 TAATTTTATTTT
*
8144353 TAACTTTATTTT
1 TAATTTTATTTT
*
8144365 TTATTTTA-TTT
1 TAATTTTATTTT
*
8144376 TACTTTTAATTTT
1 TAATTTT-ATTTT
8144389 TA
1 TA
8144391 TGCTATTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
11 8 0.19
12 22 0.51
13 13 0.30
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (12 bp):
TAATTTTATTTT
Found at i:8144370 original size:24 final size:25
Alignment explanation
Indices: 8144331--8144403 Score: 89
Period size: 23 Copynumber: 3.0 Consensus size: 25
8144321 TCAATTCTAA
8144331 TTTTATTTTTTAATTTTATTTTTAAC
1 TTTTATTTTTT-ATTTTATTTTTAAC
8144357 -TTTATTTTTTATTTTA-TTTT-AC
1 TTTTATTTTTTATTTTATTTTTAAC
* **
8144379 TTTTAATTTTTATGCTATTTTTAAC
1 TTTTATTTTTTATTTTATTTTTAAC
8144404 AAGAAAATTG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 2 0.05
23 17 0.41
24 10 0.24
25 12 0.29
ACGTcount: A:0.22, C:0.05, G:0.01, T:0.71
Consensus pattern (25 bp):
TTTTATTTTTTATTTTATTTTTAAC
Found at i:8144802 original size:21 final size:22
Alignment explanation
Indices: 8144756--8144802 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
8144746 TCTTTTAGAG
** *
8144756 GTTTTTGAAAACTTTCAAGTAT
1 GTTTTTGAAAACACTCAAATAT
8144778 -TTTTTGAAAACACT-AAATAT
1 GTTTTTGAAAACACTCAAATAT
8144798 GTTTT
1 GTTTT
8144803 CAAGTATCGT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.47
Consensus pattern (22 bp):
GTTTTTGAAAACACTCAAATAT
Found at i:8144864 original size:23 final size:22
Alignment explanation
Indices: 8144833--8144934 Score: 73
Period size: 23 Copynumber: 4.5 Consensus size: 22
8144823 TTCAAGTATT
* *
8144833 TTTTGAAAACCTCCAGATATTA
1 TTTTAAAAACCTCCAGATATCA
*
8144855 TCTTTAAAAACCTTCA-AGTATCA
1 T-TTTAAAAACCTCCAGA-TATCA
* * * *
8144878 TTTTTAAAACTTTCTAG-TATCT
1 TTTTAAAAAC-CTCCAGATATCA
* *
8144900 TTTTGAAAACCTCCAGGTATCA
1 TTTTAAAAACCTCCAGATATCA
8144922 TCTTTAAAAACCT
1 T-TTTAAAAACCT
8144935 TTGGGTATCA
Statistics
Matches: 61, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
21 4 0.07
22 28 0.46
23 29 0.48
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (22 bp):
TTTTAAAAACCTCCAGATATCA
Found at i:8144896 original size:22 final size:22
Alignment explanation
Indices: 8144800--8144986 Score: 100
Period size: 22 Copynumber: 8.5 Consensus size: 22
8144790 CTAAATATGT
* *
8144800 TTTCAAGTATCGTATTTAAAAC
1 TTTCAAGTATCATTTTTAAAAC
8144822 TTTCAAGTAT--TTTTTGAAAAC
1 TTTCAAGTATCATTTTT-AAAAC
* * * *
8144843 -CTCCAGATATTATCTTTAAAAAC
1 TTTCAAG-TATCAT-TTTTAAAAC
*
8144866 CTTCAAGTATCATTTTTAAAAC
1 TTTCAAGTATCATTTTTAAAAC
*
8144888 TTTCTAGTATC-TTTTTGAAAAC
1 TTTCAAGTATCATTTTT-AAAAC
* * * *
8144910 CTCCAGGTATCATCTTTAAAAACC
1 TTTCAAGTATCAT-TTTTAAAA-C
**
8144934 TTT-GGGTATCATTTTTAAAACC
1 TTTCAAGTATCATTTTTAAAA-C
* *
8144956 TTT-GAGTATTATCTTTT-AAAC
1 TTTCAAGTATCAT-TTTTAAAAC
*
8144977 TTTCGAGTAT
1 TTTCAAGTAT
8144987 TTTTTTCAAA
Statistics
Matches: 132, Mismatches: 21, Indels: 24
0.75 0.12 0.14
Matches are distributed among these distances:
20 8 0.06
21 17 0.13
22 67 0.51
23 28 0.21
24 12 0.09
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (22 bp):
TTTCAAGTATCATTTTTAAAAC
Found at i:8144941 original size:23 final size:23
Alignment explanation
Indices: 8144915--8145016 Score: 86
Period size: 22 Copynumber: 4.5 Consensus size: 23
8144905 AAAACCTCCA
8144915 GGTATCATCTTTAAAAACCTTTG
1 GGTATCATCTTTAAAAACCTTTG
*
8144938 GGTATCAT-TTTTAAAACCTTTG
1 GGTATCATCTTTAAAAACCTTTG
* * *
8144960 AGTATTATCTTT-TAAA-CTTTCG
1 GGTATCATCTTTAAAAACCTTT-G
* * *
8144982 AGTAT-TTTTTTCAAAAACCTTTG
1 GGTATCATCTTT-AAAAACCTTTG
*
8145005 GGTATTATCTTT
1 GGTATCATCTTT
8145017 CATAACTTTC
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
21 8 0.13
22 28 0.44
23 19 0.30
24 8 0.13
ACGTcount: A:0.27, C:0.14, G:0.12, T:0.47
Consensus pattern (23 bp):
GGTATCATCTTTAAAAACCTTTG
Found at i:8144964 original size:67 final size:66
Alignment explanation
Indices: 8144801--8144954 Score: 227
Period size: 67 Copynumber: 2.3 Consensus size: 66
8144791 TAAATATGTT
* * *
8144801 TTCAAGTATCGTATTTAAAACTTTCAAGTATTTTTTGAAAACCTCCAGATATTATCTTTAAAAAC
1 TTCAAGTATCATTTTTAAAACTTTCAAGTATTTTTTGAAAACCTCCAGATATCATCTTTAAAAAC
8144866 C
66 C
* *
8144867 TTCAAGTATCATTTTTAAAACTTTCTAGTATCTTTTTGAAAACCTCCAGGTATCATCTTTAAAAA
1 TTCAAGTATCATTTTTAAAACTTTCAAGTAT-TTTTTGAAAACCTCCAGATATCATCTTTAAAAA
8144932 CC
65 CC
***
8144934 TTTGGGTATCATTTTTAAAAC
1 TTCAAGTATCATTTTTAAAAC
8144955 CTTTGAGTAT
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
66 28 0.35
67 51 0.65
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (66 bp):
TTCAAGTATCATTTTTAAAACTTTCAAGTATTTTTTGAAAACCTCCAGATATCATCTTTAAAAAC
C
Found at i:8144970 original size:45 final size:44
Alignment explanation
Indices: 8144857--8145026 Score: 130
Period size: 45 Copynumber: 3.8 Consensus size: 44
8144847 AGATATTATC
** * * * *
8144857 TTTAAAAACCTTCAAGTATCATTTTTAAAACTTTCTAGTATCTT
1 TTTAAAAACCTTTGAGTATTATCTTTAAAACTTTCGAGTATATT
* ** * *
8144901 TTTGAAAACC-TCCAGGTATCATCTTTAAAAACCTTT-GGGTATCATT
1 TTTAAAAACCTTTGA-GTATTATCTTT-AAAA-CTTTCGAGTAT-ATT
* *
8144947 TTT-AAAACCTTTGAGTATTATCTTTTAAACTTTCGAGTATTTT
1 TTTAAAAACCTTTGAGTATTATCTTTAAAACTTTCGAGTATATT
* *
8144990 TTTCAAAAACCTTTGGGTATTATCTTTCATAACTTTC
1 TTT-AAAAACCTTTGAGTATTATCTTT-AAAACTTTC
8145027 AAATATCTTT
Statistics
Matches: 102, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 12 0.12
44 27 0.26
45 45 0.44
46 18 0.18
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (44 bp):
TTTAAAAACCTTTGAGTATTATCTTTAAAACTTTCGAGTATATT
Found at i:8145424 original size:183 final size:181
Alignment explanation
Indices: 8145210--8145575 Score: 554
Period size: 183 Copynumber: 2.0 Consensus size: 181
8145200 CCACTAGATA
* *
8145210 TTCCTTACAAATCATCCTCAACTCATTTTTCAAATCCTCTAGGTAACAAATTTTAACGTTTTTTC
1 TTCCTTACAAATCATCCTCAAATCATTTTTCAAATCCTCTAGGTAACAAATTTTAAAGTTTTTTC
* * **
8145275 AATTAAGACTATCAAAGTTTCAAAGCCTTTGTTAAAAAGGAGCTTTTTGAAAATTAGAACAATCC
66 AATTAAGACTATCAAAGTTTCAAAGCCTCTATTAAAAAAAAGCTTTTTGAAAATTAGAACAATCC
*
8145340 TTAAT-ACCTTTAGGCATGATTAATAAGACCTTTAGGTATAATCTTTTAAAAC
131 TT-ATGACCTTTAGGCATAATTAATAA-ACCTTTAGGTATAATCTTTTAAAAC
** * **
8145392 TTCCTTACGAAATCATCCTCAAATTGTTTTTCAAATCCTTTAGGTAATGAATTTTAAAGTTTTTT
1 TTCCTTAC-AAATCATCCTCAAATCATTTTTCAAATCCTCTAGGTAACAAATTTTAAAGTTTTTT
*
8145457 CAATTAAGATTATCAAAGTTTCAAAGCCTCTATTAAAAAAAAGCTTTTTGAAAATTAGAACAATC
65 CAATTAAGACTATCAAAGTTTCAAAGCCTCTATTAAAAAAAAGCTTTTTGAAAATTAGAACAATC
* * *
8145522 CTTATGACCTTTAGGTATAATTAGTAAACCTTTGGGTATAATCTTTTAAAAC
130 CTTATGACCTTTAGGCATAATTAATAAACCTTTAGGTATAATCTTTTAAAAC
8145574 TT
1 TT
8145576 TCGAGTATCA
Statistics
Matches: 166, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
182 36 0.22
183 130 0.78
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (181 bp):
TTCCTTACAAATCATCCTCAAATCATTTTTCAAATCCTCTAGGTAACAAATTTTAAAGTTTTTTC
AATTAAGACTATCAAAGTTTCAAAGCCTCTATTAAAAAAAAGCTTTTTGAAAATTAGAACAATCC
TTATGACCTTTAGGCATAATTAATAAACCTTTAGGTATAATCTTTTAAAAC
Found at i:8145606 original size:22 final size:22
Alignment explanation
Indices: 8145547--8145611 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
8145537 TATAATTAGT
* *
8145547 AAACCTTTGGGTATAATCTTTTA
1 AAACCTTTAGGTATCATC-TTTA
*
8145570 AAA-CTTTCGAGTATCATCTTTA
1 AAACCTTTAG-GTATCATCTTTA
8145592 AAACCTTTAGGTATC-TCTTT
1 AAACCTTTAGGTATCATCTTT
8145612 TCAAAAACCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 5 0.14
22 17 0.46
23 15 0.41
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (22 bp):
AAACCTTTAGGTATCATCTTTA
Found at i:8145642 original size:24 final size:24
Alignment explanation
Indices: 8145583--8145648 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
8145573 CTTTCGAGTA
**
8145583 TCATCTTTAAAACCTTTAGGTATC
1 TCATCTTTAAAACCTCCAGGTATC
*
8145607 TC-T-TTTCAAAAACCTCCAGGTGTC
1 TCATCTTT--AAAACCTCCAGGTATC
*
8145631 TCATCTTTAAAATCTCCA
1 TCATCTTTAAAACCTCCA
8145649 AGTACATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
22 3 0.09
23 1 0.03
24 26 0.76
25 1 0.03
26 3 0.09
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.38
Consensus pattern (24 bp):
TCATCTTTAAAACCTCCAGGTATC
Found at i:8146655 original size:4 final size:4
Alignment explanation
Indices: 8146620--8146714 Score: 52
Period size: 4 Copynumber: 23.5 Consensus size: 4
8146610 TTTATTTTGC
* * * * *
8146620 TATT TTTT TACT TATT CATT TATT TCTA TATT TATT TATT TA-T TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
* * * *
8146667 TGTT T-TT TATTT TGATTT TATT T-TT TAACT TATT GATT AATT TATT
1 TATT TATT TA-TT T-A-TT TATT TATT T-ATT TATT TATT TATT TATT
8146713 TA
1 TA
8146715 ATTGATGAAA
Statistics
Matches: 69, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
3 9 0.13
4 49 0.71
5 6 0.09
6 5 0.07
ACGTcount: A:0.23, C:0.04, G:0.03, T:0.69
Consensus pattern (4 bp):
TATT
Found at i:8149355 original size:31 final size:30
Alignment explanation
Indices: 8149304--8149410 Score: 96
Period size: 28 Copynumber: 3.7 Consensus size: 30
8149294 GTTTTCTTTG
* *
8149304 TTATTATTGTTACTATAGTATAGTATGTTA
1 TTATTATTATTATTATAGTATAGTATGTTA
* *
8149334 TTATATATTATTATTATAGTATAATGTGTTA
1 TTAT-TATTATTATTATAGTATAGTATGTTA
** * *
8149365 -TGGTA-TAATATTATAGTATAGCA--TTA
1 TTATTATTATTATTATAGTATAGTATGTTA
*
8149391 TTATTAGTATTATTATAGTA
1 TTATTATTATTATTATAGTA
8149411 CAATATATAG
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
26 3 0.05
27 3 0.05
28 26 0.43
29 2 0.03
30 5 0.08
31 22 0.36
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (30 bp):
TTATTATTATTATTATAGTATAGTATGTTA
Found at i:8149426 original size:17 final size:17
Alignment explanation
Indices: 8149404--8149441 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
8149394 TTAGTATTAT
8149404 TATAGTACAATATATAG
1 TATAGTACAATATATAG
* *
8149421 TATAGTACATTATATTG
1 TATAGTACAATATATAG
8149438 TATA
1 TATA
8149442 TTATTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (17 bp):
TATAGTACAATATATAG
Found at i:8150253 original size:13 final size:13
Alignment explanation
Indices: 8150231--8150299 Score: 50
Period size: 13 Copynumber: 5.2 Consensus size: 13
8150221 CAATTGCATG
*
8150231 TTTTTCTTTT-TT
1 TTTTTATTTTATT
8150243 TATTTTATTTTTATT
1 T-TTTTA-TTTTATT
* *
8150258 TTTTGATTTGATT
1 TTTTTATTTTATT
* **
8150271 TTATTATTTTAAG
1 TTTTTATTTTATT
8150284 TTTTTATTTCTATT
1 TTTTTATTT-TATT
8150298 TT
1 TT
8150300 ATTTCCAATT
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
12 1 0.02
13 26 0.62
14 12 0.29
15 3 0.07
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.77
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:8150259 original size:18 final size:17
Alignment explanation
Indices: 8150238--8150281 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
8150228 ATGTTTTTCT
*
8150238 TTTTTTATTTTATTTTTA
1 TTTTTTATTTGA-TTTTA
8150256 TTTTTTGATTTGATTTTA
1 TTTTTT-ATTTGATTTTA
8150274 TTATTTTA
1 TT-TTTTA
8150282 AGTTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (17 bp):
TTTTTTATTTGATTTTA
Found at i:8150259 original size:19 final size:19
Alignment explanation
Indices: 8150231--8150281 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
8150221 CAATTGCATG
* *
8150231 TTTTTCTTTTTTTATTTTA
1 TTTTTATTTTTTTATTTGA
*
8150250 TTTTTATTTTTTGATTTGA
1 TTTTTATTTTTTTATTTGA
*
8150269 -TTTTATTATTTTA
1 TTTTTATTTTTTTA
8150282 AGTTTTTATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (19 bp):
TTTTTATTTTTTTATTTGA
Found at i:8150277 original size:27 final size:27
Alignment explanation
Indices: 8150247--8150302 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8150237 TTTTTTTATT
* *
8150247 TTATTTTTATTTTTTGATTT-GATTTTA
1 TTATTTTAAGTTTTT-ATTTCGATTTTA
*
8150274 TTATTTTAAGTTTTTATTTCTATTTTA
1 TTATTTTAAGTTTTTATTTCGATTTTA
8150301 TT
1 TT
8150303 TCCAATTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (27 bp):
TTATTTTAAGTTTTTATTTCGATTTTA
Found at i:8152518 original size:24 final size:25
Alignment explanation
Indices: 8152491--8152547 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
8152481 GACATATTAC
*
8152491 TTTTGTTTTTCATA-AGGTTCTTTT
1 TTTTGTTTTTCATATAGGTTATTTT
* * **
8152515 TTTTATTTTTTATATATTTTATTTT
1 TTTTGTTTTTCATATAGGTTATTTT
8152540 TTTTGTTT
1 TTTTGTTT
8152548 CGATAGTGAC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 12 0.46
25 14 0.54
ACGTcount: A:0.14, C:0.04, G:0.07, T:0.75
Consensus pattern (25 bp):
TTTTGTTTTTCATATAGGTTATTTT
Found at i:8153057 original size:12 final size:13
Alignment explanation
Indices: 8153026--8153058 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
8153016 CTCTACACAA
8153026 AAAAAAATTATCT
1 AAAAAAATTATCT
8153039 AAAAAAATTAT-T
1 AAAAAAATTATCT
8153051 AATAAAAA
1 AA-AAAAA
8153059 AGAAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 3 0.16
13 16 0.84
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (13 bp):
AAAAAAATTATCT
Found at i:8153072 original size:21 final size:20
Alignment explanation
Indices: 8153048--8153097 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
8153038 TAAAAAAATT
*
8153048 ATTAATAAAAAAGAAAAGTAA
1 ATTAA-AAAAAAGAAAACTAA
*
8153069 ATTAAAGAAAAAGTAAACTAA
1 ATTAAA-AAAAAGAAAACTAA
*
8153090 AATAAAAA
1 ATTAAAAA
8153098 TAAAAGATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.72, C:0.02, G:0.08, T:0.18
Consensus pattern (20 bp):
ATTAAAAAAAAGAAAACTAA
Found at i:8153082 original size:16 final size:15
Alignment explanation
Indices: 8153057--8153090 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
8153047 TATTAATAAA
*
8153057 AAAGAAAAGTAAATT
1 AAAGAAAAGTAAACT
8153072 AAAGAAAAAGTAAACT
1 AAAG-AAAAGTAAACT
8153088 AAA
1 AAA
8153091 ATAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.71, C:0.03, G:0.12, T:0.15
Consensus pattern (15 bp):
AAAGAAAAGTAAACT
Found at i:8153565 original size:5 final size:5
Alignment explanation
Indices: 8153555--8153603 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
8153545 ATGTTAAATT
* * *
8153555 TTATA TTATA TTATA TTATA TTATA TTTTT TTATA TATGTA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA T-TATA TTATA TTA
8153604 ATAAAGATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (5 bp):
TTATA
Found at i:8153646 original size:29 final size:27
Alignment explanation
Indices: 8153594--8153662 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 27
8153584 TTTATATATG
*
8153594 TATTATATTAATAAAGATATTATTTAA
1 TATTATATTAAAAAAGATATTATTTAA
8153621 TATTATAATTTAAAAAATGATA-TATTT-A
1 TATTAT-A-TTAAAAAA-GATATTATTTAA
8153649 TATGTA-ATTAAAAA
1 TAT-TATATTAAAAA
8153663 GTAATTTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
26 7 0.19
27 7 0.19
28 5 0.14
29 14 0.38
30 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (27 bp):
TATTATATTAAAAAAGATATTATTTAA
Found at i:8157500 original size:15 final size:15
Alignment explanation
Indices: 8157482--8157527 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
8157472 ATTGTACACC
* *
8157482 TTGGATGCATACATT
1 TTGGATGAATACAAT
*
8157497 TTGGATGAATATAAT
1 TTGGATGAATACAAT
*
8157512 TTGGATGAATATAAT
1 TTGGATGAATACAAT
8157527 T
1 T
8157528 GTACATATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.35, C:0.04, G:0.20, T:0.41
Consensus pattern (15 bp):
TTGGATGAATACAAT
Found at i:8161413 original size:12 final size:12
Alignment explanation
Indices: 8161396--8161420 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8161386 TCAAAGCAAC
8161396 TGCAACTTGGTA
1 TGCAACTTGGTA
8161408 TGCAACTTGGTA
1 TGCAACTTGGTA
8161420 T
1 T
8161421 CTTTTCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (12 bp):
TGCAACTTGGTA
Found at i:8164741 original size:20 final size:19
Alignment explanation
Indices: 8164718--8164790 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 19
8164708 TATGAATTAA
8164718 AATTTTATTTTTTTAAAATT
1 AATTTTATTTTTTTAAAA-T
*
8164738 AATTTTAATTATTTTATATAAT
1 AATTTT-ATT-TTTT-TAAAAT
8164760 -ATTTT-TTTATTTTCAAAAT
1 AATTTTATTT-TTTT-AAAAT
8164779 AATATTTATTTT
1 AAT-TTTATTTT
8164791 AACATGTTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
18 2 0.05
19 9 0.21
20 8 0.19
21 12 0.28
22 8 0.19
23 4 0.09
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (19 bp):
AATTTTATTTTTTTAAAAT
Found at i:8165369 original size:18 final size:20
Alignment explanation
Indices: 8165329--8165371 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
8165319 AACTTACTAA
* *
8165329 ATATACATTTATGATAAATT
1 ATATACATTTATCATAAAAT
8165349 ATATA-ATTTATCA-AAAAT
1 ATATACATTTATCATAAAAT
8165367 ATATA
1 ATATA
8165372 TCTAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.43
19 7 0.33
20 5 0.24
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (20 bp):
ATATACATTTATCATAAAAT
Found at i:8165372 original size:20 final size:20
Alignment explanation
Indices: 8165329--8165371 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
8165319 AACTTACTAA
* *
8165329 ATATACATTTATGATAAATT
1 ATATACATTTATCAAAAATT
8165349 ATATA-ATTTATCAAAAA-T
1 ATATACATTTATCAAAAATT
8165367 ATATA
1 ATATA
8165372 TCTAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (20 bp):
ATATACATTTATCAAAAATT
Found at i:8165708 original size:6 final size:6
Alignment explanation
Indices: 8165693--8165764 Score: 55
Period size: 6 Copynumber: 12.5 Consensus size: 6
8165683 TTTTTTAATT
* **
8165693 TTTATA -TTATA TTTAT- TATTGTA TTTATA TTTATA TTTA-A TAAATA
1 TTTATA TTTATA TTTATA T-TTATA TTTATA TTTATA TTTATA TTTATA
*
8165739 TTT-TAA ATT-TA TTTATA TTTATA TTT
1 TTTAT-A TTTATA TTTATA TTTATA TTT
8165765 TTACAAATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
5 13 0.25
6 38 0.73
7 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (6 bp):
TTTATA
Found at i:8165824 original size:7 final size:7
Alignment explanation
Indices: 8165812--8165839 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
8165802 CATAACTTAA
8165812 AAAAATT
1 AAAAATT
8165819 AAAAATT
1 AAAAATT
8165826 AAAAATT
1 AAAAATT
8165833 AAAAATT
1 AAAAATT
8165840 TTAACTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:8165915 original size:27 final size:25
Alignment explanation
Indices: 8165885--8165956 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 25
8165875 ATTTTTCATA
8165885 AATATATATTTTTAATAAAAATAA-
1 AATATATATTTTTAATAAAAATAAT
* *
8165909 ATTA-ATATTAATTAATATAAAATAAT
1 AATATATATT-TTTAATA-AAAATAAT
8165935 AGAT-TATATTGTTTAATAAAAA
1 A-ATATATATT-TTTAATAAAAA
8165957 ATTTAAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
23 5 0.13
24 9 0.24
25 7 0.18
26 5 0.13
27 12 0.32
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (25 bp):
AATATATATTTTTAATAAAAATAAT
Found at i:8165957 original size:27 final size:23
Alignment explanation
Indices: 8165882--8165958 Score: 66
Period size: 23 Copynumber: 3.1 Consensus size: 23
8165872 ATAATTTTTC
8165882 ATAAATATATATTTTTAAT-AAAA
1 ATAAAT-TATATTTTTAATAAAAA
*
8165905 ATAAATTAATATTAATTAATATAAAATA
1 ATAAATT-ATATT--TTTA-ATAAAA-A
*
8165933 ATAGATTATATTGTTTAATAAAAA
1 ATAAATTATATT-TTTAATAAAAA
8165957 AT
1 AT
8165959 TTAAATATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
22 1 0.02
23 11 0.25
24 3 0.07
25 9 0.20
26 5 0.11
27 8 0.18
28 7 0.16
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (23 bp):
ATAAATTATATTTTTAATAAAAA
Found at i:8167913 original size:2 final size:2
Alignment explanation
Indices: 8167886--8167933 Score: 62
Period size: 2 Copynumber: 24.5 Consensus size: 2
8167876 TTTAGTGTTT
* * *
8167886 TA TA TT TA TA TG TA TA T- TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8167927 TA TA TA T
1 TA TA TA T
8167934 GAGCTATACC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8170628 original size:41 final size:43
Alignment explanation
Indices: 8170552--8170640 Score: 137
Period size: 41 Copynumber: 2.1 Consensus size: 43
8170542 TGTACACCTC
8170552 GATAAGTAAGTTTTACAAAAAAAAAGAAAAGTAATAATTACGT
1 GATAAGTAAGTTTTACAAAAAAAAAGAAAAGTAATAATTACGT
***
8170595 GATAAGTAAGTTTT-TTTAAAAAAAG-AAAGTAATAATTACGT
1 GATAAGTAAGTTTTACAAAAAAAAAGAAAAGTAATAATTACGT
8170636 GATAA
1 GATAA
8170641 ATGATAATAG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 21 0.49
42 8 0.19
43 14 0.33
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.29
Consensus pattern (43 bp):
GATAAGTAAGTTTTACAAAAAAAAAGAAAAGTAATAATTACGT
Found at i:8174417 original size:68 final size:68
Alignment explanation
Indices: 8174328--8174455 Score: 211
Period size: 68 Copynumber: 1.9 Consensus size: 68
8174318 GTAGATTTAT
* * *
8174328 CCTCCATCAAATTGTTGATTAATATATGTTATAAATGAAGATAAAAATATTTAAATCTTCTGTAC
1 CCTCCACCAAATCGTCGATTAATATATGTTATAAATGAAGATAAAAATATTTAAATCTTCTGTAC
8174393 GTG
66 GTG
* *
8174396 CCTCCACCAAATCGTCGATTAATATATGTTTTAAATGAAGATAAAAATATTTAAGTCTTC
1 CCTCCACCAAATCGTCGATTAATATATGTTATAAATGAAGATAAAAATATTTAAATCTTC
8174456 AGCGCCTGCC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 55 1.00
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (68 bp):
CCTCCACCAAATCGTCGATTAATATATGTTATAAATGAAGATAAAAATATTTAAATCTTCTGTAC
GTG
Found at i:8178519 original size:17 final size:18
Alignment explanation
Indices: 8178489--8178528 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
8178479 TAGGCTTAAA
8178489 TTTTTATTAATTTAATAAT
1 TTTTTATT-ATTTAATAAT
*
8178508 TTTTTATT-TTTATTAAT
1 TTTTTATTATTTAATAAT
8178525 TTTT
1 TTTT
8178529 GTTAGATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 12 0.60
19 8 0.40
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTATTATTTAATAAT
Found at i:8178901 original size:16 final size:16
Alignment explanation
Indices: 8178880--8178922 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
8178870 TTACATGTTT
*
8178880 TTTAGTGGAATATAAG
1 TTTAGTCGAATATAAG
8178896 TTTAGTCGAATATAAG
1 TTTAGTCGAATATAAG
*
8178912 TTTAGTTGAAT
1 TTTAGTCGAAT
8178923 TAATGCAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (16 bp):
TTTAGTCGAATATAAG
Found at i:8180647 original size:58 final size:58
Alignment explanation
Indices: 8180466--8180666 Score: 287
Period size: 58 Copynumber: 3.5 Consensus size: 58
8180456 TTTGTATAGG
* ** * *
8180466 AAAATTGATACTTTCAACTTTTTC-CCAAAATATTTTTTAGAAATTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAGCTTATTTTCAAGA
* *
8180523 AAAATTGATACTTTCAACTTTTTCTCAAAAATACTTTTTTGGAAAGCTTATCTTCAAGA
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTTAGAAAGCTTATTTTCAAGA
* * *
8180582 AAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTAGAAAGCTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAGCTTATTTTCAAGA
*
8180640 AAAATTGATACTTTTAACTTTTTCTCA
1 AAAATTGATACTTTCAACTTTTTCTCA
8180667 TTCTTCGAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
57 24 0.19
58 53 0.41
59 51 0.40
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.44
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAGCTTATTTTCAAGA
Found at i:8184579 original size:98 final size:98
Alignment explanation
Indices: 8184405--8184601 Score: 322
Period size: 98 Copynumber: 2.0 Consensus size: 98
8184395 TAGAGGTTAC
* * * * *
8184405 TAATTCCAAGTTGGGTTTCCATTATTGGTGTCTAATAGTAAGGGTTTAAATCTATTCTATTTGTA
1 TAATTCCAAGTTAGGTTCCCATTATTGGTGTCTAATAGTAACGGCTTAAATCCATTCTATTTGTA
* *
8184470 GTACTACTAACCAAATATTTTGGAATTCAATTT
66 ATACTACTAACCAAATATTTTGAAATTCAATTT
8184503 TAATTCCAAGTTAGGTTCCCATTATTGGTGTCTAATAGTAACGGCTTAAATCCATTCTATTTGTA
1 TAATTCCAAGTTAGGTTCCCATTATTGGTGTCTAATAGTAACGGCTTAAATCCATTCTATTTGTA
*
8184568 ATACTAGTAACCAAATATTTTGAAATTCAATTT
66 ATACTACTAACCAAATATTTTGAAATTCAATTT
8184601 T
1 T
8184602 CTTTTATGGT
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.42
Consensus pattern (98 bp):
TAATTCCAAGTTAGGTTCCCATTATTGGTGTCTAATAGTAACGGCTTAAATCCATTCTATTTGTA
ATACTACTAACCAAATATTTTGAAATTCAATTT
Found at i:8188081 original size:20 final size:21
Alignment explanation
Indices: 8188047--8188086 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8188037 AATATAAAAT
8188047 TTAAATTTATTTAT-CAATAA
1 TTAAATTTATTTATCCAATAA
8188067 TTAAATTT-TTCTATCCAATA
1 TTAAATTTATT-TATCCAATA
8188087 TGAGATGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 11 0.61
21 5 0.28
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (21 bp):
TTAAATTTATTTATCCAATAA
Found at i:8191432 original size:2 final size:2
Alignment explanation
Indices: 8191425--8191455 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8191415 TTGCTAGTGT
8191425 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8191456 TTGTTAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8192548 original size:23 final size:22
Alignment explanation
Indices: 8192515--8192563 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
8192505 TAACTTAAAA
8192515 AAAATTATAAATATTAAATTTT
1 AAAATTATAAATATTAAATTTT
**
8192537 AAAATTATTAAATATTATTTTTT
1 AAAATTA-TAAATATTAAATTTT
8192560 AAAA
1 AAAA
8192564 ATAATTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AAAATTATAAATATTAAATTTT
Found at i:8192682 original size:36 final size:36
Alignment explanation
Indices: 8192635--8192708 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
8192625 ATTGCTAGTT
8192635 ATATATATATATATATATATTTGTCAATATCAAACA
1 ATATATATATATATATATATTTGTCAATATCAAACA
8192671 ATATATATATATATATATATTTGTCAATATCAAACA
1 ATATATATATATATATATATTTGTCAATATCAAACA
8192707 AT
1 AT
8192709 CTTAAGTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (36 bp):
ATATATATATATATATATATTTGTCAATATCAAACA
Done.