Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 42 of 129
Found at i:8511505 original size:23 final size:24
Alignment explanation
Indices: 8511463--8511508 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
8511453 AATAATAAAA
8511463 ATAAATAAAAATAAACAAAATAAC
1 ATAAATAAAAATAAACAAAATAAC
8511487 ATAAAT-AAAATAAGA-AAAATAA
1 ATAAATAAAAATAA-ACAAAATAA
8511509 AATCAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.17
Consensus pattern (24 bp):
ATAAATAAAAATAAACAAAATAAC
Found at i:8512606 original size:66 final size:66
Alignment explanation
Indices: 8512536--8512704 Score: 191
Period size: 66 Copynumber: 2.6 Consensus size: 66
8512526 TTATGAGTTA
*
8512536 AAAAAAATAAAATGATCTGAACCGAGCCGAGATCAAAACTGAACGATCGAGATTGAACCGT-GAG
1 AAAAAAATAAAATGATCTGAACCGAGCCGAGATCAAAACTGAACGATCGAGATTGAACCATAG-G
8512600 TC
65 TC
* * * ** * *
8512602 AAAAAAATAAAATGATCTAAATCGAACCGAGATCAAAA-TGAGTGATCGGGATTGAACTATAGGT
1 AAAAAAATAAAATGATCTGAACCGAGCCGAGATCAAAACTGAACGATCGAGATTGAACCATAGGT
8512666 C
66 C
* * * * *
8512667 -TAAAAATAAAATGATTTGAACTGAGCTGAAATCAAAAC
1 AAAAAAATAAAATGATCTGAACCGAGCCGAGATCAAAAC
8512705 GAGTGATCAG
Statistics
Matches: 85, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
64 29 0.34
65 20 0.24
66 36 0.42
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (66 bp):
AAAAAAATAAAATGATCTGAACCGAGCCGAGATCAAAACTGAACGATCGAGATTGAACCATAGGT
C
Found at i:8512701 original size:64 final size:64
Alignment explanation
Indices: 8512538--8512785 Score: 225
Period size: 64 Copynumber: 3.8 Consensus size: 64
8512528 ATGAGTTAAA
* ** * *
8512538 AAAAATAAAATGATCTGAACCGAGCCGAGATCAAAACTGAACGATCGAGATTGAACCGT-GAGTC
1 AAAAATAAAATGATCTGAACTGAGCCGAGATCAAAA-TGAGTGATCGGGATTGAACCATAG-GTC
*
8512602 AA
64 -T
* * *
8512604 AAAAATAAAATGATCT-AAATCGAACCGAGATCAAAATGAGTGATCGGGATTGAACTATAGGTCT
1 AAAAATAAAATGATCTGAACT-GAGCCGAGATCAAAATGAGTGATCGGGATTGAACCATAGGTCT
* * * * * *
8512668 AAAAATAAAATGATTTGAACTGAGCTGAAATCAAAACGAGTGATCAGGG-TTGAACCACAGGTTT
1 AAAAATAAAATGATCTGAACTGAGCCGAGATCAAAATGAGTGATC-GGGATTGAACCATAGGTCT
* * ** * *
8512732 AAAAATAAAATGAT-TTAGACGGAGCCGAGATTGAAATGAGTGACCGAGATTGAA
1 AAAAATAAAATGATCTGA-ACTGAGCCGAGATCAAAATGAGTGATCGGGATTGAA
8512786 TCGCAATTCA
Statistics
Matches: 149, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
63 4 0.03
64 86 0.58
65 28 0.19
66 31 0.21
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (64 bp):
AAAAATAAAATGATCTGAACTGAGCCGAGATCAAAATGAGTGATCGGGATTGAACCATAGGTCT
Found at i:8514432 original size:11 final size:10
Alignment explanation
Indices: 8514410--8514442 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
8514400 ACCCCATCAA
8514410 TTTTTCTTTT
1 TTTTTCTTTT
*
8514420 TTTTCCTTTT
1 TTTTTCTTTT
8514430 TTTTTCTTTT
1 TTTTTCTTTT
8514440 TTT
1 TTT
8514443 CATCATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:8514451 original size:20 final size:20
Alignment explanation
Indices: 8514410--8514452 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
8514400 ACCCCATCAA
* *
8514410 TTTTTCTTTTTTTTCCTTTT
1 TTTTTCTTTTTTTTCATATT
8514430 TTTTTC-TTTTTTTCATCATT
1 TTTTTCTTTTTTTTCAT-ATT
8514450 TTT
1 TTT
8514453 CAAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTTTCTTTTTTTTCATATT
Found at i:8517272 original size:2 final size:2
Alignment explanation
Indices: 8517265--8517289 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8517255 CAACTGAATG
8517265 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8517290 AATGAATAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8518319 original size:23 final size:23
Alignment explanation
Indices: 8518280--8518343 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 23
8518270 TTTTTCAATT
*
8518280 TAAAATAAGAAATAATAAGAGTAAA
1 TAAAATAAGAAA-AATAACA-TAAA
8518305 -AAAATAA-ACAAAATAACATAAA
1 TAAAATAAGA-AAAATAACATAAA
8518327 TAAAATAAGAAAAATAA
1 TAAAATAAGAAAAATAA
8518344 AATCAAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
22 4 0.11
23 21 0.60
24 10 0.29
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.17
Consensus pattern (23 bp):
TAAAATAAGAAAAATAACATAAA
Found at i:8519715 original size:121 final size:121
Alignment explanation
Indices: 8519501--8519731 Score: 419
Period size: 121 Copynumber: 1.9 Consensus size: 121
8519491 AGCAAATAAA
8519501 AATTAAAGACAAATAAATGCAAGCAAGTGCAAACAATAACAAATAAGTGCATGTAACCCAATAGG
1 AATTAAAGACAAATAAATGCAAGCAAGTGCAAACAATAACAAATAAGTGCATGTAACCCAATAGG
*
8519566 TGCTGTGTATGATGATGAAATGCAAATTTAAAAATT-AGATTCTTATAAGTGCAAAC
66 TGCTATGTATGATGATGAAATGCAAATTTAAAAATTGA-ATTCTTATAAGTGCAAAC
**
8519622 AATTAAAGACAAATAAATGCAAGTGAGTGCAAACAATAACAAATAAGTGCATGTAACCCAATAGG
1 AATTAAAGACAAATAAATGCAAGCAAGTGCAAACAATAACAAATAAGTGCATGTAACCCAATAGG
8519687 TGCTATGTATGATGATGAAATGCAAATTTAAAAATTGAATTCTTA
66 TGCTATGTATGATGATGAAATGCAAATTTAAAAATTGAATTCTTA
8519732 AATATAATGA
Statistics
Matches: 106, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
121 105 0.99
122 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.26
Consensus pattern (121 bp):
AATTAAAGACAAATAAATGCAAGCAAGTGCAAACAATAACAAATAAGTGCATGTAACCCAATAGG
TGCTATGTATGATGATGAAATGCAAATTTAAAAATTGAATTCTTATAAGTGCAAAC
Found at i:8520083 original size:15 final size:15
Alignment explanation
Indices: 8520065--8520113 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
8520055 AAATTTGGGG
* *
8520065 TTTTAAAATTTTAGA
1 TTTTAAGATTTTGGA
8520080 TTTTAAGATTTTGGA
1 TTTTAAGATTTTGGA
*
8520095 TTTTAGGATTTTGGA
1 TTTTAAGATTTTGGA
8520110 TTTT
1 TTTT
8520114 GGGATTAGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (15 bp):
TTTTAAGATTTTGGA
Found at i:8520118 original size:15 final size:15
Alignment explanation
Indices: 8520072--8520119 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
8520062 GGGTTTTAAA
* *
8520072 ATTTTAGATTTTAAG
1 ATTTTGGATTTTAGG
8520087 ATTTTGGATTTTAGG
1 ATTTTGGATTTTAGG
*
8520102 ATTTTGGATTTTGGG
1 ATTTTGGATTTTAGG
8520117 ATT
1 ATT
8520120 AGGGTTTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (15 bp):
ATTTTGGATTTTAGG
Found at i:8520119 original size:8 final size:7
Alignment explanation
Indices: 8520072--8520115 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
8520062 GGGTTTTAAA
*
8520072 ATTTTAG
1 ATTTTGG
*
8520079 ATTTTAAG
1 ATTTT-GG
8520087 ATTTTGG
1 ATTTTGG
8520094 ATTTTAGG
1 ATTTT-GG
8520102 ATTTTGG
1 ATTTTGG
8520109 ATTTTGG
1 ATTTTGG
8520116 GATTAGGGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
7 20 0.59
8 14 0.41
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.55
Consensus pattern (7 bp):
ATTTTGG
Found at i:8520185 original size:29 final size:30
Alignment explanation
Indices: 8520139--8520220 Score: 71
Period size: 28 Copynumber: 2.8 Consensus size: 30
8520129 AGTTTCAAAT
* * *
8520139 TTTGG-GGTTTAAGTTTTTTATTTTTAGGG
1 TTTGGAGGTTTAGGGTTTTTATTTTTAAGG
* **
8520168 TTT-GAGGTTT-GGGGTTTTGGTTTTAAGG
1 TTTGGAGGTTTAGGGTTTTTATTTTTAAGG
* *
8520196 TTTGGATGTTTAGGGTTTTGATTTT
1 TTTGGAGGTTTAGGGTTTTTATTTT
8520221 AGGACTTAAG
Statistics
Matches: 39, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
28 16 0.41
29 14 0.36
30 9 0.23
ACGTcount: A:0.12, C:0.00, G:0.32, T:0.56
Consensus pattern (30 bp):
TTTGGAGGTTTAGGGTTTTTATTTTTAAGG
Found at i:8520221 original size:29 final size:28
Alignment explanation
Indices: 8520118--8520255 Score: 82
Period size: 29 Copynumber: 4.8 Consensus size: 28
8520108 GATTTTGGGA
* ** *
8520118 TTAGGGTTTTGAGTTTCAAATTTTGGGGT
1 TTAGGGTTTTGA-TTTTAAGGTTTGAGGT
* * * *
8520147 TTAAGTTTTTTATTTTTAGGGTTTGAGGT
1 TTAGGGTTTTGA-TTTTAAGGTTTGAGGT
* * *
8520176 TTGGGGTTTTGGTTTTAAGGTTTGGATGT
1 TTAGGGTTTTGATTTTAAGGTTT-GAGGT
* *
8520205 TTAGGGTTTTGATTTT-AGGACTTAAGGT
1 TTAGGGTTTTGATTTTAAGG-TTTGAGGT
**
8520233 TTAGAATTTT-AGTTTTAAGGTTT
1 TTAGGGTTTTGA-TTTTAAGGTTT
8520256 TAAGGATTTA
Statistics
Matches: 81, Mismatches: 24, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
27 1 0.01
28 30 0.37
29 50 0.62
ACGTcount: A:0.18, C:0.01, G:0.28, T:0.52
Consensus pattern (28 bp):
TTAGGGTTTTGATTTTAAGGTTTGAGGT
Found at i:8520223 original size:14 final size:14
Alignment explanation
Indices: 8520160--8520223 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 14
8520150 AGTTTTTTAT
8520160 TTTTAGGG-TTTGA
1 TTTTAGGGTTTTGA
* * *
8520173 GGTTTGGGGTTTTGG
1 -TTTTAGGGTTTTGA
* *
8520188 TTTTAAGGTTTGGA
1 TTTTAGGGTTTTGA
8520202 TGTTTAGGGTTTTGA
1 T-TTTAGGGTTTTGA
8520217 TTTTAGG
1 TTTTAGG
8520224 ACTTAAGGTT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
14 22 0.58
15 16 0.42
ACGTcount: A:0.12, C:0.00, G:0.36, T:0.52
Consensus pattern (14 bp):
TTTTAGGGTTTTGA
Found at i:8520455 original size:3 final size:3
Alignment explanation
Indices: 8520447--8520497 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
8520437 TTTATGAAAA
*
8520447 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8520495 ATT
1 ATT
8520498 TTAATTTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8520649 original size:15 final size:16
Alignment explanation
Indices: 8520617--8520656 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
8520607 TAGATTATTA
*
8520617 TTATTATTTTTTATTTT
1 TTATTA-TTTTCATTTT
8520634 TTATTATTTTCA-TTT
1 TTATTATTTTCATTTT
8520649 TTATTATT
1 TTATTATT
8520657 ATTAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.50
16 5 0.23
17 6 0.27
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (16 bp):
TTATTATTTTCATTTT
Found at i:8520751 original size:8 final size:8
Alignment explanation
Indices: 8520729--8520777 Score: 64
Period size: 8 Copynumber: 6.1 Consensus size: 8
8520719 AATAAAACTA
8520729 AAAATAAT
1 AAAATAAT
8520737 AAATATAAT
1 AAA-ATAAT
* *
8520746 AATATAAA
1 AAAATAAT
8520754 AAAATAAT
1 AAAATAAT
8520762 AAAATAAT
1 AAAATAAT
8520770 AAAA-AAT
1 AAAATAAT
8520777 A
1 A
8520778 CCTGAACCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
7 4 0.11
8 25 0.69
9 7 0.19
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATAAT
Found at i:8520762 original size:21 final size:23
Alignment explanation
Indices: 8520717--8520777 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 23
8520707 ATGACTATTA
*
8520717 AAAATAAAACTAAAAATAATAAAT
1 AAAATAATA-TAAAAATAATAAAT
*
8520741 ATAATAATATAAAAA-AAT-AAT
1 AAAATAATATAAAAATAATAAAT
8520762 AAAATAATA-AAAAATA
1 AAAATAATATAAAAATA
8520778 CCTGAACCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
20 5 0.15
21 12 0.36
22 3 0.09
23 6 0.18
24 7 0.21
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (23 bp):
AAAATAATATAAAAATAATAAAT
Found at i:8530577 original size:13 final size:13
Alignment explanation
Indices: 8530561--8530599 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8530551 AATGAGTAAA
*
8530561 TAAAAATTAAAAT
1 TAAAAATTAAAAC
*
8530574 TAAAAATCAAAAC
1 TAAAAATTAAAAC
8530587 TAATAAATTAAAA
1 TAA-AAATTAAAA
8530600 GATTTCATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 14 0.64
14 8 0.36
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (13 bp):
TAAAAATTAAAAC
Found at i:8537474 original size:12 final size:13
Alignment explanation
Indices: 8537455--8537495 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
8537445 ATTTATCTTT
8537455 TATATAATATAAA
1 TATATAATATAAA
*
8537468 T-TATAATATATA
1 TATATAATATAAA
8537480 TATATAA-AT-AA
1 TATATAATATAAA
8537491 TATAT
1 TATAT
8537496 TTTAAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 6 0.24
12 13 0.52
13 6 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TATATAATATAAA
Found at i:8537608 original size:4 final size:4
Alignment explanation
Indices: 8537594--8537654 Score: 61
Period size: 4 Copynumber: 15.5 Consensus size: 4
8537584 TATATTGTTG
* * * * *
8537594 ATCT A-CT ATCT ATCT ATCT ATCT ATCT ATAT ATAT ATAT ATAT ATAT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT
*
8537641 ATAT ATCT ATCT AT
1 ATCT ATCT ATCT AT
8537655 ATATATATAT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
3 3 0.06
4 51 0.94
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (4 bp):
ATCT
Found at i:8537627 original size:2 final size:2
Alignment explanation
Indices: 8537620--8537664 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
8537610 TCTATCTATC
* *
8537620 TA TA TA TA TA TA TA TA TA TA TA TA TA TC TA TC TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8537662 TA T
1 TA T
8537665 TAGTTAGTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8538393 original size:40 final size:40
Alignment explanation
Indices: 8538338--8538418 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
8538328 ACAAGATAGC
*
8538338 AACAGATAAAAGCACTAAACTCTTTTATGGCTAGATTTAA
1 AACAGATAAAAGCACTAAACACTTTTATGGCTAGATTTAA
* *
8538378 AACAGATAAAAGCACTTAACACTTTTATGGCTAGTTTTAA
1 AACAGATAAAAGCACTAAACACTTTTATGGCTAGATTTAA
8538418 A
1 A
8538419 CGTTCTCACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (40 bp):
AACAGATAAAAGCACTAAACACTTTTATGGCTAGATTTAA
Found at i:8541966 original size:2 final size:2
Alignment explanation
Indices: 8541954--8542002 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
8541944 GTGAAACAAA
8541954 AG AG A- AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
8541995 AT AG AG AG
1 AG AG AG AG
8542003 GGAGTAGCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.47, T:0.02
Consensus pattern (2 bp):
AG
Found at i:8542405 original size:60 final size:60
Alignment explanation
Indices: 8542338--8542511 Score: 217
Period size: 60 Copynumber: 2.9 Consensus size: 60
8542328 TGATTCTCTT
* *
8542338 AAAATAAAAATTTCAAAAAAAATATTTTTGAGAAAAAATTGAAAGCATTAATTTTTTTAA
1 AAAATAAAAATTTCAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATTAATTTTTTTAA
* * * * * *
8542398 AAAATAAAGATTCCAAAAAATATATTTTCGAGGAAAAGTTGAAAGTATTAATTTTTTTTA
1 AAAATAAAAATTTCAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATTAATTTTTTTAA
* * * * *
8542458 AATA-AAAAATTT-ATAAAAAGTATTTTTGAGGAAAAATTAAAAGTATCAATTTTT
1 AAAATAAAAATTTCAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATTAATTTTT
8542512 CTTGAAAATG
Statistics
Matches: 96, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
58 35 0.36
59 6 0.06
60 55 0.57
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.36
Consensus pattern (60 bp):
AAAATAAAAATTTCAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATTAATTTTTTTAA
Found at i:8542420 original size:58 final size:55
Alignment explanation
Indices: 8542336--8542511 Score: 181
Period size: 58 Copynumber: 3.0 Consensus size: 55
8542326 AGTGATTCTC
* * *
8542336 TTAAAATAAAAATTTCAAAAAAAATATTTTTGAGAAAAAATTGAAAGCATTAATTTTT
1 TTAAAA-AAAAAATTC--AAAAAATATTTTTGAGGAAAAATTGAAAGTATTAATTTTT
*
8542394 TTAAAAAATAAAGATTCCAAAAAATATATTTTCGAGGAAAAGTTGAAAGTATTAATTTTTT
1 TTAAAAAA-AAA-ATT-CAAAAAATAT-TTTT-GAGGAAAAATTGAAAGTATTAA-TTTTT
* * * *
8542455 TTAAATAAAAAATTTATAAAAAGTATTTTTGAGGAAAAATTAAAAGTATCAATTTTT
1 TTAAAAAAAAAATTCA-AAAAA-TATTTTTGAGGAAAAATTGAAAGTATTAATTTTT
8542512 CTTGAAAATG
Statistics
Matches: 101, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
57 7 0.07
58 38 0.38
59 18 0.18
60 26 0.26
61 12 0.12
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (55 bp):
TTAAAAAAAAAATTCAAAAAATATTTTTGAGGAAAAATTGAAAGTATTAATTTTT
Found at i:8542527 original size:76 final size:77
Alignment explanation
Indices: 8542447--8542602 Score: 214
Period size: 76 Copynumber: 2.1 Consensus size: 77
8542437 TGAAAGTATT
8542447 AATTTTTTTTAAATAAA-AA-ATTT-ATAAAAAGTATTTTTGAGGAAAAATTAAAAGTATCAATT
1 AATTTTTTTTAAA-AAAGAAGATTTCA-AAAAAGTATTTTTGAGGAAAAATTAAAAGTATCAATT
* *
8542509 -TTTCTTGAAAATGA
64 ATCT-TTGAAAATAA
* *
8542523 AA-TTTTTTTAAAAAAGAAGATTTCAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTAT
1 AATTTTTTTTAAAAAAGAAGATTTCAAAAAAGTATTTTTGAGGAAAAATTAAAAGTATCAATTAT
8542587 CTTTGAAAATAA
66 CTTTGAAAATAA
8542599 AATT
1 AATT
8542603 AAAAAGAAAA
Statistics
Matches: 71, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
74 3 0.04
75 12 0.17
76 52 0.73
77 4 0.06
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.38
Consensus pattern (77 bp):
AATTTTTTTTAAAAAAGAAGATTTCAAAAAAGTATTTTTGAGGAAAAATTAAAAGTATCAATTAT
CTTTGAAAATAA
Found at i:8542550 original size:135 final size:135
Alignment explanation
Indices: 8542387--8542662 Score: 353
Period size: 135 Copynumber: 2.0 Consensus size: 135
8542377 TGAAAGCATT
*
8542387 AATTTTTTTAAAAAATAAAGATTCCAAAAAA-TATATTTTCGAGGAAAAGTTGAAAGTATTAATT
1 AATTTTTTTAAAAAATAAAGATTCCAAAAAAGTAT-TTTT-GAGGAAAAGTTGAAAGTATCAATT
* * * * ** * *
8542451 -TTTTTTAAATAAAAAATTTATAA-AAAGTATTTTTGAGGAAAAATTAAAAGTATCAATTTTTCT
64 ATCTTTGAAA-AAAAAATTAAAAAGAAAACAATTTTAAGGAAAAATTAAAAGTATCAATTTTTCT
*
8542514 TGAAAATGA
128 TG-AAATAA
* *
8542523 AATTTTTTTAAAAAA-GAAGATTTCAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTAT
1 AATTTTTTTAAAAAATAAAGATTCCAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTAT
* * *
8542587 CTTTGAAAATAAAATTAAAAAGAAAACAATTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGA
66 CTTTGAAAAAAAAATTAAAAAGAAAACAATTTTAAGGAAAAATTAAAAGTATCAATTTTTCTTGA
8542652 AATAA
131 AATAA
8542657 AATTTT
1 AATTTT
8542663 CAAAAAAATA
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
134 44 0.36
135 60 0.49
136 18 0.15
ACGTcount: A:0.48, C:0.04, G:0.11, T:0.37
Consensus pattern (135 bp):
AATTTTTTTAAAAAATAAAGATTCCAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTAT
CTTTGAAAAAAAAATTAAAAAGAAAACAATTTTAAGGAAAAATTAAAAGTATCAATTTTTCTTGA
AATAA
Found at i:8542693 original size:58 final size:56
Alignment explanation
Indices: 8542542--8542726 Score: 185
Period size: 59 Copynumber: 3.2 Consensus size: 56
8542532 AAAAAAGAAG
* * *
8542542 ATTTCAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAA-TTATCTTTGAAAATAAA
1 ATTTCAAAAAAATATTTTTGA-AAAAAGTTGAAAGTATCAATTTTTC-TTG-AAATAAA
** * *
8542600 ATTAAAAAGAAAACAATTTT-AAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAATAAA
1 ATTTCAAA-AAAATATTTTTGAA--AAAAGTTGAAAGTATCAATTTTTCTTGAAATAAA
* *
8542658 ATTTTCAAAAAAATATTTTTGAAAAAATGTTGAAAGTATCAATTTTTTTTTAAAATAAAA
1 A-TTTCAAAAAAATATTTTTGAAAAAA-GTTGAAAGTATCAA-TTTTTCTTGAAAT-AAA
8542718 ATTTCAAAA
1 ATTTCAAAA
8542727 TGCTTTTAAA
Statistics
Matches: 105, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
57 4 0.04
58 38 0.36
59 55 0.52
60 8 0.08
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (56 bp):
ATTTCAAAAAAATATTTTTGAAAAAAGTTGAAAGTATCAATTTTTCTTGAAATAAA
Found at i:8546701 original size:14 final size:13
Alignment explanation
Indices: 8546684--8546728 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
8546674 AATGAAAATG
*
8546684 AAAAGAAAAAGGA
1 AAAAGAAAAAAGA
*
8546697 AAAAAAAATAAAGA
1 AAAAGAAA-AAAGA
*
8546711 AAAGGAAAAAAGA
1 AAAAGAAAAAAGA
8546724 AAAAG
1 AAAAG
8546729 TGAAAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
13 16 0.62
14 10 0.38
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAAAGA
Found at i:8546701 original size:20 final size:18
Alignment explanation
Indices: 8546678--8546726 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
8546668 AGAAAAAATG
*
8546678 AAAATGAAAAGAAAAAGGAA
1 AAAAAGAAAAG-AAAAGG-A
*
8546698 AAAAAAATAAAGAAAAGGA
1 AAAAAGA-AAAGAAAAGGA
8546717 AAAAAGAAAA
1 AAAAAGAAAA
8546727 AGTGAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
18 3 0.12
19 7 0.28
20 11 0.44
21 4 0.16
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (18 bp):
AAAAAGAAAAGAAAAGGA
Found at i:8547994 original size:34 final size:34
Alignment explanation
Indices: 8547938--8548098 Score: 144
Period size: 34 Copynumber: 4.7 Consensus size: 34
8547928 CTCCAATATA
* * *
8547938 AAAATCTCACGAATCTTTAATTCTTACAAATTTG
1 AAAATCTTACGAATCTTCAATTCTTACGAATTTG
** * * * *
8547972 AATGTTTTGCGAATCTTCAATTCTTATGAATCTG
1 AAAATCTTACGAATCTTCAATTCTTACGAATTTG
* *
8548006 AAAATCTTACGAATCTTCGATTCTTACGAATTTA
1 AAAATCTTACGAATCTTCAATTCTTACGAATTTG
* * * *
8548040 AAAATCTTATGAAT-TTCTAATTCTTGCGAATCTA
1 AAAATCTTACGAATCTTC-AATTCTTACGAATTTG
* * *
8548074 AAAATCTCATGAATCTTTAATTCTT
1 AAAATCTTACGAATCTTCAATTCTT
8548099 GTGAATCTAA
Statistics
Matches: 102, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
33 3 0.03
34 97 0.95
35 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (34 bp):
AAAATCTTACGAATCTTCAATTCTTACGAATTTG
Found at i:8548004 original size:17 final size:17
Alignment explanation
Indices: 8547982--8548121 Score: 86
Period size: 17 Copynumber: 8.2 Consensus size: 17
8547972 AATGTTTTGC
*
8547982 GAATCTTCAATTCTTAT
1 GAATCTTAAATTCTTAT
* * *
8547999 GAATCTGAAAATCTTAC
1 GAATCTTAAATTCTTAT
** *
8548016 GAATCTTCGATTCTTAC
1 GAATCTTAAATTCTTAT
*
8548033 GAAT-TTAAAAATCTTAT
1 GAATCTT-AAATTCTTAT
* **
8548050 GAAT-TTCTAATTCTTGC
1 GAATCTT-AAATTCTTAT
* * *
8548067 GAATCTAAAAATCTCAT
1 GAATCTTAAATTCTTAT
* *
8548084 GAATCTTTAATTCTTGT
1 GAATCTTAAATTCTTAT
* *
8548101 GAATCTAAAATTCTTGT
1 GAATCTTAAATTCTTAT
8548118 GAAT
1 GAAT
8548122 TTTTGAATTC
Statistics
Matches: 91, Mismatches: 30, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
16 2 0.02
17 88 0.97
18 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (17 bp):
GAATCTTAAATTCTTAT
Found at i:8548018 original size:68 final size:68
Alignment explanation
Indices: 8547936--8548098 Score: 184
Period size: 68 Copynumber: 2.4 Consensus size: 68
8547926 ATCTCCAATA
* ** * * *
8547936 TAAAAATCTCACGAATCTTTAATTCTTACAAATTTGAATGTTTTGCGAATCTTC-AATTCTTATG
1 TAAAAATCTCACGAATCTTTAATTCTTACAAATTTAAAAATCTTACGAAT-TTCTAATTCTTACG
8548000 AATC
65 AATC
* * ** * * *
8548004 TGAAAATCTTACGAATCTTCGATTCTTACGAATTTAAAAATCTTATGAATTTCTAATTCTTGCGA
1 TAAAAATCTCACGAATCTTTAATTCTTACAAATTTAAAAATCTTACGAATTTCTAATTCTTACGA
8548069 ATC
66 ATC
*
8548072 TAAAAATCTCATGAATCTTTAATTCTT
1 TAAAAATCTCACGAATCTTTAATTCTT
8548099 GTGAATCTAA
Statistics
Matches: 76, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
67 3 0.04
68 73 0.96
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (68 bp):
TAAAAATCTCACGAATCTTTAATTCTTACAAATTTAAAAATCTTACGAATTTCTAATTCTTACGA
ATC
Found at i:8548099 original size:34 final size:34
Alignment explanation
Indices: 8547982--8548140 Score: 160
Period size: 34 Copynumber: 4.7 Consensus size: 34
8547972 AATGTTTTGC
* ** * *
8547982 GAATCTTCAATTCTTATGAATCTGAAAATCTTAC
1 GAATCTTTAATTCTTGCGAATCTAAAAATCTTAT
** * *
8548016 GAATCTTCGATTCTTACGAATTTAAAAATCTTAT
1 GAATCTTTAATTCTTGCGAATCTAAAAATCTTAT
*
8548050 GAAT-TTCTAATTCTTGCGAATCTAAAAATCTCAT
1 GAATCTT-TAATTCTTGCGAATCTAAAAATCTTAT
* * *
8548084 GAATCTTTAATTCTTGTGAATCTAAAATTCTTGT
1 GAATCTTTAATTCTTGCGAATCTAAAAATCTTAT
*
8548118 GAATTTTTGAATTC-TGCGAATCT
1 GAATCTTT-AATTCTTGCGAATCT
8548141 TTGAATTGCA
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
33 2 0.02
34 97 0.92
35 7 0.07
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (34 bp):
GAATCTTTAATTCTTGCGAATCTAAAAATCTTAT
Found at i:8548110 original size:68 final size:68
Alignment explanation
Indices: 8547936--8548140 Score: 180
Period size: 68 Copynumber: 3.0 Consensus size: 68
8547926 ATCTCCAATA
* * * * ** * ** **
8547936 TAAAAATCTCACGAATCTTTAATTCTTACAAATTTGAATGTTTTGCGAATCTTC-AATTCTTATG
1 TAAAAATCTCACGAATCTTCAATTCTTACGAATCTAAAAATCTTATGAAT-TTCTAATTCTTGCG
8548000 AATC
65 AATC
* * * *
8548004 TGAAAATCTTACGAATCTTCGATTCTTACGAATTTAAAAATCTTATGAATTTCTAATTCTTGCGA
1 TAAAAATCTCACGAATCTTCAATTCTTACGAATCTAAAAATCTTATGAATTTCTAATTCTTGCGA
8548069 ATC
66 ATC
* * ** * * *
8548072 TAAAAATCTCATGAATCTTTAATTCTTGTGAATCTAAAATTCTTGTGAATTTTTGAATTC-TGCG
1 TAAAAATCTCACGAATCTTCAATTCTTACGAATCTAAAAATCTTATGAATTTCT-AATTCTTGCG
8548136 AATC
65 AATC
8548140 T
1 T
8548141 TTGAATTGCA
Statistics
Matches: 111, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
67 3 0.03
68 103 0.93
69 5 0.05
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (68 bp):
TAAAAATCTCACGAATCTTCAATTCTTACGAATCTAAAAATCTTATGAATTTCTAATTCTTGCGA
ATC
Found at i:8548410 original size:86 final size:86
Alignment explanation
Indices: 8548302--8548697 Score: 387
Period size: 86 Copynumber: 4.7 Consensus size: 86
8548292 TTGTAATGTC
* * * * * *
8548302 AGACTTTGGTTCAATCCAGGTCATCTTATTTTCAAATTTCGGCTTGTGTCAGATCCTTTTTTGGC
1 AGACTTTGGTTCAATCCAGGTCATTTTATTTTCAAATTTTGACTTATGTCAAATCCTTCTTTGGC
8548367 TCAATCCAGGTTATTCATTTT
66 TCAATCCAGGTTATTCATTTT
** * * *
8548388 AGACTTAAGTTCAATGCAGGTCATTTTATTTTCAAATTTTAACTTATGTTAAATCCTTCTTTGGC
1 AGACTTTGGTTCAATCCAGGTCATTTTATTTTCAAATTTTGACTTATGTCAAATCCTTCTTTGGC
*
8548453 TCAATCCAAGG-TA-TCAATTTA
66 TCAATCC-AGGTTATTC-ATTTT
* * * * ***
8548474 AGGCTTTGGTTCAATCTAAG-CATTTTGTTTTTGGATTTTGACTTATGTCAAATCCTTCTTTGGC
1 AGACTTTGGTTCAATCCAGGTCATTTTATTTTCAAATTTTGACTTATGTCAAATCCTTCTTTGGC
* * *
8548538 TTAGTCTAGGTTATTCATTTT
66 TCAATCCAGGTTATTCATTTT
* ** **
8548559 AGACTTTGGTTCAATCCAGGTCATTTT-TTCTTC-GA-TTTGACTTATGTCAAATATTTCTTCAG
1 AGACTTTGGTTCAATCCAGGTCATTTTATT-TTCAAATTTTGACTTATGTCAAATCCTTCTTTGG
* *
8548621 CTCAGTCCAAGTTATTCATTTT
65 CTCAATCCAGGTTATTCATTTT
* * * *
8548643 AGA-TTATGGTTCAATCC-GAGTTATTTTATGTT-GAATTTTGACTTATGTCAGATCC
1 AGACTT-TGGTTCAATCCAG-GTCATTTTATTTTCAAATTTTGACTTATGTCAAATCC
8548698 ATTTTCAGGT
Statistics
Matches: 254, Mismatches: 45, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
83 3 0.01
84 69 0.27
85 88 0.35
86 91 0.36
87 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.45
Consensus pattern (86 bp):
AGACTTTGGTTCAATCCAGGTCATTTTATTTTCAAATTTTGACTTATGTCAAATCCTTCTTTGGC
TCAATCCAGGTTATTCATTTT
Found at i:8548530 original size:85 final size:85
Alignment explanation
Indices: 8548302--8548697 Score: 306
Period size: 85 Copynumber: 4.6 Consensus size: 85
8548292 TTGTAATGTC
* * * * * * * *
8548302 AGACTTTGGTTCAATCCAGGTCATCTTATT-TTCAAATTTCGGCTTGTGTCAGATCCTTTTTTGG
1 AGACTTTGGTTCAATCCAAGTCAT-TTTTTCTTC-GATTTTGACTTATGTCAAATCCTTCTTTGG
* *
8548366 CTCAATCCAGGTTATTCATTTT
64 CTCAATCAAGGTTATTCATTTA
** * * * * *
8548388 AGACTTAAGTTCAATGCAGGTCATTTTATT-TTCAAATTTTAACTTATGTTAAATCCTTCTTTGG
1 AGACTTTGGTTCAATCCAAGTCATTTT-TTCTTC-GATTTTGACTTATGTCAAATCCTTCTTTGG
8548452 CTCAATCCAAGG-TA-TCAATTTA
64 CTCAAT-CAAGGTTATTC-ATTTA
* * * *
8548474 AGGCTTTGGTTCAATCTAAG-CATTTTGTTTTTGGATTTTGACTTATGTCAAATCCTTCTTTGGC
1 AGACTTTGGTTCAATCCAAGTCATTTT-TTCTTCGATTTTGACTTATGTCAAATCCTTCTTTGGC
* * * *
8548538 TTAGTCTAGGTTATTCATTTT
65 TCAATCAAGGTTATTCATTTA
* ** **
8548559 AGACTTTGGTTCAATCCAGGTCATTTTTTCTTCGA-TTTGACTTATGTCAAATATTTCTTCAGCT
1 AGACTTTGGTTCAATCCAAGTCATTTTTTCTTCGATTTTGACTTATGTCAAATCCTTCTTTGGCT
* *
8548623 CAGTCCAA-GTTATTCATTTT
66 CAAT-CAAGGTTATTCATTTA
* * * * *
8548643 AGA-TTATGGTTCAATCCGAGTTATTTTATGTT-GAATTTTGACTTATGTCAGATCC
1 AGACTT-TGGTTCAATCCAAGTCATTTTTTCTTCG-ATTTTGACTTATGTCAAATCC
8548698 ATTTTCAGGT
Statistics
Matches: 252, Mismatches: 47, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
83 3 0.01
84 69 0.27
85 90 0.36
86 86 0.34
87 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.45
Consensus pattern (85 bp):
AGACTTTGGTTCAATCCAAGTCATTTTTTCTTCGATTTTGACTTATGTCAAATCCTTCTTTGGCT
CAATCAAGGTTATTCATTTA
Found at i:8549890 original size:60 final size:60
Alignment explanation
Indices: 8549772--8549884 Score: 176
Period size: 60 Copynumber: 1.9 Consensus size: 60
8549762 AAAAAAAAAA
* *
8549772 TATTTTTGAGGAAAAGTTGAAATTATCAATTTTTCTTAAAAATAAAGATTCTAAAAAAGG
1 TATTTTCGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAGATTCTAAAAAAGG
* *
8549832 TATTTTCGAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAAATAAA-ATT-TAAA
1 TATTTTCGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAGATTCTAAA
8549885 GAAAAGAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
58 4 0.08
59 3 0.06
60 42 0.86
ACGTcount: A:0.44, C:0.04, G:0.13, T:0.38
Consensus pattern (60 bp):
TATTTTCGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAGATTCTAAAAAAGG
Found at i:8549920 original size:74 final size:75
Alignment explanation
Indices: 8549832--8549972 Score: 205
Period size: 74 Copynumber: 1.9 Consensus size: 75
8549822 CTAAAAAAGG
* * * *
8549832 TATTTTCGAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAAATAAAA-TTT-AAAGAAAAGAATA
1 TATTTTCGACGAAAAGTTGAAAGTATCAATTATCTTTGAAAATAAAATTTTCAAA-AAAAAAATA
8549895 TTTCAAAAAAC
65 TTTCAAAAAAC
* *
8549906 TATTTTTGACGAAAATTTGAAAGTATCAATTATCTTTGAAAATAAAATTTTCAAAAAAAAAATAT
1 TATTTTCGACGAAAAGTTGAAAGTATCAATTATCTTTGAAAATAAAATTTTCAAAAAAAAAATAT
8549971 TT
66 TT
8549973 TTAAGGAAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
74 42 0.71
75 14 0.24
76 3 0.05
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (75 bp):
TATTTTCGACGAAAAGTTGAAAGTATCAATTATCTTTGAAAATAAAATTTTCAAAAAAAAAATAT
TTCAAAAAAC
Found at i:8549972 original size:62 final size:59
Alignment explanation
Indices: 8549895--8550119 Score: 280
Period size: 62 Copynumber: 3.8 Consensus size: 59
8549885 GAAAAGAATA
* * * *
8549895 TTTC-AAAAAACTATTTTTGACGAAAATTTGAAAGTATCAATTATCTTTGAAAATAAAAT
1 TTTCAAAAAAAC-ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAAT
* * * *
8549954 TTTCAAAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTGTCAATTTTCCTTGAAAATAAAAA
1 TTTC---AAAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAAT
8550016 TTTC--AAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTG-AAATAAAAT
1 TTTCAAAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAAT
*
8550072 TTTCAAAAAAGCATTTTTGAA-GAAAAGTTGAAAGTATCAAATTTTCTT
1 TTTCAAAAAAACATTTTT-AAGGAAAAGTTGAAAGTATC-AATTTTCTT
8550120 GTATAAATGT
Statistics
Matches: 145, Mismatches: 13, Indels: 16
0.83 0.07 0.09
Matches are distributed among these distances:
56 12 0.08
57 40 0.28
58 28 0.19
59 15 0.10
62 44 0.30
63 6 0.04
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.36
Consensus pattern (59 bp):
TTTCAAAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAAT
Found at i:8550008 original size:136 final size:134
Alignment explanation
Indices: 8549765--8550014 Score: 324
Period size: 136 Copynumber: 1.9 Consensus size: 134
8549755 AATTTCAAAA
* * * *
8549765 AAAAAAATATTTTTGAGGAAAAGTTGAAATTATCAATTTTTCTTAAAAATAAAGATTCTAAAAAA
1 AAAAAAATATTTTTGACGAAAAGTTGAAAGTATCAATTTCTCTTAAAAATAAAGATTCAAAAAAA
** * **
8549830 GGTATTTTCGAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAAATAAAATTTAAAGAAAAGAATA
66 AATATTTTCAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTAAAGAAAAGAATA
8549895 TTTC
131 TTTC
* * *
8549899 AAAAAACTATTTTTGACGAAAATTTGAAAGTATCAATTATCT-TTGAAAATAAA-ATTTTCAAAA
1 AAAAAAATATTTTTGACGAAAAGTTGAAAGTATCAATT-TCTCTTAAAAATAAAGA--TTC-AAA
* *
8549962 AAAAAATATTTTTAAGGAAAAGTTGAAAGTGTCAATTTTCCTTGAAAATAAAA
62 AAAAAATATTTTCAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
8550015 ATTTCAAAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
133 1 0.01
134 44 0.45
135 5 0.05
136 48 0.49
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.34
Consensus pattern (134 bp):
AAAAAAATATTTTTGACGAAAAGTTGAAAGTATCAATTTCTCTTAAAAATAAAGATTCAAAAAAA
AATATTTTCAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTAAAGAAAAGAATA
TTTC
Found at i:8550037 original size:57 final size:58
Alignment explanation
Indices: 8549894--8550119 Score: 278
Period size: 57 Copynumber: 3.8 Consensus size: 58
8549884 AGAAAAGAAT
* * * *
8549894 ATTTCAAAAAACTATTTTTGACGAAAATTTGAAAGTATCAATTATCTTTGAAAATAAAA
1 ATTTCAAAAAAC-ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAA
* * * *
8549953 TTTTCAAAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTGTCAATTTTCCTTGAAAATAAAA
1 ATTTC----AAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAA
8550015 ATTTC-AAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTG-AAATAAAA
1 ATTTCAAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAA
*
8550071 TTTTCAAAAAAGCATTTTTGAA-GAAAAGTTGAAAGTATCAAATTTTCTT
1 ATTTCAAAAAA-CATTTTT-AAGGAAAAGTTGAAAGTATC-AATTTTCTT
8550120 GTATAAATGT
Statistics
Matches: 146, Mismatches: 13, Indels: 16
0.83 0.07 0.09
Matches are distributed among these distances:
56 12 0.08
57 45 0.31
58 24 0.16
59 15 0.10
62 44 0.30
63 6 0.04
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.36
Consensus pattern (58 bp):
ATTTCAAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAA
Found at i:8550137 original size:119 final size:121
Alignment explanation
Indices: 8549894--8550117 Score: 325
Period size: 119 Copynumber: 1.9 Consensus size: 121
8549884 AGAAAAGAAT
* *
8549894 ATTTCAAAAAACTATTTTTGACGAAAATTTGAAAGTATCAATTATCTTTGAAAATAAAATTTTCA
1 ATTTCAAAAAACTATTTTTAACGAAAAGTTGAAAGTATCAATTATCTTTGAAAATAAAATTTTCA
* *
8549959 AAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTGTCAATTTTCCTTGAAAATAAAA
66 AAAAAAAAATATTTTGAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
* *
8550015 ATTTC-AAAAAC-ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTG-AAATAAAATTTTC-
1 ATTTCAAAAAACTATTTTTAACGAAAAGTTGAAAGTATCAATTATCTTTGAAAATAAAATTTTCA
**
8550076 AAAAAAGCAT-TTTTGAA-GAAAAGTTGAAAGTATCAAATTTTC
66 AAAAAAAAATATTTTGAAGGAAAAGTTGAAAGTATC-AATTTTC
8550118 TTGTATAAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
115 16 0.17
116 13 0.14
117 8 0.09
118 13 0.14
119 33 0.35
120 6 0.06
121 5 0.05
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (121 bp):
ATTTCAAAAAACTATTTTTAACGAAAAGTTGAAAGTATCAATTATCTTTGAAAATAAAATTTTCA
AAAAAAAAATATTTTGAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
Found at i:8553168 original size:31 final size:31
Alignment explanation
Indices: 8553130--8553195 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
8553120 TCATAATAGA
8553130 AGCTAGCTAACTATATATAGTGTTAGAAAAT
1 AGCTAGCTAACTATATATAGTGTTAGAAAAT
*
8553161 AGCTAGCTAGCTATATATAGTGTTAGAAAAT
1 AGCTAGCTAACTATATATAGTGTTAGAAAAT
8553192 -GCTA
1 AGCTA
8553196 ACTCTTATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 4 0.12
31 30 0.88
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (31 bp):
AGCTAGCTAACTATATATAGTGTTAGAAAAT
Found at i:8553635 original size:15 final size:15
Alignment explanation
Indices: 8553615--8553645 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8553605 TTTATGCCTT
8553615 TATATATATATTAAA
1 TATATATATATTAAA
8553630 TATATATATATTAAA
1 TATATATATATTAAA
8553645 T
1 T
8553646 TACTAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATATATATTAAA
Found at i:8556474 original size:15 final size:15
Alignment explanation
Indices: 8556439--8556476 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
8556429 TCTCGTTCGA
8556439 TTATTTTTATTATTT
1 TTATTTTTATTATTT
8556454 TATATTTTTA-TATTT
1 T-TATTTTTATTATTT
8556469 GTTATTTT
1 -TTATTTT
8556477 AATAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTATTTTTATTATTT
Found at i:8556835 original size:16 final size:16
Alignment explanation
Indices: 8556816--8556852 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
8556806 CATTAAAAGT
8556816 TTTATTACTATTATTA
1 TTTATTACTATTATTA
* *
8556832 TTTATTATTATTGTTA
1 TTTATTACTATTATTA
8556848 TTTAT
1 TTTAT
8556853 CTTATTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTATTACTATTATTA
Found at i:8559012 original size:143 final size:145
Alignment explanation
Indices: 8558672--8559012 Score: 384
Period size: 146 Copynumber: 2.4 Consensus size: 145
8558662 TTTTAAAGTG
*
8558672 CCAAAAATCATGAAATATTATGAAATTGAGATTTGAAAAGTTTCATGAAAATTTGAGCTTAGAAA
1 CCAAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTCATGAAAATTTGAGCTTAGAAA
* * ** *
8558737 AGTTAAATTACAAAAATACCCCTATACGGGGTATTTTAGCAATTTGACACATCCTAGGGTACTGC
66 AGTCAAATTACAAAAATACACCTATAC-AAGTATTTTAGCAATTTGACACATCCTAGGGTACTAC
8558802 TGTAATTTCAAATACA
130 TGTAATTTCAAATACA
* * * ** * *
8558818 CAAAAAATCATGAGATATTATGAAATTGAGATGTGAAAAGTTTTGTAAAAATTTGAGGTCTAG-A
1 CCAAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTCATGAAAATTTGAGCT-TAGAA
* * * * * ** *
8558882 AGGTCAAATTACGAAAATACATCTATA-AAGTATTTT-GATAATTTTACAC-TTTTCGGGTACTA
65 AAGTCAAATTACAAAAATACACCTATACAAGTATTTTAG-CAATTTGACACATCCTAGGGTACTA
* *
8558944 CTGTGATTTCAAATGCA
129 CTGTAATTTCAAATACA
* ** *
8558961 CCAAAAATCATAAAATATTACAAAATTGAGATCTAAAAAGTTTCATGAAAAT
1 CCAAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTCATGAAAAT
8559013 CCAAACTCGA
Statistics
Matches: 161, Mismatches: 32, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
143 67 0.42
144 16 0.10
146 75 0.47
147 3 0.02
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.32
Consensus pattern (145 bp):
CCAAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTCATGAAAATTTGAGCTTAGAAA
AGTCAAATTACAAAAATACACCTATACAAGTATTTTAGCAATTTGACACATCCTAGGGTACTACT
GTAATTTCAAATACA
Found at i:8559542 original size:16 final size:16
Alignment explanation
Indices: 8559523--8559557 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8559513 TTTGTTTATT
8559523 TTTTGTT-CTTGTTTTG
1 TTTTGTTACTT-TTTTG
8559539 TTTTGTTACTTTTTTG
1 TTTTGTTACTTTTTTG
8559555 TTT
1 TTT
8559558 GGACAACATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.03, C:0.06, G:0.14, T:0.77
Consensus pattern (16 bp):
TTTTGTTACTTTTTTG
Found at i:8559659 original size:36 final size:36
Alignment explanation
Indices: 8559611--8560067 Score: 157
Period size: 36 Copynumber: 12.6 Consensus size: 36
8559601 GACTATATCA
* * *
8559611 CAAGTCAAAAAATAAAGAACAAGTAGGACGATACTG
1 CAAGTCAAAAAATAAAGAACAACTAGGACAACACTG
* * ** ** * *
8559647 TAAGTCAAAAAATAAAAAATGACTAGGATGATATTG
1 CAAGTCAAAAAATAAAGAACAACTAGGACAACACTG
* ** *
8559683 CAAGTCAAAAAATAAAAAATGA-TAAGGACAACACTA
1 CAAGTCAAAAAATAAAGAACAACT-AGGACAACACTG
* * * *
8559719 CAAGTCAAAAAATAACGAACAACTGGGATAACACCG
1 CAAGTCAAAAAATAAAGAACAACTAGGACAACACTG
* * * *
8559755 TAAGTCAAAAAATAAAGAACGATCATA--ACGACACTA
1 CAAGTCAAAAAATAAAGAAC-AAC-TAGGACAACACTG
** *
8559791 CAAGTTGAAAAATAAAGAACAACTAAGACAACA-T-
1 CAAGTCAAAAAATAAAGAACAACTAGGACAACACTG
* * * * * *
8559825 CACAGCTTAAAAAAT-AAGAAAATGATTGGGACAATACTA
1 CA-AG-TCAAAAAATAAAGAACA--ACTAGGACAACACTG
* * ** * *
8559864 CAAGTCAGAAAATAATGAATGACTGGGATGATAC-CT-
1 CAAGTCAAAAAATAAAGAACAACTAGGA-CA-ACACTG
** **
8559900 CAAGTCAAAAAATAAAGAATGACT-GAGATGACACTG
1 CAAGTCAAAAAATAAAGAACAACTAG-GACAACACTG
* * *
8559936 CAAGTCAAAAAAT-AAGAAAATGACCATGG-CAACACCG
1 CAAGTCAAAAAATAAAGAACA--ACTA-GGACAACACTG
* * * * * * **
8559973 TAAGTTAGAAAATAAGAAAACAA-TTGGGCTAACACCA
1 CAAGTCAAAAAATAA-AGAACAACTAGGAC-AACACTG
**
8560010 CAAGTCAAAAAATATAA-AACAACTAGGATGACACTG
1 CAAGTCAAAAAATA-AAGAACAACTAGGACAACACTG
* **
8560046 TAAGTTGAAAAATAAAGAACAA
1 CAAGTCAAAAAATAAAGAACAA
8560068 TAACGACAAC
Statistics
Matches: 314, Mismatches: 78, Indels: 58
0.70 0.17 0.13
Matches are distributed among these distances:
34 6 0.02
35 24 0.08
36 205 0.65
37 60 0.19
38 12 0.04
39 7 0.02
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.17
Consensus pattern (36 bp):
CAAGTCAAAAAATAAAGAACAACTAGGACAACACTG
Found at i:8559760 original size:72 final size:71
Alignment explanation
Indices: 8559684--8559950 Score: 214
Period size: 72 Copynumber: 3.7 Consensus size: 71
8559674 ATGATATTGC
*
8559684 AAGTCAAAAAATAAAAAATGATAAGGACAACACTACAAGTCAAAAAATAACGAACAACTGGGATA
1 AAGTCAAAAAATAAAAAATGATAAGGACAACACTACAAGTCAAAAAATAAAGAACAACTGGGATA
8559749 ACACCGT
66 ACACC-T
* * * ** * ** ** *
8559756 AAGTCAAAAAATAAAGAACGATCATAACGACACTACAAGTTGAAAAATAAAGAACAACTAAGACA
1 AAGTCAAAAAATAAAAAATGATAAGGACAACACTACAAGTCAAAAAATAAAGAACAACTGGGATA
*
8559821 ACATC-
66 ACACCT
* ** * * * **
8559826 ACAGCTTAAAAAATAAGAAAATGATTGGGACAATACTACAAGTCAGAAAATAATGAATGACTGGG
1 A-AG-TCAAAAAATAA-AAAATGATAAGGACAACACTACAAGTCAAAAAATAAAGAACAACTGGG
* *
8559891 ATGATACCT
63 ATAACACCT
* * ** *
8559900 CAAGTCAAAAAATAAAGAATGACTGA-GATGACACTGCAAGTCAAAAAATAA
1 -AAGTCAAAAAATAAAAAATGA-TAAGGACAACACTACAAGTCAAAAAATAA
8559951 GAAAATGACC
Statistics
Matches: 146, Mismatches: 43, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
70 1 0.01
71 2 0.01
72 93 0.64
73 47 0.32
74 2 0.01
75 1 0.01
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.16
Consensus pattern (71 bp):
AAGTCAAAAAATAAAAAATGATAAGGACAACACTACAAGTCAAAAAATAAAGAACAACTGGGATA
ACACCT
Found at i:8559933 original size:145 final size:144
Alignment explanation
Indices: 8559689--8559950 Score: 341
Period size: 145 Copynumber: 1.8 Consensus size: 144
8559679 ATTGCAAGTC
8559689 AAAAAATAAAAAATGATAAGGACAACACTACAAGTCAAAAAATAACGAACAACTGGGATAACACC
1 AAAAAATAAAAAATGATAAGGACAACACTACAAGTCAAAAAATAACGAACAACTGGGATAACACC
**
8559754 GTAAGTCAAAAAATAAAGAACGATCATAACGACACTACAAGTTGAAAAATAAAGAACAACTAAGA
66 GTAAGTCAAAAAATAAAGAACGATCATAACGACACTACAAGTCAAAAAATAAAGAACAACTAAGA
8559819 CAACATCACAGCTT
131 CAACATCACAGCTT
** * * * ** * *
8559833 AAAAAATAAGAAAATGATTGGGACAATACTACAAGTCAGAAAATAATGAATGACTGGGATGATAC
1 AAAAAATAA-AAAATGATAAGGACAACACTACAAGTCAAAAAATAACGAACAACTGGGATAACAC
* * *
8559898 C-TCAAGTCAAAAAATAAAGAATGA-C-TGAGATGACACTGCAAGTCAAAAAATAA
65 CGT-AAGTCAAAAAATAAAGAACGATCAT-A-ACGACACTACAAGTCAAAAAATAA
8559951 GAAAATGACC
Statistics
Matches: 100, Mismatches: 14, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
143 1 0.01
144 12 0.12
145 87 0.87
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.16
Consensus pattern (144 bp):
AAAAAATAAAAAATGATAAGGACAACACTACAAGTCAAAAAATAACGAACAACTGGGATAACACC
GTAAGTCAAAAAATAAAGAACGATCATAACGACACTACAAGTCAAAAAATAAAGAACAACTAAGA
CAACATCACAGCTT
Found at i:8560129 original size:36 final size:36
Alignment explanation
Indices: 8560027--8560129 Score: 82
Period size: 36 Copynumber: 2.9 Consensus size: 36
8560017 AAAAATATAA
* * * *
8560027 AACAACTAGGATGACACTGTAAGTTGAAAAATAAAG
1 AACAACAACGATGACATTGTAAGTTGAAAAAGAAAG
* ** * **
8560063 AACAATAACGACAACATCGTAAGTAAAAAAAGAAAG
1 AACAACAACGATGACATTGTAAGTTGAAAAAGAAAG
* *
8560099 CACGACCAA-GATGACATTGTAAGTTGAAAAA
1 AAC-AACAACGATGACATTGTAAGTTGAAAAA
8560130 ATGACCAAGA
Statistics
Matches: 48, Mismatches: 18, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
36 45 0.94
37 3 0.06
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (36 bp):
AACAACAACGATGACATTGTAAGTTGAAAAAGAAAG
Found at i:8560618 original size:28 final size:27
Alignment explanation
Indices: 8560582--8560635 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
8560572 AAAATTTCCT
8560582 TGGGAGCTAGATAAACTGGGCTTAAAAA
1 TGGGAGCTAGATAAA-TGGGCTTAAAAA
* *
8560610 TGGGTGCTAGCTAAATGGGCTTAAAA
1 TGGGAGCTAGATAAATGGGCTTAAAA
8560636 TTTTACTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.24
Consensus pattern (27 bp):
TGGGAGCTAGATAAATGGGCTTAAAAA
Found at i:8560656 original size:93 final size:94
Alignment explanation
Indices: 8560493--8560667 Score: 221
Period size: 93 Copynumber: 1.9 Consensus size: 94
8560483 TTTCCCTAGT
*
8560493 GCTAGATAAACTGAGCTTAAAAATAGATGCCAAGTAAATTAGGCTTAAAATTGTACTTAGAGTCA
1 GCTAGATAAACTGAGCTTAAAAATAGATGCCAAGTAAATTAGGCTTAAAATTGTACTAAGAGTCA
*
8560558 GCTAAACTAGGTTTAAAATTTCCTTGGGA
66 GCTAAACTAGGCTTAAAATTTCCTTGGGA
* * * * * * *
8560587 GCTAGATAAACTGGGCTTAAAAATGGGTG-CTAGCTAAA-TGGGCTTAAAATTTTACTAAG-GGC
1 GCTAGATAAACTGAGCTTAAAAATAGATGCCAAG-TAAATTAGGCTTAAAATTGTACTAAGAGTC
*
8560649 TAGCTAAATTAGGCTTAAA
65 -AGCTAAACTAGGCTTAAA
8560668 TTAGCACTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
92 2 0.03
93 37 0.54
94 30 0.43
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (94 bp):
GCTAGATAAACTGAGCTTAAAAATAGATGCCAAGTAAATTAGGCTTAAAATTGTACTAAGAGTCA
GCTAAACTAGGCTTAAAATTTCCTTGGGA
Found at i:8560677 original size:33 final size:33
Alignment explanation
Indices: 8560627--8560736 Score: 116
Period size: 33 Copynumber: 3.3 Consensus size: 33
8560617 TAGCTAAATG
** *
8560627 GGCTTAAAATTTTACTAAGGGCTAGCTAAATTA
1 GGCTTAAAATTGCACTAAGGGCTAGATAAATTA
**
8560660 GGCTT-AAATTAGCACTAAATGCTAGATAAATTA
1 GGCTTAAAATT-GCACTAAGGGCTAGATAAATTA
* * *
8560693 GGCTTAAAATTTCA-TCAAGGACTAGATAAACTA
1 GGCTTAAAATTGCACT-AAGGGCTAGATAAATTA
8560726 GGCTTAAAATT
1 GGCTTAAAATT
8560737 AGACTAAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
32 6 0.09
33 53 0.83
34 5 0.08
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (33 bp):
GGCTTAAAATTGCACTAAGGGCTAGATAAATTA
Found at i:8560703 original size:66 final size:65
Alignment explanation
Indices: 8560614--8560745 Score: 169
Period size: 66 Copynumber: 2.0 Consensus size: 65
8560604 TAAAAATGGG
* * * * * *
8560614 TGCTAGCTAAATGGGCTTAAAATTTTA-CTAAGGGCTAGCTAAATTAGGCTT-AAATTAGCACTA
1 TGCTAGATAAATAGGCTTAAAATTTCATC-AAGGACTAGATAAACTAGGCTTAAAATTAG-ACTA
8560677 AA
64 AA
8560679 TGCTAGATAAATTAGGCTTAAAATTTCATCAAGGACTAGATAAACTAGGCTTAAAATTAGACTAA
1 TGCTAGATAAA-TAGGCTTAAAATTTCATCAAGGACTAGATAAACTAGGCTTAAAATTAGACTAA
8560744 A
65 A
8560745 T
1 T
8560746 TGAACTTAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
65 10 0.17
66 40 0.69
67 8 0.14
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (65 bp):
TGCTAGATAAATAGGCTTAAAATTTCATCAAGGACTAGATAAACTAGGCTTAAAATTAGACTAAA
Found at i:8560796 original size:33 final size:33
Alignment explanation
Indices: 8560758--8560822 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
8560748 AACTTAAAAT
* *
8560758 TTTCATCAGGTGCT-AGATAAACTGTGCTTAAAC
1 TTTCATCAGG-GCTCAAATAAACTGGGCTTAAAC
* *
8560791 TTTCATTAGGGGTCAAATAAACTGGGCTTAAA
1 TTTCATCAGGGCTCAAATAAACTGGGCTTAAA
8560823 ATATTTCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 2 0.07
33 25 0.93
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (33 bp):
TTTCATCAGGGCTCAAATAAACTGGGCTTAAAC
Found at i:8560938 original size:28 final size:27
Alignment explanation
Indices: 8560842--8560941 Score: 87
Period size: 28 Copynumber: 3.6 Consensus size: 27
8560832 TAGTGCTAAA
* * *
8560842 TAAACTAGGCTTAAAAATGGGTGATAGC
1 TAAATTAGGTTTAAAATTGGGTG-TAGC
* * *
8560870 TAAATTATGATTAAAATTGGGTGTCAGA
1 TAAATTAGGTTTAAAATTGGGTGT-AGC
8560898 TAAATT-GGATTTAAAATTGGGTGCTAGC
1 TAAATTAGG-TTTAAAATTGGGTG-TAGC
8560926 T-AATCTAGGTTTAAAA
1 TAAAT-TAGGTTTAAAA
8560942 ATTTTTTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
27 5 0.08
28 51 0.86
29 3 0.05
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (27 bp):
TAAATTAGGTTTAAAATTGGGTGTAGC
Found at i:8561113 original size:33 final size:33
Alignment explanation
Indices: 8561040--8561134 Score: 93
Period size: 33 Copynumber: 2.9 Consensus size: 33
8561030 AAGTAAACTA
* * *
8561040 GGCTTAAAATCTTTCTTTGATGCCAAATAAGCTG
1 GGCTTAAAAT-TTTATTAGATGCCAGATAAGCTG
* * * *
8561074 GCCTTAAAATTTTATTAGATGCCAGTTGAGTTG
1 GGCTTAAAATTTTATTAGATGCCAGATAAGCTG
* *
8561107 GGCTTAAAACTTCATTAG-TGCCAGATAA
1 GGCTTAAAATTTTATTAGATGCCAGATAA
8561135 AACTAGCTTA
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
32 8 0.16
33 32 0.65
34 9 0.18
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (33 bp):
GGCTTAAAATTTTATTAGATGCCAGATAAGCTG
Found at i:8561362 original size:22 final size:22
Alignment explanation
Indices: 8561312--8561394 Score: 89
Period size: 22 Copynumber: 3.8 Consensus size: 22
8561302 GTATACATTT
8561312 TAGCTAATCT-GAGCTTATGTGC
1 TAGCTAATCTAG-GCTTATGTGC
* *
8561334 CAACTAATCTAGGCTTATGTGC
1 TAGCTAATCTAGGCTTATGTGC
* *
8561356 TAGCTAAACTAGGCTTATGT-T
1 TAGCTAATCTAGGCTTATGTGC
*
8561377 TCAGCTAATCTGGGCTTA
1 T-AGCTAATCTAGGCTTA
8561395 AAACTTCATT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.02
22 49 0.96
23 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (22 bp):
TAGCTAATCTAGGCTTATGTGC
Found at i:8562433 original size:15 final size:15
Alignment explanation
Indices: 8562410--8562448 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
8562400 CACCCATTTA
*
8562410 TTTCCTTTTTTTTTC
1 TTTCCTTTTTTCTTC
*
8562425 TTTCTTTTTTTCTTC
1 TTTCCTTTTTTCTTC
8562440 TTTTCCTTT
1 -TTTCCTTT
8562449 CATTTTTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTCCTTTTTTCTTC
Found at i:8562445 original size:31 final size:32
Alignment explanation
Indices: 8562410--8562470 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
8562400 CACCCATTTA
**
8562410 TTTCCTTTTTTTTTCTTTC-TTT-TTTTCTTCT
1 TTTCCTTTCATTTT-TTTCATTTATTTTCTTCT
8562441 TTTCCTTTCATTTTTTTCATTTATTTTCTT
1 TTTCCTTTCATTTTTTTCATTTATTTTCTT
8562471 TTGCATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 4 0.15
31 15 0.58
32 7 0.27
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (32 bp):
TTTCCTTTCATTTTTTTCATTTATTTTCTTCT
Found at i:8562467 original size:24 final size:24
Alignment explanation
Indices: 8562404--8562485 Score: 64
Period size: 24 Copynumber: 3.5 Consensus size: 24
8562394 GCTTTCCACC
* * *
8562404 CATTTATTTCCTTTTTTTTTCTTT
1 CATTTATTTCATTTATTTTCCTTT
* *
8562428 C-TTTTTTTC--TTCTTTTCCTTT
1 CATTTATTTCATTTATTTTCCTTT
* *
8562449 CATTTTTTTCATTTATTTTCTTTT
1 CATTTATTTCATTTATTTTCCTTT
8562473 GCA-TTATTTCATT
1 -CATTTATTTCATT
8562486 GAGTGGATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
21 11 0.23
22 8 0.17
23 7 0.15
24 20 0.42
25 2 0.04
ACGTcount: A:0.10, C:0.17, G:0.01, T:0.72
Consensus pattern (24 bp):
CATTTATTTCATTTATTTTCCTTT
Found at i:8563652 original size:21 final size:21
Alignment explanation
Indices: 8563628--8563677 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
8563618 CTCAAAATTT
8563628 TCTTTTTTCTTCATTTTTTT-A
1 TCTTTTTTCTT-ATTTTTTTCA
* *
8563649 TCTTTTGTCTTTTTTTTTTCA
1 TCTTTTTTCTTATTTTTTTCA
8563670 -CTTTTTTC
1 TCTTTTTTC
8563678 AAAGTACTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (21 bp):
TCTTTTTTCTTATTTTTTTCA
Found at i:8564650 original size:3 final size:3
Alignment explanation
Indices: 8564642--8564860 Score: 115
Period size: 3 Copynumber: 75.3 Consensus size: 3
8564632 TTTTGTTCTT
* *
8564642 TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA CTA GTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * *
8564687 GTGTA GTA -TA GCA -TA TTA -TA GTA -TA GTA TTA TTA TTA -TA TTA
1 -T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
8564729 -TA TTA TTA TTA -TA GTTG TTT TTA TTT TTA TTA CTCTA -TA ATA TAA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA -T-TA TTA TTA TTA
* * * *
8564774 TATA TTA TTA -TA TCA TTA CTA TTA TTA CTA TTA TTA CTA TTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
8564819 TTA TTA TTG TTA TT- TTA TTA -TG TTA TTA TT- TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8564861 GTTCTTTCTT
Statistics
Matches: 168, Mismatches: 27, Indels: 42
0.71 0.11 0.18
Matches are distributed among these distances:
2 26 0.15
3 131 0.78
4 7 0.04
5 4 0.02
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:8564729 original size:8 final size:8
Alignment explanation
Indices: 8564716--8564860 Score: 71
Period size: 8 Copynumber: 16.8 Consensus size: 8
8564706 AGTATAGTAT
8564716 TATTATTA
1 TATTATTA
8564724 TATTA-TA
1 TATTATTA
8564731 TTATTATTA
1 -TATTATTA
*
8564740 TAGTTGTT-
1 TA-TTATTA
*
8564748 T-TTATTTT
1 TATTA-TTA
8564756 TATTACTCTA
1 TATTA-T-TA
*
8564766 TAATATAATA
1 T-AT-TATTA
8564776 TATTATTA
1 TATTATTA
*
8564784 TATCATTA
1 TATTATTA
8564792 CTATTATTA
1 -TATTATTA
8564801 CTATTATTA
1 -TATTATTA
8564810 CTATTATTA
1 -TATTATTA
8564819 TTATTATTGTTA
1 -TATTA---TTA
*
8564831 TTTTATTA
1 TATTATTA
*
8564839 TGTTATTA
1 TATTATTA
*
8564847 TTTTATTA
1 TATTATTA
*
8564855 TTTTAT
1 TATTAT
8564861 GTTCTTTCTT
Statistics
Matches: 112, Mismatches: 12, Indels: 26
0.75 0.08 0.17
Matches are distributed among these distances:
6 2 0.02
7 4 0.04
8 48 0.43
9 42 0.38
10 5 0.04
11 6 0.05
12 5 0.04
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (8 bp):
TATTATTA
Found at i:8565674 original size:6 final size:6
Alignment explanation
Indices: 8565665--8565728 Score: 58
Period size: 6 Copynumber: 10.0 Consensus size: 6
8565655 AGGTTTTTCT
* *
8565665 TTTTTA TTTTTA TTTTTA TTTTT- TGATTTTG TTTTTA TTTATA TTTTATA
1 TTTTTA TTTTTA TTTTTA TTTTTA T--TTTTA TTTTTA TTTTTA TTTT-TA
8565715 TTTATTTA TTTTTA
1 -TT-TTTA TTTTTA
8565729 GTTGTTTTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
5 1 0.02
6 33 0.67
7 8 0.16
8 5 0.10
9 2 0.04
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:8565703 original size:31 final size:32
Alignment explanation
Indices: 8565665--8565726 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
8565655 AGGTTTTTCT
*
8565665 TTTTTATTTTTATTTT-TATTT-TTTGATTTTG
1 TTTTTATTTATATTTTATATTTATTT-ATTTTG
8565696 TTTTTATTTATATTTTATATTTATTTATTTT
1 TTTTTATTTATATTTTATATTTATTTATTTT
8565727 TAGTTGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 15 0.54
32 10 0.36
33 3 0.11
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (32 bp):
TTTTTATTTATATTTTATATTTATTTATTTTG
Found at i:8565718 original size:17 final size:17
Alignment explanation
Indices: 8565667--8565728 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 17
8565657 GTTTTTCTTT
*
8565667 TTTATTTTTATTTT-TA
1 TTTATTTATATTTTATA
* * *
8565683 TTT-TTT-GATTTTGTT
1 TTTATTTATATTTTATA
8565698 TTTATTTATATTTTATA
1 TTTATTTATATTTTATA
8565715 TTTATTTAT-TTTTA
1 TTTATTTATATTTTA
8565729 GTTGTTTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
14 5 0.13
15 7 0.18
16 11 0.29
17 15 0.39
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTATTTATATTTTATA
Found at i:8568330 original size:21 final size:21
Alignment explanation
Indices: 8568304--8568352 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
8568294 GGAGTTGAAT
*
8568304 AGTTTATTCTTATGACATACA
1 AGTTTATTCCTATGACATACA
8568325 AGTTTATTCCTATGACATACA
1 AGTTTATTCCTATGACATACA
8568346 AGTTTAT
1 AGTTTAT
8568353 CCAGTTTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (21 bp):
AGTTTATTCCTATGACATACA
Found at i:8574554 original size:57 final size:57
Alignment explanation
Indices: 8574481--8574645 Score: 158
Period size: 58 Copynumber: 2.8 Consensus size: 57
8574471 AAAAGAGAAG
*
8574481 AAAATTAAAAAAGAG-AATTTCTAAATTGA-CTCAAATGGT-AAAACATTTTA-AAATAAA
1 AAAAATAAAAAAGAGAAATTTCTAAATTGATC-CAAATGGTGAAAA-A-TTTAGAAAT-AA
* * *
8574538 AAAAATAAAAAGGAGAAATTTGTAAATTGATCCAAATTGTGAAAAATTTAGAAATAA
1 AAAAATAAAAAAGAGAAATTTCTAAATTGATCCAAATGGTGAAAAATTTAGAAATAA
* * ** *
8574595 AAAAATAAAAAACATATAAATTTTCTAAATTGGCCCAAATGGTGGAAAATT
1 AAAAAT-AAAAA-AGAGAAA-TTTCTAAATTGATCCAAATGGTGAAAAATT
8574646 CAAAAAGTCA
Statistics
Matches: 89, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
57 25 0.28
58 30 0.34
59 9 0.10
60 25 0.28
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.27
Consensus pattern (57 bp):
AAAAATAAAAAAGAGAAATTTCTAAATTGATCCAAATGGTGAAAAATTTAGAAATAA
Found at i:8574564 original size:58 final size:56
Alignment explanation
Indices: 8574481--8574606 Score: 150
Period size: 57 Copynumber: 2.2 Consensus size: 56
8574471 AAAAGAGAAG
*
8574481 AAAATTAAAAAAGAGAATTTCTAAATTGA-CTCAAATGGT-AAAACATTTTA-AAATAAA
1 AAAAATAAAAAAGAGAATTTCTAAATTGATC-CAAATGGTGAAAA-A-TTTAGAAAT-AA
* * *
8574538 AAAAATAAAAAGGAGAAATTTGTAAATTGATCCAAATTGTGAAAAATTTAGAAATAA
1 AAAAATAAAAAAGAG-AATTTCTAAATTGATCCAAATGGTGAAAAATTTAGAAATAA
8574595 AAAAATAAAAAA
1 AAAAATAAAAAA
8574607 CATATAAATT
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
57 30 0.50
58 25 0.42
59 5 0.08
ACGTcount: A:0.60, C:0.05, G:0.10, T:0.25
Consensus pattern (56 bp):
AAAAATAAAAAAGAGAATTTCTAAATTGATCCAAATGGTGAAAAATTTAGAAATAA
Found at i:8578826 original size:20 final size:19
Alignment explanation
Indices: 8578789--8578865 Score: 79
Period size: 20 Copynumber: 4.1 Consensus size: 19
8578779 AGATATCAAT
*
8578789 AATG-AAAA-AAATAAAAA
1 AATGAAAAAGAAAGAAAAA
8578806 AATGAAAAAAGAAAGAAAAA
1 AATG-AAAAAGAAAGAAAAA
* *
8578826 AATGAAAAA-AATGTAAAA
1 AATGAAAAAGAAAGAAAAA
*
8578844 AATGTAAAAAGAGAGAAAAA
1 AATG-AAAAAGAAAGAAAAA
8578864 AA
1 AA
8578866 AGACTTAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
17 4 0.08
18 11 0.22
19 14 0.29
20 20 0.41
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (19 bp):
AATGAAAAAGAAAGAAAAA
Found at i:8578838 original size:9 final size:9
Alignment explanation
Indices: 8578789--8578853 Score: 78
Period size: 9 Copynumber: 7.0 Consensus size: 9
8578779 AGATATCAAT
8578789 AATGAAAAA
1 AATGAAAAA
8578798 AAT-AAAAA
1 AATGAAAAA
8578806 AATGAAAAAA
1 AATG-AAAAA
*
8578816 GAAAGAAAAA
1 -AATGAAAAA
8578826 AATGAAAAA
1 AATGAAAAA
*
8578835 AATGTAAAA
1 AATGAAAAA
8578844 AATGTAAAAA
1 AATG-AAAAA
8578854 GAGAGAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
8 8 0.17
9 23 0.48
10 14 0.29
11 3 0.06
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.12
Consensus pattern (9 bp):
AATGAAAAA
Found at i:8578844 original size:38 final size:37
Alignment explanation
Indices: 8578789--8578865 Score: 118
Period size: 38 Copynumber: 2.1 Consensus size: 37
8578779 AGATATCAAT
8578789 AATGAAAAAAATAAAAAAATGAAAAAAGAAAGAAAAA
1 AATGAAAAAAATAAAAAAATGAAAAAAGAAAGAAAAA
* * *
8578826 AATGAAAAAAATGTAAAAAATGTAAAAAGAGAGAAAAA
1 AATGAAAAAAAT-AAAAAAATGAAAAAAGAAAGAAAAA
8578864 AA
1 AA
8578866 AGACTTAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 12 0.33
38 24 0.67
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (37 bp):
AATGAAAAAAATAAAAAAATGAAAAAAGAAAGAAAAA
Found at i:8580174 original size:21 final size:21
Alignment explanation
Indices: 8580149--8580208 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
8580139 ACTTTTAAGT
*
8580149 TTTCAAATGAGAGTCTTTAAA
1 TTTCAAATGAGAATCTTTAAA
* * *
8580170 TTTCAAATAAGAATATTTGAA
1 TTTCAAATGAGAATCTTTAAA
*
8580191 TTTTAAATGAGAATCTTT
1 TTTCAAATGAGAATCTTT
8580209 GAGATGTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42
Consensus pattern (21 bp):
TTTCAAATGAGAATCTTTAAA
Found at i:8581030 original size:44 final size:45
Alignment explanation
Indices: 8580821--8581031 Score: 218
Period size: 44 Copynumber: 4.8 Consensus size: 45
8580811 ATTTTTGAAG
* * *
8580821 AGCTTTATTCATTTTTCCAAAGTTATTGAGCCTTTGTTTAGAGGA
1 AGCTTTATTTATTTTTCCAAAGTTATTGAGCCTCTATTTAGAGGA
** * * *
8580866 A-CCCTATTTA-TTTTCCTAAAGTCATTGAGCCTTTATTTAGATG-
1 AGCTTTATTTATTTTTCC-AAAGTTATTGAGCCTCTATTTAGAGGA
** * * *
8580909 AGCCCTATTTA-TTTTCCTAAAGTTATTAAGCCTCTGTTTAGA-TA
1 AGCTTTATTTATTTTTCC-AAAGTTATTGAGCCTCTATTTAGAGGA
* *
8580953 AGCTTTATTTATTTTTCCAAAGTTGTTGAGCCTCTAATTAGA-GA
1 AGCTTTATTTATTTTTCCAAAGTTATTGAGCCTCTATTTAGAGGA
*
8580997 AGCTTTATTTATTTTTCCAAAGTTGTTGAGCCTCT
1 AGCTTTATTTATTTTTCCAAAGTTATTGAGCCTCT
8581032 TTATTTATTT
Statistics
Matches: 144, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
43 7 0.05
44 130 0.90
45 7 0.05
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (45 bp):
AGCTTTATTTATTTTTCCAAAGTTATTGAGCCTCTATTTAGAGGA
Found at i:8581035 original size:75 final size:75
Alignment explanation
Indices: 8580955--8581098 Score: 209
Period size: 75 Copynumber: 1.9 Consensus size: 75
8580945 TTTAGATAAG
** *
8580955 CTTTATTTATTTTTCCAAAGTTGTTGAGCCTCTAATTAG-AGAAGCTTTATTTATTTTTCCAAAG
1 CTTTATTTATTTTTCCAAAGTCATTAAGCCTCTAATTAGAAG-AGCTTTATTTATTTTTCCAAAG
8581019 TTGTTGAGCCT
65 TTGTTGAGCCT
* * * *
8581030 CTTTATTTATTTTTTCAAAGTCATTAAGCCTCTAATTATAAGAGTTTTATTTATTTTTTCAAAGT
1 CTTTATTTATTTTTCCAAAGTCATTAAGCCTCTAATTAGAAGAGCTTTATTTATTTTTCCAAAGT
8581095 TGTT
66 TGTT
8581099 ACGCATCTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
75 59 0.97
76 2 0.03
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (75 bp):
CTTTATTTATTTTTCCAAAGTCATTAAGCCTCTAATTAGAAGAGCTTTATTTATTTTTCCAAAGT
TGTTGAGCCT
Found at i:8581060 original size:31 final size:31
Alignment explanation
Indices: 8580999--8581062 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
8580989 ATTAGAGAAG
** *
8580999 CTTTATTTATTTTTCCAAAGTTGTTGAGCCT
1 CTTTATTTATTTTTCCAAAGTCATTAAGCCT
*
8581030 CTTTATTTATTTTTTCAAAGTCATTAAGCCT
1 CTTTATTTATTTTTCCAAAGTCATTAAGCCT
8581061 CT
1 CT
8581063 AATTATAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52
Consensus pattern (31 bp):
CTTTATTTATTTTTCCAAAGTCATTAAGCCT
Found at i:8587949 original size:111 final size:112
Alignment explanation
Indices: 8587650--8588092 Score: 308
Period size: 111 Copynumber: 4.0 Consensus size: 112
8587640 ATGGTTATTT
* * * * * * * *
8587650 AACCTCGACTTAGTCTAGGTCAGTTTTTCAGACCAGCGGTTTAAT-CTCGGTTGTTCAATCTTAG
1 AACCTCAACTTAGTCTAGGTCAATTTTTCAGACCAGTGATTCAATCCT-GGTCGTTCGATCTCAG
* * * ***
8587714 -TTCCATCTAGATCGTTATCTAGATTTACATTTCAATCTTGGTCATTC
65 ATTCCATCTAGATCATTATCTAGACTTACAGTTCAATCCCAGTCATTC
* * * * ** * * * * * *
8587761 GATCTTAACTCAGTCTAAAT-TATTTTTCTGACCAAT-AGTTCAATCCTGATCGTTTGATCT-TG
1 AACCTCAACTTAGTCTAGGTCAATTTTTCAGACCAGTGA-TTCAATCCTGGTCGTTCGATCTCAG
* * * * *
8587823 ATTTCATCCAAATCATTATCTAGACTTGCAGTTCAATCTCAGTCATTC
65 ATTCCATCTAGATCATTATCTAGACTTACAGTTCAATCCCAGTCATTC
** * *
8587871 AACCTTGACTTAGTCTAGGTCAATTTTTTAGACCAGTGATTCAATCCTGGTCATTCGATCTCAG-
1 AACCTCAACTTAGTCTAGGTCAATTTTTCAGACCAGTGATTCAATCCTGGTCGTTCGATCTCAGA
* * ** * *
8587935 TTCCATCTAGATCATTATCCAGATTTATGGTTCAATCCCAGTTATTG
66 TTCCATCTAGATCATTATCTAGACTTACAGTTCAATCCCAGTCATTC
* * * * ** * *
8587982 GACCTCAACTTGGTTTAGGTCAATTTTTCGGACTTGTGATTCAATCTTGGTTGTTCGATCTC-GA
1 AACCTCAACTTAGTCTAGGTCAATTTTTCAGACCAGTGATTCAATCCTGGTCGTTCGATCTCAGA
** * * * *
8588046 TTCCATCTAGATTGTTGTCTAAACATGCAGCTT-AATCCCAGTCATTC
66 TTCCATCTAGATCATTATCTAGACTTACAG-TTCAATCCCAGTCATTC
8588093 GATCTCGACT
Statistics
Matches: 247, Mismatches: 77, Indels: 16
0.73 0.23 0.05
Matches are distributed among these distances:
109 1 0.00
110 78 0.32
111 164 0.66
112 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (112 bp):
AACCTCAACTTAGTCTAGGTCAATTTTTCAGACCAGTGATTCAATCCTGGTCGTTCGATCTCAGA
TTCCATCTAGATCATTATCTAGACTTACAGTTCAATCCCAGTCATTC
Found at i:8588406 original size:3 final size:3
Alignment explanation
Indices: 8588398--8588607 Score: 63
Period size: 3 Copynumber: 73.0 Consensus size: 3
8588388 TTTGTTCTTG
* *
8588398 TAT TAT TAT TAT TAT TATT TAT TAT TAT TAC TAG TAT TAT TA- TAGT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * *
8588444 GTAT TA- TAG CA- TAT TA- TAG TA- TAG TAT AAT TCT TA- TAT TA-
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
8588484 TAT TAT TAT TA- TAGT TGT T-T CTGT TTT TAT TAC T-T TA- TAA TAT
1 TAT TAT TAT TAT TA-T TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
8588527 AAT ATAT TAT TA- TAT CAT TAC TAT TAT TAC TAT TAT TAT TAT TGT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
8588572 TGT TGT TGT TGT TAT T-T TAT TAT T-T TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8588608 GTTCTTTCCT
Statistics
Matches: 160, Mismatches: 26, Indels: 42
0.70 0.11 0.18
Matches are distributed among these distances:
2 27 0.17
3 123 0.77
4 8 0.05
5 2 0.01
ACGTcount: A:0.30, C:0.04, G:0.07, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:8588448 original size:25 final size:23
Alignment explanation
Indices: 8588396--8588450 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 23
8588386 ATTTTGTTCT
* *
8588396 TGTATTATTATTATTATTATTTA
1 TGTATTATTACTAGTATTATTTA
8588419 T-TATTATTACTAGTATTATTATA
1 TGTATTATTACTAGTATTATT-TA
8588442 GTGTATTAT
1 -TGTATTAT
8588451 AGCATATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 17 0.63
23 3 0.11
24 1 0.04
25 6 0.22
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.60
Consensus pattern (23 bp):
TGTATTATTACTAGTATTATTTA
Found at i:8588450 original size:10 final size:10
Alignment explanation
Indices: 8588423--8588489 Score: 55
Period size: 10 Copynumber: 6.6 Consensus size: 10
8588413 TATTTATTAT
8588423 TATTACTAGTA
1 TATTA-TAGTA
*
8588434 TTATTATAGTG
1 -TATTATAGTA
*
8588445 TATTATAGCA
1 TATTATAGTA
8588455 TATTATAGTA
1 TATTATAGTA
* *
8588465 TAGTATAAT-
1 TATTATAGTA
* *
8588474 TCTTATATTA
1 TATTATAGTA
8588484 TATTAT
1 TATTAT
8588490 TATTATAGTT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
9 6 0.14
10 29 0.66
11 4 0.09
12 5 0.11
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (10 bp):
TATTATAGTA
Found at i:8588596 original size:8 final size:8
Alignment explanation
Indices: 8588583--8588607 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8588573 GTTGTTGTTG
8588583 TTATTTTA
1 TTATTTTA
8588591 TTATTTTA
1 TTATTTTA
8588599 TTATTTTA
1 TTATTTTA
8588607 T
1 T
8588608 GTTCTTTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTATTTTA
Found at i:8589144 original size:20 final size:21
Alignment explanation
Indices: 8589096--8589145 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
8589086 TTTTGAAAAA
*
8589096 TTTATGGAA-ATTTGCATTTGT
1 TTTAT-GAATATTTGAATTTGT
*
8589117 TTTTTGAATATTTGAATTT-T
1 TTTATGAATATTTGAATTTGT
8589137 TTTATGAAT
1 TTTATGAAT
8589146 TTTTCTATAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.58
Consensus pattern (21 bp):
TTTATGAATATTTGAATTTGT
Found at i:8589479 original size:5 final size:5
Alignment explanation
Indices: 8589451--8589507 Score: 55
Period size: 5 Copynumber: 11.2 Consensus size: 5
8589441 ATTTTTATAA
* *
8589451 ATTTAT ATTTT GAATTT A-TTT ATTTT ATTTT ATTTT -TAGTT ATTTT
1 ATTT-T ATTTT -ATTTT ATTTT ATTTT ATTTT ATTTT AT-TTT ATTTT
8589497 ATTTT ATTTT A
1 ATTTT ATTTT A
8589508 CTAACTTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
4 5 0.11
5 30 0.68
6 9 0.20
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (5 bp):
ATTTT
Found at i:8589484 original size:25 final size:25
Alignment explanation
Indices: 8589451--8589507 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
8589441 ATTTTTATAA
*
8589451 ATTTATATTTTGAATTTA-TTTATTTT
1 ATTT-TATTTT-AAGTTATTTTATTTT
*
8589477 ATTTTATTTTTAGTTATTTTATTTT
1 ATTTTATTTTAAGTTATTTTATTTT
8589502 ATTTTA
1 ATTTTA
8589508 CTAACTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 4 0.14
25 20 0.71
26 4 0.14
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (25 bp):
ATTTTATTTTAAGTTATTTTATTTT
Found at i:8589516 original size:20 final size:20
Alignment explanation
Indices: 8589431--8589519 Score: 67
Period size: 20 Copynumber: 4.3 Consensus size: 20
8589421 GTTTTCCTTT
8589431 TTTTATTTTTATTTTTA-TAAA
1 TTTTA-TTTTATTTTTACT-AA
* * *
8589452 TTTATATTTTGA-ATTTATTTA
1 TTT-TATTTT-ATTTTTACTAA
* *
8589473 TTTTATTTTATTTTTAGTTA
1 TTTTATTTTATTTTTACTAA
8589493 TTTTATTTTA-TTTTACTAA
1 TTTTATTTTATTTTTACTAA
8589512 CTTTTATT
1 -TTTTATT
8589520 AGTTATTTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
19 8 0.14
20 30 0.53
21 15 0.26
22 4 0.07
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTATTTTATTTTTACTAA
Found at i:8593732 original size:17 final size:16
Alignment explanation
Indices: 8593705--8593737 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
8593695 ATGAATGCTT
8593705 GAATAGATAATGATGC
1 GAATAGATAATGATGC
8593721 GAATATGATAATGATGC
1 GAATA-GATAATGATGC
8593738 AAAGATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.27
Consensus pattern (16 bp):
GAATAGATAATGATGC
Found at i:8596095 original size:19 final size:19
Alignment explanation
Indices: 8596071--8596109 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8596061 CCATTAAAAG
8596071 TTTTATTACTATTATTATT
1 TTTTATTACTATTATTATT
*
8596090 TTTTATTATTATTATTATT
1 TTTTATTACTATTATTATT
8596109 T
1 T
8596110 ATCTTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTATTACTATTATTATT
Found at i:8596101 original size:16 final size:15
Alignment explanation
Indices: 8596080--8596121 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
8596070 GTTTTATTAC
8596080 TATTATTATTTTTTA
1 TATTATTATTTTTTA
*
8596095 TTATTATTATTATTTA
1 -TATTATTATTTTTTA
*
8596111 TCTTATTATTT
1 TATTATTATTT
8596122 AATAATTTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTATTATTTTTTA
Found at i:8596116 original size:12 final size:11
Alignment explanation
Indices: 8596082--8596122 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 11
8596072 TTTATTACTA
8596082 TTATTATTT-T
1 TTATTATTTAT
8596092 TTATTA-TTA-
1 TTATTATTTAT
8596101 TTATTATTTAT
1 TTATTATTTAT
8596112 CTTATTATTTA
1 -TTATTATTTA
8596123 ATAATTTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.30
10 9 0.33
12 10 0.37
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTATTTAT
Found at i:8597535 original size:26 final size:26
Alignment explanation
Indices: 8597503--8597563 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
8597493 AGTTTGGTCC
*
8597503 GGTTTGGTCCTATTTGATGTCAGTCT
1 GGTTTGGTCCTATTTGACGTCAGTCT
8597529 GGTTTGGTCCTATTTGACGTCAGTCT
1 GGTTTGGTCCTATTTGACGTCAGTCT
*
8597555 GGTTCGGTC
1 GGTTTGGTC
8597564 TGGTTTAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.10, C:0.18, G:0.30, T:0.43
Consensus pattern (26 bp):
GGTTTGGTCCTATTTGACGTCAGTCT
Found at i:8598378 original size:21 final size:21
Alignment explanation
Indices: 8598354--8598407 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
8598344 AGCCATTGTC
8598354 AGAAAAAA-AAA-GAGAAAAACA
1 AGAAAAAATAAATGA-AAAAA-A
8598375 AGAAAAAATAAATGAAAAAAA
1 AGAAAAAATAAATGAAAAAAA
8598396 AG-AAAAATAAAT
1 AGAAAAAATAAAT
8598408 AAATAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.32
21 11 0.35
22 8 0.26
23 2 0.06
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (21 bp):
AGAAAAAATAAATGAAAAAAA
Found at i:8598403 original size:20 final size:22
Alignment explanation
Indices: 8598354--8598407 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 22
8598344 AGCCATTGTC
*
8598354 AGAAAAA-AAAAGAGAAAAACA
1 AGAAAAATAAATGAGAAAAACA
8598375 AGAAAAAATAAATGA-AAAAA-A
1 AG-AAAAATAAATGAGAAAAACA
8598396 AGAAAAATAAAT
1 AGAAAAATAAAT
8598408 AAATAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.33
21 5 0.17
22 10 0.33
23 5 0.17
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (22 bp):
AGAAAAATAAATGAGAAAAACA
Found at i:8598784 original size:49 final size:47
Alignment explanation
Indices: 8598555--8598883 Score: 322
Period size: 48 Copynumber: 6.8 Consensus size: 47
8598545 TTTTTAATTT
* * * ** *
8598555 AAAAAGCTCTTCTAATCAAAGGTTCAACAACTTTAAAATTTATCTTG
1 AAAAAGCTCCTCTAAGCAGAGACTCAACAACTTTAAAATTCATCTTG
* *
8598602 AAAAAGACTCATCTAAGCAGAGACTCAACAACTTTAAAATTTATCTTG
1 AAAAAG-CTCCTCTAAGCAGAGACTCAACAACTTTAAAATTCATCTTG
** *
8598650 AAAAAGACTATTCTAAGCAGA-AGCTCAACAACTTTAAAATTCATTTTGG
1 AAAAAG-CTCCTCTAAGCAGAGA-CTCAACAACTTTAAAATTCATCTT-G
* * * * *
8598699 AAAAGGCTCCTCTAAGCAGAGGCTTAACAATTTTTAAAAATTCATTTTG
1 AAAAAGCTCCTCTAAGCAGAGACTCAACAA-CTTT-AAAATTCATCTTG
*
8598748 AAAAATGCTCCTCTATTG-AGAGACTCAACAACTTTAAAAATTCATCTTG
1 AAAAA-GCTCCTCTA-AGCAGAGACTCAACAACTTT-AAAATTCATCTTG
*
8598797 AAAAAGGCTCCTCTAAGTAGA-AGCTCAACAACTTTAAAAATTCATCTTGG
1 AAAAA-GCTCCTCTAAGCAGAGA-CTCAACAACTTT-AAAATTCATCTT-G
** * *
8598847 AAAAAGCTTTTTTAAGCAGAGGCTCAACAACTTTAAA
1 AAAAAGCTCCTCTAAGCAGAGACTCAACAACTTTAAA
8598884 TTGAATTGTC
Statistics
Matches: 242, Mismatches: 28, Indels: 23
0.83 0.10 0.08
Matches are distributed among these distances:
47 7 0.03
48 101 0.42
49 95 0.39
50 38 0.16
51 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (47 bp):
AAAAAGCTCCTCTAAGCAGAGACTCAACAACTTTAAAATTCATCTTG
Found at i:8598873 original size:98 final size:96
Alignment explanation
Indices: 8598555--8598883 Score: 385
Period size: 98 Copynumber: 3.4 Consensus size: 96
8598545 TTTTTAATTT
* * * * * *
8598555 AAAAAGCTCTTCTAATCAAAGGTTCAACAACTTTAAAATTTATCTTGAAAAAGACTCATCTAAGC
1 AAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCTTGAAAAAGGCTCCTCTAAGC
*
8598620 AG-AGACTCAACAACTTT-AAAATTTATCTTG
66 AGAAG-CTCAACAACTTTAAAAATTCATCTTG
* * * *
8598650 AAAAAGACTATTCTAAGCAGAAGCTCAACAACTTTAAAATTCATTTTGGAAAAGGCTCCTCTAAG
1 AAAAAG-CTCTTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCTTGAAAAAGGCTCCTCTAAG
* * * *
8598715 CAGAGGCTTAACAATTTTTAAAAATTCATTTTG
65 CAGAAGCTCAACAA-CTTTAAAAATTCATCTTG
* * *
8598748 AAAAATGCTCCTCTATTG-AGAGACTCAACAACTTTAAAAATTCATCTTGAAAAAGGCTCCTCTA
1 AAAAA-GCTCTTCTA-AGCAGAGGCTCAACAACTTT-AAAATTCATCTTGAAAAAGGCTCCTCTA
*
8598812 AGTAGAAGCTCAACAACTTTAAAAATTCATCTTGG
63 AGCAGAAGCTCAACAACTTTAAAAATTCATCTT-G
* *
8598847 AAAAAGCTTTTTTAAGCAGAGGCTCAACAACTTTAAA
1 AAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAA
8598884 TTGAATTGTC
Statistics
Matches: 193, Mismatches: 32, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
95 6 0.03
96 58 0.30
97 8 0.04
98 74 0.38
99 47 0.24
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (96 bp):
AAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCTTGAAAAAGGCTCCTCTAAGC
AGAAGCTCAACAACTTTAAAAATTCATCTTG
Found at i:8599219 original size:99 final size:100
Alignment explanation
Indices: 8598955--8599224 Score: 255
Period size: 99 Copynumber: 2.7 Consensus size: 100
8598945 AGAAGATATG
* * ** * * * ** *
8598955 AATGACTTCAGATATCACCATTGAAGAAAACTTGAATATCACCATTAAGAAGATGTAATTCAAG-
1 AATGACTTCGGATATCGCCACCGAAGAAAACTCGAATATCACCATCAAGAAAATACAATTTAAGT
* ** * * * * *
8599019 -CTAACACTCAGATATCACCA-CCGAGAATGTGCA
66 TTTAACACTTGGATGTCACTATTCAAGAATATGCA
* * * *
8599052 AATGGCTTCGGATATCGCCACTGAAGAAAACTCGAATATCACCATCGAGAAAATACAATTTAATT
1 AATGACTTCGGATATCGCCACCGAAGAAAACTCGAATATCACCATCAAGAAAATACAATTTAAGT
8599117 TTTAACACTTGGATGTCACTATTCAAGAATATGC-
66 TTTAACACTTGGATGTCACTATTCAAGAATATGCA
* *
8599151 AATGACTTCGGATATTGCCACCGAAGGAAAA-TCGAATATCACCATCAAGAAAATA-TATTTCAA
1 AATGACTTCGGATATCGCCACCGAA-GAAAACTCGAATATCACCATCAAGAAAATACAATTT-AA
*
8599214 GTTTTATCACT
64 GTTTTAACACT
8599225 CAGATATCAC
Statistics
Matches: 141, Mismatches: 27, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
97 52 0.37
98 4 0.03
99 71 0.50
100 14 0.10
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (100 bp):
AATGACTTCGGATATCGCCACCGAAGAAAACTCGAATATCACCATCAAGAAAATACAATTTAAGT
TTTAACACTTGGATGTCACTATTCAAGAATATGCA
Found at i:8599233 original size:42 final size:43
Alignment explanation
Indices: 8599186--8599280 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 43
8599176 GGAAAATCGA
** *
8599186 ATATCACCATC-AAGAAA-ATAT-ATTTCAAGTTTTATCACTCAG
1 ATATCACCATCTAA-AAAGATATAATTT-AAACTTTAACACTCAG
8599228 ATATCACCA-CTAAAAAGATATAATTTAAACTTTAACACTCAG
1 ATATCACCATCTAAAAAGATATAATTTAAACTTTAACACTCAG
8599270 ATATCACCATC
1 ATATCACCATC
8599281 GAGGAGATGC
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
41 4 0.09
42 37 0.80
43 5 0.11
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (43 bp):
ATATCACCATCTAAAAAGATATAATTTAAACTTTAACACTCAG
Found at i:8599300 original size:42 final size:42
Alignment explanation
Indices: 8599216--8599360 Score: 147
Period size: 42 Copynumber: 3.5 Consensus size: 42
8599206 TATTTCAAGT
* * ** *
8599216 TTTATCACTCAGATATCACCACTAAAAAGATATAATTTAAAC
1 TTTAACACTCAGATATCACCACTGAAAAGATGCAATTCAAAC
**
8599258 TTTAACACTCAGATATCACCA-TCGAGGAGATGCAATTCAAAC
1 TTTAACACTCAGATATCACCACT-GAAAAGATGCAATTCAAAC
*
8599300 --T--CACTCAGATATCACCACTGAAAAGATGCAATTCAAAT
1 TTTAACACTCAGATATCACCACTGAAAAGATGCAATTCAAAC
* *
8599338 TTTAACACTAAGAATATTACCAC
1 TTTAACACTCAG-ATATCACCAC
8599361 CGAAGGAAAA
Statistics
Matches: 84, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
38 32 0.38
39 1 0.01
40 2 0.02
41 1 0.01
42 39 0.46
43 9 0.11
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (42 bp):
TTTAACACTCAGATATCACCACTGAAAAGATGCAATTCAAAC
Found at i:8599314 original size:38 final size:38
Alignment explanation
Indices: 8599220--8599336 Score: 128
Period size: 38 Copynumber: 3.0 Consensus size: 38
8599210 TCAAGTTTTA
* ** *
8599220 TCACTCAGATATCACCACTAAAAAGATATAATTTAAAC
1 TCACTCAGATATCACCACTGAAAAGATGCAATTCAAAC
**
8599258 TTTAACACTCAGATATCACCA-TCGAGGAGATGCAATTCAAAC
1 --T--CACTCAGATATCACCACT-GAAAAGATGCAATTCAAAC
8599300 TCACTCAGATATCACCACTGAAAAGATGCAATTCAAA
1 TCACTCAGATATCACCACTGAAAAGATGCAATTCAAA
8599337 TTTTAACACT
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
38 32 0.49
39 1 0.02
40 2 0.03
41 1 0.02
42 29 0.45
ACGTcount: A:0.43, C:0.23, G:0.10, T:0.24
Consensus pattern (38 bp):
TCACTCAGATATCACCACTGAAAAGATGCAATTCAAAC
Found at i:8599651 original size:135 final size:135
Alignment explanation
Indices: 8599387--8599806 Score: 540
Period size: 134 Copynumber: 3.1 Consensus size: 135
8599377 TATCGCCATA
* * * * * * * *
8599387 AGAAAATGAAAACGTAAAGAAAGAGTGCAAATTCAGACTTTAAACTTGGATATCACCACCGAGTG
1 AGAAAATGAAAATGTAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGAATATCACCACCGAGTG
* * * *
8599452 ATTTTG-AAATCGTCTTGACTATCATCATCAA-AAAATAAAATTCATATCTTAATACTCAGAATA
66 ATTTTGAAAAT-GTATTGAATATCACCATCAAGAAAATAAAATTCATACCTTAATACTCAGAATA
8599515 TCACTG
130 TCACTG
* *
8599521 AGAAAAATGCAAATGTAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGAATGTCACCACCGAGT
1 AG-AAAATGAAAATGTAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGAATATCACCACCGAGT
* *
8599586 GATTTTGAAAATGTATTGAATATCACCATCAAGAAAATAAAATTTATACCTTAATACTC-GGATA
65 GATTTTGAAAATGTATTGAATATCACCATCAAGAAAATAAAATTCATACCTTAATACTCAGAATA
8599650 TCACTG
130 TCACTG
* *
8599656 AGAAAATGTAAATTTAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGAATATCACCACCGAGTG
1 AGAAAATGAAAATGTAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGAATATCACCACCGAGTG
* ** * * *
8599721 ATTTTGAAAATGTTTTGAATATCACTTTCAAGAAAATGAAATTCATACTTTAATACTCATATATT
66 ATTTTGAAAATGTATTGAATATCACCATCAAGAAAATAAAATTCATACCTTAATACTCAGA-A-T
*
8599786 ACCACTG
129 ATCACTG
*
8599793 AGAAGAATGTAAAT
1 AGAA-AATGAAAAT
8599807 TCAAACAATA
Statistics
Matches: 251, Mismatches: 28, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
134 114 0.45
135 88 0.35
136 29 0.12
137 11 0.04
138 9 0.04
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (135 bp):
AGAAAATGAAAATGTAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGAATATCACCACCGAGTG
ATTTTGAAAATGTATTGAATATCACCATCAAGAAAATAAAATTCATACCTTAATACTCAGAATAT
CACTG
Found at i:8600072 original size:35 final size:35
Alignment explanation
Indices: 8600007--8600104 Score: 124
Period size: 35 Copynumber: 2.8 Consensus size: 35
8599997 GCTATGATGT
* *
8600007 AAATGTCTTCTCTCAAAATGATGAAAATGAAATGC
1 AAATGTCTTTTCTTAAAATGATGAAAATGAAATGC
* * *
8600042 AAATTTCTTTTCTTAAAATGATGCATATGAAATGC
1 AAATGTCTTTTCTTAAAATGATGAAAATGAAATGC
* * *
8600077 AAGTGTCGTTTCTTAACATGATGAAAAT
1 AAATGTCTTTTCTTAAAATGATGAAAAT
8600105 ATCTTTTCTC
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (35 bp):
AAATGTCTTTTCTTAAAATGATGAAAATGAAATGC
Found at i:8605954 original size:12 final size:11
Alignment explanation
Indices: 8605937--8605974 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
8605927 TAATGCACAC
8605937 ATTTTATTATT
1 ATTTTATTATT
8605948 GATTTTATTA-T
1 -ATTTTATTATT
8605959 ATTTTTATTATT
1 A-TTTTATTATT
8605971 ATTT
1 ATTT
8605975 AAGTTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.04
11 12 0.50
12 11 0.46
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (11 bp):
ATTTTATTATT
Found at i:8605966 original size:11 final size:12
Alignment explanation
Indices: 8605938--8605974 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8605928 AATGCACACA
8605938 TTTTATTATTGA-
1 TTTTATTATT-AT
8605950 TTTTATTA-TAT
1 TTTTATTATTAT
8605961 TTTTATTATTAT
1 TTTTATTATTAT
8605973 TT
1 TT
8605975 AAGTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 1 0.04
11 9 0.39
12 13 0.57
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:8607327 original size:1 final size:1
Alignment explanation
Indices: 8607321--8607383 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
8607311 AGCCACTGCC
* * * ** * * *
8607321 AAAAAAAGAAAAAAAACAACAAAAAAATGAAAAAAAAGAAAAAAAAGAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8607384 TAATAATAAT
Statistics
Matches: 47, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.02
Consensus pattern (1 bp):
A
Found at i:8607335 original size:9 final size:9
Alignment explanation
Indices: 8607321--8607383 Score: 81
Period size: 9 Copynumber: 6.6 Consensus size: 9
8607311 AGCCACTGCC
8607321 AAAAAAAGA
1 AAAAAAAGA
*
8607330 AAAAAAACAA
1 AAAAAAA-GA
8607340 CAAAAAAATGA
1 -AAAAAAA-GA
8607351 AAAAAAAGA
1 AAAAAAAGA
8607360 AAAAAAAGAA
1 AAAAAAAG-A
8607370 AAAAAAAGA
1 AAAAAAAGA
8607379 AAAAA
1 AAAAA
8607384 TAATAATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
9 23 0.48
10 17 0.35
11 8 0.17
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.02
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:8607336 original size:10 final size:10
Alignment explanation
Indices: 8607321--8607383 Score: 78
Period size: 10 Copynumber: 6.4 Consensus size: 10
8607311 AGCCACTGCC
8607321 AAAAAAAGAA
1 AAAAAAAGAA
8607331 AAAAAACA-ACA
1 AAAAAA-AGA-A
*
8607342 AAAAAATG-A
1 AAAAAAAGAA
8607351 AAAAAAAG-A
1 AAAAAAAGAA
8607360 AAAAAAAGAA
1 AAAAAAAGAA
8607370 AAAAAAAGAA
1 AAAAAAAGAA
8607380 AAAA
1 AAAA
8607384 TAATAATAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
9 17 0.36
10 22 0.47
11 8 0.17
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:8607376 original size:19 final size:19
Alignment explanation
Indices: 8607321--8607383 Score: 85
Period size: 19 Copynumber: 3.3 Consensus size: 19
8607311 AGCCACTGCC
8607321 AAAAAAAGAAAAAAAACA-A
1 AAAAAAAGAAAAAAAA-AGA
8607340 CAAAAAAATG-AAAAAAAAGA
1 -AAAAAAA-GAAAAAAAAAGA
8607360 AAAAAAAGAAAAAAAAAGA
1 AAAAAAAGAAAAAAAAAGA
8607379 AAAAA
1 AAAAA
8607384 TAATAATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
18 1 0.03
19 23 0.57
20 15 0.38
21 1 0.03
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.02
Consensus pattern (19 bp):
AAAAAAAGAAAAAAAAAGA
Found at i:8608261 original size:19 final size:20
Alignment explanation
Indices: 8608224--8608263 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8608214 ACTCTTTTTT
*
8608224 TTTTTTAGTATTTTGTTTGC
1 TTTTTTACTATTTTGTTTGC
8608244 TTTTTTACTATTTT-TTTGC
1 TTTTTTACTATTTTGTTTGC
8608263 T
1 T
8608264 ACTTTCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.72
Consensus pattern (20 bp):
TTTTTTACTATTTTGTTTGC
Found at i:8609320 original size:143 final size:143
Alignment explanation
Indices: 8609072--8609447 Score: 466
Period size: 143 Copynumber: 2.6 Consensus size: 143
8609062 TTTAAAACAT
* * * * *
8609072 CAAAAATTATGAAATATTATAAAATTGAGATTTGAAAAGTTTTATGAAAATTCGAGCTCGAAAAA
1 CAAAAATCATTAAATATTATAAAATTGAGATCTGAAAAG-TTTATGAAAATTCAAGCTCGAAAGA
* * *
8609137 GTTAAATTACGAAAATACCCCTATAAAGGTATTTTAGTAATTTCACACTTTCT-AGGGTACTGCT
65 -TCAAATTACGAAAATACTCCTATAAAGGTATTTTAGTAATTTCACA-TTTCTCAGGGTAATGCT
*
8609201 GTGATTTCAAATGCAC
128 GTAATTTCAAATGCAC
* * * * * *
8609217 CAAAAATCATTAAATATTTTGAAATTAAGATCTGAAAAGTTTGTGAAAATCCAAGCTCGAAAGAC
1 CAAAAATCATTAAATATTATAAAATTGAGATCTGAAAAGTTTATGAAAATTCAAGCTCGAAAGAT
* * * *
8609282 CAAATTACGAAAATACTCCTATAAAGGTATTTTGGTAATTTTACATTTTTCGGGGTAATGCTGTA
66 CAAATTACGAAAATACTCCTATAAAGGTATTTTAGTAATTTCACATTTCTCAGGGTAATGCTGTA
*
8609347 ATTTTAAATGCAC
131 ATTTCAAATGCAC
* ** * *
8609360 CAAAAATCATTAAATATTATAAAATTGAGATCTAAAAAGTTTCACAAAAATTCAAACTTAGAAAG
1 CAAAAATCATTAAATATTATAAAATTGAGATCTGAAAAGTTT-ATGAAAATTCAAGC-TCGAAAG
*
8609425 GTCAAATTACGAAAATACTCCTA
64 ATCAAATTACGAAAATACTCCTA
8609448 AAGTATATTT
Statistics
Matches: 196, Mismatches: 32, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
142 4 0.02
143 102 0.52
144 30 0.15
145 60 0.31
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (143 bp):
CAAAAATCATTAAATATTATAAAATTGAGATCTGAAAAGTTTATGAAAATTCAAGCTCGAAAGAT
CAAATTACGAAAATACTCCTATAAAGGTATTTTAGTAATTTCACATTTCTCAGGGTAATGCTGTA
ATTTCAAATGCAC
Found at i:8611305 original size:28 final size:29
Alignment explanation
Indices: 8611265--8611321 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
8611255 ATTACTCGAA
*
8611265 TTAAAATAATTTAA-ATTTTAATTATTAAAG
1 TTAAAAT-ATTTAATATTTT-ATTAATAAAG
8611295 TTAAAAT-TTTAATATTTTATTAATAAA
1 TTAAAATATTTAATATTTTATTAATAAA
8611322 TTACCCGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 13 0.52
29 5 0.20
30 7 0.28
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
TTAAAATATTTAATATTTTATTAATAAAG
Found at i:8614127 original size:2 final size:2
Alignment explanation
Indices: 8614082--8614112 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8614072 TGTGTGTGTC
8614082 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8614113 TCTTAATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8623073 original size:234 final size:234
Alignment explanation
Indices: 8622258--8623254 Score: 1097
Period size: 234 Copynumber: 4.3 Consensus size: 234
8622248 TTTAGACAAT
* * * *
8622258 GTTATAGTTTTGTCACAAAGTTAAAATTTTATCTGTGATAAATTTTTTCTGATAGATTTTAGGTG
1 GTTATAATTTTGTCACCAATTTAAAATTTTATCTGTGATAAATTTTTTCTAATAGATTTTAGGTG
* * * *
8622323 ACGTTATTAATTTTTGTTATAAATTAAATACTTTAGTTAACTATTAATGATATTGCAATTTCGTC
66 ACGTTATTAATTTTTGTCATAAATTGAATACTTTAGTTAACTATTAATGACATTACAATTTCGTC
* * * *
8622388 ATATCAATGTATGGTATTATATGACGATAATATAAATGTCACAAACTTTTATTGCCAAATTTATT
131 ACATCAATGTATGATATTATATGACGATAACATAAATATCACAAACTTTTATTGCCAAATTTATT
*
8622453 T-AGTGAAAAATTTTTTTGTTATATTTTTTATTTTAGGTGAC
196 TGA-TGAAAAATTTTTATG--ATATTTTTTATTTTAGGTGAC
** * * * *
8622494 GTT-TAAATTTTGTCACTGATTGAAAATTTTATCTATAATGAAA-TTTTTCTAATAGATTCTAGG
1 GTTAT-AATTTTGTCACCAATTTAAAATTTTATCTGTGAT-AAATTTTTTCTAATAGATTTTAGG
* * *
8622557 TGACGTTATCAAATTTTGTCATAAATAT-AGTACTTTAGTTAACTATTAATGACATTACAATTTC
64 TGACGTTATTAATTTTTGTCATAAAT-TGAATACTTTAGTTAACTATTAATGACATTACAATTTC
* * * * * *
8622621 GTCACTTTTATAT-TATGGTATTATATGACGATAACATAAATATTACAAACTTTTATTGTCAATT
128 GTCAC-ATCA-ATGTATGATATTATATGACGATAACATAAATATCACAAACTTTTATTGCCAAAT
* * *
8622685 TTATGT-AGTGAAAAATTTTTTAATGATTTTTTTTTTATTTTAAGTGAC
191 TTATTTGA-TGAAAAA-TTTTT-ATGA--TATTTTTTATTTTAGGTGAC
* * * * *
8622733 ATTATAATTGTGTCACTAATTTAAAATTTTATCTATGATGAA-----T-TAATAGATTTTAGGTG
1 GTTATAATTTTGTCACCAATTTAAAATTTTATCTGTGATAAATTTTTTCTAATAGATTTTAGGTG
* * * * **
8622792 ATGTGATTAATATTTGTCATAAATTGAATACTTTAGTTAACTATTAATGACATTGCAATTTATTC
66 ACGTTATTAATTTTTGTCATAAATTGAATACTTTAGTTAACTATTAATGACATTACAATTTCGTC
* * * * *
8622857 ACGTCAATGTATGATGTTATATGACAATAACATAAATGTCATAAACTTTTATCT-CCAAATTTAT
131 ACATCAATGTATGATATTATATGACGATAACATAAATATCACAAACTTTTAT-TGCCAAATTTAT
* *
8622921 TTGAT-AGGAAATTTTTATGATATTTTTTATTTTATGTGAC
195 TTGATGA-AAAATTTTTATGATATTTTTTATTTTAGGTGAC
* * * * * *
8622961 GTTATAATTTTCTCACCAATTTAAATTTTTATTTGTGACAAATTTTTTCTGATAGATTTTAAGTG
1 GTTATAATTTTGTCACCAATTTAAAATTTTATCTGTGATAAATTTTTTCTAATAGATTTTAGGTG
* * * *
8623026 ACATTATTAATTTTTGTCACAAATTGAATACTTTAGTTAACTATTAATGACATTATAATTTTGTC
66 ACGTTATTAATTTTTGTCATAAATTGAATACTTTAGTTAACTATTAATGACATTACAATTTCGTC
* * * * * * *
8623091 ACATCAATATTTGATGTTATATAACGATAACATAAATATCACAAACTTTTATCGTCAATTTTATT
131 ACATCAATGTATGATATTATATGACGATAACATAAATATCACAAACTTTTATTGCCAAATTTATT
* *
8623156 TGGTGAAAAATTCTTTATGACATTTTTTATTTTAGGTGAC
196 TGATGAAAAATT-TTTATGATATTTTTTATTTTAGGTGAC
** * *
8623196 GTTATAATTTAATCACCAATTTAAAATCTTATCTGTGATGAATTTTTTCTAATA-ATTTT
1 GTTATAATTTTGTCACCAATTTAAAATTTTATCTGTGATAAATTTTTTCTAATAGATTTT
8623255 TGTCACAAAT
Statistics
Matches: 638, Mismatches: 99, Indels: 50
0.81 0.13 0.06
Matches are distributed among these distances:
228 51 0.08
230 4 0.01
231 8 0.01
232 53 0.08
233 74 0.12
234 138 0.22
235 73 0.11
236 108 0.17
237 67 0.11
238 9 0.01
239 52 0.08
240 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (234 bp):
GTTATAATTTTGTCACCAATTTAAAATTTTATCTGTGATAAATTTTTTCTAATAGATTTTAGGTG
ACGTTATTAATTTTTGTCATAAATTGAATACTTTAGTTAACTATTAATGACATTACAATTTCGTC
ACATCAATGTATGATATTATATGACGATAACATAAATATCACAAACTTTTATTGCCAAATTTATT
TGATGAAAAATTTTTATGATATTTTTTATTTTAGGTGAC
Found at i:8623684 original size:19 final size:19
Alignment explanation
Indices: 8623660--8623698 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8623650 AAAATTTTTG
8623660 TTAAAAGAAAT-TTTTTAAA
1 TTAAAA-AAATATTTTTAAA
*
8623679 TTAAAAAATTATTTTTAAA
1 TTAAAAAAATATTTTTAAA
8623698 T
1 T
8623699 ATATATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TTAAAAAAATATTTTTAAA
Found at i:8627536 original size:15 final size:16
Alignment explanation
Indices: 8627510--8627539 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8627500 CCACGTGCCA
8627510 ACCAATAATATACATT
1 ACCAATAATATACATT
8627526 ACCAA-AATATACAT
1 ACCAATAATATACAT
8627540 ATTTTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (16 bp):
ACCAATAATATACATT
Found at i:8627591 original size:6 final size:6
Alignment explanation
Indices: 8627571--8627616 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
8627561 AATTATATAA
* *
8627571 ATACAA ATACAT ATACGT ATACAT ATACAT AT--AT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
8627617 GTATATATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
4 4 0.11
6 31 0.89
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:8627629 original size:16 final size:16
Alignment explanation
Indices: 8627565--8627623 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
8627555 AACATTAATT
* *
8627565 ATATAAATACAAATAC
1 ATATATATACATATAC
8627581 ATATACGTATACATATAC
1 ATATA--TATACATATAC
8627599 ATATATATACATATAC
1 ATATATATACATATAC
*
8627615 ATGTATATA
1 ATATATATA
8627624 TGTATATGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 24 0.63
18 14 0.37
ACGTcount: A:0.51, C:0.12, G:0.03, T:0.34
Consensus pattern (16 bp):
ATATATATACATATAC
Done.