Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 43 of 129
Found at i:8636055 original size:13 final size:13
Alignment explanation
Indices: 8636037--8636079 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
8636027 AAAATTTTAT
*
8636037 AAAATAGTCAATA
1 AAAATAATCAATA
8636050 AAAATACA-CAAGTA
1 AAAATA-ATCAA-TA
8636064 AAAATAATCAATA
1 AAAATAATCAATA
8636077 AAA
1 AAA
8636080 CAGATAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.67, C:0.09, G:0.05, T:0.19
Consensus pattern (13 bp):
AAAATAATCAATA
Found at i:8636939 original size:3 final size:3
Alignment explanation
Indices: 8636931--8637005 Score: 50
Period size: 3 Copynumber: 26.0 Consensus size: 3
8636921 AGGAAGAAAA
* * ** *
8636931 AAT AAT AAT AAT AAT AAT CAT AAT AGT AAT -AT GGT -AT AAT -AG AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
8636976 AAT GAT AA- ATAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
8637006 TTACTATATA
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
2 5 0.09
3 49 0.89
4 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8637016 original size:15 final size:17
Alignment explanation
Indices: 8636998--8637037 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
8636988 AATAATAGTA
8636998 ATAATA-ATT-TACTAT
1 ATAATATATTATACTAT
8637013 ATAATATATTATACTAT
1 ATAATATATTATACTAT
*
8637030 ATGATATA
1 ATAATATA
8637038 ATAATACTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.27
16 3 0.14
17 13 0.59
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (17 bp):
ATAATATATTATACTAT
Found at i:8637411 original size:54 final size:54
Alignment explanation
Indices: 8637340--8637461 Score: 156
Period size: 54 Copynumber: 2.3 Consensus size: 54
8637330 ATGATACTAC
*
8637340 GAGTTTGAAAATGATCTGGCCTAAATCAAGAGTAAATAACCTG-GATGATGCCAT
1 GAGTTTAAAAATGATCTGGCCTAAATCAAGAGTAAATAA-CTGAGATGATGCCAT
* * * * *
8637394 GAGTTTAAAAATGATCTGGCCTGAATCGAGATTAGATGACTGAGATGATGCCAT
1 GAGTTTAAAAATGATCTGGCCTAAATCAAGAGTAAATAACTGAGATGATGCCAT
* *
8637448 GAGTCTAGAAATGA
1 GAGTTTAAAAATGA
8637462 CCAAGATCGA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
53 3 0.05
54 56 0.95
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (54 bp):
GAGTTTAAAAATGATCTGGCCTAAATCAAGAGTAAATAACTGAGATGATGCCAT
Found at i:8637588 original size:114 final size:113
Alignment explanation
Indices: 8637441--8637702 Score: 271
Period size: 114 Copynumber: 2.3 Consensus size: 113
8637431 GACTGAGATG
* ** *
8637441 ATGCCATGAGTCTAGAAA-TGACCAAGATCGAGTCAAAATTGTAAATGAATGATCGAGATGATA-
1 ATGCCACGAGTCTA-AAAGTGACCAAGATCGAGTCAAAATCATAAATGAATGATCAAGATGATAC
* * * * *
8637504 TCATGAAT-TTGAAAATAATTTGGTTTGAGCTAAGATCGGATGACTGGGACA
65 TC--GAATCTTG-AAATAATATAGTCTGAGCTAAGATCAGATGACTAGGACA
* * * **
8637555 ATGTCGCGAGTCTAAAAGTGACCTAGA-CTGAGTCAATGTCATAAATGAATGATCAAGATGATAC
1 ATGCCACGAGTCTAAAAGTGACCAAGATC-GAGTCAAAATCATAAATGAATGATCAAGATGATAC
* * *
8637619 TGCGAGTCTTGAAATGATATAGTCTGAGCTGAGATCAGATGACTAGGACA
65 T-CGAATCTTGAAATAATATAGTCTGAGCTAAGATCAGATGACTAGGACA
* *
8637669 ATGCCACAAGTCTAAAAGTGACCAGGATCGAGTC
1 ATGCCACGAGTCTAAAAGTGACCAAGATCGAGTC
8637703 GAGGTCATAG
Statistics
Matches: 120, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
113 4 0.03
114 110 0.92
115 5 0.04
116 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (113 bp):
ATGCCACGAGTCTAAAAGTGACCAAGATCGAGTCAAAATCATAAATGAATGATCAAGATGATACT
CGAATCTTGAAATAATATAGTCTGAGCTAAGATCAGATGACTAGGACA
Found at i:8638074 original size:114 final size:114
Alignment explanation
Indices: 8637795--8638176 Score: 317
Period size: 114 Copynumber: 3.4 Consensus size: 114
8637785 GTTGTGAATT
* * * *** *
8637795 TGAAAGTGACCTAGATCGAGTCAAGGTCATAGATGAATGATGGGGATGACGTTATGAGTTTTGAA
1 TGAAAGTGACCAAGATCGAGTCAAGGTCATAGATGAATGATCGAGATGATACTATGAGTCTTGAA
* * * * * * * * * *
8637860 ATGATTTGGCCTGAGCCAAAATT-GAATAATTGGGATGATGTCGTGAGTT
66 ATGATCTAGCTTAAGTCAAGATTAG-ATAATTGGAATGATATCATGAGTC
* * * * * *
8637909 TGAAAGTTACCTAGA-CTAAGTCAAGGTCATAGATGAATGA-CTGATACGATACTGTGAGTCTTG
1 TGAAAGTGACCAAGATC-GAGTCAAGGTCATAGATGAATGATC-GAGATGATACTATGAGTCTTG
* * *
8637972 AAATGATCTAGTTTAAGTCAAGATTAGATAATTGGAATGATACCAAGAGTC
64 AAATGATCTAGCTTAAGTCAAGATTAGATAATTGGAATGATATCATGAGTC
* * * ** **
8638023 TGAAAGTGACCAAGATCGAGTCAAGCTCATAGATGAATGATCGAGATGATACCATGAATCAAGGT
1 TGAAAGTGACCAAGATCGAGTCAAGGTCATAGATGAATGATCGAGATGATACTATGAGTCTTGAA
* *
8638088 ATGATCTAGCCTGAA-TCAAGATCAGATAATT-GAGATGA-AGTCATGAGTC
66 ATGATCTAG-CTTAAGTCAAGATTAGATAATTGGA-ATGATA-TCATGAGTC
* * **
8638137 TGAGAGTGACCAAGACCGAGTTGAGGTCATAGATGAATGA
1 TGAAAGTGACCAAGATCGAGTCAAGGTCATAGATGAATGA
8638177 CTGAGACAAT
Statistics
Matches: 213, Mismatches: 47, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
113 4 0.02
114 203 0.95
115 6 0.03
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (114 bp):
TGAAAGTGACCAAGATCGAGTCAAGGTCATAGATGAATGATCGAGATGATACTATGAGTCTTGAA
ATGATCTAGCTTAAGTCAAGATTAGATAATTGGAATGATATCATGAGTC
Found at i:8638940 original size:17 final size:17
Alignment explanation
Indices: 8638918--8638950 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8638908 CTCTTTTTAT
*
8638918 TTTTTTGTTTTTGTTTG
1 TTTTTTCTTTTTGTTTG
8638935 TTTTTTCTTTTTGTTT
1 TTTTTTCTTTTTGTTT
8638951 CAAGCCGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (17 bp):
TTTTTTCTTTTTGTTTG
Found at i:8641986 original size:15 final size:16
Alignment explanation
Indices: 8641966--8642000 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8641956 AATTAAAAAT
*
8641966 AAAAATG-AAAAATAA
1 AAAAATGTAAAAACAA
8641981 AAAAATGTAAAAACAA
1 AAAAATGTAAAAACAA
8641997 AAAA
1 AAAA
8642001 TTAGGAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.80, C:0.03, G:0.06, T:0.11
Consensus pattern (16 bp):
AAAAATGTAAAAACAA
Found at i:8644951 original size:18 final size:17
Alignment explanation
Indices: 8644924--8644957 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8644914 AGTTACAACC
*
8644924 AAAAGTAAAAGGAAAAAA
1 AAAAG-AAAAAGAAAAAA
8644942 AAAAGAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
8644958 CCCAACTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAAA
Found at i:8656062 original size:21 final size:20
Alignment explanation
Indices: 8656038--8656077 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
8656028 TTATGCGATT
8656038 CATG-TTAATTTGTTCTATTTG
1 CATGTTTAA-TTGTT-TATTTG
8656059 CATGTTTAATTGTTTATTT
1 CATGTTTAATTGTTTATTT
8656078 AGGTTACTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.20, C:0.07, G:0.12, T:0.60
Consensus pattern (20 bp):
CATGTTTAATTGTTTATTTG
Found at i:8659517 original size:29 final size:31
Alignment explanation
Indices: 8659484--8659550 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 31
8659474 AATTATTATC
8659484 ATAATAAAAATTAA-AAAATAT-TTCAAAAT
1 ATAATAAAAATTAATAAAATATATTCAAAAT
*
8659513 ATAAT---ATTTAATAAAATATATTCAAAAT
1 ATAATAAAAATTAATAAAATATATTCAAAAT
8659541 AT-ATAAAAAT
1 ATAATAAAAAT
8659551 CAATTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
26 5 0.16
27 9 0.29
28 10 0.32
29 5 0.16
30 2 0.06
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (31 bp):
ATAATAAAAATTAATAAAATATATTCAAAAT
Found at i:8659958 original size:21 final size:20
Alignment explanation
Indices: 8659929--8659973 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
8659919 AATTTTTTGG
*
8659929 TTTTTAAAATG-ATATTGAAT
1 TTTTTAAAAAGAAT-TTGAAT
8659949 TTTTTAAAAAAGAATTTGAAT
1 TTTTT-AAAAAGAATTTGAAT
8659970 TTTT
1 TTTT
8659974 AACTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 15 0.68
22 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (20 bp):
TTTTTAAAAAGAATTTGAAT
Found at i:8660052 original size:15 final size:15
Alignment explanation
Indices: 8660004--8660055 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
8659994 AATTTTCTAT
*
8660004 TAAAAACAAAACATA
1 TAAAAACAAAAAATA
* * **
8660019 TAATTAATAAATTATA
1 TAA-AAACAAAAAATA
8660035 TAAAAACAAAAAATA
1 TAAAAACAAAAAATA
8660050 TAAAAA
1 TAAAAA
8660056 TATAATTTTA
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
15 17 0.61
16 11 0.39
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (15 bp):
TAAAAACAAAAAATA
Found at i:8666950 original size:15 final size:15
Alignment explanation
Indices: 8666930--8666963 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8666920 ATTGATTGGT
* *
8666930 ATAAAAATTATATAA
1 ATAAAAAATATAAAA
8666945 ATAAAAAATATAAAA
1 ATAAAAAATATAAAA
8666960 ATAA
1 ATAA
8666964 TATAATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAAAATATAAAA
Found at i:8666982 original size:18 final size:19
Alignment explanation
Indices: 8666961--8667014 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
8666951 AATATAAAAA
8666961 TAATATAATTTAAAT-T-TT
1 TAATA-AATTTAAATATATT
8666979 TAATAAAATTATAAATATATT
1 TAAT-AAATT-TAAATATATT
*
8667000 TAATAAAATTAAATA
1 TAATAAATTTAAATA
8667015 AATTATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 8 0.26
19 12 0.39
20 5 0.16
21 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATAAATTTAAATATATT
Found at i:8667001 original size:21 final size:21
Alignment explanation
Indices: 8666961--8667024 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
8666951 AATATAAAAA
*
8666961 TAATATAATT-TAAAT-T-TT
1 TAATAAAATTATAAATATATT
8666979 TAATAAAATTATAAATATATT
1 TAATAAAATTATAAATATATT
8667000 TAATAAAATTAAATAAATTATATT
1 TAATAAAATT--ATAAA-TATATT
8667024 T
1 T
8667025 TATATTTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
18 9 0.23
19 5 0.13
20 1 0.03
21 12 0.31
23 5 0.13
24 7 0.18
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATAAAATTATAAATATATT
Found at i:8667063 original size:13 final size:12
Alignment explanation
Indices: 8667039--8667084 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
8667029 TTTTTATATG
8667039 AATATAAATTTT
1 AATATAAATTTT
8667051 AATATATAATTTT
1 AATATA-AATTTT
* *
8667064 AATATAAAATAT
1 AATATAAATTTT
8667076 AATATAAAT
1 AATATAAAT
8667085 ATAATATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
12 18 0.60
13 12 0.40
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
AATATAAATTTT
Found at i:8667077 original size:18 final size:18
Alignment explanation
Indices: 8667034--8667088 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
8667024 TTATATTTTT
* *
8667034 ATATGAATATAAATTTTAAT
1 ATAT-AATATAAA-TATAAA
* *
8667054 ATATAATTTTAATATAAA
1 ATATAATATAAATATAAA
8667072 ATATAATATAAATATAA
1 ATATAATATAAATATAA
8667089 TATTTTATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
18 19 0.66
19 6 0.21
20 4 0.14
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (18 bp):
ATATAATATAAATATAAA
Found at i:8668039 original size:14 final size:15
Alignment explanation
Indices: 8668015--8668050 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
8668005 GGGAGAGCAT
8668015 ATTAT-TTATAA-TA
1 ATTATATTATAATTA
8668028 ATTATATTATAATTA
1 ATTATATTATAATTA
8668043 ATTA-ATTA
1 ATTATATTA
8668051 ATTAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.24
14 10 0.48
15 6 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTATATTATAATTA
Found at i:8673931 original size:8 final size:8
Alignment explanation
Indices: 8673918--8673960 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
8673908 AATGATAGTA
8673918 AAAAAAAT
1 AAAAAAAT
**
8673926 AAAAAAGC
1 AAAAAAAT
8673934 AACAAAAAT
1 AA-AAAAAT
*
8673943 AAAAAAGT
1 AAAAAAAT
8673951 AAAAAAAT
1 AAAAAAAT
8673959 AA
1 AA
8673961 TTTCAACCTG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
8 22 0.79
9 6 0.21
ACGTcount: A:0.81, C:0.05, G:0.05, T:0.09
Consensus pattern (8 bp):
AAAAAAAT
Found at i:8673946 original size:16 final size:16
Alignment explanation
Indices: 8673918--8673960 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
8673908 AATGATAGTA
8673918 AAAAAAATAAAAAAGC
1 AAAAAAATAAAAAAGC
*
8673934 AACAAAAATAAAAAAGT
1 AA-AAAAATAAAAAAGC
8673951 AAAAAAATAA
1 AAAAAAATAA
8673961 TTTCAACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.81, C:0.05, G:0.05, T:0.09
Consensus pattern (16 bp):
AAAAAAATAAAAAAGC
Found at i:8675292 original size:4 final size:4
Alignment explanation
Indices: 8675285--8675320 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
8675275 TAAATGACTA
* *
8675285 AAAT AAAT AAAT AAAT AACT AAAA AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
8675321 GTGTTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:8679355 original size:14 final size:13
Alignment explanation
Indices: 8679335--8679376 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
8679325 TTAGATCTTT
8679335 AAAAGAAGAAAAA
1 AAAAGAAGAAAAA
* *
8679348 AGAAAGAACAAAAT
1 A-AAAGAAGAAAAA
8679362 AAAAGAAGAAAAA
1 AAAAGAAGAAAAA
8679375 AA
1 AA
8679377 TAAACAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.81, C:0.02, G:0.14, T:0.02
Consensus pattern (13 bp):
AAAAGAAGAAAAA
Found at i:8679376 original size:16 final size:17
Alignment explanation
Indices: 8679345--8679380 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
8679335 AAAAGAAGAA
*
8679345 AAAAGAAAGAACAAAAT
1 AAAAGAAAGAAAAAAAT
8679362 AAAAG-AAGAAAAAAAT
1 AAAAGAAAGAAAAAAAT
8679378 AAA
1 AAA
8679381 CAAAATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.81, C:0.03, G:0.11, T:0.06
Consensus pattern (17 bp):
AAAAGAAAGAAAAAAAT
Found at i:8681720 original size:20 final size:20
Alignment explanation
Indices: 8681695--8681736 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
8681685 AAACTTTTAT
8681695 TAAAACTCTCTCGATGGTGA
1 TAAAACTCTCTCGATGGTGA
8681715 TAAAACTCTCTCGATGGTGA
1 TAAAACTCTCTCGATGGTGA
8681735 TA
1 TA
8681737 TATGAGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (20 bp):
TAAAACTCTCTCGATGGTGA
Found at i:8681816 original size:67 final size:67
Alignment explanation
Indices: 8681745--8681940 Score: 225
Period size: 67 Copynumber: 2.9 Consensus size: 67
8681735 TATATGAGCT
* * * *
8681745 TTCAATCAAACTTTCTA-GGTAGTGATATCTGAGTTTTTATCAAAACTTTTGATGGTGATATCCA
1 TTCAATCAAACTCTC-ACGGTAGTGATATATGAGCTTTTATCAAAACTCTTGATGGTGATATCCA
8681809 ACC
65 ACC
* * *
8681812 TTCAATCAAACTCTCACGGTGGTGGTATATGAGCTTTTATCAAAACTCTTGGTGGTGATATCCAA
1 TTCAATCAAACTCTCACGGTAGTGATATATGAGCTTTTATCAAAACTCTTGATGGTGATATCCAA
*
8681877 CT
66 CC
* * * * * * *
8681879 TTCAATCAAACTCTCTCGATAATGATAT-TCAAACTTTTATCAAAACTCTTAATAGTGATATC
1 TTCAATCAAACTCTCACGGTAGTGATATAT-GAGCTTTTATCAAAACTCTTGATGGTGATATC
8681941 TGAGCTTTAA
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
66 2 0.02
67 107 0.98
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (67 bp):
TTCAATCAAACTCTCACGGTAGTGATATATGAGCTTTTATCAAAACTCTTGATGGTGATATCCAA
CC
Found at i:8681887 original size:33 final size:32
Alignment explanation
Indices: 8681787--8681892 Score: 90
Period size: 32 Copynumber: 3.2 Consensus size: 32
8681777 GTTTTTATCA
* * *
8681787 AAACTTTTGATGGTGATATCCAACCTTCAATC
1 AAACTCTTGGTGGTGATATCCAACTTTCAATC
* * * *
8681819 AAACTCTCACGGTGGTGGTATAT-GAGCTTT-TATC
1 AAACTCT--TGGTGGT-G-ATATCCAACTTTCAATC
8681853 AAAACTCTTGGTGGTGATATCCAACTTTCAATC
1 -AAACTCTTGGTGGTGATATCCAACTTTCAATC
8681886 AAACTCT
1 AAACTCT
8681893 CTCGATAATG
Statistics
Matches: 56, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
31 4 0.07
32 19 0.34
33 9 0.16
34 8 0.14
35 12 0.21
36 4 0.07
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (32 bp):
AAACTCTTGGTGGTGATATCCAACTTTCAATC
Found at i:8681954 original size:33 final size:33
Alignment explanation
Indices: 8681731--8681955 Score: 82
Period size: 33 Copynumber: 6.7 Consensus size: 33
8681721 TCTCTCGATG
* * *
8681731 GTGATATATGAGCTTTCAATC-AAACTTTCTAGGTA
1 GTGATATCTGAGCTTT-AATCAAAACTCT-TA-ATA
* * * * *
8681766 GTGATATCTGAGTTTTTATCAAAACTTTTGATG
1 GTGATATCTGAGCTTTAATCAAAACTCTTAATA
** * * * * *
8681799 GTGATATCCAACCTTCAATC-AAACTCTCACGGTG
1 GTGATATCTGAGCTTTAATCAAAACTCTTA--ATA
* * * ** *
8681833 GTGGTATATGAGCTTTTATCAAAACTCTTGGTG
1 GTGATATCTGAGCTTTAATCAAAACTCTTAATA
* * *
8681866 GTGATATC-CAACTTTCAATC-AAACTCTCTCGATA
1 GTGATATCTGAGCTTT-AATCAAAACTCT-T-AATA
* * * *
8681900 ATGATAT-TCAAACTTTTATCAAAACTCTTAATA
1 GTGATATCT-GAGCTTTAATCAAAACTCTTAATA
8681933 GTGATATCTGAGCTTTAATCAAA
1 GTGATATCTGAGCTTTAATCAAA
8681956 TTTACTTGGT
Statistics
Matches: 139, Mismatches: 40, Indels: 24
0.68 0.20 0.12
Matches are distributed among these distances:
32 18 0.13
33 48 0.35
34 32 0.23
35 41 0.29
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (33 bp):
GTGATATCTGAGCTTTAATCAAAACTCTTAATA
Found at i:8682330 original size:33 final size:33
Alignment explanation
Indices: 8682278--8682418 Score: 90
Period size: 33 Copynumber: 4.1 Consensus size: 33
8682268 GGAATCCTTC
8682278 AAATATCATCT-CCTCTGGTTAAAAGAATTTTTT
1 AAATATCAT-TGCCTCTGGTTAAAAGAATTTTTT
* * * *
8682311 AAATATCATTGCCTTTGGTTAGAGGAGTTTTTGT
1 AAATATCATTGCCTCTGGTTAAAAGAATTTTT-T
* * * **
8682345 AAAGTCTCATTACCT-TTGTTGAAATGAGTTTTTTTTT
1 AAA-TATCATTGCCTCTGGTT-AAA--AG-AATTTTTT
* *
8682382 AAGTCTCATTGCCTCTGGTT-AAAGAACTTTTTT
1 AAATATCATTGCCTCTGGTTAAAAGAA-TTTTTT
8682415 AAAT
1 AAAT
8682419 TTAAAAGCTT
Statistics
Matches: 82, Mismatches: 17, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
32 1 0.01
33 37 0.45
34 8 0.10
35 13 0.16
36 10 0.12
37 8 0.10
38 5 0.06
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.45
Consensus pattern (33 bp):
AAATATCATTGCCTCTGGTTAAAAGAATTTTTT
Found at i:8682362 original size:35 final size:36
Alignment explanation
Indices: 8682316--8682414 Score: 103
Period size: 36 Copynumber: 2.8 Consensus size: 36
8682306 TTTTTAAATA
*
8682316 TCATTGCCTTTGGTTAGAGGAG-TTTTTGTAAAGTC
1 TCATTGCCTTTGGTTAAAGGAGTTTTTTGTAAAGTC
* * * *
8682351 TCATTACCTTT-GTTGAAATGAGTTTTTTTTTAAGTC
1 TCATTGCCTTTGGTT-AAAGGAGTTTTTTGTAAAGTC
* * *
8682387 TCATTGCCTCTGGTTAAAGAACTTTTTT
1 TCATTGCCTTTGGTTAAAGGAGTTTTTT
8682415 AAATTTAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
34 3 0.06
35 15 0.29
36 30 0.59
37 3 0.06
ACGTcount: A:0.21, C:0.13, G:0.18, T:0.47
Consensus pattern (36 bp):
TCATTGCCTTTGGTTAAAGGAGTTTTTTGTAAAGTC
Found at i:8682540 original size:33 final size:34
Alignment explanation
Indices: 8682502--8682574 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
8682492 CTTTTCAGAC
* **
8682502 TTTTTTAAAGTCTTATAACTTTTGGTTAAAGGAG
1 TTTTTAAAAGTCTTATAACTTTTGGTTAAAAAAG
**
8682536 TTTTTAAAAGTCTTATAGTTTTTGGTTAAAAAAG
1 TTTTTAAAAGTCTTATAACTTTTGGTTAAAAAAG
8682570 TTTTT
1 TTTTT
8682575 TTAAAATATC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (34 bp):
TTTTTAAAAGTCTTATAACTTTTGGTTAAAAAAG
Found at i:8682540 original size:34 final size:34
Alignment explanation
Indices: 8682502--8682621 Score: 105
Period size: 35 Copynumber: 3.5 Consensus size: 34
8682492 CTTTTCAGAC
**
8682502 TTTTTTAAAGTCTTATAACTTTTGGTTAAAGGAG
1 TTTTTTAAAGTCTTATAACTTTTGGTTAAAAAAG
* **
8682536 TTTTTAAAAGTCTTATAGTTTTTGGTTAAAAAAG
1 TTTTTTAAAGTCTTATAACTTTTGGTTAAAAAAG
* * * * * * *
8682570 TTTTTTTAAAATATCATAGCCTTTGTTTAGAAAAG
1 -TTTTTTAAAGTCTTATAACTTTTGGTTAAAAAAG
*
8682605 TTTTTTTAAAATCTTAT
1 -TTTTTTAAAGTCTTAT
8682622 TGTCTCTAGT
Statistics
Matches: 70, Mismatches: 15, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
34 29 0.41
35 41 0.59
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49
Consensus pattern (34 bp):
TTTTTTAAAGTCTTATAACTTTTGGTTAAAAAAG
Found at i:8682635 original size:35 final size:35
Alignment explanation
Indices: 8682536--8682680 Score: 130
Period size: 35 Copynumber: 4.1 Consensus size: 35
8682526 GTTAAAGGAG
* * * *
8682536 TTTTTAAAAGTCTTATAGTTTTTGGTTAAAAAAGTT
1 TTTTTAAAA-TCTCATAGTCTCTGGTTAGAAAAGTT
* * * *
8682572 TTTTTAAAATATCATAGCCTTTGTTTAGAAAAGTT
1 TTTTTAAAATCTCATAGTCTCTGGTTAGAAAAGTT
* * * **
8682607 TTTTTAAAATCTTATTGTCTCTAGTTAGATGAGTT
1 TTTTTAAAATCTCATAGTCTCTGGTTAGAAAAGTT
**
8682642 TTTTTAAAATCTCATTA-TCTCTGGTTAGAGGAGTT
1 TTTTTAAAATCTCA-TAGTCTCTGGTTAGAAAAGTT
8682677 TTTT
1 TTTT
8682681 AAATTTAAAA
Statistics
Matches: 89, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
35 79 0.89
36 10 0.11
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.50
Consensus pattern (35 bp):
TTTTTAAAATCTCATAGTCTCTGGTTAGAAAAGTT
Found at i:8682779 original size:267 final size:267
Alignment explanation
Indices: 8682293--8682928 Score: 637
Period size: 267 Copynumber: 2.4 Consensus size: 267
8682283 TCATCTCCTC
* ** *
8682293 TGGTTAAAAGAA--TTTTTT-AAATATCATTGCCTTTGGTTAGAGGAGTTTTTGTAAAGTCTCAT
1 TGGTTAAAA-AAGTTTTTTTAAAATATCATAGCCTTTGGTTAGAAAAGTTTTTGTAAAATCTCAT
* * * *
8682355 TACCTTTGTTGAAATGAGTTTTTTTTTAAGTCTCATTGCCTCTGGTTAAAGAACTTTTTTAAATT
65 TACCTTAGTTGAAATGAGTTTTTTTTAAAATCTCATTACCTCTGGTTAAAGAACTTTTTTAAATT
* * * * *
8682420 TAAAAGCTTCTAATTAGAGGATTCTTTAAAAATTAGCATGATTTGTAAGATCAAAAGGTATAATT
130 TAAAAGCCTCTAATTAGAGGACTATTTAAAAATTAGCATAATTTGTAAGATCAAAAGGCATAATT
* * ** * * * * * *
8682485 TTAAGACCTTTTCAGACTTTTTTAAAGTCTTATAACTTTTGGTTAAAGGAGTTTTTAAAAGTCTT
195 ATAAGACCTTTTCAAAAATTTTTAAAGTCTCATAACTTCTAGTTAAAAGAGTTTTTAAAAATCTC
**
8682550 ATAGTTTT
260 ATAGCCTT
* * *
8682558 TGGTTAAAAAAGTTTTTTTAAAATATCATAGCCTTTGTTTAGAAAAGTTTTTTTAAAATCTTATT
1 TGGTTAAAAAAGTTTTTTTAAAATATCATAGCCTTTGGTTAGAAAAGTTTTTGTAAAATCTCATT
** * * * * *
8682623 GTCTCTAGTT-AGATGAG-TTTTTTTAAAATCTCATTATCTCTGGTTAGAGGAGTTTTTTAAATT
66 ACCT-TAGTTGAAATGAGTTTTTTTTAAAATCTCATTACCTCTGGTTAAAGAACTTTTTTAAATT
* * * * *
8682686 TAAAAGCCTCTAGTTAGAGGACTATTTCAACATTAGGTATAATTTGTAATATCAAAAGGCATAAT
130 TAAAAGCCTCTAATTAGAGGACTATTTAAAAATTA-GCATAATTTGTAAGATCAAAAGGCATAAT
* *
8682751 ATATAAGATC-TTTCAAAAATTTTTAAAGTCTCATAGCTTCTAGTTAAAAGAGTTTTTAAAAATC
194 -TATAAGACCTTTTCAAAAATTTTTAAAGTCTCATAACTTCTAGTTAAAAGAGTTTTTAAAAATC
8682815 TCATAGCCTT
258 TCATAGCCTT
* * ** * * ** * * *
8682825 TAGTTAGAGGAGTTTTTTTAAAGTATTATAATCTCTGGTTAGAAAAGTTTTT-AAAAATATCA-T
1 TGGTTAAAAAAGTTTTTTTAAAATATCATAGCCTTTGGTTAGAAAAGTTTTTGTAAAATCTCATT
* **
8682888 AGCCTTTGATT-AAATGA-TTTTTTTTAAGGT-TCATTACCTCT
66 A-CCTTAG-TTGAAATGAGTTTTTTTTAAAATCTCATTACCTCT
8682929 AGCTAAAAGA
Statistics
Matches: 300, Mismatches: 62, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
264 2 0.01
265 22 0.07
266 100 0.33
267 165 0.55
268 11 0.04
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (267 bp):
TGGTTAAAAAAGTTTTTTTAAAATATCATAGCCTTTGGTTAGAAAAGTTTTTGTAAAATCTCATT
ACCTTAGTTGAAATGAGTTTTTTTTAAAATCTCATTACCTCTGGTTAAAGAACTTTTTTAAATTT
AAAAGCCTCTAATTAGAGGACTATTTAAAAATTAGCATAATTTGTAAGATCAAAAGGCATAATTA
TAAGACCTTTTCAAAAATTTTTAAAGTCTCATAACTTCTAGTTAAAAGAGTTTTTAAAAATCTCA
TAGCCTT
Found at i:8682820 original size:34 final size:33
Alignment explanation
Indices: 8682770--8682841 Score: 92
Period size: 34 Copynumber: 2.2 Consensus size: 33
8682760 CTTTCAAAAA
*
8682770 TTTTTAAAGTCTCATAG-CTTCTAGTTAAAAGAG
1 TTTTTAAAATCTCATAGCCTT-TAGTTAAAAGAG
* *
8682803 TTTTTAAAAATCTCATAGCCTTTAGTTAGAGGAG
1 TTTTT-AAAATCTCATAGCCTTTAGTTAAAAGAG
8682837 TTTTT
1 TTTTT
8682842 TTAAAGTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 5 0.15
34 26 0.76
35 3 0.09
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (33 bp):
TTTTTAAAATCTCATAGCCTTTAGTTAAAAGAG
Found at i:8683520 original size:16 final size:17
Alignment explanation
Indices: 8683499--8683534 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8683489 CAGCCTCTAA
8683499 AGAGAGA-GCAATTCAC
1 AGAGAGATGCAATTCAC
*
8683515 AGAGAGATGCAATTGAC
1 AGAGAGATGCAATTCAC
8683532 AGA
1 AGA
8683535 AACACCCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.44, C:0.14, G:0.28, T:0.14
Consensus pattern (17 bp):
AGAGAGATGCAATTCAC
Found at i:8688103 original size:17 final size:17
Alignment explanation
Indices: 8688081--8688117 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8688071 TACAATTATA
* *
8688081 ATTTGAATAATTTTGAT
1 ATTTGAATAAATTTAAT
8688098 ATTTGAATAAATTTAAT
1 ATTTGAATAAATTTAAT
8688115 ATT
1 ATT
8688118 ATTCAATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (17 bp):
ATTTGAATAAATTTAAT
Found at i:8688516 original size:2 final size:2
Alignment explanation
Indices: 8688509--8688533 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8688499 CGGAAATGTT
8688509 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8688534 TATGATTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8689707 original size:2 final size:2
Alignment explanation
Indices: 8689700--8689728 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8689690 TTAATTAATA
8689700 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8689729 AACTACACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8690225 original size:2 final size:2
Alignment explanation
Indices: 8690213--8690260 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
8690203 CTGCTTCAAT
*
8690213 TA TA T- TA TA TA TA GA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8690254 T- TA TA TA
1 TA TA TA TA
8690261 GGGCAATGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8691013 original size:2 final size:2
Alignment explanation
Indices: 8691006--8691040 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8690996 AAAATATACT
8691006 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8691041 TAGATAAACG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8691205 original size:15 final size:15
Alignment explanation
Indices: 8691185--8691215 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8691175 TCAACATGCT
8691185 TTACGTGTATATATA
1 TTACGTGTATATATA
8691200 TTACGTGTATATATA
1 TTACGTGTATATATA
8691215 T
1 T
8691216 ATATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (15 bp):
TTACGTGTATATATA
Found at i:8691212 original size:2 final size:2
Alignment explanation
Indices: 8691207--8691231 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8691197 ATATTACGTG
8691207 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8691232 CAAACATCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8692383 original size:4 final size:4
Alignment explanation
Indices: 8692374--8692399 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8692364 CTTTCAAGAA
8692374 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
8692400 TACCAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:8693653 original size:13 final size:12
Alignment explanation
Indices: 8693611--8693653 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
8693601 TTATTCAATG
8693611 TAAAATTTTTAT
1 TAAAATTTTTAT
8693623 TAAAATTTTTAAT
1 TAAAATTTTT-AT
* *
8693636 AAAAATATTTACT
1 TAAAATTTTTA-T
8693649 TAAAA
1 TAAAA
8693654 AATATATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (12 bp):
TAAAATTTTTAT
Found at i:8694193 original size:20 final size:21
Alignment explanation
Indices: 8694147--8694194 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
8694137 AACTTTACAC
*
8694147 ATTTT-ATTTATGTAAAATAT
1 ATTTTAATTTATATAAAATAT
*
8694167 ATTTTAATTTATATTAAAT-T
1 ATTTTAATTTATATAAAATAT
8694187 ATTTTAAT
1 ATTTTAAT
8694195 AAAAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTAATTTATATAAAATAT
Found at i:8698049 original size:26 final size:26
Alignment explanation
Indices: 8697995--8698051 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
8697985 TTGGTTAATT
* *
8697995 TTTTTTTCTTTTTATTTTTGTTTTAA
1 TTTTTGTCTTTTTATTTTTGTGTTAA
*
8698021 TTTTTGTCTTATTTA-TTTTGTGTTGA
1 TTTTTGTCTT-TTTATTTTTGTGTTAA
8698047 TTTTT
1 TTTTT
8698052 TAATGATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.11, C:0.04, G:0.09, T:0.77
Consensus pattern (26 bp):
TTTTTGTCTTTTTATTTTTGTGTTAA
Found at i:8698088 original size:16 final size:15
Alignment explanation
Indices: 8698058--8698093 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
8698048 TTTTTAATGA
8698058 TATTATTGTTGTTAT
1 TATTATTGTTGTTAT
*
8698073 TATTATTTTATGTTAT
1 TATTATTGT-TGTTAT
8698089 TATTA
1 TATTA
8698094 ATATTCATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (15 bp):
TATTATTGTTGTTAT
Found at i:8698146 original size:18 final size:20
Alignment explanation
Indices: 8698120--8698164 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
8698110 AAATGAGTAA
*
8698120 AAAACATAGA-AT-TAAAAT
1 AAAATATAGATATGTAAAAT
*
8698138 AAAATATAGATTTGTAAAAT
1 AAAATATAGATATGTAAAAT
8698158 AAAATAT
1 AAAATAT
8698165 GCATAAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 9 0.39
19 1 0.04
20 13 0.57
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (20 bp):
AAAATATAGATATGTAAAAT
Found at i:8698878 original size:52 final size:52
Alignment explanation
Indices: 8698822--8698950 Score: 188
Period size: 52 Copynumber: 2.5 Consensus size: 52
8698812 AGAGTTAGGG
*
8698822 TAATTCTAAAATCAGTTTAATAAAATTTTGAAATTTTGCTAAAGACTGGAGA
1 TAATTCTAAAATCAGTTTAATAAAATTTTGAAATTTTGCTAAAGACTCGAGA
* * **
8698874 TAATTATAAAATCACTTTAATAAAATTTTGGGATTTTGCTAAAGACTCGAGA
1 TAATTCTAAAATCAGTTTAATAAAATTTTGAAATTTTGCTAAAGACTCGAGA
* *
8698926 TAATCCTAAAATCAG-TAAATAAAAT
1 TAATTCTAAAATCAGTTTAATAAAAT
8698951 ATCCTATGAT
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
51 9 0.13
52 59 0.87
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (52 bp):
TAATTCTAAAATCAGTTTAATAAAATTTTGAAATTTTGCTAAAGACTCGAGA
Found at i:8701981 original size:22 final size:22
Alignment explanation
Indices: 8701950--8702029 Score: 90
Period size: 22 Copynumber: 3.7 Consensus size: 22
8701940 TGCCTGGAGA
8701950 TCTTAAAAATTATGCTCGAAGG
1 TCTTAAAAATTATGCTCGAAGG
* * * *
8701972 TTTTACAAATTATGCTTGGAGG
1 TCTTAAAAATTATGCTCGAAGG
* * *
8701994 TCTTAAAAATTATACCCGAAAG
1 TCTTAAAAATTATGCTCGAAGG
8702016 -CTTAAAAATTATGC
1 TCTTAAAAATTATGC
8702030 CTAGAGATCA
Statistics
Matches: 46, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 13 0.28
22 33 0.72
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34
Consensus pattern (22 bp):
TCTTAAAAATTATGCTCGAAGG
Found at i:8701985 original size:44 final size:43
Alignment explanation
Indices: 8701937--8702137 Score: 145
Period size: 44 Copynumber: 4.6 Consensus size: 43
8701927 TTTTGTGAGC
* * * *
8701937 TTATGCCTGGAGATCTTAAAAATTATGCTCGAAGGTTTTACAAA
1 TTATGCCTGGAGATCTTAAAAATTATGCCCGAAAG-CTTAAAAA
* * *
8701981 TTATGCTTGGAGGTCTTAAAAATTATACCCGAAAGCTTAAAAA
1 TTATGCCTGGAGATCTTAAAAATTATGCCCGAAAGCTTAAAAA
* * * * *
8702024 TTATGCCTAGAGATCATACAAATCATGCCCGAAAGTCTTAAGAA
1 TTATGCCTGGAGATCTTAAAAATTATGCCCGAAAG-CTTAAAAA
** * * * *
8702068 TTAAACCTGGA-AGTCTTGAGAATTACGCCC-AGAAGCCTTACAAA
1 TTATGCCTGGAGA-TCTTAAAAATTATGCCCGA-AAG-CTTAAAAA
* * * *
8702112 TTATACCTAGAGGTCTTATAAATTAT
1 TTATGCCTGGAGATCTTAAAAATTAT
8702138 TTCTTATATT
Statistics
Matches: 119, Mismatches: 34, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
43 36 0.30
44 83 0.70
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (43 bp):
TTATGCCTGGAGATCTTAAAAATTATGCCCGAAAGCTTAAAAA
Found at i:8706910 original size:8 final size:7
Alignment explanation
Indices: 8706885--8706991 Score: 53
Period size: 8 Copynumber: 14.9 Consensus size: 7
8706875 NNNNNNNNAT
8706885 TATATTA
1 TATATTA
8706892 TATATTAA
1 TATATT-A
8706900 TATATGTA
1 TATAT-TA
*
8706908 TATCTTTA
1 TAT-ATTA
*
8706916 TTTATTA
1 TATATTA
* *
8706923 TTTATTT
1 TATATTA
*
8706930 TCTATTA
1 TATATTA
8706937 -ATATT-
1 TATATTA
8706942 TATATGTA
1 TATAT-TA
*
8706950 TTGTATTTA
1 -TATA-TTA
8706959 TATAGTTA
1 TATA-TTA
8706967 TATA-TA
1 TATATTA
8706973 T-TATTA
1 TATATTA
8706979 TATTATTA
1 TA-TATTA
8706987 T-TATT
1 TATATT
8706992 TTATTATTAA
Statistics
Matches: 79, Mismatches: 10, Indels: 23
0.71 0.09 0.21
Matches are distributed among these distances:
5 2 0.03
6 18 0.23
7 21 0.27
8 30 0.38
9 7 0.09
10 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.61
Consensus pattern (7 bp):
TATATTA
Found at i:8707007 original size:14 final size:14
Alignment explanation
Indices: 8706971--8707000 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8706961 TAGTTATATA
*
8706971 TATTATTATATTAT
1 TATTATTTTATTAT
8706985 TATTATTTTATTAT
1 TATTATTTTATTAT
8706999 TA
1 TA
8707001 ATTTTTTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTATTTTATTAT
Found at i:8707423 original size:25 final size:25
Alignment explanation
Indices: 8707389--8707442 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
8707379 TTGGGAGTGA
*
8707389 GAAAAATTTTT-TAGAAATTTTTGG
1 GAAAAATTTTTCTAGAAATTTCTGG
*
8707413 CGAAAAATTTTTCTGGAAATTTCTGG
1 -GAAAAATTTTTCTAGAAATTTCTGG
8707439 GAAA
1 GAAA
8707443 TTTTCAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.39
Consensus pattern (25 bp):
GAAAAATTTTTCTAGAAATTTCTGG
Found at i:8707974 original size:5 final size:5
Alignment explanation
Indices: 8707957--8708029 Score: 55
Period size: 5 Copynumber: 14.4 Consensus size: 5
8707947 TTAATATTCT
*
8707957 TTTTA TCTTTA TTTTA TTTTTA TTTT- GTTT- TTTTA TTTT- TATTTA
1 TTTTA T-TTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA
*
8708002 TTTTCA CTTTCA TTTT- TTTTA TTTTA TT
1 TTTT-A -TTTTA TTTTA TTTTA TTTTA TT
8708030 ATTCTATTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
4 11 0.20
5 29 0.52
6 13 0.23
7 3 0.05
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:8707977 original size:6 final size:6
Alignment explanation
Indices: 8707956--8708000 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
8707946 TTTAATATTC
* *
8707956 TTTTTA TCTTTA -TTTTA TTTTTA TTTTGTT TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT-TA TTTTTA TTTTTA TTT
8708001 ATTTTCACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 4 0.12
6 24 0.73
7 5 0.15
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:8708018 original size:30 final size:30
Alignment explanation
Indices: 8707956--8708040 Score: 84
Period size: 30 Copynumber: 2.7 Consensus size: 30
8707946 TTTAATATTC
* *
8707956 TTTTTATCTTTATTTTATTTTTATTT--TGTT
1 TTTTTATTTTTA-TTTATTTTCATTTCAT-TT
8707986 TTTTTATTTTTATTTATTTTCACTTTCATTT
1 TTTTTATTTTTATTTATTTTCA-TTTCATTT
8708017 TTTTTATTTTATTATTCTATTTTC
1 TTTTTA-TTT-TTATT-TATTTTC
8708041 TTTAAATAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
29 9 0.19
30 14 0.30
31 8 0.17
32 4 0.09
33 5 0.11
34 7 0.15
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (30 bp):
TTTTTATTTTTATTTATTTTCATTTCATTT
Found at i:8708149 original size:63 final size:59
Alignment explanation
Indices: 8708056--8708353 Score: 341
Period size: 63 Copynumber: 4.9 Consensus size: 59
8708046 ATAAAAATCA
8708056 AAATTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
1 AAATTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAAT
8708116 AAATTTTCAAAAAAAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAAT
1 AAATTTTC---AAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAA-AAT
* * *
8708179 AAATTTTC--CAAAAAGTAATTTTAGGGAAAAGTTGAAAGTATCCAATTTTCCTTAAAAT
1 AAATTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTAT-CAATTTTCCTTAAAAT
* *
8708237 AAATTTTTCCAAAAAAAAATATTTTTAGGGAAAAGTTTGAAAGTATCAATTTTTTCTAAAAAT
1 AAA-TTTT-CAAAAAAAAATATTTTTAGGGAAAAG-TTGAAAGTATCAA-TTTTCCTTAAAAT
* * * * ** * *
8708300 AAATTTCCCATAAAAATTATTTTCCGAGATTAAGTTGAAAGTATCTAATTTTCC
1 AAATTTTCAAAAAAAAATATTTTTAGGGA-AAAGTTGAAAGTATC-AATTTTCC
8708354 CTACACAAAA
Statistics
Matches: 206, Mismatches: 17, Indels: 29
0.82 0.07 0.12
Matches are distributed among these distances:
58 34 0.17
59 18 0.09
60 9 0.04
61 32 0.16
62 33 0.16
63 80 0.39
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.36
Consensus pattern (59 bp):
AAATTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAT
Found at i:8708209 original size:121 final size:120
Alignment explanation
Indices: 8708067--8708353 Score: 366
Period size: 121 Copynumber: 2.3 Consensus size: 120
8708057 AATTTTCAAA
*
8708067 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTTCAAAAAAA
1 AAAAAATAATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAATAAATTTTTC--AAAAA
* *
8708131 AAAAATATTTTT-GAGGAAAAG-TTGAAAGTATCAATTTTC-CTTAAGAATAAATTTTCC
63 AAAAATATTTTTAG-GGAAAAGTTTGAAAGTATCAATTTTCTC-TAAAAATAAATTTCCC
* *
8708188 AAAAAGTAATTTTAGGGAAAAGTTGAAAGTATCCAATTTTCCTTAAAATAAATTTTTCCAAAAAA
1 AAAAAATAATTTTAGGGAAAAGTTGAAAGTAT-CAATTTTCCTTAAAATAAATTTTTCAAAAAAA
*
8708253 AAATATTTTTAGGGAAAAGTTTGAAAGTATCAATTTTTTCTAAAAATAAATTTCCC
65 AAATATTTTTAGGGAAAAGTTTGAAAGTATCAATTTTCTCTAAAAATAAATTTCCC
* * * *
8708309 ATAAAAATTATTTTCCGAGATTAAGTTGAAAGTATCTAATTTTCC
1 A-AAAAATAATTTT-AGGGA-AAAGTTGAAAGTATC-AATTTTCC
8708354 CTACACAAAA
Statistics
Matches: 146, Mismatches: 11, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
120 23 0.16
121 70 0.48
122 28 0.19
123 4 0.03
124 21 0.14
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.36
Consensus pattern (120 bp):
AAAAAATAATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTTTCAAAAAAAA
AATATTTTTAGGGAAAAGTTTGAAAGTATCAATTTTCTCTAAAAATAAATTTCCC
Found at i:8709975 original size:18 final size:19
Alignment explanation
Indices: 8709947--8709984 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
8709937 GCATTTTCAT
8709947 CTTTTTCTTTTCT-TTTTTC
1 CTTTTTCTTTT-TATTTTTC
8709966 CTTTTT-TTTTTATTTTTC
1 CTTTTTCTTTTTATTTTTC
8709984 C
1 C
8709985 ATATTTAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.06
18 11 0.61
19 6 0.33
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (19 bp):
CTTTTTCTTTTTATTTTTC
Found at i:8712886 original size:61 final size:61
Alignment explanation
Indices: 8712804--8712942 Score: 181
Period size: 61 Copynumber: 2.3 Consensus size: 61
8712794 CATAATAATT
* * *
8712804 TAATGATGTATAGATTG-ACAAAGGATTGCATGAATGGATGCATAAGTTAATATTTGCCCTA
1 TAATGATGTAT-GAATGAACAAAGGACTGCATGAATGGATACATAAGTTAATATTTGCCCTA
* * * * * *
8712865 TAATGATGCATGAATGAACAAATGACTGTATGAATGGATACATGAGTTAATGTTTGCCTTA
1 TAATGATGTATGAATGAACAAAGGACTGCATGAATGGATACATAAGTTAATATTTGCCCTA
8712926 TAATGATGTATGAATGA
1 TAATGATGTATGAATGA
8712943 TGAATGCACA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
60 4 0.06
61 63 0.94
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.33
Consensus pattern (61 bp):
TAATGATGTATGAATGAACAAAGGACTGCATGAATGGATACATAAGTTAATATTTGCCCTA
Found at i:8722683 original size:74 final size:74
Alignment explanation
Indices: 8722594--8722739 Score: 220
Period size: 74 Copynumber: 2.0 Consensus size: 74
8722584 AGTTTAATTC
* * * *
8722594 AGCTAAATGCACTTTTAGCACAACCTCAAGAAAATTATTGGGATTTATCATCAGTAAAAAAGAAA
1 AGCTAAATGCACTTTTAGCACAACCTCAAAAAAATTACTAGAATTTATCATCAGTAAAAAAGAAA
*
8722659 TTGAGGTTT
66 TTAAGGTTT
* * *
8722668 AGCTAAATGCACTTTTGGCACAACCTTAAAAAAATTACTAGAATTTATCATCAGTAAAAAATAAA
1 AGCTAAATGCACTTTTAGCACAACCTCAAAAAAATTACTAGAATTTATCATCAGTAAAAAAGAAA
8722733 TTAAGGT
66 TTAAGGT
8722740 GGATCCATAT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
74 64 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (74 bp):
AGCTAAATGCACTTTTAGCACAACCTCAAAAAAATTACTAGAATTTATCATCAGTAAAAAAGAAA
TTAAGGTTT
Found at i:8725771 original size:22 final size:21
Alignment explanation
Indices: 8725728--8725801 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
8725718 AAGTTCACAC
8725728 AAAAATAAAATAAAAATCATA
1 AAAAATAAAATAAAAATCATA
** *
8725749 AAAAATAAATATATGAATTAT-
1 AAAAATAAA-ATAAAAATCATA
* *
8725770 AAAAAT-ATATAAAAATGAGTA
1 AAAAATAAAATAAAAATCA-TA
8725791 AAAAATTAAAA
1 AAAAA-TAAAA
8725802 AAATTAAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
19 7 0.17
20 2 0.05
21 20 0.50
22 9 0.22
23 2 0.05
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (21 bp):
AAAAATAAAATAAAAATCATA
Found at i:8725782 original size:10 final size:9
Alignment explanation
Indices: 8725764--8725823 Score: 57
Period size: 9 Copynumber: 6.2 Consensus size: 9
8725754 TAAATATATG
8725764 AATTATAAA
1 AATTATAAA
8725773 AATATATAAA
1 AAT-TATAAA
*
8725783 AATGAGTAAAA
1 AATTA-T-AAA
*
8725794 AATTAAAAA
1 AATTATAAA
*
8725803 AATTAAAAA
1 AATTATAAA
8725812 AATTATGAAA
1 AATTAT-AAA
8725822 AA
1 AA
8725824 AAATCGAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 21 0.49
10 15 0.35
11 7 0.16
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (9 bp):
AATTATAAA
Found at i:8727679 original size:24 final size:25
Alignment explanation
Indices: 8727637--8727691 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 25
8727627 AAATTAAAAT
*
8727637 TAAAATAAATAAAAAATAAATATGA
1 TAAAATAAATAAAAAATAAATAAGA
*
8727662 TAAAATAAA-AAAAGATAAATAAGA
1 TAAAATAAATAAAAAATAAATAAGA
8727686 TAAAAT
1 TAAAAT
8727692 TTTTACAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 19 0.68
25 9 0.32
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (25 bp):
TAAAATAAATAAAAAATAAATAAGA
Found at i:8728079 original size:16 final size:16
Alignment explanation
Indices: 8728058--8728119 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 16
8728048 TAAGGTTCAA
*
8728058 AGATTTCCAAGAATTC
1 AGATTTGCAAGAATTC
8728074 AGATTTGCAAGAATT-
1 AGATTTGCAAGAATTC
* *
8728089 TGATTTTCAAGAATTTC
1 AGATTTGCAAGAA-TTC
*
8728106 AGGTTTGCAAGAAT
1 AGATTTGCAAGAAT
8728120 ATTAAGAATC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
15 11 0.29
16 17 0.45
17 10 0.26
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.35
Consensus pattern (16 bp):
AGATTTGCAAGAATTC
Found at i:8728099 original size:15 final size:15
Alignment explanation
Indices: 8728059--8728104 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
8728049 AAGGTTCAAA
*
8728059 GATTTCCAAGAATTCA
1 GATTTCCAAGAATT-T
*
8728075 GATTTGCAAGAATTT
1 GATTTCCAAGAATTT
*
8728090 GATTTTCAAGAATTT
1 GATTTCCAAGAATTT
8728105 CAGGTTTGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (15 bp):
GATTTCCAAGAATTT
Found at i:8728113 original size:32 final size:31
Alignment explanation
Indices: 8728059--8728119 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
8728049 AAGGTTCAAA
8728059 GATTTCCAAGAATTCAGATTTGCAAGAATTT
1 GATTTCCAAGAATTCAGATTTGCAAGAATTT
* *
8728090 GATTTTCAAGAATTTCAGGTTTGCAAGAAT
1 GATTTCCAAGAA-TTCAGATTTGCAAGAAT
8728120 ATTAAGAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.36
Consensus pattern (31 bp):
GATTTCCAAGAATTCAGATTTGCAAGAATTT
Found at i:8728187 original size:18 final size:17
Alignment explanation
Indices: 8728160--8728210 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
8728150 AAAATTACAG
* *
8728160 GTTCGCAAGATTTTTCA
1 GTTCGTAAGATTTTTAA
8728177 GTTTCGTAAGAATTTTTAA
1 G-TTCGTAAG-ATTTTTAA
*
8728196 GTTCATAAGATTTTT
1 GTTCGTAAGATTTTT
8728211 TAGATCGCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 7 0.24
18 14 0.48
19 8 0.28
ACGTcount: A:0.27, C:0.10, G:0.16, T:0.47
Consensus pattern (17 bp):
GTTCGTAAGATTTTTAA
Found at i:8728328 original size:49 final size:50
Alignment explanation
Indices: 8728275--8728386 Score: 129
Period size: 49 Copynumber: 2.2 Consensus size: 50
8728265 GTAATACCTT
*
8728275 AGATTCATAAGGC-TCAAAGATTCACAAGAACTCAAATTC-AAGAATTTTC
1 AGATTCATAAGACAT-AAAGATTCACAAGAACTCAAATTCAAAGAATTTTC
* *** * *
8728324 AGATTCTTAAGACATAAAGATTTGTAAGAACTTAGATTCATAAGAATTTTC
1 AGATTCATAAGACATAAAGATTCACAAGAACTCAAATTCA-AAGAATTTTC
8728375 AGATTCATAAGA
1 AGATTCATAAGA
8728387 ATTTTAGTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
49 30 0.58
50 1 0.02
51 21 0.40
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (50 bp):
AGATTCATAAGACATAAAGATTCACAAGAACTCAAATTCAAAGAATTTTC
Found at i:8728343 original size:26 final size:26
Alignment explanation
Indices: 8728314--8728386 Score: 64
Period size: 26 Copynumber: 2.8 Consensus size: 26
8728304 ACTCAAATTC
8728314 AAGAATTTTCAGATTCTTAAGA-CAT
1 AAGAATTTTCAGATTCTTAAGATCAT
* *
8728339 AA-AGATTTGTAAGA-ACTT-AGATTCAT
1 AAGA-ATTT-TCAGATTCTTAAGA-TCAT
*
8728365 AAGAATTTTCAGATTCATAAGA
1 AAGAATTTTCAGATTCTTAAGA
8728387 ATTTTAGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 12
0.68 0.09 0.23
Matches are distributed among these distances:
24 4 0.11
25 13 0.36
26 15 0.42
27 4 0.11
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (26 bp):
AAGAATTTTCAGATTCTTAAGATCAT
Found at i:8728367 original size:16 final size:18
Alignment explanation
Indices: 8728348--8728388 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8728338 TAAAGATTTG
8728348 TAAGAA-CTT-AGATTCA
1 TAAGAATCTTCAGATTCA
*
8728364 TAAGAATTTTCAGATTCA
1 TAAGAATCTTCAGATTCA
8728382 TAAGAAT
1 TAAGAAT
8728389 TTTAGTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.27
17 2 0.09
18 14 0.64
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (18 bp):
TAAGAATCTTCAGATTCA
Found at i:8728380 original size:18 final size:18
Alignment explanation
Indices: 8728357--8728391 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8728347 GTAAGAACTT
8728357 AGATTCATAAGAATTTTC
1 AGATTCATAAGAATTTTC
8728375 AGATTCATAAGAATTTT
1 AGATTCATAAGAATTTT
8728392 AGTTTTGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (18 bp):
AGATTCATAAGAATTTTC
Found at i:8728424 original size:17 final size:17
Alignment explanation
Indices: 8728383--8728425 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
8728373 TCAGATTCAT
* *
8728383 AAGAATTTTAGTTTTGC
1 AAGATTTTTAGATTTGC
*
8728400 AATTATTTTTAGATTTGC
1 AA-GATTTTTAGATTTGC
8728418 AAGATTTT
1 AAGATTTT
8728426 GAAGATTCGT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (17 bp):
AAGATTTTTAGATTTGC
Found at i:8730153 original size:16 final size:16
Alignment explanation
Indices: 8730134--8730201 Score: 95
Period size: 15 Copynumber: 4.3 Consensus size: 16
8730124 CTTTTCTCTC
8730134 TTTTTT-TTTTTCATT
1 TTTTTTATTTTTCATT
*
8730149 TTTTTTCATTTCTCATT
1 TTTTTT-ATTTTTCATT
*
8730166 TTTTTCATTTTTCA-T
1 TTTTTTATTTTTCATT
8730181 TTTTTTATTTTTCATT
1 TTTTTTATTTTTCATT
8730197 TTTTT
1 TTTTT
8730202 ACTTCATCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
15 20 0.43
16 13 0.28
17 13 0.28
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTATTTTTCATT
Found at i:8730171 original size:11 final size:10
Alignment explanation
Indices: 8730137--8730201 Score: 50
Period size: 10 Copynumber: 6.7 Consensus size: 10
8730127 TTCTCTCTTT
8730137 TTTTTTTTCA
1 TTTTTTTTCA
8730147 TTTTTTTTCA
1 TTTTTTTTCA
*
8730157 ---TTTCTCA
1 TTTTTTTTCA
8730164 -TTTTTTTCA
1 TTTTTTTTCA
*
8730173 TTTTTCATTT-T
1 TTTTT--TTTCA
8730184 TTTATTTTTCA
1 TTT-TTTTTCA
8730195 TTTTTTT
1 TTTTTTT
8730202 ACTTCATCCA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
7 6 0.14
9 6 0.14
10 21 0.48
11 6 0.14
12 5 0.11
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:8730191 original size:6 final size:7
Alignment explanation
Indices: 8730150--8730199 Score: 55
Period size: 7 Copynumber: 6.7 Consensus size: 7
8730140 TTTTTCATTT
8730150 TTTTTCA
1 TTTTTCA
*
8730157 TTTCTCA
1 TTTTTCA
8730164 TTTTTTTCA
1 --TTTTTCA
8730173 TTTTTCA
1 TTTTTCA
*
8730180 TTTTTTTA
1 -TTTTTCA
8730188 TTTTTCA
1 TTTTTCA
8730195 TTTTT
1 TTTTT
8730200 TTACTTCATC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
7 24 0.67
8 6 0.17
9 6 0.17
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTCA
Found at i:8730648 original size:17 final size:17
Alignment explanation
Indices: 8730626--8730659 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8730616 TATCTTTGAG
8730626 ACCTTTTGTTATTTTTT
1 ACCTTTTGTTATTTTTT
* *
8730643 ACCTTTTTTTCTTTTTT
1 ACCTTTTGTTATTTTTT
8730660 GAATAAGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.15, G:0.03, T:0.74
Consensus pattern (17 bp):
ACCTTTTGTTATTTTTT
Found at i:8733386 original size:20 final size:18
Alignment explanation
Indices: 8733354--8733406 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
8733344 ATTTGGGATT
*
8733354 CAAT-AAGACTTTTAGGCA
1 CAATGAAGAATTTTA-GCA
8733372 GCAATGAAGAATTTTTAGCA
1 -CAATGAAGAA-TTTTAGCA
8733392 CAAGTGAAGAATTTT
1 CAA-TGAAGAATTTT
8733407 TTGGCCAGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 11 0.37
20 14 0.47
21 5 0.17
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (18 bp):
CAATGAAGAATTTTAGCA
Found at i:8733408 original size:21 final size:21
Alignment explanation
Indices: 8733363--8733407 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
8733353 TCAATAAGAC
8733363 TTTTAGGCAGCAATGAAGAAT
1 TTTTAGGCAGCAATGAAGAAT
8733384 TTTTA-GCA-CAAGTGAAGAAT
1 TTTTAGGCAGCAA-TGAAGAAT
8733404 TTTT
1 TTTT
8733408 TGGCCAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 5 0.22
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.36
Consensus pattern (21 bp):
TTTTAGGCAGCAATGAAGAAT
Found at i:8733616 original size:20 final size:20
Alignment explanation
Indices: 8733570--8733616 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
8733560 TAATAATAAT
8733570 AAATCATAATAAACATGCATA
1 AAAT-ATAATAAACATGCATA
* *
8733591 ATATATAATGAACATG-ATCA
1 AAATATAATAAACATGCAT-A
8733611 AAATAT
1 AAATAT
8733617 CCAAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.09
20 17 0.77
21 3 0.14
ACGTcount: A:0.55, C:0.11, G:0.06, T:0.28
Consensus pattern (20 bp):
AAATATAATAAACATGCATA
Found at i:8734297 original size:18 final size:18
Alignment explanation
Indices: 8734245--8734300 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
8734235 AAAATAGTAA
* *
8734245 TGAGGTTAATGCTAGTGG
1 TGAGGATAATACTAGTGG
* * *
8734263 T-AAGATAATAATGGTGG
1 TGAGGATAATACTAGTGG
*
8734280 TGAGGGTAATACTAGTGG
1 TGAGGATAATACTAGTGG
8734298 TGA
1 TGA
8734301 AGGTTATGAA
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
17 12 0.43
18 16 0.57
ACGTcount: A:0.30, C:0.04, G:0.36, T:0.30
Consensus pattern (18 bp):
TGAGGATAATACTAGTGG
Found at i:8736815 original size:61 final size:61
Alignment explanation
Indices: 8736720--8736842 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
8736710 ATACTATATG
8736720 AAAGATTTGATCCTCTTAATTATTTAAGTTCATGGTTTAGTAGAGAAACTTATTTATGTAT
1 AAAGATTTGATCCTCTTAATTATTTAAGTTCATGGTTTAGTAGAGAAACTTATTTATGTAT
8736781 AAAGATTTGATCCTCTTAATTATTTAAGTTCATGGTTTAGTAGAGAAACTTATTTATGTAT
1 AAAGATTTGATCCTCTTAATTATTTAAGTTCATGGTTTAGTAGAGAAACTTATTTATGTAT
8736842 A
1 A
8736843 TATAAGTACA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (61 bp):
AAAGATTTGATCCTCTTAATTATTTAAGTTCATGGTTTAGTAGAGAAACTTATTTATGTAT
Found at i:8739694 original size:15 final size:16
Alignment explanation
Indices: 8739670--8739702 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8739660 TAGGGATTGA
*
8739670 AAGGGTTTGA-AAAAC
1 AAGGGATTGATAAAAC
8739685 AAGGGATTGATAAAAC
1 AAGGGATTGATAAAAC
8739701 AA
1 AA
8739703 ATATGTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.52, C:0.06, G:0.24, T:0.18
Consensus pattern (16 bp):
AAGGGATTGATAAAAC
Found at i:8739744 original size:17 final size:16
Alignment explanation
Indices: 8739719--8739750 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
8739709 TTTTTTTTCA
8739719 TTTTATTTTATTTTTG
1 TTTTATTTTATTTTTG
8739735 TTTTAGTTTTATTTTT
1 TTTTA-TTTTATTTTT
8739751 TGGTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.81
Consensus pattern (16 bp):
TTTTATTTTATTTTTG
Found at i:8740098 original size:31 final size:31
Alignment explanation
Indices: 8740063--8740127 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
8740053 TTATTTCTCT
8740063 TTTCAACAAATAGCAAATATAAGCTTATTGC
1 TTTCAACAAATAGCAAATATAAGCTTATTGC
* * * *
8740094 TTTCAACATATGGCCAATATAAGCTTTTTGC
1 TTTCAACAAATAGCAAATATAAGCTTATTGC
8740125 TTT
1 TTT
8740128 TCTTTTGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (31 bp):
TTTCAACAAATAGCAAATATAAGCTTATTGC
Found at i:8740661 original size:19 final size:17
Alignment explanation
Indices: 8740636--8740685 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 17
8740626 CTCACTCCTT
8740636 TGTTTTTTTTTTTTCATC
1 TGTTTTTTTTTTTTC-TC
*
8740654 TAGTTTTTTTAATTTTCTC
1 T-GTTTTTTT-TTTTTCTC
8740673 T-TTTTTTTTTTTT
1 TGTTTTTTTTTTTT
8740686 TAAATTGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 4 0.14
17 7 0.25
18 1 0.04
19 11 0.39
20 5 0.18
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.80
Consensus pattern (17 bp):
TGTTTTTTTTTTTTCTC
Found at i:8741819 original size:8 final size:8
Alignment explanation
Indices: 8741806--8741862 Score: 69
Period size: 8 Copynumber: 6.8 Consensus size: 8
8741796 CTCTATAAGC
8741806 TTTTTATT
1 TTTTTATT
8741814 TTTTTATT
1 TTTTTATT
8741822 TATTTTCATT
1 T-TTTT-ATT
8741832 TTTTTATCT
1 TTTTTAT-T
* *
8741841 TTTTAAAT
1 TTTTTATT
8741849 TTTTTATT
1 TTTTTATT
8741857 TTTTTA
1 TTTTTA
8741863 AGTTGGATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
8 24 0.57
9 14 0.33
10 4 0.10
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTATT
Found at i:8741833 original size:17 final size:17
Alignment explanation
Indices: 8741806--8741863 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
8741796 CTCTATAAGC
8741806 TTTTT-ATTTTTTTATT
1 TTTTTAATTTTTTTATT
* *
8741822 TATTTTCATTTTTTTATC
1 T-TTTTAATTTTTTTATT
*
8741840 TTTTTAAATTTTTTATT
1 TTTTTAATTTTTTTATT
8741857 TTTTTAA
1 TTTTTAA
8741864 GTTGGATAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
16 1 0.03
17 24 0.67
18 11 0.31
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTAATTTTTTTATT
Found at i:8742886 original size:2 final size:2
Alignment explanation
Indices: 8742879--8742919 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
8742869 AAGAGAAGGA
* * *
8742879 AT AT AT AT AC AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8742920 ATTGAATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:8746847 original size:13 final size:13
Alignment explanation
Indices: 8746829--8746856 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8746819 TAAAAACTTT
8746829 TTTCCTTTTTTTC
1 TTTCCTTTTTTTC
8746842 TTTCCTTTTTTTC
1 TTTCCTTTTTTTC
8746855 TT
1 TT
8746857 CTTCTCCCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCCTTTTTTTC
Found at i:8748340 original size:14 final size:14
Alignment explanation
Indices: 8748314--8748367 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
8748304 AGATTTATTT
*
8748314 ATTTGTTTAGTTTTA
1 ATTTTTTTA-TTTTA
*
8748329 ATTTTTTTGTTTT-
1 ATTTTTTTATTTTA
*
8748342 -TTTTTTTATTTGA
1 ATTTTTTTATTTTA
8748355 ATTTTTTTATTTT
1 ATTTTTTTATTTT
8748368 TTTTATAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
12 10 0.31
14 15 0.47
15 7 0.22
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (14 bp):
ATTTTTTTATTTTA
Found at i:8748357 original size:26 final size:27
Alignment explanation
Indices: 8748307--8748371 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 27
8748297 AACTCGAAGA
* * *
8748307 TTTATTTATTTGTTTAGTTTTAATTTT
1 TTTATTTTTTTTTTTAGTTTGAATTTT
*
8748334 TTTGTTTTTTTTTTTA-TTTGAATTTT
1 TTTATTTTTTTTTTTAGTTTGAATTTT
8748360 TTTATTTTTTTT
1 TTTATTTTTTTT
8748372 ATAATTTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.80
Consensus pattern (27 bp):
TTTATTTTTTTTTTTAGTTTGAATTTT
Found at i:8748378 original size:26 final size:26
Alignment explanation
Indices: 8748328--8748378 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
8748318 GTTTAGTTTT
* * *
8748328 AATTTTTTTGTTTTTTTTTTTATTTG
1 AATTTTTTTATTTTTTTTATAATTTG
8748354 AATTTTTTTATTTTTTTTATAATTT
1 AATTTTTTTATTTTTTTTATAATTT
8748379 TAATAACTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (26 bp):
AATTTTTTTATTTTTTTTATAATTTG
Found at i:8748615 original size:50 final size:50
Alignment explanation
Indices: 8748527--8748707 Score: 186
Period size: 50 Copynumber: 3.6 Consensus size: 50
8748517 GTTTTGTTTG
* * *
8748527 AACAAATGCTCAACAACTTTTTAAAAAATCTTATCTTGAAAAATGCTATTCTA
1 AACAAAGGCTCAACAA--TTTT-AAAAATCTCATCTTGAAAAAAGCTATTCTA
*
8748580 AACAAATGG-TCAACAATTTTAAAAATCTCATCTTGAAAAAAGTTATTCTA
1 AACAAA-GGCTCAACAATTTTAAAAATCTCATCTTGAAAAAAGCTATTCTA
* * * * * * *
8748630 AATAAAGGCTTAAAAATTTTTAAAATCTCATTTTCAAAAAAACTCATT-TA
1 AACAAAGGCTCAACAATTTTAAAAATCTCATCTTGAAAAAAGCT-ATTCTA
* *
8748680 GACAAAGGCTCAATAATTTTAAAAATCT
1 AACAAAGGCTCAACAATTTTAAAAATCT
8748708 TAAGAAAAAG
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
49 2 0.02
50 85 0.79
51 7 0.06
53 13 0.12
54 1 0.01
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.33
Consensus pattern (50 bp):
AACAAAGGCTCAACAATTTTAAAAATCTCATCTTGAAAAAAGCTATTCTA
Found at i:8750001 original size:2 final size:2
Alignment explanation
Indices: 8749996--8750033 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8749986 ATTCAATCTT
8749996 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8750034 AACCAACTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8750389 original size:13 final size:13
Alignment explanation
Indices: 8750366--8750390 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8750356 TTTTTTACAT
8750366 ATTTTATTTATTC
1 ATTTTATTTATTC
8750379 ATTTTATTTATT
1 ATTTTATTTATT
8750391 TTGATTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTTATTTATTC
Found at i:8750935 original size:20 final size:21
Alignment explanation
Indices: 8750912--8750952 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8750902 TGTTATAGTT
* *
8750912 TTGTC-TTTTTTTTATTTTCA
1 TTGTCATTTTTATTAATTTCA
8750932 TTGTCATTTTTATTAATTTCA
1 TTGTCATTTTTATTAATTTCA
8750953 CTTCTTTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.68
Consensus pattern (21 bp):
TTGTCATTTTTATTAATTTCA
Found at i:8751253 original size:22 final size:20
Alignment explanation
Indices: 8751228--8751287 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
8751218 GACGTATGCA
8751228 TTTATTATATATGTATTTACTT
1 TTTATTATATAT-TATTTA-TT
* *
8751250 TTTATTTTATTTTATTTATT
1 TTTATTATATATTATTTATT
*
8751270 TTT-TTATAAATTATTTAT
1 TTTATTATATATTATTTAT
8751288 CCCTTTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
19 12 0.36
20 5 0.15
21 6 0.18
22 10 0.30
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTATTATATATTATTTATT
Found at i:8755323 original size:10 final size:11
Alignment explanation
Indices: 8755303--8755327 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8755293 CACCATGGAA
8755303 TTTGTTTTTTT
1 TTTGTTTTTTT
8755314 TTTGTTTTTTT
1 TTTGTTTTTTT
8755325 TTT
1 TTT
8755328 ATGTCTGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTGTTTTTTT
Found at i:8755824 original size:12 final size:11
Alignment explanation
Indices: 8755787--8755821 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
8755777 TTTTTTTTTC
8755787 ATTTTTAATTA
1 ATTTTTAATTA
8755798 ATTATTTAATTA
1 ATT-TTTAATTA
*
8755810 ATTTTGAATTA
1 ATTTTTAATTA
8755821 A
1 A
8755822 ATTAACTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (11 bp):
ATTTTTAATTA
Found at i:8756211 original size:13 final size:13
Alignment explanation
Indices: 8756195--8756219 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8756185 ATATCAAAAT
8756195 TAATAAAAATAAG
1 TAATAAAAATAAG
8756208 TAATAAAAATAA
1 TAATAAAAATAA
8756220 TTTTAATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
TAATAAAAATAAG
Found at i:8757772 original size:31 final size:31
Alignment explanation
Indices: 8757737--8757803 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
8757727 TGACTTTCCA
8757737 GTTTTGTAAATAGCTTTGAATATGAAATCTT
1 GTTTTGTAAATAGCTTTGAATATGAAATCTT
* *
8757768 GTTTTGTAAATAGTTTTGAATATGAATTCTT
1 GTTTTGTAAATAGCTTTGAATATGAAATCTT
8757799 GTTTT
1 GTTTT
8757804 TACTATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.51
Consensus pattern (31 bp):
GTTTTGTAAATAGCTTTGAATATGAAATCTT
Found at i:8758071 original size:139 final size:142
Alignment explanation
Indices: 8757813--8758144 Score: 363
Period size: 139 Copynumber: 2.3 Consensus size: 142
8757803 TTACTATTTA
* * * *
8757813 AATATGAATTCTTGTTTTTACTATGCTTTACACACATGTATTTGCATAT-GTATTTTTATCTATA
1 AATATGAATTCTTGTTTTTACTATG-TTTGCATACATGTATTTGCATATAATATTTTTATCCATA
* *
8757877 TAAACATCTTTGTATGTACATTATTTTATTTCTTTGGGAGAATCTTTGCCCTTTTT-AGTTTT-G
65 TAAACATCTTTGTATGCACATTATTTCATTTCTTTGGGAGAATCTTTGCCCTTTTTCAGTTTTGG
* *
8757940 TAC-ATAGTTTTG
130 TACGAAAGTTTCG
* * * *
8757952 AATATAAATTCTTGTTTTTACTATGTATTGCATATATCTATTTGCATATACATTTTTTTATCCAT
1 AATATGAATTCTTGTTTTTACTATGT-TTGCATACATGTATTTGCATATA-ATATTTTTATCCAT
* * * ****
8758017 GTAAACAT-TTTGTGTGCACATTATTTCATTTGTTTGGG-GTAAT-TTTTTTTTTTTTCAGTTTT
64 ATAAACATCTTTGTATGCACATTATTTCATTTCTTTGGGAG-AATCTTTGCCCTTTTTCAGTTTT
8758079 GGTACGAAAGTTTCG
128 GGTACGAAAGTTTCG
* * *
8758094 AATATGAATTCTTGTTTTTCATTATGTTTTGAATACATGTATTTGTATATA
1 AATATGAATTCTTGTTTTT-ACTATG-TTTGCATACATGTATTTGCATATA
8758145 TTTTTGTGTG
Statistics
Matches: 159, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
138 1 0.01
139 51 0.32
140 35 0.22
141 22 0.14
142 25 0.16
143 24 0.15
144 1 0.01
ACGTcount: A:0.25, C:0.11, G:0.13, T:0.52
Consensus pattern (142 bp):
AATATGAATTCTTGTTTTTACTATGTTTGCATACATGTATTTGCATATAATATTTTTATCCATAT
AAACATCTTTGTATGCACATTATTTCATTTCTTTGGGAGAATCTTTGCCCTTTTTCAGTTTTGGT
ACGAAAGTTTCG
Found at i:8761489 original size:14 final size:15
Alignment explanation
Indices: 8761455--8761498 Score: 63
Period size: 14 Copynumber: 2.9 Consensus size: 15
8761445 TGAAGATGAT
*
8761455 AAAATGATAAAATATA
1 AAAAAGATAAAA-ATA
8761471 AAAAAGATAAAAA-A
1 AAAAAGATAAAAATA
8761485 AAAAAGATAAAAAT
1 AAAAAGATAAAAAT
8761499 GTATGTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 14 0.54
15 1 0.04
16 11 0.42
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (15 bp):
AAAAAGATAAAAATA
Found at i:8762694 original size:71 final size:70
Alignment explanation
Indices: 8762619--8762756 Score: 204
Period size: 71 Copynumber: 2.0 Consensus size: 70
8762609 AATTGCATAA
* *
8762619 TTGTTTAGACTATGCATTTACATCATTTGGTGAGAATTTAAATCATTGTTTTGAATATTGCATTT
1 TTGTTTACACTATGCATTTACATCATTTGGTGAGAATCTAAATCATTG-TTTGAATATTGCATTT
8762684 GCACAT
65 GCACAT
** * **
8762690 TTGTTTACACTATGCATTTGTATCATTTGTTGAGTGTCTAAATCATTGTTTGAATATTGCATTTG
1 TTGTTTACACTATGCATTTACATCATTTGGTGAGAATCTAAATCATTGTTTGAATATTGCATTTG
8762755 CA
66 CA
8762757 TCACAGATAG
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
70 19 0.32
71 41 0.68
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (70 bp):
TTGTTTACACTATGCATTTACATCATTTGGTGAGAATCTAAATCATTGTTTGAATATTGCATTTG
CACAT
Found at i:8762759 original size:25 final size:25
Alignment explanation
Indices: 8762731--8762786 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
8762721 GAGTGTCTAA
* * * *
8762731 ATCATTGTTTGAATATTGCATTTGC
1 ATCATTGATAGAATAGTACATTTGC
**
8762756 ATCACAGATAGAATAGTACATTTGC
1 ATCATTGATAGAATAGTACATTTGC
8762781 ATCATT
1 ATCATT
8762787 TGGTGAGCAT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (25 bp):
ATCATTGATAGAATAGTACATTTGC
Found at i:8763517 original size:42 final size:42
Alignment explanation
Indices: 8763443--8763679 Score: 135
Period size: 42 Copynumber: 5.5 Consensus size: 42
8763433 TCTTTCATTT
*
8763443 TTTTAAGAGTTTCATTG-CTTCTAGTTAGAGAAGCTTTTTAAAA
1 TTTTAA-AGTTTCAATGCCTT-TAGTTAGAGAAGCTTTTTAAAA
* * * *
8763486 TTTTAAAGTTTCAATGCCTTTGGTTAAAGAAGTTTTTTGGTTGTAAAT
1 TTTTAAAGTTTCAATGCCTTTAGTTAGAGAAG---CTT--TT-TAAAA
* * * * * * **
8763534 TTTTAAAATTTC-ATAGCCTATGGTTAGAGAAACTCTTTCATT
1 TTTTAAAGTTTCAAT-GCCTTTAGTTAGAGAAGCTTTTTAAAA
* * * *
8763576 TTTTAAAAGTTTCATTACCTTTAGTTAGAGGAGCCTTTTAAAA
1 TTTT-AAAGTTTCAATGCCTTTAGTTAGAGAAGCTTTTTAAAA
* *
8763619 TTTTAAAGTTGCAATGCTTCTTA-TTAGA-AGAG-TCTTTT-AAA
1 TTTTAAAGTTTCAATGCCT-TTAGTTAGAGA-AGCT-TTTTAAAA
8763660 TTCTTAAAGTTTCAATGCCT
1 TT-TTAAAGTTTCAATGCCT
8763680 CTATTGATGA
Statistics
Matches: 147, Mismatches: 33, Indels: 29
0.70 0.16 0.14
Matches are distributed among these distances:
41 5 0.03
42 63 0.43
43 42 0.29
44 1 0.01
45 3 0.02
47 4 0.03
48 29 0.20
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (42 bp):
TTTTAAAGTTTCAATGCCTTTAGTTAGAGAAGCTTTTTAAAA
Found at i:8763591 original size:133 final size:133
Alignment explanation
Indices: 8763353--8763635 Score: 365
Period size: 133 Copynumber: 2.1 Consensus size: 133
8763343 TTGATTTTTC
* *
8763353 TTTTAAAGTTTCAAAGCCTTTCGTTAAATGAGTTTCTTGATTGCAAATTTTAAAGTTTCATAGCC
1 TTTTAAAGTTTCAATGCCTTTCGTTAAATGAGTTTCTTGATTGCAAATTTTAAAATTTCATAGCC
* * * * *
8763418 TCTACTTAAACAAGCTCTTTCATTTTTTTAAGAGTTTCATT-GCTTCTAGTTAGAGAAGCTTTTT
66 TATACTTAAACAAACTCTTTCATTTTTTTAAAAGTTTCATTACCTT-TAGTTAGAGAAGCCTTTT
8763482 AAAA
130 AAAA
* * * *
8763486 TTTTAAAGTTTCAATGCCTTTGGTTAAA-GAAGTTTTTTGGTTGTAAATTTTTAAAATTTCATAG
1 TTTTAAAGTTTCAATGCCTTTCGTTAAATG-AGTTTCTTGATTGCAAA-TTTTAAAATTTCATAG
** * * *
8763550 CCTATGGTTAGAGAAACTCTTTCA-TTTTTTAAAAGTTTCATTACCTTTAGTTAGAGGAGCCTTT
64 CCTATACTTAAACAAACTCTTTCATTTTTTTAAAAGTTTCATTACCTTTAGTTAGAGAAGCCTTT
8763614 TAAAA
129 TAAAA
*
8763619 TTTTAAAGTTGCAATGC
1 TTTTAAAGTTTCAATGC
8763636 TTCTTATTAG
Statistics
Matches: 130, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
132 1 0.01
133 93 0.72
134 36 0.28
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (133 bp):
TTTTAAAGTTTCAATGCCTTTCGTTAAATGAGTTTCTTGATTGCAAATTTTAAAATTTCATAGCC
TATACTTAAACAAACTCTTTCATTTTTTTAAAAGTTTCATTACCTTTAGTTAGAGAAGCCTTTTA
AAA
Found at i:8763698 original size:42 final size:42
Alignment explanation
Indices: 8763610--8763698 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
8763600 TTAGAGGAGC
* *
8763610 CTTTTAAAATTTTAAAGTTGCAATGCTTCTTATTAGAAGAGT
1 CTTTTAAAATTTTAAAGTTGCAATGCCTCTTATTAGAAAAGT
*
8763652 CTTTT-AAATTCTTAAAGTTTCAATGCCTC-TATTGATGAAAAG-
1 CTTTTAAAATT-TTAAAGTTGCAATGCCTCTTATT-A-GAAAAGT
8763694 CTTTT
1 CTTTT
8763699 TGATTTTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
41 9 0.22
42 27 0.66
43 5 0.12
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.44
Consensus pattern (42 bp):
CTTTTAAAATTTTAAAGTTGCAATGCCTCTTATTAGAAAAGT
Found at i:8763888 original size:49 final size:49
Alignment explanation
Indices: 8763787--8763888 Score: 109
Period size: 49 Copynumber: 2.1 Consensus size: 49
8763777 AGGGGGAGCT
** *** * *
8763787 TTTTGAATTTTTAAAGTTTCAACGTCTCTGTTGATGGAAAGTTTTCATA
1 TTTTGAATTCCTAAAGTTTCAAAAACTCTGTTGATGGAAACTTTTCAAA
8763836 TTTTGAATTCCTAAAGTTTCAAAAACTCTGTTGA-GGAGGAACTTTT-AAA
1 TTTTGAATTCCTAAAGTTTCAAAAACTCTGTTGATGGA--AACTTTTCAAA
8763885 TTTT
1 TTTT
8763889 TCAAAGTTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
48 3 0.07
49 35 0.80
50 6 0.14
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (49 bp):
TTTTGAATTCCTAAAGTTTCAAAAACTCTGTTGATGGAAACTTTTCAAA
Found at i:8767465 original size:25 final size:24
Alignment explanation
Indices: 8767436--8767501 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 24
8767426 TTAATATAAC
*
8767436 TATTACAATATTAAAATTTATTTAT
1 TATTAAAATATTAAAA-TTATTTAT
*
8767461 TATTAAAATATATTGAAATTATTTAT
1 TATT-AAA-ATATTAAAATTATTTAT
8767487 TATTAAAATTATTAA
1 TATTAAAA-TATTAA
8767502 TATTCAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
24 1 0.03
25 12 0.34
26 14 0.40
27 8 0.23
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (24 bp):
TATTAAAATATTAAAATTATTTAT
Found at i:8767488 original size:26 final size:27
Alignment explanation
Indices: 8767443--8767501 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 27
8767433 AACTATTACA
8767443 ATATTAAAATTTATTTATTATTAAAAT
1 ATATTAAAATTTATTTATTATTAAAAT
*
8767470 ATATTGAAA-TTATTTATTATTAAAAT
1 ATATTAAAATTTATTTATTATTAAAAT
8767496 -TATTAA
1 ATATTAA
8767502 TATTCAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 5 0.17
26 17 0.57
27 8 0.27
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
ATATTAAAATTTATTTATTATTAAAAT
Found at i:8767510 original size:16 final size:15
Alignment explanation
Indices: 8767470--8767550 Score: 56
Period size: 16 Copynumber: 5.0 Consensus size: 15
8767460 TTATTAAAAT
*
8767470 ATATTGAAATTATTTA
1 ATATTAAAATTA-TTA
*
8767486 TTATTAAAATTATTA
1 ATATTAAAATTATTA
*
8767501 ATATTCAAAAATATTA
1 ATATT-AAAATTATTA
*
8767517 TATTTTAATAATACTATTTA
1 -ATATTAA-AAT--TA-TTA
8767537 ATATTAAAA-TATTA
1 ATATTAAAATTATTA
8767551 TGTTAATATA
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
14 3 0.06
15 9 0.17
16 21 0.40
17 6 0.12
18 2 0.04
19 8 0.15
20 3 0.06
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (15 bp):
ATATTAAAATTATTA
Found at i:8767543 original size:19 final size:19
Alignment explanation
Indices: 8767521--8767563 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
8767511 ATATTATATT
8767521 TTAATAATACTAT-TTAATA
1 TTAA-AATACTATGTTAATA
*
8767540 TTAAAATATTATGTTAATA
1 TTAAAATACTATGTTAATA
8767559 -TAAAA
1 TTAAAA
8767564 AATATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
TTAAAATACTATGTTAATA
Found at i:8767613 original size:15 final size:15
Alignment explanation
Indices: 8767595--8767722 Score: 77
Period size: 18 Copynumber: 8.2 Consensus size: 15
8767585 TATTATTTTT
8767595 TATATTATTTATTAA
1 TATATTATTTATTAA
* *
8767610 TATATTA-ATA-TAT
1 TATATTATTTATTAA
*
8767623 TAT-TTA-TTAATAA
1 TATATTATTTATTAA
*
8767636 TATATTATTTATTCGTA
1 TATATTATTTATT--AA
8767653 TAATATTATTTATTAA
1 T-ATATTATTTATTAA
*
8767669 TATATT-GTTATATAA
1 TATATTATTTAT-TAA
*
8767684 TATTATTTATTTGTATAA
1 TA-TA-TTATTTAT-TAA
8767702 TATTATTTATTTATATAA
1 TA-TA-TTATTTAT-TAA
8767720 TAT
1 TAT
8767723 TATTTATAAG
Statistics
Matches: 92, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
12 5 0.05
13 10 0.11
14 9 0.10
15 21 0.23
16 4 0.04
17 5 0.05
18 38 0.41
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (15 bp):
TATATTATTTATTAA
Found at i:8767638 original size:18 final size:18
Alignment explanation
Indices: 8767585--8767670 Score: 79
Period size: 18 Copynumber: 4.8 Consensus size: 18
8767575 TAAAACTATT
* *
8767585 TATTATTT-TTTATATTA
1 TATTATTTATTAATAATA
* *
8767602 T-TTATTAATATATTAATA
1 TATTATTTAT-TAATAATA
8767620 TATTATTTATTAATAATA
1 TATTATTTATTAATAATA
**
8767638 TATTATTTATTCGT-ATAA
1 TATTATTTATTAATAAT-A
8767656 TATTATTTATTAATA
1 TATTATTTATTAATA
8767671 TATTGTTATA
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
16 5 0.09
17 4 0.07
18 38 0.70
19 7 0.13
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (18 bp):
TATTATTTATTAATAATA
Found at i:8767657 original size:46 final size:45
Alignment explanation
Indices: 8767607--8767725 Score: 116
Period size: 46 Copynumber: 2.6 Consensus size: 45
8767597 TATTATTTAT
*
8767607 TAATATATTAATATATTAT-TTATTA-ATAATATATTATTTATTCGTA
1 TAATATATTAAT-TAATATATTATTATAT-A-ATATTATTTATTCGTA
* * *
8767653 TAATATTATTTATTAATATATTGTTATATAATATTATTTATTTGTA
1 TAATA-TATTAATTAATATATTATTATATAATATTATTTATTCGTA
* * *
8767699 TAATATTATTTATTTATATAATATTAT
1 TAATA-TATTAATTAATATATTATTAT
8767726 TTATAAGTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
46 49 0.78
47 12 0.19
48 2 0.03
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (45 bp):
TAATATATTAATTAATATATTATTATATAATATTATTTATTCGTA
Found at i:8767672 original size:18 final size:17
Alignment explanation
Indices: 8767619--8767729 Score: 101
Period size: 18 Copynumber: 6.6 Consensus size: 17
8767609 ATATATTAAT
8767619 ATATTATTTATTA-ATAA
1 ATATTATTTATTATAT-A
*
8767636 TATATTATTTATTCGTATA
1 -ATATTATTTATT-ATATA
8767655 ATATTA--T-TTAT-TA
1 ATATTATTTATTATATA
*
8767668 ATA-TA-TTGTTATATA
1 ATATTATTTATTATATA
*
8767683 ATATTATTTATTTGTATA
1 ATATTATTTA-TTATATA
8767701 ATATTATTTATTTATATA
1 ATATTATTTA-TTATATA
8767719 ATATTATTTAT
1 ATATTATTTAT
8767730 AAGTAAAATT
Statistics
Matches: 80, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
12 2 0.03
13 6 0.08
14 5 0.06
15 7 0.09
16 3 0.04
17 3 0.04
18 51 0.64
19 1 0.01
20 2 0.03
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.59
Consensus pattern (17 bp):
ATATTATTTATTATATA
Done.