Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 55 of 129
Found at i:10732563 original size:20 final size:20
Alignment explanation
Indices: 10732538--10732607 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
10732528 TGATGAATTA
10732538 TTGCATGATAATTAATATAT
1 TTGCATGATAATTAATATAT
* *
10732558 TTGCATG-TGATT-ATATTT
1 TTGCATGATAATTAATATAT
*
10732576 GATTGCATGGTAATTAATATAT
1 --TTGCATGATAATTAATATAT
10732598 TTGCATGATA
1 TTGCATGATA
10732608 TTATATTTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
18 5 0.12
19 4 0.10
20 23 0.56
21 4 0.10
22 5 0.12
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.46
Consensus pattern (20 bp):
TTGCATGATAATTAATATAT
Found at i:10732622 original size:40 final size:40
Alignment explanation
Indices: 10732537--10732615 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
10732527 ATGATGAATT
10732537 ATTGCATGATAATTAATATATTTGCATGTGATTATATTTG
1 ATTGCATGATAATTAATATATTTGCATGTGATTATATTTG
*
10732577 ATTGCATGGTAATTAATATATTTGCATGAT-ATTATATTT
1 ATTGCATGATAATTAATATATTTGCATG-TGATTATATTT
10732616 TGTTGCAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (40 bp):
ATTGCATGATAATTAATATATTTGCATGTGATTATATTTG
Found at i:10732640 original size:13 final size:13
Alignment explanation
Indices: 10732618--10732705 Score: 53
Period size: 13 Copynumber: 7.0 Consensus size: 13
10732608 TTATATTTTG
*
10732618 TTGCAAGATATTT
1 TTGCATGATATTT
*
10732631 TTGCATGATAATTA
1 TTGCATGAT-ATTT
*
10732645 TTGTATGATA--T
1 TTGCATGATATTT
*
10732656 TT---T-ATATTA
1 TTGCATGATATTT
*
10732665 TTGCATGATACTT
1 TTGCATGATATTT
*
10732678 TTACATGATAATTTT
1 TTGCATGAT-A-TTT
10732693 TTGCATGATATTT
1 TTGCATGATATTT
10732706 AATGATGTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
7 3 0.05
8 1 0.02
9 2 0.04
11 2 0.04
12 1 0.02
13 24 0.43
14 13 0.23
15 10 0.18
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (13 bp):
TTGCATGATATTT
Found at i:10732656 original size:47 final size:48
Alignment explanation
Indices: 10732598--10732704 Score: 135
Period size: 47 Copynumber: 2.2 Consensus size: 48
10732588 ATTAATATAT
* * * *
10732598 TTGCATGATATTATATTTTGTTGCAAGATATTTTTGCATGATAA-TTA
1 TTGCATGATATTATATATTATTGCAAGATACTTTTACATGATAATTTA
* * * *
10732645 TTGTATGATATTTTATATTATTGCATGATACTTTTACATGATAATTTT
1 TTGCATGATATTATATATTATTGCAAGATACTTTTACATGATAATTTA
10732693 TTGCATGATATT
1 TTGCATGATATT
10732705 TAATGATGTT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
47 37 0.74
48 13 0.26
ACGTcount: A:0.29, C:0.07, G:0.13, T:0.51
Consensus pattern (48 bp):
TTGCATGATATTATATATTATTGCAAGATACTTTTACATGATAATTTA
Found at i:10732666 original size:20 final size:21
Alignment explanation
Indices: 10732641--10732680 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
10732631 TTGCATGATA
*
10732641 ATTATTGTATGATA-TTTTAT
1 ATTATTGCATGATACTTTTAT
10732661 ATTATTGCATGATACTTTTA
1 ATTATTGCATGATACTTTTA
10732681 CATGATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.30, C:0.05, G:0.10, T:0.55
Consensus pattern (21 bp):
ATTATTGCATGATACTTTTAT
Found at i:10732692 original size:34 final size:34
Alignment explanation
Indices: 10732625--10732692 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
10732615 TTGTTGCAAG
* **
10732625 ATATTTTTGCATGATAATTATTGTATGATATTTT
1 ATATTATTGCATGATAATTATTACATGATATTTT
*
10732659 ATATTATTGCATGATACTT-TTACATGATAATTTT
1 ATATTATTGCATGATAATTATTACATGAT-ATTTT
10732693 TTGCATGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 7 0.24
34 22 0.76
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.53
Consensus pattern (34 bp):
ATATTATTGCATGATAATTATTACATGATATTTT
Found at i:10732807 original size:20 final size:20
Alignment explanation
Indices: 10732729--10732811 Score: 73
Period size: 20 Copynumber: 4.2 Consensus size: 20
10732719 TTTCCATGAT
*
10732729 TTATTGCATGATGATTGT-TA
1 TTATTGCATGATAATT-TATA
* *
10732749 TTACTGCATGATAATTAATA
1 TTATTGCATGATAATTTATA
* *
10732769 -TATTTGCATGAGAACTTATA
1 TTA-TTGCATGATAATTTATA
*
10732789 TTATTGCATGATTATTTAT-
1 TTATTGCATGATAATTTATA
10732808 TTAT
1 TTAT
10732812 AACATGATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
19 6 0.12
20 42 0.84
21 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.48
Consensus pattern (20 bp):
TTATTGCATGATAATTTATA
Found at i:10733450 original size:54 final size:54
Alignment explanation
Indices: 10733361--10733465 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
10733351 CTAAATTACC
* *
10733361 CCAAATATCTAGAAATTCCAAAAGAAAGCCCAAGAATAAAAGCCCTCAAAGGAA
1 CCAAATACCTAGAAATTCCAAAAGAAAACCCAAGAATAAAAGCCCTCAAAGGAA
* * *
10733415 CCAAATACCTAGAAATTCCATAAGAAAACCTAAGAATCAAAGCCCTCAAAG
1 CCAAATACCTAGAAATTCCAAAAGAAAACCCAAGAATAAAAGCCCTCAAAG
10733466 TTCCTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.50, C:0.24, G:0.11, T:0.14
Consensus pattern (54 bp):
CCAAATACCTAGAAATTCCAAAAGAAAACCCAAGAATAAAAGCCCTCAAAGGAA
Found at i:10736464 original size:22 final size:22
Alignment explanation
Indices: 10736436--10736481 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
10736426 TTAATTAGTC
* *
10736436 AAAATAACAAAGTTATGGTTGG
1 AAAATAAAAAAATTATGGTTGG
10736458 AAAATAAAAAAATTATGGTTGG
1 AAAATAAAAAAATTATGGTTGG
10736480 AA
1 AA
10736482 TGAGAAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.52, C:0.02, G:0.20, T:0.26
Consensus pattern (22 bp):
AAAATAAAAAAATTATGGTTGG
Found at i:10737807 original size:14 final size:14
Alignment explanation
Indices: 10737788--10737816 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10737778 ATGCAATAGA
10737788 TTCTTTATAATTGT
1 TTCTTTATAATTGT
10737802 TTCTTTATAATTGT
1 TTCTTTATAATTGT
10737816 T
1 T
10737817 AATGTTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (14 bp):
TTCTTTATAATTGT
Found at i:10741731 original size:51 final size:51
Alignment explanation
Indices: 10741650--10741751 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
10741640 AATATTAATC
* * *
10741650 ATAATATTATCTTATCATATTTTATTATAATTTTATATATCAAATACAATT
1 ATAATATTATCTTATCATATCTTATGATAATTTTATAAATCAAATACAATT
* * * * *
10741701 ATAATATTGTTTTATTATATCTTATGATAATTTTATAAATTAAATATAATT
1 ATAATATTATCTTATCATATCTTATGATAATTTTATAAATCAAATACAATT
10741752 TTAAATTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (51 bp):
ATAATATTATCTTATCATATCTTATGATAATTTTATAAATCAAATACAATT
Found at i:10741774 original size:51 final size:51
Alignment explanation
Indices: 10741666--10741774 Score: 114
Period size: 51 Copynumber: 2.1 Consensus size: 51
10741656 TTATCTTATC
* * * * *
10741666 ATATTTTATTATAATTTTATATATCAAATACAATTATAATATTGTTTTATT
1 ATATCTTATGATAATTTTATAAATCAAATACAATTATAATATTGTTTAAAT
* * *
10741717 ATATCTTATGATAATTTTATAAATTAAATATAATTTTAA-ATT-TATTAAAT
1 ATATCTTATGATAATTTTATAAATCAAATACAATTATAATATTGT-TTAAAT
10741767 ATCATCTT
1 AT-ATCTT
10741775 TTAAAATAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
49 1 0.02
50 9 0.19
51 38 0.79
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (51 bp):
ATATCTTATGATAATTTTATAAATCAAATACAATTATAATATTGTTTAAAT
Found at i:10741786 original size:23 final size:21
Alignment explanation
Indices: 10741738--10741786 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
10741728 TAATTTTATA
*
10741738 AATTAAATATAATTTTAAATT
1 AATTAAATATAATTTTAAAAT
* *
10741759 TATTAAATATCATCTTTTAAAAT
1 AATTAAATAT-A-ATTTTAAAAT
10741782 AATTA
1 AATTA
10741787 TTCAATAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 9 0.41
22 1 0.05
23 12 0.55
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTAAATATAATTTTAAAAT
Found at i:10744517 original size:14 final size:16
Alignment explanation
Indices: 10744498--10744536 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
10744488 GCATGTTATT
*
10744498 AAAATTATA-ATT-TA
1 AAAATTATAGATTAAA
10744512 AAAATTATAGATTAAA
1 AAAATTATAGATTAAA
10744528 AAAATTATA
1 AAAATTATA
10744537 TGCACTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 3 0.14
16 10 0.45
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
AAAATTATAGATTAAA
Found at i:10745584 original size:78 final size:76
Alignment explanation
Indices: 10745438--10745584 Score: 188
Period size: 78 Copynumber: 1.9 Consensus size: 76
10745428 GTTTATTCAT
* * *
10745438 ATGCTTTAACTCCAACTCTTTAAGGTCAAATCGTCACATTTTCACTCTTTTCTAGGTATTATTTT
1 ATGCTTTAACTCCAACTCTTTAAGGTCAAATCATCACATTTTCACTCTTTTCAAGGTATTA-TCT
10745503 TTTTAGGTATTC
65 TTTTAGGTATTC
* * * *
10745515 ATGCTTTTAACTCCCACTCTTTAAGGTTAAATCATCACATTTTTCACTTTTTTTCAAGGTGTTA-
1 ATGC-TTTAACTCCAACTCTTTAAGGTCAAATCATCACA-TTTTCAC-TCTTTTCAAGGTATTAT
10745579 CTTTTT
63 CTTTTT
10745585 CTACTTACAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
77 4 0.07
78 36 0.60
79 7 0.12
80 13 0.22
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.48
Consensus pattern (76 bp):
ATGCTTTAACTCCAACTCTTTAAGGTCAAATCATCACATTTTCACTCTTTTCAAGGTATTATCTT
TTTAGGTATTC
Found at i:10748682 original size:15 final size:15
Alignment explanation
Indices: 10748662--10748715 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
10748652 GAAAAAAATA
10748662 TATTTTTCATCTTTT
1 TATTTTTCATCTTTT
*
10748677 TATTTTTCTTCTATTT
1 TATTTTTCATCT-TTT
*
10748693 CAATTTTTCATCTTTT
1 -TATTTTTCATCTTTT
*
10748709 CATTTTT
1 TATTTTT
10748716 TCTTTCCATC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 17 0.52
16 6 0.18
17 10 0.30
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTTCATCTTTT
Found at i:10748700 original size:17 final size:16
Alignment explanation
Indices: 10748663--10748719 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
10748653 AAAAAAATAT
* *
10748663 ATTTTTCATCTTTT-T
1 ATTTTTCTTCTTTTCA
10748678 ATTTTTCTTCTATTTCA
1 ATTTTTCTTCT-TTTCA
*
10748695 ATTTTTCATCTTTTCA
1 ATTTTTCTTCTTTTCA
*
10748711 TTTTTTCTT
1 ATTTTTCTT
10748720 TCCATCCTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 10 0.29
16 15 0.43
17 10 0.29
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTCTTCTTTTCA
Found at i:10751750 original size:12 final size:13
Alignment explanation
Indices: 10751728--10751802 Score: 52
Period size: 12 Copynumber: 5.8 Consensus size: 13
10751718 TGTGAGTTTG
10751728 ATTATTTAATTAT
1 ATTATTTAATTAT
10751741 ATTA-TTAATTA-
1 ATTATTTAATTAT
* *
10751752 AATATTTAATAAT
1 ATTATTTAATTAT
10751765 -TGTATGTTAATTAT
1 AT-TAT-TTAATTAT
*
10751779 A--ATTTAATAATT
1 ATTATTTAATTA-T
10751791 AATTATTTAATT
1 -ATTATTTAATT
10751803 GATTATATGA
Statistics
Matches: 47, Mismatches: 6, Indels: 16
0.68 0.09 0.23
Matches are distributed among these distances:
11 9 0.19
12 16 0.34
13 8 0.17
14 7 0.15
15 7 0.15
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.55
Consensus pattern (13 bp):
ATTATTTAATTAT
Found at i:10752428 original size:30 final size:30
Alignment explanation
Indices: 10752394--10752453 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
10752384 AATTAGAATC
10752394 TAACTAGACAAATTTATTAAACATATTTTT
1 TAACTAGACAAATTTATTAAACATATTTTT
10752424 TAACTAGACAAATTTATTAAACATATTTTT
1 TAACTAGACAAATTTATTAAACATATTTTT
10752454 AAAATAGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (30 bp):
TAACTAGACAAATTTATTAAACATATTTTT
Found at i:10752443 original size:17 final size:17
Alignment explanation
Indices: 10752394--10752443 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
10752384 AATTAGAATC
10752394 TAACTAGACAAATTTAT
1 TAACTAGACAAATTTAT
* *
10752411 T-A--A-ACATATTTTT
1 TAACTAGACAAATTTAT
10752424 TAACTAGACAAATTTAT
1 TAACTAGACAAATTTAT
10752441 TAA
1 TAA
10752444 ACATATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
13 9 0.36
14 2 0.08
16 2 0.08
17 12 0.48
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (17 bp):
TAACTAGACAAATTTAT
Found at i:10753510 original size:12 final size:11
Alignment explanation
Indices: 10753491--10753524 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
10753481 TAATTGCGAT
*
10753491 TTTTAAAAAAC
1 TTTTAAAAAAA
10753502 TTTTAAAAAAA
1 TTTTAAAAAAA
*
10753513 TGTTAAAAAAA
1 TTTTAAAAAAA
10753524 T
1 T
10753525 ACAGATAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (11 bp):
TTTTAAAAAAA
Found at i:10754148 original size:18 final size:18
Alignment explanation
Indices: 10754107--10754168 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 18
10754097 AAAAATTATC
* *
10754107 TAAAAAATGC-AACAAAT
1 TAAAAAATTCTAAAAAAT
*
10754124 TCAAAAAAATCTAAAAAACT
1 T-AAAAAATTCTAAAAAA-T
*
10754144 TAAAAAATTTTAAAAAAT
1 TAAAAAATTCTAAAAAAT
10754162 TAAAAAA
1 TAAAAAA
10754169 ATTAAAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 1 0.03
18 15 0.41
19 19 0.51
20 2 0.05
ACGTcount: A:0.68, C:0.08, G:0.02, T:0.23
Consensus pattern (18 bp):
TAAAAAATTCTAAAAAAT
Found at i:10754151 original size:28 final size:27
Alignment explanation
Indices: 10754081--10754185 Score: 81
Period size: 27 Copynumber: 3.8 Consensus size: 27
10754071 AATTTTTTCA
* *
10754081 AAAAAACATAAAAAA-TAAAAATTATCT
1 AAAAAACTTAAAAAATTAAAAA-AATCT
* *
10754108 AAAAAA-TGCAACAAATTCAAAAAAATCT
1 AAAAAACT-TAAAAAATT-AAAAAAATCT
*
10754136 AAAAAACTTAAAAAATTTTAAAAAAT-T
1 AAAAAACTTAAAAAA-TTAAAAAAATCT
* *
10754163 AAAAAAATTAAAAATATGAAAAA
1 AAAAAACTTAAAAA-ATTAAAAA
10754186 GAATTTTGAG
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
27 30 0.48
28 24 0.39
29 8 0.13
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.22
Consensus pattern (27 bp):
AAAAAACTTAAAAAATTAAAAAAATCT
Found at i:10754169 original size:9 final size:9
Alignment explanation
Indices: 10754120--10754190 Score: 70
Period size: 9 Copynumber: 7.6 Consensus size: 9
10754110 AAAATGCAAC
10754120 AAATTCAAAA
1 AAATT-AAAA
10754130 AAATCTAAAA
1 AAAT-TAAAA
*
10754140 AACTTAAAA
1 AAATTAAAA
* *
10754149 AATTTTAAA
1 AAATTAAAA
10754158 AAATTAAAA
1 AAATTAAAA
10754167 AAATTAAAA
1 AAATTAAAA
* *
10754176 ATATGAAAA
1 AAATTAAAA
10754185 AGAATT
1 A-AATT
10754191 TTGAGTTTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
9 36 0.72
10 13 0.26
11 1 0.02
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.25
Consensus pattern (9 bp):
AAATTAAAA
Found at i:10754251 original size:25 final size:26
Alignment explanation
Indices: 10754223--10754286 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
10754213 AAAATTCCAC
10754223 AAAATTTCAAAAAATAT-GAAAAATTA
1 AAAATTTCAAAAAA-ATCGAAAAATTA
* *
10754249 AAAATCT-AAAAAAATCGCAAAATTA
1 AAAATTTCAAAAAAATCGAAAAATTA
*
10754274 AAAATTTTAAAAA
1 AAAATTTCAAAAA
10754287 TTAAAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 2 0.06
25 20 0.61
26 11 0.33
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.25
Consensus pattern (26 bp):
AAAATTTCAAAAAAATCGAAAAATTA
Found at i:10754261 original size:17 final size:16
Alignment explanation
Indices: 10754203--10754299 Score: 59
Period size: 17 Copynumber: 5.6 Consensus size: 16
10754193 GAGTTTTGAA
10754203 AAAAAAATTAAAAATT
1 AAAAAAATTAAAAATT
* * *
10754219 CCACAAAATTTCAAAAAAT
1 --AAAAAAATT-AAAAATT
*
10754238 ATGAAAAATTAAAAATCT
1 A-AAAAAATTAAAAAT-T
**
10754256 AAAAAAATCGCAAAATT
1 AAAAAAAT-TAAAAATT
**
10754273 AAAAATTTTAAAAATT
1 AAAAAAATTAAAAATT
10754289 AAAAAATATTA
1 AAAAAA-ATTA
10754300 GCTATTAAAA
Statistics
Matches: 59, Mismatches: 15, Indels: 11
0.69 0.18 0.13
Matches are distributed among these distances:
16 11 0.19
17 22 0.37
18 20 0.34
19 6 0.10
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.26
Consensus pattern (16 bp):
AAAAAAATTAAAAATT
Found at i:10756155 original size:21 final size:21
Alignment explanation
Indices: 10756109--10756181 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 21
10756099 TTTTGTGAAG
10756109 TTTTTTAGATTTTTTTGAAAA
1 TTTTTTAGATTTTTTTGAAAA
* *
10756130 ATTTTTGGATTTTTATT--AAA
1 TTTTTTAGATTTTT-TTGAAAA
* *
10756150 TTTTTTA-A-TTCTTT-AAAC
1 TTTTTTAGATTTTTTTGAAAA
10756168 TTTTTTA-ATTTTTT
1 TTTTTTAGATTTTTT
10756182 AGAATTTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
17 2 0.05
18 13 0.31
19 5 0.12
20 8 0.19
21 12 0.29
22 2 0.05
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (21 bp):
TTTTTTAGATTTTTTTGAAAA
Found at i:10756171 original size:18 final size:17
Alignment explanation
Indices: 10756145--10756191 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
10756135 TGGATTTTTA
10756145 TTAAATTTTTTAATTCT
1 TTAAATTTTTTAATTCT
*
10756162 TTAAACTTTTTTAATTTT
1 TTAAA-TTTTTTAATTCT
10756180 TTAGAATTTTTT
1 TTA-AATTTTTT
10756192 TTTTAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 5 0.19
18 20 0.74
19 2 0.07
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (17 bp):
TTAAATTTTTTAATTCT
Found at i:10756203 original size:9 final size:9
Alignment explanation
Indices: 10756065--10756191 Score: 55
Period size: 10 Copynumber: 13.4 Consensus size: 9
10756055 TTTCATAAAA
*
10756065 TTTTACATT
1 TTTTAAATT
10756074 TTTT-AA-T
1 TTTTAAATT
*
10756081 TTTAAAATT
1 TTTTAAATT
*
10756090 TTTAAAAGTT
1 TTTTAAA-TT
*
10756100 TTTGTGAAGTT
1 TTT-T-AAATT
*
10756111 TTTTAGATTT
1 TTTTA-AATT
10756121 TTTTGAAAAATT
1 TTTT---AAATT
** *
10756133 TTTGGATTT
1 TTTTAAATT
10756142 TTATTAAATT
1 TT-TTAAATT
10756152 TTTT-AATT
1 TTTTAAATT
*
10756160 CTTTAAACTT
1 TTTTAAA-TT
10756170 TTTT-AATT
1 TTTTAAATT
10756178 TTTTAGAATT
1 TTTTA-AATT
10756188 TTTT
1 TTTT
10756192 TTTTAAATTT
Statistics
Matches: 90, Mismatches: 14, Indels: 27
0.69 0.11 0.21
Matches are distributed among these distances:
7 4 0.04
8 16 0.18
9 24 0.27
10 32 0.36
11 5 0.06
12 8 0.09
13 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.62
Consensus pattern (9 bp):
TTTTAAATT
Found at i:10758859 original size:22 final size:22
Alignment explanation
Indices: 10758833--10758875 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10758823 GTTAAAGATC
*
10758833 GAAATTAA-AATGCAAATGATAT
1 GAAATTAACAAT-CAAAAGATAT
10758855 GAAATTAACAATCAAAAGATA
1 GAAATTAACAATCAAAAGATA
10758876 ACATACTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.23
Consensus pattern (22 bp):
GAAATTAACAATCAAAAGATAT
Found at i:10764189 original size:9 final size:9
Alignment explanation
Indices: 10764175--10764239 Score: 57
Period size: 9 Copynumber: 7.4 Consensus size: 9
10764165 TAATTCAATT
10764175 TTAATTGAA
1 TTAATTGAA
10764184 TTAATTG-A
1 TTAATTGAA
10764192 TTAAATT-AA
1 TT-AATTGAA
*
10764201 TTTAATTTAA
1 -TTAATTGAA
10764211 TTAATTG-A
1 TTAATTGAA
*
10764219 TCAATT-AA
1 TTAATTGAA
*
10764227 TGAATTGAA
1 TTAATTGAA
10764236 TTAA
1 TTAA
10764240 ATTTGATCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
8 15 0.33
9 27 0.59
10 4 0.09
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.46
Consensus pattern (9 bp):
TTAATTGAA
Found at i:10764245 original size:27 final size:26
Alignment explanation
Indices: 10764177--10764252 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 26
10764167 ATTCAATTTT
* *
10764177 AATTGAATTAATTGATTAAATTAATTT
1 AATTGAATTAATTGA-TCAATTAATTG
*
10764204 AATTTAATTAATTGATCAATTAA-TG
1 AATTGAATTAATTGATCAATTAATTG
10764229 AATTGAATTAAATTTGATCAATTA
1 AATTGAATT-AA-TTGATCAATTA
10764253 TTAAAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.21
26 9 0.21
27 25 0.58
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.45
Consensus pattern (26 bp):
AATTGAATTAATTGATCAATTAATTG
Found at i:10765392 original size:31 final size:31
Alignment explanation
Indices: 10765357--10765419 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
10765347 AAAGATTGAA
**
10765357 ACTTTTTGTAGGTAGTTGTCAAAATTAGAAT
1 ACTTTTTGTAACTAGTTGTCAAAATTAGAAT
* *
10765388 ACTTTTTGTAACTAGTTGTTAAAATTTGAAT
1 ACTTTTTGTAACTAGTTGTCAAAATTAGAAT
10765419 A
1 A
10765420 AAAGTAGTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.44
Consensus pattern (31 bp):
ACTTTTTGTAACTAGTTGTCAAAATTAGAAT
Found at i:10765686 original size:66 final size:66
Alignment explanation
Indices: 10765615--10765745 Score: 176
Period size: 66 Copynumber: 2.0 Consensus size: 66
10765605 AAAGTTTTAT
* * * * *
10765615 ATAGAATTTATATTTATAAGTGACATA-ATT-TTACATAAATTTTTATTTTGAATGAACAATTAT
1 ATAGAATCTACATTTATAAGT-A-ATAGATTCCTACATAAAATTTTATTTTAAATGAACAATTAT
10765678 AAC
64 AAC
*
10765681 ATAGAATCTACATTTATAAGTAATAGATTCCTACATAAAATTTTATTTTAAATGAATAATTATAA
1 ATAGAATCTACATTTATAAGTAATAGATTCCTACATAAAATTTTATTTTAAATGAACAATTATAA
10765746 TATTATAGTA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
64 3 0.05
65 4 0.07
66 50 0.88
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (66 bp):
ATAGAATCTACATTTATAAGTAATAGATTCCTACATAAAATTTTATTTTAAATGAACAATTATAA
C
Found at i:10766135 original size:20 final size:20
Alignment explanation
Indices: 10766112--10766152 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10766102 TTATAATTCA
*
10766112 AATACTATATTAAAAATTTT
1 AATACTATATCAAAAATTTT
* *
10766132 AATATTATATCAAATATTTT
1 AATACTATATCAAAAATTTT
10766152 A
1 A
10766153 TTATAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
AATACTATATCAAAAATTTT
Found at i:10766648 original size:2 final size:2
Alignment explanation
Indices: 10766641--10766669 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10766631 TCCTAACCCC
10766641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10766670 ATGACTTGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10769239 original size:30 final size:30
Alignment explanation
Indices: 10769196--10769256 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
10769186 TGTGGGTAAT
10769196 TGTGGGCTACATTTAATGACCCTAGGCAAG
1 TGTGGGCTACATTTAATGACCCTAGGCAAG
* * * *
10769226 TGTGGGTTGCATTTAATGATCCTAGGTAAG
1 TGTGGGCTACATTTAATGACCCTAGGCAAG
10769256 T
1 T
10769257 TAGAGGTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (30 bp):
TGTGGGCTACATTTAATGACCCTAGGCAAG
Found at i:10771281 original size:26 final size:27
Alignment explanation
Indices: 10771218--10771293 Score: 100
Period size: 26 Copynumber: 2.9 Consensus size: 27
10771208 TAGAAATAAG
* *
10771218 AGTTTGCTCAAATCTTGCTAAGTAAAA
1 AGTTTTCTCAAATCATGCTAAGTAAAA
* * *
10771245 AGTTTTTTCAATTCATGCTAAGT-AGA
1 AGTTTTCTCAAATCATGCTAAGTAAAA
10771271 AGTTTTCTCAAATCATGCTAAGT
1 AGTTTTCTCAAATCATGCTAAGT
10771294 TTATTTTAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 23 0.55
27 19 0.45
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (27 bp):
AGTTTTCTCAAATCATGCTAAGTAAAA
Found at i:10777035 original size:2 final size:2
Alignment explanation
Indices: 10777028--10777056 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10777018 GATGCTTAAT
10777028 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10777057 GATTTGTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10778566 original size:24 final size:24
Alignment explanation
Indices: 10778517--10778566 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
10778507 GTAATTTTTT
*
10778517 AATAAATTTATTAAATTTGATCTA
1 AATAAATTTATTAAATTCGATCTA
*
10778541 AATAAATTTATTTAAA-TCGATTTA
1 AATAAATTTA-TTAAATTCGATCTA
10778565 AA
1 AA
10778567 ATATATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
AATAAATTTATTAAATTCGATCTA
Found at i:10779131 original size:44 final size:45
Alignment explanation
Indices: 10779083--10779167 Score: 102
Period size: 44 Copynumber: 1.9 Consensus size: 45
10779073 GAGTAAATAT
10779083 TTATTAATT-ATCAAAATAAAAAT-TATTTAATAATTTTTTAGAAA
1 TTATT-ATTCATCAAAATAAAAATATATTTAATAATTTTTTAGAAA
* * ** *
10779127 TTATTCTTCATCAAAATTAATTTATATTTTATAATTTTTTA
1 TTATTATTCATCAAAATAAAAATATATTTAATAATTTTTTA
10779168 TAAAATTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
43 2 0.06
44 16 0.47
45 16 0.47
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.52
Consensus pattern (45 bp):
TTATTATTCATCAAAATAAAAATATATTTAATAATTTTTTAGAAA
Found at i:10779305 original size:17 final size:16
Alignment explanation
Indices: 10779278--10779318 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
10779268 ATATAATATC
10779278 AAATA-TAATAATTTA
1 AAATATTAATAATTTA
10779293 AAATTATTAATAATTTA
1 AAA-TATTAATAATTTA
*
10779310 TAATATTAA
1 AAATATTAA
10779319 ATCAAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 3 0.13
16 8 0.35
17 12 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATATTAATAATTTA
Found at i:10788076 original size:15 final size:15
Alignment explanation
Indices: 10788058--10788088 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10788048 ATTTTTTTTG
10788058 TTTTTTATCTTTTAT
1 TTTTTTATCTTTTAT
*
10788073 TTTTTTATTTTTTAT
1 TTTTTTATCTTTTAT
10788088 T
1 T
10788089 CTTTGCTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTATCTTTTAT
Found at i:10788077 original size:22 final size:23
Alignment explanation
Indices: 10788050--10788092 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
10788040 TTGAAAAGAT
*
10788050 TTTTTTTGTTTTTTA-TCTTTTA
1 TTTTTTTATTTTTTATTCTTTTA
10788072 TTTTTTTATTTTTTATTCTTT
1 TTTTTTTATTTTTTATTCTTT
10788093 GCTTCTTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.09, C:0.05, G:0.02, T:0.84
Consensus pattern (23 bp):
TTTTTTTATTTTTTATTCTTTTA
Found at i:10788183 original size:16 final size:16
Alignment explanation
Indices: 10788172--10788219 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 16
10788162 AGAAAAACTT
10788172 AAGAAAATAAAAATAA
1 AAGAAAATAAAAATAA
*
10788188 AAGAAAATAAAATCTAAA
1 AAGAAAATAAAA-AT-AA
*
10788206 AATAAAATAAAAAT
1 AAGAAAATAAAAAT
10788220 GGAAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 12 0.44
17 2 0.07
18 13 0.48
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (16 bp):
AAGAAAATAAAAATAA
Found at i:10789171 original size:8 final size:8
Alignment explanation
Indices: 10789122--10789151 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
10789112 GATACACTAC
10789122 AATATAAT
1 AATATAAT
10789130 AATATAAT
1 AATATAAT
*
10789138 AATATAGT
1 AATATAAT
10789146 AATATA
1 AATATA
10789152 GTTACGCTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (8 bp):
AATATAAT
Found at i:10790249 original size:86 final size:84
Alignment explanation
Indices: 10790125--10790336 Score: 241
Period size: 86 Copynumber: 2.5 Consensus size: 84
10790115 GCAAGAATAT
* * * * * * * *
10790125 AAGATTCGCAGGATTTCAAGTTTTGCAAAAGTTCTAGATATGC-AAAGGTTTCAGGTTCACAAGG
1 AAGATTCACAAGATTGCAAATTTTAC-AAAGTTCTAGAT-T-CAAAAGATTTCAAGTTCACAAAG
*
10790189 ATTTTTAGATTCACAAGAAAGA
63 ACTTTTAGATTCACAAGAAAGA
*
10790211 AAGATTCATAAGATT-CTAAATTTTACAAATGTTCTAGATTCATAAAGATTTCAAGTTCACAAAG
1 AAGATTCACAAGATTGC-AAATTTTACAAA-GTTCTAGATTCA-AAAGATTTCAAGTTCACAAAG
10790275 ACTTTTAGATTCACAAGAAAGA
63 ACTTTTAGATTCACAAGAAAGA
*
10790297 AAGATTTACAAGATTGCAAATTTTGA-AAAGTTCTAGATTC
1 AAGATTCACAAGATTGCAAATTTT-ACAAAGTTCTAGATTC
10790337 GTAAAGATGC
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
84 1 0.01
85 16 0.15
86 90 0.83
87 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (84 bp):
AAGATTCACAAGATTGCAAATTTTACAAAGTTCTAGATTCAAAAGATTTCAAGTTCACAAAGACT
TTTAGATTCACAAGAAAGA
Found at i:10791845 original size:18 final size:18
Alignment explanation
Indices: 10791824--10791871 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
10791814 GCCCTTTCAA
*
10791824 TTTTTTTTTCAATTTTTGT
1 TTTTTTTTTC-ATTTTTCT
*
10791843 TTTTTTTTTCTTTTTTCT
1 TTTTTTTTTCATTTTTCT
10791861 TTTTTTTTTCA
1 TTTTTTTTTCA
10791872 AGAAAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.06, C:0.08, G:0.02, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTCATTTTTCT
Found at i:10795704 original size:13 final size:12
Alignment explanation
Indices: 10795640--10795714 Score: 53
Period size: 12 Copynumber: 5.9 Consensus size: 12
10795630 TTTAAACTAG
*
10795640 TAAAATAAAATA
1 TAAAATAAAAAA
* **
10795652 CAAAATTGAAAA
1 TAAAATAAAAAA
10795664 TAAAATGAAAACTTAA
1 TAAAAT-AAAA---AA
*
10795680 GAAAAT-AAAAA
1 TAAAATAAAAAA
10795691 TAAAATCAAAAAA
1 TAAAAT-AAAAAA
10795704 TAAAATAAAAA
1 TAAAATAAAAA
10795715 GGGAAAAAGG
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
11 7 0.15
12 18 0.38
13 13 0.27
14 3 0.06
16 7 0.15
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (12 bp):
TAAAATAAAAAA
Found at i:10795714 original size:19 final size:19
Alignment explanation
Indices: 10795641--10795714 Score: 55
Period size: 19 Copynumber: 3.8 Consensus size: 19
10795631 TTAAACTAGT
**
10795641 AAAATAAAATACAAAATTG
1 AAAATAAAATACAAAATAA
*
10795660 AAAATAAAATGA-AAACTTAA
1 AAAATAAAAT-ACAAA-ATAA
*
10795680 GAAAATAAAA-ATAAAATCAA
1 -AAAATAAAATACAAAAT-AA
10795700 AAAATAAAATA-AAAA
1 AAAATAAAATACAAAA
10795715 GGGAAAAAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
19 28 0.62
20 8 0.18
21 9 0.20
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (19 bp):
AAAATAAAATACAAAATAA
Found at i:10796576 original size:3 final size:3
Alignment explanation
Indices: 10796568--10796712 Score: 121
Period size: 3 Copynumber: 50.7 Consensus size: 3
10796558 GAAAATAAAT
*
10796568 TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
10796616 T-A TGA T-A TAC T-A CAA T-A TAA TAA TTAA TAA T-A TAA TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA T-AA
* * * *
10796658 TAA T-A TAA TAA T-A TAG TAA T-A TAG TTA CAA T-A TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10796701 TATA TAA TAA TA
1 TA-A TAA TAA TA
10796713 TATCAAACTA
Statistics
Matches: 115, Mismatches: 14, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
2 18 0.16
3 88 0.77
4 9 0.08
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:10796591 original size:18 final size:17
Alignment explanation
Indices: 10796568--10796714 Score: 139
Period size: 18 Copynumber: 8.9 Consensus size: 17
10796558 GAAAATAAAT
*
10796568 TAATAATAATGATAATAA
1 TAATAATAATAAT-ATAA
10796586 TAATAATAATAATAATAA
1 TAATAATAATAAT-ATAA
*
10796604 TAATAATAATAATATGA
1 TAATAATAATAATATAA
* *
10796621 T-ATACT-ACAATATAA
1 TAATAATAATAATATAA
10796636 TAAT--TAATAATATAA
1 TAATAATAATAATATAA
10796651 TAAT-A-AATAATATAA
1 TAATAATAATAATATAA
* *
10796666 TAAT-ATAGTAATATAG
1 TAATAATAATAATATAA
* *
10796682 TTACAAT-ATAATATAA
1 TAATAATAATAATATAA
10796698 TAATATATAATAATATA
1 TAATA-ATAATAATATA
10796715 TCAAACTATA
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
14 1 0.01
15 35 0.32
16 26 0.24
17 8 0.07
18 38 0.35
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (17 bp):
TAATAATAATAATATAA
Found at i:10799755 original size:48 final size:48
Alignment explanation
Indices: 10799662--10799756 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 48
10799652 TCTAGAGTGA
*** * *
10799662 TGTTCCTTCTTGTTGGAAATGTAAAAAATCTAGAAAGCAATGAAAGCT
1 TGTTCCTTCTTGTTGGAAATGTAAAAAAAAAAAAAACCAATGAAAGCT
* *
10799710 TGTTCCTTGTTGTTGGAAATTTAAAAAAAAAAAAAACCTAA-GAAAGC
1 TGTTCCTTCTTGTTGGAAATGTAAAAAAAAAAAAAACC-AATGAAAGC
10799757 AATGAAGCTT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
48 37 0.95
49 2 0.05
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (48 bp):
TGTTCCTTCTTGTTGGAAATGTAAAAAAAAAAAAAACCAATGAAAGCT
Found at i:10810832 original size:6 final size:6
Alignment explanation
Indices: 10810821--10810857 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
10810811 CCCTGTTCCT
10810821 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC C
1 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC C
10810858 ATACCCCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (6 bp):
CTTCTC
Found at i:10812193 original size:121 final size:120
Alignment explanation
Indices: 10811971--10812214 Score: 382
Period size: 121 Copynumber: 2.0 Consensus size: 120
10811961 TTTGCCCTTT
*
10811971 TATCTATAATATGAACATTTGGGTATTGTCATCCTAGGTTTCATATTATTTTAGTTTCTTACTTT
1 TATCTATAATATGAACATTTGGGTATTGTCATCCTAGGCTTCATATTATTTTAGTTTCTTACTTT
* * ** *
10812036 TCTCTCCTTCTGATTTCCCTTATTTTGTTCTCTGATTTATGCATTGAAGTGCAAA
66 TCTCTCCTTCTCATTTCCCTTATTCTACTCTCTGATTTATGCATCGAAGTGCAAA
10812091 TATCTATAAATATGAACATTTGGGTATTGTCATCCTAGGCTTCATATTAATTTTAGTTTCTTACT
1 TATCTAT-AATATGAACATTTGGGTATTGTCATCCTAGGCTTCATATT-ATTTTAGTTTCTTACT
* * *
10812156 TTTCTCTCCTT-TCATTTCCCTTATTCTACTCTTTGATTTATGTATCGTAGTGCAAA
64 TTTCTCTCCTTCTCATTTCCCTTATTCTACTCTCTGATTTATGCATCGAAGTGCAAA
10812212 TAT
1 TAT
10812215 AAGGAAAACT
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
120 7 0.06
121 79 0.70
122 27 0.24
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (120 bp):
TATCTATAATATGAACATTTGGGTATTGTCATCCTAGGCTTCATATTATTTTAGTTTCTTACTTT
TCTCTCCTTCTCATTTCCCTTATTCTACTCTCTGATTTATGCATCGAAGTGCAAA
Found at i:10815453 original size:3 final size:3
Alignment explanation
Indices: 10815445--10815493 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
10815435 GTTAAGATAG
*
10815445 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10815492 AA
1 AA
10815494 GTAAGATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10825103 original size:9 final size:9
Alignment explanation
Indices: 10825080--10825113 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
10825070 CAATTTCAGG
10825080 TGAAGTGACA
1 TGAA-TGACA
*
10825090 GGAATGACA
1 TGAATGACA
10825099 TGAATGACA
1 TGAATGACA
10825108 TGAATG
1 TGAATG
10825114 TTTCCCAGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 19 0.86
10 3 0.14
ACGTcount: A:0.41, C:0.09, G:0.29, T:0.21
Consensus pattern (9 bp):
TGAATGACA
Found at i:10828464 original size:15 final size:15
Alignment explanation
Indices: 10828444--10828473 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10828434 CGTAATGTCT
*
10828444 AAAAATTGTGTTGAC
1 AAAAATTGTCTTGAC
10828459 AAAAATTGTCTTGAC
1 AAAAATTGTCTTGAC
10828474 CCCATCAACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (15 bp):
AAAAATTGTCTTGAC
Found at i:10830857 original size:24 final size:24
Alignment explanation
Indices: 10830825--10830880 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
10830815 CATCATCATT
* * *
10830825 ATCATCATCATCATTTTCTTTTTC
1 ATCATCATCATCATTATCATTGTC
*
10830849 ATCATCATCATTATTATCATTGTC
1 ATCATCATCATCATTATCATTGTC
10830873 ATCATCAT
1 ATCATCAT
10830881 TGTTTTGTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.02, T:0.48
Consensus pattern (24 bp):
ATCATCATCATCATTATCATTGTC
Found at i:10833829 original size:22 final size:24
Alignment explanation
Indices: 10833804--10833849 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
10833794 TTACCTTTTC
10833804 TTTGTA-AAAA-AATAAAAA-TAAA
1 TTTGTATAAAAGAA-AAAAACTAAA
10833826 TTTGTATAAAAGAAAAAAACTAAA
1 TTTGTATAAAAGAAAAAAACTAAA
10833850 GTACTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (24 bp):
TTTGTATAAAAGAAAAAAACTAAA
Found at i:10833844 original size:24 final size:22
Alignment explanation
Indices: 10833804--10833849 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
10833794 TTACCTTTTC
*
10833804 TTTGTAAAAAAATAAAAATAAA
1 TTTGTAAAAAAAAAAAAATAAA
*
10833826 TTTGTATAAAAGAAAAAAACTAAA
1 TTTGTA-AAAA-AAAAAAAATAAA
10833850 GTACTATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 4 0.20
24 10 0.50
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (22 bp):
TTTGTAAAAAAAAAAAAATAAA
Found at i:10841494 original size:16 final size:17
Alignment explanation
Indices: 10841473--10841505 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10841463 TCTTATCTTT
*
10841473 TATCATGTTAT-TTTTA
1 TATCATATTATATTTTA
10841489 TATCATATTATATTTTA
1 TATCATATTATATTTTA
10841506 AATTACCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (17 bp):
TATCATATTATATTTTA
Found at i:10841607 original size:14 final size:14
Alignment explanation
Indices: 10841567--10841614 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
10841557 TTAAAGCTTC
* *
10841567 GTAAACATCATTCA
1 GTAAACGTCATTTA
10841581 GTAAACGTCATTTA
1 GTAAACGTCATTTA
10841595 GTAAACGTCATTTA
1 GTAAACGTCATTTA
*
10841609 GAAAAC
1 GTAAAC
10841615 AAATCTATCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (14 bp):
GTAAACGTCATTTA
Found at i:10845554 original size:3 final size:3
Alignment explanation
Indices: 10845548--10845606 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
10845538 TTTCGAAATA
10845548 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10845596 AAT AAT AAT AA
1 AAT AAT AAT AA
10845607 AGATTTAAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10855847 original size:6 final size:6
Alignment explanation
Indices: 10855836--10855872 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
10855826 CCCTGTTCCT
10855836 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC C
1 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC C
10855873 ATACCCCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (6 bp):
CTTCTC
Found at i:10857210 original size:121 final size:120
Alignment explanation
Indices: 10856988--10857231 Score: 382
Period size: 121 Copynumber: 2.0 Consensus size: 120
10856978 CTTTGCCTTT
*
10856988 TATCTATAATATGAACATTTGGGTATTGTCATCCTAGGTTTCATATTATTTTAGTTTCTTACTTT
1 TATCTATAATATGAACATTTGGGTATTGTCATCCTAGGCTTCATATTATTTTAGTTTCTTACTTT
* * ** *
10857053 TCTCTCCTTCTGATTTCCCTTATTTTGTTCTCTGATTTATGCATTGAAGTGCAAA
66 TCTCTCCTTCTAATTTCCCTTATTCTACTCTCTGATTTATGCATCGAAGTGCAAA
10857108 TATCTATAAATATGAACATTTGGGTATTGTCATCCTAGGCTTCATATTATTTTAGTTTCTTACTT
1 TATCTAT-AATATGAACATTTGGGTATTGTCATCCTAGGCTTCATATTATTTTAGTTTCTTACTT
* * *
10857173 TTCTCTCCTT-TCAATTTCCCTTATTCTACTCTTTGATTTATGTATCGTAGTGCAAA
65 TTCTCTCCTTCT-AATTTCCCTTATTCTACTCTCTGATTTATGCATCGAAGTGCAAA
10857229 TAT
1 TAT
10857232 AAGGAAAACT
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
120 8 0.07
121 105 0.93
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (120 bp):
TATCTATAATATGAACATTTGGGTATTGTCATCCTAGGCTTCATATTATTTTAGTTTCTTACTTT
TCTCTCCTTCTAATTTCCCTTATTCTACTCTCTGATTTATGCATCGAAGTGCAAA
Found at i:10858785 original size:27 final size:27
Alignment explanation
Indices: 10858741--10858795 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
10858731 GTTAGACTAT
* * *
10858741 AAAAAAGACAACATAAAACTTAAAAAG
1 AAAAAAGACAAAAAAAAACATAAAAAG
* *
10858768 AAAATAGACAAAAAAAAACATAAGAAG
1 AAAAAAGACAAAAAAAAACATAAAAAG
10858795 A
1 A
10858796 GAAGGTTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.73, C:0.09, G:0.09, T:0.09
Consensus pattern (27 bp):
AAAAAAGACAAAAAAAAACATAAAAAG
Found at i:10860465 original size:3 final size:3
Alignment explanation
Indices: 10860459--10860508 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
10860449 TTAAAGATAG
*
10860459 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10860507 AA
1 AA
10860509 GTAAGATAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:10868519 original size:138 final size:138
Alignment explanation
Indices: 10868271--10868549 Score: 470
Period size: 138 Copynumber: 2.0 Consensus size: 138
10868261 GATTGTATTG
* *
10868271 ATTAATGAAAGATCGAGTCAAATCATTCTAAGATTGTATACGGGCCCTGTCTAACCAGATGATCA
1 ATTAATGAAAAATCGAGTCAAATCATTCTAAGATTGTATACGGGCCCTGTCTAACCAGAAGATCA
**
10868336 TCTTCTAGCAAACTCAGTTAAACTATCTTGGAACACATGTATGAGTAATTTCTCATTACTAGCAT
66 TCTTCTAGCAAACTCAGTTAAACTATCTTGGAACACATGTATGAGTAATAGCTCATTACTAGCAT
10868401 GAGCTATC
131 GAGCTATC
* *
10868409 ATTAATGAAAAATCGAGTCAAATCCTT-TCAAGATTGTATACGGGCCCTGTCTAACTAGAAGATC
1 ATTAATGAAAAATCGAGTCAAATCATTCT-AAGATTGTATACGGGCCCTGTCTAACCAGAAGATC
*
10868473 ATCTTGTAGCAAACTCAGTTAAACTATCTTGGAACACATGTATGAGTAATAGCTCATTACTAGCA
65 ATCTTCTAGCAAACTCAGTTAAACTATCTTGGAACACATGTATGAGTAATAGCTCATTACTAGCA
*
10868538 TGAGCTGTC
130 TGAGCTATC
10868547 ATT
1 ATT
10868550 TTACAATAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
137 1 0.01
138 131 0.99
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (138 bp):
ATTAATGAAAAATCGAGTCAAATCATTCTAAGATTGTATACGGGCCCTGTCTAACCAGAAGATCA
TCTTCTAGCAAACTCAGTTAAACTATCTTGGAACACATGTATGAGTAATAGCTCATTACTAGCAT
GAGCTATC
Found at i:10872731 original size:16 final size:16
Alignment explanation
Indices: 10872710--10872740 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
10872700 AGTTTGGTAG
10872710 AATTCATAAAAAATTA
1 AATTCATAAAAAATTA
10872726 AATTCATAAAAAATT
1 AATTCATAAAAAATT
10872741 CTCTAATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
AATTCATAAAAAATTA
Found at i:10872898 original size:3 final size:3
Alignment explanation
Indices: 10872887--10872917 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
10872877 AATATGTGAA
10872887 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10872918 CAATGATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:10872926 original size:3 final size:3
Alignment explanation
Indices: 10872920--10872951 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10872910 AATAATAACA
10872920 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
10872952 AATAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:10872997 original size:23 final size:22
Alignment explanation
Indices: 10872970--10873022 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
10872960 TAAGTAAAAT
* *
10872970 AAATGAAATCTAAAAATAAATGA
1 AAATGAAAT-AAAAAATAAAAGA
10872993 AAATGAAAATAAAAAATAAAAGA
1 AAATG-AAATAAAAAATAAAAGA
10873016 AAA-GAAA
1 AAATGAAA
10873023 AACCTACGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.11
22 1 0.04
23 19 0.70
24 4 0.15
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.15
Consensus pattern (22 bp):
AAATGAAATAAAAAATAAAAGA
Found at i:10873001 original size:16 final size:17
Alignment explanation
Indices: 10872965--10873005 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
10872955 AATAATAAGT
*
10872965 AAAATAAATGAAATCTA
1 AAAATAAATGAAATATA
*
10872982 AAAATAAATGAAA-ATG
1 AAAATAAATGAAATATA
10872998 AAAATAAA
1 AAAATAAA
10873006 AAATAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.20
Consensus pattern (17 bp):
AAAATAAATGAAATATA
Found at i:10873024 original size:23 final size:23
Alignment explanation
Indices: 10872981--10873023 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
10872971 AATGAAATCT
*
10872981 AAAAATAAATGAAAATGAAAATA
1 AAAAATAAAAGAAAATGAAAATA
10873004 AAAAATAAAAGAAAA-GAAAA
1 AAAAATAAAAGAAAATGAAAA
10873024 ACCTACGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (23 bp):
AAAAATAAAAGAAAATGAAAATA
Found at i:10873758 original size:3 final size:3
Alignment explanation
Indices: 10873750--10873780 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10873740 AAATAAACAA
10873750 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
10873781 CAATAACGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10875946 original size:12 final size:11
Alignment explanation
Indices: 10875918--10875952 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
10875908 GATAAATTTA
10875918 TTGGTATTTCT
1 TTGGTATTTCT
*
10875929 TTGGTATTTTT
1 TTGGTATTTCT
10875940 GTTGGTATTTCT
1 -TTGGTATTTCT
10875952 T
1 T
10875953 CGATGTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.09, C:0.06, G:0.20, T:0.66
Consensus pattern (11 bp):
TTGGTATTTCT
Found at i:10875961 original size:23 final size:23
Alignment explanation
Indices: 10875918--10875963 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
10875908 GATAAATTTA
* *
10875918 TTGGTATTTCTTTGGTATTTTTG
1 TTGGTATTTCTTCGATATTTTTG
*
10875941 TTGGTATTTCTTCGATGTTTTTG
1 TTGGTATTTCTTCGATATTTTTG
10875964 CCAGTAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.07, G:0.22, T:0.63
Consensus pattern (23 bp):
TTGGTATTTCTTCGATATTTTTG
Found at i:10876043 original size:23 final size:23
Alignment explanation
Indices: 10876017--10876084 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
10876007 ATAAATTTAC
10876017 TGGTATTTCTTTCATATTTTTGT
1 TGGTATTTCTTTCATATTTTTGT
** *
10876040 TGGTATTTCTTTGGTGTTTTTGT
1 TGGTATTTCTTTCATATTTTTGT
* * *
10876063 TGCTATTTATTTCCAGATTTTT
1 TGGTATTTCTTT-CATATTTTT
10876085 TTATGTGATT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 30 0.86
24 5 0.14
ACGTcount: A:0.12, C:0.09, G:0.16, T:0.63
Consensus pattern (23 bp):
TGGTATTTCTTTCATATTTTTGT
Found at i:10876748 original size:16 final size:17
Alignment explanation
Indices: 10876715--10876750 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
10876705 AATCTGAGAT
10876715 AATCTAATAATAAAAGC
1 AATCTAATAATAAAAGC
*
10876732 AATCTTATAAT-AAAGC
1 AATCTAATAATAAAAGC
10876748 AAT
1 AAT
10876751 TTGATGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.28
Consensus pattern (17 bp):
AATCTAATAATAAAAGC
Found at i:10877489 original size:12 final size:12
Alignment explanation
Indices: 10877455--10877517 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
10877445 GAAACATTTG
* *
10877455 TTGAAACTGGAA
1 TTGAAATTGGAT
* *
10877467 TGGAAAGTGGAT
1 TTGAAATTGGAT
* *
10877479 TTGAAGTTGGAG
1 TTGAAATTGGAT
* *
10877491 TTAAAACTGGAT
1 TTGAAATTGGAT
10877503 TTGAAATTGGAT
1 TTGAAATTGGAT
10877515 TTG
1 TTG
10877518 TTGAAGCTAG
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.33
Consensus pattern (12 bp):
TTGAAATTGGAT
Found at i:10877489 original size:24 final size:24
Alignment explanation
Indices: 10877455--10877513 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
10877445 GAAACATTTG
* * *
10877455 TTGAAACTGGAATGGAAAGTGGAT
1 TTGAAATTGGAATGAAAACTGGAT
* * *
10877479 TTGAAGTTGGAGTTAAAACTGGAT
1 TTGAAATTGGAATGAAAACTGGAT
10877503 TTGAAATTGGA
1 TTGAAATTGGA
10877514 TTTGTTGAAG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.36, C:0.03, G:0.31, T:0.31
Consensus pattern (24 bp):
TTGAAATTGGAATGAAAACTGGAT
Found at i:10880297 original size:42 final size:43
Alignment explanation
Indices: 10880225--10880316 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 43
10880215 TCACCTACAC
* * *
10880225 TTTCATTCCCTACTGCCTTATCTACATGTTGATTTTCTACC-T
1 TTTCATTCCCTACTGCATCAGCTACATGTTGATTTTCTACCAT
*
10880267 TTTCATTCCCTACTGCATCAGCTACGTGTTGATTTTCTACCAT
1 TTTCATTCCCTACTGCATCAGCTACATGTTGATTTTCTACCAT
10880310 TTT-ATTC
1 TTTCATTC
10880317 TTTACTACCT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 41 0.91
43 4 0.09
ACGTcount: A:0.17, C:0.27, G:0.09, T:0.47
Consensus pattern (43 bp):
TTTCATTCCCTACTGCATCAGCTACATGTTGATTTTCTACCAT
Found at i:10880917 original size:18 final size:18
Alignment explanation
Indices: 10880896--10880943 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 18
10880886 TGTTTTAATC
10880896 TTTTACTTTGTTATAAAA
1 TTTTACTTTGTTATAAAA
**
10880914 TTTT-C---GTTATAAGC
1 TTTTACTTTGTTATAAAA
10880928 TTTTACTTTGTTATAA
1 TTTTACTTTGTTATAA
10880944 CCATGTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
14 11 0.46
15 1 0.04
17 1 0.04
18 11 0.46
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.56
Consensus pattern (18 bp):
TTTTACTTTGTTATAAAA
Found at i:10880931 original size:32 final size:32
Alignment explanation
Indices: 10880866--10880943 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
10880856 TGCGTGTCCC
* * * * * *
10880866 TTACATTGTTATATATTTTTTGTTTTAATCTT
1 TTACTTTGTTATAAAATTTTCGTTATAAGCTT
10880898 TTACTTTGTTATAAAATTTTCGTTATAAGCTT
1 TTACTTTGTTATAAAATTTTCGTTATAAGCTT
10880930 TTACTTTGTTATAA
1 TTACTTTGTTATAA
10880944 CCATGTTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.59
Consensus pattern (32 bp):
TTACTTTGTTATAAAATTTTCGTTATAAGCTT
Found at i:10890510 original size:15 final size:14
Alignment explanation
Indices: 10890490--10890520 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
10890480 TTAAAATTTG
10890490 AATATTATTTTATTA
1 AATATTATTTT-TTA
10890505 AATATTATTTTTTA
1 AATATTATTTTTTA
10890519 AA
1 AA
10890521 AAAAATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
AATATTATTTTTTA
Found at i:10892319 original size:67 final size:67
Alignment explanation
Indices: 10892204--10892332 Score: 188
Period size: 67 Copynumber: 1.9 Consensus size: 67
10892194 GGAGGAAGAA
***
10892204 CAAAGAAATAAAGTCACACAACAACAATGGATATGTTTTTCTAATTTTAATACATTGCTAATGAG
1 CAAAGAAATAAAGTCACACAACAACAACAAATATGTTTTTCTAATTTTAATACATTGCTAATGAG
10892269 AG
66 AG
* * *
10892271 CAAAGAAATAAAGTCGCACAACAACAACAAATTTGCTTTTT-TATTTTTAATACATTGCTAAT
1 CAAAGAAATAAAGTCACACAACAACAACAAATATG-TTTTTCTAATTTTAATACATTGCTAAT
10892333 AAGATCTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 50 0.91
68 5 0.09
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.32
Consensus pattern (67 bp):
CAAAGAAATAAAGTCACACAACAACAACAAATATGTTTTTCTAATTTTAATACATTGCTAATGAG
AG
Found at i:10894772 original size:30 final size:30
Alignment explanation
Indices: 10894710--10894802 Score: 93
Period size: 30 Copynumber: 3.1 Consensus size: 30
10894700 TGAGTTAAAT
* * *
10894710 TGGGTTTTTGCATGTCATGAGCCTTACATA
1 TGGGTTTATGCATGTAATGAGCCTCACATA
**
10894740 TGGGTTTATGCATGTAATGAGCCTCATTTA
1 TGGGTTTATGCATGTAATGAGCCTCACATA
*
10894770 TGGGCTTTA--AATGTAAT-AGGCCTCACATA
1 TGGG-TTTATGCATGTAATGA-GCCTCACATA
10894799 TGGG
1 TGGG
10894803 CTATTGCATA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
28 1 0.02
29 19 0.36
30 29 0.55
31 4 0.08
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.37
Consensus pattern (30 bp):
TGGGTTTATGCATGTAATGAGCCTCACATA
Found at i:10898837 original size:125 final size:126
Alignment explanation
Indices: 10898652--10898884 Score: 387
Period size: 125 Copynumber: 1.9 Consensus size: 126
10898642 TGCCAAATGC
* * * * * *
10898652 TTTTGACCTTGAAGATGCTATTTTTGCCCTTAGAATTAGGTGCTTGGTTTTCCAGTTTCCATAAA
1 TTTTGACCTTAAAGATGCAATTTTTACCATGAGAAATAGGTGCTTGGTTTTCCAGTTTCCATAAA
10898717 TTAATTTATTAAAATCAAAATAACTATGATCAAATATATTGATGTTAATATTTATATGTGT
66 TTAATTTATTAAAATCAAAATAACTATGATCAAATATATTGATGTTAATATTTATATGTGT
*
10898778 TTTTGACCTTAAAGATGCAATTTTTACCATGA-AAATAGGTGCTTGGTTTTCTAGTTTCCATAAA
1 TTTTGACCTTAAAGATGCAATTTTTACCATGAGAAATAGGTGCTTGGTTTTCCAGTTTCCATAAA
*
10898842 TTAATTTATTAAAATCAATATAACTATGATCAAATATATTGAT
66 TTAATTTATTAAAATCAAAATAACTATGATCAAATATATTGAT
10898885 ATTGATACCT
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
125 72 0.73
126 27 0.27
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (126 bp):
TTTTGACCTTAAAGATGCAATTTTTACCATGAGAAATAGGTGCTTGGTTTTCCAGTTTCCATAAA
TTAATTTATTAAAATCAAAATAACTATGATCAAATATATTGATGTTAATATTTATATGTGT
Found at i:10900828 original size:22 final size:22
Alignment explanation
Indices: 10900801--10900852 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
10900791 AATACTAAGG
* *
10900801 AAAAAACATATAAATAAAA-TAA
1 AAAAAAAAT-TAAAAAAAATTAA
*
10900823 ATAAAAAATTAAAAAAAATTAA
1 AAAAAAAATTAAAAAAAATTAA
10900845 AAAAAAAA
1 AAAAAAAA
10900853 GTTCAAATGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (22 bp):
AAAAAAAATTAAAAAAAATTAA
Found at i:10900841 original size:17 final size:18
Alignment explanation
Indices: 10900815--10900848 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10900805 AACATATAAA
*
10900815 TAAAATAAA-TAAAAAAT
1 TAAAAAAAATTAAAAAAT
10900832 TAAAAAAAATTAAAAAA
1 TAAAAAAAATTAAAAAA
10900849 AAAAGTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAAAAAATTAAAAAAT
Found at i:10900847 original size:9 final size:10
Alignment explanation
Indices: 10900801--10900850 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
10900791 AATACTAAGG
*
10900801 AAAAAACATAT
1 AAAAAAAAT-T
* *
10900812 AAATAAAATA
1 AAAAAAAATT
10900822 AATAAAAAATT
1 AA-AAAAAATT
10900833 AAAAAAAATT
1 AAAAAAAATT
10900843 AAAAAAAA
1 AAAAAAAA
10900851 AAGTTCAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
10 18 0.55
11 15 0.45
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAAAAAATT
Found at i:10901585 original size:11 final size:12
Alignment explanation
Indices: 10901538--10901598 Score: 56
Period size: 13 Copynumber: 5.2 Consensus size: 12
10901528 AAATTAATTG
*
10901538 AAAAATCACATAT
1 AAAAATCA-AAAT
*
10901551 AAACATCAAAATT
1 AAAAATCAAAA-T
*
10901564 AAAAATAAAAAT
1 AAAAATCAAAAT
10901576 AAAAA-CAAAAT
1 AAAAATCAAAAT
10901587 -AAAAT-AAAAT
1 AAAAATCAAAAT
10901597 AA
1 AA
10901599 GGTCCATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
10 9 0.22
11 6 0.15
12 8 0.20
13 17 0.43
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAAATCAAAAT
Found at i:10901938 original size:42 final size:41
Alignment explanation
Indices: 10901843--10902097 Score: 235
Period size: 43 Copynumber: 6.0 Consensus size: 41
10901833 GTAAACAAAA
*
10901843 CTCCTCTAAACAGAGGCTCAAC-G-ACTTTGAGGAAAATAAATTG
1 CTCCTCTAAATAGAGG--CAACAGAACTTTGA--AAAATAAATTG
*
10901886 CTCCTCTAAATAGAGGCAATAGAACTTTGAAAAAGTAAATTG
1 CTCCTCTAAATAGAGGCAACAGAACTTTGAAAAA-TAAATTG
* * * *
10901928 CTCATCTAAATAAAGGCAACAGAACTTTAAAAAAATAAATTA
1 CTCCTCTAAATAGAGGCAACAGAACTTT-GAAAAATAAATTG
* * * *
10901970 CTTCTCTAAACAGAGGCAACAAAACTTTAGGAAAAATAAAATG
1 CTCCTCTAAATAGAGGCAACAGAACTTT--GAAAAATAAATTG
* * * *
10902013 TTCCTTTAAATAGAGGCAACCATAACTTTGGAAAAATAAAATG
1 CTCCTCTAAATAGAGGCAA-CAGAACTTT-GAAAAATAAATTG
* *
10902056 CTCCTCCAAATAGAGGCAACCACAACTTTAGGAAAAATAAAT
1 CTCCTCTAAATAGAGGCAA-CAGAACTTT--GAAAAATAAAT
10902098 CGTTTTTTGA
Statistics
Matches: 179, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
41 7 0.04
42 62 0.35
43 91 0.51
44 19 0.11
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (41 bp):
CTCCTCTAAATAGAGGCAACAGAACTTTGAAAAATAAATTG
Found at i:10902052 original size:86 final size:85
Alignment explanation
Indices: 10901866--10902096 Score: 259
Period size: 86 Copynumber: 2.7 Consensus size: 85
10901856 AGGCTCAACG
* * * *
10901866 ACTTTGAGGAAAATAAATTGCTCCTCTAAATAGAGGCAATAGAACTTT--GAAAAAGTAAATTGC
1 ACTTTG-GAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAAACTTTAGGAAAAA-TAAAATGC
10901929 TCATCTAAATAAAGGCAACAGA
64 TCATCTAAATAAAGGCAACAGA
** * * * *
10901951 ACTTTAAAAAAATAAATTACTTCTCTAAACAGAGGCAACAAAACTTTAGGAAAAATAAAATGTTC
1 ACTTTGGAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAAACTTTAGGAAAAATAAAATGCTC
* * * *
10902016 CTTTAAATAGAGGCAACCATA
66 ATCTAAATAAAGGCAA-CAGA
* * *
10902037 ACTTTGGAAAAATAAAATGCTCCTCCAAATAGAGGCAACCACAACTTTAGGAAAAATAAA
1 ACTTTGGAAAAATAAATTGCTCCTCTAAATAGAGGCAA-CAAAACTTTAGGAAAAATAAA
10902097 TCGTTTTTTG
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
84 34 0.28
85 26 0.22
86 40 0.33
87 20 0.17
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (85 bp):
ACTTTGGAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAAACTTTAGGAAAAATAAAATGCTC
ATCTAAATAAAGGCAACAGA
Found at i:10902501 original size:21 final size:22
Alignment explanation
Indices: 10902475--10902528 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
10902465 AACATAAAAC
10902475 TCAAAGACTCTTC-TTTGAAAT
1 TCAAAGACTCTTCATTTGAAAT
*
10902496 TCAAAGATTC-TCATTTGAAAT
1 TCAAAGACTCTTCATTTGAAAT
*
10902517 TCAAAGGCTCTT
1 TCAAAGACTCTT
10902529 ATCAAAAGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 25 0.89
22 1 0.04
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (22 bp):
TCAAAGACTCTTCATTTGAAAT
Found at i:10902875 original size:23 final size:23
Alignment explanation
Indices: 10902845--10902888 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
10902835 TTGGAATAAG
*
10902845 TTTCATCAAC-TGATCATCATTAT
1 TTTCATC-ACTTGATCACCATTAT
10902868 TTTCATCACTTGATCACCATT
1 TTTCATCACTTGATCACCATT
10902889 CATAGGCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.27, C:0.25, G:0.05, T:0.43
Consensus pattern (23 bp):
TTTCATCACTTGATCACCATTAT
Found at i:10903693 original size:1 final size:1
Alignment explanation
Indices: 10903689--10903725 Score: 56
Period size: 1 Copynumber: 37.0 Consensus size: 1
10903679 CATTTTTCTC
* *
10903689 TTTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10903726 ATTCTTTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.05, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Found at i:10903701 original size:15 final size:15
Alignment explanation
Indices: 10903681--10903730 Score: 70
Period size: 14 Copynumber: 3.5 Consensus size: 15
10903671 CTTATTTCCA
10903681 TTTTTCTC-TTTTTT
1 TTTTTCTCTTTTTTT
10903695 TTTTT-TCTTTTTTT
1 TTTTTCTCTTTTTTT
10903709 TTTTTCT-TTTTTTT
1 TTTTTCTCTTTTTTT
10903723 TTTATTCT
1 TTT-TTCT
10903731 TTCATTCCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 2 0.06
14 26 0.79
15 5 0.15
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTCTCTTTTTTT
Found at i:10903705 original size:12 final size:13
Alignment explanation
Indices: 10903681--10903725 Score: 81
Period size: 13 Copynumber: 3.5 Consensus size: 13
10903671 CTTATTTCCA
*
10903681 TTTTTCTCTTTTT
1 TTTTTTTCTTTTT
10903694 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
10903707 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
10903720 TTTTTT
1 TTTTTT
10903726 ATTCTTTCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:10903731 original size:15 final size:14
Alignment explanation
Indices: 10903681--10903732 Score: 79
Period size: 13 Copynumber: 3.6 Consensus size: 14
10903671 CTTATTTCCA
10903681 TTTTTCTCTTTTTTT
1 TTTTTCT-TTTTTTT
10903696 TTTTTC-TTTTTTT
1 TTTTTCTTTTTTTT
10903709 TTTTTCTTTTTTTT
1 TTTTTCTTTTTTTT
10903723 TTTATTCTTT
1 TTT-TTCTTT
10903733 CATTCCTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.37
14 10 0.29
15 12 0.34
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTCTTTTTTTT
Found at i:10908670 original size:65 final size:61
Alignment explanation
Indices: 10908532--10908707 Score: 147
Period size: 65 Copynumber: 2.8 Consensus size: 61
10908522 CAAAAATACT
* * * * ** * ** * *
10908532 TTGAATAACCCCATTTAATTTTTTGTAAGTGATTATTCAAGGTGTTTTCTGGCCAAAAACATC
1 TTGAATAATCCCATTCAA-TTTTTATAAGGGATTATTCAAGGTAATTT-TAGTTAGAAACACC
* *
10908595 TTTAATAAT-CCATTATAATTTTTAATTAAAGGGGATTATTCAAGGTAATTTTAGTTAGAAACAC
1 TTGAATAATCCCATT-CAATTTTT-A-T-AA-GGGATTATTCAAGGTAATTTTAGTTAGAAACAC
10908659 C
61 C
* *
10908660 TTGAATAATCCCATTCAATTTTTATAAGGGATTATTTAAGGTATTTTT
1 TTGAATAATCCCATTCAATTTTTATAAGGGATTATTCAAGGTAATTTT
10908708 TGACCAAAAA
Statistics
Matches: 92, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
61 19 0.21
62 12 0.13
63 11 0.12
64 2 0.02
65 26 0.28
66 22 0.24
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (61 bp):
TTGAATAATCCCATTCAATTTTTATAAGGGATTATTCAAGGTAATTTTAGTTAGAAACACC
Found at i:10908792 original size:60 final size:61
Alignment explanation
Indices: 10908714--10908853 Score: 160
Period size: 60 Copynumber: 2.3 Consensus size: 61
10908704 TTTTTGACCA
* * *
10908714 AAAACGCCTTCAATAATCCCCAAAAAAAT-GAGAAGGGATTATTGAAGGC-GTTTTTGGTAG
1 AAAACACCTTCAATAATCCCCAAAAAAATGGA-AAGAGATTATTGAAGGCAGTTTTTGCTAG
* * ** * *
10908774 AAAACACCTTGAACAATCCTTAAAAAAATGGAAAGAGATTATTTAAGGCATTTTTTGCTAG
1 AAAACACCTTCAATAATCCCCAAAAAAATGGAAAGAGATTATTGAAGGCAGTTTTTGCTAG
*
10908835 -AAACACCTTTAATAATCCC
1 AAAACACCTTCAATAATCCC
10908854 ATTCAATTTT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
60 55 0.83
61 11 0.17
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (61 bp):
AAAACACCTTCAATAATCCCCAAAAAAATGGAAAGAGATTATTGAAGGCAGTTTTTGCTAG
Found at i:10908851 original size:182 final size:181
Alignment explanation
Indices: 10908628--10909047 Score: 506
Period size: 182 Copynumber: 2.3 Consensus size: 181
10908618 AATTAAAGGG
* * *
10908628 GATTATTCAAGGTAA-TTTTAGTTAGAAACACCTTGAATAATCCCATTCAATTTTTATAAGGGAT
1 GATTATTAAAGG-AATTTTTTGCTAGAAACACCTTGAATAATCCCATTCAATTTTTATAAGGGAT
* ** * *
10908692 TATTTAAGGTATTTTTTGA-CCAAAAACGCCTTCAATAATCCCCAAAAAAATGAGAAGGGATTAT
65 TATTTAAGG-ATTTTCTGATAAAAAAACGCCTTCAATAATCCCAAAAAAAATG-GAAAGGATTAT
* * * **
10908756 TGAAGGCGTTTTTGG-TAGAAAACACCTTGAACAATCCTTAAAAAAA-TGGAAAGA
128 TCAAGGCGTTTTTGGCTAG-AAACACCTCGAAAAATCCCCAAAAAAATTGG-AAGA
* * *
10908810 GATTATTTAAGGCATTTTTTGCTAGAAACACCTTTAATAATCCCATTCAATTTTTTATAAGGGAT
1 GATTATTAAAGGAATTTTTTGCTAGAAACACCTTGAATAATCCCATTCAA-TTTTTATAAGGGAT
* * * *
10908875 TATTTAAGGGTTTTCTGATAAAAAAATGCCTTGAATAATCTCAAAAAAAATGGAAAGGATTATTC
65 TATTTAAGGATTTTCTGATAAAAAAACGCCTTCAATAATCCCAAAAAAAATGGAAAGGATTATTC
* ***
10908940 AAGGTGTTTTTGGCTAGAAATGTCTCGAAAAATCCCCAAAAAAATTGGAAGA
130 AAGGCGTTTTTGGCTAGAAACACCTCGAAAAATCCCCAAAAAAATTGGAAGA
* * * *
10908992 GATTATTAAAGGAATTTTTTGCCAAAAACACCTTGAATAATCTCTTTCAATTTTTA
1 GATTATTAAAGGAATTTTTTGCTAGAAACACCTTGAATAATCCCATTCAATTTTTA
10909048 ATTAGAAGGA
Statistics
Matches: 203, Mismatches: 30, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
181 7 0.03
182 140 0.69
183 56 0.28
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (181 bp):
GATTATTAAAGGAATTTTTTGCTAGAAACACCTTGAATAATCCCATTCAATTTTTATAAGGGATT
ATTTAAGGATTTTCTGATAAAAAAACGCCTTCAATAATCCCAAAAAAAATGGAAAGGATTATTCA
AGGCGTTTTTGGCTAGAAACACCTCGAAAAATCCCCAAAAAAATTGGAAGA
Found at i:10909537 original size:33 final size:34
Alignment explanation
Indices: 10909500--10909568 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
10909490 TTCTTGCATT
** * *
10909500 TTGGGTCAAAT-CCTAAGTTTTCTGTCTGATTTG
1 TTGGGTCAAATCCCTAAACTTCCTATCTGATTTG
10909533 TTGGGTCAAATCCCTAAACTTCCTATCTGATTTG
1 TTGGGTCAAATCCCTAAACTTCCTATCTGATTTG
10909567 TT
1 TT
10909569 ACATTTCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 11 0.35
34 20 0.65
ACGTcount: A:0.20, C:0.19, G:0.17, T:0.43
Consensus pattern (34 bp):
TTGGGTCAAATCCCTAAACTTCCTATCTGATTTG
Found at i:10914423 original size:14 final size:15
Alignment explanation
Indices: 10914404--10914434 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
10914394 TGAATGTGAC
10914404 ATTATTTAC-ATATT
1 ATTATTTACTATATT
10914418 ATTATTTACTATATT
1 ATTATTTACTATATT
10914433 AT
1 AT
10914435 GTCTTAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTATTTACTATATT
Found at i:10914535 original size:14 final size:15
Alignment explanation
Indices: 10914516--10914549 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
10914506 CGAATGTGAC
10914516 ATTATTTAC-ATATT
1 ATTATTTACTATATT
10914530 ATTATTTACTATATT
1 ATTATTTACTATATT
10914545 ATTAT
1 ATTAT
10914550 GTCTTAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTATTTACTATATT
Found at i:10919636 original size:357 final size:356
Alignment explanation
Indices: 10918930--10919821 Score: 1152
Period size: 357 Copynumber: 2.5 Consensus size: 356
10918920 TGAACATATT
* ** * *
10918930 ACCACACAAATTCTAACACTATTATTGAAGGTGTATATCCAAAAAAGATG-CTTTAATAATTCTT
1 ACCACACAAATTGTAACACTATTATTGAAGGTGTATATTTAAAATAGATGCCTTTAATAATTCCT
* * * **
10918994 ATCATAGTTTGTAGT-TAATTACTAAAGGTGGTTGCAAAAAACAATGCCTTCAATAATTACCTTA
66 ATCACAGTTTGTA-TATAATTACTAAAGGCGGTTGCAGAAAACAA-GCCTTCAATAATTTTCTTA
* * * **
10919058 AAAAA-ATTTTCTCAGATTATTAAAGGCATCTTTTATTATGACACGCCTTTAATATACCATGATG
129 AAAAACATTTT-TCAGATTATTAAAGGCATCTTTTATTATAAAACGCCTTCAATATACCACAATG
* * * * *
10919122 GTAATGGAAGGTGTTTATTAGAAAATGCGCCTTCAATATACTTTTAAACTTAGTAATCCATTACT
193 GTAATGAAAGGCGTTTATTAGAAAAAGCGCCTTCAATATACCTTTAAACTTACTAATCCATTACT
* * *
10919187 GAAAGTATTTATTAATAACAGACGCTTTCAAAATTTTCTCACTTAATATTTTGAGAATTATTAAA
258 GAAAGAATTTATTAATAACAGACGCTTTCAAAATTTTCTCACTAAATATTTTAAGAATTATTAAA
* *
10919252 GGCGTATTCTACTGTAAAATACCTTCTATATACT
323 AGCGTATTCTACTGTAAAATACCTTCTATATACC
* ** * *
10919286 GCCACACAAATTGTAACACTATTATTGAAGGCATATATTTAAGATAGACGCCTTTAATAATTCCT
1 ACCACACAAATTGTAACACTATTATTGAAGGTGTATATTTAAAATAGATGCCTTTAATAATTCCT
* * * *
10919351 ATCACAGTTTATATATAATTACTAAAGGCAGTTTCAGAAAACAACGCCTTTAATAATTTTCTTAA
66 ATCACAGTTTGTATATAATTACTAAAGGCGGTTGCAGAAAACAA-GCCTTCAATAATTTTCTTAA
* *
10919416 AAAACATTTTTCAAATTATTAAAGGCATATTTTATTATAAAACGCCTTCAATATACCACAATGGT
130 AAAACATTTTTCAGATTATTAAAGGCATCTTTTATTATAAAACGCCTTCAATATACCACAATGGT
*
10919481 AATGAAAGGCGTTTATTAGAAAAAGATGCCTTCAATATACCTTTAAACTTACTAATCCATTACTG
195 AATGAAAGGCGTTTATTAGAAAAAG-CGCCTTCAATATACCTTTAAACTTACTAATCCATTACTG
* * *
10919546 AAGGAATTTGTTAATAACAATAC-CTTT-AAAATTTTCTCACTAAATATTTTAAGAATTATTAAA
259 AAAGAATTTATTAATAAC-AGACGCTTTCAAAATTTTCTCACTAAATATTTTAAGAATTATTAAA
* * *
10919609 AGCGTCTTCTATTGTAAAATGCCTTCTATATACC
323 AGCGTATTCTACTGTAAAATACCTTCTATATACC
* * *
10919643 ACCACACAAATTGTAACACTGTTATTAAAGGTGTATATTTAAAATAGATGCCTTTAACAATTCCT
1 ACCACACAAATTGTAACACTATTATTGAAGGTGTATATTTAAAATAGATGCCTTTAATAATTCCT
* * * *
10919708 ATCACAGTTTGTATATAATCACTGAAGGCGGTTGCAG-ATA-AAGCCTTCAATAA-TTTCTCAAA
66 ATCACAGTTTGTATATAATTACTAAAGGCGGTTGCAGAAAACAAGCCTTCAATAATTTTCTTAAA
* * * * * * * *
10919770 AAACAATTTCCTGGTTATTAAAGCCGTCTTTAATTATAAAATGCCTTCAATA
131 AAACATTTTTCAGATTATTAAAGGCATCTTTTATTATAAAACGCCTTCAATA
10919822 ATTTGTTATA
Statistics
Matches: 461, Mismatches: 70, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
353 50 0.11
354 10 0.02
355 2 0.00
356 44 0.10
357 292 0.63
358 60 0.13
359 3 0.01
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (356 bp):
ACCACACAAATTGTAACACTATTATTGAAGGTGTATATTTAAAATAGATGCCTTTAATAATTCCT
ATCACAGTTTGTATATAATTACTAAAGGCGGTTGCAGAAAACAAGCCTTCAATAATTTTCTTAAA
AAACATTTTTCAGATTATTAAAGGCATCTTTTATTATAAAACGCCTTCAATATACCACAATGGTA
ATGAAAGGCGTTTATTAGAAAAAGCGCCTTCAATATACCTTTAAACTTACTAATCCATTACTGAA
AGAATTTATTAATAACAGACGCTTTCAAAATTTTCTCACTAAATATTTTAAGAATTATTAAAAGC
GTATTCTACTGTAAAATACCTTCTATATACC
Found at i:10922920 original size:21 final size:21
Alignment explanation
Indices: 10922878--10922920 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10922868 GCAACAAATT
***
10922878 AATGACCAAGAGCAATGCCTC
1 AATGACCAAGAGCAAAAACTC
*
10922899 AATGACCAATAGCAAAAACTC
1 AATGACCAAGAGCAAAAACTC
10922920 A
1 A
10922921 CAGCTTTGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.26, G:0.14, T:0.14
Consensus pattern (21 bp):
AATGACCAAGAGCAAAAACTC
Found at i:10932943 original size:2 final size:2
Alignment explanation
Indices: 10932936--10932966 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
10932926 GTTTCTTTAA
10932936 AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10932967 TCAATGCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:10940232 original size:2 final size:2
Alignment explanation
Indices: 10940220--10940261 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
10940210 TCTTTTTGCC
10940220 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10940261 A
1 A
10940262 CGAATTGAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10941441 original size:20 final size:19
Alignment explanation
Indices: 10941413--10941451 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
10941403 TTATTCAAGC
*
10941413 TTTTTTTATTTTAATATATA
1 TTTTATTATTTTAAT-TATA
10941433 TTTTATTATTTTAATTATA
1 TTTTATTATTTTAATTATA
10941452 AATTACAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTATTATTTTAATTATA
Found at i:10941526 original size:39 final size:39
Alignment explanation
Indices: 10941472--10941554 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
10941462 TTACCCTTAA
10941472 AATCTAAATACTTAAAACTAAAGCCCTAAAATCTCTTTC
1 AATCTAAATACTTAAAACTAAAGCCCTAAAATCTCTTTC
*
10941511 AATCTAAATATTTAAAACTAAAGCCCTAAAATCTCTTTC
1 AATCTAAATACTTAAAACTAAAGCCCTAAAATCTCTTTC
10941550 AATCT
1 AATCT
10941555 CATGACTCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (39 bp):
AATCTAAATACTTAAAACTAAAGCCCTAAAATCTCTTTC
Found at i:10943758 original size:13 final size:13
Alignment explanation
Indices: 10943740--10943764 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10943730 AGCATGTATG
10943740 TGAAAATTTTAAA
1 TGAAAATTTTAAA
10943753 TGAAAATTTTAA
1 TGAAAATTTTAA
10943765 TAAAAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
TGAAAATTTTAAA
Found at i:10946589 original size:21 final size:20
Alignment explanation
Indices: 10946543--10946590 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
10946533 AGGTATGAAA
10946543 TTTTAGAAAAAGAAAATTTTG
1 TTTT-GAAAAAGAAAATTTTG
*
10946564 ATTTGAAAAAG-AAATTTGATG
1 TTTTGAAAAAGAAAATTT--TG
10946585 TTTTGA
1 TTTTGA
10946591 TGAATGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 6 0.26
20 7 0.30
21 10 0.43
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (20 bp):
TTTTGAAAAAGAAAATTTTG
Found at i:10949166 original size:27 final size:27
Alignment explanation
Indices: 10949128--10949183 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
10949118 AAATATATAT
*
10949128 TTAGATACTTGCATATGTTAGATTAAG
1 TTAGATACTTGCATATGTTACATTAAG
10949155 TTAGATACTTGCATATGTTACATTAAG
1 TTAGATACTTGCATATGTTACATTAAG
10949182 TT
1 TT
10949184 TATTGCTATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (27 bp):
TTAGATACTTGCATATGTTACATTAAG
Found at i:10961390 original size:23 final size:23
Alignment explanation
Indices: 10961364--10961426 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
10961354 AGGGTTCAGG
*
10961364 GTTTTAAGTTTT-GAGGTTTTAAA
1 GTTTTAAGTTTTAG-GGTTTGAAA
*
10961387 GTTTTGAGTTTTAGGGTTTGAAA
1 GTTTTAAGTTTTAGGGTTTGAAA
*
10961410 -TTTAAAG-TTTAGGGTTT
1 GTTTTAAGTTTTAGGGTTT
10961427 CAATTTTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 10 0.29
22 5 0.14
23 19 0.54
24 1 0.03
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (23 bp):
GTTTTAAGTTTTAGGGTTTGAAA
Found at i:10961405 original size:15 final size:16
Alignment explanation
Indices: 10961363--10961399 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
10961353 TAGGGTTCAG
10961363 GGTTTT-AAGTTTTGA
1 GGTTTTAAAGTTTTGA
10961378 GGTTTTAAAGTTTTGA
1 GGTTTTAAAGTTTTGA
10961394 -GTTTTA
1 GGTTTTA
10961400 GGGTTTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (16 bp):
GGTTTTAAAGTTTTGA
Found at i:10961659 original size:28 final size:27
Alignment explanation
Indices: 10961572--10961659 Score: 72
Period size: 28 Copynumber: 3.1 Consensus size: 27
10961562 GGTTTTAGGG
*
10961572 TTTT-GATTTTAAAGTTTTGGGTTTAAGA
1 TTTTGGATTTTAAGGTTTT-GGTTT-AGA
* * *
10961600 TTTTGGGTTTTAAGG-TTTGCTGTTAGGG
1 TTTTGGATTTTAAGGTTTTGGT-TTA-GA
*
10961628 TTTTGGATTTTAAGGTTTATGGTTTTGA
1 TTTTGGATTTTAAGGTTT-TGGTTTAGA
10961656 TTTT
1 TTTT
10961660 TTTTGAAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
27 3 0.06
28 29 0.62
29 12 0.26
30 3 0.06
ACGTcount: A:0.17, C:0.01, G:0.26, T:0.56
Consensus pattern (27 bp):
TTTTGGATTTTAAGGTTTTGGTTTAGA
Found at i:10961747 original size:24 final size:24
Alignment explanation
Indices: 10961684--10961747 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
10961674 GTTTCGAGGG
*
10961684 TTTT-GGG-TTTGAAA-ATTTGGA
1 TTTTAGGGTTTTGAAATTTTTGGA
10961705 TTTTAGGGATTTTTG--ATTTTTGGA
1 TTTTAGGG--TTTTGAAATTTTTGGA
10961729 TTTTAGGGTTTTGAAATTT
1 TTTTAGGGTTTTGAAATTT
10961748 AGGGTTTAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
21 4 0.11
22 8 0.23
23 1 0.03
24 18 0.51
25 4 0.11
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (24 bp):
TTTTAGGGTTTTGAAATTTTTGGA
Done.