Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 56 of 129
Found at i:10961795 original size:30 final size:30
Alignment explanation
Indices: 10961759--10961891 Score: 137
Period size: 30 Copynumber: 4.5 Consensus size: 30
10961749 GGGTTTAGGC
* * *
10961759 TTGATTTTAGGGTTTAAAAGGTTTAGGGTT
1 TTGATTTTAGAGTTTAAAGGGTTTAAGGTT
* *
10961789 TTGATTTTAG-GATTT--GGGGTTTAAGATT
1 TTGATTTTAGAG-TTTAAAGGGTTTAAGGTT
* *
10961817 TTGATTTTAGAGTTTAGAGGGTTTAGGGTT
1 TTGATTTTAGAGTTTAAAGGGTTTAAGGTT
* *
10961847 TTGATTTTAAAATTTAAAGGGTTTAAGGTT
1 TTGATTTTAGAGTTTAAAGGGTTTAAGGTT
**
10961877 TCAATTTTAGAGTTT
1 TTGATTTTAGAGTTT
10961892 TAATTCTAGG
Statistics
Matches: 84, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
28 22 0.26
29 2 0.02
30 60 0.71
ACGTcount: A:0.25, C:0.01, G:0.26, T:0.48
Consensus pattern (30 bp):
TTGATTTTAGAGTTTAAAGGGTTTAAGGTT
Found at i:10961799 original size:14 final size:14
Alignment explanation
Indices: 10961780--10961855 Score: 53
Period size: 14 Copynumber: 5.3 Consensus size: 14
10961770 GTTTAAAAGG
10961780 TTTAGGGTTTTGAT
1 TTTAGGGTTTTGAT
* * **
10961794 TTTAGGATTTGGGG
1 TTTAGGGTTTTGAT
* *
10961808 TTTAAGATTTTGAT
1 TTTAGGGTTTTGAT
* * *
10961822 TTTAGAGTTTAGAGGG
1 TTTAGGGTTTTGA--T
10961838 TTTAGGGTTTTGAT
1 TTTAGGGTTTTGAT
10961852 TTTA
1 TTTA
10961856 AAATTTAAAG
Statistics
Matches: 44, Mismatches: 16, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
14 33 0.75
16 11 0.25
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTTGAT
Found at i:10961886 original size:44 final size:44
Alignment explanation
Indices: 10961838--10961921 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
10961828 GTTTAGAGGG
* * *
10961838 TTTAGGGTTTTGATTTTAAAATTTAAAGGGTTTAAGGTTTCAAT
1 TTTAGAGTTTTAATTCTAAAATTTAAAGGGTTTAAGGTTTCAAT
***
10961882 TTTAGAGTTTTAATTCTAGGGTTTAAAGGGTTTAAGGTTT
1 TTTAGAGTTTTAATTCTAAAATTTAAAGGGTTTAAGGTTT
10961922 AAACAAATTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.27, C:0.02, G:0.23, T:0.48
Consensus pattern (44 bp):
TTTAGAGTTTTAATTCTAAAATTTAAAGGGTTTAAGGTTTCAAT
Found at i:10962046 original size:3 final size:3
Alignment explanation
Indices: 10962034--10962105 Score: 76
Period size: 3 Copynumber: 23.3 Consensus size: 3
10962024 TTTTCTCTTT
* *
10962034 TTA TTAA TTA TTA ATA TTA -AA TTA TTAA CTT- TTA ATTA TTA TTA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TT-A -TTA TTA -TTA TTA TTA TTA
10962081 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
10962106 GCATTGTTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
2 3 0.05
3 47 0.80
4 7 0.12
5 2 0.03
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:10962717 original size:26 final size:26
Alignment explanation
Indices: 10962681--10962733 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10962671 CTTATTAAAA
10962681 TGGTATCATGTTGGCTTTTGGTAGTT
1 TGGTATCATGTTGGCTTTTGGTAGTT
10962707 TGGTATCATGTTGGCTTTTGGTAGTT
1 TGGTATCATGTTGGCTTTTGGTAGTT
10962733 T
1 T
10962734 CTATAAATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.11, C:0.08, G:0.30, T:0.51
Consensus pattern (26 bp):
TGGTATCATGTTGGCTTTTGGTAGTT
Found at i:10964038 original size:18 final size:17
Alignment explanation
Indices: 10963998--10964056 Score: 64
Period size: 18 Copynumber: 3.4 Consensus size: 17
10963988 TTTAAAACAT
***
10963998 TTTTTTTGTATTTTTTT
1 TTTTTTTGTATTTTGGA
10964015 TGTTTTTTGTATTTTAGGA
1 T-TTTTTTGTATTTT-GGA
*
10964034 TTTTTTTTTATTTTGGA
1 TTTTTTTGTATTTTGGA
10964051 TTTTTT
1 TTTTTT
10964057 ATTCAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
17 10 0.28
18 25 0.69
19 1 0.03
ACGTcount: A:0.10, C:0.00, G:0.12, T:0.78
Consensus pattern (17 bp):
TTTTTTTGTATTTTGGA
Found at i:10964227 original size:22 final size:22
Alignment explanation
Indices: 10964209--10964254 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
10964199 GGACTTAGAT
*
10964209 ATTATGCTCGGAGGTCTTAAAA
1 ATTATGATCGGAGGTCTTAAAA
*
10964231 ATTTTGATCGGAGGTCTTAAAA
1 ATTATGATCGGAGGTCTTAAAA
10964253 AT
1 AT
10964255 CTTAACATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.35
Consensus pattern (22 bp):
ATTATGATCGGAGGTCTTAAAA
Found at i:10964612 original size:84 final size:83
Alignment explanation
Indices: 10964373--10964615 Score: 265
Period size: 84 Copynumber: 2.9 Consensus size: 83
10964363 CCCGAAGAAC
* * * * * * * *
10964373 TTAAAAGTCTCAACATCTTTAAGTGCTCCTCACAA-TAGAGGTGTTGAGACTTTAAAAATTTAAA
1 TTAAAAATCTCAAAATCTTCAAATGCTCCTCATAATTAGAGGAGTTAAAACTTTAAAAATTTAAA
* * *
10964437 ATGTTTTCCCATGAGGTT
66 ATGTTTTGCCTTGAGGTA
* * * * * *
10964455 TTAAAAATCTCAAAATCTTCGAATACTCTTAATACATTAAAGGAG-TAAAAGCTTTAAAAAATTA
1 TTAAAAATCTCAAAATCTTCAAATGCTCCTCATA-ATTAGAGGAGTTAAAA-CTTTAAAAATTTA
10964519 AAATGTTTTGCCTTGAGGTA
64 AAATGTTTTGCCTTGAGGTA
* *
10964539 TTAAAAATCTCAAAATCTTCAAATGCTCCTCATATATTAGAGGCGTTAAAACTTTTAAAATTTAA
1 TTAAAAATCTCAAAATCTTCAAATGCTCCTCATA-ATTAGAGGAGTTAAAACTTTAAAAATTTAA
*
10964604 AATATTTTGCCT
65 AATGTTTTGCCT
10964616 AAAGGTCTTA
Statistics
Matches: 130, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
82 25 0.19
83 4 0.03
84 96 0.74
85 5 0.04
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (83 bp):
TTAAAAATCTCAAAATCTTCAAATGCTCCTCATAATTAGAGGAGTTAAAACTTTAAAAATTTAAA
ATGTTTTGCCTTGAGGTA
Found at i:10965401 original size:23 final size:23
Alignment explanation
Indices: 10965356--10965404 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
10965346 TATTATAGTA
*
10965356 TATTATAGTACACTACAATATAT
1 TATTATAGTACACTACAACATAT
* * *
10965379 TATTATAGTATAGTATAACATAT
1 TATTATAGTACACTACAACATAT
10965402 TAT
1 TAT
10965405 ATTTATATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (23 bp):
TATTATAGTACACTACAACATAT
Found at i:10965488 original size:3 final size:3
Alignment explanation
Indices: 10965480--10965551 Score: 76
Period size: 3 Copynumber: 24.3 Consensus size: 3
10965470 TTTATTTTGC
* * * * *
10965480 TAT TAT TAT TAT TAT TAT TGT TAC T-T TA- TAG TAT AAT ATAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
10965524 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10965552 TCTTTCCTCC
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
2 3 0.05
3 53 0.93
4 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:10966334 original size:13 final size:12
Alignment explanation
Indices: 10966318--10966395 Score: 52
Period size: 13 Copynumber: 6.2 Consensus size: 12
10966308 CCCTTTTCCA
*
10966318 TTTTCATTTTAT
1 TTTTTATTTTAT
*
10966330 TTTTTGATATTAT
1 TTTTT-ATTTTAT
*
10966343 TTTTTATTTCAT
1 TTTTTATTTTAT
10966355 TATTTTAAGTTTTTAT
1 T-TTTT-A--TTTTAT
*
10966371 TTTATTTTTTTA-
1 TTT-TTATTTTAT
10966383 TTTTTA-TTTAT
1 TTTTTATTTTAT
10966394 TT
1 TT
10966396 GCATTTAGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
10 4 0.08
11 4 0.08
12 13 0.25
13 20 0.38
14 1 0.02
15 2 0.04
16 8 0.15
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:10966369 original size:21 final size:19
Alignment explanation
Indices: 10966343--10966395 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
10966333 TTGATATTAT
10966343 TTTTTATTTCATTATTTTAA
1 TTTTTATTTCATT-TTTTAA
* *
10966363 GTTTTTATTTTATTTTTTTA
1 -TTTTTATTTCATTTTTTAA
10966383 TTTTTATTT-ATTT
1 TTTTTATTTCATTT
10966396 GCATTTAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 4 0.13
19 9 0.30
20 5 0.17
21 12 0.40
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTATTTCATTTTTTAA
Found at i:10972077 original size:121 final size:120
Alignment explanation
Indices: 10971884--10972448 Score: 454
Period size: 121 Copynumber: 4.7 Consensus size: 120
10971874 CTCAGTCTGG
* * * * ** * * * * *
10971884 ATCATTTTTTTGACTTATGATTTTAACTTGATCATTTATCTTCAACCTCAACTTGGTCTTGGTCA
1 ATCATTTTTTTGACTCACGATTTCATCCCGATCATTCATCTTCGACCTCGAC-TGGTCCTAGTCA
* * ** * * * *** * *
10971949 TTTTATCTTTTAGACTTATAGTTTTGTCTTAGTCGTTTGATCTCAACTTAGTCCAT
65 TTTTATCTTTTAGACTCACAGTTTCATCTCAATCATCCAATCTCGACTCAGTCCAT
*
10972005 ATCATTTTTTTGACTCACGATTTCATCCCGGTCATTCATCTTCGACCTCGACTGGATCCTAGTCA
1 ATCATTTTTTTGACTCACGATTTCATCCCGATCATTCATCTTCGACCTCGACTGG-TCCTAGTCA
** * *** * *
10972070 TTTTATCTTTTAGACTCATGGTTTCATCCCAATCATTTGATCTCGACTCAGTTCAG
65 TTTTATCTTTTAGACTCACAGTTTCATCTCAATCATCCAATCTCGACTCAGTCCAT
* * * * * **
10972126 ATCATTTTTTTAACTCACGATTTTATCCCAATCATTCATCCTCGATCTCGACTCAATCCTAGTCA
1 ATCATTTTTTTGACTCACGATTTCATCCCGATCATTCATCTTCGACCTCGACT-GGTCCTAGTCA
* * * * *
10972191 TTTTATCCTTTAGACTCACAGTTTCATCTCAGTTATCCAATCTC-AGTTCAATCCAT
65 TTTTATCTTTTAGACTCACAGTTTCATCTCAATCATCCAATCTCGA-CTCAGTCCAT
* * * * * * *
10972247 ATCATTTTTTT-ACTTACGATTTCATCACC-ATCATTTATCTTTGACCTCAACTAGGTCTTGGTT
1 ATCATTTTTTTGACTCACGATTTCATC-CCGATCATTCATCTTCGACCTCGACT-GGTCCTAGTC
** * * *
10972310 GCTTTATCTTTTGGGCTCACAGTTTCATCTCAATCATCCAATCTCGACTCAGTCCAA
64 ATTTTATCTTTTAGACTCACAGTTTCATCTCAATCATCCAATCTCGACTCAGTCCAT
* * * * *
10972367 ATCATTTTTTTGACTTATGGTTTCATCCCGGTCATTCATCTTTGACCTCGACCTGGTCCT-GATC
1 ATCATTTTTTTGACTCACGATTTCATCCCGATCATTCATCTTCGACCTCGA-CTGGTCCTAG-TC
** *
10972431 GCTTTATCTTTTAAACTC
64 ATTTTATCTTTTAGACTC
10972449 GCGATTTTGT
Statistics
Matches: 357, Mismatches: 78, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
120 99 0.28
121 256 0.72
122 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.11, T:0.43
Consensus pattern (120 bp):
ATCATTTTTTTGACTCACGATTTCATCCCGATCATTCATCTTCGACCTCGACTGGTCCTAGTCAT
TTTATCTTTTAGACTCACAGTTTCATCTCAATCATCCAATCTCGACTCAGTCCAT
Found at i:10972570 original size:37 final size:37
Alignment explanation
Indices: 10972485--10972581 Score: 115
Period size: 37 Copynumber: 2.6 Consensus size: 37
10972475 CAGCTCAATT
* *
10972485 TAGATCATTTT-TCTAATTTTTTGATCTCGGCTTAGCC
1 TAGATCATTTTCT-TAACTTTTGGATCTCGGCTTAGCC
* * *
10972522 TATATCATTTTCTTAACTTTTGGATCTTGGCTTAGTC
1 TAGATCATTTTCTTAACTTTTGGATCTCGGCTTAGCC
*
10972559 TAGATCATTTTCTTGACTATTTG
1 TAGATCATTTTCTTAACT-TTTG
10972582 ATTTTGATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (37 bp):
TAGATCATTTTCTTAACTTTTGGATCTCGGCTTAGCC
Found at i:10972784 original size:12 final size:12
Alignment explanation
Indices: 10972759--10972799 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
10972749 GATTTCATTT
* *
10972759 TTATTTTTAGTA
1 TTATTGTTACTA
*
10972771 TTATTGTTATTA
1 TTATTGTTACTA
10972783 TTATTGTTACTA
1 TTATTGTTACTA
10972795 TTATT
1 TTATT
10972800 AAATTATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.66
Consensus pattern (12 bp):
TTATTGTTACTA
Found at i:10972857 original size:23 final size:23
Alignment explanation
Indices: 10972802--10972923 Score: 116
Period size: 23 Copynumber: 5.6 Consensus size: 23
10972792 CTATTATTAA
10972802 ATTATTATAGTATAGTATAG--T
1 ATTATTATAGTATAGTATAGTAT
*
10972823 A-TAGTATAGTATAGTATAGTAT
1 ATTATTATAGTATAGTATAGTAT
*
10972845 ATTATTATAGTATAGTATAGCAT
1 ATTATTATAGTATAGTATAGTAT
* *
10972868 ATTA-TAT-TTATATTATA-T-T
1 ATTATTATAGTATAGTATAGTAT
* **
10972887 ATTATTAT-GATATATTAGGGTAT
1 ATTATTATAG-TATAGTATAGTAT
10972910 ATTATTATAGTATA
1 ATTATTATAGTATA
10972924 TTGTTATTTC
Statistics
Matches: 84, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
19 5 0.06
20 20 0.24
21 16 0.19
22 6 0.07
23 36 0.43
24 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.48
Consensus pattern (23 bp):
ATTATTATAGTATAGTATAGTAT
Found at i:10972884 original size:5 final size:5
Alignment explanation
Indices: 10972807--10972864 Score: 93
Period size: 5 Copynumber: 12.0 Consensus size: 5
10972797 ATTAAATTAT
*
10972807 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATA- T-TAT TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
10972855 TATAG TATAG
1 TATAG TATAG
10972865 CATATTATAT
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
3 2 0.04
4 2 0.04
5 46 0.92
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (5 bp):
TATAG
Found at i:10972924 original size:23 final size:23
Alignment explanation
Indices: 10972769--10972925 Score: 111
Period size: 23 Copynumber: 7.2 Consensus size: 23
10972759 TTATTTTTAG
* *
10972769 TATTATTGT-TATTATTATTGTTA
1 TATTATAGTATATTATTATAG-TA
*
10972792 CTATTAT--TAAATTATTATAGTA
1 -TATTATAGTATATTATTATAGTA
* *
10972814 TAGTATAG--TA-TAGTATAGTA
1 TATTATAGTATATTATTATAGTA
*
10972834 TAGTATAGTATATTATTATAGTA
1 TATTATAGTATATTATTATAGTA
* * *
10972857 TAGTATAGCATATTA-TAT-TTA
1 TATTATAGTATATTATTATAGTA
10972878 TATTATA-T-TATTATTAT-GATA
1 TATTATAGTATATTATTATAG-TA
**
10972899 TATTAGGGTATATTATTATAGTA
1 TATTATAGTATATTATTATAGTA
10972922 TATT
1 TATT
10972926 GTTATTTCTA
Statistics
Matches: 109, Mismatches: 13, Indels: 23
0.75 0.09 0.16
Matches are distributed among these distances:
19 5 0.05
20 20 0.18
21 21 0.19
22 9 0.08
23 47 0.43
24 7 0.06
ACGTcount: A:0.36, C:0.01, G:0.11, T:0.52
Consensus pattern (23 bp):
TATTATAGTATATTATTATAGTA
Found at i:10972925 original size:10 final size:10
Alignment explanation
Indices: 10972804--10972914 Score: 80
Period size: 10 Copynumber: 10.6 Consensus size: 10
10972794 ATTATTAAAT
10972804 TATTATAGTA
1 TATTATAGTA
*
10972814 TAGTATAGTA
1 TATTATAGTA
*
10972824 TAGTATAGTA
1 TATTATAGTA
*
10972834 TAGTATAGTATA
1 TATTATAG--TA
10972846 TTATTATAGTA
1 -TATTATAGTA
* *
10972857 TAGTATAGCA
1 TATTATAGTA
*
10972867 TATTATATTTA
1 TATTATA-GTA
*
10972878 TATTATATTA
1 TATTATAGTA
10972888 TTATTAT-GATA
1 -TATTATAG-TA
**
10972899 TATTAGGGTA
1 TATTATAGTA
10972909 TATTAT
1 TATTAT
10972915 TATAGTATAT
Statistics
Matches: 84, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
10 56 0.67
11 19 0.23
12 2 0.02
13 7 0.08
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.49
Consensus pattern (10 bp):
TATTATAGTA
Found at i:10972991 original size:3 final size:3
Alignment explanation
Indices: 10972983--10973013 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10972973 TAGTATAATA
10972983 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
10973014 TCAAGCCTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TAC
Found at i:10973625 original size:13 final size:13
Alignment explanation
Indices: 10973609--10973681 Score: 65
Period size: 13 Copynumber: 5.2 Consensus size: 13
10973599 TCCTTTTCCA
*
10973609 TTTTCATTTTATT
1 TTTTGATTTTATT
10973622 TTTTGATTTTATT
1 TTTTGATTTTATT
*
10973635 TTTTGATTTCATT
1 TTTTGATTTTATT
*
10973648 ATTTTAAGTTTTTAGTT
1 -TTTT--GATTTTA-TT
*
10973665 TATTTTATTTTATT
1 T-TTTGATTTTATT
10973679 TTT
1 TTT
10973682 ATTTATTTGC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
13 26 0.53
14 7 0.14
15 5 0.10
16 6 0.12
17 5 0.10
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTTGATTTTATT
Found at i:10983340 original size:28 final size:28
Alignment explanation
Indices: 10983308--10983377 Score: 140
Period size: 28 Copynumber: 2.5 Consensus size: 28
10983298 TAGGGTTTCA
10983308 ATTTTAAGGTTTGGGGTTCAAGGTTTTG
1 ATTTTAAGGTTTGGGGTTCAAGGTTTTG
10983336 ATTTTAAGGTTTGGGGTTCAAGGTTTTG
1 ATTTTAAGGTTTGGGGTTCAAGGTTTTG
10983364 ATTTTAAGGTTTGG
1 ATTTTAAGGTTTGG
10983378 AAGGTCTATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.19, C:0.03, G:0.31, T:0.47
Consensus pattern (28 bp):
ATTTTAAGGTTTGGGGTTCAAGGTTTTG
Found at i:10983372 original size:14 final size:14
Alignment explanation
Indices: 10983290--10983375 Score: 73
Period size: 14 Copynumber: 6.1 Consensus size: 14
10983280 GGGTTTAGGG
*
10983290 TTTGATTTTAGGGT
1 TTTGATTTTAAGGT
**
10983304 TTCAATTTTAAGGT
1 TTTGATTTTAAGGT
* ** *
10983318 TTGGGGTTCAAGGT
1 TTTGATTTTAAGGT
10983332 TTTGATTTTAAGGT
1 TTTGATTTTAAGGT
* ** *
10983346 TTGGGGTTCAAGGT
1 TTTGATTTTAAGGT
10983360 TTTGATTTTAAGGT
1 TTTGATTTTAAGGT
10983374 TT
1 TT
10983376 GGAAGGTCTA
Statistics
Matches: 52, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
14 52 1.00
ACGTcount: A:0.19, C:0.03, G:0.28, T:0.50
Consensus pattern (14 bp):
TTTGATTTTAAGGT
Found at i:10983418 original size:57 final size:58
Alignment explanation
Indices: 10983347--10983456 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 58
10983337 TTTTAAGGTT
* *
10983347 TGGGGTTCAAGGTTTTGATTTTAAGGTTTGGAAGGTCTA-TGTTTCAATTTTAACATA
1 TGGGGTTCAAGGTTTTGATTTTAAGGTTTAGAAGGTCTAGGGTTTCAATTTTAACATA
* * * * *
10983404 TGGGGTTTAGGGTTTTGATTTTAGGGTTTAGAGGGTTTAGGGTTTCAATTTTA
1 TGGGGTTCAAGGTTTTGATTTTAAGGTTTAGAAGGTCTAGGGTTTCAATTTTA
10983457 GAATTTAGGA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 33 0.73
58 12 0.27
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (58 bp):
TGGGGTTCAAGGTTTTGATTTTAAGGTTTAGAAGGTCTAGGGTTTCAATTTTAACATA
Found at i:10983477 original size:58 final size:57
Alignment explanation
Indices: 10983355--10983506 Score: 162
Period size: 58 Copynumber: 2.6 Consensus size: 57
10983345 TTTGGGGTTC
* * * * * *
10983355 AAGGTTTTGATTTTAAGGTTTGGAAGGTCTATGTTTCAATTTTAACATATGGGGTTT
1 AAGGTTTTGATTTTAGGGTTTAGAAGGTTTAGGTTTCAATTTTAACATATAGGATTT
* * *
10983412 AGGGTTTTGATTTTAGGGTTTAGAGGGTTTAGGGTTTCAATTTTAGA-ATTTAGGATTT
1 AAGGTTTTGATTTTAGGGTTTAGAAGGTTTA-GGTTTCAATTTTA-ACATATAGGATTT
* * *
10983470 AAGGTTTTAATTTGAGGGTTTAAAAGGTTTAAGGTTT
1 AAGGTTTTGATTTTAGGGTTTAGAAGGTTT-AGGTTT
10983507 AAAGAAAACG
Statistics
Matches: 78, Mismatches: 14, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
57 26 0.33
58 50 0.64
59 2 0.03
ACGTcount: A:0.25, C:0.03, G:0.27, T:0.45
Consensus pattern (57 bp):
AAGGTTTTGATTTTAGGGTTTAGAAGGTTTAGGTTTCAATTTTAACATATAGGATTT
Found at i:10983625 original size:3 final size:3
Alignment explanation
Indices: 10983619--10983718 Score: 64
Period size: 3 Copynumber: 33.3 Consensus size: 3
10983609 TTTTCTTTTC
* * * * * *
10983619 TAT TAT TAT TAAT TAT TAA T-T TAT TAAC TAT TAT AAT AAT AAT AAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
*
10983665 AAT TAT TAT TAT TAT TAT TAT TAT T-T TACT T-T TAAT T-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT T-AT TAT TAT TAT
*
10983709 TAT TAC TAT T
1 TAT TAT TAT T
10983719 TAATAATTCT
Statistics
Matches: 81, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
2 7 0.09
3 65 0.80
4 9 0.11
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:10984633 original size:24 final size:24
Alignment explanation
Indices: 10984606--10984653 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
10984596 TAGGGAAGAC
*
10984606 TGTTTGTA-ATTTTTTTTGTTTTTT
1 TGTTT-TAGATTTTTTTTCTTTTTT
10984630 TGTTTTATGATTTTTTTTCTTTTT
1 TGTTTTA-GATTTTTTTTCTTTTT
10984654 CTTATGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 5 0.24
25 14 0.67
ACGTcount: A:0.08, C:0.02, G:0.10, T:0.79
Consensus pattern (24 bp):
TGTTTTAGATTTTTTTTCTTTTTT
Found at i:10985039 original size:24 final size:24
Alignment explanation
Indices: 10985008--10985074 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
10984998 TGTGAAGTAT
**
10985008 GGTTTTTGGGCATGTGAGACTTGA
1 GGTTTTTGGGCATCCGAGACTTGA
* * *
10985032 GGTTTTTGAGTATCCGAGACTTGG
1 GGTTTTTGGGCATCCGAGACTTGA
*
10985056 GGTTTTTGGGCGTCCGAGA
1 GGTTTTTGGGCATCCGAGA
10985075 AAACTCTGAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.15, C:0.12, G:0.37, T:0.36
Consensus pattern (24 bp):
GGTTTTTGGGCATCCGAGACTTGA
Found at i:10986000 original size:20 final size:20
Alignment explanation
Indices: 10985953--10986002 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
10985943 AGTAAATATA
*
10985953 AAAATAAATTAATTTAATGT
1 AAAATTAATTAATTTAATGT
* ** *
10985973 GATTTTAATTAATTTAATTT
1 AAAATTAATTAATTTAATGT
10985993 AAAATTAATT
1 AAAATTAATT
10986003 GAATCGACTC
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (20 bp):
AAAATTAATTAATTTAATGT
Found at i:10988690 original size:6 final size:6
Alignment explanation
Indices: 10988681--10988711 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
10988671 AGGAGAAGGG
*
10988681 ATCTAT ATCTAT ATCTAT ATCTAT ATATAT A
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT A
10988712 GAGATATAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (6 bp):
ATCTAT
Found at i:10988765 original size:6 final size:6
Alignment explanation
Indices: 10988746--10988789 Score: 61
Period size: 6 Copynumber: 7.0 Consensus size: 6
10988736 ATATAAATAG
*
10988746 ATAGAT ATATAT ATAGAT ATAGAT ATAGATAT ATAGAT ATAGAT
1 ATAGAT ATAGAT ATAGAT ATAGAT ATAG--AT ATAGAT ATAGAT
10988790 CCCTTCTCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 28 0.82
8 6 0.18
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (6 bp):
ATAGAT
Found at i:10988771 original size:14 final size:14
Alignment explanation
Indices: 10988742--10988789 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
10988732 TTTTATATAA
* *
10988742 ATAGATAGATATAT
1 ATAGATATATAGAT
* *
10988756 ATATAGATATAGAT
1 ATAGATATATAGAT
10988770 ATAGATATATAGAT
1 ATAGATATATAGAT
10988784 ATAGAT
1 ATAGAT
10988790 CCCTTCTCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (14 bp):
ATAGATATATAGAT
Found at i:10988778 original size:67 final size:65
Alignment explanation
Indices: 10988702--10988942 Score: 363
Period size: 67 Copynumber: 3.8 Consensus size: 65
10988692 TATCTATATC
* *
10988702 TATATATATAGAGATATAGATCCCTTCTCCTTTTATATAAATAGATAGATATATATATAGATATA
1 TATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGAT--ATATATATATAGATATA
10988767 GA
64 GA
*
10988769 TATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAG----ATATATCT--ATAT--A
1 TATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGATATATATATATAGATATAGA
10988826 TATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGATAGATATATATATAGATATA
1 TATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGAT--ATATATATATAGATATA
10988891 GA
64 GA
10988893 TATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGATATAT
1 TATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGATATAT
10988943 CTATTTATAT
Statistics
Matches: 160, Mismatches: 4, Indels: 22
0.86 0.02 0.12
Matches are distributed among these distances:
57 45 0.28
59 4 0.03
61 7 0.04
63 7 0.04
65 8 0.05
67 89 0.56
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40
Consensus pattern (65 bp):
TATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGATATATATATATAGATATAGA
Found at i:10988779 original size:8 final size:8
Alignment explanation
Indices: 10988735--10988786 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
10988725 CTTCTCCTTT
*
10988735 TATATAAA
1 TATATAGA
*
10988743 TAGATAGA
1 TATATAGA
*
10988751 TATATATA
1 TATATAGA
* *
10988759 TAGATATA
1 TATATAGA
*
10988767 GATATAGA
1 TATATAGA
10988775 TATATAGA
1 TATATAGA
10988783 TATA
1 TATA
10988787 GATCCCTTCT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.37
Consensus pattern (8 bp):
TATATAGA
Found at i:10988825 original size:18 final size:18
Alignment explanation
Indices: 10988802--10988836 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10988792 CTTCTCCTTT
10988802 TATATAAATAGATATATC
1 TATATAAATAGATATATC
*
10988820 TATATATATAGATATAT
1 TATATAAATAGATATAT
10988837 AGATATAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (18 bp):
TATATAAATAGATATATC
Found at i:10988842 original size:18 final size:18
Alignment explanation
Indices: 10988803--10988843 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
10988793 TTCTCCTTTT
**
10988803 ATATAAATAGATATATCT
1 ATATAAATAGATATATAG
*
10988821 ATATATATAGATATATAG
1 ATATAAATAGATATATAG
10988839 ATATA
1 ATATA
10988844 GATCCCTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.39
Consensus pattern (18 bp):
ATATAAATAGATATATAG
Found at i:10988870 original size:124 final size:124
Alignment explanation
Indices: 10988690--10988953 Score: 492
Period size: 124 Copynumber: 2.1 Consensus size: 124
10988680 GATCTATATC
* *
10988690 TATATCTATATCTATATATATAGAGATATAGATCCCTTCTCCTTTTATATAAATAGATAGATATA
1 TATATCTATATATATAGATATAGAGATATAGATCCCTTCTCCTTTTATATAAATAGATAGATATA
10988755 TATATAGATATAGATATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGA
66 TATATAGATATAGATATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGA
*
10988814 TATATCTATATATATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGATAGATATA
1 TATATCTATATATATAGATATAGAGATATAGATCCCTTCTCCTTTTATATAAATAGATAGATATA
10988879 TATATAGATATAGATATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGA
66 TATATAGATATAGATATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGA
*
10988938 TATATCTATTTATATA
1 TATATCTATATATATA
10988954 AAAGGAGAAG
Statistics
Matches: 136, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 136 1.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (124 bp):
TATATCTATATATATAGATATAGAGATATAGATCCCTTCTCCTTTTATATAAATAGATAGATATA
TATATAGATATAGATATAGATATATAGATATAGATCCCTTCTCCTTTTATATAAATAGA
Found at i:10988889 original size:6 final size:6
Alignment explanation
Indices: 10988870--10988913 Score: 61
Period size: 6 Copynumber: 7.0 Consensus size: 6
10988860 ATATAAATAG
*
10988870 ATAGAT ATATAT ATAGAT ATAGAT ATAGATAT ATAGAT ATAGAT
1 ATAGAT ATAGAT ATAGAT ATAGAT ATAG--AT ATAGAT ATAGAT
10988914 CCCTTCTCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 28 0.82
8 6 0.18
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (6 bp):
ATAGAT
Found at i:10988895 original size:14 final size:14
Alignment explanation
Indices: 10988866--10988913 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
10988856 TTTTATATAA
* *
10988866 ATAGATAGATATAT
1 ATAGATATATAGAT
* *
10988880 ATATAGATATAGAT
1 ATAGATATATAGAT
10988894 ATAGATATATAGAT
1 ATAGATATATAGAT
10988908 ATAGAT
1 ATAGAT
10988914 CCCTTCTCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (14 bp):
ATAGATATATAGAT
Found at i:10988903 original size:8 final size:8
Alignment explanation
Indices: 10988859--10988910 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
10988849 CTTCTCCTTT
*
10988859 TATATAAA
1 TATATAGA
*
10988867 TAGATAGA
1 TATATAGA
*
10988875 TATATATA
1 TATATAGA
* *
10988883 TAGATATA
1 TATATAGA
*
10988891 GATATAGA
1 TATATAGA
10988899 TATATAGA
1 TATATAGA
10988907 TATA
1 TATA
10988911 GATCCCTTCT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.37
Consensus pattern (8 bp):
TATATAGA
Found at i:10989287 original size:22 final size:24
Alignment explanation
Indices: 10989252--10989295 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
10989242 ATTTGAATGG
*
10989252 AGGCATAGGGGGAAT-ATACAGCC
1 AGGCATAGAGGGAATCATACAGCC
10989275 AGGCA-AGAGGGAATCATACAG
1 AGGCATAGAGGGAATCATACAG
10989296 ATGGAGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.39, C:0.16, G:0.34, T:0.11
Consensus pattern (24 bp):
AGGCATAGAGGGAATCATACAGCC
Found at i:10990453 original size:8 final size:7
Alignment explanation
Indices: 10990430--10990462 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
10990420 GTTTTGCAGG
10990430 AAAATAA
1 AAAATAA
10990437 AAAATAA
1 AAAATAA
10990444 AAAATAA
1 AAAATAA
10990451 AAAATTAA
1 AAAA-TAA
10990459 AAAA
1 AAAA
10990463 AACAAGAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:10990472 original size:16 final size:15
Alignment explanation
Indices: 10990430--10990475 Score: 60
Period size: 14 Copynumber: 3.1 Consensus size: 15
10990420 GTTTTGCAGG
10990430 AAAATAAAAAA-TAA
1 AAAATAAAAAATTAA
10990444 AAAATAAAAAATTAA
1 AAAATAAAAAATTAA
10990459 AAAA-AACAAGAATTAA
1 AAAATAA-AA-AATTAA
10990475 A
1 A
10990476 GCAGCAACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 13 0.45
15 9 0.31
16 7 0.24
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.15
Consensus pattern (15 bp):
AAAATAAAAAATTAA
Found at i:10991185 original size:33 final size:29
Alignment explanation
Indices: 10991147--10991211 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 29
10991137 GAGTTCAAAT
10991147 TTTTTTTATCTCTAAATTAAAAGAAAAAAAAAC
1 TTTTTTTATCTC-AAA--AAAA-AAAAAAAAAC
* *
10991180 TTTTTTTATTTCAAAGAAAAAAAAAAAAC
1 TTTTTTTATCTCAAAAAAAAAAAAAAAAC
10991209 TTT
1 TTT
10991212 ACACGGGCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 13 0.43
30 3 0.10
32 3 0.10
33 11 0.37
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (29 bp):
TTTTTTTATCTCAAAAAAAAAAAAAAAAC
Found at i:10991362 original size:2 final size:2
Alignment explanation
Indices: 10991355--10991385 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
10991345 TTTGGCAGTC
10991355 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10991386 GAAACATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11002968 original size:145 final size:142
Alignment explanation
Indices: 11002805--11003288 Score: 377
Period size: 144 Copynumber: 3.4 Consensus size: 142
11002795 TCAAGTTTGG
* * *
11002805 ATTTTCATGAAACCTTCCAGACCTTAATCCTATAATATTTTATGATTTTTATGCATTTAAAATTA
1 ATTTT-ATGAAACTTTCCAGACCTTAATCTTATAATATTTCATGATTTTTATGCATTTAAAATTA
* * * *
11002870 TAGCAATACCTCGAAAGTGTGAAATTACAAAAATACCCTTTTATATGGGTATTTTTGTAATTTAG
65 TAGTAGTACCTCGAAAGTGTGAAATTAC-AAAATACCCTTTCATA-GGGTATTTTAGTAATTTAG
11002935 CCTTCTCGAGCTCAAA
128 CCTT-TCGAGCTCAAA
* * * * * * * * * * ** ** *
11002951 ATTTTGTGAAACTTTCCATATCTCACTTTTGTAACATCTCATCATTTTGGTG-AGTACAAAATCA
1 ATTTTATGAAACTTTCCAGACCTTAATCTTATAATATTTCATGATTTTTATGCA-TTTAAAATTA
* * * * * *
11003015 TAGTAGTATCTTGAGAAGTGTGAAATTATCAACATACCCTTTGA-AGGGTATTTTCGTAATTTGG
65 TAGTAGTACCTCGA-AAGTGTGAAATTA-CAAAATACCCTTTCATAGGGTATTTTAGTAATTTAG
* *
11003079 CTATTTCAAGCTCAAA
128 C-CTTTCGAGCTCAAA
* * * *
11003095 ATTTTATGAAACTTTTCAGATCC-TAGTTTTATAATATTTCATGATTTTTGATGCATTTTAAATT
1 ATTTTATGAAACTTTCCAGA-CCTTAATCTTATAATATTTCATGATTTTT-ATGCATTTAAAATT
* * * * *
11003159 ATAATAGTACCCCAAAAAGTGTGAAATTACCAAATATCC--TCATAAGGGTATTTTAGTAATTTA
64 ATAGTAGTACCTC-GAAAGTGTGAAATTACAAAATACCCTTTCAT-AGGGTATTTTAGTAATTTA
* *
11003222 GTCTTTCCGATG-TCGAA
127 GCCTTT-CGA-GCTCAAA
* * * * * *
11003239 ATTTCATAAAACTTTTCAGATCATAATCTTATAATATTTTATGATTTTTA
1 ATTTTATGAAACTTTCCAGACCTTAATCTTATAATATTTCATGATTTTTA
11003289 ATGTTTTATG
Statistics
Matches: 260, Mismatches: 65, Indels: 29
0.73 0.18 0.08
Matches are distributed among these distances:
142 2 0.01
143 5 0.02
144 137 0.53
145 83 0.32
146 32 0.12
147 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (142 bp):
ATTTTATGAAACTTTCCAGACCTTAATCTTATAATATTTCATGATTTTTATGCATTTAAAATTAT
AGTAGTACCTCGAAAGTGTGAAATTACAAAATACCCTTTCATAGGGTATTTTAGTAATTTAGCCT
TTCGAGCTCAAA
Found at i:11003798 original size:15 final size:15
Alignment explanation
Indices: 11003766--11003799 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11003756 ATCTACAAAA
* *
11003766 AAAAAAAAGAGCATG
1 AAAAAAAAGAGAAAG
11003781 AAAAAAAAGAGAAAG
1 AAAAAAAAGAGAAAG
11003796 AAAA
1 AAAA
11003800 CTAAAAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (15 bp):
AAAAAAAAGAGAAAG
Found at i:11011007 original size:20 final size:21
Alignment explanation
Indices: 11010971--11011010 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
11010961 AACATGAATA
11010971 TTCAAATATACATCATACAAT
1 TTCAAATATACATCATACAAT
11010992 TTCAAATATA-ATCATACAA
1 TTCAAATATACATCATACAA
11011011 AGATAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (21 bp):
TTCAAATATACATCATACAAT
Found at i:11019660 original size:16 final size:15
Alignment explanation
Indices: 11019606--11019661 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
11019596 TTTTAATCGA
11019606 ATTTTAATTTTTAAT
1 ATTTTAATTTTTAAT
*
11019621 -TTTTAAAATTTTTTTATT
1 ATTTT--AA--TTTTTAAT
11019639 ATTTTAATTTTTAAT
1 ATTTTAATTTTTAAT
11019654 ATATTTAA
1 AT-TTTAA
11019662 ATCAATAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
14 4 0.12
15 9 0.27
16 7 0.21
17 2 0.06
18 7 0.21
19 4 0.12
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTTAATTTTTAAT
Found at i:11019720 original size:10 final size:10
Alignment explanation
Indices: 11019707--11019739 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
11019697 TACATAAATT
11019707 TAAAAATATA
1 TAAAAATATA
11019717 TAAAAAT-TAA
1 TAAAAATAT-A
11019727 TAAAAATATA
1 TAAAAATATA
11019737 TAA
1 TAA
11019740 TTATATTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 1 0.05
10 19 0.90
11 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAAAATATA
Found at i:11022727 original size:8 final size:8
Alignment explanation
Indices: 11022714--11022743 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
11022704 CACACTTGAG
11022714 AGGTTGGC
1 AGGTTGGC
11022722 AGGTTGGC
1 AGGTTGGC
*
11022730 AGGTTGAC
1 AGGTTGGC
11022738 AGGTTG
1 AGGTTG
11022744 CAGCTAAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.17, C:0.10, G:0.47, T:0.27
Consensus pattern (8 bp):
AGGTTGGC
Found at i:11024026 original size:2 final size:2
Alignment explanation
Indices: 11024021--11024058 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
11024011 GAAAAGTAAA
11024021 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
11024059 TCTCATTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:11028404 original size:40 final size:39
Alignment explanation
Indices: 11028310--11028407 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 39
11028300 ATAAAAAGAT
* *
11028310 AATTTTTTAAATATTTAAAATACTCAAAAAAATTCTCAA
1 AATTTTTTAAAAATTTAAAAAACTCAAAAAAATTCTCAA
* * * * *
11028349 AA-ATTTTAATAATTTACAAAAATTCAAAATAATTCTGAA
1 AATTTTTTAAAAATTTA-AAAAACTCAAAAAAATTCTCAA
11028388 AATTTTTTAAAAATTTAAAA
1 AATTTTTTAAAAATTTAAAA
11028408 TCTTTTCAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
38 11 0.23
39 25 0.52
40 12 0.25
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (39 bp):
AATTTTTTAAAAATTTAAAAAACTCAAAAAAATTCTCAA
Found at i:11028413 original size:18 final size:19
Alignment explanation
Indices: 11028386--11028421 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11028376 AATAATTCTG
*
11028386 AAAAT-TTTTTAAAAATTT
1 AAAATCTTTTCAAAAATTT
11028404 AAAATCTTTTCAAAAATT
1 AAAATCTTTTCAAAAATT
11028422 CCAAAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAATCTTTTCAAAAATTT
Found at i:11028496 original size:22 final size:21
Alignment explanation
Indices: 11028472--11028513 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
11028462 AAAAAATGAA
* *
11028472 AAAAAAATTGTAAAATTTTTT
1 AAAAAAATTCTAAAAGTTTTT
11028493 AAAAAAATTCTAAAAGTTTTT
1 AAAAAAATTCTAAAAGTTTTT
11028514 CCAAAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.40
Consensus pattern (21 bp):
AAAAAAATTCTAAAAGTTTTT
Found at i:11028497 original size:30 final size:28
Alignment explanation
Indices: 11028430--11028497 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
11028420 TTCCAAAAAG
*
11028430 TTTTAAAATTTGAAAAAAAAATTAAAATT
1 TTTTAAAA-ATGAAAAAAAAATTAAAATT
***
11028459 TGAAAAAAATGAAAAAAAAATTGTAAAATT
1 TTTTAAAAATGAAAAAAAAA-T-TAAAATT
11028489 TTTTAAAAA
1 TTTTAAAAA
11028498 AATTCTAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
28 11 0.37
29 6 0.20
30 13 0.43
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (28 bp):
TTTTAAAAATGAAAAAAAAATTAAAATT
Found at i:11028519 original size:21 final size:21
Alignment explanation
Indices: 11028472--11028537 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
11028462 AAAAAATGAA
* *
11028472 AAAAAAATTGTAAAATTTTTT
1 AAAAAAATTATAAAAGTTTTT
*
11028493 AAAAAAATTCTAAAAGTTTTT
1 AAAAAAATTATAAAAGTTTTT
** **
11028514 -CCAAAATTATAAAAAATTTT
1 AAAAAAATTATAAAAGTTTTT
11028534 AAAA
1 AAAA
11028538 TTTTCAAAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 15 0.43
21 20 0.57
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (21 bp):
AAAAAAATTATAAAAGTTTTT
Found at i:11028557 original size:10 final size:10
Alignment explanation
Indices: 11028516--11028586 Score: 56
Period size: 10 Copynumber: 7.2 Consensus size: 10
11028506 AAGTTTTTCC
*
11028516 AAAATTATAA
1 AAAATTCTAA
*
11028526 AAAATTTTAA
1 AAAATTCTAA
** *
11028536 AATTTTCAAA
1 AAAATTCTAA
11028546 AAAATTCT-A
1 AAAATTCTAA
11028555 AAAATTC-AA
1 AAAATTCTAA
* *
11028564 AACTATTCAAA
1 AA-AATTCTAA
11028575 AAAATTCTAA
1 AAAATTCTAA
11028585 AA
1 AA
11028587 TTTTTTGAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
9 11 0.23
10 32 0.68
11 4 0.09
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (10 bp):
AAAATTCTAA
Found at i:11028559 original size:29 final size:30
Alignment explanation
Indices: 11028516--11028591 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 30
11028506 AAGTTTTTCC
* *
11028516 AAAATTATAAAAAATTTTAAAA-TTTTCAAA
1 AAAATTCT-AAAAATTTTAAAACTATTCAAA
*
11028546 AAAATTCTAAAAA-TTCAAAACTATTCAAA
1 AAAATTCTAAAAATTTTAAAACTATTCAAA
*
11028575 AAAATTCTAAAATTTTT
1 AAAATTCTAAAAATTTT
11028592 TGAAAATTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 6 0.15
29 24 0.62
30 9 0.23
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.36
Consensus pattern (30 bp):
AAAATTCTAAAAATTTTAAAACTATTCAAA
Found at i:11029171 original size:9 final size:9
Alignment explanation
Indices: 11029159--11029249 Score: 65
Period size: 10 Copynumber: 9.6 Consensus size: 9
11029149 TTTTTTGGAT
*
11029159 ATTTTGTAA
1 ATTTTTTAA
11029168 ATTTTTTATA
1 ATTTTTTA-A
*
11029178 ATTTTTCAAA
1 ATTTTT-TAA
11029188 ATTTTTTAA
1 ATTTTTTAA
11029197 ATTTTCTTAA
1 ATTTT-TTAA
*
11029207 TTTTTTTCAA
1 ATTTTTT-AA
** *
11029217 AAATTTAAA
1 ATTTTTTAA
*
11029226 ATATTTTAGA
1 ATTTTTTA-A
*
11029236 ATTTTTTTA
1 ATTTTTTAA
11029245 ATTTT
1 ATTTT
11029250 AGAAAAAATT
Statistics
Matches: 65, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
9 30 0.46
10 34 0.52
11 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (9 bp):
ATTTTTTAA
Found at i:11029183 original size:20 final size:20
Alignment explanation
Indices: 11029137--11029201 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
11029127 ATTTGTTTTG
*
11029137 AATTTTTGGAAATTTTTTGGAT
1 AATTTTTGAAAATTTTTT--AT
*
11029159 -A-TTTTGTAAATTTTTTAT
1 AATTTTTGAAAATTTTTTAT
*
11029177 AATTTTTCAAAATTTTTTA-
1 AATTTTTGAAAATTTTTTAT
11029196 AATTTT
1 AATTTT
11029202 CTTAATTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.05
19 7 0.18
20 28 0.74
21 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.60
Consensus pattern (20 bp):
AATTTTTGAAAATTTTTTAT
Found at i:11029270 original size:37 final size:35
Alignment explanation
Indices: 11029215--11029323 Score: 94
Period size: 38 Copynumber: 2.9 Consensus size: 35
11029205 AATTTTTTTC
*
11029215 AAAAATTTAAAATATTTTAGAATTTTTTTAATTTTAGA
1 AAAAATTT-TAAT-TTTTAGAATTTTTTTAATTTTA-A
* * **
11029253 AAAAATTTTATTTTTTTAAAAATTTTTAGAATTTGTAA
1 AAAAATTTTA-ATTTTT-AGAATTTTTTTAATTT-TAA
*
11029291 AAAATTTTTAATTTTTAG-ATTTTTTTAAATTTT
1 AAAAATTTTAATTTTTAGAATTTTTTT-AATTTT
11029324 CTTTTAATAA
Statistics
Matches: 57, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
35 7 0.12
36 6 0.11
37 10 0.18
38 32 0.56
39 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (35 bp):
AAAAATTTTAATTTTTAGAATTTTTTTAATTTTAA
Found at i:11029303 original size:18 final size:17
Alignment explanation
Indices: 11029239--11029305 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 17
11029229 TTTTAGAATT
11029239 TTTTTAATTTTAGAAAAA
1 TTTTTAATTTTA-AAAAA
* * *
11029257 ATTTTATTTTTTTAAAAA
1 TTTTTA-ATTTTAAAAAA
11029275 TTTTTAGAATTTGTAAAAAA
1 TTTTT--AATTT-TAAAAAA
11029295 TTTTTAATTTT
1 TTTTTAATTTT
11029306 TAGATTTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
17 1 0.03
18 19 0.49
19 7 0.18
20 12 0.31
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (17 bp):
TTTTTAATTTTAAAAAA
Found at i:11036911 original size:24 final size:24
Alignment explanation
Indices: 11036879--11036953 Score: 114
Period size: 24 Copynumber: 3.0 Consensus size: 24
11036869 GGGCCTTGCA
11036879 TCTGGGACTGGTGAAGAGACTAAG
1 TCTGGGACTGGTGAAGAGACTAAG
11036903 TCTGGGACTGGTGAAGAGACGACTAAG
1 TCTGGGACTGGTG-A-AGA-GACTAAG
*
11036930 TCTAGGACTGGTGAAGAGACTAAG
1 TCTGGGACTGGTGAAGAGACTAAG
11036954 GTGCATAAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
24 20 0.43
25 4 0.09
26 4 0.09
27 19 0.40
ACGTcount: A:0.31, C:0.13, G:0.36, T:0.20
Consensus pattern (24 bp):
TCTGGGACTGGTGAAGAGACTAAG
Found at i:11036937 original size:27 final size:27
Alignment explanation
Indices: 11036883--11036949 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
11036873 CTTGCATCTG
*
11036883 GGACTGGTG-A-AGA-GACTAAGTCTG
1 GGACTGGTGAAGAGACGACTAAGTCTA
11036907 GGACTGGTGAAGAGACGACTAAGTCTA
1 GGACTGGTGAAGAGACGACTAAGTCTA
11036934 GGACTGGTGAAGAGAC
1 GGACTGGTGAAGAGAC
11036950 TAAGGTGCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
24 9 0.23
25 1 0.03
26 3 0.08
27 26 0.67
ACGTcount: A:0.31, C:0.13, G:0.37, T:0.18
Consensus pattern (27 bp):
GGACTGGTGAAGAGACGACTAAGTCTA
Found at i:11037575 original size:22 final size:22
Alignment explanation
Indices: 11037548--11037613 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
11037538 GCAGGAGATA
11037548 ATAAAGTTAGTGAAAGAAAATG
1 ATAAAGTTAGTGAAAGAAAATG
* * *
11037570 ATAAAG--A--G-CAGGAGATG
1 ATAAAGTTAGTGAAAGAAAATG
11037587 ATAAAGTTAGTGAAAGAAAATG
1 ATAAAGTTAGTGAAAGAAAATG
11037609 ATAAA
1 ATAAA
11037614 AACATTCTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 12 0.36
18 1 0.03
19 1 0.03
20 1 0.03
21 1 0.03
22 17 0.52
ACGTcount: A:0.55, C:0.02, G:0.24, T:0.20
Consensus pattern (22 bp):
ATAAAGTTAGTGAAAGAAAATG
Found at i:11037579 original size:39 final size:39
Alignment explanation
Indices: 11037536--11037613 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
11037526 GAAAGTTGAG
11037536 GAGCAGGAGATAATAAAGTTAGTGAAAGAAAATGATAAA
1 GAGCAGGAGATAATAAAGTTAGTGAAAGAAAATGATAAA
*
11037575 GAGCAGGAGATGATAAAGTTAGTGAAAGAAAATGATAAA
1 GAGCAGGAGATAATAAAGTTAGTGAAAGAAAATGATAAA
11037614 AACATTCTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.53, C:0.03, G:0.27, T:0.18
Consensus pattern (39 bp):
GAGCAGGAGATAATAAAGTTAGTGAAAGAAAATGATAAA
Found at i:11044162 original size:19 final size:19
Alignment explanation
Indices: 11044138--11044186 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
11044128 AATAAAAAAT
11044138 TTAAATTATTTAA-TATTTA
1 TTAAATTATTTAATTA-TTA
*
11044157 TTAAATTATTAAATTATTA
1 TTAAATTATTTAATTATTA
11044176 TTAAATTATTT
1 TTAAATTATTT
11044187 TTATATCAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 25 0.93
20 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTAAATTATTTAATTATTA
Found at i:11044175 original size:11 final size:11
Alignment explanation
Indices: 11044161--11044185 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11044151 TATTTATTAA
11044161 ATTATTAAATT
1 ATTATTAAATT
11044172 ATTATTAAATT
1 ATTATTAAATT
11044183 ATT
1 ATT
11044186 TTTATATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTATTAAATT
Found at i:11045192 original size:9 final size:9
Alignment explanation
Indices: 11045180--11045252 Score: 51
Period size: 9 Copynumber: 7.8 Consensus size: 9
11045170 AAGTTTTGGG
11045180 AATTTTTAT
1 AATTTTTAT
11045189 AATTTTTA-
1 AATTTTTAT
11045197 AGATTTTTAT
1 A-ATTTTTAT
*
11045207 GAATATTTTTT
1 -AAT-TTTTAT
*
11045218 AATTTTATTT
1 AATTTT-TAT
11045228 AATTCTTTA-
1 AATT-TTTAT
* *
11045237 GATTTTTTT
1 AATTTTTAT
11045246 AATTTTT
1 AATTTTT
11045253 TAAAAAATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
8 4 0.08
9 27 0.52
10 13 0.25
11 8 0.15
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (9 bp):
AATTTTTAT
Found at i:11045253 original size:9 final size:9
Alignment explanation
Indices: 11045180--11045253 Score: 53
Period size: 10 Copynumber: 7.9 Consensus size: 9
11045170 AAGTTTTGGG
*
11045180 AATTTTTAT
1 AATTTTTTT
*
11045189 AA-TTTTTA
1 AATTTTTTT
*
11045197 AGATTTTTATG
1 A-ATTTTT-TT
11045208 AATATTTTTT
1 AAT-TTTTTT
11045218 AATTTTATTT
1 AATTTT-TTT
*
11045228 AA-TTCTTT
1 AATTTTTTT
11045236 AGATTTTTTT
1 A-ATTTTTTT
11045246 AATTTTTT
1 AATTTTTT
11045254 AAAAAATTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
8 9 0.17
9 16 0.31
10 21 0.40
11 6 0.12
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (9 bp):
AATTTTTTT
Found at i:11045254 original size:18 final size:18
Alignment explanation
Indices: 11045181--11045254 Score: 69
Period size: 18 Copynumber: 3.9 Consensus size: 18
11045171 AGTTTTGGGA
* *
11045181 ATTTTTATAATTTTTAAG
1 ATTTTTTTAATTTTTTAG
*
11045199 ATTTTTATGAATATTTTTTA-
1 ATTTTT-T-TA-ATTTTTTAG
*
11045219 ATTTTATTTAATTCTTTAG
1 ATTTT-TTTAATTTTTTAG
11045238 ATTTTTTTAATTTTTTA
1 ATTTTTTTAATTTTTTA
11045255 AAAAATTTTC
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
18 24 0.53
19 6 0.13
20 7 0.16
21 8 0.18
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (18 bp):
ATTTTTTTAATTTTTTAG
Found at i:11045938 original size:23 final size:22
Alignment explanation
Indices: 11045905--11045947 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
11045895 TTTAAAATTT
*
11045905 AATAATTTAAAATATAATATAAA
1 AATAATATAAAA-ATAATATAAA
*
11045928 AATAATATAAAAATTATATA
1 AATAATATAAAAATAATATA
11045948 TATTTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
AATAATATAAAAATAATATAAA
Found at i:11045949 original size:13 final size:11
Alignment explanation
Indices: 11045905--11045947 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
11045895 TTTAAAATTT
*
11045905 AATAATTTAAA
1 AATAATATAAA
11045916 ATATAATATAAA
1 A-ATAATATAAA
11045928 AATAATATAAA
1 AATAATATAAA
*
11045939 AATTATATA
1 AATAATATA
11045948 TATTTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATATAAA
Found at i:11046332 original size:24 final size:21
Alignment explanation
Indices: 11046291--11046348 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
11046281 TTTAAATTTG
*
11046291 ATATAAAATTAATATAATTATATA
1 ATAT-AAATTAAAATAA-TA-ATA
*
11046315 ATATAAATTAAAATTAATAATT
1 ATATAAATTAAAA-TAATAATA
*
11046337 ATATATATTAAA
1 ATATAAATTAAA
11046349 TGCACATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 13 0.43
23 10 0.33
24 7 0.23
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
ATATAAATTAAAATAATAATA
Found at i:11046341 original size:27 final size:29
Alignment explanation
Indices: 11046294--11046349 Score: 82
Period size: 27 Copynumber: 2.0 Consensus size: 29
11046284 AAATTTGATA
11046294 TAAAATTAATATAATTATATA-ATATAAAT
1 TAAAATTAATATAATTATATATAT-TAAAT
11046323 TAAAATT-A-ATAATTATATATATTAAAT
1 TAAAATTAATATAATTATATATATTAAAT
11046350 GCACATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 16 0.62
28 3 0.12
29 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
TAAAATTAATATAATTATATATATTAAAT
Found at i:11049688 original size:29 final size:29
Alignment explanation
Indices: 11049654--11049739 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
11049644 TTTATAGTTT
*
11049654 TATTTAGATAAATTTTTATATTTTTATTA
1 TATTTAAATAAATTTTTATATTTTTATTA
*
11049683 TATTTAAAT-AATTTTT-TATCTTTAATTTA
1 TATTTAAATAAATTTTTATAT-TTTTA-TTA
*
11049712 TATTCAAATAAATTTTTA-ATTTTT-TTA
1 TATTTAAATAAATTTTTATATTTTTATTA
11049739 T
1 T
11049740 CCAAATAACT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
27 7 0.14
28 11 0.22
29 22 0.45
30 9 0.18
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (29 bp):
TATTTAAATAAATTTTTATATTTTTATTA
Found at i:11058926 original size:11 final size:11
Alignment explanation
Indices: 11058907--11058949 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
11058897 AATCCCATAA
11058907 GAGATTTGTTT
1 GAGATTTGTTT
* *
11058918 GAAATTTGTTA
1 GAGATTTGTTT
11058929 GAGATTTGTTT
1 GAGATTTGTTT
11058940 GAGATTTGTT
1 GAGATTTGTT
11058950 AGATATTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:11058931 original size:22 final size:22
Alignment explanation
Indices: 11058906--11058952 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
11058896 AAATCCCATA
11058906 AGAGATTTGTTTGAAATTTGTT
1 AGAGATTTGTTTGAAATTTGTT
*
11058928 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAAATTTGTT
11058950 AGA
1 AGA
11058953 TATTGCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.47
Consensus pattern (22 bp):
AGAGATTTGTTTGAAATTTGTT
Found at i:11059042 original size:52 final size:52
Alignment explanation
Indices: 11058973--11059129 Score: 183
Period size: 52 Copynumber: 3.0 Consensus size: 52
11058963 TGGACAAGAA
* * *
11058973 GACTTGCAAAAGAAGAATTCCAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGCAAGTTT
* * *
11059025 GACTGGCAAGAGAAGAATTTTAAAAGGAAA-AGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGA-GAAAGAGGATTCTTAATAGGCAAGTTT
** * * *
11059077 GACTTATAGGAGAAGAATTCTAAGA-AGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGAAAGA-GGATTCTTAATAGGCAAGTTT
11059129 G
1 G
11059130 TATGGTTATA
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
50 2 0.02
51 1 0.01
52 81 0.92
53 4 0.05
ACGTcount: A:0.40, C:0.08, G:0.26, T:0.25
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGCAAGTTT
Found at i:11063956 original size:18 final size:18
Alignment explanation
Indices: 11063935--11063969 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
11063925 ATTAAAAAAT
11063935 ATATTTTTATT-AATTTTC
1 ATATTTTT-TTAAATTTTC
11063953 ATATTTTTTTAAATTTT
1 ATATTTTTTTAAATTTT
11063970 TATAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
ATATTTTTTTAAATTTTC
Found at i:11065268 original size:19 final size:19
Alignment explanation
Indices: 11065227--11065269 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
11065217 ATTATTAATT
* *
11065227 ATTAATTTATTTCAACGTC
1 ATTAATTTATTTCAACATA
* *
11065246 ATTAATTTGTTTTAACATA
1 ATTAATTTATTTCAACATA
11065265 ATTAA
1 ATTAA
11065270 ATATTTAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTAATTTATTTCAACATA
Found at i:11065290 original size:17 final size:17
Alignment explanation
Indices: 11065270--11065319 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
11065260 ACATAATTAA
11065270 ATATTTAAAATTTAAAT
1 ATATTTAAAATTTAAAT
** *
11065287 ATATTT-ATTTTTAAAG
1 ATATTTAAAATTTAAAT
11065303 AT-TTTAAAATTTTAAAT
1 ATATTTAAAA-TTTAAAT
11065320 TTTTTAATAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
15 3 0.12
16 10 0.40
17 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATTTAAAATTTAAAT
Found at i:11065441 original size:25 final size:24
Alignment explanation
Indices: 11065407--11065467 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
11065397 ATATATATTT
* *
11065407 TATTACTTTTAAAAACTTTTTTATA
1 TATTATTTTTAAAAA-TATTTTATA
**
11065432 TATTATTTTTTGAAATATTTTATA
1 TATTATTTTTAAAAATATTTTATA
11065456 TATTATTGTTTA
1 TATTATT-TTTA
11065468 CACATAGAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 15 0.50
25 15 0.50
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (24 bp):
TATTATTTTTAAAAATATTTTATA
Found at i:11068933 original size:50 final size:50
Alignment explanation
Indices: 11068873--11068968 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
11068863 TATCATTTTG
* * *
11068873 GATAACAACCCTGAAAAATATATACAAATTGAAACTAAACTTAAACCTGT
1 GATAACAACCCTAAAAAACATATACAAATCGAAACTAAACTTAAACCTGT
*
11068923 GATAATAACCCTAAAAAACATATACAAATCGAAACTAAACTTAAAC
1 GATAACAACCCTAAAAAACATATACAAATCGAAACTAAACTTAAAC
11068969 ATGAGGAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.22
Consensus pattern (50 bp):
GATAACAACCCTAAAAAACATATACAAATCGAAACTAAACTTAAACCTGT
Found at i:11072679 original size:27 final size:27
Alignment explanation
Indices: 11072628--11072679 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
11072618 GTATCAGCTA
* * *
11072628 CATCAGTAACAGTAGTAGCACCCTCAT
1 CATCAGGAACAGTAGTAACAACCTCAT
*
11072655 CATCAGGAATAGTAGTAACAACCTC
1 CATCAGGAACAGTAGTAACAACCTC
11072680 GACCTGAGCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (27 bp):
CATCAGGAACAGTAGTAACAACCTCAT
Found at i:11073051 original size:22 final size:22
Alignment explanation
Indices: 11073026--11073077 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
11073016 AGTCTAACTA
*
11073026 TTTCAGCTTGAGCGTCACTAAG
1 TTTCAGCTAGAGCGTCACTAAG
*
11073048 TTTCAGCCAGAGCGTCACTAAG
1 TTTCAGCTAGAGCGTCACTAAG
11073070 TTTCAGCT
1 TTTCAGCT
11073078 CAGTCTACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (22 bp):
TTTCAGCTAGAGCGTCACTAAG
Found at i:11074379 original size:16 final size:17
Alignment explanation
Indices: 11074358--11074398 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
11074348 AGTAAGAATT
* *
11074358 AAATTATAA-AAATTAA
1 AAATTAAAACAAATAAA
11074374 AAATTAAAACAAATAAA
1 AAATTAAAACAAATAAA
11074391 AAA-TAAAA
1 AAATTAAAA
11074399 TGAAAACCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (17 bp):
AAATTAAAACAAATAAA
Found at i:11074398 original size:22 final size:23
Alignment explanation
Indices: 11074363--11074405 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
11074353 GAATTAAATT
* *
11074363 ATAAAAATTAAAAATTAAAACAA
1 ATAAAAAATAAAAATGAAAACAA
11074386 ATAAAAAAT-AAAATGAAAAC
1 ATAAAAAATAAAAATGAAAAC
11074406 CTCAGACTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (23 bp):
ATAAAAAATAAAAATGAAAACAA
Found at i:11077692 original size:2 final size:2
Alignment explanation
Indices: 11077687--11077722 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
11077677 CCCCCCCCCC
11077687 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
11077723 AAATACATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:11079404 original size:16 final size:18
Alignment explanation
Indices: 11079378--11079412 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
11079368 AGTTGAAGAG
11079378 TTTTGTTCTCTTTT-TTC
1 TTTTGTTCTCTTTTCTTC
11079395 TTTT-TTCTCTTTTCTTC
1 TTTTGTTCTCTTTTCTTC
11079412 T
1 T
11079413 GATATTTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTTGTTCTCTTTTCTTC
Found at i:11094926 original size:5 final size:5
Alignment explanation
Indices: 11094916--11094947 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
11094906 TGATTAGACA
*
11094916 GGGAT GGGAT GGGAT GGGAT GGAAT GGGAT GG
1 GGGAT GGGAT GGGAT GGGAT GGGAT GGGAT GG
11094948 AAATTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.59, T:0.19
Consensus pattern (5 bp):
GGGAT
Found at i:11098045 original size:17 final size:17
Alignment explanation
Indices: 11098025--11098067 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
11098015 TAATTTATTT
11098025 TTTTCAATTG-ATTTTTA
1 TTTT-AATTGCATTTTTA
11098042 TTTTAATTGCATTTTTTTA
1 TTTTAATTGCA--TTTTTA
11098061 TTTTAAT
1 TTTTAAT
11098068 ATTTGATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.22
17 5 0.22
19 13 0.57
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTTAATTGCATTTTTA
Found at i:11098304 original size:13 final size:14
Alignment explanation
Indices: 11098286--11098318 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
11098276 TCCTATTATT
11098286 TATTATAATTATAA
1 TATTATAATTATAA
11098300 T-TTATAATTATAA
1 TATTATAATTATAA
11098313 TATTAT
1 TATTAT
11098319 TTTATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTATAATTATAA
Found at i:11099149 original size:51 final size:51
Alignment explanation
Indices: 11099089--11099188 Score: 182
Period size: 51 Copynumber: 2.0 Consensus size: 51
11099079 TATATTATGC
11099089 GTCTTTAACTAGAAATATCTAACCTCACACCAATAAATAAAATAAAATTTT
1 GTCTTTAACTAGAAATATCTAACCTCACACCAATAAATAAAATAAAATTTT
* *
11099140 GTCTTTAACTAGAAATATCTAACCTCACACCATTAAATAAAATAGAATT
1 GTCTTTAACTAGAAATATCTAACCTCACACCAATAAATAAAATAAAATT
11099189 CGATTGGCGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.46, C:0.18, G:0.05, T:0.31
Consensus pattern (51 bp):
GTCTTTAACTAGAAATATCTAACCTCACACCAATAAATAAAATAAAATTTT
Found at i:11104793 original size:30 final size:32
Alignment explanation
Indices: 11104737--11104797 Score: 90
Period size: 30 Copynumber: 1.9 Consensus size: 32
11104727 TGGCTTCTTT
11104737 TTTTCTCTTTCTTTCCTTACCAAACTTGATGCC
1 TTTTCTCTTTCTTT-CTTACCAAACTTGATGCC
*
11104770 TTTTCTCTTT-TTT-TTACCGAACTTGATG
1 TTTTCTCTTTCTTTCTTACCAAACTTGATG
11104798 TTTACTGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 14 0.52
32 3 0.11
33 10 0.37
ACGTcount: A:0.15, C:0.25, G:0.08, T:0.52
Consensus pattern (32 bp):
TTTTCTCTTTCTTTCTTACCAAACTTGATGCC
Found at i:11111270 original size:25 final size:24
Alignment explanation
Indices: 11111239--11111321 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 24
11111229 TATATTAAAA
11111239 TTTTAAAAAATTATATTTTTTGATT
1 TTTTAAAAAATTATA-TTTTTGATT
* * *
11111264 TTTTAAAAAAATAGATTTAT--TT
1 TTTTAAAAAATTATATTTTTGATT
* *
11111286 TTTTAAAAAATTGCTA-TTTTGAAT
1 TTTTAAAAAATT-ATATTTTTGATT
11111310 TTTTAAAAAATT
1 TTTTAAAAAATT
11111322 TTCAAAATTT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
22 16 0.34
23 1 0.02
24 17 0.36
25 13 0.28
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (24 bp):
TTTTAAAAAATTATATTTTTGATT
Found at i:11111391 original size:20 final size:21
Alignment explanation
Indices: 11111363--11111409 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
11111353 CCAAATTGTT
*
11111363 ACATTAATAAAATCAAT-GTC
1 ACATCAATAAAATCAATAGTC
* *
11111383 ACATCAATAAAATTAATATTC
1 ACATCAATAAAATCAATAGTC
11111404 ACATCA
1 ACATCA
11111410 TTAATATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.30
Consensus pattern (21 bp):
ACATCAATAAAATCAATAGTC
Found at i:11111904 original size:23 final size:22
Alignment explanation
Indices: 11111853--11111903 Score: 86
Period size: 22 Copynumber: 2.3 Consensus size: 22
11111843 TTTTGAAACT
11111853 TTATTTTAAATAAAAATAATTA
1 TTATTTTAAATAAAAATAATTA
11111875 TTATTTTAATATAAAAAT-ATTA
1 TTATTTTAA-ATAAAAATAATTA
11111897 TTATTTT
1 TTATTTT
11111904 TTTGAATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTATTTTAAATAAAAATAATTA
Found at i:11111924 original size:19 final size:21
Alignment explanation
Indices: 11111886--11111939 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
11111876 TATTTTAATA
* * *
11111886 TAAAAATATTATT-ATTTTTT
1 TAAATATATTATTAAATTTTG
*
11111906 TGAAT-TATTATTAAATTTTG
1 TAAATATATTATTAAATTTTG
11111926 TAAATATATTATTA
1 TAAATATATTATTA
11111940 TAAAAAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 7 0.26
20 12 0.44
21 8 0.30
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (21 bp):
TAAATATATTATTAAATTTTG
Found at i:11112007 original size:54 final size:52
Alignment explanation
Indices: 11111949--11112057 Score: 121
Period size: 53 Copynumber: 2.0 Consensus size: 52
11111939 ATAAAAAAAT
* * * * *
11111949 TTTAAAAA-AATATTTGATATATTAAAATCATTTTTATTACTTTTTAATTATTTA
1 TTTAAAAATAATATTTGACATA--AAAAT-AATTTTAATAATTTTTAATAATTTA
*
11112003 TTTAAAAATTATTATTTGACATAAAAATAATTTTAATAATTTTTAATAATTTA
1 TTTAAAAA-TAATATTTGACATAAAAATAATTTTAATAATTTTTAATAATTTA
11112056 TT
1 TT
11112058 AATTTTATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
53 23 0.49
54 13 0.28
56 11 0.23
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (52 bp):
TTTAAAAATAATATTTGACATAAAAATAATTTTAATAATTTTTAATAATTTA
Found at i:11112048 original size:10 final size:10
Alignment explanation
Indices: 11112028--11112060 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
11112018 TTGACATAAA
11112028 AATAA-TTTT
1 AATAATTTTT
11112037 AATAATTTTT
1 AATAATTTTT
11112047 AATAATTTATT
1 AATAATTT-TT
11112058 AAT
1 AAT
11112061 TTTATAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 5 0.23
10 12 0.55
11 5 0.23
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
AATAATTTTT
Found at i:11112052 original size:19 final size:18
Alignment explanation
Indices: 11112028--11112063 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
11112018 TTGACATAAA
11112028 AATAATTTTAATAATTTTT
1 AATAA-TTTAATAATTTTT
*
11112047 AATAATTTATTAATTTT
1 AATAATTTAATAATTTT
11112064 ATAAATGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
AATAATTTAATAATTTTT
Found at i:11112204 original size:21 final size:21
Alignment explanation
Indices: 11112180--11112226 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
11112170 ACCCTTGATT
11112180 TTAATATCATTATTATAATAA
1 TTAATATCATTATTATAATAA
* * *
11112201 TTAATTTTATTATTATATTAA
1 TTAATATCATTATTATAATAA
11112222 TTAAT
1 TTAAT
11112227 TTAATATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TTAATATCATTATTATAATAA
Found at i:11112212 original size:18 final size:17
Alignment explanation
Indices: 11112189--11112223 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11112179 TTTAATATCA
11112189 TTATTATAATAATTAATT
1 TTATTATAAT-ATTAATT
*
11112207 TTATTATTATATTAATT
1 TTATTATAATATTAATT
11112224 AATTTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTATAATATTAATT
Found at i:11112227 original size:21 final size:21
Alignment explanation
Indices: 11112188--11112228 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
11112178 TTTTAATATC
11112188 ATTATTATAATAATTAATTTT
1 ATTATTATAATAATTAATTTT
*
11112209 ATTATTATATTAATTAATTT
1 ATTATTATAATAATTAATTT
11112229 AATATTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATTATAATAATTAATTTT
Found at i:11118058 original size:7 final size:7
Alignment explanation
Indices: 11118046--11118070 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11118036 CCCTCCCAAG
11118046 AAAATAA
1 AAAATAA
11118053 AAAATAA
1 AAAATAA
11118060 AAAATAA
1 AAAATAA
11118067 AAAA
1 AAAA
11118071 AAGGACTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:11120215 original size:29 final size:29
Alignment explanation
Indices: 11120183--11120240 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
11120173 GGGAAGGGAG
11120183 AAAGGCTGTTGATGTATCAACCTTTCCAT
1 AAAGGCTGTTGATGTATCAACCTTTCCAT
*
11120212 AAAGGTTGTTGATGTATCAACCTTTCCAT
1 AAAGGCTGTTGATGTATCAACCTTTCCAT
11120241 CATTACTGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (29 bp):
AAAGGCTGTTGATGTATCAACCTTTCCAT
Found at i:11122829 original size:56 final size:56
Alignment explanation
Indices: 11122743--11122855 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
11122733 AAATATATTA
*
11122743 ATAATTAATTAAAAAAAGAAAGGAGATAGTGGTACCATGTAAGGCACCATTCACCT
1 ATAATTAATTAAAAAAAGAAAGGAGATAGTGGTACCATGCAAGGCACCATTCACCT
*
11122799 ATAATTAATTAAAAAAAGAGAGGAGATAGTGGTACCATGCAAGGCACCATTCACCT
1 ATAATTAATTAAAAAAAGAAAGGAGATAGTGGTACCATGCAAGGCACCATTCACCT
11122855 A
1 A
11122856 CTTTAACTAC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (56 bp):
ATAATTAATTAAAAAAAGAAAGGAGATAGTGGTACCATGCAAGGCACCATTCACCT
Found at i:11128158 original size:14 final size:13
Alignment explanation
Indices: 11128138--11128169 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
11128128 GTGGACATGT
11128138 AAAAAAAATAAAA
1 AAAAAAAATAAAA
11128151 ACAAAAAAATAAAA
1 A-AAAAAAATAAAA
11128165 AAAAA
1 AAAAA
11128170 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.91, C:0.03, G:0.00, T:0.06
Consensus pattern (13 bp):
AAAAAAAATAAAA
Found at i:11128275 original size:16 final size:18
Alignment explanation
Indices: 11128256--11128294 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
11128246 AGGGACAAGG
11128256 AAAAAGCCCAA-AA-TAA
1 AAAAAGCCCAATAATTAA
*
11128272 AAAAAGGCCAATAATTAA
1 AAAAAGCCCAATAATTAA
11128290 AAAAA
1 AAAAA
11128295 TAAACAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 2 0.10
18 8 0.40
ACGTcount: A:0.69, C:0.13, G:0.08, T:0.10
Consensus pattern (18 bp):
AAAAAGCCCAATAATTAA
Found at i:11129962 original size:22 final size:23
Alignment explanation
Indices: 11129912--11129973 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
11129902 AGTTGGCATG
* *
11129912 TAAGCCCAGTTTAACTAGCACAA
1 TAAGCCCAGATTAGCTAGCACAA
11129935 TAAGCCCAGATTAGCTAGCAC-A
1 TAAGCCCAGATTAGCTAGCACAA
*
11129957 TAAGCCTAGATTAGCTA
1 TAAGCCCAGATTAGCTA
11129974 AAAAAGTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 17 0.47
23 19 0.53
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (23 bp):
TAAGCCCAGATTAGCTAGCACAA
Found at i:11130041 original size:203 final size:203
Alignment explanation
Indices: 11129692--11130069 Score: 684
Period size: 203 Copynumber: 1.9 Consensus size: 203
11129682 AGTCTCAAGC
*
11129692 CCAATTTAGTTGGCATGTAAGCCCAGTTTAACTAGCACAATAAACCCAGATTAGCTAGTACATAA
1 CCAATTTAGTTGGCATGTAAGCCCAGTTTAACTAGCACAATAAACCCAGATTAGCTAGCACATAA
*
11129757 GCCTAGATTAGCTAAAAAAGTATATACCCTTTTTATCTCTTGTAAGTGGTGAAGTCTTTTTGAAT
66 GCCTAGATTAGCTAAAAAAGTATATACCCTTTTTATCCCTTGTAAGTGGTGAAGTCTTTTTGAAT
*
11129822 CAGCAGAAATCCTTGGGTGCTAAATCAACCAATCTATTGAGACAATTTAGTTGGCATGAATAAAT
131 CAGCAGAAATCCTTGGGTGCTAAATCAACCAATCCATTGAGACAATTTAGTTGGCATGAATAAAT
11129887 TGTCTGTT
196 TGTCTGTT
*
11129895 CCAATTTAGTTGGCATGTAAGCCCAGTTTAACTAGCACAATAAGCCCAGATTAGCTAGCACATAA
1 CCAATTTAGTTGGCATGTAAGCCCAGTTTAACTAGCACAATAAACCCAGATTAGCTAGCACATAA
** *
11129960 GCCTAGATTAGCTAAAAAAGTATATACTTTTTTTATCCCTTTTAAGTGGTGAAGTCTTTTTGAAT
66 GCCTAGATTAGCTAAAAAAGTATATACCCTTTTTATCCCTTGTAAGTGGTGAAGTCTTTTTGAAT
*
11130025 CAGTAGAAATCCTTGGGTGCTAAATCAACCAATCCATTGAGACAA
131 CAGCAGAAATCCTTGGGTGCTAAATCAACCAATCCATTGAGACAA
11130070 AATTTTTACT
Statistics
Matches: 167, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
203 167 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (203 bp):
CCAATTTAGTTGGCATGTAAGCCCAGTTTAACTAGCACAATAAACCCAGATTAGCTAGCACATAA
GCCTAGATTAGCTAAAAAAGTATATACCCTTTTTATCCCTTGTAAGTGGTGAAGTCTTTTTGAAT
CAGCAGAAATCCTTGGGTGCTAAATCAACCAATCCATTGAGACAATTTAGTTGGCATGAATAAAT
TGTCTGTT
Found at i:11130365 original size:33 final size:30
Alignment explanation
Indices: 11130328--11130586 Score: 118
Period size: 33 Copynumber: 8.3 Consensus size: 30
11130318 AATCTTAAAT
11130328 CCAGTTTAGCTAGCCCCAAATGAAGTTTTAAGC
1 CCAGTTTAGCTAGCCCCAAA--AA-TTTTAAGC
* * *
11130361 CCAGTTTAACTAGCACCATAAAAATTTAAGC
1 CCAGTTTAGCTAGCCCCA-AAAATTTTAAGC
* *
11130392 CCATTTTATCTAGCACCC---AATTTTAAGC
1 CCAGTTTAGCTAGC-CCCAAAAATTTTAAGC
*
11130420 CCAATTTAGCTAGCCCCTAAAGAAAGTTTTAAGC
1 CCAGTTTAGCTAGCCCC--AA-AAA-TTTTAAGC
* *
11130454 CCATTTTA-CTACGCACC--AAATTTTAAGC
1 CCAGTTTAGCTA-GCCCCAAAAATTTTAAGC
** * * *
11130482 CCAG-TTAATTTGACCCTTAGAGAAATCTTAAGC
1 CCAGTTTAGCTAG-CCC-CA-A-AAATTTTAAGC
* * *
11130515 CCAATTTAACTGGCCCCAAATAAAGTTTTAAGC
1 CCAGTTTAGCTAGCCCC-AA-AAA-TTTTAAGC
* * * *
11130548 CTAGTTTAACTAGCACCATAAAATTTTAAGT
1 CCAGTTTAGCTAGCCCCA-AAAATTTTAAGC
*
11130579 CTAGTTTA
1 CCAGTTTA
11130587 TTTGGCACCC
Statistics
Matches: 177, Mismatches: 28, Indels: 44
0.71 0.11 0.18
Matches are distributed among these distances:
27 7 0.04
28 35 0.20
29 3 0.02
31 34 0.19
32 12 0.07
33 59 0.33
34 27 0.15
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (30 bp):
CCAGTTTAGCTAGCCCCAAAAATTTTAAGC
Found at i:11130427 original size:28 final size:29
Alignment explanation
Indices: 11130353--11130484 Score: 99
Period size: 28 Copynumber: 4.4 Consensus size: 29
11130343 CCAAATGAAG
*
11130353 TTTTAAGCCCAGTTTAACTAGCACCATAAAA
1 TTTTAAGCCCAATTTAACTAGCACC--AAAA
* * * *
11130384 ATTTAAGCCCATTTTATCTAGCACC-CAA
1 TTTTAAGCCCAATTTAACTAGCACCAAAA
* *
11130412 TTTTAAGCCCAATTTAGCTAGCCCCTAAAGAAA
1 TTTTAAGCCCAATTTAACTAGCACC---A-AAA
*
11130445 GTTTTAAGCCC-ATTTTACTACGCACC-AAA
1 -TTTTAAGCCCAATTTAACTA-GCACCAAAA
11130474 TTTTAAGCCCA
1 TTTTAAGCCCA
11130485 GTTAATTTGA
Statistics
Matches: 81, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
28 33 0.41
29 3 0.04
31 22 0.27
33 9 0.11
34 14 0.17
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (29 bp):
TTTTAAGCCCAATTTAACTAGCACCAAAA
Found at i:11130470 original size:62 final size:59
Alignment explanation
Indices: 11130353--11130484 Score: 169
Period size: 62 Copynumber: 2.2 Consensus size: 59
11130343 CCAAATGAAG
* *
11130353 TTTTAAGCCCAGTTTAACTAGCACCATAAAAATTTAAGCCCATTTTATCTAGCACCCAA
1 TTTTAAGCCCAATTTAACTAGCACCATAAAAATTTAAGCCCATTTTATCTAGCACCAAA
* *
11130412 TTTTAAGCCCAATTTAGCTAGC-CCCTAAAGAAAGTTTTAAGCCCATTTTA-CTACGCACCAAA
1 TTTTAAGCCCAATTTAACTAGCACCAT-AA-AAA--TTTAAGCCCATTTTATCTA-GCACCAAA
11130474 TTTTAAGCCCA
1 TTTTAAGCCCA
11130485 GTTAATTTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
58 3 0.05
59 22 0.34
60 3 0.05
61 3 0.05
62 33 0.52
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (59 bp):
TTTTAAGCCCAATTTAACTAGCACCATAAAAATTTAAGCCCATTTTATCTAGCACCAAA
Found at i:11130498 original size:187 final size:186
Alignment explanation
Indices: 11130305--11130679 Score: 486
Period size: 187 Copynumber: 2.0 Consensus size: 186
11130295 CGAGTTTATC
* * * *
11130305 TGACCCTCAAG-GAAATCTTAAATCCAGTTTAGCTAGCCCCAAATGAAGTTTTAAGCCCAGTTTA
1 TGACCCT-AAGAGAAATCTTAAACCCAATTTAACTAGCCCCAAATAAAGTTTTAAGCCCAGTTTA
* * *
11130369 ACTAGCACCATAAAAATTTAAGCCCATTTTATCTAGCACCCAATTTTAAGCCCAATTTAGCTAGC
65 ACTAGCACCATAAAAATTTAAGCCCAGTTTATCTAGCACCCAATCTTAAACCCAATTTAGCTAGC
* *
11130434 CC-CTAAAGAAAGTTTTAAGCCCATTTTACTACG-CACCAAATTTTAAGCCCAGTTAATT
130 CCTC-AAAGAAAGTTTTAAG-CCAGTTTACT-CGACACCAAATTTTAAGCCCAATTAATT
* * * *
11130492 TGACCCTTAGAGAAATCTTAAGCCCAATTTAACTGGCCCCAAATAAAGTTTTAAGCCTAGTTTAA
1 TGACCCTAAGAGAAATCTTAAACCCAATTTAACTAGCCCCAAATAAAGTTTTAAGCCCAGTTTAA
* * * * * * *
11130557 CTAGCACCATAAAATTTTAAGTCTAGTTTATTTGGCACCCAATCTTAAACTCAGTTTAGCTAGCC
66 CTAGCACCATAAAAATTTAAGCCCAGTTTATCTAGCACCCAATCTTAAACCCAATTTAGCTAGCC
* * *
11130622 CTCAAAGAAAGTTTTAAGCCAGTTTACTTGACACCTAATTTTAAGCCCAATTTATT
131 CTCAAAGAAAGTTTTAAGCCAGTTTACTCGACACCAAATTTTAAGCCCAATTAATT
11130678 TG
1 TG
11130680 GCGTTCAATG
Statistics
Matches: 162, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
185 1 0.01
186 35 0.22
187 125 0.77
188 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (186 bp):
TGACCCTAAGAGAAATCTTAAACCCAATTTAACTAGCCCCAAATAAAGTTTTAAGCCCAGTTTAA
CTAGCACCATAAAAATTTAAGCCCAGTTTATCTAGCACCCAATCTTAAACCCAATTTAGCTAGCC
CTCAAAGAAAGTTTTAAGCCAGTTTACTCGACACCAAATTTTAAGCCCAATTAATT
Found at i:11130719 original size:27 final size:27
Alignment explanation
Indices: 11130667--11130719 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
11130657 TAATTTTAAG
* *
11130667 CCCAATTTATTTGGCGTTCAATGAAAA
1 CCCAATTTATTTAGCGTTCAAAGAAAA
* *
11130694 CCCAATTTATTTAGTGTTTAAAGAAA
1 CCCAATTTATTTAGCGTTCAAAGAAA
11130720 GTTTTAAGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (27 bp):
CCCAATTTATTTAGCGTTCAAAGAAAA
Found at i:11130853 original size:33 final size:32
Alignment explanation
Indices: 11130816--11130889 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
11130806 ATTTTTAGCT
* *
11130816 TAGTTTATTTGGCTATCAATGAAAATTTAAGCC
1 TAGTTTATTTAGCCATCAATG-AAATTTAAGCC
** *
11130849 TAGTTTAGCTAGCCCTCAATGAAATTTAAGCC
1 TAGTTTATTTAGCCATCAATGAAATTTAAGCC
11130881 TAGTTTATT
1 TAGTTTATT
11130890 CAGCACTAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 18 0.53
33 16 0.47
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (32 bp):
TAGTTTATTTAGCCATCAATGAAATTTAAGCC
Found at i:11131045 original size:36 final size:37
Alignment explanation
Indices: 11130956--11131098 Score: 121
Period size: 36 Copynumber: 3.9 Consensus size: 37
11130946 TCACTGTATT
* * *
11130956 TGACTTGTGATGTTGTCTTGATTAATTCTTTATTTTT
1 TGACTTGTGGTGTTGTCTTGATTAATTCTTTATTATA
** * *
11130993 TGACTTACGGTATTGTCTTGGTT-ATTCTTTATTATA
1 TGACTTGTGGTGTTGTCTTGATTAATTCTTTATTATA
** * *
11131029 TGACTTGTGGTGTTGTCCCGA-TCATTCTTTATTCT-
1 TGACTTGTGGTGTTGTCTTGATTAATTCTTTATTATA
* * * *
11131064 TCAACTTGTGTTGTTGTCTAGATTAACTCTTTATT
1 T-GACTTGTGGTGTTGTCTTGATTAATTCTTTATT
11131099 TTTTGATTCG
Statistics
Matches: 83, Mismatches: 20, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
35 2 0.02
36 53 0.64
37 28 0.34
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.53
Consensus pattern (37 bp):
TGACTTGTGGTGTTGTCTTGATTAATTCTTTATTATA
Done.