Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 63 of 129
Found at i:12081278 original size:59 final size:59
Alignment explanation
Indices: 12081207--12081386 Score: 233
Period size: 58 Copynumber: 3.1 Consensus size: 59
12081197 AATTTTCTTT
* * *
12081207 AATTTTCCTTGAAAATAAGTTTTCAGAAAAAATATTTTTTAGGAAAAGTTGAAAGTATC
1 AATTTTCTTTGAAAATAAGTTTTCAGAAAAAATATTTTTGAGGAAAAATTGAAAGTATC
* * * *
12081266 AATTTTCTTTGAAAATAAGTTTTC-TAAAAAATATTTTCGAGAAAAAATTCAAAGTATC
1 AATTTTCTTTGAAAATAAGTTTTCAGAAAAAATATTTTTGAGGAAAAATTGAAAGTATC
* * *
12081324 AATTTTCTTTGAAATTAAAG-TTTCAG-AAAAATA-TTTTGGGGAAAAATTGAAAGTATA
1 AATTTTCTTTGAAAAT-AAGTTTTCAGAAAAAATATTTTTGAGGAAAAATTGAAAGTATC
12081381 AATTTT
1 AATTTT
12081387 TCTTGTACAA
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
57 25 0.24
58 54 0.51
59 26 0.25
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.38
Consensus pattern (59 bp):
AATTTTCTTTGAAAATAAGTTTTCAGAAAAAATATTTTTGAGGAAAAATTGAAAGTATC
Found at i:12084488 original size:22 final size:23
Alignment explanation
Indices: 12084442--12084488 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
12084432 GTTCGAAAAG
12084442 AAATTTTCAATTGGACACTCCCA
1 AAATTTTCAATTGGACACTCCCA
*
12084465 AAATTTTCTAA-TGGATA-TCCCA
1 AAATTTTC-AATTGGACACTCCCA
12084487 AA
1 AA
12084489 GATTGAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 13 0.59
24 2 0.09
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (23 bp):
AAATTTTCAATTGGACACTCCCA
Found at i:12088760 original size:28 final size:28
Alignment explanation
Indices: 12088722--12088778 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
12088712 ACATCACTTC
12088722 TTTTATTTTTTG-CATATTTTCTTT-TATT
1 TTTTATTTTTTGTCA-ATTTT-TTTATATT
*
12088750 TTTTCTTTTTTGTCAATTTTTTTATATT
1 TTTTATTTTTTGTCAATTTTTTTATATT
12088778 T
1 T
12088779 AATATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 3 0.12
28 21 0.81
29 2 0.08
ACGTcount: A:0.14, C:0.07, G:0.04, T:0.75
Consensus pattern (28 bp):
TTTTATTTTTTGTCAATTTTTTTATATT
Found at i:12089300 original size:17 final size:16
Alignment explanation
Indices: 12089277--12089314 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
12089267 TACGAGTTTC
*
12089277 ATTTTTTT-TTATTTT
1 ATTTTTTTACTATTTT
12089292 GATTTTTTTACTATTTT
1 -ATTTTTTTACTATTTT
12089309 ATTTTT
1 ATTTTT
12089315 AAAATTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (16 bp):
ATTTTTTTACTATTTT
Found at i:12089406 original size:8 final size:7
Alignment explanation
Indices: 12089380--12089404 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
12089370 GTATCATCTT
12089380 TTTTACA
1 TTTTACA
12089387 TTTTACA
1 TTTTACA
12089394 TTTTACA
1 TTTTACA
12089401 TTTT
1 TTTT
12089405 TAATTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTACA
Found at i:12089790 original size:10 final size:10
Alignment explanation
Indices: 12089766--12089795 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
12089756 TATTTTATCA
12089766 ATTAAAATA-
1 ATTAAAATAT
12089775 ATTAAAATAT
1 ATTAAAATAT
12089785 ATTAAAATAT
1 ATTAAAATAT
12089795 A
1 A
12089796 AAAAGTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:12091962 original size:11 final size:11
Alignment explanation
Indices: 12091946--12091982 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
12091936 AAATTTAAAT
12091946 TTAAATACATA
1 TTAAATACATA
*
12091957 TTAAATACAAA
1 TTAAATACATA
*
12091968 TTAAATAAATA
1 TTAAATACATA
12091979 TTAA
1 TTAA
12091983 GTTTTTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
TTAAATACATA
Found at i:12092092 original size:10 final size:10
Alignment explanation
Indices: 12092069--12092125 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
12092059 AATTTATAAT
*
12092069 TATTTTAATCA
1 TATTTTTAT-A
12092080 TATTTTTATA
1 TATTTTTATA
*
12092090 TATATTTATA
1 TATTTTTATA
* **
12092100 TTAATCATATA
1 -TATTTTTATA
12092111 TATTTTTATA
1 TATTTTTATA
12092121 TATTT
1 TATTT
12092126 AATTAATTGT
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
10 22 0.61
11 14 0.39
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (10 bp):
TATTTTTATA
Found at i:12092101 original size:29 final size:29
Alignment explanation
Indices: 12092063--12092164 Score: 111
Period size: 28 Copynumber: 3.6 Consensus size: 29
12092053 ATAAATAATT
* *
12092063 TATAATTATTTTAATCATAT-T-TTTATA
1 TATATTTATATTAATCATATATATTTATA
*
12092090 TATATTTATATTAATCATATATATTTTTA
1 TATATTTATATTAATCATATATATTTATA
** *
12092119 TATATTTA-ATTAATTGTATTTATTTATA
1 TATATTTATATTAATCATATATATTTATA
* *
12092147 TATATTAATATTATTCAT
1 TATATTTATATTAATCAT
12092165 GTTTATTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
27 18 0.30
28 24 0.39
29 19 0.31
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (29 bp):
TATATTTATATTAATCATATATATTTATA
Found at i:12092157 original size:10 final size:10
Alignment explanation
Indices: 12092079--12092332 Score: 73
Period size: 10 Copynumber: 26.6 Consensus size: 10
12092069 TATTTTAATC
*
12092079 ATATTTTTAT
1 ATATATTTAT
12092089 ATATATTTAT
1 ATATATTTAT
* *
12092099 AT-TAATCAT
1 ATATATTTAT
*
12092108 ATATATTTTT
1 ATATATTTAT
12092118 ATATATTTA-
1 ATATATTTAT
* *
12092127 AT-TAATTGT
1 ATATATTTAT
*
12092136 ATTTATTTAT
1 ATATATTTAT
*
12092146 ATATATTAAT
1 ATATATTTAT
*
12092156 AT-TATTCAT
1 ATATATTTAT
* * * *
12092165 GTTTATTCACG
1 ATATATTTA-T
12092176 ATATATTTAAAT
1 ATATATTT--AT
* *
12092188 AAATAAATTAT
1 ATAT-ATTTAT
* *
12092199 ATATATATGT
1 ATATATTTAT
12092209 -TA-ATTATAT
1 ATATATT-TAT
**
12092218 ATATCACGTAT
1 ATAT-ATTTAT
*
12092229 A-ATATATAT
1 ATATATTTAT
*
12092238 ATATA-TTAA
1 ATATATTTAT
*
12092247 ATATA-TCAT
1 ATATATTTAT
12092256 ATTAATATTTA-
1 A-T-ATATTTAT
*
12092267 A-AT-TTTAA
1 ATATATTTAT
12092275 ATATATTT-T
1 ATATATTTAT
12092284 ATA-ATTTAT
1 ATATATTTAT
12092293 AT-TATATT-T
1 ATATAT-TTAT
12092302 ATAT-TTTA-
1 ATATATTTAT
12092310 ATA-ATTTAT
1 ATATATTTAT
12092319 AT-TA-TTAT
1 ATATATTTAT
12092327 ATATAT
1 ATATAT
12092333 AAAATATAAT
Statistics
Matches: 177, Mismatches: 38, Indels: 58
0.65 0.14 0.21
Matches are distributed among these distances:
7 4 0.02
8 28 0.16
9 56 0.32
10 61 0.34
11 18 0.10
12 6 0.03
13 4 0.02
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (10 bp):
ATATATTTAT
Found at i:12092262 original size:13 final size:13
Alignment explanation
Indices: 12092176--12092340 Score: 64
Period size: 13 Copynumber: 13.2 Consensus size: 13
12092166 TTTATTCACG
12092176 ATATAT-TTAAAT
1 ATATATATTAAAT
* * *
12092188 AAATAAATTATAT
1 ATATATATTAAAT
* *
12092201 ATATATGTTAATT
1 ATATATATTAAAT
* **
12092214 ATATATATCACGT
1 ATATATATTAAAT
12092227 ATA-ATA-T--AT
1 ATATATATTAAAT
12092236 ATATATATTAAAT
1 ATATATATTAAAT
12092249 ATATCATATTAATAT
1 ATAT-ATATTAA-AT
* * *
12092264 TTAAATTTTAAAT
1 ATATATATTAAAT
12092277 ATAT-T-TTATAAT
1 ATATATATTA-AAT
*
12092289 -T-TATATTATAT
1 ATATATATTAAAT
* *
12092300 TTATAT-TTTAAT
1 ATATATATTAAAT
* *
12092312 AATTTATATT-ATT
1 -ATATATATTAAAT
*
12092325 ATATATATAAAAT
1 ATATATATTAAAT
12092338 ATA
1 ATA
12092341 ATAAAAAATA
Statistics
Matches: 110, Mismatches: 28, Indels: 29
0.66 0.17 0.17
Matches are distributed among these distances:
9 4 0.04
10 4 0.04
11 8 0.07
12 26 0.24
13 49 0.45
14 15 0.14
15 4 0.04
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (13 bp):
ATATATATTAAAT
Found at i:12092291 original size:18 final size:18
Alignment explanation
Indices: 12092260--12092310 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
12092250 TATCATATTA
12092260 ATATTTA-AATTTTAAA-T
1 ATATTTATAA-TTTAAATT
*
12092277 ATATTTTATAATTTATATT
1 ATA-TTTATAATTTAAATT
*
12092296 ATATTTATATTTTAA
1 ATATTTATAATTTAA
12092311 TAATTTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 3 0.11
18 19 0.68
19 6 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATATTTATAATTTAAATT
Found at i:12092301 original size:11 final size:12
Alignment explanation
Indices: 12092282--12092323 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 12
12092272 TAAATATATT
12092282 TTATAATTTATA
1 TTATAATTTATA
12092294 TTAT-ATTTATA
1 TTATAATTTATA
12092305 TTTTAATAATTTATA
1 --TT-ATAATTTATA
12092320 TTAT
1 TTAT
12092324 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
11 7 0.27
12 6 0.23
13 4 0.15
14 2 0.08
15 7 0.27
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATAATTTATA
Found at i:12092318 original size:26 final size:26
Alignment explanation
Indices: 12092262--12092332 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
12092252 TCATATTAAT
* *
12092262 ATTTAAATT-TTAAATATATTTTATA
1 ATTTATATTATTATATATATTTTATA
*
12092287 ATTTATATTA-TATTTATATTTTAATA
1 ATTTATATTATTATATATATTTT-ATA
12092313 ATTTATATTATTATATATAT
1 ATTTATATTATTATATATAT
12092333 AAAATATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 18 0.46
26 13 0.33
27 8 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (26 bp):
ATTTATATTATTATATATATTTTATA
Found at i:12092326 original size:23 final size:25
Alignment explanation
Indices: 12092276--12092332 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
12092266 AAATTTTAAA
12092276 TATATTTTATAATTTATATTATATT
1 TATATTTTATAATTTATATTATATT
*
12092301 TATATTTTAATAATTTATATTATTATA
1 TATATTTT-ATAATTTATATTA-TATT
12092328 TATAT
1 TATAT
12092333 AAAATATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 8 0.28
26 13 0.45
27 8 0.28
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TATATTTTATAATTTATATTATATT
Found at i:12092665 original size:18 final size:16
Alignment explanation
Indices: 12092642--12092680 Score: 60
Period size: 18 Copynumber: 2.3 Consensus size: 16
12092632 TTATGATTAA
12092642 TATTTATTTAAATTATTT
1 TATTTATTTAAA--ATTT
12092660 TATTTATTTAAAATTT
1 TATTTATTTAAAATTT
12092676 TATTT
1 TATTT
12092681 GTTTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 9 0.43
18 12 0.57
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTTATTTAAAATTT
Found at i:12093442 original size:16 final size:16
Alignment explanation
Indices: 12093417--12093468 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
12093407 TAATTTAATA
*
12093417 TTAAATTTATTTTGAGT
1 TTAAA-TTATTTTGAAT
*
12093434 TTAAATTATTTT-AAA
1 TTAAATTATTTTGAAT
12093449 TTAATATTATTTTGAAT
1 TTAA-ATTATTTTGAAT
12093466 TTA
1 TTA
12093469 GATTGTTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 5 0.17
16 15 0.50
17 10 0.33
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
TTAAATTATTTTGAAT
Found at i:12093459 original size:32 final size:33
Alignment explanation
Indices: 12093405--12093468 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
12093395 ACAAGTTCAT
*
12093405 ATTAATTTAATATTAAATTTATTTTGAGTTTAA
1 ATTAATTTAATATTAAATTTATTTTGAATTTAA
*
12093438 ATTATTTTAA-ATT-AATATTATTTTGAATTTA
1 ATTAATTTAATATTAAAT-TTATTTTGAATTTA
12093469 GATTGTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 3 0.11
32 16 0.57
33 9 0.32
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (33 bp):
ATTAATTTAATATTAAATTTATTTTGAATTTAA
Found at i:12094684 original size:20 final size:19
Alignment explanation
Indices: 12094655--12094701 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
12094645 ATTAAAATTT
12094655 TATTAAAAAAATAATTTTTA
1 TATT-AAAAAATAATTTTTA
* *
12094675 TATTATAAAATAATTTTGA
1 TATTAAAAAATAATTTTTA
12094694 T-TTAAAAA
1 TATTAAAAA
12094702 TCGATTTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 6 0.25
19 14 0.58
20 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TATTAAAAAATAATTTTTA
Found at i:12097450 original size:23 final size:20
Alignment explanation
Indices: 12097406--12097450 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
12097396 TTTTTTTTGC
*
12097406 TTGTTTTTTTTTTTGTTTTA
1 TTGTTTTTTTTTTTATTTTA
12097426 TTGTCTTTTTTTATTTATTTATA
1 TTGT-TTTTTTT-TTTATTT-TA
12097449 TT
1 TT
12097451 TATATTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.19
21 7 0.33
22 6 0.29
23 4 0.19
ACGTcount: A:0.11, C:0.02, G:0.07, T:0.80
Consensus pattern (20 bp):
TTGTTTTTTTTTTTATTTTA
Found at i:12097856 original size:103 final size:104
Alignment explanation
Indices: 12097649--12098058 Score: 406
Period size: 104 Copynumber: 4.0 Consensus size: 104
12097639 TATTTGAAGA
* * * * * * * *
12097649 TCTTATAAATTTCAAAATCTTTGAATGCT-CATCGTA-TAAGAGATGTTAAAATTTTGAAATTTT
1 TCTTACAAATCTCAAAATCTTTGAATG-TACCTCATAGT-AGAGGTGTTAAAACTTTAAAAATTT
12097712 AAAATGTTTTGCTCAGAA-GTCTTATAGATTATGCTTGGAGG
64 AAAATGTTTTGCTCA-AAGGTCTTATAGATTATGCTTGGAGG
* *
12097753 TTTTACAAATCTCAAAATCTTTGAATGTACCTCGTAGTAGAGGCT-TTAAAAC-TTAAAAATTTA
1 TCTTACAAATCTCAAAATCTTTGAATGTACCTCATAGTAGAGG-TGTTAAAACTTTAAAAATTTA
* * *
12097816 AAATGTCTTGCCCAAAGGTCTTATAGATTATGCTCGGAGG
65 AAATGTTTTGCTCAAAGGTCTTATAGATTATGCTTGGAGG
* *
12097856 TCTTACAAATCTCAAAATCTTTGAA--TACTCTTTATAGTAGAGGTGTTGAAACTTTAAAAATTT
1 TCTTACAAATCTCAAAATCTTTGAATGTAC-C-TCATAGTAGAGGTGTTAAAACTTTAAAAATTT
* * * *
12097919 AAAATGTTTTGCTTAGAGGTCTTATAGATTATGCTTGAAAG
64 AAAATGTTTTGCTCAAAGGTCTTATAGATTATGCTTGGAGG
* * * * * * ** * * *
12097960 TCTTACAAATATTAAAATATTTGGATGTTCCTCATAGTAGAAGCATTGAAATTTTGAAAATTT-A
1 TCTTACAAATCTCAAAATCTTTGAATGTACCTCATAGTAGAGGTGTTAAAACTTTAAAAATTTAA
* *
12098024 AATTTTTTGGCTGAAA-GTCTTATAGATTATGCTTG
66 AATGTTTT-GCTCAAAGGTCTTATAGATTATGCTTG
12098059 AAAATCTTAA
Statistics
Matches: 259, Mismatches: 36, Indels: 23
0.81 0.11 0.07
Matches are distributed among these distances:
101 3 0.01
102 4 0.02
103 111 0.43
104 136 0.53
105 3 0.01
106 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (104 bp):
TCTTACAAATCTCAAAATCTTTGAATGTACCTCATAGTAGAGGTGTTAAAACTTTAAAAATTTAA
AATGTTTTGCTCAAAGGTCTTATAGATTATGCTTGGAGG
Found at i:12098046 original size:207 final size:207
Alignment explanation
Indices: 12097649--12098056 Score: 491
Period size: 207 Copynumber: 2.0 Consensus size: 207
12097639 TATTTGAAGA
* * * * * *
12097649 TCTTATAAATTTCAAAATCTTTGAATGCTCATCGTATAAGAGATGTTAAAATTTTGAAATTTTAA
1 TCTTACAAATCTCAAAATCTTTGAATACTCATCGTATAAGAGATGTTAAAACTTTAAAAATTTAA
* * * * *
12097714 AATGTTTTGCTCAGAAGTCTTATAGATTATGCTTGGAGGTTTTACAAATCTCAAAATCTTTGAAT
66 AATGTTTTGCTCAGAAGTCTTATAGATTATGCTTGAAAGTCTTACAAATATCAAAATATTTGAAT
* * *
12097779 GTACCTCGTAGTAGAGGCTTTAAAACTTAAAAATTTAAAATGTCTTGCCCAAAGGTCTTATAGAT
131 GTACCTCATAGTAGAAGCTTGAAAACTTAAAAATTTAAAATGTCTTGCCCAAAGGTCTTATAGAT
12097844 TATGCTCGGAGG
196 TATGCTCGGAGG
* * *
12097856 TCTTACAAATCTCAAAATCTTTGAATACTC-T-TTATAGTAGAGGTGTTGAAACTTTAAAAATTT
1 TCTTACAAATCTCAAAATCTTTGAATACTCATCGTATA--AGAGATGTTAAAACTTTAAAAATTT
* * * *
12097919 AAAATGTTTTGCTTAGAGGTCTTATAGATTATGCTTGAAAGTCTTACAAATATTAAAATATTTGG
64 AAAATGTTTTGCTCAGAAGTCTTATAGATTATGCTTGAAAGTCTTACAAATATCAAAATATTTGA
* ** * * * **
12097984 ATGTTCCTCATAGTAGAAGCATTGAAATTTTGAAAATTT-AAATTTTTTGGCTGAAA-GTCTTAT
129 ATGTACCTCATAGTAGAAGC-TTGAAAACTTAAAAATTTAAAATGTCTT-GCCCAAAGGTCTTAT
12098047 AGATTATGCT
192 AGATTATGCT
12098057 TGAAAATCTT
Statistics
Matches: 168, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
205 4 0.02
206 1 0.01
207 144 0.86
208 19 0.11
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (207 bp):
TCTTACAAATCTCAAAATCTTTGAATACTCATCGTATAAGAGATGTTAAAACTTTAAAAATTTAA
AATGTTTTGCTCAGAAGTCTTATAGATTATGCTTGAAAGTCTTACAAATATCAAAATATTTGAAT
GTACCTCATAGTAGAAGCTTGAAAACTTAAAAATTTAAAATGTCTTGCCCAAAGGTCTTATAGAT
TATGCTCGGAGG
Found at i:12098066 original size:22 final size:22
Alignment explanation
Indices: 12098035--12098077 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
12098025 ATTTTTTGGC
* *
12098035 TGAAAGTCTTATAGATTATGCT
1 TGAAAATCTTAAAGATTATGCT
12098057 TGAAAATCTTAAAGATTATGC
1 TGAAAATCTTAAAGATTATGC
12098078 CAGGAGGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (22 bp):
TGAAAATCTTAAAGATTATGCT
Found at i:12098769 original size:26 final size:26
Alignment explanation
Indices: 12098734--12098788 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
12098724 GCAATGCTGT
* *
12098734 AAATGTAAATGCCTTTCTTATGATGC
1 AAATGCAAATGCCTTGCTTATGATGC
*
12098760 AAATGCAAATGCCTTGGTTATGATGC
1 AAATGCAAATGCCTTGCTTATGATGC
12098786 AAA
1 AAA
12098789 CGATGTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33
Consensus pattern (26 bp):
AAATGCAAATGCCTTGCTTATGATGC
Found at i:12098879 original size:32 final size:32
Alignment explanation
Indices: 12098843--12098904 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
12098833 GAATGTAAGT
*
12098843 GATGCAAATGCGAAAGTCTTTTTCATGATGTA
1 GATGCAAATGCGAAAGTCTTTCTCATGATGTA
* * * *
12098875 GATGCGAATGTGAATGTGTTTCTCATGATG
1 GATGCAAATGCGAAAGTCTTTCTCATGATG
12098905 GAAGCGTGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.35
Consensus pattern (32 bp):
GATGCAAATGCGAAAGTCTTTCTCATGATGTA
Found at i:12100515 original size:20 final size:19
Alignment explanation
Indices: 12100475--12100516 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
12100465 GAGTTATATG
*
12100475 TCTTTTTTTCTTTGCTCTT
1 TCTTTTTTTCTTTGCTATT
12100494 TCTTTTTTGTC-TTGCTTATT
1 TCTTTTTT-TCTTTGC-TATT
12100514 TCT
1 TCT
12100517 AAAAATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.02, C:0.19, G:0.07, T:0.71
Consensus pattern (19 bp):
TCTTTTTTTCTTTGCTATT
Found at i:12103907 original size:20 final size:19
Alignment explanation
Indices: 12103869--12103907 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
12103859 ATTCATAAAA
**
12103869 ATTTCAAAAGTTTTTATTT
1 ATTTCAAAAGTTTCAATTT
12103888 ATTTCTAAAAGTTTCAATTT
1 ATTTC-AAAAGTTTCAATTT
12103908 TACACATCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (19 bp):
ATTTCAAAAGTTTCAATTT
Found at i:12109736 original size:19 final size:19
Alignment explanation
Indices: 12109699--12109736 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
12109689 TTAATACGAT
12109699 AATCTTTAAAATGAAATAAC
1 AATCTTTAAAA-GAAATAAC
12109719 AATCTTTATAAA-AAATAA
1 AATCTTTA-AAAGAAATAA
12109737 TTATTAGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 8 0.47
21 3 0.18
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (19 bp):
AATCTTTAAAAGAAATAAC
Found at i:12110391 original size:14 final size:14
Alignment explanation
Indices: 12110374--12110450 Score: 73
Period size: 14 Copynumber: 5.2 Consensus size: 14
12110364 ATGTGGTTTG
* *
12110374 GGGTTTTAATTTAA
1 GGGTTTGAATTTTA
*
12110388 GGGTTTGGATTTTA
1 GGGTTTGAATTTTA
* *
12110402 GGGATTTTAGATTTTG
1 GGG-TTTGA-ATTTTA
12110418 GGGTTTGAATTTTA
1 GGGTTTGAATTTTA
12110432 GGGGTTTCGAATTTTA
1 -GGGTTT-GAATTTTA
12110448 GGG
1 GGG
12110451 AGTTTGGATT
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
14 19 0.37
15 16 0.31
16 16 0.31
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.47
Consensus pattern (14 bp):
GGGTTTGAATTTTA
Found at i:12110437 original size:15 final size:15
Alignment explanation
Indices: 12110373--12110461 Score: 83
Period size: 15 Copynumber: 5.9 Consensus size: 15
12110363 TATGTGGTTT
*
12110373 GGGGTTTTAA-TTTA
1 GGGGTTTGAATTTTA
* *
12110387 AGGGTTTGGATTTTA
1 GGGGTTTGAATTTTA
* *
12110402 GGGATTTTAGATTTT-
1 GGGGTTTGA-ATTTTA
12110417 GGGGTTTGAATTTTA
1 GGGGTTTGAATTTTA
12110432 GGGGTTTCGAATTTTA
1 GGGGTTT-GAATTTTA
*
12110448 GGGAGTTTGGATTT
1 GGG-GTTTGAATTT
12110462 AAGAGATTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
14 12 0.20
15 23 0.38
16 21 0.35
17 4 0.07
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (15 bp):
GGGGTTTGAATTTTA
Found at i:12110495 original size:16 final size:15
Alignment explanation
Indices: 12110383--12110503 Score: 68
Period size: 16 Copynumber: 7.7 Consensus size: 15
12110373 GGGGTTTTAA
12110383 TTTAAGGGTTTGGAT
1 TTTAAGGGTTTGGAT
*
12110398 TTT-AGGGATTTTAGAT
1 TTTAAGGG--TTTGGAT
* *
12110414 TTT-GGGGTTTGAAT
1 TTTAAGGGTTTGGAT
* *
12110428 TTTAGGGGTTTCGAAT
1 TTTAAGGGTTT-GGAT
*
12110444 TTTAGGGAGTTTGGA-
1 TTTAAGG-GTTTGGAT
* *
12110459 TTTAAGAGATTTTAGATT
1 TTTAAG-G-GTTTGGA-T
12110477 TTTAAGGGTTTCGGAT
1 TTTAAGGGTTT-GGAT
*
12110493 TTTAAGAGTTT
1 TTTAAGGGTTT
12110504 TAGAACCCTA
Statistics
Matches: 86, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
14 12 0.14
15 15 0.17
16 46 0.53
17 7 0.08
18 6 0.07
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTAAGGGTTTGGAT
Found at i:12111916 original size:20 final size:17
Alignment explanation
Indices: 12111879--12111954 Score: 68
Period size: 18 Copynumber: 4.3 Consensus size: 17
12111869 TTTTCTATTT
12111879 TTTGTTCTT-TTTTTTTG
1 TTTGTT-TTATTTTTTTG
12111896 TTTGTTTGTATTTGGTTTTG
1 TTTGTTT-TATTT--TTTTG
12111916 TTT-TTTTATTTTTTTG
1 TTTGTTTTATTTTTTTG
*
12111932 TTTGTATTT-TGTATTTTG
1 TTTGT-TTTAT-TTTTTTG
12111950 TTTGT
1 TTTGT
12111955 ATTTCATATT
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
16 9 0.18
17 9 0.18
18 22 0.43
19 3 0.06
20 8 0.16
ACGTcount: A:0.05, C:0.01, G:0.16, T:0.78
Consensus pattern (17 bp):
TTTGTTTTATTTTTTTG
Found at i:12111932 original size:32 final size:33
Alignment explanation
Indices: 12111878--12111940 Score: 103
Period size: 32 Copynumber: 1.9 Consensus size: 33
12111868 ATTTTCTATT
12111878 TTTTGTTCTTTTTTTTTGTTTGTTTGTATTTGG
1 TTTTGTTCTTTTTTTTTGTTTGTTTGTATTTGG
12111911 TTTTGTT-TTTTTATTTT-TTTGTTTGTATTT
1 TTTTGTTCTTTTT-TTTTGTTTGTTTGTATTT
12111941 TGTATTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.05, C:0.02, G:0.14, T:0.79
Consensus pattern (33 bp):
TTTTGTTCTTTTTTTTTGTTTGTTTGTATTTGG
Found at i:12111943 original size:39 final size:41
Alignment explanation
Indices: 12111876--12111952 Score: 104
Period size: 39 Copynumber: 1.9 Consensus size: 41
12111866 CGATTTTCTA
* * *
12111876 TTTTTTGTTCTTTTTTTTTGTTTGTTTGTATTTGGTTTTGT
1 TTTTTTATTCTTTTTGTTTGTATGTTTGTATTTGGTTTTGT
*
12111917 TTTTTTATT-TTTTTGTTTGTAT-TTTGTATTTTGTTT
1 TTTTTTATTCTTTTTGTTTGTATGTTTGTATTTGGTTT
12111953 GTATTTCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 13 0.41
40 11 0.34
41 8 0.25
ACGTcount: A:0.05, C:0.01, G:0.14, T:0.79
Consensus pattern (41 bp):
TTTTTTATTCTTTTTGTTTGTATGTTTGTATTTGGTTTTGT
Found at i:12111950 original size:18 final size:18
Alignment explanation
Indices: 12111927--12111970 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
12111917 TTTTTTATTT
**
12111927 TTTTGTTTGTATTTTGTA
1 TTTTGTTTGTATTTCATA
12111945 TTTTGTTTGTATTTCATA
1 TTTTGTTTGTATTTCATA
12111963 TTTTGTTT
1 TTTTGTTT
12111971 TTAATAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.11, C:0.02, G:0.14, T:0.73
Consensus pattern (18 bp):
TTTTGTTTGTATTTCATA
Found at i:12111958 original size:32 final size:33
Alignment explanation
Indices: 12111891--12111958 Score: 86
Period size: 32 Copynumber: 2.1 Consensus size: 33
12111881 TGTTCTTTTT
* *
12111891 TTTTGTTTGTTTGTATTTGGTTTTGTTTTTTTA
1 TTTTGTTTGTTTGTATTTGGTTTTGTGTTTGTA
*
12111924 TTTT-TTTGTTTGTATTTTGTATTT-TGTTTGTA
1 TTTTGTTTGTTTGTATTTGGT-TTTGTGTTTGTA
12111956 TTT
1 TTT
12111959 CATATTTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 24 0.77
33 7 0.23
ACGTcount: A:0.07, C:0.00, G:0.16, T:0.76
Consensus pattern (33 bp):
TTTTGTTTGTTTGTATTTGGTTTTGTGTTTGTA
Found at i:12111965 original size:39 final size:39
Alignment explanation
Indices: 12111886--12111972 Score: 97
Period size: 39 Copynumber: 2.2 Consensus size: 39
12111876 TTTTTTGTTC
* **
12111886 TTTTTTTTTGTTTGTTTGTATTTGGTTTTGTTTTTTTAT
1 TTTTTTTTTGTATGTTTGTATTTGGTTTTGTTTTCATAT
*
12111925 TTTTTTGTTTGTAT-TTTGTATTTTG-TTTGTATTTCATAT
1 TTTTTT-TTTGTATGTTTGTATTTGGTTTTGT-TTTCATAT
*
12111964 TTTGTTTTT
1 TTTTTTTTT
12111973 AATAATATTG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
38 8 0.20
39 27 0.66
40 6 0.15
ACGTcount: A:0.08, C:0.01, G:0.14, T:0.77
Consensus pattern (39 bp):
TTTTTTTTTGTATGTTTGTATTTGGTTTTGTTTTCATAT
Found at i:12112234 original size:22 final size:22
Alignment explanation
Indices: 12112209--12112260 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
12112199 TTATGCTCGA
*
12112209 AGGTCTT-AGAAATCATGCCCGT
1 AGGTCTTAAG-AATCATGCCCGG
*
12112231 AGGTCTTAAGAATCATGTCCGG
1 AGGTCTTAAGAATCATGCCCGG
12112253 AGGTCTTA
1 AGGTCTTA
12112261 CAAAATCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 25 0.93
23 2 0.07
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (22 bp):
AGGTCTTAAGAATCATGCCCGG
Found at i:12112383 original size:110 final size:110
Alignment explanation
Indices: 12112231--12112444 Score: 313
Period size: 110 Copynumber: 1.9 Consensus size: 110
12112221 TCATGCCCGT
* * *
12112231 AGGTCTTAAGAATCATGTCCGGAGGTCTTACAAAATCAACTGGGATAACATCGCAAGTCAAAAGA
1 AGGTCTTAAAAATCATGACCGAAGGTCTTACAAAATCAACTGGGATAACATCGCAAGTCAAAAGA
* **
12112296 TAAGGAATCGATCGGGATAACACCGCGAATTGAAATTATATCCAG
66 TAAAGAATCGATCGGGATAACACCGCGAATCAAAATTATATCCAG
* * * *
12112341 AGGTCTTAAAAATCAT-ACCTGAAGGTCTTACAGAATCGACTGGGATAACATCGTAAGTCGAAAG
1 AGGTCTTAAAAATCATGACC-GAAGGTCTTACAAAATCAACTGGGATAACATCGCAAGTCAAAAG
*
12112405 ATAAAGAATCGATCGGGATAACACCGTGAATCAAAATTAT
65 ATAAAGAATCGATCGGGATAACACCGCGAATCAAAATTAT
12112445 GCCTGGAGGT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
109 2 0.02
110 90 0.98
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.22
Consensus pattern (110 bp):
AGGTCTTAAAAATCATGACCGAAGGTCTTACAAAATCAACTGGGATAACATCGCAAGTCAAAAGA
TAAAGAATCGATCGGGATAACACCGCGAATCAAAATTATATCCAG
Found at i:12112502 original size:87 final size:88
Alignment explanation
Indices: 12112349--12112545 Score: 265
Period size: 87 Copynumber: 2.2 Consensus size: 88
12112339 AGAGGTCTTA
* * *
12112349 AAAATCATACCTGAAGGTCTTACAGAATCGACTGGGATAACATCGTAAGTCGAAAGATAAAGAAT
1 AAAATTATACCTGGAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCGAAAGATAAAGAAT
*
12112414 CGATCGGGATAACACCGTGAATC
66 CGATCGGGATAACACCGCGAATC
* * *
12112437 AAAATTATGCCTGGAGGTCTTACATAATCGA-TTGGATAACA-CTGCAAGTCGAAAGAT-AAGAA
1 AAAATTATACCTGGAGGTCTTACAGAATCGACTGGGATAACATC-GCAAGTCGAAAGATAAAG-A
12112499 ATCGATCGGGATAACACCGCGAATC
64 ATCGATCGGGATAACACCGCGAATC
* **
12112524 GAAATTATACCCAGAGGTCTTA
1 AAAATTATACCTGGAGGTCTTA
12112546 AAAATCATGC
Statistics
Matches: 96, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
86 4 0.04
87 65 0.68
88 27 0.28
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (88 bp):
AAAATTATACCTGGAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCGAAAGATAAAGAAT
CGATCGGGATAACACCGCGAATC
Found at i:12112511 original size:197 final size:195
Alignment explanation
Indices: 12112250--12113158 Score: 709
Period size: 197 Copynumber: 4.6 Consensus size: 195
12112240 GAATCATGTC
* * * * *
12112250 CGGAGGTCTTACAAAATCAACTGGGATAACATCGCAAGTCAAAAGATAAGGAATCGATCGGGATA
1 CGGAGGTCTTACAAAATCGA-TTGGATAACAT-GCAAGTCGAAAGATAAGAAATCGATCAGGATA
* * * *
12112315 ACACCGCGAATTGAAATTATATCCAGAGGTCTTAAAAATCATACCTGAAGGTCTTACAGAATCGA
64 ACACAGCGAATCGAAATTATACCCAGAGGTCTTAAAAATCATGCCTGAAGGTCTTACAGAATCGA
* **
12112380 CTGGGATAACATCGTA-AGTCGAAAGATAAAGAATCGATCGGGATAACACCGTGAATCAAAATTA
129 CTGGAATAACATC--ACAGTCGAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAAATTA
12112444 TGC-
192 TGCT
* *
12112447 CTGGAGGTCTTACATAATCGATTGGATAACACTGCAAGTCGAAAGATAAGAAATCGATCGGGATA
1 C-GGAGGTCTTACAAAATCGATTGGATAACA-TGCAAGTCGAAAGATAAGAAATCGATCAGGATA
* * *
12112512 ACACCGCGAATCGAAATTATACCCAGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCGA
64 ACACAGCGAATCGAAATTATACCCAGAGGTCTTAAAAATCATGCCTGAAGGTCTTACAGAATCGA
* * * * * ***
12112577 TTGGGATAACATCACATTCGAAAGATAAGGAATCGATCGGGATAACATCGTAAATCAAAATTATG
129 CTGGAATAACATCACAGTCGAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAAATTATG
12112642 CT
194 CT
* *** * * * * * *
12112644 CGAAGGTCTTA-AAAATC-ATGCTCGGAGGTCTTAG-AGAATC-AACTGGGAT-A-ACACCG-TA
1 CGGAGGTCTTACAAAATCGAT--T-GGATAACAT-GCA-AGTCGAA---AGATAAGAAATCGATC
* * * * ** * ** ** * * *
12112702 AGTCAAAAGATAAAGAATCG--ATTGGGATA-ACATCGCG-AATCAAAATTATGCCTGGAGGTCT
58 AG-GATAACACAGCGAATCGAAATT---ATACCCAGAG-GTCTTAAAAATCATGCCTGAAGGTCT
* * * * *
12112763 TACAAAATCGACTAGAATAACATCACAGTCGAAAGATAAGGAATCGATTGGGATAACACTACGAA
118 TACAGAATCGACTGGAATAACATCACAGTCGAAAGATAAAGAATCGATCGGGATAACACCACGAA
* *
12112828 TCGAAATTATGTT
183 TCAAAATTATGCT
* * *
12112841 CGGAGGTCTTA-AATAATTGACTAGGATAACATTGCAAGTCGAAAGATAAGAAATCGATCAGGTT
1 CGGAGGTCTTACAA-AATCGA-TTGGATAACA-TGCAAGTCGAAAGATAAGAAATCGATCAGGAT
* * * * * *
12112905 AACACAACGAGTCAAAATTATGCCCGGAGGTCTTAGAAATCATGCCTGAAGGTCTTACAGAATCG
63 AACACAGCGAATCGAAATTATACCCAGAGGTCTTAAAAATCATGCCTGAAGGTCTTACAGAATCG
* *
12112970 ACTGAAATAACATCACAGTCGAAAGATAAAGAATCGATCGAGATAACACCACGAATCAAAATTAT
128 ACTGGAATAACATCACAGTCGAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAAATTAT
*
12113035 GCC
193 GCT
* * * * * * *
12113038 CGGAGGTCTTACAGAATCGACTGGAATAATATCACAAGTCAAAAGATAA-AGAATCAAT-TGAGA
1 CGGAGGTCTTACAAAATCGATTGG-ATAACAT-GCAAGTCGAAAGATAAGA-AATCGATCAG-GA
* * * * * * * *
12113101 TAACACCA-TGAATCAAAATTATGCTCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTA
62 TAACA-CAGCGAATCGAAATTATACCCAGAGGTCTTAAAAATCATGCCTGAAGGTCTTA
12113159 TATCACCACA
Statistics
Matches: 565, Mismatches: 111, Indels: 72
0.76 0.15 0.10
Matches are distributed among these distances:
194 2 0.00
195 12 0.02
196 72 0.13
197 435 0.77
198 36 0.06
199 7 0.01
200 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (195 bp):
CGGAGGTCTTACAAAATCGATTGGATAACATGCAAGTCGAAAGATAAGAAATCGATCAGGATAAC
ACAGCGAATCGAAATTATACCCAGAGGTCTTAAAAATCATGCCTGAAGGTCTTACAGAATCGACT
GGAATAACATCACAGTCGAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAAATTATGCT
Found at i:12112564 original size:109 final size:108
Alignment explanation
Indices: 12112437--12112771 Score: 397
Period size: 109 Copynumber: 3.1 Consensus size: 108
12112427 ACCGTGAATC
* * *
12112437 AAAATTATGCCTGGAGGTCTTACATAATCGATTGGATAACACTGCAAGTCGAAAGATAAGAAATC
1 AAAATCATGCCCGGAGGTCTTACAGAATCGATTGGATAACACTGCAAGTCGAAAGATAAGAAATC
* * *
12112502 GATCGGGATAACACCGCGAATCGAAATTATACCCAGAGGTCTTA
66 GATCGGGATAACATCGCGAATCAAAATTATGCCC-GAGGTCTTA
* *
12112546 AAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACA-T-CACATTCGAAAGATAAGGAA
1 AAAATCATGCCCGGAGGTCTTACAGAATCGATT-GGATAACACTGCA-AGTCGAAAGATAAGAAA
** *
12112609 TCGATCGGGATAACATCGTAAATCAAAATTATGCTCGAAGGTCTTA
64 TCGATCGGGATAACATCGCGAATCAAAATTATGCCCG-AGGTCTTA
* * * * * * *
12112655 AAAATCATGCTCGGAGGTCTTAGAGAATCAACTGGGATAACACCGTAAGTCAAAAGATAA-AGAA
1 AAAATCATGCCCGGAGGTCTTACAGAATCGA-TTGGATAACACTGCAAGTCGAAAGATAAGA-AA
* *
12112719 TCGATTGGGATAACATCGCGAATCAAAATTATGCCTGGAGGTCTTA
64 TCGATCGGGATAACATCGCGAATCAAAATTATGCC-CGAGGTCTTA
12112765 CAAAATC
1 -AAAATC
12112772 GACTAGAATA
Statistics
Matches: 192, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
108 3 0.02
109 120 0.62
110 61 0.32
111 8 0.04
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (108 bp):
AAAATCATGCCCGGAGGTCTTACAGAATCGATTGGATAACACTGCAAGTCGAAAGATAAGAAATC
GATCGGGATAACATCGCGAATCAAAATTATGCCCGAGGTCTTA
Found at i:12112664 original size:22 final size:22
Alignment explanation
Indices: 12112633--12112676 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
12112623 ATCGTAAATC
*
12112633 AAAATTATGCTCGAAGGTCTTA
1 AAAATCATGCTCGAAGGTCTTA
*
12112655 AAAATCATGCTCGGAGGTCTTA
1 AAAATCATGCTCGAAGGTCTTA
12112677 GAGAATCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (22 bp):
AAAATCATGCTCGAAGGTCTTA
Found at i:12112815 original size:87 final size:88
Alignment explanation
Indices: 12112701--12112939 Score: 281
Period size: 87 Copynumber: 2.7 Consensus size: 88
12112691 ATAACACCGT
* * *
12112701 AAGTCAAAAGATAAAGAATCGATTGGGATAACATC-GCGAATCAAAATTATGCCTGGAGGTCTTA
1 AAGTCGAAAGATAAGGAATCGATTGGGATAACA-CAACGAATCAAAATTATGCCTGGAGGTCTTA
12112765 CAA-AATCGACTAGAATAACA-T-C
65 -AATAATCGACTAGAATAACATTGC
* * *
12112787 ACAGTCGAAAGATAAGGAATCGATTGGGATAACACTACGAATCGAAATTATG-TTCGGAGGTCTT
1 A-AGTCGAAAGATAAGGAATCGATTGGGATAACACAACGAATCAAAATTATGCCT-GGAGGTCTT
* *
12112851 AAATAATTGACTAGGATAACATTGC
64 AAATAATCGACTAGAATAACATTGC
* ** * * *
12112876 AAGTCGAAAGATAAGAAATCGATCAGGTTAACACAACGAGTCAAAATTATGCCCGGAGGTCTTA
1 AAGTCGAAAGATAAGGAATCGATTGGGATAACACAACGAATCAAAATTATGCCTGGAGGTCTTA
12112940 GAAATCATGC
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
86 5 0.04
87 69 0.53
88 54 0.42
89 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (88 bp):
AAGTCGAAAGATAAGGAATCGATTGGGATAACACAACGAATCAAAATTATGCCTGGAGGTCTTAA
ATAATCGACTAGAATAACATTGC
Found at i:12112949 original size:22 final size:22
Alignment explanation
Indices: 12112919--12112961 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
12112909 CAACGAGTCA
* *
12112919 AAATTATGCCCGGAGGTCTTAG
1 AAATCATGCCCGAAGGTCTTAG
*
12112941 AAATCATGCCTGAAGGTCTTA
1 AAATCATGCCCGAAGGTCTTA
12112962 CAGAATCGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (22 bp):
AAATCATGCCCGAAGGTCTTAG
Found at i:12113119 original size:88 final size:87
Alignment explanation
Indices: 12112954--12113136 Score: 294
Period size: 88 Copynumber: 2.1 Consensus size: 87
12112944 TCATGCCTGA
* *
12112954 AGGTCTTACAGAATCGACTGAAATAACATCACAGTCGAAAGATAAAGAATCGATCGAGATAACAC
1 AGGTCTTACAGAATCGACTGAAATAACATCACAGTCAAAAGATAAAGAATCAATCGAGATAACAC
12113019 CACGAATCAAAATTATGCCCGG
66 CACGAATCAAAATTATGCCCGG
* * *
12113041 AGGTCTTACAGAATCGACTGGAATAATATCACAAGTCAAAAGATAAAGAATCAATTGAGATAACA
1 AGGTCTTACAGAATCGACTGAAATAACATCAC-AGTCAAAAGATAAAGAATCAATCGAGATAACA
* *
12113106 CCATGAATCAAAATTATGCTCGG
65 CCACGAATCAAAATTATGCCCGG
12113129 AGGTCTTA
1 AGGTCTTA
12113137 GAAATCATGC
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 30 0.34
88 58 0.66
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (87 bp):
AGGTCTTACAGAATCGACTGAAATAACATCACAGTCAAAAGATAAAGAATCAATCGAGATAACAC
CACGAATCAAAATTATGCCCGG
Found at i:12113141 original size:22 final size:22
Alignment explanation
Indices: 12113116--12113158 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
12113106 CCATGAATCA
* *
12113116 AAATTATGCTCGGAGGTCTTAG
1 AAATCATGCCCGGAGGTCTTAG
12113138 AAATCATGCCCGGAGGTCTTA
1 AAATCATGCCCGGAGGTCTTA
12113159 TATCACCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (22 bp):
AAATCATGCCCGGAGGTCTTAG
Found at i:12113198 original size:95 final size:95
Alignment explanation
Indices: 12113070--12113253 Score: 255
Period size: 95 Copynumber: 1.9 Consensus size: 95
12113060 GGAATAATAT
* * * * * *
12113070 CACAAGTCAAAAGATAAAGAATCAATTGAGATAACACCATGAATCAAAATTAT-GCTCGGAGGTC
1 CACAAGTCAAAAAATAAAGAATCAATAGAGATAACACCACGAATCAAAATTATATC-CGAAGATC
12113134 TTAGAAATCATGCCCGGAGGTCTTATATCAC
65 TTAGAAATCATGCCCGGAGGTCTTATATCAC
* *
12113165 CACAAGTCAAAAAATAAAGAATCGATCAG-GATAACATCACGAATCAAAATTATATCCGAAGATC
1 CACAAGTCAAAAAATAAAGAATCAAT-AGAGATAACACCACGAATCAAAATTATATCCGAAGATC
*
12113229 TTAGAAATCATGTCCGGAGGTCTTA
65 TTAGAAATCATGCCCGGAGGTCTTA
12113254 AAAATCATAC
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
95 76 0.97
96 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (95 bp):
CACAAGTCAAAAAATAAAGAATCAATAGAGATAACACCACGAATCAAAATTATATCCGAAGATCT
TAGAAATCATGCCCGGAGGTCTTATATCAC
Found at i:12113244 original size:22 final size:22
Alignment explanation
Indices: 12113210--12113261 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
12113200 ATCACGAATC
* *
12113210 AAAATTATATCCGAAGATCTTA
1 AAAATCATGTCCGAAGATCTTA
* * *
12113232 GAAATCATGTCCGGAGGTCTTA
1 AAAATCATGTCCGAAGATCTTA
12113254 AAAATCAT
1 AAAATCAT
12113262 ACCCGGAGGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.29
Consensus pattern (22 bp):
AAAATCATGTCCGAAGATCTTA
Found at i:12113267 original size:22 final size:22
Alignment explanation
Indices: 12113227--12113281 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
12113217 TATCCGAAGA
* **
12113227 TCTTAGAAATCATGTCCGGAGG
1 TCTTAAAAATCATACCCGGAGG
12113249 TCTTAAAAATCATACCCGGAGG
1 TCTTAAAAATCATACCCGGAGG
12113271 TCTTACAAAAT
1 TCTTA-AAAAT
12113282 TAACTGGGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 24 0.83
23 5 0.17
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (22 bp):
TCTTAAAAATCATACCCGGAGG
Found at i:12113598 original size:22 final size:22
Alignment explanation
Indices: 12113564--12113606 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
12113554 TCGCGAATCA
*
12113564 AAATTATGCTCGGAGGTCTTAG
1 AAATCATGCTCGGAGGTCTTAG
*
12113586 AAATCATGTTCGGAGGTCTTA
1 AAATCATGCTCGGAGGTCTTA
12113607 CAGAATCGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.33
Consensus pattern (22 bp):
AAATCATGCTCGGAGGTCTTAG
Found at i:12113653 original size:220 final size:221
Alignment explanation
Indices: 12113255--12113653 Score: 471
Period size: 220 Copynumber: 1.8 Consensus size: 221
12113245 GAGGTCTTAA
* * * *
12113255 AAATCATACCCGGAGGTCTTACAAAATTAACTGGGATAACACCATAAGTCGAAAGATAAAAAAAT
1 AAATCATACCCGAAAGTCTTACAAAATTAACTAGGATAACACCACAAGTCGAAAGATAAAAAAAT
* * * *
12113320 TGATCGGGATAACACTGTGAATCAAATTTATGCCCGAAGGTATTAAAAATCATGCCCGGAGGTCT
66 CGATCGAGATAACACTGCGAATCAAAATTATGCCCGAAGGTATTAAAAATCATGCCCGGAGGTCT
* * * ** **
12113385 TATAGAATTGATCGAAATAACACCACAAGTCAAAATTTAAGGAATCGATTGGGTTAACACCACGA
131 TACAGAATCGATAGAAATAACACCACAAGTCAAAAAATAAAAAATCGATTGGGTTAACACCACGA
12113450 ATCAAAATTATACCCGGAGCTATTAG
196 ATCAAAATTATACCCGGAGCTATTAG
* * * * * * *
12113476 AAATCATATCCGAAAGTCTTACAGAATTGACTAGGATAATATCACGAGTTGAAAGAT-AAAAAAT
1 AAATCATACCCGAAAGTCTTACAAAATTAACTAGGATAACACCACAAGTCGAAAGATAAAAAAAT
* * * * **
12113540 CGATCGAGATAACA-TCGCGAATCAAAATTATGCTCGGAGGTCTTAGAAATCATGTTCGGAGGTC
66 CGATCGAGATAACACT-GCGAATCAAAATTATGCCCGAAGGTATTAAAAATCATGCCCGGAGGTC
* * **
12113604 TTACAGAATCGACTAG-GATAACATCGTAAGTCAAAAAATAAAAAATCGAT
130 TTACAGAATCGA-TAGAAATAACACCACAAGTCAAAAAATAAAAAATCGAT
12113654 CTAGATAATA
Statistics
Matches: 144, Mismatches: 32, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
219 1 0.01
220 95 0.66
221 48 0.33
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (221 bp):
AAATCATACCCGAAAGTCTTACAAAATTAACTAGGATAACACCACAAGTCGAAAGATAAAAAAAT
CGATCGAGATAACACTGCGAATCAAAATTATGCCCGAAGGTATTAAAAATCATGCCCGGAGGTCT
TACAGAATCGATAGAAATAACACCACAAGTCAAAAAATAAAAAATCGATTGGGTTAACACCACGA
ATCAAAATTATACCCGGAGCTATTAG
Found at i:12113681 original size:110 final size:109
Alignment explanation
Indices: 12113233--12113694 Score: 334
Period size: 110 Copynumber: 4.2 Consensus size: 109
12113223 AAGATCTTAG
* * * * * * ** * *
12113233 AAATCATGTCCGGAGGTCTTAAAAATCATACCCGGAGGTCTTACAAAATTAACTGGGATAACACC
1 AAATTATG-CCGGAGGTCTTAGAAATCATATCCGAAAGTCTTACAGAATCGACTAGGATAACATC
* * * * * *
12113298 ATAAGTCGAAAGATAAAAAAATTGATCGGGATAACA-CTGTGAATCA
65 ACAAGTCAAAAAAT-AAAAAATCGATCGAGATAACATC-GCGAATCA
* * * * ** * * * * * * *
12113344 AATTTATGCCCGAAGGTATTAAAAATCATGCCCGGAGGTCTTATAGAATTGA-TCGAAATAACAC
1 AAATTATG-CCGGAGGTCTTAGAAATCATATCCGAAAGTCTTACAGAATCGACTAG-GATAACAT
** ** * * * * *
12113408 CACAAGTCAAAATTTAAGGAATCGATTGGGTTAACACCACGAATCA
64 CACAAGTCAAAAAATAAAAAATCGATCGAGATAACATCGCGAATCA
* * * * *
12113454 AAATTATACCCGGAGCTATTAGAAATCATATCCGAAAGTCTTACAGAATTGACTAGGATAATATC
1 AAATTAT-GCCGGAGGTCTTAGAAATCATATCCGAAAGTCTTACAGAATCGACTAGGATAACATC
* ** *
12113519 ACGAGTTGAAAGATAAAAAATCGATCGAGATAACATCGCGAATCA
65 ACAAGTCAAAAAATAAAAAATCGATCGAGATAACATCGCGAATCA
* * * *
12113564 AAATTATGCTCGGAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCGACTAGGATAACATC
1 AAATTATGC-CGGAGGTCTTAGAAATCATATCCGAAAGTCTTACAGAATCGACTAGGATAACATC
** * * *
12113629 GTAAGTCAAAAAATAAAAAATCGATCTAGATAATATCGTGAATCA
65 ACAAGTCAAAAAATAAAAAATCGATCGAGATAACATCGCGAATCA
12113674 AAATTATGCCTGGAGGTCTTA
1 AAATTATGCC-GGAGGTCTTA
12113695 CAGAATCGAC
Statistics
Matches: 279, Mismatches: 66, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
109 2 0.01
110 213 0.76
111 64 0.23
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (109 bp):
AAATTATGCCGGAGGTCTTAGAAATCATATCCGAAAGTCTTACAGAATCGACTAGGATAACATCA
CAAGTCAAAAAATAAAAAATCGATCGAGATAACATCGCGAATCA
Found at i:12113711 original size:88 final size:87
Alignment explanation
Indices: 12113597--12113782 Score: 277
Period size: 88 Copynumber: 2.1 Consensus size: 87
12113587 AATCATGTTC
12113597 GGAGGTCTTACAGAATCGACTAGGATAACATCGTAAGTCAA-AAAATAAAAAATCGATCTAGATA
1 GGAGGTCTTACAGAATCGACTAGGATAACATCGTAAGT-AAGAAAATAAAAAATCGATCTAGATA
*
12113661 ATATCGT-GAATCAAAATTATGCCT
65 ACA-C-TAGAATCAAAATTATGCCT
* * * *
12113685 GGAGGTCTTACAGAATCGACTGGGATAACATTGTAAGTAAGAAAATAAGAAATCGATCTGGATAA
1 GGAGGTCTTACAGAATCGACTAGGATAACATCGTAAGTAAGAAAATAAAAAATCGATCTAGATAA
12113750 CACTACGAATCAAAATTATGCCT
66 CACTA-GAATCAAAATTATGCCT
12113773 GGAGGTCTTA
1 GGAGGTCTTA
12113783 AAAATCATAC
Statistics
Matches: 90, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
86 1 0.01
87 3 0.03
88 86 0.96
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.25
Consensus pattern (87 bp):
GGAGGTCTTACAGAATCGACTAGGATAACATCGTAAGTAAGAAAATAAAAAATCGATCTAGATAA
CACTAGAATCAAAATTATGCCT
Found at i:12113882 original size:197 final size:199
Alignment explanation
Indices: 12113526--12113891 Score: 528
Period size: 197 Copynumber: 1.8 Consensus size: 199
12113516 ATCACGAGTT
* *
12113526 GAAAGATAAAAAATCGATCGAGATAACATCGCGAATCAAAATTATGCTCGGAGGTCTTAGAAATC
1 GAAAGATAAAAAATCGATCGAGATAACATCACGAATCAAAATTATGCTCGGAGGTCTTAAAAATC
** *
12113591 ATGTTCGGAGGTCTTACAGAATCGACTAGGATAACATCGTAAGTCAAAAAATAAAAAATCGATCT
66 ATGACCGGAGGTCTTACAAAATCGACTAGGATAACATCGTAAGTCAAAAAATAAAAAATCGATCT
* ** *
12113656 AGATAATATCGTGAATCAAAATTATGCCTGGAGGTCTTACAGAATCGACTGGGATAACATTGTAA
131 AGATAACATCGCAAATCAAAATTATGCCTGAAGGTCTTACAGAATCGACTGGGATAACATTGTAA
12113721 GTAA
196 GTAA
*
12113725 GAAA-ATAAGAAATCGATCTG-GATAACA-CTACGAATCAAAATTATGC-CTGGAGGTCTTAAAA
1 GAAAGATAAAAAATCGATC-GAGATAACATC-ACGAATCAAAATTATGCTC-GGAGGTCTTAAAA
* * *
12113786 ATCAT-ACCGGAGGTCTTACAAAATCGA-TTGAGATAACATCGTAAGTCAAAAAATAAGAAATTG
63 ATCATGACCGGAGGTCTTACAAAATCGACTAG-GATAACATCGTAAGTCAAAAAATAAAAAATCG
*
12113849 ATCTAGATAACATCGCAAATCGAAATTATGCCTGAAGGTCTTA
127 ATCTAGATAACATCGCAAATCAAAATTATGCCTGAAGGTCTTA
12113892 GAAATCATGC
Statistics
Matches: 149, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
196 2 0.01
197 89 0.60
198 53 0.36
199 5 0.03
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.25
Consensus pattern (199 bp):
GAAAGATAAAAAATCGATCGAGATAACATCACGAATCAAAATTATGCTCGGAGGTCTTAAAAATC
ATGACCGGAGGTCTTACAAAATCGACTAGGATAACATCGTAAGTCAAAAAATAAAAAATCGATCT
AGATAACATCGCAAATCAAAATTATGCCTGAAGGTCTTACAGAATCGACTGGGATAACATTGTAA
GTAA
Found at i:12113901 original size:22 final size:22
Alignment explanation
Indices: 12113870--12113913 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
12113860 ATCGCAAATC
* * *
12113870 GAAATTATGCCTGAAGGTCTTA
1 GAAATCATGCCCGAAAGTCTTA
12113892 GAAATCATGCCCGAAAGTCTTA
1 GAAATCATGCCCGAAAGTCTTA
12113914 CAGAATTGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (22 bp):
GAAATCATGCCCGAAAGTCTTA
Found at i:12113968 original size:110 final size:110
Alignment explanation
Indices: 12113674--12114345 Score: 613
Period size: 110 Copynumber: 6.1 Consensus size: 110
12113664 TCGTGAATCA
* * * *
12113674 AAATTATGCCTGGAGGTCTTACAGAATCGACTGGGATAACATTGTAAGTAAGAAA-ATAAGAAAT
1 AAATCATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGTAAGT-CGAAAGATAAGAAAT
* * *
12113738 CGATCTGGATAACA-CTACGAATCAAAATTATGCCTGGAGGTCTTAA
65 CGATCGGGATAACATC-GCGAATCAAAATTATGCCTGGAGGTCTTAG
* * * * * * *
12113784 AAATCAT-ACCGGAGGTCTTACAAAATCGATTGAGATAACATCGTAAGTCAAAAAATAAGAAATT
1 AAATCATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGTAAGTCGAAAGATAAGAAATC
** * * *
12113848 GATCTAGATAACATCGCAAATCGAAATTATGCCTGAAGGTCTTAG
66 GATCGGGATAACATCGCGAATCAAAATTATGCCTGGAGGTCTTAG
* * * * * * *
12113893 AAATCATGCCCGAAAGTCTTACAGAATTGACTAGGATAACACCATAAGTTGAAAGATAAGAAATC
1 AAATCATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGTAAGTCGAAAGATAAGAAATC
* * * *
12113958 GATCGGGATAAGACCACGAATCAAAATTATGTCTGGAGGTCTTAG
66 GATCGGGATAACATCGCGAATCAAAATTATGCCTGGAGGTCTTAG
* * * * *
12114003 AAATAATCCCCGGAGGTCTTGCAGAATCGACTGGGATAACATCGCAAGTCGAAAGATAAGGAATC
1 AAATCATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGTAAGTCGAAAGATAAGAAATC
* * * * *
12114068 AATCGGGATAACACCGTGAATCAAAATTATACCAGGAGGTCTTAG
66 GATCGGGATAACATCGCGAATCAAAATTATGCCTGGAGGTCTTAG
** * * * * *
12114113 AAATCATGTTCGAAGGTTTTACAAAATCGATTGGGATAACAT--TACAGTTGAAAGATAA-AGAA
1 AAATCATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGTA-AGTCGAAAGATAAGA-AA
* ** ** * * * *
12114175 TCGATCGGGATAGCATCGTAAATTGAAATTATACCCGAAGATCTTAG
64 TCGATCGGGATAACATCGCGAATCAAAATTATGCCTGGAGGTCTTAG
* * ** * *** * * *
12114222 AAATCATGCTCGGAGGTCTTACAGAATTGACTAAGATAATATAACAGGACAAAAGATAA-AGAAT
1 AAATCATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGTAAGTCGAAAGATAAGA-AAT
* *
12114286 CGATCGGGATAACATCACGAATCGAAATTATGCAC-GGAGGTCTTAG
65 CGATCGGGATAACATCGCGAATCAAAATTATGC-CTGGAGGTCTTAG
12114332 AAATCATGCCCGGA
1 AAATCATGCCCGGA
12114346 AGTTTTAGAA
Statistics
Matches: 452, Mismatches: 102, Indels: 16
0.79 0.18 0.03
Matches are distributed among these distances:
108 4 0.01
109 173 0.38
110 273 0.60
111 2 0.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.24
Consensus pattern (110 bp):
AAATCATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGTAAGTCGAAAGATAAGAAATC
GATCGGGATAACATCGCGAATCAAAATTATGCCTGGAGGTCTTAG
Found at i:12113979 original size:219 final size:216
Alignment explanation
Indices: 12113689--12114348 Score: 666
Period size: 219 Copynumber: 3.0 Consensus size: 216
12113679 ATGCCTGGAG
* * * *
12113689 GTCTTACAGAATCGACTGGGATAACATTGTAAGTAAGAAA-ATAAGAAATCGATCTGGATAACAC
1 GTCTTACAGAATCGACTGGGATAACA--ATAAGT-TGAAAGATAAGAAATCGATCGGGATAAGAC
* * * *
12113753 TACGAATCAAAATTATGCCTGGAGGTCTTAAAAATCATACCGGAGGTCTTACAAAATCGATTGAG
63 CACGAATCAAAATTATGCCTGGAGGTCTTAGAAATCATACCGGAGGTCTTACAGAATCGACTGAG
* * * ** *
12113818 ATAACATCGTAAGTCAAAAAATAAGAAATTGATCTAGATAACATCGCAAATCGAAATTATGCCTG
128 ATAACATCGCAAGTCAAAAGATAAGAAATCGATCGGGATAACATCGCGAATCGAAATTATGCC-G
*
12113883 AAGGTCTTAGAAATCATGCCCGAAA
192 GAGGTCTTAGAAATCATGCCCGAAA
* *
12113908 GTCTTACAGAATTGACTAGGATAACACCATAAGTTGAAAGATAAGAAATCGATCGGGATAAGACC
1 GTCTTACAGAATCGACTGGGATAACA--ATAAGTTGAAAGATAAGAAATCGATCGGGATAAGACC
* * * * *
12113973 ACGAATCAAAATTATGTCTGGAGGTCTTAGAAATAATCCCCGGAGGTCTTGCAGAATCGACTGGG
64 ACGAATCAAAATTATGCCTGGAGGTCTTAGAAATCAT-ACCGGAGGTCTTACAGAATCGACTGAG
* * * * * * *
12114038 ATAACATCGCAAGTCGAAAGATAAGGAATCAATCGGGATAACACCGTGAATCAAAATTATACCAG
128 ATAACATCGCAAGTCAAAAGATAAGAAATCGATCGGGATAACATCGCGAATCGAAATTATGCC-G
** *
12114103 GAGGTCTTAGAAATCATGTTCGAAG
192 GAGGTCTTAGAAATCATGCCCGAAA
* * * *
12114128 GTTTTACAAAATCGATTGGGATAACATTACAGTTGAAAGATAA-AGAATCGATCGGGAT-AG--C
1 GTCTTACAGAATCGACTGGGATAACAATA-AGTTGAAAGATAAGA-AATCGATCGGGATAAGACC
** * * * * * *
12114189 ATCGTAAATTGAAATTATACCCGAAGATCTTAGAAATCATGCTCGGAGGTCTTACAGAATTGACT
64 A-CG--AATCAAAATTATGCCTGGAGGTCTTAGAAATCATAC-CGGAGGTCTTACAGAATCGACT
* * ** * * *
12114254 AAGATAATATAACAGGACAAAAGATAA-AGAATCGATCGGGATAACATCACGAATCGAAATTATG
125 GAGATAACATCGCAAGTCAAAAGATAAGA-AATCGATCGGGATAACATCGCGAATCGAAATTATG
*
12114318 CACGGAGGTCTTAGAAATCATGCCCGGAA
189 C-CGGAGGTCTTAGAAATCATGCCCGAAA
12114347 GT
1 GT
12114349 TTTAGAAATC
Statistics
Matches: 360, Mismatches: 71, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
216 2 0.01
217 2 0.01
218 10 0.03
219 230 0.64
220 116 0.32
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (216 bp):
GTCTTACAGAATCGACTGGGATAACAATAAGTTGAAAGATAAGAAATCGATCGGGATAAGACCAC
GAATCAAAATTATGCCTGGAGGTCTTAGAAATCATACCGGAGGTCTTACAGAATCGACTGAGATA
ACATCGCAAGTCAAAAGATAAGAAATCGATCGGGATAACATCGCGAATCGAAATTATGCCGGAGG
TCTTAGAAATCATGCCCGAAA
Found at i:12114289 original size:329 final size:328
Alignment explanation
Indices: 12113685--12114937 Score: 801
Period size: 329 Copynumber: 3.7 Consensus size: 328
12113675 AATTATGCCT
* * * *
12113685 GGAGGTCTTACAGAATCGACTGGGATAACATTGTAAGTAAGAAAATAAGAAATCGATCTGGATAA
1 GGAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTAAGAAAATAAGAAATCAATCGGGATAA
* * * *
12113750 CACTACGAATCAAAATTATGCCTGGAGGTCTTAAAAATCATACCGGAGGTCTTACAAAATCGATT
66 CACCACGAATCAAAATTATACCAGGAGGTCTTAAAAATCATACCGAAGGTCTTACAAAATCGATT
* * *
12113815 GAGATAACATCGTAAGTCAAAAAATAAGAAATTGATCTAGATAACATCGCAAATCGAAATTATGC
131 GAGATAACATC-TAAGTCAAAAAATAAGAAATCGATCGAGATAACATCGCAAATCGAAATTATAC
* * * * * ***
12113880 CTGAAGGTCTTAGAAATCATGCCCGAAAGTCTTACAGAATTGACTAGGATAACACCATAAGTTGA
195 CCGAAGATCTTAGAAATCATGCCCGAAAGTCTTACAGAATTGACTAAGATAACACAACAAGACAA
* *
12113945 AAGATAAGAAATCGATCGGGATAAGACCACGAATCAAAATTATGTC-TGGAGGTCTTAGAAATAA
260 AAGATAAGAAATCGATCGGGATAACACCACGAATCAAAATTATG-CACGGAGGTCTTAGAAATAA
12114009 TCCCC
324 TCCCC
* * *
12114014 GGAGGTCTTGCAGAATCGACTGGGATAACATCGCAAGT-CGAAAGATAAGGAATCAATCGGGATA
1 GGAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTAAGAAA-ATAAGAAATCAATCGGGATA
** * ** *
12114078 ACACCGTGAATCAAAATTATACCAGGAGGTCTTAGAAATCATGTTCGAAGGTTTTACAAAATCGA
65 ACACCACGAATCAAAATTATACCAGGAGGTCTTAAAAATCAT-ACCGAAGGTCTTACAAAATCGA
* ** * * * * *
12114143 TTGGGATAACAT-TACAGTTGAAAGATAA-AGAATCGATCGGGATAGCATCGTAAATTGAAATTA
129 TTGAGATAACATCTA-AGTCAAAAAATAAGA-AATCGATCGAGATAACATCGCAAATCGAAATTA
* * * * * *
12114206 TACCCGAAGATCTTAGAAATCATGCTCGGAGGTCTTACAGAATTGACTAAGATAATATAACAGGA
192 TACCCGAAGATCTTAGAAATCATGCCCGAAAGTCTTACAGAATTGACTAAGATAACACAACAAGA
* *
12114271 CAAAAGATAA-AGAATCGATCGGGATAACATCACGAATCGAAATTATGCACGGAGGTCTTAGAAA
257 CAAAAGATAAGA-AATCGATCGGGATAACACCACGAATCAAAATTATGCACGGAGGTCTTAGAAA
* *
12114335 TCATGCCC
321 TAATCCCC
* * * * * * * * *
12114343 GGAAGTTTTAGA-AATCATGCCCGGAGGTCTTATATA-ACCACAAATCAA-AAGATAA-AGAATC
1 GGAGGTCTTACAGAATC--G-ACTG-GG----ATA-ACATCGCAAGT-AAGAAAATAAGA-AATC
* * * * * * *
12114404 GATCTGGATAACGTTGTGAACCAAAATTATGTTCGGAGGTCTTAGAAATCATGCCTGAAGGTCTT
55 AATCGGGATAAC-------ACC------A----C-GA-ATC--A-AAATTATACCAGGAGGTCTT
* * * * * * *
12114469 AAAAATCATGCCCGGAGGTCTTATAGAATCGACTGGGATAACATC-ACAGTCAAAAGATAAGAAA
98 AAAAATCAT-ACCGAAGGTCTTACAAAATCGATTGAGATAACATCTA-AGTCAAAAAATAAGAAA
* * ** * * * ** * *
12114533 TCGAT-TAGGATAACACCGTGAATCGAAATTGTA-CCTAGAGATCTTAAAAATCATGCTTGGAGG
161 TCGATCGA-GATAACATCGCAAATCGAAATTATACCCGA-AGATCTTAGAAATCATGCCCGAAAG
* * * * * **
12114596 TCTTACAGAATCGACTAAGATAACACCACAAGTCGAAAGATAAAAAAATCGATCGAAATAACACC
224 TCTTACAGAATTGACTAAGATAACACAACAAGACAAAAGAT-AAGAAATCGATCGGGATAACACC
* * * * * * *
12114661 GCGAATCGAAATTATGCTCGAAGGTATTAGAAATCATGCCC
288 ACGAATCAAAATTATGCACGGAGGTCTTAGAAATAATCCCC
* * * * * * * *
12114702 GAAAGTCTTACAGAATTGA-TCAGGATAACACCACAAGTCAA-AAAATAAGAAATCGATCGAGAT
1 GGAGGTCTTACAGAATCGACT-GGGATAACATCGCAAGT-AAGAAAATAAGAAATCAATCGGGAT
* * * * * * * ** *
12114765 AACATCGCGAATCAAAATTATGCCCGGAGGTATAAAAAATCATGCCTGGGGGTCTTACAGAATCG
64 AACACCACGAATCAAAATTATACCAGGAGGTCTTAAAAATCATACC-GAAGGTCTTACAAAATCG
* * ** * * * *
12114830 ATTGGGATAACATCGTGAGTTGAAAGATAAAAAATTGATCGAGATAACA-CTGCGAATCGAAATT
128 ATTGAGATAACATC-TAAGTCAAAAAATAAGAAATCGATCGAGATAACATC-GCAAATCGAAATT
* * * *
12114894 ATGCCCGGAAG-TCTTAGAAATCATGTCCGGAGGTCTTACAGAAT
191 ATACCC-GAAGATCTTAGAAATCATGCCCGAAAGTCTTACAGAAT
12114938 CGTGCCCAGA
Statistics
Matches: 727, Mismatches: 140, Indels: 112
0.74 0.14 0.11
Matches are distributed among these distances:
328 13 0.02
329 247 0.34
330 84 0.12
331 70 0.10
332 7 0.01
333 3 0.00
334 2 0.00
335 1 0.00
336 27 0.04
337 3 0.00
343 3 0.00
345 2 0.00
351 1 0.00
352 34 0.05
353 1 0.00
354 2 0.00
355 2 0.00
356 2 0.00
357 4 0.01
358 150 0.21
359 65 0.09
360 4 0.01
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.23
Consensus pattern (328 bp):
GGAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTAAGAAAATAAGAAATCAATCGGGATAA
CACCACGAATCAAAATTATACCAGGAGGTCTTAAAAATCATACCGAAGGTCTTACAAAATCGATT
GAGATAACATCTAAGTCAAAAAATAAGAAATCGATCGAGATAACATCGCAAATCGAAATTATACC
CGAAGATCTTAGAAATCATGCCCGAAAGTCTTACAGAATTGACTAAGATAACACAACAAGACAAA
AGATAAGAAATCGATCGGGATAACACCACGAATCAAAATTATGCACGGAGGTCTTAGAAATAATC
CCC
Found at i:12114340 original size:22 final size:22
Alignment explanation
Indices: 12114309--12114374 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
12114299 ATCACGAATC
* *
12114309 GAAATTATGCACGGAGGTCTTA
1 GAAATCATGCCCGGAGGTCTTA
* *
12114331 GAAATCATGCCCGGAAGTTTTA
1 GAAATCATGCCCGGAGGTCTTA
12114353 GAAATCATGCCCGGAGGTCTTA
1 GAAATCATGCCCGGAGGTCTTA
12114375 TATAACCACA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (22 bp):
GAAATCATGCCCGGAGGTCTTA
Found at i:12114465 original size:22 final size:22
Alignment explanation
Indices: 12114440--12114491 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
12114430 TTATGTTCGG
* *
12114440 AGGTCTTAGAAATCATGCCTGA
1 AGGTCTTAAAAATCATGCCCGA
*
12114462 AGGTCTTAAAAATCATGCCCGG
1 AGGTCTTAAAAATCATGCCCGA
12114484 AGGTCTTA
1 AGGTCTTA
12114492 TAGAATCGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (22 bp):
AGGTCTTAAAAATCATGCCCGA
Found at i:12114477 original size:117 final size:117
Alignment explanation
Indices: 12114271--12114493 Score: 322
Period size: 117 Copynumber: 1.9 Consensus size: 117
12114261 TATAACAGGA
* *
12114271 CAAAAGATAAAGAATCGATCGGGATAACATCACGAATCGAAATTATGCACGGAGGTCTTAGAAAT
1 CAAAAGATAAAGAATCGATCGGGATAACATCACGAACCAAAATTATGCACGGAGGTCTTAGAAAT
* *
12114336 CATGCCCGGAAGTTTTAGAAATCATGCCCGGAGGTCTTATATAACCACAAAT
66 CATGCCCGGAAGTCTTAAAAATCATGCCCGGAGGTCTTATATAACCACAAAT
* * *** **
12114388 CAAAAGATAAAGAATCGATCTGGATAACGTTGTGAACCAAAATTATGTTCGGAGGTCTTAGAAAT
1 CAAAAGATAAAGAATCGATCGGGATAACATCACGAACCAAAATTATGCACGGAGGTCTTAGAAAT
*
12114453 CATG-CCTGAAGGTCTTAAAAATCATGCCCGGAGGTCTTATA
66 CATGCCCGGAA-GTCTTAAAAATCATGCCCGGAGGTCTTATA
12114494 GAATCGACTG
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
116 5 0.05
117 88 0.95
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.24
Consensus pattern (117 bp):
CAAAAGATAAAGAATCGATCGGGATAACATCACGAACCAAAATTATGCACGGAGGTCTTAGAAAT
CATGCCCGGAAGTCTTAAAAATCATGCCCGGAGGTCTTATATAACCACAAAT
Found at i:12114757 original size:221 final size:220
Alignment explanation
Indices: 12114460--12114939 Score: 581
Period size: 220 Copynumber: 2.2 Consensus size: 220
12114450 AATCATGCCT
* * * * *
12114460 GAAGGTCTTAAAAATCATGCCCGGAGGTCTTATAGAATCGACTGGGATAACATCACAGTCAAAAG
1 GAAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGACTAGGATAACACCACAGTCAAAAA
* * * * * *
12114525 ATAAGAAATCGATTAG-GATAACACCGTGAATCGAAATTGTACCTAGAGATCTTAAAAATCATGC
66 ATAAGAAATCGA-TAGAGATAACACCGCGAATCAAAATTATACCCAGAGATATAAAAAATCATGC
*
12114589 TTGGAGGTCTTACAGAATCGACTAAGATAACACCACAAGTCGAAAGATAAAAAAATCGATCGAAA
130 CTGGAGGTCTTACAGAATCGACTAAGATAACACCACAAGTCGAAAGAT-AAAAAATCGATCGAAA
*
12114654 TAACACCGCGAATCGAAATTATGCTC-
194 TAACACCGCGAATCGAAATTATGCCCG
* * * *
12114680 GAAGGTATTAGAAATCATGCCCGAAAGTCTTACAGAATTGA-TCAGGATAACACCACAAGTCAAA
1 GAAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGACT-AGGATAACACCAC-AGTCAAA
* * * * *
12114744 AAATAAGAAATCGATCGAGATAACATCGCGAATCAAAATTATGCCCGGAGGTATAAAAAATCATG
64 AAATAAGAAATCGATAGAGATAACACCGCGAATCAAAATTATACCCAGAGATATAAAAAATCATG
* * ** * *** * * *
12114809 CCTGGGGGTCTTACAGAATCGATTGGGATAACATCGTGAGTTGAAAGATAAAAAATTGATCGAGA
129 CCTGGAGGTCTTACAGAATCGACTAAGATAACACCACAAGTCGAAAGATAAAAAATCGATCGAAA
*
12114874 TAACACTGCGAATCGAAATTATGCCCG
194 TAACACCGCGAATCGAAATTATGCCCG
*
12114901 GAA-GTCTTAGAAATCATGTCCGGAGGTCTTACAGAATCG
1 GAAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCG
12114940 TGCCCAGAGG
Statistics
Matches: 217, Mismatches: 39, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
219 1 0.00
220 117 0.54
221 99 0.46
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (220 bp):
GAAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGACTAGGATAACACCACAGTCAAAAA
ATAAGAAATCGATAGAGATAACACCGCGAATCAAAATTATACCCAGAGATATAAAAAATCATGCC
TGGAGGTCTTACAGAATCGACTAAGATAACACCACAAGTCGAAAGATAAAAAATCGATCGAAATA
ACACCGCGAATCGAAATTATGCCCG
Found at i:12114796 original size:110 final size:110
Alignment explanation
Indices: 12114448--12114939 Score: 513
Period size: 110 Copynumber: 4.5 Consensus size: 110
12114438 GGAGGTCTTA
* * * * * *
12114448 GAAATCATGCCTGAAGGTCTTAAAAATCATGCCCGGAGGTCTTATAGAATCGACTGGGATAACAT
1 GAAATTATGCCCGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCGACTAGGATAACAC
* * *
12114513 CAC-AGTCAAAAGATAAGAAATCGAT-TAGGATAACACCGTGAATC
66 CACAAGTCAAAAGATAAAAAATCGATCGA-GATAACACCGCGAATC
* * ** * ** *
12114557 GAAATTGTACCTAGAGATCTTAAAAATCATGCTTGGAGGTCTTACAGAATCGACTAAGATAACAC
1 GAAATTATGCCCGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCGACTAGGATAACAC
* *
12114622 CACAAGTCGAAAGATAAAAAAATCGATCGAAATAACACCGCGAATC
66 CACAAGTCAAAAGAT-AAAAAATCGATCGAGATAACACCGCGAATC
* * * * * * *
12114668 GAAATTATGCTCGAAGGTATTAGAAATCATGCCCGAAAGTCTTACAGAATTGA-TCAGGATAACA
1 GAAATTATGCCCGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCGACT-AGGATAACA
* * *
12114732 CCACAAGTCAAAAAATAAGAAATCGATCGAGATAACATCGCGAATC
65 CCACAAGTCAAAAGATAAAAAATCGATCGAGATAACACCGCGAATC
* * * * * * * *
12114778 AAAATTATGCCCGGAGGTATAAAAAATCATGCCTGGGGGTCTTACAGAATCGATTGGGATAACAT
1 GAAATTATGCCCGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCGACTAGGATAACAC
*** ** * *
12114843 CGTGAGTTGAAAGATAAAAAATTGATCGAGATAACACTGCGAATC
66 CACAAGTCAAAAGATAAAAAATCGATCGAGATAACACCGCGAATC
* * *
12114888 GAAATTATGCCCGGAAGTCTTAGAAATCATGTCCGGAGGTCTTACAGAATCG
1 GAAATTATGCCCGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCG
12114940 TGCCCAGAGG
Statistics
Matches: 311, Mismatches: 67, Indels: 9
0.80 0.17 0.02
Matches are distributed among these distances:
109 56 0.18
110 168 0.54
111 86 0.28
112 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.22
Consensus pattern (110 bp):
GAAATTATGCCCGGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCGACTAGGATAACAC
CACAAGTCAAAAGATAAAAAATCGATCGAGATAACACCGCGAATC
Found at i:12114923 original size:22 final size:22
Alignment explanation
Indices: 12114888--12114957 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
12114878 ACTGCGAATC
*
12114888 GAAATTATGCCCGGAAGTCTTA
1 GAAATCATGCCCGGAAGTCTTA
* *
12114910 GAAATCATGTCCGGAGGTCTTA
1 GAAATCATGCCCGGAAGTCTTA
* * * *
12114932 CAGAATCGTGCCCAGAGGTCTT-
1 GA-AATCATGCCCGGAAGTCTTA
12114954 GAAA
1 GAAA
12114958 GTTGTGGTCG
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
21 2 0.05
22 21 0.54
23 16 0.41
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (22 bp):
GAAATCATGCCCGGAAGTCTTA
Found at i:12115169 original size:22 final size:22
Alignment explanation
Indices: 12115087--12115170 Score: 91
Period size: 22 Copynumber: 3.8 Consensus size: 22
12115077 ATCTTAAAAG
*
12115087 TTATGCCCGAAGG-CTTTAGAGA
1 TTATGCCCAAAGGTC-TTAGAGA
* *
12115109 TTATGCCCGAAGGTCTT-GAAA
1 TTATGCCCAAAGGTCTTAGAGA
* *
12115130 GTTATGCCCAGAGTTCTTAGAGA
1 -TTATGCCCAAAGGTCTTAGAGA
12115153 TTATGCCCAAAGGTCTTA
1 TTATGCCCAAAGGTCTTA
12115171 CAAATATCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
21 3 0.06
22 45 0.87
23 4 0.08
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (22 bp):
TTATGCCCAAAGGTCTTAGAGA
Found at i:12116650 original size:12 final size:12
Alignment explanation
Indices: 12116619--12116651 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
12116609 AAGGTACATA
12116619 TTTTTTTTT-CT
1 TTTTTTTTTACT
*
12116630 TTTTCTTTTACT
1 TTTTTTTTTACT
12116642 TTTTTTTTTA
1 TTTTTTTTTA
12116652 ACTGAAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTACT
Found at i:12117682 original size:11 final size:11
Alignment explanation
Indices: 12117666--12117691 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
12117656 AAAATAAAAC
12117666 TTTTTCTTTTT
1 TTTTTCTTTTT
12117677 TTTTTCTTTTT
1 TTTTTCTTTTT
12117688 TTTT
1 TTTT
12117692 ATTTTCCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:12117696 original size:18 final size:18
Alignment explanation
Indices: 12117665--12117716 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
12117655 CAAAATAAAA
*
12117665 CTTTTTCTTT-TTTTTTT
1 CTTTTTTTTTATTTTTTT
*
12117682 CTTTTTTTTTATTTTCCTT
1 CTTTTTTTTTATTTT-TTT
*
12117701 -GTTTTTTTTATTTTTT
1 CTTTTTTTTTATTTTTT
12117717 GAAATTTTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 10 0.34
18 17 0.59
19 2 0.07
ACGTcount: A:0.04, C:0.10, G:0.02, T:0.85
Consensus pattern (18 bp):
CTTTTTTTTTATTTTTTT
Found at i:12117705 original size:27 final size:26
Alignment explanation
Indices: 12117666--12117716 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
12117656 AAAATAAAAC
* * *
12117666 TTTTTCTTTTTTTTTTCTTTTTTTTTA
1 TTTTCCTTGTTTTTTT-TATTTTTTTA
12117693 TTTTCCTTGTTTTTTTTATTTTTT
1 TTTTCCTTGTTTTTTTTATTTTTT
12117717 GAAATTTTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.04, C:0.08, G:0.02, T:0.86
Consensus pattern (26 bp):
TTTTCCTTGTTTTTTTTATTTTTTTA
Found at i:12123498 original size:34 final size:34
Alignment explanation
Indices: 12123425--12123513 Score: 91
Period size: 34 Copynumber: 2.7 Consensus size: 34
12123415 TTTTTTTGTA
12123425 ATATATATTTTTGTAA-T--TTAA-TTTTAATTG
1 ATATATATTTTTGTAATTAATTAATTTTTAATTG
* *
12123455 ATA-ATTATTTTTGTAATTAATTAATTTTTATTTT
1 ATATA-TATTTTTGTAATTAATTAATTTTTAATTG
*
12123489 ATATATATTTTT-AAATTTAATTAAT
1 ATATATATTTTTGTAA-TTAATTAAT
12123514 CTAAAATGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
29 1 0.02
30 14 0.29
31 1 0.02
33 6 0.12
34 26 0.53
35 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (34 bp):
ATATATATTTTTGTAATTAATTAATTTTTAATTG
Found at i:12125557 original size:33 final size:35
Alignment explanation
Indices: 12125474--12125562 Score: 114
Period size: 33 Copynumber: 2.6 Consensus size: 35
12125464 GTAAGATATT
*
12125474 TATTATTTGCATGAATTTTTTAGGTATAATTTATTA
1 TATTATTTGCATG-ATTTTTTAGGTATAATTTATGA
12125510 TA-TATTTGCATGATTTGTTT-GGTATAA-TTATGA
1 TATTATTTGCATGATTT-TTTAGGTATAATTTATGA
*
12125543 TATTA-TTGCATGATTCTTTA
1 TATTATTTGCATGATTTTTTA
12125563 TGATATTTTG
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
32 3 0.06
33 17 0.35
34 13 0.27
35 13 0.27
36 2 0.04
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.54
Consensus pattern (35 bp):
TATTATTTGCATGATTTTTTAGGTATAATTTATGA
Found at i:12127765 original size:20 final size:19
Alignment explanation
Indices: 12127733--12127775 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
12127723 TTGAAAACCC
*
12127733 AAAAAAACAATTTAAGTTT
1 AAAAAAACAATTTAAGTTG
* *
12127752 AAAAAAAGATATTTGAGTTG
1 AAAAAAACA-ATTTAAGTTG
12127772 AAAA
1 AAAA
12127776 CTTGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.58, C:0.02, G:0.12, T:0.28
Consensus pattern (19 bp):
AAAAAAACAATTTAAGTTG
Found at i:12127961 original size:57 final size:57
Alignment explanation
Indices: 12127890--12128003 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
12127880 TTGAAAAAGA
12127890 ATTCAAAATCAATTTGTTTAGAATTATCTAAATATTCATTATTTTAGATGTTTAGCC
1 ATTCAAAATCAATTTGTTTAGAATTATCTAAATATTCATTATTTTAGATGTTTAGCC
*
12127947 ATTCAAAA-CTAATTTGTTTAGAATTATCTGAATATTCATTATTTTAGATGTTTAGCC
1 ATTCAAAATC-AATTTGTTTAGAATTATCTAAATATTCATTATTTTAGATGTTTAGCC
12128004 CTTTGACAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
56 1 0.02
57 54 0.98
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.46
Consensus pattern (57 bp):
ATTCAAAATCAATTTGTTTAGAATTATCTAAATATTCATTATTTTAGATGTTTAGCC
Found at i:12128534 original size:18 final size:18
Alignment explanation
Indices: 12128500--12128548 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
12128490 TAATTTTTGC
*
12128500 ATTACATTTATTGCATC-T
1 ATTACATTCATT-CATCAT
12128518 ATTACATTACATTCATCAT
1 ATTACATT-CATTCATCAT
12128537 ATT-CATTCATTC
1 ATTACATTCATTC
12128549 TAAGCATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 5 0.18
18 16 0.57
19 7 0.25
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.47
Consensus pattern (18 bp):
ATTACATTCATTCATCAT
Found at i:12128640 original size:13 final size:13
Alignment explanation
Indices: 12128622--12128647 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12128612 AGAATCTTTT
12128622 CATTCATTGCATA
1 CATTCATTGCATA
12128635 CATTCATTGCATA
1 CATTCATTGCATA
12128648 TGCTTGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
CATTCATTGCATA
Found at i:12130352 original size:14 final size:15
Alignment explanation
Indices: 12130335--12130403 Score: 65
Period size: 14 Copynumber: 4.7 Consensus size: 15
12130325 TCTAACTTTG
12130335 ATTTTATTTTAT-TT
1 ATTTTATTTTATGTT
*
12130349 ATTTGATTTTATGTT
1 ATTTTATTTTATGTT
*
12130364 -TTATATTTTATGTT
1 ATTTTATTTTATGTT
12130378 ATATTT-TTTTATCTGTT
1 AT-TTTATTTTA--TGTT
12130395 -TTTTATTTT
1 ATTTTATTTT
12130404 TAATTGTGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
14 23 0.51
15 11 0.24
16 7 0.16
17 4 0.09
ACGTcount: A:0.19, C:0.01, G:0.06, T:0.74
Consensus pattern (15 bp):
ATTTTATTTTATGTT
Found at i:12130370 original size:19 final size:19
Alignment explanation
Indices: 12130317--12130371 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
12130307 AATTTTTCTT
*
12130317 TTTTATTTTCTA-ACTTTGA
1 TTTTATTTTATATA-TTTGA
*
12130336 TTTTATTTTATTTATTTGA
1 TTTTATTTTATATATTTGA
12130355 TTTTATGTTT-TATATTT
1 TTTTAT-TTTATATATTT
12130372 TATGTTATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 27 0.87
20 4 0.13
ACGTcount: A:0.20, C:0.04, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTATTTTATATATTTGA
Found at i:12130533 original size:34 final size:32
Alignment explanation
Indices: 12130470--12130556 Score: 88
Period size: 34 Copynumber: 2.6 Consensus size: 32
12130460 GGTAAGATAT
* *
12130470 TTATTATTTGCATTATTTTTTGGGTATAATTTA
1 TTATTATTTGCATGATTTTTTGGGCATAA-TTA
*
12130503 TTATGTATTTGCATGATTTGTTT-TGCATAATTA
1 TTAT-TATTTGCATGATTT-TTTGGGCATAATTA
12130536 TGATATTA-TTGCATGATTTTT
1 T--TATTATTTGCATGATTTTT
12130557 CAAATATATT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
32 2 0.04
33 19 0.40
34 20 0.43
35 6 0.13
ACGTcount: A:0.24, C:0.05, G:0.14, T:0.57
Consensus pattern (32 bp):
TTATTATTTGCATGATTTTTTGGGCATAATTA
Found at i:12134489 original size:21 final size:22
Alignment explanation
Indices: 12134454--12134496 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
12134444 AATATAATGA
* *
12134454 TTTTTTAATCTTAAAAAGGCTT
1 TTTTTTAATCGTAAAAAAGCTT
12134476 TTTTTTAAT-GTAAAAAAGCTT
1 TTTTTTAATCGTAAAAAAGCTT
12134497 ATTGAGTAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.49
Consensus pattern (22 bp):
TTTTTTAATCGTAAAAAAGCTT
Found at i:12134743 original size:25 final size:25
Alignment explanation
Indices: 12134697--12134744 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
12134687 TTTGATTTGA
* * * *
12134697 TTACATTCATCACTTTTTCTATCGC
1 TTACACTCATCACATATCCTATCGC
12134722 TTACACTCATCACATATCCTATC
1 TTACACTCATCACATATCCTATC
12134745 ATTTATCCTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.31, G:0.02, T:0.42
Consensus pattern (25 bp):
TTACACTCATCACATATCCTATCGC
Found at i:12145438 original size:13 final size:13
Alignment explanation
Indices: 12145420--12145450 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
12145410 ATTATAAAAG
12145420 ATTTATTATTATT
1 ATTTATTATTATT
12145433 ATTTATTATTATT
1 ATTTATTATTATT
*
12145446 TTTTA
1 ATTTA
12145451 AAAAAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
ATTTATTATTATT
Found at i:12146496 original size:3 final size:3
Alignment explanation
Indices: 12146483--12146527 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
12146473 AAAAATAAAA
*
12146483 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
12146528 GTATTGATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:12150784 original size:21 final size:21
Alignment explanation
Indices: 12150758--12150801 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
12150748 ATAAAATCAA
12150758 TGGCTTTCTTGAAACGGGTGG
1 TGGCTTTCTTGAAACGGGTGG
12150779 TGGCTTTCTTGAAACGGGTGG
1 TGGCTTTCTTGAAACGGGTGG
12150800 TG
1 TG
12150802 CTAATGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.14, G:0.39, T:0.34
Consensus pattern (21 bp):
TGGCTTTCTTGAAACGGGTGG
Found at i:12154784 original size:17 final size:17
Alignment explanation
Indices: 12154764--12154797 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
12154754 TATTGCTTGA
12154764 AGGATTCAGATGCTTTT
1 AGGATTCAGATGCTTTT
12154781 AGGATTCAGATGCTTTT
1 AGGATTCAGATGCTTTT
12154798 TTTTCTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (17 bp):
AGGATTCAGATGCTTTT
Found at i:12157510 original size:78 final size:78
Alignment explanation
Indices: 12157418--12157576 Score: 230
Period size: 78 Copynumber: 2.0 Consensus size: 78
12157408 TTGTTGGCAC
* * * *
12157418 CAAATCAACCTCATTAAACATGAAACAATAGTAG-AAAGGATCCAAAAAACTGTACCATCACTTT
1 CAAATCAACCTCATTAAACATGAAACAACAGTAGAAAAAGATCC-AAAAACTATACCATCACCTT
*
12157482 AATGAGCGAGTTAT
65 AATGAACGAGTTAT
* *
12157496 CAAATCAACCTCATTAAACATGAAACAACCGTAGAAAAAGATCCCAAAACTATACCATCACCTTA
1 CAAATCAACCTCATTAAACATGAAACAACAGTAGAAAAAGATCCAAAAACTATACCATCACCTTA
*
12157561 ATGAATGAGTTAT
66 ATGAACGAGTTAT
12157574 CAA
1 CAA
12157577 CATCCACTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 64 0.89
79 8 0.11
ACGTcount: A:0.46, C:0.21, G:0.11, T:0.22
Consensus pattern (78 bp):
CAAATCAACCTCATTAAACATGAAACAACAGTAGAAAAAGATCCAAAAACTATACCATCACCTTA
ATGAACGAGTTAT
Found at i:12159312 original size:6 final size:6
Alignment explanation
Indices: 12159301--12159332 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
12159291 CATTACACTT
12159301 TTTTTG TTTTTG TTTTT- TTTTT- TTTTTG TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT
12159333 CCCAAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (6 bp):
TTTTTG
Found at i:12159318 original size:16 final size:16
Alignment explanation
Indices: 12159299--12159332 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
12159289 TTCATTACAC
12159299 TTTTTTTGTTTTTGTT
1 TTTTTTTGTTTTTGTT
*
12159315 TTTTTTTTTTTTTGTT
1 TTTTTTTGTTTTTGTT
12159331 TT
1 TT
12159333 CCCAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (16 bp):
TTTTTTTGTTTTTGTT
Found at i:12159427 original size:21 final size:21
Alignment explanation
Indices: 12159403--12159456 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
12159393 AAAAAATTTG
*
12159403 AAAATAAAAACTTAAG-ATAAT
1 AAAATAAAAA-TTAAGAAAAAT
12159424 AAAATAAATAATTAAGAAAAAT
1 AAAATAAA-AATTAAGAAAAAT
12159446 AAAATCAAAAA
1 AAAAT-AAAAA
12159457 ATAAAATGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 13 0.45
22 13 0.45
23 3 0.10
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (21 bp):
AAAATAAAAATTAAGAAAAAT
Found at i:12159468 original size:19 final size:18
Alignment explanation
Indices: 12159441--12159476 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
12159431 ATAATTAAGA
12159441 AAAATAAAATCAAAAAAT
1 AAAATAAAATCAAAAAAT
*
12159459 AAAATGAAAATGAAAAAA
1 AAAAT-AAAATCAAAAAA
12159477 AGAAAACTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAATAAAATCAAAAAAT
Found at i:12160329 original size:5 final size:5
Alignment explanation
Indices: 12160319--12160348 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
12160309 GAAAAAAAAG
12160319 AATAA AATAA AATAA AATAA AATAA TAATA
1 AATAA AATAA AATAA AATAA AATAA -AATA
12160349 GTACTGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:12162500 original size:3 final size:3
Alignment explanation
Indices: 12162492--12162540 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
12162482 AGATAACGTC
12162492 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
12162540 T
1 T
12162541 TACTTTTCCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:12163034 original size:11 final size:11
Alignment explanation
Indices: 12163017--12163046 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
12163007 AAATCTCATA
12163017 AGAGATTTGTT
1 AGAGATTTGTT
*
12163028 TGAGATTTGTT
1 AGAGATTTGTT
12163039 AGAGATTT
1 AGAGATTT
12163047 ATCAGATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (11 bp):
AGAGATTTGTT
Found at i:12163139 original size:52 final size:52
Alignment explanation
Indices: 12163073--12163218 Score: 172
Period size: 52 Copynumber: 2.8 Consensus size: 52
12163063 TGGACAAGAA
* *
12163073 GACTTGTAAAAGAAGAATTCTAAGA-GAAAGAGGA-TCTTTAATAGGTAAGTTT
1 GACTTGTAAGAGAAGAATTCTAAGAGGAAA-AGGATTC-TTAATAGGTAAATTT
* *
12163125 GACTTGTAAGAGAAGAATTCTAAAAGGAAATGGATTCTTAATAGGTAAATTT
1 GACTTGTAAGAGAAGAATTCTAAGAGGAAAAGGATTCTTAATAGGTAAATTT
** * *
12163177 GACTTACAAGAGAAGAATTCTAAGATG-AGAGAGATTCTTAAT
1 GACTTGTAAGAGAAGAATTCTAAGAGGAAAAG-GATTCTTAAT
12163219 GGGCAAGTTT
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
51 2 0.02
52 73 0.90
53 6 0.07
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (52 bp):
GACTTGTAAGAGAAGAATTCTAAGAGGAAAAGGATTCTTAATAGGTAAATTT
Found at i:12163822 original size:25 final size:25
Alignment explanation
Indices: 12163764--12163822 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
12163754 GTATCAAAGC
* * *
12163764 TGAAGGTTCGAAACGTGAGAAGAGT
1 TGAAGGTTCAAAACATGAAAAGAGT
** *
12163789 CAAAAGTTCAAAACATGAAAAGAGT
1 TGAAGGTTCAAAACATGAAAAGAGT
12163814 TGAAGGTTC
1 TGAAGGTTC
12163823 GAGATGTGGG
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.42, C:0.10, G:0.27, T:0.20
Consensus pattern (25 bp):
TGAAGGTTCAAAACATGAAAAGAGT
Found at i:12164094 original size:11 final size:11
Alignment explanation
Indices: 12164077--12164119 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
12164067 AAATCCCATA
12164077 AGAGATTTGTT
1 AGAGATTTGTT
* *
12164088 TGAGATTTATT
1 AGAGATTTGTT
12164099 AGAGATTTGTT
1 AGAGATTTGTT
12164110 AGAGATTTGT
1 AGAGATTTGT
12164120 CAGATACTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.47
Consensus pattern (11 bp):
AGAGATTTGTT
Found at i:12164211 original size:52 final size:52
Alignment explanation
Indices: 12164144--12164300 Score: 217
Period size: 52 Copynumber: 3.0 Consensus size: 52
12164134 TGGACAAGAA
* * *
12164144 GACTTACAAAAGAAGAATTCTAAGA-GAAACATGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAGA-GATTCTTAATAGGCAAGTTT
* * *
12164196 GACTTGCAAGAGAAGAATTTTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
* * *
12164248 GACTTACAGGAGAAGAATTCTAAGAGGAGAGAGATTCTTAATGGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
12164300 G
1 G
12164301 TATGGTTATA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 87 0.95
53 5 0.05
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.27
Consensus pattern (52 bp):
GACTTACAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
Found at i:12165151 original size:11 final size:11
Alignment explanation
Indices: 12165134--12165176 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
12165124 AAATCCCATA
12165134 AGAGATTTGTT
1 AGAGATTTGTT
* *
12165145 TGAGATTTATT
1 AGAGATTTGTT
12165156 AGAGATTTGTT
1 AGAGATTTGTT
12165167 AGAGATTTGT
1 AGAGATTTGT
12165177 CAGATACTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.47
Consensus pattern (11 bp):
AGAGATTTGTT
Found at i:12165268 original size:52 final size:52
Alignment explanation
Indices: 12165201--12165357 Score: 217
Period size: 52 Copynumber: 3.0 Consensus size: 52
12165191 TGGACAAGAA
* * *
12165201 GACTTACAAAAGAAGAATTCTAAGA-GAAACATGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAGA-GATTCTTAATAGGCAAGTTT
* * *
12165253 GACTTGCAAGAGAAGAATTTTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
* * *
12165305 GACTTACAGGAGAAGAATTCTAAGAGGAGAGAGATTCTTAATGGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
12165357 G
1 G
12165358 TATGGTTATA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 87 0.95
53 5 0.05
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.27
Consensus pattern (52 bp):
GACTTACAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
Found at i:12169176 original size:27 final size:28
Alignment explanation
Indices: 12169130--12169185 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
12169120 TTTTGATTTG
*
12169130 AATTTAAATAATTATCTAAA-AATATTA
1 AATTTAAATAATTATCTAAATAAAATTA
12169157 AATTTAAATAATTTAT-TAAATAAAATTA
1 AATTTAAATAA-TTATCTAAATAAAATTA
12169185 A
1 A
12169186 TTGATAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (28 bp):
AATTTAAATAATTATCTAAATAAAATTA
Found at i:12169620 original size:2 final size:2
Alignment explanation
Indices: 12169613--12169637 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12169603 ATCTTCAACA
12169613 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
12169638 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12169646 original size:6 final size:6
Alignment explanation
Indices: 12169637--12169685 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
12169627 ATATATATAT
* * * *
12169637 AGAGAG AGAGAG AGAGAG AGAGAA AGAGAA AGAGAA AGAGAG AAAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
12169685 A
1 A
12169686 TCGGTGCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (6 bp):
AGAGAG
Found at i:12169648 original size:8 final size:8
Alignment explanation
Indices: 12169637--12169685 Score: 62
Period size: 8 Copynumber: 6.1 Consensus size: 8
12169627 ATATATATAT
12169637 AGAGAGAG
1 AGAGAGAG
12169645 AGAGAGAG
1 AGAGAGAG
*
12169653 AGAGAGAA
1 AGAGAGAG
*
12169661 AGAGAAAG
1 AGAGAGAG
*
12169669 AGAAAGAG
1 AGAGAGAG
*
12169677 AGAAAGAG
1 AGAGAGAG
12169685 A
1 A
12169686 TCGGTGCTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (8 bp):
AGAGAGAG
Found at i:12169654 original size:14 final size:14
Alignment explanation
Indices: 12169639--12169685 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
12169629 ATATATATAG
*
12169639 AGAGAGAGAGAGAG
1 AGAGAGAGAGAGAA
*
12169653 AGAGAGAAAGAGAA
1 AGAGAGAGAGAGAA
*
12169667 AGAGAAAGAGAGAA
1 AGAGAGAGAGAGAA
12169681 AGAGA
1 AGAGA
12169686 TCGGTGCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (14 bp):
AGAGAGAGAGAGAA
Found at i:12170291 original size:14 final size:15
Alignment explanation
Indices: 12170272--12170305 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
12170262 ATTATGACAT
12170272 ATTTTT-AAAATGAA
1 ATTTTTAAAAATGAA
12170286 ATTTTTAAAAAATGAA
1 ATTTTT-AAAAATGAA
12170302 ATTT
1 ATTT
12170306 GAATTTAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
16 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (15 bp):
ATTTTTAAAAATGAA
Found at i:12170465 original size:22 final size:24
Alignment explanation
Indices: 12170414--12170473 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
12170404 GCATCTATGT
12170414 AGATAATTTTTTTAAATGACACATA
1 AGATAATTTTTTTAAA-GACACATA
* *
12170439 TGATAATTTTTTTAAA-AGA-ATA
1 AGATAATTTTTTTAAAGACACATA
*
12170461 AGATAGTTTTTTT
1 AGATAATTTTTTT
12170474 TAATTACAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 14 0.45
23 2 0.06
25 15 0.48
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (24 bp):
AGATAATTTTTTTAAAGACACATA
Found at i:12173295 original size:15 final size:15
Alignment explanation
Indices: 12173251--12173297 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
12173241 ACAATAAAAA
*
12173251 TATAAAAATATAATT
1 TATAAAAATATATTT
**
12173266 T-TAAATTTAATATTT
1 TATAAAAAT-ATATTT
12173281 TATAAAAATATATTT
1 TATAAAAATATATTT
12173296 TA
1 TA
12173298 AATACAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
14 5 0.20
15 15 0.60
16 5 0.20
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TATAAAAATATATTT
Found at i:12176787 original size:19 final size:18
Alignment explanation
Indices: 12176765--12176813 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
12176755 ATTTCTTGAA
12176765 TTTTTTTATTTGATTTTT
1 TTTTTTTATTTGATTTTT
* *
12176783 GTTTTTTGTTTGGATTTTT
1 TTTTTTTATTT-GATTTTT
12176802 TATTTTTTATTT
1 T-TTTTTTATTT
12176814 TTTAAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 9 0.36
19 7 0.28
20 9 0.36
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.80
Consensus pattern (18 bp):
TTTTTTTATTTGATTTTT
Found at i:12177963 original size:50 final size:47
Alignment explanation
Indices: 12177894--12177995 Score: 141
Period size: 50 Copynumber: 2.1 Consensus size: 47
12177884 TAACACCTAT
*
12177894 AAATGCTATTCAAAAAGAGGCATTGAAACTTTAAAAATCTTGTCTGA
1 AAATGCTATTCAAAAAGAGGCATTGAAACTTTAAAAATCTTATCTGA
* * *
12177941 AAATAGCTATTCATAAATAGAGGCTTTGAAATTTTAAAAATTTTATCTGA
1 AAAT-GCTATTCA-AAA-AGAGGCATTGAAACTTTAAAAATCTTATCTGA
12177991 AAATG
1 AAATG
12177996 GCTCCCCATA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
47 4 0.08
48 8 0.17
49 4 0.08
50 32 0.67
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (47 bp):
AAATGCTATTCAAAAAGAGGCATTGAAACTTTAAAAATCTTATCTGA
Found at i:12178006 original size:50 final size:50
Alignment explanation
Indices: 12177909--12178015 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
12177899 CTATTCAAAA
* * **
12177909 AGAGGCATTGAAACTTTAAAAATCTTGTCTGAAAATAGCTATTCATAAAT
1 AGAGGCTTTGAAACTTTAAAAATCTTATCTGAAAATAGCTACCCATAAAT
* * * *
12177959 AGAGGCTTTGAAATTTTAAAAATTTTATCTGAAAATGGCTCCCCATAAAT
1 AGAGGCTTTGAAACTTTAAAAATCTTATCTGAAAATAGCTACCCATAAAT
*
12178009 AAAGGCT
1 AGAGGCT
12178016 AAACAATGTT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (50 bp):
AGAGGCTTTGAAACTTTAAAAATCTTATCTGAAAATAGCTACCCATAAAT
Found at i:12179069 original size:20 final size:21
Alignment explanation
Indices: 12179046--12179089 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
12179036 AAAATTTTTA
12179046 TTTTTTTTCAAAAAATTGG-T
1 TTTTTTTTCAAAAAATTGGCT
* *
12179066 TTTTTTTTTAAAAGATTGGCT
1 TTTTTTTTCAAAAAATTGGCT
12179087 TTT
1 TTT
12179090 AAGTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (21 bp):
TTTTTTTTCAAAAAATTGGCT
Found at i:12179078 original size:19 final size:21
Alignment explanation
Indices: 12179046--12179089 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
12179036 AAAATTTTTA
12179046 TTTTTTTTCAAAAA-ATTGG-
1 TTTTTTTTCAAAAAGATTGGC
**
12179065 TTTTTTTTTTAAAAGATTGGC
1 TTTTTTTTCAAAAAGATTGGC
12179086 TTTT
1 TTTT
12179090 AAGTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 5 0.24
21 4 0.19
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (21 bp):
TTTTTTTTCAAAAAGATTGGC
Found at i:12180459 original size:1 final size:1
Alignment explanation
Indices: 12180453--12180506 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
12180443 ATTATTTCTC
* * ** **
12180453 TTTTTTTTTTCTTTTTTTTTCTTTTTTTTCATTTTTTGCTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
12180507 GCATTTGTGA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.02, C:0.07, G:0.02, T:0.89
Consensus pattern (1 bp):
T
Found at i:12180469 original size:9 final size:9
Alignment explanation
Indices: 12180455--12180506 Score: 70
Period size: 9 Copynumber: 5.8 Consensus size: 9
12180445 TATTTCTCTT
12180455 TTTTTTTTC
1 TTTTTTTTC
12180464 TTTTTTTTTC
1 -TTTTTTTTC
12180474 TTTTTTTTC
1 TTTTTTTTC
* *
12180483 ATTTTTTGC
1 TTTTTTTTC
12180492 TTTTTTTT-
1 TTTTTTTTC
12180500 TTTTTTT
1 TTTTTTT
12180507 GCATTTGTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
8 7 0.18
9 22 0.58
10 9 0.24
ACGTcount: A:0.02, C:0.08, G:0.02, T:0.88
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:12180858 original size:18 final size:19
Alignment explanation
Indices: 12180835--12180877 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
12180825 TAAGAAAATG
*
12180835 TTTTTC-TTTTTCAAGATT
1 TTTTTCTTTTTTAAAGATT
12180853 TTTTTCTTTTTTTAAAGATT
1 TTTTTC-TTTTTTAAAGATT
12180873 TTTTT
1 TTTTT
12180878 AGTTTTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
20 16 0.73
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTTTCTTTTTTAAAGATT
Found at i:12180883 original size:20 final size:20
Alignment explanation
Indices: 12180841--12180883 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
12180831 AATGTTTTTC
* **
12180841 TTTTTCAAGATTTTTTTCTT
1 TTTTTAAAGATTTTTTTAGT
12180861 TTTTTAAAGATTTTTTTAGT
1 TTTTTAAAGATTTTTTTAGT
12180881 TTT
1 TTT
12180884 GTTGACTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.70
Consensus pattern (20 bp):
TTTTTAAAGATTTTTTTAGT
Found at i:12184061 original size:19 final size:19
Alignment explanation
Indices: 12184037--12184085 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
12184027 ATATTTGTAC
12184037 AAATATGATGCAAATAGCA
1 AAATATGATGCAAATAGCA
12184056 AAATATGATGCAAATAGCA
1 AAATATGATGCAAATAGCA
12184075 AAATATGATGC
1 AAATATGATGC
12184086 CCATAATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.51, C:0.10, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATATGATGCAAATAGCA
Found at i:12184421 original size:22 final size:21
Alignment explanation
Indices: 12184369--12184431 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
12184359 CTAAAAATGA
* *
12184369 TTATTTTATATTTATTTTTTTG
1 TTATTTTATA-TTATTTTTATC
*
12184391 TCATTTTATATTATTTTTATC
1 TTATTTTATATTATTTTTATC
*
12184412 TTATTATTATTTTATATTTT
1 TTATT-TTATATTAT-TTTT
12184432 TAAGGAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 13 0.38
22 17 0.50
23 4 0.12
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (21 bp):
TTATTTTATATTATTTTTATC
Found at i:12191814 original size:40 final size:40
Alignment explanation
Indices: 12191728--12191818 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
12191718 CCTCTCAGAC
* *
12191728 TTTTAAAATTTAAAGTTCAGTGTCTCTAGTCAAAAGAGCT
1 TTTTAATATTTAAAGTTCAGTATCTCTAGTCAAAAGAGCT
* *
12191768 TTTTAATATTTAAAGTT-TGTTATCTCTAGTCAAATGAGCT
1 TTTTAATATTTAAAGTTCAG-TATCTCTAGTCAAAAGAGCT
12191808 TTTTAAT-TTTA
1 TTTTAATATTTA
12191819 TGAGCCTTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
39 5 0.11
40 41 0.89
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (40 bp):
TTTTAATATTTAAAGTTCAGTATCTCTAGTCAAAAGAGCT
Found at i:12192034 original size:78 final size:78
Alignment explanation
Indices: 12191900--12192140 Score: 343
Period size: 78 Copynumber: 3.2 Consensus size: 78
12191890 CAGATTTTTA
* * * ** *
12191900 ATTTAAAGTTTGTTGCTTTTGATTAAAGGAGC-----CATTTAAAGTTCATTGCTTCTGGTGAGA
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTTGTTGCCTCTGGTGAGA
12191960 AGAGCCTTTTAAC
66 AGAGCCTTTTAAC
*
12191973 ATTTAAAGTTTGTTGCCTTTGGTTAAAGTAGCTTTTGAATTTAAAGTTTGTTGCCTCTGGTGA-A
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTTGTTGCCTCTGGTGAGA
12192037 AGGAGCCTTTTAAC
66 A-GAGCCTTTTAAC
12192051 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTTGTTGCCTCTGGTGAG-
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTTGTTGCCTCTGGTGAGA
*
12192115 AGAAGTCTTTTAAC
66 AG-AGCCTTTTAAC
12192129 ATTTAAAGTTTG
1 ATTTAAAGTTTG
12192141 AAGCCTTTTA
Statistics
Matches: 151, Mismatches: 9, Indels: 11
0.88 0.05 0.06
Matches are distributed among these distances:
73 29 0.19
77 3 0.02
78 119 0.79
ACGTcount: A:0.26, C:0.11, G:0.22, T:0.42
Consensus pattern (78 bp):
ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTTGTTGCCTCTGGTGAGA
AGAGCCTTTTAAC
Done.